RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14038
(131 letters)
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE;
1.70A {Oryza sativa japonica group} PDB: 3amk_A
Length = 755
Score = 152 bits (387), Expect = 2e-44
Identities = 51/113 (45%), Positives = 71/113 (62%), Gaps = 1/113 (0%)
Query: 20 ILRLSPWATYVTEPP-VVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQ 78
+ R+ W Y T G Y+ W+P +++ + +P KPD +IYE+HVG+ +
Sbjct: 134 VDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGE 193
Query: 79 EQKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131
E + ++Y +F V+PRI YN VQLMAIMEH+YYASFGY VT+FFA SSR
Sbjct: 194 EPEVSTYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVSSR 246
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis
H37RV, mesophilic human pathogen, RV1326C gene, glycosyl
transferase; 2.33A {Mycobacterium tuberculosis}
Length = 722
Score = 68.0 bits (167), Expect = 1e-14
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 13/112 (11%)
Query: 25 PWATYVTEPP-----VVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQE 79
P+A PP V Y W + + + + YE H+G
Sbjct: 205 PFAFGTEVPPQTASRVTSSDYT---WGDDDWMAGRALRNPVNEA--MSTYEVHLG---SW 256
Query: 80 QKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131
+ SY R + IV QG+ V+L+ + EH + S+GYQVTS++A +SR
Sbjct: 257 RPGLSYRQLARELTDYIVDQGFTHVELLPVAEHPFAGSWGYQVTSYYAPTSR 308
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta
sandwich, transferase; 2.30A {Escherichia coli} SCOP:
b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Length = 617
Score = 66.8 bits (164), Expect = 3e-14
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 14/114 (12%)
Query: 25 PWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLK----IYESHVG---ICT 77
P+A P A I + + + KK + IYE H+G T
Sbjct: 94 PYAFEAQMRP--ETA--SLICGL---PEKVVQTEERKKANQFDAPISIYEVHLGSWRRHT 146
Query: 78 QEQKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131
SY + ++P G+ ++L+ I EH + S+GYQ T +A + R
Sbjct: 147 DNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRR 200
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel,
alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus
solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A*
3vgh_A* 3vgg_A* 1eha_A
Length = 558
Score = 63.4 bits (155), Expect = 4e-13
Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 22/112 (19%)
Query: 25 PWATYVTEPP-----VVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQE 79
P + Y E ++ + E + + + + L IYE HVG T E
Sbjct: 69 PASRYQPEGVHGPSQIIQESKE---F----NN-ETFLKKED-----LIIYEIHVGTFTPE 115
Query: 80 QKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131
++E +R + + G A+++M I + +GY +A +
Sbjct: 116 ---GTFEGVIRK-LDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNS 163
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics,
center for structural genomics of infectious diseases,
unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella
enterica subsp}
Length = 618
Score = 58.1 bits (141), Expect = 3e-11
Identities = 18/111 (16%), Positives = 40/111 (36%), Gaps = 17/111 (15%)
Query: 25 PWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSS----KPKKPDNLKIYESHVGICTQEQ 80
P + + V G + + +P + W ++ + +YE H G T E
Sbjct: 101 PASRA-QKTDVNGPS---YVVDP---GSYTWRNTGWKGSRWEQ--AVVYEMHTGTFTPE- 150
Query: 81 KCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131
++ +P + + G +++M + + +GY +A S
Sbjct: 151 --GTFRA-AIAKLPYLAELGVTVIEVMPVAQFGGERGWGYDGVLLYAPHSA 198
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase,
protein-carbohydrate complex, desiccation resistance;
HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP:
b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A*
2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Length = 602
Score = 56.9 bits (138), Expect = 9e-11
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 13/93 (13%)
Query: 43 RIWNPKPQDKHKWTSS----KPKKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVK 98
