RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14035
         (90 letters)



>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein,
           helical hairpin, unwound RE transport protein; HET: PLM;
           2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A*
           2nwx_A* 3v8g_A 3v8f_A 3kbc_A
          Length = 422

 Score = 45.3 bits (108), Expect = 3e-07
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 8/53 (15%)

Query: 15  NVLGLVFFSIAMGIAIA--------RIGKAGKPLLSVFESLSEVVMTITTWVI 59
            VL  +FF+I +GIAI         ++ K+ + LL     L+E +  I   V+
Sbjct: 150 QVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVM 202


>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
           5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
           PDB: 3ss9_X* 3r0x_A* 3r0z_A
          Length = 442

 Score = 26.7 bits (59), Expect = 1.0
 Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 17  LGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVICAGI 63
           +G+   + A G+A+ R        +   E L +   T++   +   +
Sbjct: 329 IGIDNLTAADGLAVGRASGFVGRAM---ERLLDGFYTLSDQTMYDML 372


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.8 bits (56), Expect = 2.5
 Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 16  VLGLVFFSIAMGIAIARI-GKAGKPLLSVFESLSEVVMTITTWVICAGIFRISSSGKHEL 74
           ++G++   +A  +  A++ G     L S  +  +     + T V  A     + S +   
Sbjct: 240 LIGVI--QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE----TDSWESFF 293

Query: 75  SLAVRPIELL 84
               + I +L
Sbjct: 294 VSVRKAITVL 303


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.140    0.417 

Gapped
Lambda     K      H
   0.267   0.0650    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,413,695
Number of extensions: 72001
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 11
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.6 bits)