Query psy14038
Match_columns 131
No_of_seqs 144 out of 1246
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 18:01:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0296 GlgB 1,4-alpha-glucan 100.0 3.2E-33 6.9E-38 241.5 9.8 119 7-131 87-209 (628)
2 PLN02447 1,4-alpha-glucan-bran 100.0 5E-31 1.1E-35 232.0 12.3 125 7-131 170-295 (758)
3 PRK14706 glycogen branching en 100.0 3.2E-31 7E-36 230.7 10.6 121 6-131 87-212 (639)
4 PRK12568 glycogen branching en 100.0 1E-30 2.3E-35 229.4 10.7 121 6-131 187-314 (730)
5 PRK14705 glycogen branching en 100.0 2.9E-30 6.2E-35 235.7 9.8 118 6-131 688-810 (1224)
6 KOG0470|consensus 100.0 6.7E-30 1.4E-34 221.5 7.2 123 8-131 172-300 (757)
7 TIGR01515 branching_enzym alph 100.0 2.4E-29 5.2E-34 218.1 10.6 118 6-131 78-201 (613)
8 PLN02960 alpha-amylase 100.0 5.7E-29 1.2E-33 220.5 13.1 124 6-131 338-461 (897)
9 PRK05402 glycogen branching en 100.0 6.3E-29 1.4E-33 218.9 11.1 121 6-131 181-310 (726)
10 PRK12313 glycogen branching en 100.0 2.4E-28 5.3E-33 212.3 11.3 120 7-131 88-215 (633)
11 TIGR02103 pullul_strch alpha-1 99.9 3.2E-28 7E-33 217.5 9.0 103 6-113 186-312 (898)
12 PLN02877 alpha-amylase/limit d 99.9 1E-27 2.2E-32 214.9 9.2 121 6-131 273-454 (970)
13 TIGR02104 pulA_typeI pullulana 99.9 9.5E-28 2.1E-32 207.8 8.6 120 6-131 71-216 (605)
14 COG1523 PulA Type II secretory 99.9 2.9E-27 6.2E-32 206.8 8.6 108 20-131 104-253 (697)
15 TIGR02102 pullulan_Gpos pullul 99.9 3.5E-26 7.5E-31 207.8 11.4 121 6-131 385-542 (1111)
16 PRK03705 glycogen debranching 99.9 3.6E-26 7.8E-31 199.7 10.0 122 6-131 68-232 (658)
17 TIGR02402 trehalose_TreZ malto 99.9 1E-25 2.2E-30 193.2 10.5 109 7-131 44-155 (542)
18 TIGR02100 glgX_debranch glycog 99.9 4.2E-25 9E-30 193.9 10.1 122 6-131 65-237 (688)
19 PRK14510 putative bifunctional 99.8 3E-21 6.6E-26 177.7 8.5 120 7-131 75-240 (1221)
20 PLN03244 alpha-amylase; Provis 99.6 8.5E-15 1.8E-19 129.6 8.6 83 7-91 344-426 (872)
21 TIGR02456 treS_nterm trehalose 99.4 6.7E-13 1.5E-17 114.0 6.1 66 64-131 4-71 (539)
22 PF00128 Alpha-amylase: Alpha 99.3 2.3E-12 4.9E-17 100.0 4.8 47 83-131 1-47 (316)
23 PRK10933 trehalose-6-phosphate 99.2 1.6E-11 3.5E-16 106.0 5.9 67 63-131 8-76 (551)
24 TIGR02403 trehalose_treC alpha 99.2 2E-11 4.3E-16 105.2 6.1 66 64-131 3-70 (543)
25 smart00642 Aamy Alpha-amylase 99.2 2.8E-11 6E-16 90.0 5.3 51 80-131 13-65 (166)
26 PRK10785 maltodextrin glucosid 99.1 8.6E-10 1.9E-14 96.1 9.9 46 83-131 176-221 (598)
27 PRK09505 malS alpha-amylase; R 98.6 6.5E-08 1.4E-12 85.7 6.8 69 62-131 186-287 (683)
28 PRK09441 cytoplasmic alpha-amy 98.6 5.1E-08 1.1E-12 82.8 4.1 43 83-126 19-62 (479)
29 TIGR02401 trehalose_TreY malto 98.5 1.2E-07 2.5E-12 85.4 4.9 48 83-131 13-60 (825)
30 PRK14511 maltooligosyl trehalo 98.4 3.8E-07 8.2E-12 82.6 4.9 48 83-131 17-64 (879)
31 PLN02784 alpha-amylase 98.3 6.5E-07 1.4E-11 80.8 4.9 65 64-131 497-563 (894)
32 PRK14507 putative bifunctional 98.3 1E-06 2.2E-11 84.1 6.1 60 65-131 743-802 (1693)
33 PLN02361 alpha-amylase 98.3 7.4E-07 1.6E-11 74.7 4.4 45 84-131 27-71 (401)
34 PLN00196 alpha-amylase; Provis 98.1 3.1E-06 6.7E-11 71.5 4.8 45 82-129 40-84 (428)
35 COG0366 AmyA Glycosidases [Car 98.0 8.8E-06 1.9E-10 67.9 5.2 62 67-130 2-71 (505)
36 KOG0471|consensus 97.8 1.5E-05 3.2E-10 69.2 3.4 67 63-131 15-83 (545)
37 cd02854 Glycogen_branching_enz 97.8 4.1E-05 8.8E-10 52.5 4.4 39 6-45 61-99 (99)
38 cd02860 Pullulanase_N_term Pul 97.4 0.00031 6.6E-09 47.6 4.5 36 6-41 60-95 (100)
39 PRK13840 sucrose phosphorylase 97.2 0.00039 8.4E-09 60.0 4.0 47 83-131 17-64 (495)
40 TIGR03852 sucrose_gtfA sucrose 96.4 0.0034 7.3E-08 53.9 3.6 46 80-131 14-59 (470)
41 TIGR01531 glyc_debranch glycog 96.1 0.0061 1.3E-07 58.1 4.1 46 82-129 128-173 (1464)
42 PF14872 GHL5: Hypothetical gl 96.1 0.0099 2.1E-07 52.9 4.9 45 63-110 176-234 (811)
43 cd02855 Glycogen_branching_enz 95.5 0.021 4.6E-07 38.2 3.6 33 7-39 72-105 (106)
44 TIGR02455 TreS_stutzeri trehal 94.8 0.047 1E-06 48.8 4.9 63 67-131 53-125 (688)
45 cd02853 MTHase_N_term Maltooli 94.1 0.026 5.6E-07 37.0 1.3 32 6-41 52-84 (85)
46 cd02852 Isoamylase_N_term Isoa 93.8 0.032 6.8E-07 38.7 1.4 30 6-35 62-99 (119)
47 cd02856 Glycogen_debranching_e 92.8 0.074 1.6E-06 36.0 1.9 30 6-35 58-95 (103)
48 COG3280 TreY Maltooligosyl tre 90.3 0.27 5.9E-06 44.7 3.2 42 84-126 17-58 (889)
49 PLN02635 disproportionating en 86.9 1.5 3.1E-05 38.6 5.4 42 71-112 34-75 (538)
50 PF14701 hDGE_amylase: glucano 85.0 1.3 2.8E-05 37.8 4.0 33 83-116 19-51 (423)
51 PF02446 Glyco_hydro_77: 4-alp 80.6 2.1 4.4E-05 37.0 3.7 47 81-127 13-59 (496)
52 PRK05402 glycogen branching en 79.4 1.5 3.2E-05 39.6 2.5 23 7-30 76-98 (726)
53 PRK14508 4-alpha-glucanotransf 78.2 5.3 0.00011 34.7 5.4 33 81-113 21-53 (497)
54 PLN03236 4-alpha-glucanotransf 76.9 5.6 0.00012 36.3 5.4 32 81-113 78-109 (745)
55 PLN02950 4-alpha-glucanotransf 74.4 7.1 0.00015 36.5 5.5 32 81-113 278-309 (909)
56 PRK14510 putative bifunctional 71.1 8.7 0.00019 37.0 5.3 48 80-131 740-787 (1221)
57 COG4822 CbiK Cobalamin biosynt 70.9 3.9 8.5E-05 32.4 2.5 23 89-111 181-203 (265)
58 cd02858 Esterase_N_term Estera 65.5 11 0.00025 24.4 3.6 24 7-33 53-76 (85)
59 PF06180 CbiK: Cobalt chelatas 61.9 6.3 0.00014 31.5 2.2 22 90-111 186-207 (262)
60 PF02679 ComA: (2R)-phospho-3- 61.3 7.4 0.00016 30.9 2.5 25 83-107 74-104 (244)
61 cd03413 CbiK_C Anaerobic cobal 59.2 9.8 0.00021 25.9 2.5 23 90-112 45-67 (103)
62 TIGR00217 malQ 4-alpha-glucano 58.0 20 0.00044 31.3 4.8 34 80-113 29-62 (513)
63 PF12996 DUF3880: DUF based on 56.0 10 0.00022 24.4 2.0 21 92-112 29-49 (79)
64 cd03409 Chelatase_Class_II Cla 53.1 15 0.00033 23.8 2.6 23 90-112 48-70 (101)
65 TIGR03581 EF_0839 conserved hy 52.8 13 0.00028 29.3 2.5 22 89-110 137-158 (236)
66 TIGR03565 alk_sulf_monoox alka 51.5 17 0.00037 29.6 3.2 27 81-108 302-328 (346)
67 PF07071 DUF1341: Protein of u 51.4 14 0.0003 28.8 2.4 22 89-110 137-158 (218)
68 COG2333 ComEC Predicted hydrol 49.8 7.8 0.00017 31.5 0.9 23 89-111 76-98 (293)
69 TIGR03849 arch_ComA phosphosul 49.3 18 0.00039 28.6 2.8 25 83-107 61-91 (237)
70 PF11752 DUF3309: Protein of u 48.8 11 0.00024 22.7 1.2 14 111-124 18-31 (49)
71 PRK11052 malQ 4-alpha-glucanot 48.6 29 0.00063 31.5 4.4 31 80-111 159-189 (695)
72 PRK05692 hydroxymethylglutaryl 48.2 50 0.0011 26.4 5.3 42 64-106 3-45 (287)
73 PF13527 Acetyltransf_9: Acety 48.2 5.1 0.00011 26.8 -0.3 29 80-108 85-113 (127)
74 PRK13745 anaerobic sulfatase-m 47.9 16 0.00035 30.5 2.5 21 92-112 186-206 (412)
75 TIGR03612 RutA pyrimidine util 47.6 19 0.00042 29.5 2.9 28 81-108 304-331 (355)
76 PF03198 Glyco_hydro_72: Gluca 45.3 15 0.00032 30.3 1.9 23 88-110 54-76 (314)
77 smart00733 Mterf Mitochondrial 44.8 21 0.00045 17.4 1.8 11 92-102 21-31 (31)
78 PRK00719 alkanesulfonate monoo 43.9 28 0.00061 28.8 3.4 27 81-108 303-329 (378)
79 PF14883 GHL13: Hypothetical g 42.4 30 0.00065 28.3 3.2 31 85-115 15-45 (294)
80 TIGR03841 F420_Rv3093c probabl 39.4 36 0.00079 27.0 3.3 27 82-109 274-300 (301)
81 TIGR03858 LLM_2I7G probable ox 39.2 35 0.00075 27.6 3.2 29 81-109 284-312 (337)
82 PRK02271 methylenetetrahydrome 38.7 40 0.00086 27.1 3.4 28 82-110 282-310 (325)
83 PRK01060 endonuclease IV; Prov 38.2 31 0.00066 26.7 2.6 20 90-109 15-34 (281)
84 TIGR03558 oxido_grp_1 lucifera 37.8 39 0.00085 27.0 3.3 28 82-109 279-306 (323)
85 TIGR03854 F420_MSMEG_3544 prob 35.2 47 0.001 26.4 3.3 28 81-109 242-269 (290)
86 PLN02746 hydroxymethylglutaryl 34.4 1E+02 0.0022 25.6 5.3 46 62-108 43-89 (347)
87 cd04301 NAT_SF N-Acyltransfera 34.1 66 0.0014 17.2 3.0 24 83-106 41-64 (65)
88 PRK11858 aksA trans-homoaconit 34.0 1E+02 0.0022 25.6 5.2 47 63-110 2-50 (378)
89 cd03416 CbiX_SirB_N Sirohydroc 32.6 51 0.0011 21.5 2.7 23 92-114 49-71 (101)
90 TIGR03620 F420_MSMEG_4141 prob 32.3 56 0.0012 26.0 3.3 29 82-111 233-261 (278)
91 cd03412 CbiK_N Anaerobic cobal 32.1 48 0.001 23.2 2.6 23 92-114 61-83 (127)
92 TIGR02867 spore_II_P stage II 31.5 1E+02 0.0022 23.5 4.5 44 67-110 2-57 (196)
93 PRK14581 hmsF outer membrane N 31.3 51 0.0011 29.9 3.2 27 89-115 336-362 (672)
94 TIGR02660 nifV_homocitr homoci 31.0 1.1E+02 0.0025 25.1 5.0 45 65-110 1-47 (365)
95 PTZ00397 macrophage migration 30.5 83 0.0018 21.3 3.5 60 62-125 54-115 (116)
96 PF10524 NfI_DNAbd_pre-N: Nucl 30.0 25 0.00055 20.5 0.7 18 85-102 10-27 (44)
97 COG0641 AslB Arylsulfatase reg 29.8 53 0.0012 27.5 2.9 25 92-116 175-199 (378)
98 TIGR03557 F420_G6P_family F420 29.4 69 0.0015 25.8 3.4 27 82-109 268-295 (316)
99 PRK14582 pgaB outer membrane N 29.2 70 0.0015 29.1 3.7 24 89-112 336-359 (671)
100 TIGR03842 F420_CPS_4043 F420-d 29.1 68 0.0015 25.8 3.3 28 82-110 285-312 (330)
101 COG1640 MalQ 4-alpha-glucanotr 29.1 1E+02 0.0022 27.3 4.5 47 64-113 16-62 (520)
102 PF04309 G3P_antiterm: Glycero 28.9 48 0.001 25.0 2.2 20 90-109 107-126 (175)
103 TIGR02804 ExbD_2 TonB system t 28.6 86 0.0019 21.5 3.4 26 81-107 93-118 (121)
104 PRK09856 fructoselysine 3-epim 28.3 54 0.0012 25.2 2.5 19 90-108 16-34 (275)
105 PRK00923 sirohydrochlorin coba 28.3 58 0.0013 22.3 2.5 23 91-113 50-72 (126)
106 PF08260 Kinin: Insect kinin p 28.0 31 0.00068 13.1 0.6 6 114-119 3-8 (8)
107 PRK14507 putative bifunctional 27.5 94 0.002 31.4 4.4 30 81-111 189-218 (1693)
108 PRK03739 2-isopropylmalate syn 27.1 2.2E+02 0.0047 25.2 6.3 56 52-110 19-76 (552)
109 TIGR00542 hxl6Piso_put hexulos 26.9 56 0.0012 25.3 2.4 16 92-107 21-36 (279)
110 smart00729 Elp3 Elongator prot 26.6 98 0.0021 21.8 3.5 27 85-112 166-192 (216)
111 TIGR03632 bact_S11 30S ribosom 26.4 73 0.0016 21.9 2.6 22 86-107 46-67 (108)
112 TIGR02801 tolR TolR protein. T 26.3 1E+02 0.0022 21.2 3.4 26 81-107 102-127 (129)
113 TIGR02803 ExbD_1 TonB system t 26.2 1.1E+02 0.0023 21.0 3.5 26 81-107 94-119 (122)
114 cd02861 E_set_proteins_like E 26.2 1E+02 0.0022 19.5 3.1 24 7-34 50-73 (82)
115 TIGR03554 F420_G6P_DH glucose- 26.0 83 0.0018 25.4 3.3 27 82-109 285-311 (331)
116 COG5256 TEF1 Translation elong 25.9 68 0.0015 27.6 2.8 32 84-115 164-197 (428)
117 TIGR03860 FMN_nitrolo FMN-depe 25.5 82 0.0018 26.5 3.3 29 82-110 360-388 (422)
118 PF00150 Cellulase: Cellulase 25.5 57 0.0012 24.7 2.2 22 88-109 22-43 (281)
119 TIGR03555 F420_mer 5,10-methyl 25.4 87 0.0019 25.1 3.3 25 82-107 281-305 (325)
120 PRK13384 delta-aminolevulinic 25.3 1.6E+02 0.0035 24.5 4.8 42 82-124 57-99 (322)
121 PF14871 GHL6: Hypothetical gl 25.0 72 0.0016 22.7 2.5 19 90-108 3-21 (132)
122 COG1954 GlpP Glycerol-3-phosph 24.6 71 0.0015 24.3 2.5 21 89-109 110-130 (181)
123 PF01301 Glyco_hydro_35: Glyco 24.1 66 0.0014 26.1 2.4 18 89-106 26-43 (319)
124 TIGR00587 nfo apurinic endonuc 24.0 66 0.0014 25.2 2.3 18 91-108 15-32 (274)
125 PF08029 HisG_C: HisG, C-termi 24.0 56 0.0012 21.1 1.6 20 91-110 54-73 (75)
126 PLN02321 2-isopropylmalate syn 24.0 1.9E+02 0.004 26.2 5.3 46 63-109 84-131 (632)
127 PRK09989 hypothetical protein; 23.9 74 0.0016 24.4 2.6 17 92-108 20-36 (258)
128 PRK09997 hydroxypyruvate isome 23.7 70 0.0015 24.5 2.4 17 92-108 20-36 (258)
129 cd01096 Alkanal_monooxygenase 23.6 98 0.0021 24.7 3.3 29 81-109 272-300 (315)
130 TIGR03234 OH-pyruv-isom hydrox 23.5 72 0.0016 24.2 2.4 17 92-108 19-35 (254)
131 TIGR02764 spore_ybaN_pdaB poly 23.3 2.2E+02 0.0048 20.6 5.0 33 68-105 154-186 (191)
132 PF08986 DUF1889: Domain of un 23.2 56 0.0012 22.7 1.5 15 89-103 50-64 (119)
133 PRK11024 colicin uptake protei 23.1 1.3E+02 0.0027 21.3 3.5 26 81-107 112-137 (141)
134 TIGR03455 HisG_C-term ATP phos 23.0 1.1E+02 0.0024 20.7 3.0 22 89-110 76-97 (100)
135 COG3981 Predicted acetyltransf 23.0 1.2E+02 0.0025 23.1 3.3 30 78-107 107-137 (174)
136 COG0848 ExbD Biopolymer transp 22.9 1.3E+02 0.0027 21.6 3.4 27 80-107 105-131 (137)
137 PLN02706 glucosamine 6-phospha 22.7 1.1E+02 0.0024 20.9 3.0 25 83-107 101-125 (150)
138 TIGR03470 HpnH hopanoid biosyn 22.7 1.1E+02 0.0023 24.8 3.3 20 92-111 183-202 (318)
139 TIGR03628 arch_S11P archaeal r 22.7 95 0.0021 21.8 2.6 20 88-107 51-70 (114)
140 KOG0407|consensus 22.6 79 0.0017 22.4 2.2 24 83-106 58-83 (139)
141 PRK13210 putative L-xylulose 5 22.2 78 0.0017 24.3 2.4 16 92-107 21-36 (284)
142 PF06073 DUF934: Bacterial pro 22.0 92 0.002 21.7 2.5 19 89-108 60-78 (110)
143 PF00411 Ribosomal_S11: Riboso 21.8 77 0.0017 21.7 2.0 20 88-107 48-67 (110)
144 PRK12344 putative alpha-isopro 21.7 2.4E+02 0.0051 24.7 5.5 46 64-110 4-51 (524)
145 cd07941 DRE_TIM_LeuA3 Desulfob 21.4 1.3E+02 0.0029 23.6 3.6 19 91-109 24-43 (273)
146 cd01093 CRIB_PAK_like PAK (p21 21.1 40 0.00086 19.6 0.4 25 83-107 22-46 (46)
147 cd00923 Cyt_c_Oxidase_Va Cytoc 20.9 63 0.0014 22.4 1.4 25 81-105 75-99 (103)
148 cd00384 ALAD_PBGS Porphobilino 20.7 2.2E+02 0.0047 23.6 4.7 42 82-124 47-89 (314)
149 cd07947 DRE_TIM_Re_CS Clostrid 20.7 2.2E+02 0.0047 22.8 4.7 41 67-110 2-48 (279)
150 cd00019 AP2Ec AP endonuclease 20.4 89 0.0019 24.1 2.4 17 92-108 15-31 (279)
151 cd03414 CbiX_SirB_C Sirohydroc 20.2 1.1E+02 0.0023 20.4 2.5 23 92-114 50-72 (117)
152 CHL00041 rps11 ribosomal prote 20.1 1.2E+02 0.0025 21.2 2.7 21 87-107 60-80 (116)
153 PRK10076 pyruvate formate lyas 20.1 1.2E+02 0.0027 23.2 3.1 26 87-112 145-170 (213)
No 1
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-33 Score=241.46 Aligned_cols=119 Identities=24% Similarity=0.419 Sum_probs=105.9
Q ss_pred EeeEEEEEECCEEEEecCcceeeeeeCCC-ceeeee--ceEeCCCCCCCCCcCC-CCCCCCCCeeEEEeeccccccCCCc
Q psy14038 7 FYSILFYSVLFYSILRLSPWATYVTEPPV-VGHAYE--QRIWNPKPQDKHKWTS-SKPKKPDNLKIYESHVGICTQEQKC 82 (131)
Q Consensus 7 ~y~~l~~~~~g~~~~~~DPyA~~~~~~~~-~s~v~~--~~~~~~~~~~~~~w~~-~~~~~~~~~iIYE~Hv~~~~~~~~~ 82 (131)
.|+|-|.+.+|....++||||++.+.++. +|+|.+ .+.|+++ .|.. .+.+..++++|||+|||+|+++ +.