+ + WT + YE HVG T E +Y +P + +
Sbjct: 105 EVVDF---GTFDWTDADWHGIKLAD--CVFYEVHVGTFTPE---GTYRA-AAEKLPYLKE 155
Query: 99 QGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131
G A+Q+M + +GY +F+A +
Sbjct: 156 LGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAP 188
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.009
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 16/91 (17%)
Query: 41 EQRIWNPKPQDKHKWTSSKPKKPD--NLKIYESHVGIC----TQEQKCASYEDFVRVVIP 94
EQ+I + D W +S LK Y+ + IC E+ + DF+ +
Sbjct: 504 EQKIRH----DSTAWNASGSILNTLQQLKFYKPY--ICDNDPKYERLVNAILDFLPKIEE 557
Query: 95 RIVKQGY-NAVQLMAIM--EHAYYASFGYQV 122
++ Y + +++ A+M + A + QV
Sbjct: 558 NLICSKYTDLLRI-ALMAEDEAIFEEAHKQV 587
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase,
glycosidase, ISO-amylase glycosyl hydrolase, glycogen
metabolism; 2.25A {Escherichia coli k-12}
Length = 657
Score = 32.6 bits (75), Expect = 0.023
Identities = 25/141 (17%), Positives = 43/141 (30%), Gaps = 37/141 (26%)
Query: 25 PWATYVTEPPVVGHAYEQRIWNPKPQDKHK-------------WTSSK-PKKP-DNLKIY 69
P A + P +D W P+ P + IY
Sbjct: 95 PCARQIDGEFKDNPLLHAGHNEPDYRDNAAIAPKCVVVVDHYDWEDDAPPRTPWGSTIIY 154
Query: 70 ESHVGICTQ------EQKCASYEDFVR-VVIPRIVKQGYNAVQLMAIMEHA--------- 113
E+HV T + +Y+ V+I + + G A++L+ + + A
Sbjct: 155 EAHVKGLTYLHPEIPVEIRGTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMG 214
Query: 114 ---YYASFGYQVTSFFAASSR 131
Y+ GY + FA
Sbjct: 215 LSNYW---GYNPVAMFALHPA 232
>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A
{Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1
c.1.8.1
Length = 750
Score = 32.3 bits (74), Expect = 0.030
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 20/92 (21%)
Query: 55 WTSSKPKKP-DNLKIYESHVGICTQ------EQKCASYEDFVRVVIPRIVKQGYNAVQLM 107
T +KP + + IYE HV T+ Q +Y + G AV+ +
Sbjct: 167 STGTKPTRAQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLK-ASYLASLGVTAVEFL 225
Query: 108 AIMEHA---YYASF---------GYQVTSFFA 127
+ E GY ++F+
Sbjct: 226 PVQETQNDANDVVPNSDANQNYWGYMTENYFS 257
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl
hydrolase, glycogen debraching; HET: GLC A16; 2.8A
{Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A
Length = 718
Score = 32.3 bits (74), Expect = 0.031
Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 17/108 (15%)
Query: 37 GHAYEQRIWNPKPQDKHKWTSSKPKKP-DNLKIYESHVGICTQ------EQKCASYEDFV 89
+ + + NP + + K P + IYE HV T+ E +YE
Sbjct: 144 EYVPKSVVINPYFEWDDEDFIKGKKVPLKDTVIYEVHVKGFTKLRLDLPENIRGTYEGLA 203
Query: 90 -RVVIPRIVKQGYNAVQLMAIMEHAYYASF---------GYQVTSFFA 127
+I + G V+LM + GY +FF+
Sbjct: 204 SEQMISYLKDLGITTVELMPVFHFIDQRFLTDKGLTNYWGYDPINFFS 251
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.034
Identities = 27/159 (16%), Positives = 43/159 (27%), Gaps = 51/159 (32%)
Query: 9 SILFYSVL-----FYSI-------------LRLSPWATYVTEPPVVG------------- 37
S LF +V +I LR Y T +VG
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEELR----DLYQTYHVLVGDLIKFSAETLSEL 198
Query: 38 --HAYEQRIWNPKPQDKHKWTSSKPKKPDN---LKIYESHVGIC-TQEQKCASYEDFVRV 91
+ + + +W + PD L I S I Q A Y ++
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ---LAHYVVTAKL 255
Query: 92 VIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASS 130
G+ +L + ++ A S G A +
Sbjct: 256 -------LGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel,
alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB:
2e8z_A* 2e9b_A*
Length = 718
Score = 29.6 bits (67), Expect = 0.24
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 35/107 (32%)
Query: 51 DKHKWTSSKP--KKPDNLKIYESHV------------------GICTQEQKCASYEDFVR 90
D+ KWT+ P + IYE+H+ + + +
Sbjct: 198 DQMKWTAPLKPFSHPVDAVIYETHLRDFSIHENSGMINKGKYLALT---ETDTQTANGSS 254
Query: 91 VVIPRIVKQGYNAVQLMAIMEHA----------YYASFGYQVTSFFA 127
+ + + G V+L+ + + A Y +GY FFA
Sbjct: 255 SGLAYVKELGVTHVELLPVNDFAGVDEEKPLDAYN--WGYNPLHFFA 299
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide,
