BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14038
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 109 bits (272), Expect = 5e-25, Method: Composition-based stats.
Identities = 51/111 (45%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 22 RLSPWATYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQ 80
R+ W Y T + G Y+ W+P +++ + +P KPD +IYE+HVG+ +E
Sbjct: 136 RIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGEEP 195
Query: 81 KCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131
+ ++Y +F V+PRI YN VQLMAIMEH+YYASFGY VT+FFA SSR
Sbjct: 196 EVSTYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVSSR 246
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 108 bits (270), Expect = 9e-25, Method: Composition-based stats.
Identities = 51/111 (45%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 22 RLSPWATYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQ 80
R+ W Y T + G Y+ W+P +++ + +P KPD +IYE+HVG+ +E
Sbjct: 136 RIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGEEP 195
Query: 81 KCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131
+ ++Y +F V+PRI YN VQLMAIMEH+YYASFGY VT+FFA SSR
Sbjct: 196 EVSTYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVSSR 246
>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym:
1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase
From Mycob Tuberculosis H37rv
Length = 722
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 55 WTSSKP-KKPDN--LKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGYNAVQLMAIME 111
W + + + P N + YE H+G + SY R + IV QG+ V+L+ + E
Sbjct: 232 WMAGRALRNPVNEAMSTYEVHLG---SWRPGLSYRQLARELTDYIVDQGFTHVELLPVAE 288
Query: 112 HAYYASFGYQVTSFFAASSR 131
H + S+GYQVTS++A +SR
Sbjct: 289 HPFAGSWGYQVTSYYAPTSR 308
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 66 LKIYESHVGIC---TQEQKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQV 122
+ IYE H+G T SY + ++P G+ ++L+ I EH + S+GYQ
Sbjct: 132 ISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQP 191
Query: 123 TSFFAASSR 131
T +A + R
Sbjct: 192 TGLYAPTRR 200
>pdb|1K7S|N Chain N, Fhud Complexed With Albomycin-Delta 2
Length = 265
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 79 EQKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFG 119
E A YEDF+R + PR VK+G + L +++ + FG
Sbjct: 121 ETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFG 161
>pdb|1ESZ|A Chain A, Structure Of The Periplasmic Ferric Siderophore Binding
Protein Fhud Complexed With Coprogen
pdb|1K2V|N Chain N, E. Coli Periplasmic Protein Fhud Complexed With Desferal
Length = 266
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 79 EQKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFG 119
E A YEDF+R + PR VK+G + L +++ + FG
Sbjct: 122 ETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFG 162
>pdb|1EFD|N Chain N, Periplasmic Ferric Siderophore Binding Protein Fhud
Complexed With Gallichrome
Length = 266
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 79 EQKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFG 119
E A YEDF+R + PR VK+G + L +++ + FG
Sbjct: 122 ETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFG 162
>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltoheptaose
pdb|3VGH|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltotriosyltrehalose
Length = 558
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 50 QDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGYNAVQLMAI 109
Q+ ++ + K ++L IYE HVG T E ++E +R + + G A+++M I
Sbjct: 86 QESKEFNNETFLKKEDLIIYEIHVGTFTPE---GTFEGVIR-KLDYLKDLGITAIEIMPI 141
Query: 110 MEHAYYASFGYQVTSFFAASS 130
+ +GY +A +
Sbjct: 142 AQFPGKRDWGYDGVYLYAVQN 162
>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s)
pdb|3VGF|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s) Complexed With Maltotriosyltrehalose
Length = 558
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 50 QDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGYNAVQLMAI 109
Q+ ++ + K ++L IYE HVG T E ++E +R + + G A+++M I
Sbjct: 86 QESKEFNNETFLKKEDLIIYEIHVGTFTPE---GTFEGVIR-KLDYLKDLGITAIEIMPI 141
Query: 110 MEHAYYASFGYQVTSFFAASS 130
+ +GY +A +
Sbjct: 142 AQFPGKRDWGYDGVYLYAVQN 162
>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
Glycosyltrehalose Trehalohydrolase
pdb|3VGB|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(Gthase) From Sulfolobus Solfataricus Km1
Length = 558
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 50 QDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGYNAVQLMAI 109
Q+ ++ + K ++L IYE HVG T E ++E +R + + G A+++M I
Sbjct: 86 QESKEFNNETFLKKEDLIIYEIHVGTFTPE---GTFEGVIR-KLDYLKDLGITAIEIMPI 141
Query: 110 MEHAYYASFGYQVTSFFAASS 130
+ +GY +A +
Sbjct: 142 AQFPGKRDWGYDGVYLYAVQN 162
>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252e)
Length = 558
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 50 QDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGYNAVQLMAI 109
Q+ ++ + K ++L IYE HVG T E ++E +R + + G A+++M I
Sbjct: 86 QESKEFNNETFLKKEDLIIYEIHVGTFTPE---GTFEGVIR-KLDYLKDLGITAIEIMPI 141
Query: 110 MEHAYYASFGYQVTSFFAASS 130
+ +GY +A +
Sbjct: 142 AQFPGKRDWGYDGVYLYAVQN 162
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
From Sulfolobus Solfataricus
Length = 558
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 50 QDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGYNAVQLMAI 109
Q+ ++ + K ++L IYE HVG T E ++E +R + + G A+++M I
Sbjct: 86 QESKEFNNETFLKKEDLIIYEIHVGTFTPE---GTFEGVIR-KLDYLKDLGITAIEIMPI 141
Query: 110 MEHAYYASFGYQVTSFFAASS 130
+ +GY +A +
Sbjct: 142 AQFPGKRDWGYDGVYLYAVQN 162
>pdb|3OQQ|A Chain A, Crystal Structure Of A Putative Lipoprotein (Bacova_00967)
From Bacteroides Ovatus At 2.08 A Resolution
Length = 435
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 16 LFYSILRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHV 73
++YS + S W V P HAYE+ + D KW S K N K YE+ V
Sbjct: 374 VYYSNTKGSTWG--VKLPVGTRHAYERVPFREAYPDFTKWVDS--KGVSNQKWYENFV 427
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,978,357
Number of Sequences: 62578
Number of extensions: 153108
Number of successful extensions: 442
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 434
Number of HSP's gapped (non-prelim): 20
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 46 (22.3 bits)