T Consensus 87 ~Yky~l~~~~g~~~~~~DP~a~~~~~~p~~aS~v~~~~~y~W~d~-----~~~~~~~~~~~e~~vIYElHvGs~~~~-~~ 160 (628)
T COG0296 87 RYKYELIDPSGQLRLKADPYARRQEVGPHTASQVVDLPDYEWQDE-----RWDRAWRGRFWEPIVIYELHVGSFTPD-RF 160 (628)
T ss_pred eEEEEEeCCCCceeeccCchhhccCCCCCCcceecCCCCcccccc-----cccccccCCCCCCceEEEEEeeeccCC-CC
Confidence 59999999999999999999999999987 888887 4889887 6721 2235678999999999999985 66
Q ss_pred cCHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 83 ASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 83 gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
-+|.++++++|||||+|||||||||||+||+.+.|||||+++||||+||
T Consensus 161 ~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sr 209 (628)
T COG0296 161 LGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSR 209 (628)
T ss_pred cCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceecccccc
Confidence 6888888888999999999999999999999999999999999999998
No 2
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=99.97 E-value=5e-31 Score=232.00 Aligned_cols=125 Identities=44% Similarity=0.783 Sum_probs=113.1
Q ss_pred EeeEEEEEECCEEEEecCcceeeeeeCCC-ceeeeeceEeCCCCCCCCCcCCCCCCCCCCeeEEEeeccccccCCCccCH
Q psy14038 7 FYSILFYSVLFYSILRLSPWATYVTEPPV-VGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASY 85 (131)
Q Consensus 7 ~y~~l~~~~~g~~~~~~DPyA~~~~~~~~-~s~v~~~~~~~~~~~~~~~w~~~~~~~~~~~iIYE~Hv~~~~~~~~~gty 85 (131)
.|+|.|...+|++.+++||||+.+++++. .+.+.++++|+++.++.|.|++++++++.+++|||+|||+++++++.|||
T Consensus 170 ~Yky~i~~~~g~~~~r~dpya~~~~~~p~~~~~~~~svv~dp~~~~~y~w~~~~~~~~~~~~IYE~Hvg~~~~~~~~gty 249 (758)
T PLN02447 170 RVKIRMETPDGRWVDRIPAWIKYAVQAPGEIGAPYNGVYWDPPEEEKYVFKHPRPPRPAALRIYEAHVGMSSEEPKVNSY 249 (758)
T ss_pred EEEEEEEeCCCcEEeecCchHheeeccCCccCCCCceEEeCCCCCCCCCCCCCCCCCCCCCEEEEEeCCcccCCCCCCCH
Confidence 79999998889999999999999999885 24567788899864456999998876778899999999999888889999
Q ss_pred HHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 86 EDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 86 ~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
+++++++|||||+|||||||||||+|++...+|||++++||||++|
T Consensus 250 ~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~ 295 (758)
T PLN02447 250 REFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSR 295 (758)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccc
Confidence 9999999999999999999999999999999999999999999987
No 3
>PRK14706 glycogen branching enzyme; Provisional
Probab=99.97 E-value=3.2e-31 Score=230.72 Aligned_cols=121 Identities=26% Similarity=0.516 Sum_probs=104.2
Q ss_pred EEeeEEEEEECCEEEEecCcceeeeeeCCC-ceeeee-ceEeCCCCCCCCCcCCCCC-CCCCCeeEEEeecccccc--CC
Q psy14038 6 LFYSILFYSVLFYSILRLSPWATYVTEPPV-VGHAYE-QRIWNPKPQDKHKWTSSKP-KKPDNLKIYESHVGICTQ--EQ 80 (131)
Q Consensus 6 ~~y~~l~~~~~g~~~~~~DPyA~~~~~~~~-~s~v~~-~~~~~~~~~~~~~w~~~~~-~~~~~~iIYE~Hv~~~~~--~~ 80 (131)
.+|+|.|...+|+..+++||||++++.+++ +|++.+ .+.|.++ .|+.++. +..++++|||+|||+|+. ++
T Consensus 87 ~~Yky~I~~~~g~~~~~~DPYa~~~~~~~~~~svv~~~~~~w~d~-----~w~~~~~~~~~~~~~IYE~Hvg~f~~~~~g 161 (639)
T PRK14706 87 QRYKFRVTGAAGQTVDKMDPYGSFFEVRPNTASIIWEDRFEWTDT-----RWMSSRTAGFDQPISIYEVHVGSWARRDDG 161 (639)
T ss_pred CEEEEEEECCCCCEEeccCcceEEEecCCCCceEECCCCCCCCCc-----ccccccCCccCCCcEEEEEehhhcccCCCC
Confidence 479999887788999999999999999886 677654 4677766 6765543 345679999999999964 45
Q ss_pred CccCHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 81 KCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 81 ~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
.++||+++++++++|||+|||||||||||+|++..++|||++++||||++|
T Consensus 162 ~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~ 212 (639)
T PRK14706 162 WFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSR 212 (639)
T ss_pred CccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccc
Confidence 678999999998899999999999999999999999999999999999987
No 4
>PRK12568 glycogen branching enzyme; Provisional
Probab=99.97 E-value=1e-30 Score=229.40 Aligned_cols=121 Identities=22% Similarity=0.435 Sum_probs=107.6
Q ss_pred EEeeEEEEEECCEEEEecCcceeeeeeCCC-ceeeee--ceEeCCCCCCCCCcCCCCCC--CCCCeeEEEeecccccc--
Q psy14038 6 LFYSILFYSVLFYSILRLSPWATYVTEPPV-VGHAYE--QRIWNPKPQDKHKWTSSKPK--KPDNLKIYESHVGICTQ-- 78 (131)
Q Consensus 6 ~~y~~l~~~~~g~~~~~~DPyA~~~~~~~~-~s~v~~--~~~~~~~~~~~~~w~~~~~~--~~~~~iIYE~Hv~~~~~-- 78 (131)
.+|+|.|...+|+..+++||||++++.++. +|++.+ .+.|++. +|+.+|.+ ..++++|||+|||+|+.
T Consensus 187 ~~YKYeI~~~~G~~~~k~DPYA~~~e~~p~~asvV~~~~~~~W~d~-----~W~~~r~~~~~~~~~~IYEvHvgsf~~~~ 261 (730)
T PRK12568 187 ARYKYAITAADGRVLLKADPVARQTELPPATASVVPSAAAFAWTDA-----AWMARRDPAAVPAPLSIYEVHAASWRRDG 261 (730)
T ss_pred CEEEEEEEcCCCeEeecCCCcceEeecCCCCCeEEcCCCCCCCCCh-----hhhhcccccCCCCCcEEEEEEhHHhcCCC
Confidence 379999988899999999999999999886 788875 4788887 78876643 57899999999999974
Q ss_pred CCCccCHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 79 EQKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 79 ~~~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
.+..++|+++++++|||||+|||||||||||+|++..++|||++++||||++|
T Consensus 262 ~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~ 314 (730)
T PRK12568 262 HNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTAR 314 (730)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcc
Confidence 34578999999999999999999999999999999999999999999999987
No 5
>PRK14705 glycogen branching enzyme; Provisional
Probab=99.96 E-value=2.9e-30 Score=235.69 Aligned_cols=118 Identities=25% Similarity=0.468 Sum_probs=106.6
Q ss_pred EEeeEEEEEECCEEEEecCcceeeeeeCCC-ceeeee-ceEeCCCCCCCCCcCCCCC---CCCCCeeEEEeeccccccCC
Q psy14038 6 LFYSILFYSVLFYSILRLSPWATYVTEPPV-VGHAYE-QRIWNPKPQDKHKWTSSKP---KKPDNLKIYESHVGICTQEQ 80 (131)
Q Consensus 6 ~~y~~l~~~~~g~~~~~~DPyA~~~~~~~~-~s~v~~-~~~~~~~~~~~~~w~~~~~---~~~~~~iIYE~Hv~~~~~~~ 80 (131)
.+|+|.|...+|++.+++||||++++.++. +|+|.+ .+.|+++ +|+.+|. +..++++|||+|||+|++
T Consensus 688 ~~Yky~i~~~~g~~~~k~DPyA~~~e~~p~~aS~V~d~~~~w~d~-----~W~~~r~~~~~~~~p~~IYEvHvgsf~~-- 760 (1224)
T PRK14705 688 ACYKFEILTKAGQWVEKADPLAFGTEVPPLTASRVVEASYAFKDA-----EWMSARAERDPHNSPMSVYEVHLGSWRL-- 760 (1224)
T ss_pred CEEEEEEEcCCCcEEecCCccccccccCCCCCeEEeCCCCCcCCh-----hhhhccccCCCCcCCcEEEEEEeccccc--
Confidence 479999998899999999999999999886 789887 5789887 8987653 235889999999999976
Q ss_pred CccCHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 81 KCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 81 ~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
.+||+++++++|||||+|||||||||||+||+..+||||++++||||++|
T Consensus 761 -~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~r 810 (1224)
T PRK14705 761 -GLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSR 810 (1224)
T ss_pred -CCchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcc
Confidence 37999999998999999999999999999999999999999999999987
No 6
>KOG0470|consensus
Probab=99.96 E-value=6.7e-30 Score=221.52 Aligned_cols=123 Identities=43% Similarity=0.725 Sum_probs=101.7
Q ss_pred eeEEEEEECCEEEEecCcceeeeeeCCCceeeeeceEeCCCCCCCCCcCCCCCCCCC-CeeEEEeeccccc-cCCCccC-
Q psy14038 8 YSILFYSVLFYSILRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPD-NLKIYESHVGICT-QEQKCAS- 84 (131)
Q Consensus 8 y~~l~~~~~g~~~~~~DPyA~~~~~~~~~s~v~~~~~~~~~~~~~~~w~~~~~~~~~-~~iIYE~Hv~~~~-~~~~~gt- 84 (131)
.++++.+..|+...++||||+.+.+.+. .....+..|+|++...|+|+.++|+.++ +++|||+|||+|+ .+++..|
T Consensus 172 ~~~~~~~p~g~~~~~~~~~~~~~~~~~~-~~q~~~~~~~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgfS~~E~~v~~~ 250 (757)
T KOG0470|consen 172 SKIHLSTPYGETCKRIPAWATYVDQEGE-GPQYYGIYWDPSPEFDWGFKHSRPKIPESSLRIYELHVRGFSSHESKVNTR 250 (757)
T ss_pred eEEEeecCCcceeeccChHhhcccCCCc-ccceeeccCCCCCcccccccCCCCCCChhheEEEEEeeccccCCCCccccc
Confidence 3567778889999999999999998885 4556678899874344444455665555 9999999999885 3444334
Q ss_pred --HHHHHhhhhHHHHHcCCcEEEeccceec-CCCCCcCCCCCceeeccCC
Q psy14038 85 --YEDFVRVVIPRIVKQGYNAVQLMAIMEH-AYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 85 --y~~~~~~~l~ylk~LGvt~VeLmPv~e~-~~~~~WGY~~~~~fap~sR 131 (131)
|+++++|.|||||+||+||||||||+|| ....+|||+++|||||+||
T Consensus 251 ~gY~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssr 300 (757)
T KOG0470|consen 251 GGYLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSR 300 (757)
T ss_pred cchhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeeccccc
Confidence 9999999999999999999999999999 6888999999999999998
No 7
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=99.96 E-value=2.4e-29 Score=218.09 Aligned_cols=118 Identities=27% Similarity=0.547 Sum_probs=104.2
Q ss_pred EEeeEEEEEECCEEEEecCcceeeeeeCCC-ceeeee--ceEeCCCCCCCCCcCCCCCC---CCCCeeEEEeeccccccC
Q psy14038 6 LFYSILFYSVLFYSILRLSPWATYVTEPPV-VGHAYE--QRIWNPKPQDKHKWTSSKPK---KPDNLKIYESHVGICTQE 79 (131)
Q Consensus 6 ~~y~~l~~~~~g~~~~~~DPyA~~~~~~~~-~s~v~~--~~~~~~~~~~~~~w~~~~~~---~~~~~iIYE~Hv~~~~~~ 79 (131)
.+|+|.|...+|...+++||||+++..+++ +|++.+ .+.|+|. .|+.++++ ..++++|||+|||+|+++
T Consensus 78 ~~Y~y~v~~~~g~~~~~~DPYA~~~~~~~~~~s~v~d~~~~~w~~~-----~w~~~~~~~~~~~~~~~iYe~hv~~~~~~ 152 (613)
T TIGR01515 78 ELYKYEIVTNNGEIRLKADPYAFYAEVRPNTASLVYDLEGYSWQDQ-----KWQEKRKAKTPYEKPVSIYELHLGSWRHG 152 (613)
T ss_pred CEEEEEEECCCCcEEEeCCCCEeeeccCCCCcEEEECCccCccCch-----hhhhcccccCcccCCceEEEEehhhccCC
Confidence 479999887778888999999999998886 788886 5789887 89876542 346799999999999764
Q ss_pred CCccCHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 80 QKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 80 ~~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
|||+++++++|+|||+||||||+||||+|++...+|||++++||||++|
T Consensus 153 ---g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~ 201 (613)
T TIGR01515 153 ---LSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSR 201 (613)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccc
Confidence 8999999997799999999999999999999989999999999999986
No 8
>PLN02960 alpha-amylase
Probab=99.96 E-value=5.7e-29 Score=220.52 Aligned_cols=124 Identities=43% Similarity=0.793 Sum_probs=104.6
Q ss_pred EEeeEEEEEECCEEEEecCcceeeeeeCCCceeeeeceEeCCCCCCCCCcCCCCCCCCCCeeEEEeeccccccCCCccCH
Q psy14038 6 LFYSILFYSVLFYSILRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASY 85 (131)
Q Consensus 6 ~~y~~l~~~~~g~~~~~~DPyA~~~~~~~~~s~v~~~~~~~~~~~~~~~w~~~~~~~~~~~iIYE~Hv~~~~~~~~~gty 85 (131)
.+|+|.|.+.+|. .+++||||++++..++ +.....++|++.....|+|++++++.+++++|||+|||+|+++++.|||
T Consensus 338 ~~Yky~v~~~~g~-~~~vdpyA~~~qp~~~-~~~~~~v~~d~~~~~~y~W~~~~p~~~~~~vIYElHvg~~~~e~~~gtf 415 (897)
T PLN02960 338 SKYRVYFNTPDGP-LERVPAWATYVLPDPD-GKQWYAIHWEPPPEEAYKWKFERPKVPKSLRIYECHVGISGSEPKISSF 415 (897)
T ss_pred CEEEEEEEeCCCc-eEECCCcceeEeecCC-CccceEEEeCCCCCCCCCCCCCCCCCCCCcEEEEEecccccCCCCCCCH
Confidence 4799998777664 6889999999977664 2222345677532246899988766678999999999999888888999
Q ss_pred HHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 86 EDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 86 ~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
+++++++|||||+|||||||||||+|++...+|||++++||||++|
T Consensus 416 ~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~ 461 (897)
T PLN02960 416 KEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSR 461 (897)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccc
Confidence 9999999999999999999999999999999999999999999986
No 9
>PRK05402 glycogen branching enzyme; Provisional
Probab=99.96 E-value=6.3e-29 Score=218.85 Aligned_cols=121 Identities=26% Similarity=0.508 Sum_probs=105.2
Q ss_pred EEeeEEEEEECCEEEEecCcceeeeeeCCC-ceeeee--ceEeCCCCCCCCCcCCCCC---CCCCCeeEEEeeccccc--
Q psy14038 6 LFYSILFYSVLFYSILRLSPWATYVTEPPV-VGHAYE--QRIWNPKPQDKHKWTSSKP---KKPDNLKIYESHVGICT-- 77 (131)
Q Consensus 6 ~~y~~l~~~~~g~~~~~~DPyA~~~~~~~~-~s~v~~--~~~~~~~~~~~~~w~~~~~---~~~~~~iIYE~Hv~~~~-- 77 (131)
..|+|.+...+|++..++||||++++.++. +|++.+ .+.|++. .|+..|+ +..++++|||+|||+|+
T Consensus 181 ~~Y~y~v~~~~g~~~~~~DPYa~~~~~~~~~~s~v~d~~~~~w~~~-----~~~~~~~~~~~~~~~~~iYe~hv~~f~~~ 255 (726)
T PRK05402 181 ELYKFEILTADGELLLKADPYAFAAEVRPATASIVADLSQYQWNDA-----AWMEKRAKRNPLDAPISIYEVHLGSWRRH 255 (726)
T ss_pred CEEEEEEeCCCCcEeecCCCceEEEecCCCCcEEEeCCccCCCCCc-----chhhcccccCcccCCcEEEEEehhhhccC
Confidence 378999877778999999999999999876 788776 4778776 6776554 34688999999999996
Q ss_pred -cCCCccCHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 78 -QEQKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 78 -~~~~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
+++++|||+++++++|||||+||||||+||||+|++...+|||++++||||++|
T Consensus 256 ~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~ 310 (726)
T PRK05402 256 EDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSR 310 (726)
T ss_pred CCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcc
Confidence 346789999999998899999999999999999999999999999999999986
No 10
>PRK12313 glycogen branching enzyme; Provisional
Probab=99.95 E-value=2.4e-28 Score=212.29 Aligned_cols=120 Identities=28% Similarity=0.573 Sum_probs=102.8
Q ss_pred EeeEEEEEECCEEEEecCcceeeeeeCCC-ceeeee--ceEeCCCCCCCCCcCCCCC---CCCCCeeEEEeecccccc--
Q psy14038 7 FYSILFYSVLFYSILRLSPWATYVTEPPV-VGHAYE--QRIWNPKPQDKHKWTSSKP---KKPDNLKIYESHVGICTQ-- 78 (131)
Q Consensus 7 ~y~~l~~~~~g~~~~~~DPyA~~~~~~~~-~s~v~~--~~~~~~~~~~~~~w~~~~~---~~~~~~iIYE~Hv~~~~~-- 78 (131)
.|+|.+...+|++..+.||||+++..++. +|++.+ .+.|+++ .|+..++ +..++++|||+|||+|+.
T Consensus 88 ~Y~y~v~~~~g~~~~~~DPya~~~~~~~~~~s~v~d~~~~~w~~~-----~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~ 162 (633)
T PRK12313 88 LYKYHISRQDGYQVEKIDPFAFYFEARPGTASIVWDLPEYKWKDG-----LWLARRKRWNALDRPISIYEVHLGSWKRNE 162 (633)
T ss_pred EEEEEEECCCCeEEecCCCceEEEecCCCCceEECCCcccCCCCh-----hhhhccccCCCCCCCceEEEEehhccccCC
Confidence 68898877789999999999999998765 677776 3677766 6765544 234789999999999864
Q ss_pred CCCccCHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 79 EQKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 79 ~~~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
+++.|||+++++++|||||+||||||+||||+|++...+|||++++||||++|
T Consensus 163 ~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~ 215 (633)
T PRK12313 163 DGRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSR 215 (633)
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCC
Confidence 46789999999998899999999999999999999999999999999999986
No 11
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=99.95 E-value=3.2e-28 Score=217.49 Aligned_cols=103 Identities=14% Similarity=0.270 Sum_probs=80.6
Q ss_pred EEeeEEEEEEC---C--EEEEecCcceeeeeeCCCceeeeec--eEeCCCCCCCCCcCCCC---CC--CCCCeeEEEeec
Q psy14038 6 LFYSILFYSVL---F--YSILRLSPWATYVTEPPVVGHAYEQ--RIWNPKPQDKHKWTSSK---PK--KPDNLKIYESHV 73 (131)
Q Consensus 6 ~~y~~l~~~~~---g--~~~~~~DPyA~~~~~~~~~s~v~~~--~~~~~~~~~~~~w~~~~---~~--~~~~~iIYE~Hv 73 (131)
.||+|.|..-+ | ++.+++||||++++.+...|++.|. ..|.|. .|+..+ ++ ++++++|||+||
T Consensus 186 ~~Y~Y~V~v~~p~~G~v~~~~v~DPYA~als~n~~~S~VvDl~~~~~~p~-----~W~~~~~p~p~~~~~~d~iIYElHV 260 (898)
T TIGR02103 186 AYYRYEVTVYHPSTGKVETYLVTDPYSVSLSANSEYSQVVDLNDPALKPE-----GWDALAMPKPQLASFADMVLYELHI 260 (898)
T ss_pred CEeEEEEEEecCCCCeECCeEEeCcCcceEcCCCCCeEEeCCccccCCCc-----chhhcccccCCcCCCcccEEEEEec
Confidence 48999976332 5 3578999999999988878888873 567776 898754 22 579999999999
Q ss_pred ccccc------CCCccCHHHHHhh---hhHHHH---HcCCcEEEeccceecC
Q psy14038 74 GICTQ------EQKCASYEDFVRV---VIPRIV---KQGYNAVQLMAIMEHA 113 (131)
Q Consensus 74 ~~~~~------~~~~gty~~~~~~---~l~ylk---~LGvt~VeLmPv~e~~ 113 (131)
|+|+. +..+|||++++++ +++||| +|||||||||||+++.