amylase, starch, carbohydrate; 1.65A {Bacillus
acidopullulyticus}
Length = 921
Score = 29.4 bits (66), Expect = 0.38
Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 26/104 (25%)
Query: 48 KPQDKHKWTSSKPKKPDNLKIYESHV---------GICTQ------EQKCASYEDFVRVV 92
P P P + IYE+HV G+ + + D V+
Sbjct: 415 DPAGWQGDHEQTPANPVDEVIYEAHVRDFSIDANSGMKNKGKYLAFTEHGTKGPDHVKTG 474
Query: 93 IPRIVKQGYNAVQLMAIMEHA---------YYASFGYQVTSFFA 127
I + + G VQL + E Y +GY ++
Sbjct: 475 IDSLKELGITTVQLQPVEEFNSIDETQPDTYN--WGYDPRNYNV 516
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif,
hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus
subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Length = 422
Score = 28.6 bits (64), Expect = 0.61
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 9/48 (18%)
Query: 93 IPRIVKQGYNAVQLMAIMEH---------AYYASFGYQVTSFFAASSR 131
+ I GY A+Q I + + YQ TS+ +
Sbjct: 23 MKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRY 70
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Length = 1014
Score = 27.5 bits (61), Expect = 1.4
Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 14/104 (13%)
Query: 23 LSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLK---IYESHV------ 73
L+ W + ++ + +P T K + IYE+HV
Sbjct: 413 LAAWNSDDSKIDDAHKVAKAAFVDPAKLGPQDLTYGKIHNFKTREDAVIYEAHVRDFTSD 472
Query: 74 ---GICTQEQKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAY 114
+ ++E F+ + + G +QL+ ++ + +
Sbjct: 473 PAIAKDLTKPF-GTFEAFIEK-LDYLKDLGVTHIQLLPVLSYYF 514
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Length = 714
Score = 27.0 bits (60), Expect = 2.0
Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 14/104 (13%)
Query: 23 LSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLK---IYESHV------ 73
L+ W + ++ + +P T K + IYE+HV
Sbjct: 106 LAAWNSDDSKIDDAHKVAKAAFVDPAKLGPQDLTYGKIHNFKTREDAVIYEAHVRDFTSD 165
Query: 74 ---GICTQEQKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAY 114
+ ++E F+ + + G +QL+ ++ + +
Sbjct: 166 PAIAKDLTKPF-GTFEAFIEK-LDYLKDLGVTHIQLLPVLSYYF 207
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 25.9 bits (58), Expect = 3.8
Identities = 5/37 (13%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 89 VRVVIPRIVKQGYNAVQLMA-----IMEHAYYASFGY 120
V+ V + + G++ V ++ ++ + G+
Sbjct: 102 VQSVGTNLKESGFHGVLVVISNPVDVITALFQHVTGF 138
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule,
tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus
norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E*
1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E*
3hke_E* 3n2g_E* 3n2k_E*
Length = 143
Score = 25.8 bits (56), Expect = 4.0
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 37 GHAYEQRIWNPKPQDKHKWTSSKPKKPD 64
G ++E + P ++ +S P++ D
Sbjct: 15 GQSWEVILKPPSFDGVPEFNASLPRRRD 42
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose
synthase, ADP-glucose pyrophosphorylase, agpase B; HET:
PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6
PDB: 1yp3_A* 1yp4_A*
Length = 451
Score = 25.3 bits (56), Expect = 7.1
Identities = 7/24 (29%), Positives = 7/24 (29%)
Query: 79 EQKCASYEDFVRVVIPRIVKQGYN 102
K DF VIP G
Sbjct: 245 RDKFPGANDFGSEVIPGATSLGMR 268
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase;
HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis}
SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A*
1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Length = 448
Score = 25.1 bits (54), Expect = 9.6
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 7/38 (18%)
Query: 96 IVKQGYNAVQLMAIME-------HAYYASFGYQVTSFF 126
+ +GY AVQ+ E Y Y++ S
Sbjct: 24 LGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRG 61
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.136 0.429
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,015,283
Number of extensions: 102568
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 26
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (23.8 bits)