RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14035
         (90 letters)



>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 186

 Score = 28.0 bits (62), Expect = 0.11
 Identities = 10/41 (24%), Positives = 15/41 (36%)

Query: 32 RIGKAGKPLLSVFESLSEVVMTITTWVICAGIFRISSSGKH 72
          R+ K+GKP L   +S   V   + T          S+    
Sbjct: 25 RLLKSGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSD 65


>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p)
          {Escherichia coli [TaxId: 562]}
          Length = 113

 Score = 23.4 bits (50), Expect = 4.0
 Identities = 5/41 (12%), Positives = 13/41 (31%)

Query: 31 ARIGKAGKPLLSVFESLSEVVMTITTWVICAGIFRISSSGK 71
           ++ + G   L V  +   +   +        +   S+  K
Sbjct: 14 RKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEK 54


>d1hn0a1 a.102.3.2 (A:235-618) Chondroitin ABC lyase I {Proteus
           vulgaris [TaxId: 585]}
          Length = 384

 Score = 23.0 bits (49), Expect = 8.3
 Identities = 3/19 (15%), Positives = 9/19 (47%)

Query: 54  ITTWVICAGIFRISSSGKH 72
           ++ W+       +  +G+H
Sbjct: 309 VSAWIYSNPEVGLPLAGRH 327


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.140    0.417 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 337,923
Number of extensions: 12521
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 7
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.2 bits)