T Consensus 261 RDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~ 312 (898)
T TIGR02103 261 RDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIA 312 (898)
T ss_pred cccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcC
Confidence 99962 2468999999985 455555 6699999999999874
No 12
>PLN02877 alpha-amylase/limit dextrinase
Probab=99.95 E-value=1e-27 Score=214.85 Aligned_cols=121 Identities=17% Similarity=0.209 Sum_probs=94.2
Q ss_pred EEeeEEEEEEC---C--EEEEecCcceeeeeeCCCceeeee--ceEeCCCCCCCCCcCCC---CC--CCCCCeeEEEeec
Q psy14038 6 LFYSILFYSVL---F--YSILRLSPWATYVTEPPVVGHAYE--QRIWNPKPQDKHKWTSS---KP--KKPDNLKIYESHV 73 (131)
Q Consensus 6 ~~y~~l~~~~~---g--~~~~~~DPyA~~~~~~~~~s~v~~--~~~~~~~~~~~~~w~~~---~~--~~~~~~iIYE~Hv 73 (131)
.||+|.|..-+ | ++.+++||||++++.++..|++.| ...|+|+ .|+.. +| .++++++|||+||
T Consensus 273 ~~Y~Y~V~v~~p~~g~~~~~~v~DPYA~als~ng~~S~vvDl~~~~~~p~-----gW~~~~~~~p~~~~~~D~VIYElHV 347 (970)
T PLN02877 273 CYYVYEVSVYHPSTGKVETCYANDPYARGLSADGRRTLLVDLDSDDLKPE-----GWDNLAKEKPCLLSFSDISIYELHV 347 (970)
T ss_pred CeeEEEEeecccCCCcccccccCCccceEEecCCCceEEECCccccCCCh-----hhhhcccccCccCCCcccEEEEEec
Confidence 48999975321 3 346789999999998877787776 3457776 89863 33 2468999999999
Q ss_pred ccccc------CCCccCHHHHHhh---hhHHHHHc---CCcEEEeccceecCC---------------------------
Q psy14038 74 GICTQ------EQKCASYEDFVRV---VIPRIVKQ---GYNAVQLMAIMEHAY--------------------------- 114 (131)
Q Consensus 74 ~~~~~------~~~~gty~~~~~~---~l~ylk~L---Gvt~VeLmPv~e~~~--------------------------- 114 (131)
|+|+. ...+|||++++++ +++|||+| ||||||||||++|..
T Consensus 348 RDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q 427 (970)
T PLN02877 348 RDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQ 427 (970)
T ss_pred cccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhh
Confidence 99973 3468999999986 45565555 999999999999842
Q ss_pred ----------CCCcCCCCCceeeccCC
Q psy14038 115 ----------YASFGYQVTSFFAASSR 131 (131)
Q Consensus 115 ----------~~~WGY~~~~~fap~sR 131 (131)
.+||||+|.+||||+++
T Consensus 428 ~~v~~~~~~d~yNWGYDP~~YfaPEgS 454 (970)
T PLN02877 428 AAITAIQDDDGYNWGYNPVLWGVPKGS 454 (970)
T ss_pred hcccccccCCCCCCCCCccccCCCCcc
Confidence 28999999999999975
No 13
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=99.94 E-value=9.5e-28 Score=207.78 Aligned_cols=120 Identities=20% Similarity=0.315 Sum_probs=96.4
Q ss_pred EEeeEEEEEECCEEEEecCcceeeeeeCCCceeeeeceEeCCCCCCCCCcCCCC-C--CCCCCeeEEEeeccccccC---
Q psy14038 6 LFYSILFYSVLFYSILRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK-P--KKPDNLKIYESHVGICTQE--- 79 (131)
Q Consensus 6 ~~y~~l~~~~~g~~~~~~DPyA~~~~~~~~~s~v~~~~~~~~~~~~~~~w~~~~-~--~~~~~~iIYE~Hv~~~~~~--- 79 (131)
.+|+|.+.. +|...+++||||+++..++..|++.+...+++ ++|+.++ + +++++++|||+|||+|+..
T Consensus 71 ~~Y~y~v~~-~~~~~~~~DPya~~~~~~~~~s~v~d~~~~~~-----~~w~~~~~~~~~~~~~~vIYElhv~~ft~~~~~ 144 (605)
T TIGR02104 71 YFYTYQVCI-NGKWRETVDPYAKAVTVNGKRGAVIDLERTNP-----EGWEKDHRPRLENPEDAIIYELHIRDFSIHENS 144 (605)
T ss_pred CEEEEEEEc-CCCeEEEcCCCcceeccCCCcEEEEcccccCc-----cCcccccCCCCCChhHcEEEEEecchhccCCCC
Confidence 378888654 67777899999999988876678776444433 3787764 3 3578999999999999742
Q ss_pred --CCccCHHHHHhh----------hhHHHHHcCCcEEEeccceecCC--------CCCcCCCCCceeeccCC
Q psy14038 80 --QKCASYEDFVRV----------VIPRIVKQGYNAVQLMAIMEHAY--------YASFGYQVTSFFAASSR 131 (131)
Q Consensus 80 --~~~gty~~~~~~----------~l~ylk~LGvt~VeLmPv~e~~~--------~~~WGY~~~~~fap~sR 131 (131)
..+|||++++++ .|+|||+||||||+||||+|++. .++|||++++||||++|
T Consensus 145 ~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ 216 (605)
T TIGR02104 145 GVKNKGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGS 216 (605)
T ss_pred CcCCCCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChh
Confidence 237999999876 49999999999999999999875 25799999999999864
No 14
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=99.94 E-value=2.9e-27 Score=206.84 Aligned_cols=108 Identities=26% Similarity=0.424 Sum_probs=85.9
Q ss_pred EEecCcceeeeeeCCCce---e---------------------eeeceEeCCCCCCCCCcCCCCCC--CCCCeeEEEeec
Q psy14038 20 ILRLSPWATYVTEPPVVG---H---------------------AYEQRIWNPKPQDKHKWTSSKPK--KPDNLKIYESHV 73 (131)
Q Consensus 20 ~~~~DPyA~~~~~~~~~s---~---------------------v~~~~~~~~~~~~~~~w~~~~~~--~~~~~iIYE~Hv 73 (131)
...+||||+.+.++...+ . ...+++.++ .++|+.++++ +++++||||+||
T Consensus 104 k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~Ksvv~~~----~~~w~~~~~~~~p~~~~vIYE~HV 179 (697)
T COG1523 104 KLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPYPKSVVIDP----LFDWENDKPPRIPWEDTVIYEAHV 179 (697)
T ss_pred cccccceeEEeccccccCccccccccccccccccCccccccccCCceEEecc----ccccccCCCCCCCccceEEEEeee
Confidence 578899999998765311 0 111333333 2689988654 579999999999
Q ss_pred cccc------cCCCccCHHHHHhh-hhHHHHHcCCcEEEeccceecCC---------CCCcCCCCCceeeccCC
Q psy14038 74 GICT------QEQKCASYEDFVRV-VIPRIVKQGYNAVQLMAIMEHAY---------YASFGYQVTSFFAASSR 131 (131)
Q Consensus 74 ~~~~------~~~~~gty~~~~~~-~l~ylk~LGvt~VeLmPv~e~~~---------~~~WGY~~~~~fap~sR 131 (131)
|+|| ++..+|||++++++ +|+|||+|||||||||||+++.. .++|||||.+||||+.|
T Consensus 180 r~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~ 253 (697)
T COG1523 180 RDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGR 253 (697)
T ss_pred cccccCCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCcc
Confidence 9997 35678999999986 79999999999999999998853 47999999999999976
No 15
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=99.93 E-value=3.5e-26 Score=207.79 Aligned_cols=121 Identities=20% Similarity=0.337 Sum_probs=91.5
Q ss_pred EEeeEEEEEECCEEEEecCcceeeeee-CC---------CceeeeeceEeCCCCCCCCCcCCCCC-CCCCCeeEEEeecc
Q psy14038 6 LFYSILFYSVLFYSILRLSPWATYVTE-PP---------VVGHAYEQRIWNPKPQDKHKWTSSKP-KKPDNLKIYESHVG 74 (131)
Q Consensus 6 ~~y~~l~~~~~g~~~~~~DPyA~~~~~-~~---------~~s~v~~~~~~~~~~~~~~~w~~~~~-~~~~~~iIYE~Hv~ 74 (131)
.||+|.|. ..+...+++||||+++.. +. ..+++.|....+|+ .++|...++ .+.++++|||+|||
T Consensus 385 ~~Y~Y~V~-~~~~~~~~~DPYA~al~~~n~~~~~~~~~~~ks~vvD~~~~~p~---~~~~~~~~~~~~~~d~vIYElHVr 460 (1111)
T TIGR02102 385 YYYHYEIT-RGGDKVLALDPYAKSLAAWNDATSDDQIKVAKAAFVDPSSLGPQ---ELDFAKIENFKKREDAIIYEAHVR 460 (1111)
T ss_pred ceEEEEEE-CCCceEEEeChhheEEeccCcccccccCCCCceEEEcCcccCcc---ccccccccccCCccceEEEEEech
Confidence 48999965 467888999999999985 31 12444443222232 467775333 35799999999999
Q ss_pred ccccC--------CCccCHHHHHhhhhHHHHHcCCcEEEeccceecC------------------CCCCcCCCCCceeec
Q psy14038 75 ICTQE--------QKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHA------------------YYASFGYQVTSFFAA 128 (131)
Q Consensus 75 ~~~~~--------~~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~------------------~~~~WGY~~~~~fap 128 (131)
+|+.. +.+|||++++++ |+|||+|||||||||||+++. ..++|||+|.+||||
T Consensus 461 dFt~d~~~~~~~~~~~Gtf~gl~ek-LdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfap 539 (1111)
T TIGR02102 461 DFTSDPAIAGDLTAQFGTFAAFVEK-LDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFAL 539 (1111)
T ss_pred hhCcCCCCCcccccCCcCHHHHHHh-HHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCccc
Confidence 99732 247999999999 999999999999999999752 124799999999999
Q ss_pred cCC
Q psy14038 129 SSR 131 (131)
Q Consensus 129 ~sR 131 (131)
+++
T Consensus 540 e~~ 542 (1111)
T TIGR02102 540 SGM 542 (1111)
T ss_pred ccc
Confidence 864
No 16
>PRK03705 glycogen debranching enzyme; Provisional
Probab=99.93 E-value=3.6e-26 Score=199.69 Aligned_cols=122 Identities=20% Similarity=0.225 Sum_probs=91.2
Q ss_pred EEeeEEEEEE----CC----EEEEecCcceeeeeeCCC---------------ce--eeeeceEeCCCCCCCCCcCCCCC
Q psy14038 6 LFYSILFYSV----LF----YSILRLSPWATYVTEPPV---------------VG--HAYEQRIWNPKPQDKHKWTSSKP 60 (131)
Q Consensus 6 ~~y~~l~~~~----~g----~~~~~~DPyA~~~~~~~~---------------~s--~v~~~~~~~~~~~~~~~w~~~~~ 60 (131)
.+|.|.|.-. .| ...+++||||++++.+.. .+ ....+++.++ .|+|+++++
T Consensus 68 ~~Y~yrv~g~~~p~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~----~~~W~~~~~ 143 (658)
T PRK03705 68 LRYGYRVHGPWQPAQGHRFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVDD----HYDWEDDAP 143 (658)
T ss_pred CEEEEEEccccCcccCcccCCCcEecCcCceEEccccccCccccccccCCccccccccCCceEEecC----CCCCCCCCC
Confidence 4677776521 12 246789999999986421 01 1122344443 478988654
Q ss_pred C--CCCCeeEEEeecccccc------CCCccCHHHHHhh-hhHHHHHcCCcEEEeccceecCCC---------CCcCCCC
Q psy14038 61 K--KPDNLKIYESHVGICTQ------EQKCASYEDFVRV-VIPRIVKQGYNAVQLMAIMEHAYY---------ASFGYQV 122 (131)
Q Consensus 61 ~--~~~~~iIYE~Hv~~~~~------~~~~gty~~~~~~-~l~ylk~LGvt~VeLmPv~e~~~~---------~~WGY~~ 122 (131)
+ +.+++||||+|||+|+. ...+|||++++++ .|+|||+||||||+||||+++... ++|||+|
T Consensus 144 p~~~~~~~vIYE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~ 223 (658)
T PRK03705 144 PRTPWGSTVIYEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNP 223 (658)
T ss_pred CCCCccccEEEEEehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCccc
Confidence 2 56899999999999963 2467999999974 599999999999999999998643 6899999
Q ss_pred CceeeccCC
Q psy14038 123 TSFFAASSR 131 (131)
Q Consensus 123 ~~~fap~sR 131 (131)
.+||||++|
T Consensus 224 ~~yfa~d~~ 232 (658)
T PRK03705 224 LAMFALDPA 232 (658)
T ss_pred ccccccccc
Confidence 999999975
No 17
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=99.93 E-value=1e-25 Score=193.24 Aligned_cols=109 Identities=17% Similarity=0.324 Sum_probs=87.8
Q ss_pred EeeEEEEEECCEEEEecCcceeeeeeCCC-ceeeee--ceEeCCCCCCCCCcCCCCCCCCCCeeEEEeeccccccCCCcc
Q psy14038 7 FYSILFYSVLFYSILRLSPWATYVTEPPV-VGHAYE--QRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCA 83 (131)
Q Consensus 7 ~y~~l~~~~~g~~~~~~DPyA~~~~~~~~-~s~v~~--~~~~~~~~~~~~~w~~~~~~~~~~~iIYE~Hv~~~~~~~~~g 83 (131)
+|+|.| +| ...++||||+++....+ .|++.+ .+.|++. .|.. ++.++++|||+|||+|++ .|
T Consensus 44 ~Y~y~v---~g-~~~v~DPya~~~~~~~~~~S~V~d~~~~~w~~~-----~~~~---~~~~~~viYE~hv~~f~~---~G 108 (542)
T TIGR02402 44 RYGYVL---DD-GTPVPDPASRRQPDGVHGPSQVVDPDRYAWQDT-----GWRG---RPLEEAVIYELHVGTFTP---EG 108 (542)
T ss_pred EEEEEE---ee-eEEecCccccccccCCCCCeEEecCcccCCCCc-----cccC---CCccccEEEEEEhhhcCC---CC
Confidence 677765 34 46899999999765443 466554 2344443 3332 357999999999999986 48
Q ss_pred CHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 84 SYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 84 ty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
||++++++ |||||+||||||+||||++++...+|||++++||+|++|
T Consensus 109 ~~~gi~~~-l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~ 155 (542)
T TIGR02402 109 TFDAAIEK-LPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNA 155 (542)
T ss_pred CHHHHHHh-hHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccc
Confidence 99999999 899999999999999999999889999999999999975
No 18
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=99.92 E-value=4.2e-25 Score=193.86 Aligned_cols=122 Identities=24% Similarity=0.350 Sum_probs=91.2
Q ss_pred EEeeEEEEEE----CC----EEEEecCcceeeeeeCCC--ce----------------------eeeeceEeCCCCCCCC
Q psy14038 6 LFYSILFYSV----LF----YSILRLSPWATYVTEPPV--VG----------------------HAYEQRIWNPKPQDKH 53 (131)
Q Consensus 6 ~~y~~l~~~~----~g----~~~~~~DPyA~~~~~~~~--~s----------------------~v~~~~~~~~~~~~~~ 53 (131)
.+|.|.+... +| ...+++||||+++..+.. .+ ....+++.++ .|
T Consensus 65 ~~Y~yrv~g~~~~~~g~~f~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~----~~ 140 (688)
T TIGR02100 65 QLYGYRVHGPYDPENGHRFNPNKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVDP----DF 140 (688)
T ss_pred CEEEEEEeeeeCCCCCcccCcCceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeCC----CC
Confidence 4788876532 12 346799999999986632 00 0112334443 37
Q ss_pred CcCCC--CC-CCCCCeeEEEeecccccc------CCCccCHHHHHhh-hhHHHHHcCCcEEEeccceecCCC--------
Q psy14038 54 KWTSS--KP-KKPDNLKIYESHVGICTQ------EQKCASYEDFVRV-VIPRIVKQGYNAVQLMAIMEHAYY-------- 115 (131)
Q Consensus 54 ~w~~~--~~-~~~~~~iIYE~Hv~~~~~------~~~~gty~~~~~~-~l~ylk~LGvt~VeLmPv~e~~~~-------- 115 (131)
+|+++ ++ .+++++||||+|||+|+. +..+|||++++++ .|||||+||||||+||||+++...
T Consensus 141 ~w~~~~~~p~~~~~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~ 220 (688)
T TIGR02100 141 DWGGDEQRPRTPWEDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGL 220 (688)
T ss_pred CCCCcccCCCCCccccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCC
Confidence 89875 33 356999999999999964 2457999999995 699999999999999999998653
Q ss_pred -CCcCCCCCceeeccCC
Q psy14038 116 -ASFGYQVTSFFAASSR 131 (131)
Q Consensus 116 -~~WGY~~~~~fap~sR 131 (131)
++|||+|.+||||+++
T Consensus 221 ~~ywGYd~~~y~a~d~~ 237 (688)
T TIGR02100 221 RNYWGYNTLGFFAPEPR 237 (688)
T ss_pred CCccCcCcccccccChh
Confidence 5799999999999975
No 19
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=99.84 E-value=3e-21 Score=177.68 Aligned_cols=120 Identities=19% Similarity=0.210 Sum_probs=88.0
Q ss_pred EeeEEEEEECCE--------EEEecCcceeeeeeCCC--cee----------------e--eeceEeCCCCCCCCCcCCC
Q psy14038 7 FYSILFYSVLFY--------SILRLSPWATYVTEPPV--VGH----------------A--YEQRIWNPKPQDKHKWTSS 58 (131)
Q Consensus 7 ~y~~l~~~~~g~--------~~~~~DPyA~~~~~~~~--~s~----------------v--~~~~~~~~~~~~~~~w~~~ 58 (131)
+|.|.+....+- ..+.+||||+++..+.. .++ + ..+++.+ .|+|+.+
T Consensus 75 ~Ygyrv~g~~~p~~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~~-----~~~W~~~ 149 (1221)
T PRK14510 75 RYGNRQEGPGGPGEGHRFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVPT-----PFTWAPR 149 (1221)
T ss_pred EEEEEeccCCCcccccccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceeec-----ccccCCC
Confidence 677776432211 25789999999987532 111 1 1122332 3689876
Q ss_pred CCC--CCCCeeEEEeecccccc------CCCccCHHHHHh-hhhHHHHHcCCcEEEeccceecCCC---------CCcCC
Q psy14038 59 KPK--KPDNLKIYESHVGICTQ------EQKCASYEDFVR-VVIPRIVKQGYNAVQLMAIMEHAYY---------ASFGY 120 (131)
Q Consensus 59 ~~~--~~~~~iIYE~Hv~~~~~------~~~~gty~~~~~-~~l~ylk~LGvt~VeLmPv~e~~~~---------~~WGY 120 (131)
+++ ++++++|||+|||+|+. ...+|||+++.+ +.|+|||+||||+|+||||+++..+ ++|||
T Consensus 150 ~~~~~~~~d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY 229 (1221)
T PRK14510 150 SPLHGDWDDSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGY 229 (1221)
T ss_pred CCCCCCcccCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCC
Confidence 542 56889999999999863 345799999983 3599999999999999999998643 57999
Q ss_pred CCCceeeccCC
Q psy14038 121 QVTSFFAASSR 131 (131)
Q Consensus 121 ~~~~~fap~sR 131 (131)
++.+||+|+++
T Consensus 230 ~~~~yfa~dp~ 240 (1221)
T PRK14510 230 NTVAFLAPDPR 240 (1221)
T ss_pred CCCCCCCcChh
Confidence 99999999975
No 20
>PLN03244 alpha-amylase; Provisional
Probab=99.56 E-value=8.5e-15 Score=129.61 Aligned_cols=83 Identities=39% Similarity=0.695 Sum_probs=74.0
Q ss_pred EeeEEEEEECCEEEEecCcceeeeeeCCCceeeeeceEeCCCCCCCCCcCCCCCCCCCCeeEEEeeccccccCCCccCHH
Q psy14038 7 FYSILFYSVLFYSILRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYE 86 (131)
Q Consensus 7 ~y~~l~~~~~g~~~~~~DPyA~~~~~~~~~s~v~~~~~~~~~~~~~~~w~~~~~~~~~~~iIYE~Hv~~~~~~~~~gty~ 86 (131)
-|++.+.+.+|. ++++++||+.+.+++. ...++++.|+|++.+.|.|++++|+++..+.|||+|||+++++.+.|||+
T Consensus 344 ~~k~~~~~~~g~-~~RiPaw~~~~~~~~~-~~~~~~~~w~P~~~~~y~~k~~~p~~p~~lrIYE~HvGms~~e~kv~ty~ 421 (872)
T PLN03244 344 KYRLYFNTPDGP-LERIPAWATYVLPDDD-GKQAFAIHWEPPPEAAHKWKNMKPKVPESLRIYECHVGISGSEPKISSFE 421 (872)
T ss_pred eEEEEEEcCCCC-cccCCCCeeeEEecCC-CCceeeeEeCCCcccCCccCCCCCCCCCCceEEEEEeeecCCCCCcccHH
Confidence 378888888888 8999999999999986 44778899999866779999999888899999999999999999999999
Q ss_pred HHHhh
Q psy14038 87 DFVRV 91 (131)
Q Consensus 87 ~~~~~ 91 (131)
+++++
T Consensus 422 eF~~~ 426 (872)
T PLN03244 422 EFTEK 426 (872)
T ss_pred HHhhc
Confidence 99986
No 21
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=99.37 E-value=6.7e-13 Score=113.98 Aligned_cols=66 Identities=17% Similarity=0.278 Sum_probs=58.2
Q ss_pred CCeeEEEeecccccc--CCCccCHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 64 DNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 64 ~~~iIYE~Hv~~~~~--~~~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
++.+|||+++++|.. .+..|++++++++ |||||+||||+|.||||++.+. .++||++..||+++++
T Consensus 4 ~~~viYqi~~~~f~d~~~~~~Gdl~gi~~~-Ldyl~~LGv~~i~L~Pi~~~~~-~~~gY~~~dy~~vd~~ 71 (539)
T TIGR02456 4 KDAVFYEVHVRSFFDSNGDGIGDFPGLTSK-LDYLKWLGVDALWLLPFFQSPL-RDDGYDVSDYRAILPE 71 (539)
T ss_pred ccceEEEEehhHhhcCCCCCccCHHHHHHh-HHHHHHCCCCEEEECCCcCCCC-CCCCCCcccccccChh
Confidence 578999999999953 2347999999999 9999999999999999998764 4699999999999875
No 22
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=99.30 E-value=2.3e-12 Score=99.98 Aligned_cols=47 Identities=21% Similarity=0.456 Sum_probs=43.5
Q ss_pred cCHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 83 ASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 83 gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
|++++++++ |+|||+||||+|+||||++.+. .+|||++..|+++++|
T Consensus 1 Gd~~gi~~k-Ldyl~~lGv~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~ 47 (316)
T PF00128_consen 1 GDFRGIIDK-LDYLKDLGVNAIWLSPIFESPN-GYHGYDPSDYYAVDPR 47 (316)
T ss_dssp SSHHHHHHT-HHHHHHHTESEEEESS-EESSS-STTTTSESEEEEESTT
T ss_pred CCHHHHHHh-hHHHHHcCCCceeccccccccc-ccccccceeeeccccc
Confidence 799999999 9999999999999999999766 8999999999999886
No 23
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=99.21 E-value=1.6e-11 Score=105.98 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=57.8
Q ss_pred CCCeeEEEeecccccc--CCCccCHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 63 PDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 63 ~~~~iIYE~Hv~~~~~--~~~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
.++.||||+++++|.. ....|++++++++ |+|||+||||+|.||||++.+. ..|||++..|++++++
T Consensus 8 ~~~~v~Yqi~~~~f~d~~~~~~Gdl~gi~~~-ldyl~~lGv~~i~l~P~~~~~~-~~~gY~~~d~~~id~~ 76 (551)
T PRK10933 8 WQNGVIYQIYPKSFQDTTGSGTGDLRGVTQR-LDYLQKLGVDAIWLTPFYVSPQ-VDNGYDVANYTAIDPT 76 (551)
T ss_pred hhcCeEEEEEchHhhcCCCCCCcCHHHHHHh-hHHHHhCCCCEEEECCCCCCCC-CCCCCCcccCCCcCcc
Confidence 3677999999999853 3457999999999 9999999999999999997654 3589999999999864
No 24
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=99.21 E-value=2e-11 Score=105.19 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=57.4
Q ss_pred CCeeEEEeecccccc--CCCccCHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 64 DNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 64 ~~~iIYE~Hv~~~~~--~~~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
++.+|||++++.|.. ....|++++++++ |+|||+||||+|.||||++.+.. .+||++.+|++++++
T Consensus 3 ~~~v~Y~i~~~~f~~~~~~~~G~~~gi~~~-l~yl~~lG~~~i~l~Pi~~~~~~-~~gY~~~d~~~id~~ 70 (543)
T TIGR02403 3 QKKVIYQIYPKSFYDSTGDGTGDLRGIIEK-LDYLKKLGVDYIWLNPFYVSPQK-DNGYDVSDYYAINPL 70 (543)
T ss_pred ccCEEEEEEhHHHhcCCCCCccCHHHHHHh-HHHHHHcCCCEEEECCcccCCCC-CCCCCccccCccCcc
Confidence 577999999999853 3456899999999 99999999999999999997653 469999999998865
No 25
>smart00642 Aamy Alpha-amylase domain.
