RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14038
(131 letters)
>d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme,
central domain {Escherichia coli [TaxId: 562]}
Length = 396
Score = 62.3 bits (150), Expect = 5e-13
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 50 QDKHKWTSSKPKKPDNLKIYESHVGICTQ---EQKCASYEDFVRVVIPRIVKQGYNAVQL 106
Q + + +++ P + IYE H+G + SY + ++P G+ ++L
Sbjct: 3 QTEERKKANQFDAP--ISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLEL 60
Query: 107 MAIMEHAYYASFGYQVTSFFAASSR 131
+ I EH + S+GYQ T +A + R
Sbjct: 61 LPINEHPFDGSWGYQPTGLYAPTRR 85
>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase,
central domain {Archaeon Sulfolobus solfataricus, km1
[TaxId: 2287]}
Length = 400
Score = 54.7 bits (130), Expect = 2e-10
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 55 WTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGYNAVQLMAIMEHAY 114
+ + K ++L IYE HVG T E ++E +R + + G A+++M I +
Sbjct: 1 FNNETFLKKEDLIIYEIHVGTFTPE---GTFEGVIRK-LDYLKDLGITAIEIMPIAQFPG 56
Query: 115 YASFGYQVTSFFAASSR 131
+GY +A +
Sbjct: 57 KRDWGYDGVYLYAVQNS 73
>d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase,
central domain {Deinococcus radiodurans [TaxId: 1299]}
Length = 420
Score = 50.5 bits (119), Expect = 6e-09
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 54 KWTSSKPKKP--DNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGYNAVQLMAIME 111
WT + + YE HVG T E +Y +P + + G A+Q+M +
Sbjct: 3 DWTDADWHGIKLADCVFYEVHVGTFTPE---GTYRAAAEK-LPYLKELGVTAIQVMPLAA 58
Query: 112 HAYYASFGYQVTSFFAASSR 131
+GY +F+A +
Sbjct: 59 FDGQRGWGYDGAAFYAPYAP 78
>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas
amyloderamosa [TaxId: 32043]}
Length = 475
Score = 36.6 bits (83), Expect = 4e-04
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 18/94 (19%)
Query: 56 TSSKPKKP-DNLKIYESHVGICTQEQKCASYE---DF--VRVVIPRIVKQGYNAVQLMAI 109
T +KP + + IYE HV T++ + + + + G AV+ + +
Sbjct: 6 TGTKPTRAQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKASYLASLGVTAVEFLPV 65
Query: 110 MEHAYYAS------------FGYQVTSFFAASSR 131
E A+ +GY ++F+ R
Sbjct: 66 QETQNDANDVVPNSDANQNYWGYMTENYFSPDRR 99
>d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea
[TaxId: 489]}
Length = 554
Score = 35.3 bits (80), Expect = 0.001
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 93 IPRIVKQGYNAVQLMAIMEHAYYAS-FGYQVTSFFAASSR 131
IP + G + LM + + S GY V+S+ +
Sbjct: 119 IPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPA 158
>d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus
subtilis [TaxId: 1423]}
Length = 344
Score = 33.0 bits (74), Expect = 0.006
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 9/48 (18%)
Query: 93 IPRIVKQGYNAVQLMAIMEH---------AYYASFGYQVTSFFAASSR 131
+ I GY A+Q I + + YQ TS+ +
Sbjct: 23 MKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRY 70
>d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm
(Tenebrio molitor), larva [TaxId: 7067]}
Length = 378
Score = 33.0 bits (74), Expect = 0.007
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 84 SYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYAS----FGYQVTSFFAAS 129
+ D + QG+ VQ+ E+ YQ S+ +
Sbjct: 20 KWNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSYIINT 69
>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase
{Pseudoalteromonas haloplanktis (Alteromonas
haloplanktis) [TaxId: 228]}
Length = 354
Score = 32.5 bits (73), Expect = 0.009
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 84 SYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYAS--FGYQVTSF 125
+++D + + +GY AVQ+ EH + YQ S+
Sbjct: 12 NWQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSY 55
>d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp.,
ksm-k38 [TaxId: 1409]}
Length = 390
Score = 32.4 bits (72), Expect = 0.011
Identities = 5/35 (14%), Positives = 10/35 (28%)
Query: 93 IPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFA 127
+ G A+ + + A GY +
Sbjct: 29 AAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYD 63
>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
{Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 653
Score = 32.6 bits (74), Expect = 0.011
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 93 IPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFA 127
+ G + + L ++ + ++ GY V
Sbjct: 23 LWYFKDLGVSHLYLSPVLMASPGSNHGYDVIDHSR 57
>d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera
(Bacillus amyloliquefaciens) and (Bacillus
licheniformis) [TaxId: 1390]}
Length = 393
Score = 32.2 bits (72), Expect = 0.013
Identities = 5/38 (13%), Positives = 10/38 (26%)
Query: 93 IPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASS 130
+ G AV + + + GY +