Probab=99.19 E-value=2.8e-11 Score=90.03 Aligned_cols=51 Identities=16% Similarity=0.295 Sum_probs=46.3
Q ss_pred CCccCHHHHHhhhhHHHHHcCCcEEEeccceecCCC--CCcCCCCCceeeccCC
Q psy14038 80 QKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYY--ASFGYQVTSFFAASSR 131 (131)
Q Consensus 80 ~~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~--~~WGY~~~~~fap~sR 131 (131)
...|++++++++ |+|||+||||+|+|+|++++... .+|||++.+|++++++
T Consensus 13 ~~~G~~~gi~~~-l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~ 65 (166)
T smart00642 13 DGGGDLQGIIEK-LDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPR 65 (166)
T ss_pred CCCcCHHHHHHH-HHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcc
Confidence 346899999999 89999999999999999999875 7899999999999864
No 26
>PRK10785 maltodextrin glucosidase; Provisional
Probab=99.07 E-value=8.6e-10 Score=96.09 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=42.5
Q ss_pred cCHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 83 ASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 83 gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
|+++|++++ |+|||+||||+|.||||++.+ .++||++..|++++++
T Consensus 176 GDl~GI~~k-LdYL~~LGv~~I~L~Pif~s~--s~hgYd~~Dy~~iDp~ 221 (598)
T PRK10785 176 GDLDGISEK-LPYLKKLGVTALYLNPIFTAP--SVHKYDTEDYRHVDPQ 221 (598)
T ss_pred cCHHHHHHH-HHHHHHcCCCEEEeCCcccCC--CCCCcCcccccccCcc
Confidence 799999999 999999999999999999875 4799999999999874
No 27
>PRK09505 malS alpha-amylase; Reviewed
Probab=98.64 E-value=6.5e-08 Score=85.72 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=55.6
Q ss_pred CCCCeeEEEeecccccc-------------CCC-------ccCHHHHHhhhhHHHHHcCCcEEEeccceecC--------
Q psy14038 62 KPDNLKIYESHVGICTQ-------------EQK-------CASYEDFVRVVIPRIVKQGYNAVQLMAIMEHA-------- 113 (131)
Q Consensus 62 ~~~~~iIYE~Hv~~~~~-------------~~~-------~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~-------- 113 (131)
.+++.+||++-+..|.. .+. -|++++++++ |+|||+||||+|.|+||+|..
T Consensus 186 ~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~k-Ldyl~~LGv~aIwlsPi~~~~~~~~~~g~ 264 (683)
T PRK09505 186 DWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEK-LDYLQQLGVNALWISSPLEQIHGWVGGGT 264 (683)
T ss_pred hhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHh-hHHHHHcCCCEEEeCcccccccccccccc
Confidence 46778899999988731 011 2889999999 999999999999999999873
Q ss_pred -----CCCCcCCCCCceeeccCC
Q psy14038 114 -----YYASFGYQVTSFFAASSR 131 (131)
Q Consensus 114 -----~~~~WGY~~~~~fap~sR 131 (131)
...+.||++..|+.++++
T Consensus 265 ~g~~~~~~yhgY~~~D~~~id~~ 287 (683)
T PRK09505 265 KGDFPHYAYHGYYTLDWTKLDAN 287 (683)
T ss_pred ccCCCcCCCCCCCccccccCCCC
Confidence 135679999999988764
No 28
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=98.57 E-value=5.1e-08 Score=82.75 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=39.1
Q ss_pred cCHHHHHhhhhHHHHHcCCcEEEeccceecCC-CCCcCCCCCcee
Q psy14038 83 ASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAY-YASFGYQVTSFF 126 (131)
Q Consensus 83 gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~-~~~WGY~~~~~f 126 (131)
.++.+++++ |+|||+||||+|.|+||++.+. ..++||++..||
T Consensus 19 ~~~~~I~~k-ldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~ 62 (479)
T PRK09441 19 KLWNRLAER-APELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLF 62 (479)
T ss_pred cHHHHHHHH-HHHHHHcCCCEEEeCCCccCCCCCCCCCCCeeccc
Confidence 378899999 9999999999999999999874 467999999999
No 29
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=98.51 E-value=1.2e-07 Score=85.38 Aligned_cols=48 Identities=17% Similarity=0.321 Sum_probs=44.4
Q ss_pred cCHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 83 ASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 83 gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
+||.+++++ ||||++||||||.|+||++.....+|||++++|++++++
T Consensus 13 ~tf~~~~~~-L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~ 60 (825)
T TIGR02401 13 FTFDDAAAL-LPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPE 60 (825)
T ss_pred CCHHHHHHh-hHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCC
Confidence 699999998 999999999999999999987778899999999998764
No 30
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=98.38 E-value=3.8e-07 Score=82.55 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=44.2
Q ss_pred cCHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 83 ASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 83 gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
+||.+++++ ||||++||||||.|+||++.....+|||++..|++++++
T Consensus 17 ~tf~~~~~~-l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~ 64 (879)
T PRK14511 17 FTFDDAAEL-VPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPE 64 (879)
T ss_pred CCHHHHHHH-hHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCC
Confidence 589998888 999999999999999999987778999999999998764
No 31
>PLN02784 alpha-amylase
Probab=98.32 E-value=6.5e-07 Score=80.81 Aligned_cols=65 Identities=18% Similarity=0.197 Sum_probs=51.8
Q ss_pred CCeeEEEeeccccccC-CCcc-CHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 64 DNLKIYESHVGICTQE-QKCA-SYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 64 ~~~iIYE~Hv~~~~~~-~~~g-ty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
.....||+-+..|..+ ...| -|+++.++ ++||++||||+|.|+|+++.. .++||++..||.+++|
T Consensus 497 ~~~~~~eVmlQgF~Wds~~dg~w~~~I~ek-ldyL~~LG~taIWLpP~~~s~--s~~GY~p~D~y~lds~ 563 (894)
T PLN02784 497 GTGSGFEILCQGFNWESHKSGRWYMELGEK-AAELSSLGFTVVWLPPPTESV--SPEGYMPKDLYNLNSR 563 (894)
T ss_pred cccCCceEEEEeEEcCcCCCCchHHHHHHH-HHHHHHhCCCEEEeCCCCCCC--CCCCcCcccccccCcC
Confidence 3456788888887532 1112 37899999 999999999999999998865 5689999999999876
No 32
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=98.31 E-value=1e-06 Score=84.14 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=51.2
Q ss_pred CeeEEEeeccccccCCCccCHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 65 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 65 ~~iIYE~Hv~~~~~~~~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
+..+|-++... -+||.+++++ ||||++||||||.||||++.....++||++++|++++++
T Consensus 743 P~atyrlq~~~------~~tf~~~~~~-l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~ 802 (1693)
T PRK14507 743 PRATYRLQFHK------DFTFADAEAI-LPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPE 802 (1693)
T ss_pred cceeEEEEeCC------CCCHHHHHHH-hHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcc
Confidence 45677777652 3589999998 999999999999999999987778899999999998764
No 33
>PLN02361 alpha-amylase
Probab=98.29 E-value=7.4e-07 Score=74.72 Aligned_cols=45 Identities=16% Similarity=0.313 Sum_probs=40.7
Q ss_pred CHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 84 SYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 84 ty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
-|++++++ |+||++||||+|.|+|+++... +.||++..||.+++|
T Consensus 27 ~w~~i~~k-l~~l~~lG~t~iwl~P~~~~~~--~~GY~~~d~y~~~~~ 71 (401)
T PLN02361 27 WWRNLEGK-VPDLAKSGFTSAWLPPPSQSLA--PEGYLPQNLYSLNSA 71 (401)
T ss_pred HHHHHHHH-HHHHHHcCCCEEEeCCCCcCCC--CCCCCcccccccCcc
Confidence 58999999 9999999999999999998643 589999999999876
No 34
>PLN00196 alpha-amylase; Provisional
Probab=98.13 E-value=3.1e-06 Score=71.52 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=39.8
Q ss_pred ccCHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeecc
Q psy14038 82 CASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAAS 129 (131)
Q Consensus 82 ~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~ 129 (131)
.|.+++++++ |||||+||||+|.|.|+++.. .+-||++..||..+
T Consensus 40 gg~~~~i~~k-ldyL~~LGvtaIWL~P~~~s~--s~hGY~~~D~y~ld 84 (428)
T PLN00196 40 GGWYNFLMGK-VDDIAAAGITHVWLPPPSHSV--SEQGYMPGRLYDLD 84 (428)
T ss_pred CcCHHHHHHH-HHHHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCC
Confidence 4689999999 999999999999999999764 35699999999886
No 35
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=98.01 E-value=8.8e-06 Score=67.85 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=50.4
Q ss_pred eEEEeeccccccC-C------C-ccCHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccC
Q psy14038 67 KIYESHVGICTQE-Q------K-CASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASS 130 (131)
Q Consensus 67 iIYE~Hv~~~~~~-~------~-~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~s 130 (131)
+||++-.+.|... + . .|++.+++++ |+|||+|||++|-|.|+++-+.. .=||++..|...++
T Consensus 2 viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~-LdYl~~LGv~aiwl~Pi~~s~~~-~~gY~~~Dy~~id~ 71 (505)
T COG0366 2 VIYQIYPDRFADSNGSNGPDYDGGGDLKGITEK-LDYLKELGVDAIWLSPIFESPQA-DHGYDVSDYTKVDP 71 (505)
T ss_pred cEEEEechhhcCCCCCCccCCCCcccHHhHHHh-hhHHHHhCCCEEEeCCCCCCCcc-CCCccccchhhcCc
Confidence 6888888887422 1 2 4999999999 99999999999999999998643 34999999887653
No 36
>KOG0471|consensus
Probab=97.82 E-value=1.5e-05 Score=69.21 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=57.2
Q ss_pred CCCeeEEEeecccccc--CCCccCHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 63 PDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 63 ~~~~iIYE~Hv~~~~~--~~~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
++.-+|||+-.++|.. ....|+++|+.++ |+|||+||+|+|=|.|+.+-+.. .-||++.+|+...+|
T Consensus 15 W~~~~~YQI~~~sF~~s~~d~~G~~~GI~~k-ldyi~~lG~taiWisP~~~s~~~-~~GY~~~d~~~l~p~ 83 (545)
T KOG0471|consen 15 WKTESIYQIYPDSFADSDGDGVGDLKGITSK-LDYIKELGFTAIWLSPFTKSSKP-DFGYDASDLEQLRPR 83 (545)
T ss_pred hhcCceeEEeccccccccCCCccccccchhh-hhHHHhcCCceEEeCCCcCCCHH-HhccCccchhhhccc
Confidence 3556799999999853 3345899999999 99999999999999999998766 679999999987765
No 37
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=97.77 E-value=4.1e-05 Score=52.51 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=31.4
Q ss_pred EEeeEEEEEECCEEEEecCcceeeeeeCCCceeeeeceEe
Q psy14038 6 LFYSILFYSVLFYSILRLSPWATYVTEPPVVGHAYEQRIW 45 (131)
Q Consensus 6 ~~y~~l~~~~~g~~~~~~DPyA~~~~~~~~~s~v~~~~~~ 45 (131)
.+|+|+|...+|++.+++||||++++.+++ +...+.++|
T Consensus 61 ~~Yky~i~~~~G~~~~~~DPyA~~~~~~~~-~~~~~~~~~ 99 (99)
T cd02854 61 SKIKVRMVTPSGEWIDRIPAWIKYVTQDKE-TALYDGVFW 99 (99)
T ss_pred CEEEEEEEeCCCCEEEEcCcceeEEEeCCC-CcceeeEEC
Confidence 489999888799999999999999999986 334444443
No 38
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.39 E-value=0.00031 Score=47.56 Aligned_cols=36 Identities=8% Similarity=-0.006 Sum_probs=30.9
Q ss_pred EEeeEEEEEECCEEEEecCcceeeeeeCCCceeeee
Q psy14038 6 LFYSILFYSVLFYSILRLSPWATYVTEPPVVGHAYE 41 (131)
Q Consensus 6 ~~y~~l~~~~~g~~~~~~DPyA~~~~~~~~~s~v~~ 41 (131)
.+|.|.|...++...+++||||+++..+...|++.|
T Consensus 60 ~~Y~y~i~~~~~~~~~~~DPyA~~~~~~~~~s~i~d 95 (100)
T cd02860 60 YYYLYEVKVYKGETNEVVDPYAKALSANGERSVDLD 95 (100)
T ss_pred cEEEEEEEEeceEEEEEcCcccEeEeeCCCceEECC
Confidence 579999876668888999999999999998777765
No 39
>PRK13840 sucrose phosphorylase; Provisional
Probab=97.19 E-value=0.00039 Score=59.97 Aligned_cols=47 Identities=11% Similarity=0.227 Sum_probs=39.8
Q ss_pred cCHHHHHhhhhH-HHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 83 ASYEDFVRVVIP-RIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 83 gty~~~~~~~l~-ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
|+++++.++ |+ ||++| |+.|.|||+++-.....-||+++.|+.+++|
T Consensus 17 GdL~gl~~k-Ld~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VDP~ 64 (495)
T PRK13840 17 GGLKSLTAL-LDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVDPR 64 (495)
T ss_pred CCHhHHHHH-HHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcCcc
Confidence 799999999 89 59999 9999999998542224459999999998875
No 40
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=96.39 E-value=0.0034 Score=53.93 Aligned_cols=46 Identities=7% Similarity=0.153 Sum_probs=38.1
Q ss_pred CCccCHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 80 QKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 80 ~~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
+..|++.++.++ ||++ ||++|.|||++..+. .=||+++.|+.+++|
T Consensus 14 ~glgdl~g~l~~---yL~~-~v~~i~LlPffps~s--D~GYdv~DY~~VDP~ 59 (470)
T TIGR03852 14 KNLKELNKVLEN---YFKD-AVGGVHLLPFFPSTG--DRGFAPMDYTEVDPA 59 (470)
T ss_pred CChhhHHHHHHH---HHHH-hCCEEEECCCCcCCC--CCCcCchhhceeCcc
Confidence 345677777766 9999 899999999998774 459999999998875
No 41
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=96.12 E-value=0.0061 Score=58.11 Aligned_cols=46 Identities=13% Similarity=0.219 Sum_probs=36.0
Q ss_pred ccCHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeecc
Q psy14038 82 CASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAAS 129 (131)
Q Consensus 82 ~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~ 129 (131)
-|+|.+..++ |++||+||||.|.||||++-...+| -|+...|+..+
T Consensus 128 mG~~~~w~~~-L~~ik~lGyN~IhftPI~~~G~SnS-~Ysi~Dyl~id 173 (1464)
T TIGR01531 128 LGPLSEWEPR-LRVAKEKGYNMIHFTPLQELGGSNS-CYSLYDQLQLN 173 (1464)
T ss_pred cCCHHHHHHH-HHHHHHcCCCEEEeCCCccCCCCCC-CccccchhhcC
Confidence 3789776666 9999999999999999997654444 67777666544
No 42
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=96.06 E-value=0.0099 Score=52.95 Aligned_cols=45 Identities=31% Similarity=0.523 Sum_probs=31.9
Q ss_pred CCCeeEEEeeccccccCCCccCHHHHHh---hhhHHH-----------HHcCCcEEEeccce
Q psy14038 63 PDNLKIYESHVGICTQEQKCASYEDFVR---VVIPRI-----------VKQGYNAVQLMAIM 110 (131)
Q Consensus 63 ~~~~iIYE~Hv~~~~~~~~~gty~~~~~---~~l~yl-----------k~LGvt~VeLmPv~ 110 (131)
+.+.+|.++||++.+++| |+.++++ ++-..| -=.||.+||||||-
T Consensus 176 ~~P~nILQiHv~TAsp~G---tlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiE 234 (811)
T PF14872_consen 176 PAPRNILQIHVGTASPEG---TLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIE 234 (811)
T ss_pred CCCceeEEEecCCCCCCc---chHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccC
Confidence 578899999999998874 6666543 111111 12699999999996
No 43
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=95.45 E-value=0.021 Score=38.22 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=25.6
Q ss_pred EeeEEEEEECCEEEEecCcceeeeeeCCC-ceee
Q psy14038 7 FYSILFYSVLFYSILRLSPWATYVTEPPV-VGHA 39 (131)
Q Consensus 7 ~y~~l~~~~~g~~~~~~DPyA~~~~~~~~-~s~v 39 (131)
+|+|.+..-+|....+.||||+.+.++++ +|++
T Consensus 72 ~Y~~~v~~~~g~~~~~~DPYa~~~~~~~~~~~~~ 105 (106)
T cd02855 72 LYKYEILGADGHLPLKADPYAFYSELRPGTASIV 105 (106)
T ss_pred EEEEEEECCCCCEEEeeCCCceeeEeCCCCeEEe
Confidence 58888655345778899999999999876 5654
No 44
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=94.84 E-value=0.047 Score=48.77 Aligned_cols=63 Identities=10% Similarity=0.114 Sum_probs=42.5
Q ss_pred eEEEeeccccccCCCccCHHHHHh-hhhHHHHHcCCcEEEeccceec---------CCCCCcCCCCCceeeccCC
Q psy14038 67 KIYESHVGICTQEQKCASYEDFVR-VVIPRIVKQGYNAVQLMAIMEH---------AYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 67 iIYE~Hv~~~~~~~~~gty~~~~~-~~l~ylk~LGvt~VeLmPv~e~---------~~~~~WGY~~~~~fap~sR 131 (131)
+=..++..+.-.++...-+..+++ .+-+||++|||++|-|+|+++. +.. ..||+.+. |+++++
T Consensus 53 ~W~~~~P~s~i~~~~~s~~~~L~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~-D~gyDi~d-~~Idp~ 125 (688)
T TIGR02455 53 VWFTAYPAAIIAPEGCSVLEALADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSI-DGNFDRIS-FDIDPL 125 (688)
T ss_pred eeEEecchhhcCCCCCcHHHHhcChHHHHHHHHhCCCEEEeCcceecccccccCCCCCC-CCCCCccc-CccCcc
Confidence 344555555432333334455554 5799999999999999999998 543 34999998 476653
No 45
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=94.12 E-value=0.026 Score=36.98 Aligned_cols=32 Identities=9% Similarity=-0.025 Sum_probs=22.5
Q ss_pred EEeeEEEEEECCEEEEecCcceeeeeeCCC-ceeeee
Q psy14038 6 LFYSILFYSVLFYSILRLSPWATYVTEPPV-VGHAYE 41 (131)
Q Consensus 6 ~~y~~l~~~~~g~~~~~~DPyA~~~~~~~~-~s~v~~ 41 (131)
.+|.|.|. + ...++||||++.....+ +|++.+
T Consensus 52 ~~Y~y~v~--~--~~~~~DP~a~~~~~~~~~~s~v~~ 84 (85)
T cd02853 52 TRYRYRLD--D--GTPVPDPASRFQPEGVHGPSQVVD 84 (85)
T ss_pred CeEEEEEC--C--CcCCCCCccccCCCCCCCCeEeeC
Confidence 46888865 2 35799999999765554 677654
No 46
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=93.83 E-value=0.032 Score=38.74 Aligned_cols=30 Identities=17% Similarity=0.062 Sum_probs=21.7
Q ss_pred EEeeEEEEE----ECCEEEE----ecCcceeeeeeCCC
Q psy14038 6 LFYSILFYS----VLFYSIL----RLSPWATYVTEPPV 35 (131)
Q Consensus 6 ~~y~~l~~~----~~g~~~~----~~DPyA~~~~~~~~ 35 (131)
.+|.|.|.- .+|.... ++||||+++..+..
T Consensus 62 ~~Y~y~v~g~~~p~~g~~~~~~~~~~DPYA~a~~~~~~ 99 (119)
T cd02852 62 QLYGYRVDGPFEPEQGHRFDPSKVLLDPYAKAVSGDEY 99 (119)
T ss_pred CEEEEEECCCCCCCcccccCCCcEEECCCcCeEcCccc
Confidence 478888663 3455544 99999999987664
No 47
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=92.84 E-value=0.074 Score=36.04 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=20.6
Q ss_pred EEeeEEEEEE--------CCEEEEecCcceeeeeeCCC
Q psy14038 6 LFYSILFYSV--------LFYSILRLSPWATYVTEPPV 35 (131)
Q Consensus 6 ~~y~~l~~~~--------~g~~~~~~DPyA~~~~~~~~ 35 (131)
.+|.|.|-.. .+...+++||||++++.+..
T Consensus 58 ~~Y~y~i~g~~~p~~~~~~~~~~~~~DPYA~~~~~~~~ 95 (103)
T cd02856 58 QRYGFRVHGPYDPERGLRFNPAKLLLDPYARALDGPLA 95 (103)
T ss_pred CEEEEEECCccCcccCcccCCCeEEecCCcceEcCCcc
Confidence 3677776430 23347899999999987653
No 48
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=90.29 E-value=0.27 Score=44.71 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=35.6
Q ss_pred CHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCcee
Q psy14038 84 SYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFF 126 (131)
Q Consensus 84 ty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~f 126 (131)
||...... ||||++|||.|+=+=||+--.....=|||++..-
T Consensus 17 tF~~A~~~-l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t 58 (889)
T COG3280 17 TFADARAL-LDYLADLGISHLYLSPIFTARPGSTHGYDVVDPT 58 (889)
T ss_pred CHHHHHHh-hHHHHhcCchheeccchhhcCCCCCCCccCCCcc
Confidence 77775555 9999999999999999998777777899998654
No 49
>PLN02635 disproportionating enzyme
Probab=86.94 E-value=1.5 Score=38.59 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=32.7
Q ss_pred eeccccccCCCccCHHHHHhhhhHHHHHcCCcEEEeccceec
Q psy14038 71 SHVGICTQEQKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEH 112 (131)
Q Consensus 71 ~Hv~~~~~~~~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~ 112 (131)
+|+-+.-..-..|+|...+.+.++.+++.|.+.+|++|+...
T Consensus 34 l~l~SLps~~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt 75 (538)
T PLN02635 34 LHPTSLPGPYGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPP 75 (538)
T ss_pred EccccCCCCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 455443223446899888888899999999999999999654
No 50
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=85.04 E-value=1.3 Score=37.84 Aligned_cols=33 Identities=18% Similarity=0.448 Sum_probs=27.8
Q ss_pred cCHHHHHhhhhHHHHHcCCcEEEeccceecCCCC
Q psy14038 83 ASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYA 116 (131)
Q Consensus 83 gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~ 116 (131)
|.|.+..+. |+.++++|||.|.|-|+|+.-..+
T Consensus 19 G~~~~W~~~-l~~~~~~GYNmIHftPlq~~G~S~ 51 (423)
T PF14701_consen 19 GPFSDWEKH-LKVISEKGYNMIHFTPLQERGESN 51 (423)
T ss_pred CCHhHHHHH-HHHHHHcCCcEEEecccccCCCCC
Confidence 678777777 999999999999999999975433
No 51
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=80.64 E-value=2.1 Score=37.02 Aligned_cols=47 Identities=21% Similarity=0.164 Sum_probs=26.8
Q ss_pred CccCHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceee
Q psy14038 81 KCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFA 127 (131)
Q Consensus 81 ~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fa 127 (131)
..|.|-.-+..+++.+++.|+.-+||+|+.......+|=|+|.+=||
T Consensus 13 GIGDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~a 59 (496)
T PF02446_consen 13 GIGDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFA 59 (496)
T ss_dssp SS--SSHHHHHHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS
T ss_pred ceecHHHHHHHHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCc
Confidence 46888333555699999999999999999988777777677665444
No 52
>PRK05402 glycogen branching enzyme; Provisional
Probab=79.38 E-value=1.5 Score=39.59 Aligned_cols=23 Identities=13% Similarity=-0.222 Sum_probs=20.9
Q ss_pred EeeEEEEEECCEEEEecCcceeee
Q psy14038 7 FYSILFYSVLFYSILRLSPWATYV 30 (131)
Q Consensus 7 ~y~~l~~~~~g~~~~~~DPyA~~~ 30 (131)
.|||.|.+ +|+++++.||||+..
T Consensus 76 ~YKy~i~~-~g~~~~k~DPyaf~~ 98 (726)
T PRK05402 76 DYRLRVTW-GGGEQLIDDPYRFGP 98 (726)
T ss_pred CeEEEEEe-CCceeEeccccccCC
Confidence 59999999 999999999999953
No 53
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=78.22 E-value=5.3 Score=34.69 Aligned_cols=33 Identities=9% Similarity=0.078 Sum_probs=26.7
Q ss_pred CccCHHHHHhhhhHHHHHcCCcEEEeccceecC
Q psy14038 81 KCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHA 113 (131)
Q Consensus 81 ~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~ 113 (131)
..|+|..-+.++++.+++.|.+.||++|+....
T Consensus 21 GiGDfg~dl~~~id~~~~~G~~~~qilPl~~~~ 53 (497)
T PRK14508 21 GIGDFGKGAYEFIDFLAEAGQSYWQILPLGPTG 53 (497)
T ss_pred CCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 468896334456999999999999999999854
No 54
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=76.88 E-value=5.6 Score=36.35 Aligned_cols=32 Identities=16% Similarity=0.391 Sum_probs=28.0
Q ss_pred CccCHHHHHhhhhHHHHHcCCcEEEeccceecC
Q psy14038 81 KCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHA 113 (131)
Q Consensus 81 ~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~ 113 (131)
..|+|.. +.++++.+++.|...+||+||....
T Consensus 78 GIGDfgd-L~~fvD~~a~~G~~~~QiLPL~~t~ 109 (745)
T PLN03236 78 GAGDFGD-LEALVDFAAEAGMSVVQLLPVNDTC 109 (745)
T ss_pred CcccHHH-HHHHHHHHHHcCCCEEEECCCCcCC
Confidence 4689988 6677999999999999999999854
No 55
>PLN02950 4-alpha-glucanotransferase
Probab=74.43 E-value=7.1 Score=36.46 Aligned_cols=32 Identities=22% Similarity=0.479 Sum_probs=26.8
Q ss_pred CccCHHHHHhhhhHHHHHcCCcEEEeccceecC
Q psy14038 81 KCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHA 113 (131)
Q Consensus 81 ~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~ 113 (131)
..|.|.++ .++++.+++.|...|||+|+....
T Consensus 278 GIGDf~dl-~~~id~~a~~G~~~~QilPl~~t~ 309 (909)
T PLN02950 278 GVGEFLDL-KLLVDWAVKSGLHLVQLLPVNDTS 309 (909)
T ss_pred CeeCHHHH-HHHHHHHHHcCCCEEEECCCCCCC
Confidence 46899654 556999999999999999998754
No 56
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=71.12 E-value=8.7 Score=36.97 Aligned_cols=48 Identities=13% Similarity=0.119 Sum_probs=33.2
Q ss_pred CCccCHHHHHhhhhHHHHHcCCcEEEeccceecCCCCCcCCCCCceeeccCC
Q psy14038 80 QKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131 (131)
Q Consensus 80 ~~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~~~WGY~~~~~fap~sR 131 (131)
-..|.|.++ .++++.+++.|...+||+|+..-....-+. .+.|+|.||
T Consensus 740 ~GiGDf~dl-~~~vd~~a~~G~~~~qilPl~~~~~~~p~~---~SPYsp~S~ 787 (1221)
T PRK14510 740 WGIGDFEEL-YALVDFLAEGGQSLWGVNPLHPLGLGDPER---ASPYQPSSR 787 (1221)
T ss_pred CCccCHHHH-HHHHHHHHHcCCCEEEECCCCCCCCCCCCC---CCCccchhc
Confidence 346899554 446999999999999999999854332222 244555554
No 57
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=70.87 E-value=3.9 Score=32.37 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.7
Q ss_pred HhhhhHHHHHcCCcEEEecccee
Q psy14038 89 VRVVIPRIVKQGYNAVQLMAIME 111 (131)
Q Consensus 89 ~~~~l~ylk~LGvt~VeLmPv~e 111 (131)
.+.+|.||++.|++-|.|||.|-
T Consensus 181 ~d~vi~~l~~~~~~~v~L~PlMl 203 (265)
T COG4822 181 VDTVIEYLRKNGIKEVHLIPLML 203 (265)
T ss_pred HHHHHHHHHHcCCceEEEeeeEE
Confidence 45689999999999999999994
No 58
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=65.46 E-value=11 Score=24.41 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=17.3
Q ss_pred EeeEEEEEECCEEEEecCcceeeeeeC
Q psy14038 7 FYSILFYSVLFYSILRLSPWATYVTEP 33 (131)
Q Consensus 7 ~y~~l~~~~~g~~~~~~DPyA~~~~~~ 33 (131)
+|.|. +.++| ....||+++....+
T Consensus 53 ~Y~Y~-~~vdg--~~~~DP~s~~~~~~ 76 (85)
T cd02858 53 IYTYS-FLVDG--VRVIDPSNPTTKPG 76 (85)
T ss_pred EEEEE-EEECC--eEecCCCCCceeec
Confidence 56777 66788 56789998886643
No 59
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=61.92 E-value=6.3 Score=31.46 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=18.8
Q ss_pred hhhhHHHHHcCCcEEEecccee
Q psy14038 90 RVVIPRIVKQGYNAVQLMAIME 111 (131)
Q Consensus 90 ~~~l~ylk~LGvt~VeLmPv~e 111 (131)
+.+|+.||+.|+..|.|+|.|-
T Consensus 186 ~~vi~~L~~~g~k~V~L~PlMl 207 (262)
T PF06180_consen 186 EDVIARLKKKGIKKVHLIPLML 207 (262)
T ss_dssp HHHHHHHHHHT-SEEEEEEESS
T ss_pred HHHHHHHHhcCCCeEEEEeccc
Confidence 4579999999999999999994
No 60
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=61.26 E-value=7.4 Score=30.87 Aligned_cols=25 Identities=8% Similarity=0.264 Sum_probs=17.8
Q ss_pred cCHHHHH------hhhhHHHHHcCCcEEEec
Q psy14038 83 ASYEDFV------RVVIPRIVKQGYNAVQLM 107 (131)
Q Consensus 83 gty~~~~------~~~l~ylk~LGvt~VeLm 107 (131)
||+.+++ ++-+.++|+||+++||+.
T Consensus 74 Gtl~E~a~~q~~~~~yl~~~k~lGf~~IEiS 104 (244)
T PF02679_consen 74 GTLFEVAYQQGKFDEYLEECKELGFDAIEIS 104 (244)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE-
T ss_pred cHHHHHHHhcChHHHHHHHHHHcCCCEEEec
Confidence 4565543 457999999999999974
No 61
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=59.18 E-value=9.8 Score=25.88 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=19.4
Q ss_pred hhhhHHHHHcCCcEEEeccceec
Q psy14038 90 RVVIPRIVKQGYNAVQLMAIMEH 112 (131)
Q Consensus 90 ~~~l~ylk~LGvt~VeLmPv~e~ 112 (131)
+.++..+++.|++.|.|+|++=.
T Consensus 45 ~~~l~~l~~~G~~~i~lvPl~L~ 67 (103)
T cd03413 45 DDVLAKLKKAGIKKVTLMPLMLV 67 (103)
T ss_pred HHHHHHHHHcCCCEEEEEehhhe
Confidence 44577889999999999999954
No 62
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=58.05 E-value=20 Score=31.28 Aligned_cols=34 Identities=12% Similarity=-0.037 Sum_probs=30.2
Q ss_pred CCccCHHHHHhhhhHHHHHcCCcEEEeccceecC
Q psy14038 80 QKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHA 113 (131)
Q Consensus 80 ~~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~ 113 (131)
-..|+|..++...++.+++.|..-.||+|+....
T Consensus 29 ~GIGDfg~la~~~~d~~~~~g~~~wqllpl~p~~ 62 (513)
T TIGR00217 29 WGIGDLGDGAYKFIDFLKAGSQSVWQIHALYPAD 62 (513)
T ss_pred CCccChHHHHHHHHHHHHHcCCcEEEeCCCCCCC
Confidence 4578999999999999999999999999998753
No 63
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=56.01 E-value=10 Score=24.43 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=19.1
Q ss_pred hhHHHHHcCCcEEEeccceec
Q psy14038 92 VIPRIVKQGYNAVQLMAIMEH 112 (131)
Q Consensus 92 ~l~ylk~LGvt~VeLmPv~e~ 112 (131)
.++.+|++|+.+|.-||+...
T Consensus 29 ~~~~~~~~G~~~V~yLPLAa~ 49 (79)
T PF12996_consen 29 FVEEYRNLGAENVFYLPLAAN 49 (79)
T ss_pred HHHHHHHcCCCCEEEccccCC
Confidence 589999999999999999864
No 64
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=53.12 E-value=15 Score=23.79 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=19.7
Q ss_pred hhhhHHHHHcCCcEEEeccceec
Q psy14038 90 RVVIPRIVKQGYNAVQLMAIMEH 112 (131)
Q Consensus 90 ~~~l~ylk~LGvt~VeLmPv~e~ 112 (131)
++.+..|++.|++.|-++|++=+
T Consensus 48 ~~~l~~l~~~g~~~vvvvPl~~~ 70 (101)
T cd03409 48 EEAIRELAEEGYQRVVIVPLAPV 70 (101)
T ss_pred HHHHHHHHHcCCCeEEEEeCccc
Confidence 34588899999999999999866
No 65
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=52.81 E-value=13 Score=29.34 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=19.8
Q ss_pred HhhhhHHHHHcCCcEEEeccce
Q psy14038 89 VRVVIPRIVKQGYNAVQLMAIM 110 (131)
Q Consensus 89 ~~~~l~ylk~LGvt~VeLmPv~ 110 (131)
.++.+..||+||.++|.+||+-
T Consensus 137 vetAiaml~dmG~~SiKffPM~ 158 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMG 158 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecC
Confidence 4567999999999999999987
No 66
>TIGR03565 alk_sulf_monoox alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes.
Probab=51.51 E-value=17 Score=29.61 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=23.2
Q ss_pred CccCHHHHHhhhhHHHHHcCCcEEEecc
Q psy14038 81 KCASYEDFVRVVIPRIVKQGYNAVQLMA 108 (131)
Q Consensus 81 ~~gty~~~~~~~l~ylk~LGvt~VeLmP 108 (131)
-.||+.+++++ |..++++|++++-|-+
T Consensus 302 lVGtpe~Va~~-l~~~~~~Gv~~~~L~~ 328 (346)
T TIGR03565 302 LVGDPETVAAR-IREYQDLGIDTFILSG 328 (346)
T ss_pred eeCCHHHHHHH-HHHHHHcCCcEEEecC
Confidence 56999999999 6777799999998874
No 67
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=51.39 E-value=14 Score=28.83 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=14.8
Q ss_pred HhhhhHHHHHcCCcEEEeccce
Q psy14038 89 VRVVIPRIVKQGYNAVQLMAIM 110 (131)
Q Consensus 89 ~~~~l~ylk~LGvt~VeLmPv~ 110 (131)
.++.+..||+||.++|.++|+-
T Consensus 137 vetAiaml~dmG~~SiKffPm~ 158 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFFPMG 158 (218)
T ss_dssp HHHHHHHHHHTT--EEEE---T
T ss_pred HHHHHHHHHHcCCCeeeEeecC
Confidence 3567999999999999999986
No 68
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=49.84 E-value=7.8 Score=31.46 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=19.3
Q ss_pred HhhhhHHHHHcCCcEEEecccee
Q psy14038 89 VRVVIPRIVKQGYNAVQLMAIME 111 (131)
Q Consensus 89 ~~~~l~ylk~LGvt~VeLmPv~e 111 (131)
...++||||++||+.|+.|=+..
T Consensus 76 ~~~iip~Lk~~GV~~iD~lIlTH 98 (293)
T COG2333 76 QDVIIPYLKSLGVRKLDQLILTH 98 (293)
T ss_pred ceeehhhHhHcCCccccEEEecc
Confidence 34689999999999999886653
No 69
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=49.29 E-value=18 Score=28.63 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=18.5
Q ss_pred cCHHHHH------hhhhHHHHHcCCcEEEec
Q psy14038 83 ASYEDFV------RVVIPRIVKQGYNAVQLM 107 (131)
Q Consensus 83 gty~~~~------~~~l~ylk~LGvt~VeLm 107 (131)
||+.+.+ ++-+.++|+||+++||+.
T Consensus 61 Gtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS 91 (237)
T TIGR03849 61 GTLFEIAHSKGKFDEYLNECDELGFEAVEIS 91 (237)
T ss_pred ccHHHHHHHhhhHHHHHHHHHHcCCCEEEEc
Confidence 4665543 335669999999999984
No 70
>PF11752 DUF3309: Protein of unknown function (DUF3309); InterPro: IPR021738 This family is conserved in bacteria but its function is not known.
Probab=48.75 E-value=11 Score=22.69 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=10.7
Q ss_pred ecCCCCCcCCCCCc
Q psy14038 111 EHAYYASFGYQVTS 124 (131)
Q Consensus 111 e~~~~~~WGY~~~~ 124 (131)
-++...+|||.|++
T Consensus 18 ~wp~sr~wGy~PsG 31 (49)
T PF11752_consen 18 TWPYSRGWGYGPSG 31 (49)
T ss_pred CCCCCCCCCcCCcc
Confidence 35667899998875
No 71
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=48.60 E-value=29 Score=31.53 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=26.8
Q ss_pred CCccCHHHHHhhhhHHHHHcCCcEEEecccee
Q psy14038 80 QKCASYEDFVRVVIPRIVKQGYNAVQLMAIME 111 (131)
Q Consensus 80 ~~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e 111 (131)
-..|.|.. +.++++.+++.|..-++|.|++.
T Consensus 159 ~GIGDfgd-l~~l~d~~a~~G~~~~qlnPlha 189 (695)
T PRK11052 159 WGIGDFGD-LKQMLEDVAKRGGDFIGLNPIHA 189 (695)
T ss_pred CCeecHHH-HHHHHHHHHHcCCCEEEECCCCc
Confidence 34689988 55679999999999999999996
No 72
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=48.24 E-value=50 Score=26.44 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=28.7
Q ss_pred CCeeEEEeeccc-cccCCCccCHHHHHhhhhHHHHHcCCcEEEe
Q psy14038 64 DNLKIYESHVGI-CTQEQKCASYEDFVRVVIPRIVKQGYNAVQL 106 (131)
Q Consensus 64 ~~~iIYE~Hv~~-~~~~~~~gty~~~~~~~l~ylk~LGvt~VeL 106 (131)
..+.|.|+-+|+ .+..+..-+-.+ ..+++..|.++||.+||.
T Consensus 3 ~~v~I~D~TlRDG~Q~~~~~~s~e~-k~~ia~~L~~~Gv~~IEv 45 (287)
T PRK05692 3 KRVKIVEVGPRDGLQNEKRFIPTAD-KIALIDRLSAAGLSYIEV 45 (287)
T ss_pred CceEEEECCCCccccCcCCCcCHHH-HHHHHHHHHHcCCCEEEe
Confidence 357889999987 333333333333 234688999999999998
No 73
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=48.23 E-value=5.1 Score=26.82 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=24.3
Q ss_pred CCccCHHHHHhhhhHHHHHcCCcEEEecc
Q psy14038 80 QKCASYEDFVRVVIPRIVKQGYNAVQLMA 108 (131)
Q Consensus 80 ~~~gty~~~~~~~l~ylk~LGvt~VeLmP 108 (131)
.+.|-...+.+++++++++.|+..+-|.|
T Consensus 85 R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~ 113 (127)
T PF13527_consen 85 RGRGLGRQLMRALLERARERGVPFIFLFP 113 (127)
T ss_dssp TTSSHHHHHHHHHHHHHHHTT-SEEEEE-
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 34678899999999999999999999999
No 74
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=47.88 E-value=16 Score=30.52 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=18.9
Q ss_pred hhHHHHHcCCcEEEeccceec
Q psy14038 92 VIPRIVKQGYNAVQLMAIMEH 112 (131)
Q Consensus 92 ~l~ylk~LGvt~VeLmPv~e~ 112 (131)
++.+++++|++.++++|+.+.
T Consensus 186 ~~~~~~~lg~~~~~~~p~~~~ 206 (412)
T PRK13745 186 FYHFFKELDCHYIQFAPIVER 206 (412)
T ss_pred HHHHHHHcCCCeEEEEeccCc
Confidence 588999999999999999873
No 75
>TIGR03612 RutA pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase.
Probab=47.57 E-value=19 Score=29.52 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=25.0
Q ss_pred CccCHHHHHhhhhHHHHHcCCcEEEecc
Q psy14038 81 KCASYEDFVRVVIPRIVKQGYNAVQLMA 108 (131)
Q Consensus 81 ~~gty~~~~~~~l~ylk~LGvt~VeLmP 108 (131)
-.||..++++++..+.+++|++++-|++
T Consensus 304 lvGtPe~Vae~l~~~~~~~G~d~f~l~~ 331 (355)
T TIGR03612 304 LVGSYETVARMLDEVAEVPGTGGVLLTF 331 (355)
T ss_pred EEECHHHHHHHHHHHHhccCCCeeEEcC
Confidence 4689999999988899889999999997
No 76
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=45.29 E-value=15 Score=30.31 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=15.3
Q ss_pred HHhhhhHHHHHcCCcEEEeccce
Q psy14038 88 FVRVVIPRIVKQGYNAVQLMAIM 110 (131)
Q Consensus 88 ~~~~~l~ylk~LGvt~VeLmPv~ 110 (131)
...+=|+++|+||+|+|-+--|-
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY~vd 76 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVYSVD 76 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES---
T ss_pred HHHHhHHHHHHcCCCEEEEEEeC
Confidence 33445999999999999876554
No 77
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=44.76 E-value=21 Score=17.43 Aligned_cols=11 Identities=9% Similarity=0.335 Sum_probs=9.4
Q ss_pred hhHHHHHcCCc
Q psy14038 92 VIPRIVKQGYN 102 (131)
Q Consensus 92 ~l~ylk~LGvt 102 (131)
.+++|+++|++
T Consensus 21 ~~~~l~~~g~~ 31 (31)
T smart00733 21 KVEFLKELGFS 31 (31)
T ss_pred HHHHHHHcCCC
Confidence 49999999985
No 78
>PRK00719 alkanesulfonate monooxygenase; Provisional
Probab=43.93 E-value=28 Score=28.83 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=22.8
Q ss_pred CccCHHHHHhhhhHHHHHcCCcEEEecc
Q psy14038 81 KCASYEDFVRVVIPRIVKQGYNAVQLMA 108 (131)
Q Consensus 81 ~~gty~~~~~~~l~ylk~LGvt~VeLmP 108 (131)
-.||+.+++++ |..+.++|++++-|.+
T Consensus 303 lvGspe~Vae~-l~~~~~~Gvd~fil~~ 329 (378)
T PRK00719 303 LVGDPPTVAAR-IKEYAALGIDTFILSG 329 (378)
T ss_pred eecCHHHHHHH-HHHHHHcCCCEEEEcC
Confidence 46999999999 5677799999988854
No 79
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=42.38 E-value=30 Score=28.30 Aligned_cols=31 Identities=29% Similarity=0.245 Sum_probs=24.2
Q ss_pred HHHHHhhhhHHHHHcCCcEEEeccceecCCC
Q psy14038 85 YEDFVRVVIPRIVKQGYNAVQLMAIMEHAYY 115 (131)
Q Consensus 85 y~~~~~~~l~ylk~LGvt~VeLmPv~e~~~~ 115 (131)
+..=.+++|.+|++||+|+|=|-+..+-..+
T Consensus 15 ~~~nl~~l~~ri~~~~~~tV~Lqaf~d~~gd 45 (294)
T PF14883_consen 15 QERNLDKLIQRIKDMGINTVYLQAFADPDGD 45 (294)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeeeCCCCC
Confidence 4444567899999999999999988865443
No 80
>TIGR03841 F420_Rv3093c probable F420-dependent oxidoreductase, Rv3093c family. This model describes a small family of enzymes in the bacterial luciferase-like monooxygenase family, which includes F420-dependent enzymes such as N5,N10-methylenetetrahydromethanopterin reductase as well as FMN-dependent enzymes. All members of this family are from species that produce coenzyme F420; SIMBAL analysis suggests that members of this family bind F420 rather than FMN.
Probab=39.39 E-value=36 Score=27.05 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=22.1
Q ss_pred ccCHHHHHhhhhHHHHHcCCcEEEeccc
Q psy14038 82 CASYEDFVRVVIPRIVKQGYNAVQLMAI 109 (131)
Q Consensus 82 ~gty~~~~~~~l~ylk~LGvt~VeLmPv 109 (131)
.||=.+++++ |...+++|++++-|.|+
T Consensus 274 ~Gtpe~v~~~-l~~~~~aGvd~~~l~~~ 300 (301)
T TIGR03841 274 HGDAAQVRAR-LEAYVDAGVDTVVLVPE 300 (301)
T ss_pred cCCHHHHHHH-HHHHHhCCCCeEEEEeC
Confidence 4666777777 77889999999999984
No 81
>TIGR03858 LLM_2I7G probable oxidoreductase, LLM family. This model describes a highly conserved, somewhat broadly distributed family withing the luciferase-like monooxygenase (LLM) superfamily. Most members are from species incapable of synthesizing coenzyme F420, bound by some members of the LLM superfamily. Members, therefore, are more likely to use FMN as a cofactor.
Probab=39.25 E-value=35 Score=27.63 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=24.7
Q ss_pred CccCHHHHHhhhhHHHHHcCCcEEEeccc
Q psy14038 81 KCASYEDFVRVVIPRIVKQGYNAVQLMAI 109 (131)
Q Consensus 81 ~~gty~~~~~~~l~ylk~LGvt~VeLmPv 109 (131)
-.||-.++++++..+..++|++++.|++.
T Consensus 284 lvGtPe~V~e~i~~~~~~~G~d~~~l~~~ 312 (337)
T TIGR03858 284 YVGSPETVAEKIADTIETLGLDRFMLHYS 312 (337)
T ss_pred eeeCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 36899999999777888899999999874
No 82
>PRK02271 methylenetetrahydromethanopterin reductase; Provisional
Probab=38.74 E-value=40 Score=27.10 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=22.3
Q ss_pred ccCHHHHHhhhhHHHHHcCCcEEEe-ccce
Q psy14038 82 CASYEDFVRVVIPRIVKQGYNAVQL-MAIM 110 (131)
Q Consensus 82 ~gty~~~~~~~l~ylk~LGvt~VeL-mPv~ 110 (131)
.||-.+++++ |..++++|+++|.| .|+-
T Consensus 282 ~Gtpe~v~~~-l~~~~~aGvd~v~l~~~~~ 310 (325)
T PRK02271 282 AGTPEDVVEK-IEALLEMGVTQIVAGSPIG 310 (325)
T ss_pred cCCHHHHHHH-HHHHHHcCCCEEEecCCCC
Confidence 4788888888 66788999999999 4543
No 83
>PRK01060 endonuclease IV; Provisional
Probab=38.22 E-value=31 Score=26.71 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=16.7
Q ss_pred hhhhHHHHHcCCcEEEeccc
Q psy14038 90 RVVIPRIVKQGYNAVQLMAI 109 (131)
Q Consensus 90 ~~~l~ylk~LGvt~VeLmPv 109 (131)
++.+..++++|+.+|||.+-
T Consensus 15 ~~~l~~~~~~G~d~vEl~~~ 34 (281)
T PRK01060 15 EGAVAEAAEIGANAFMIFTG 34 (281)
T ss_pred HHHHHHHHHcCCCEEEEECC
Confidence 34599999999999999753
No 84
>TIGR03558 oxido_grp_1 luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296.
Probab=37.78 E-value=39 Score=27.02 Aligned_cols=28 Identities=11% Similarity=0.050 Sum_probs=23.2
Q ss_pred ccCHHHHHhhhhHHHHHcCCcEEEeccc
Q psy14038 82 CASYEDFVRVVIPRIVKQGYNAVQLMAI 109 (131)
Q Consensus 82 ~gty~~~~~~~l~ylk~LGvt~VeLmPv 109 (131)
.||=.++++++..+++++|++++.|+|.
T Consensus 279 iGspe~v~~~l~~~~~~~G~d~~~~~~~ 306 (323)
T TIGR03558 279 VGSPETVREQLEALAERTGADELMVTTP 306 (323)
T ss_pred EcCHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 4777888889666788899999999885
No 85
>TIGR03854 F420_MSMEG_3544 probable F420-dependent oxidoreductase, MSMEG_3544 family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a small family, closely related to other such families in the putative F420-binding region, exemplified by MSMEG_3544 in Mycobacterium smegmatis.
Probab=35.15 E-value=47 Score=26.44 Aligned_cols=28 Identities=11% Similarity=0.199 Sum_probs=23.0
Q ss_pred CccCHHHHHhhhhHHHHHcCCcEEEeccc
Q psy14038 81 KCASYEDFVRVVIPRIVKQGYNAVQLMAI 109 (131)
Q Consensus 81 ~~gty~~~~~~~l~ylk~LGvt~VeLmPv 109 (131)
..||..++++. |..+.++|+++|.|-|.
T Consensus 242 ~~g~~~~v~~~-l~~~~~aG~~~~~l~~~ 269 (290)
T TIGR03854 242 IAVGWAQLHRR-IDAYLDAGLTKFVIRPA 269 (290)
T ss_pred cCCCHHHHHHH-HHHHHHcCCcEEEEcCC
Confidence 35777888888 88888999999999763
No 86
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=34.43 E-value=1e+02 Score=25.60 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=31.7
Q ss_pred CCCCeeEEEeeccc-cccCCCccCHHHHHhhhhHHHHHcCCcEEEecc
Q psy14038 62 KPDNLKIYESHVGI-CTQEQKCASYEDFVRVVIPRIVKQGYNAVQLMA 108 (131)
Q Consensus 62 ~~~~~iIYE~Hv~~-~~~~~~~gty~~~~~~~l~ylk~LGvt~VeLmP 108 (131)
.+..+.|.|+-+|| ++..+..-+-.+ .-+++..|-++||+.||.=+
T Consensus 43 m~~~V~I~DtTlRDG~Q~~g~~~s~e~-Ki~ia~~L~~~GV~~IEvGs 89 (347)
T PLN02746 43 LPKFVKIVEVGPRDGLQNEKNIVPTSV-KVELIQRLVSSGLPVVEATS 89 (347)
T ss_pred CCCceEEEECCCCccCcCCCCCCCHHH-HHHHHHHHHHcCCCEEEECC
Confidence 35678999999997 443443333333 23468899999999999753
No 87
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=34.09 E-value=66 Score=17.22 Aligned_cols=24 Identities=8% Similarity=0.113 Sum_probs=19.5
Q ss_pred cCHHHHHhhhhHHHHHcCCcEEEe
Q psy14038 83 ASYEDFVRVVIPRIVKQGYNAVQL 106 (131)
Q Consensus 83 gty~~~~~~~l~ylk~LGvt~VeL 106 (131)
|--..+...++.+++++|+++|.|
T Consensus 41 g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 41 GIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEe
Confidence 455667777899999999999876
No 88
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=33.95 E-value=1e+02 Score=25.60 Aligned_cols=47 Identities=9% Similarity=0.196 Sum_probs=31.7
Q ss_pred CCCeeEEEeeccc-cccCCCccCHHHHHhhhhHHHHHcCCcEEEe-ccce
Q psy14038 63 PDNLKIYESHVGI-CTQEQKCASYEDFVRVVIPRIVKQGYNAVQL-MAIM 110 (131)
Q Consensus 63 ~~~~iIYE~Hv~~-~~~~~~~gty~~~~~~~l~ylk~LGvt~VeL-mPv~ 110 (131)
+..+.|.++-+|+ ....+..-|..+.. +++..|.++||..||. +|.+
T Consensus 2 ~~~v~I~DtTLRDG~Q~~~~~~s~e~k~-~ia~~L~~~GV~~IE~G~p~~ 50 (378)
T PRK11858 2 PKDIEIVDTTLRDGEQTPGVVFTNEEKL-AIARMLDEIGVDQIEAGFPAV 50 (378)
T ss_pred CCeeEEEeCCCCccCcCCCCCCCHHHHH-HHHHHHHHhCCCEEEEeCCCc
Confidence 3467899999987 33233333444433 4689999999999997 5544
No 89
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=32.57 E-value=51 Score=21.51 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=19.6
Q ss_pred hhHHHHHcCCcEEEeccceecCC
Q psy14038 92 VIPRIVKQGYNAVQLMAIMEHAY 114 (131)
Q Consensus 92 ~l~ylk~LGvt~VeLmPv~e~~~ 114 (131)
.+..+.+.|++.|-++|.+=++.
T Consensus 49 ~l~~l~~~g~~~v~vvPlfl~~G 71 (101)
T cd03416 49 ALDELAAQGATRIVVVPLFLLAG 71 (101)
T ss_pred HHHHHHHcCCCEEEEEeeEeCCC
Confidence 47788899999999999997654
No 90
>TIGR03620 F420_MSMEG_4141 probable F420-dependent oxidoreductase, MSMEG_4141 family. Members of this protein family, related to F420-dependent oxidoreductases within the larger family of a bacterial luciferase (an FMN-dependent enzyme), occurs only within the small subset of species that synthesize F420. Most such proteins are from members of the Actinobacteria, but at least one species, Sphingomonas wittichii, belongs to the Alphaproteobacteria.
Probab=32.29 E-value=56 Score=26.05 Aligned_cols=29 Identities=7% Similarity=0.179 Sum_probs=24.7
Q ss_pred ccCHHHHHhhhhHHHHHcCCcEEEecccee
Q psy14038 82 CASYEDFVRVVIPRIVKQGYNAVQLMAIME 111 (131)
Q Consensus 82 ~gty~~~~~~~l~ylk~LGvt~VeLmPv~e 111 (131)
.||=.++.++ |...+++|++++.|.|+-.
T Consensus 233 ~Gtp~ev~e~-l~~~~~aGvd~l~l~~~~~ 261 (278)
T TIGR03620 233 WGDADTVAAR-VREHLDAGADHVAVQVLTD 261 (278)
T ss_pred eCCHHHHHHH-HHHHHhCCCCEEEEEecCC
Confidence 4788888888 7788999999999999744
No 91
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=32.06 E-value=48 Score=23.17 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=20.0
Q ss_pred hhHHHHHcCCcEEEeccceecCC
Q psy14038 92 VIPRIVKQGYNAVQLMAIMEHAY 114 (131)
Q Consensus 92 ~l~ylk~LGvt~VeLmPv~e~~~ 114 (131)
.|..|.+.|+++|-.+|.+=+++
T Consensus 61 aL~~l~~~G~~~V~V~Pl~l~~G 83 (127)
T cd03412 61 ALAKLAADGYTEVIVQSLHIIPG 83 (127)
T ss_pred HHHHHHHCCCCEEEEEeCeeECc
Confidence 48899999999999999996653
No 92
>TIGR02867 spore_II_P stage II sporulation protein P. Stage II sporulation protein P is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIIP, along with SpoIIM and SpoIID, is one of three major proteins involved in engulfment of the forespore by the mother cell. This protein family is named for the single member in Bacillus subtilis, although most sporulating bacteria have two members.
Probab=31.54 E-value=1e+02 Score=23.53 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=32.1
Q ss_pred eEEEeeccc-cccC-----------CCccCHHHHHhhhhHHHHHcCCcEEEeccce
Q psy14038 67 KIYESHVGI-CTQE-----------QKCASYEDFVRVVIPRIVKQGYNAVQLMAIM 110 (131)
Q Consensus 67 iIYE~Hv~~-~~~~-----------~~~gty~~~~~~~l~ylk~LGvt~VeLmPv~ 110 (131)
.||..|-.- |.+. +..++-.++++.+-..|.+.||+.+.--=+.
T Consensus 2 ~IYhTH~~Esy~p~~~~~~~~~~~~~~~~~V~~VG~~L~~~Le~~Gi~vihd~t~~ 57 (196)
T TIGR02867 2 FIYHTHSTESYLPELPGVTDPNAATHSEGNITKVGDRLAKELEEKGIGVIHDKTVH 57 (196)
T ss_pred EEEeCCCcccccCCCCCCCCcccccCCCCcHHHHHHHHHHHHHHCCCeEEEeCCcc
Confidence 578888774 4322 2346788889999999999999988766544
No 93
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=31.30 E-value=51 Score=29.94 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=21.7
Q ss_pred HhhhhHHHHHcCCcEEEeccceecCCC
Q psy14038 89 VRVVIPRIVKQGYNAVQLMAIMEHAYY 115 (131)
Q Consensus 89 ~~~~l~ylk~LGvt~VeLmPv~e~~~~ 115 (131)
.+++|+++++||+|+|=|-...+-.++
T Consensus 336 l~~l~~ri~~~~~~~VyLqafadp~gd 362 (672)
T PRK14581 336 LDKLVQRISDLRVTHVFLQAFSDPKGD 362 (672)
T ss_pred HHHHHHHHHhcCCCEEEEEeeeCCCCC
Confidence 356899999999999999887765443
No 94
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=30.99 E-value=1.1e+02 Score=25.13 Aligned_cols=45 Identities=7% Similarity=0.118 Sum_probs=29.8
Q ss_pred CeeEEEeeccc-cccCCCccCHHHHHhhhhHHHHHcCCcEEEe-ccce
Q psy14038 65 NLKIYESHVGI-CTQEQKCASYEDFVRVVIPRIVKQGYNAVQL-MAIM 110 (131)
Q Consensus 65 ~~iIYE~Hv~~-~~~~~~~gty~~~~~~~l~ylk~LGvt~VeL-mPv~ 110 (131)
++.|.++-+|+ ....+..-+..+.. +++..|.++||..||. +|.+
T Consensus 1 ~v~i~D~TLRDG~Q~~~~~~s~~~k~-~ia~~L~~~Gv~~IEvG~p~~ 47 (365)
T TIGR02660 1 PVIINDTTLRDGEQAPGVAFTAAEKL-AIARALDEAGVDELEVGIPAM 47 (365)
T ss_pred CcEEEeCCCCCcCcCCCCCCCHHHHH-HHHHHHHHcCCCEEEEeCCCC
Confidence 35677888886 32233334444433 4699999999999998 5543
No 95
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=30.48 E-value=83 Score=21.31 Aligned_cols=60 Identities=5% Similarity=0.104 Sum_probs=34.3
Q ss_pred CCCCeeEEEeec-cccccCCCccCHHHHHhhhhHHHH-HcCCcEEEeccceecCCCCCcCCCCCce
Q psy14038 62 KPDNLKIYESHV-GICTQEQKCASYEDFVRVVIPRIV-KQGYNAVQLMAIMEHAYYASFGYQVTSF 125 (131)
Q Consensus 62 ~~~~~iIYE~Hv-~~~~~~~~~gty~~~~~~~l~ylk-~LGvt~VeLmPv~e~~~~~~WGY~~~~~ 125 (131)
+.++..+.++.. +..+.+. -++++..+-..|. .||+..=-++=++.-....+||++...|
T Consensus 54 ~~~p~a~v~i~~~g~~~~e~----k~~l~~~i~~~l~~~lgi~~~rv~I~f~~~~~~~w~~~G~~f 115 (116)
T PTZ00397 54 SHDGCCFVRVTSIGGISRSN----NSSIAAAITKILASHLKVKSERVYIEFKDCSAQNWAFNGSTF 115 (116)
T ss_pred CCCceEEEEEEEecCCCHHH----HHHHHHHHHHHHHHHhCcCcccEEEEEEECChhheeEcceeC
Confidence 346888888874 4444332 3344444444454 4899643333344444567899987665
No 96
>PF10524 NfI_DNAbd_pre-N: Nuclear factor I protein pre-N-terminus; InterPro: IPR019548 Nuclear factor I (NF-I) or CCAAT box-binding transcription factor (CTF) [, ] (also known as TGGCA-binding proteins) are a family of vertebrate nuclear proteins which recognise and bind, as dimers, the palindromic DNA sequence 5'-TGGCANNNTGCCA-3'. CTF/NF-I binding sites are present in viral and cellular promoters and in the origin of DNA replication of Human adenovirus 2 (HAdV-2). The CTF/NF-I proteins were first identified as nuclear factor I, a collection of proteins that activate the replication of several Adenovirus serotypes (together with NF-II and NF-III) []. The family of proteins was also identified as the CTF transcription factors, before the NFI and CTF families were found to be identical []. The CTF/NF-I proteins are individually capable of activating transcription and DNA replication. In a given species, there are a large number of different CTF/NF-I proteins, generated both by alternative splicing and by the occurrence of four different genes. CTF/NF-1 proteins contain 400 to 600 amino acids. The N-terminal 200 amino-acid sequence, almost perfectly conserved in all species and genes sequenced, mediates site-specific DNA recognition, protein dimerisation and Adenovirus DNA replication. The C-terminal 100 amino acids contain the transcriptional activation domain. This activation domain is the target of gene expression regulatory pathways elicited by growth factors and it interacts with basal transcription factors and with histone H3 []. This entry represents the N terminus, of which 200 residues contain the DNA-binding and dimerisation domain, but also has an 8-47 residue highly conserved region 5' of this, whose function is not known. Deletion of the N-terminal 200 amino acids removes the DNA-binding activity, dimerisation-ability and the stimulation of adenovirus DNA replication [].
Probab=29.96 E-value=25 Score=20.47 Aligned_cols=18 Identities=17% Similarity=0.611 Sum_probs=14.7
Q ss_pred HHHHHhhhhHHHHHcCCc
Q psy14038 85 YEDFVRVVIPRIVKQGYN 102 (131)
Q Consensus 85 y~~~~~~~l~ylk~LGvt 102 (131)
+.-+++.+|||+|+.-+|
T Consensus 10 ~hpFiEalLP~Vk~fay~ 27 (44)
T PF10524_consen 10 FHPFIEALLPYVKAFAYT 27 (44)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 556788999999987765
No 97
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=29.85 E-value=53 Score=27.55 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=21.6
Q ss_pred hhHHHHHcCCcEEEeccceecCCCC
Q psy14038 92 VIPRIVKQGYNAVQLMAIMEHAYYA 116 (131)
Q Consensus 92 ~l~ylk~LGvt~VeLmPv~e~~~~~ 116 (131)
+..+|+++|.+.++++|+.+....+
T Consensus 175 i~~~l~~~g~~~i~fip~~~~~~~~ 199 (378)
T COG0641 175 IYHFLKSEGSKFIQFIPLVESDNRG 199 (378)
T ss_pred HHHHHHHcccceEEEEecccCCCCC
Confidence 5888999999999999999986654
No 98
>TIGR03557 F420_G6P_family F420-dependent oxidoreductase, G6PDH family. Members of this protein family include F420-dependent glucose-6-phosphate dehydrogenases (TIGR03554) and related proteins. All members of this family come from species that synthesize coenzyme F420.
Probab=29.38 E-value=69 Score=25.76 Aligned_cols=27 Identities=26% Similarity=0.589 Sum_probs=22.9
Q ss_pred cc-CHHHHHhhhhHHHHHcCCcEEEeccc
Q psy14038 82 CA-SYEDFVRVVIPRIVKQGYNAVQLMAI 109 (131)
Q Consensus 82 ~g-ty~~~~~~~l~ylk~LGvt~VeLmPv 109 (131)
.| |-.+++++ |..+++.|+++|.|.|.
T Consensus 268 ~ggtpe~~~~~-l~~~~~aG~d~~~l~~~ 295 (316)
T TIGR03557 268 CGPDPDRHVEA-VREYVDAGFDEVALVQI 295 (316)
T ss_pred cCCCHHHHHHH-HHHHHHCCCCEEEEECC
Confidence 35 78888888 66888999999999986
No 99
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=29.23 E-value=70 Score=29.05 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=19.2
Q ss_pred HhhhhHHHHHcCCcEEEeccceec
Q psy14038 89 VRVVIPRIVKQGYNAVQLMAIMEH 112 (131)
Q Consensus 89 ~~~~l~ylk~LGvt~VeLmPv~e~ 112 (131)
..++|+.||++|+|+|=|-....-
T Consensus 336 L~~lLdrlk~~G~ntV~lqafadp 359 (671)
T PRK14582 336 IDVLIQRVKDMQISTVYLQAFADP 359 (671)
T ss_pred HHHHHHHHHHcCCCEEEEEeccCC
Confidence 445799999999999998775543
No 100
>TIGR03842 F420_CPS_4043 F420-dependent oxidoreductase, CPS_4043 family. This model represents a family of putative F420-dependent oxidoreductases, fairly closely related to 5,10-methylenetetrahydromethanopterin reductase (mer, TIGR03555), both within the bacterial luciferase-like monoxygenase (LLM) family. A fairly deep split (to about 40 % sequence identity) in the present family separates a strictly Actinobacterial clade from an alpha/beta/gamma-proteobacterial clade, in which the member is often the only apparent F420-dependent LLM family member. The specific function, and whether Actinobacterial and Proteobacterial clades differ in function, are unknown.
Probab=29.06 E-value=68 Score=25.83 Aligned_cols=28 Identities=7% Similarity=0.108 Sum_probs=23.0
Q ss_pred ccCHHHHHhhhhHHHHHcCCcEEEeccce
Q psy14038 82 CASYEDFVRVVIPRIVKQGYNAVQLMAIM 110 (131)
Q Consensus 82 ~gty~~~~~~~l~ylk~LGvt~VeLmPv~ 110 (131)
.||=.+++++ |..+.++|++++.|++..
T Consensus 285 ~Gtpe~v~e~-l~~~~~~Gv~~~~l~~~~ 312 (330)
T TIGR03842 285 LGPAEAHIEK-LRELRALGVDQFAIYLQH 312 (330)
T ss_pred CCCHHHHHHH-HHHHHHcCCceEEEeCCC
Confidence 5788888888 677789999999988653
No 101
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=29.05 E-value=1e+02 Score=27.28 Aligned_cols=47 Identities=9% Similarity=0.252 Sum_probs=35.8
Q ss_pred CCeeEEEeeccccccCCCccCHHHHHhhhhHHHHHcCCcEEEeccceecC
Q psy14038 64 DNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHA 113 (131)
Q Consensus 64 ~~~iIYE~Hv~~~~~~~~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~ 113 (131)
..+-+|.++... .-..|.|-.++-.+++-+.+-|-..++++|+..-.
T Consensus 16 ~~v~L~~~~~~~---~~GIGDfgdla~~~~d~~~~~g~~~~qi~Plh~~~ 62 (520)
T COG1640 16 SGVQLYSLRLPG---SWGIGDFGDLAYLFVDFLARHGQDYWQILPLHATG 62 (520)
T ss_pred ceeEEeeeccCC---CCCccchhhHHHHHHHHHHHccCCeEEeccCCccc
Confidence 445566655532 22368899999998999999999999999998754
No 102
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=28.88 E-value=48 Score=24.99 Aligned_cols=20 Identities=20% Similarity=0.213 Sum_probs=16.0
Q ss_pred hhhhHHHHHcCCcEEEeccc
Q psy14038 90 RVVIPRIVKQGYNAVQLMAI 109 (131)
Q Consensus 90 ~~~l~ylk~LGvt~VeLmPv 109 (131)
++.+..+++.+-.+||+||=
T Consensus 107 ~~~~~~i~~~~PD~vEilPg 126 (175)
T PF04309_consen 107 ETGIKQIEQSKPDAVEILPG 126 (175)
T ss_dssp HHHHHHHHHHT-SEEEEESC
T ss_pred HHHHHHHhhcCCCEEEEchH
Confidence 34688899999999999995
No 103
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=28.61 E-value=86 Score=21.54 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=21.3
Q ss_pred CccCHHHHHhhhhHHHHHcCCcEEEec
Q psy14038 81 KCASYEDFVRVVIPRIVKQGYNAVQLM 107 (131)
Q Consensus 81 ~~gty~~~~~~~l~ylk~LGvt~VeLm 107 (131)
+..+|..+.+- ++.+|+.|++.|-|+
T Consensus 93 ~~~~~~~vv~v-~d~~~~~G~~~v~l~ 118 (121)
T TIGR02804 93 KEAKFQDFVTI-TDMLKAKEHENVQIV 118 (121)
T ss_pred CCCCHhHHHHH-HHHHHHcCCCeEEEE
Confidence 34578887776 999999999998875
No 104
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=28.26 E-value=54 Score=25.18 Aligned_cols=19 Identities=11% Similarity=0.358 Sum_probs=16.0
Q ss_pred hhhhHHHHHcCCcEEEecc
Q psy14038 90 RVVIPRIVKQGYNAVQLMA 108 (131)
Q Consensus 90 ~~~l~ylk~LGvt~VeLmP 108 (131)
++.++.++++|+++|||..
T Consensus 16 ~~~l~~~~~~G~~~vEl~~ 34 (275)
T PRK09856 16 EHAFRDASELGYDGIEIWG 34 (275)
T ss_pred HHHHHHHHHcCCCEEEEcc
Confidence 3459999999999999953
No 105
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=28.25 E-value=58 Score=22.27 Aligned_cols=23 Identities=4% Similarity=0.281 Sum_probs=19.5
Q ss_pred hhhHHHHHcCCcEEEeccceecC
Q psy14038 91 VVIPRIVKQGYNAVQLMAIMEHA 113 (131)
Q Consensus 91 ~~l~ylk~LGvt~VeLmPv~e~~ 113 (131)
..|..|++.|++.|-++|.+=+.
T Consensus 50 ~~l~~l~~~g~~~v~vvPlfl~~ 72 (126)
T PRK00923 50 EALKKLIGTGADKIIVVPVFLAH 72 (126)
T ss_pred HHHHHHHHcCCCEEEEEchhhcc
Confidence 34888999999999999999554
No 106
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=28.03 E-value=31 Score=13.12 Aligned_cols=6 Identities=33% Similarity=0.833 Sum_probs=3.8
Q ss_pred CCCCcC
Q psy14038 114 YYASFG 119 (131)
Q Consensus 114 ~~~~WG 119 (131)
..+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 346787
No 107
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=27.49 E-value=94 Score=31.38 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=25.8
Q ss_pred CccCHHHHHhhhhHHHHHcCCcEEEecccee
Q psy14038 81 KCASYEDFVRVVIPRIVKQGYNAVQLMAIME 111 (131)
Q Consensus 81 ~~gty~~~~~~~l~ylk~LGvt~VeLmPv~e 111 (131)
..|.|.. +.++++.+++.|...|+|+|+..
T Consensus 189 GIGDfgd-L~~~~d~la~~Ga~~lqlnPLhA 218 (1693)
T PRK14507 189 GIGDFGD-LGRLVRDAALRGASFLGLSPLHA 218 (1693)
T ss_pred CcccHHH-HHHHHHHHHHcCCCEEEEcCCCC
Confidence 4688887 55669999999999999999984
No 108
>PRK03739 2-isopropylmalate synthase; Validated
Probab=27.08 E-value=2.2e+02 Score=25.17 Aligned_cols=56 Identities=13% Similarity=0.129 Sum_probs=35.7
Q ss_pred CCCcCCCCCCCCCCeeEEEeeccc-cccCCCccCHHHHHhhhhHHHHHcCCcEEEe-ccce
Q psy14038 52 KHKWTSSKPKKPDNLKIYESHVGI-CTQEQKCASYEDFVRVVIPRIVKQGYNAVQL-MAIM 110 (131)
Q Consensus 52 ~~~w~~~~~~~~~~~iIYE~Hv~~-~~~~~~~gty~~~~~~~l~ylk~LGvt~VeL-mPv~ 110 (131)
..+|-.+. ..+..+|.++-+|+ .+..+..-+-.+-. +++..|.++||..||. .|.+
T Consensus 19 ~~~~~~~~--~~~~~~i~dttLRDGeQ~~gv~~s~~~Ki-~ia~~L~~~GV~~IE~GfP~~ 76 (552)
T PRK03739 19 DRTWPSKT--ITKAPIWCSVDLRDGNQALIEPMSPERKL-RMFDLLVKIGFKEIEVGFPSA 76 (552)
T ss_pred CCCCCCcc--cCCCCeEeeCCCCCcCcCCCCCCCHHHHH-HHHHHHHHcCCCEEEEECCCc
Confidence 34665543 34556788999996 33333333333322 3688899999999998 6765
No 109
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=26.94 E-value=56 Score=25.34 Aligned_cols=16 Identities=13% Similarity=0.246 Sum_probs=14.5
Q ss_pred hhHHHHHcCCcEEEec
Q psy14038 92 VIPRIVKQGYNAVQLM 107 (131)
Q Consensus 92 ~l~ylk~LGvt~VeLm 107 (131)
.+..++++|+++|||-
T Consensus 21 ~l~~~~~~G~~~VEl~ 36 (279)
T TIGR00542 21 RLQLAKTCGFDFVEMS 36 (279)
T ss_pred HHHHHHHcCCCEEEEe
Confidence 4899999999999994
No 110
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=26.59 E-value=98 Score=21.76 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=14.9
Q ss_pred HHHHHhhhhHHHHHcCCcEEEeccceec
Q psy14038 85 YEDFVRVVIPRIVKQGYNAVQLMAIMEH 112 (131)
Q Consensus 85 y~~~~~~~l~ylk~LGvt~VeLmPv~e~ 112 (131)
..++.+- +..++++|++.|.++|..-.
T Consensus 166 ~~~~~~~-~~~~~~~~~~~i~~~~~~p~ 192 (216)
T smart00729 166 EEDFEET-LKLLKELGPDRVSIFPLSPR 192 (216)
T ss_pred HHHHHHH-HHHHHHcCCCeEEeeeeeeC
Confidence 3443333 56666666666666665543
No 111
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=26.40 E-value=73 Score=21.86 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=17.9
Q ss_pred HHHHhhhhHHHHHcCCcEEEec
Q psy14038 86 EDFVRVVIPRIVKQGYNAVQLM 107 (131)
Q Consensus 86 ~~~~~~~l~ylk~LGvt~VeLm 107 (131)
..+++++...++++|++.|++.
T Consensus 46 ~~~a~~~~~~~~~~gi~~v~v~ 67 (108)
T TIGR03632 46 QLAAEDAAKKAKEFGMKTVDVY 67 (108)
T ss_pred HHHHHHHHHHHHHcCCcEEEEE
Confidence 3456788999999999998864
No 112
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=26.29 E-value=1e+02 Score=21.20 Aligned_cols=26 Identities=23% Similarity=0.520 Sum_probs=21.2
Q ss_pred CccCHHHHHhhhhHHHHHcCCcEEEec
Q psy14038 81 KCASYEDFVRVVIPRIVKQGYNAVQLM 107 (131)
Q Consensus 81 ~~gty~~~~~~~l~ylk~LGvt~VeLm 107 (131)
+..+|..+.+- ++.+|+.|++.|-|+
T Consensus 102 ~~~~~~~vv~v-md~~~~~G~~~v~l~ 127 (129)
T TIGR02801 102 KTVPYGEVIKV-MALLKQAGIEKVGLI 127 (129)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCeEEEe
Confidence 34578887776 999999999998774
No 113
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=26.23 E-value=1.1e+02 Score=21.02 Aligned_cols=26 Identities=27% Similarity=0.576 Sum_probs=21.2
Q ss_pred CccCHHHHHhhhhHHHHHcCCcEEEec
Q psy14038 81 KCASYEDFVRVVIPRIVKQGYNAVQLM 107 (131)
Q Consensus 81 ~~gty~~~~~~~l~ylk~LGvt~VeLm 107 (131)
+.-.|..++.- ++.+|+.|++.|-|+
T Consensus 94 ~~~~~~~vv~v-~d~~~~aG~~~v~l~ 119 (122)
T TIGR02803 94 KTVDYGDLMKV-MNLLRQAGYLKIGLV 119 (122)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEE
Confidence 34578887776 999999999999876
No 114
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=26.15 E-value=1e+02 Score=19.52 Aligned_cols=24 Identities=17% Similarity=0.031 Sum_probs=16.4
Q ss_pred EeeEEEEEECCEEEEecCcceeeeeeCC
Q psy14038 7 FYSILFYSVLFYSILRLSPWATYVTEPP 34 (131)
Q Consensus 7 ~y~~l~~~~~g~~~~~~DPyA~~~~~~~ 34 (131)
.|+|+ ++|.+. +.||.+.....++
T Consensus 50 ~Ykf~---vdg~~~-~~DP~~~~~~~~~ 73 (82)
T cd02861 50 EYKFV---VDGEWV-IVDPNAAAYVDDG 73 (82)
T ss_pred EEEEE---ECCEEe-eCCCCCCceecCC
Confidence 56766 467663 6899988765554
No 115
>TIGR03554 F420_G6P_DH glucose-6-phosphate dehydrogenase, F420-dependent. This family consists of the F420-dependent glucose-6-phosphate dehydrogenase of Mycobacterium and Nocardia. It shows homology to several other F420-dependent enzymes rather than to the NAD or NADP-dependent glucose-6-phosphate dehydrogenases.
Probab=25.98 E-value=83 Score=25.44 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=22.3
Q ss_pred ccCHHHHHhhhhHHHHHcCCcEEEeccc
Q psy14038 82 CASYEDFVRVVIPRIVKQGYNAVQLMAI 109 (131)
Q Consensus 82 ~gty~~~~~~~l~ylk~LGvt~VeLmPv 109 (131)
.||=.+++++ |..+++.|++++.|.+.
T Consensus 285 ~Gtpe~v~e~-l~~~~~aGv~~~~l~~~ 311 (331)
T TIGR03554 285 ASDPDEAVEQ-VGQYVDWGLNHLVFHAP 311 (331)
T ss_pred cCCHHHHHHH-HHHHHHcCCCEEEEECC
Confidence 4777888888 66788999999999874
No 116
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=25.85 E-value=68 Score=27.62 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=27.2
Q ss_pred CHHHHHhhhhHHHHHcCCc--EEEeccceecCCC
Q psy14038 84 SYEDFVRVVIPRIVKQGYN--AVQLMAIMEHAYY 115 (131)
Q Consensus 84 ty~~~~~~~l~ylk~LGvt--~VeLmPv~e~~~~ 115 (131)
.|.++..++...+|..|++ -|.++||..+...
T Consensus 164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~ 197 (428)
T COG5256 164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGD 197 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCccCCeEEecccccCC
Confidence 5888888888888899999 5999999988654
No 117
>TIGR03860 FMN_nitrolo FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents.
Probab=25.54 E-value=82 Score=26.53 Aligned_cols=29 Identities=10% Similarity=0.089 Sum_probs=25.8
Q ss_pred ccCHHHHHhhhhHHHHHcCCcEEEeccce
Q psy14038 82 CASYEDFVRVVIPRIVKQGYNAVQLMAIM 110 (131)
Q Consensus 82 ~gty~~~~~~~l~ylk~LGvt~VeLmPv~ 110 (131)
.||..++++++...+++.|++.+.|+|..
T Consensus 360 vGtpe~vad~l~~~~~~~g~dgf~l~~~~ 388 (422)
T TIGR03860 360 VGTPEQVADQLEEWFEEGAADGFNLMPPV 388 (422)
T ss_pred eeCHHHHHHHHHHHHHhcCCCeEEEeCCC
Confidence 59999999997777899999999999876
No 118
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=25.54 E-value=57 Score=24.65 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=18.3
Q ss_pred HHhhhhHHHHHcCCcEEEeccc
Q psy14038 88 FVRVVIPRIVKQGYNAVQLMAI 109 (131)
Q Consensus 88 ~~~~~l~ylk~LGvt~VeLmPv 109 (131)
..++.++.+|++|+|+|-|.--
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~ 43 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVG 43 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEE
T ss_pred CHHHHHHHHHHCCCCEEEeCCC
Confidence 5666799999999999997554
No 119
>TIGR03555 F420_mer 5,10-methylenetetrahydromethanopterin reductase. Members of this protein family are 5,10-methylenetetrahydromethanopterin reductase, an F420-dependent enzyme of methanogenesis. It is restricted to the Archaea.
Probab=25.44 E-value=87 Score=25.12 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.0
Q ss_pred ccCHHHHHhhhhHHHHHcCCcEEEec
Q psy14038 82 CASYEDFVRVVIPRIVKQGYNAVQLM 107 (131)
Q Consensus 82 ~gty~~~~~~~l~ylk~LGvt~VeLm 107 (131)
.||-.+++++ |..++++|++++.|.
T Consensus 281 ~Gtpe~v~~~-l~~~~~~Gvd~~~l~ 305 (325)
T TIGR03555 281 AGTPDDVIEK-IEELLKAGVTQVVAG 305 (325)
T ss_pred CCCHHHHHHH-HHHHHHcCCCEEEec
Confidence 4788888888 677889999999985
No 120
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=25.34 E-value=1.6e+02 Score=24.46 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=29.3
Q ss_pred ccCHHHHHhhhhHHHHHcCCcEEEeccceecCC-CCCcCCCCCc
Q psy14038 82 CASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAY-YASFGYQVTS 124 (131)
Q Consensus 82 ~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~-~~~WGY~~~~ 124 (131)
+-+...+.+. +..+.++|+++|-|-||-++-+ .++=.|++-+
T Consensus 57 r~sid~l~~~-~~~~~~~Gi~~v~lFgv~~~Kd~~gs~A~~~~g 99 (322)
T PRK13384 57 RLPESALADE-IERLYALGIRYVMPFGISHHKDAKGSDTWDDNG 99 (322)
T ss_pred eECHHHHHHH-HHHHHHcCCCEEEEeCCCCCCCCCcccccCCCC
Confidence 4456666666 9999999999999999966532 2344455433
No 121
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=25.01 E-value=72 Score=22.65 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=15.9
Q ss_pred hhhhHHHHHcCCcEEEecc
Q psy14038 90 RVVIPRIVKQGYNAVQLMA 108 (131)
Q Consensus 90 ~~~l~ylk~LGvt~VeLmP 108 (131)
++.+++||++|+|+|.+--
T Consensus 3 ~~~~~~lk~~~v~si~i~a 21 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFA 21 (132)
T ss_pred HHHHHHHHHhCCCEEEEEc
Confidence 4568999999999999843
No 122
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=24.63 E-value=71 Score=24.31 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=18.1
Q ss_pred HhhhhHHHHHcCCcEEEeccc
Q psy14038 89 VRVVIPRIVKQGYNAVQLMAI 109 (131)
Q Consensus 89 ~~~~l~ylk~LGvt~VeLmPv 109 (131)
.++.+..+++++..+||.||=
T Consensus 110 l~~~~~~i~~~~pD~iEvLPG 130 (181)
T COG1954 110 LEKGIKQIEKSEPDFIEVLPG 130 (181)
T ss_pred HHHHHHHHHHcCCCEEEEcCc
Confidence 356799999999999999993
No 123
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=24.13 E-value=66 Score=26.15 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=13.8
Q ss_pred HhhhhHHHHHcCCcEEEe
Q psy14038 89 VRVVIPRIVKQGYNAVQL 106 (131)
Q Consensus 89 ~~~~l~ylk~LGvt~VeL 106 (131)
-+..|.-+|++|+|+|+.
T Consensus 26 W~~~l~k~ka~G~n~v~~ 43 (319)
T PF01301_consen 26 WRDRLQKMKAAGLNTVST 43 (319)
T ss_dssp HHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHhCCcceEEE
Confidence 344588899999999985
No 124
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.99 E-value=66 Score=25.17 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=15.5
Q ss_pred hhhHHHHHcCCcEEEecc
Q psy14038 91 VVIPRIVKQGYNAVQLMA 108 (131)
Q Consensus 91 ~~l~ylk~LGvt~VeLmP 108 (131)
+.++.++++|++++||..
T Consensus 15 ~a~~~~~~~G~~~~qif~ 32 (274)
T TIGR00587 15 AAYNRAAEIGATAFMFFL 32 (274)
T ss_pred HHHHHHHHhCCCEEEEEe
Confidence 359999999999999954
No 125
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=23.96 E-value=56 Score=21.11 Aligned_cols=20 Identities=10% Similarity=0.290 Sum_probs=15.9
Q ss_pred hhhHHHHHcCCcEEEeccce
Q psy14038 91 VVIPRIVKQGYNAVQLMAIM 110 (131)
Q Consensus 91 ~~l~ylk~LGvt~VeLmPv~ 110 (131)
++++.||++|=+.|-.+||.
T Consensus 54 ~~~~~Lk~~GA~~Ilv~pi~ 73 (75)
T PF08029_consen 54 DLMDKLKAAGASDILVLPIE 73 (75)
T ss_dssp HHHHHHHCTT-EEEEEEE-S
T ss_pred HHHHHHHHcCCCEEEEEecc
Confidence 46999999999999999985
No 126
>PLN02321 2-isopropylmalate synthase
Probab=23.95 E-value=1.9e+02 Score=26.21 Aligned_cols=46 Identities=11% Similarity=0.287 Sum_probs=32.5
Q ss_pred CCCeeEEEeeccc-cccCCCccCHHHHHhhhhHHHHHcCCcEEEe-ccc
Q psy14038 63 PDNLKIYESHVGI-CTQEQKCASYEDFVRVVIPRIVKQGYNAVQL-MAI 109 (131)
Q Consensus 63 ~~~~iIYE~Hv~~-~~~~~~~gty~~~~~~~l~ylk~LGvt~VeL-mPv 109 (131)
+..+.|+++-+|| .+..+..-|-.+-. +++..|.++||..||. .|.
T Consensus 84 ~~~V~I~DtTLRDGeQ~~g~~~s~eeKl-~Ia~~L~~lGVd~IEvGfP~ 131 (632)
T PLN02321 84 PNYVRIFDTTLRDGEQSPGATLTSKEKL-DIARQLAKLGVDIIEAGFPI 131 (632)
T ss_pred CCceEEEECCCCccccCCCCCCCHHHHH-HHHHHHHHcCCCEEEEeCcC
Confidence 5678999999997 33344434444433 3588999999999997 443
No 127
>PRK09989 hypothetical protein; Provisional
Probab=23.88 E-value=74 Score=24.37 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=14.7
Q ss_pred hhHHHHHcCCcEEEecc
Q psy14038 92 VIPRIVKQGYNAVQLMA 108 (131)
Q Consensus 92 ~l~ylk~LGvt~VeLmP 108 (131)
.+..++++|+.+|||.-
T Consensus 20 ~l~~~~~~Gfd~VEl~~ 36 (258)
T PRK09989 20 RFAAARKAGFDAVEFLF 36 (258)
T ss_pred HHHHHHHcCCCEEEECC
Confidence 38889999999999954
No 128
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=23.73 E-value=70 Score=24.50 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=15.1
Q ss_pred hhHHHHHcCCcEEEecc
Q psy14038 92 VIPRIVKQGYNAVQLMA 108 (131)
Q Consensus 92 ~l~ylk~LGvt~VeLmP 108 (131)
.+..++++||..|||..
T Consensus 20 ~l~~~a~~Gf~~VEl~~ 36 (258)
T PRK09997 20 RFEKAAQCGFRGVEFMF 36 (258)
T ss_pred HHHHHHHhCCCEEEEcC
Confidence 48889999999999965
No 129
>cd01096 Alkanal_monooxygenase Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.
Probab=23.56 E-value=98 Score=24.66 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=23.3
Q ss_pred CccCHHHHHhhhhHHHHHcCCcEEEeccc
Q psy14038 81 KCASYEDFVRVVIPRIVKQGYNAVQLMAI 109 (131)
Q Consensus 81 ~~gty~~~~~~~l~ylk~LGvt~VeLmPv 109 (131)
-.||-.++++++...++++|++++-|++-
T Consensus 272 ~vGtpe~v~~~l~~~~~~~G~~~~~~~~~ 300 (315)
T cd01096 272 AVGTPEECIEIIQLAIEATGIKNILLSFE 300 (315)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEecc
Confidence 35888888999557899999999887654
No 130
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=23.54 E-value=72 Score=24.24 Aligned_cols=17 Identities=12% Similarity=0.346 Sum_probs=14.6
Q ss_pred hhHHHHHcCCcEEEecc
Q psy14038 92 VIPRIVKQGYNAVQLMA 108 (131)
Q Consensus 92 ~l~ylk~LGvt~VeLmP 108 (131)
.+.-++++|++.|||.-
T Consensus 19 ~~~~~~e~G~~~vEl~~ 35 (254)
T TIGR03234 19 RFAAAAQAGFTGVEYLF 35 (254)
T ss_pred HHHHHHHcCCCEEEecC
Confidence 47788999999999964
No 131
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=23.34 E-value=2.2e+02 Score=20.61 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=21.1
Q ss_pred EEEeeccccccCCCccCHHHHHhhhhHHHHHcCCcEEE
Q psy14038 68 IYESHVGICTQEQKCASYEDFVRVVIPRIVKQGYNAVQ 105 (131)
Q Consensus 68 IYE~Hv~~~~~~~~~gty~~~~~~~l~ylk~LGvt~Ve 105 (131)
|-=||-++ ....|-.. .+.+|+.||+.|++-|-
T Consensus 154 Iil~Hd~~----~~~~t~~~-l~~~i~~l~~~Gy~~vt 186 (191)
T TIGR02764 154 IILLHASD----SAKQTVKA-LPTIIKKLKEKGYEFVT 186 (191)
T ss_pred EEEEeCCC----CcHhHHHH-HHHHHHHHHHCCCEEEE
Confidence 44577642 12234444 47789999999998654
No 132
>PF08986 DUF1889: Domain of unknown function (DUF1889); InterPro: IPR015079 This family consist of hypothetical bacterial proteins. ; PDB: 2JN8_A 2ES9_A.
Probab=23.22 E-value=56 Score=22.67 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=9.8
Q ss_pred HhhhhHHHHHcCCcE
Q psy14038 89 VRVVIPRIVKQGYNA 103 (131)
Q Consensus 89 ~~~~l~ylk~LGvt~ 103 (131)
+.-++.||++||+-+
T Consensus 50 AKGi~KyL~elGvPa 64 (119)
T PF08986_consen 50 AKGIFKYLKELGVPA 64 (119)
T ss_dssp HHHHHHHHHHCT---
T ss_pred HHHHHHHHHHcCCCC
Confidence 334799999999853
No 133
>PRK11024 colicin uptake protein TolR; Provisional
Probab=23.11 E-value=1.3e+02 Score=21.30 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=21.1
Q ss_pred CccCHHHHHhhhhHHHHHcCCcEEEec
Q psy14038 81 KCASYEDFVRVVIPRIVKQGYNAVQLM 107 (131)
Q Consensus 81 ~~gty~~~~~~~l~ylk~LGvt~VeLm 107 (131)
+.-.|..+++- ++.+|+.|++.|.|.
T Consensus 112 ~~~~~~~vv~v-md~~k~aG~~~v~l~ 137 (141)
T PRK11024 112 KDVPYDEIIKA-LNLLHSAGVKSVGLM 137 (141)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCeEEEE
Confidence 34578887776 999999999998774
No 134
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=23.01 E-value=1.1e+02 Score=20.71 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=18.5
Q ss_pred HhhhhHHHHHcCCcEEEeccce
Q psy14038 89 VRVVIPRIVKQGYNAVQLMAIM 110 (131)
Q Consensus 89 ~~~~l~ylk~LGvt~VeLmPv~ 110 (131)
.-.+++.||++|-..|--+||.
T Consensus 76 v~~~~~~Lk~~GA~~Ilv~~i~ 97 (100)
T TIGR03455 76 VNELIDKLKAAGARDILVLPIE 97 (100)
T ss_pred HHHHHHHHHHcCCCeEEEechH
Confidence 3346999999999999999874
No 135
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=22.97 E-value=1.2e+02 Score=23.06 Aligned_cols=30 Identities=10% Similarity=0.269 Sum_probs=20.7
Q ss_pred cCCCccCHHHH-HhhhhHHHHHcCCcEEEec
Q psy14038 78 QEQKCASYEDF-VRVVIPRIVKQGYNAVQLM 107 (131)
Q Consensus 78 ~~~~~gty~~~-~~~~l~ylk~LGvt~VeLm 107 (131)
|..++-.|... ..-.|+..++||++-|.+-
T Consensus 107 PseR~KGYA~emLkl~L~~ar~lgi~~Vlvt 137 (174)
T COG3981 107 PSERRKGYAKEMLKLALEKARELGIKKVLVT 137 (174)
T ss_pred hhhhccCHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 33344466443 4457999999999998763
No 136
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=22.92 E-value=1.3e+02 Score=21.62 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=22.3
Q ss_pred CCccCHHHHHhhhhHHHHHcCCcEEEec
Q psy14038 80 QKCASYEDFVRVVIPRIVKQGYNAVQLM 107 (131)
Q Consensus 80 ~~~gty~~~~~~~l~ylk~LGvt~VeLm 107 (131)
++...|..+.+- ++-|++.|+..|-|+
T Consensus 105 D~~v~y~~vv~v-m~~l~~aG~~~v~L~ 131 (137)
T COG0848 105 DKNVKYGTVVKV-MDLLKEAGFKKVGLV 131 (137)
T ss_pred CCCCCHHHHHHH-HHHHHHcCCceEEEE
Confidence 344678887776 999999999999886
No 137
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=22.69 E-value=1.1e+02 Score=20.87 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=20.2
Q ss_pred cCHHHHHhhhhHHHHHcCCcEEEec
Q psy14038 83 ASYEDFVRVVIPRIVKQGYNAVQLM 107 (131)
Q Consensus 83 gty~~~~~~~l~ylk~LGvt~VeLm 107 (131)
|==.++...++.+++++|++.|+|-
T Consensus 101 GiG~~ll~~~~~~a~~~g~~~i~l~ 125 (150)
T PLN02706 101 GLGKKIIEALTEHARSAGCYKVILD 125 (150)
T ss_pred CHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3335667788999999999999886
No 138
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=22.68 E-value=1.1e+02 Score=24.77 Aligned_cols=20 Identities=5% Similarity=0.120 Sum_probs=16.6
Q ss_pred hhHHHHHcCCcEEEecccee
Q psy14038 92 VIPRIVKQGYNAVQLMAIME 111 (131)
Q Consensus 92 ~l~ylk~LGvt~VeLmPv~e 111 (131)
++++++++|+..|.+.|...
T Consensus 183 ~~~~~~~lGv~~i~i~p~~~ 202 (318)
T TIGR03470 183 FFDYLTDLGVDGMTISPGYA 202 (318)
T ss_pred HHHHHHHcCCCEEEEecCcc
Confidence 48888999998888888764
No 139
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=22.67 E-value=95 Score=21.80 Aligned_cols=20 Identities=5% Similarity=0.132 Sum_probs=16.9
Q ss_pred HHhhhhHHHHHcCCcEEEec
Q psy14038 88 FVRVVIPRIVKQGYNAVQLM 107 (131)
Q Consensus 88 ~~~~~l~ylk~LGvt~VeLm 107 (131)
.++++...++++|++.|+++
T Consensus 51 aa~~~~~~~~~~Gi~~v~v~ 70 (114)
T TIGR03628 51 AAGRAAEKAKERGITGLHIK 70 (114)
T ss_pred HHHHHHHHHHHcCCcEEEEE
Confidence 36778999999999999875
No 140
>KOG0407|consensus
Probab=22.59 E-value=79 Score=22.43 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=17.7
Q ss_pred cCHHHH--HhhhhHHHHHcCCcEEEe
Q psy14038 83 ASYEDF--VRVVIPRIVKQGYNAVQL 106 (131)
Q Consensus 83 gty~~~--~~~~l~ylk~LGvt~VeL 106 (131)
.-|..+ ++.+...+|++|||++.+
T Consensus 58 spyaamlaaqdva~kck~~gi~alh~ 83 (139)
T KOG0407|consen 58 SPYAAMLAAQDVAAKCKELGITALHI 83 (139)
T ss_pred ChHHHHHHHHHHHHHHHhcCeeEEEE
Confidence 456654 345688999999998765
No 141
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.23 E-value=78 Score=24.28 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=14.4
Q ss_pred hhHHHHHcCCcEEEec
Q psy14038 92 VIPRIVKQGYNAVQLM 107 (131)
Q Consensus 92 ~l~ylk~LGvt~VeLm 107 (131)
.++.++++|+..|||=
T Consensus 21 ~~~~~~~~G~~~iEl~ 36 (284)
T PRK13210 21 RLVFAKELGFDFVEMS 36 (284)
T ss_pred HHHHHHHcCCCeEEEe
Confidence 4888999999999994
No 142
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.04 E-value=92 Score=21.72 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=16.4
Q ss_pred HhhhhHHHHHcCCcEEEecc
Q psy14038 89 VRVVIPRIVKQGYNAVQLMA 108 (131)
Q Consensus 89 ~~~~l~ylk~LGvt~VeLmP 108 (131)
.++ +.|++..|+|+++|=.
T Consensus 60 ~DQ-l~~l~R~GFdsf~l~~ 78 (110)
T PF06073_consen 60 RDQ-LFYLRRCGFDSFELRE 78 (110)
T ss_pred HHH-HHHHHHcCCCEEEeCC
Confidence 456 9999999999999865
No 143
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=21.77 E-value=77 Score=21.74 Aligned_cols=20 Identities=10% Similarity=0.179 Sum_probs=16.8
Q ss_pred HHhhhhHHHHHcCCcEEEec
Q psy14038 88 FVRVVIPRIVKQGYNAVQLM 107 (131)
Q Consensus 88 ~~~~~l~ylk~LGvt~VeLm 107 (131)
+++.++..++++|++.|++.
T Consensus 48 ~a~~~~~~~~~~gi~~v~v~ 67 (110)
T PF00411_consen 48 AAEKIAKKAKELGIKTVRVK 67 (110)
T ss_dssp HHHHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEE
Confidence 46778999999999988864
No 144
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=21.74 E-value=2.4e+02 Score=24.73 Aligned_cols=46 Identities=13% Similarity=0.184 Sum_probs=31.6
Q ss_pred CCeeEEEeeccc-cccCCCccCHHHHHhhhhHHHHHcCCcEEEe-ccce
Q psy14038 64 DNLKIYESHVGI-CTQEQKCASYEDFVRVVIPRIVKQGYNAVQL-MAIM 110 (131)
Q Consensus 64 ~~~iIYE~Hv~~-~~~~~~~gty~~~~~~~l~ylk~LGvt~VeL-mPv~ 110 (131)
..+.|.++-+|+ ....+..-+-.+.. +++..|.++||..||. .|..
T Consensus 4 ~~V~I~DtTLRDG~Q~~g~~~s~e~Kl-~ia~~L~~~Gvd~IEvG~p~a 51 (524)
T PRK12344 4 ERIELYDTTLRDGAQGEGISFSVEDKL-RIARKLDELGVDYIEGGWPGS 51 (524)
T ss_pred CceEEEeCCCCCcCcCCCCCCCHHHHH-HHHHHHHHcCCCEEEEcCCcC
Confidence 457889999987 32233334444433 3588899999999999 7764
No 145
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=21.41 E-value=1.3e+02 Score=23.62 Aligned_cols=19 Identities=5% Similarity=0.043 Sum_probs=15.5
Q ss_pred hhhHHHHHcCCcEEEe-ccc
Q psy14038 91 VVIPRIVKQGYNAVQL-MAI 109 (131)
Q Consensus 91 ~~l~ylk~LGvt~VeL-mPv 109 (131)
+++..|.++||..||+ +|-
T Consensus 24 ~i~~~L~~~Gv~~IE~G~~~ 43 (273)
T cd07941 24 RIARKLDELGVDYIEGGWPG 43 (273)
T ss_pred HHHHHHHHcCCCEEEecCCc
Confidence 4688899999999998 553
No 146
>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.
Probab=21.10 E-value=40 Score=19.58 Aligned_cols=25 Identities=4% Similarity=0.017 Sum_probs=16.9
Q ss_pred cCHHHHHhhhhHHHHHcCCcEEEec
Q psy14038 83 ASYEDFVRVVIPRIVKQGYNAVQLM 107 (131)
Q Consensus 83 gty~~~~~~~l~ylk~LGvt~VeLm 107 (131)
|.|.++=..-..-|+..||+.-|.|
T Consensus 22 g~f~glP~eW~~ll~~sgis~~e~~ 46 (46)
T cd01093 22 GEFTGLPEEWQRLLKSSGITKEEQK 46 (46)
T ss_pred CcccCCCHHHHHHHHHcCCCHHHcC
Confidence 4566665555677788899866543
No 147
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=20.85 E-value=63 Score=22.40 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=20.9
Q ss_pred CccCHHHHHhhhhHHHHHcCCcEEE
Q psy14038 81 KCASYEDFVRVVIPRIVKQGYNAVQ 105 (131)
Q Consensus 81 ~~gty~~~~~~~l~ylk~LGvt~Ve 105 (131)
..+.|..+.+++-|-+++|||.+.|
T Consensus 75 ~~~~y~~~lqeikp~l~ELGI~t~E 99 (103)
T cd00923 75 HKEIYPYILQEIKPTLKELGISTPE 99 (103)
T ss_pred chhhHHHHHHHHhHHHHHHCCCCHH
Confidence 3457888999999999999998765
No 148
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=20.72 E-value=2.2e+02 Score=23.59 Aligned_cols=42 Identities=26% Similarity=0.286 Sum_probs=29.6
Q ss_pred ccCHHHHHhhhhHHHHHcCCcEEEeccceecCC-CCCcCCCCCc
Q psy14038 82 CASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAY-YASFGYQVTS 124 (131)
Q Consensus 82 ~gty~~~~~~~l~ylk~LGvt~VeLmPv~e~~~-~~~WGY~~~~ 124 (131)
+-+...+.+. +..+.++|+++|-|-||-+..+ .++=.|++-+
T Consensus 47 r~s~d~l~~~-~~~~~~~Gi~~v~LFgv~~~Kd~~gs~A~~~~g 89 (314)
T cd00384 47 RLSVDSLVEE-AEELADLGIRAVILFGIPEHKDEIGSEAYDPDG 89 (314)
T ss_pred eeCHHHHHHH-HHHHHHCCCCEEEEECCCCCCCCCcccccCCCC
Confidence 4466777776 9999999999999999965432 2344455543
No 149
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=20.68 E-value=2.2e+02 Score=22.78 Aligned_cols=41 Identities=7% Similarity=0.058 Sum_probs=26.4
Q ss_pred eEEEeeccc-cccCCCccCHHHHHhhhhHHHHHcC-----CcEEEeccce
Q psy14038 67 KIYESHVGI-CTQEQKCASYEDFVRVVIPRIVKQG-----YNAVQLMAIM 110 (131)
Q Consensus 67 iIYE~Hv~~-~~~~~~~gty~~~~~~~l~ylk~LG-----vt~VeLmPv~ 110 (131)
.|.|+-.|+ ++..+.. +-.+- -+++..|.++| |..||+ |.+
T Consensus 2 ~i~d~tlRDG~Q~~~~~-~~~~K-v~i~~~L~~~G~~~~~v~~IE~-~s~ 48 (279)
T cd07947 2 WITDTTFRDGQQARPPY-TVEQI-VKIYDYLHELGGGSGVIRQTEF-FLY 48 (279)
T ss_pred EEEeCCCCCcCCCCCCC-CHHHH-HHHHHHHHHcCCCCCccceEEe-cCc
Confidence 577887886 4433322 33322 23689999999 999998 544
No 150
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=20.45 E-value=89 Score=24.14 Aligned_cols=17 Identities=18% Similarity=0.485 Sum_probs=15.1
Q ss_pred hhHHHHHcCCcEEEecc
Q psy14038 92 VIPRIVKQGYNAVQLMA 108 (131)
Q Consensus 92 ~l~ylk~LGvt~VeLmP 108 (131)
.+..++++|+..|||..
T Consensus 15 ~l~~a~~~G~d~vEl~~ 31 (279)
T cd00019 15 ALKRAKEIGFDTVAMFL 31 (279)
T ss_pred HHHHHHHcCCCEEEEEc
Confidence 49999999999999864
No 151
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=20.18 E-value=1.1e+02 Score=20.44 Aligned_cols=23 Identities=13% Similarity=0.184 Sum_probs=19.2
Q ss_pred hhHHHHHcCCcEEEeccceecCC
Q psy14038 92 VIPRIVKQGYNAVQLMAIMEHAY 114 (131)
Q Consensus 92 ~l~ylk~LGvt~VeLmPv~e~~~ 114 (131)
.|..+++.|++.|-++|.+=++.
T Consensus 50 ~l~~l~~~g~~~i~vvP~fL~~G 72 (117)
T cd03414 50 ALERLRALGARRVVVLPYLLFTG 72 (117)
T ss_pred HHHHHHHcCCCEEEEEechhcCC
Confidence 47778889999999999986653
No 152
>CHL00041 rps11 ribosomal protein S11
Probab=20.10 E-value=1.2e+02 Score=21.18 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=17.5
Q ss_pred HHHhhhhHHHHHcCCcEEEec
Q psy14038 87 DFVRVVIPRIVKQGYNAVQLM 107 (131)
Q Consensus 87 ~~~~~~l~ylk~LGvt~VeLm 107 (131)
.+++++...++++|++.|+++
T Consensus 60 ~~a~~~~~~~~~~gi~~v~I~ 80 (116)
T CHL00041 60 TAAENAIRTVIDQGMKRAEVM 80 (116)
T ss_pred HHHHHHHHHHHHcCCcEEEEE
Confidence 356788999999999998874
No 153
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=20.08 E-value=1.2e+02 Score=23.15 Aligned_cols=26 Identities=8% Similarity=0.286 Sum_probs=21.0
Q ss_pred HHHhhhhHHHHHcCCcEEEeccceec
Q psy14038 87 DFVRVVIPRIVKQGYNAVQLMAIMEH 112 (131)
Q Consensus 87 ~~~~~~l~ylk~LGvt~VeLmPv~e~ 112 (131)
+-.+++...++++|+..++|+|-+..
T Consensus 145 e~i~~ia~~l~~l~~~~~~llpyh~~ 170 (213)
T PRK10076 145 ENMQQALDVLIPLGIKQIHLLPFHQY 170 (213)
T ss_pred HHHHHHHHHHHHcCCceEEEecCCcc
Confidence 33556688899999999999998864
Done!