Sbjct: 27 AEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGE 64
>d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 403
Score = 32.2 bits (72), Expect = 0.014
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 84 SYEDFVRVVIPRIVKQGYNAVQLMAIMEHAYYAS------FGYQVTSF 125
+ D + +G+ VQ+ E+ + YQ S+
Sbjct: 20 RWVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSY 67
>d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga
maritima [TaxId: 2336]}
Length = 391
Score = 31.9 bits (71), Expect = 0.018
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 93 IPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131
+ + + G + V LM + + GY V F++ +
Sbjct: 29 VSYLKELGIDFVWLMPVFSSISF--HGYDVVDFYSFKAE 65
>d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella
sp., lx3 [TaxId: 576]}
Length = 478
Score = 31.5 bits (70), Expect = 0.025
Identities = 4/39 (10%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 93 IPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131
+ + G +A+ + + GY ++++
Sbjct: 37 LDYLKSLGIDAIWINPHYDSP-NTDNGYDISNYRQIMKE 74
>d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 393
Score = 31.1 bits (69), Expect = 0.032
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 93 IPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFA 127
+ G A+ L + + GY V +
Sbjct: 30 ANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYD 64
>d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum
vulgare), AMY1 isozyme [TaxId: 4513]}
Length = 347
Score = 30.3 bits (67), Expect = 0.049
Identities = 6/35 (17%), Positives = 8/35 (22%), Gaps = 2/35 (5%)
Query: 93 IPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFA 127
+ I G V L GY +
Sbjct: 27 VDDIAAAGVTHVWLPPPSHSVSNE--GYMPGRLYD 59
>d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain
{Flavobacterium sp. 92 [TaxId: 197856]}
Length = 422
Score = 30.5 bits (67), Expect = 0.051
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 93 IPRIVKQGYNAVQLMAIMEH--AYYASFGYQVTSFFA 127
+ I G+ + ++E+ A Y+ GY T +
Sbjct: 59 LDYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYR 95
>d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707
[TaxId: 1416]}
Length = 394
Score = 30.3 bits (67), Expect = 0.052
Identities = 6/38 (15%), Positives = 11/38 (28%)
Query: 93 IPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASS 130
+ +G AV + + A GY +
Sbjct: 27 ASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGE 64
>d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix
orenii [TaxId: 31909]}
Length = 409
Score = 30.0 bits (66), Expect = 0.072
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 88 FVRVVIPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131
I G N + LM I + Y GY VT ++ +
Sbjct: 36 LNDGDPETIADLGVNGIWLMPIFKSPSY--HGYDVTDYYKINPD 77
>d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus
[TaxId: 1396]}
Length = 479
Score = 30.0 bits (66), Expect = 0.083
Identities = 5/39 (12%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 93 IPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131
+ + + G + + L + E GY ++ + +
Sbjct: 37 LDYLKELGIDVIWLSPVYESP-NDDNGYDISDYCKIMNE 74
>d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon
Pyrococcus woesei [TaxId: 2262]}
Length = 361
Score = 29.5 bits (65), Expect = 0.12
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 93 IPRIVKQGYNAVQLMAIMEHAY-YASFGYQVTSFFA 127
IP + G +A+ L + S GY +F
Sbjct: 34 IPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFD 69
>d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 382
Score = 28.9 bits (63), Expect = 0.19
Identities = 6/39 (15%), Positives = 10/39 (25%), Gaps = 2/39 (5%)
Query: 93 IPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 131
+ +V G + L I Y +F
Sbjct: 59 LDYLVDLGITGIYLTPIFRSPSN--HKYDTADYFEVDPH 95
>d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima
[TaxId: 2336]}
Length = 572
Score = 28.5 bits (62), Expect = 0.23
Identities = 19/131 (14%), Positives = 38/131 (29%), Gaps = 30/131 (22%)
Query: 21 LRLSPWATYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLK---IYESHV--- 73
+ P+ ++ + E P K PD +K +Y S
Sbjct: 41 CFVDPYELGAEITDWILNQSREWDYSQPL------SFLKGEKTPDWIKRSVVYGSLPRTT 94
Query: 74 --------GICTQEQKCASYE--DF--VRVVIPRIVKQGYNAVQLMAIMEHAY-----YA 116
G + E F + +++P + G +A+ L+ + + A
Sbjct: 95 AAYNHKGSGYYEENDVLGFREAGTFFKMMLLLPFVKSLGADAIYLLPVSRMSDLFKKGDA 154
Query: 117 SFGYQVTSFFA 127
Y V +
Sbjct: 155 PSPYSVKNPME 165
>d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger,
acid amylase [TaxId: 5061]}
Length = 381
Score = 26.9 bits (58), Expect = 0.83
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 6/41 (14%)
Query: 93 IPRIVKQGYNAVQLMAIMEHA------YYASFGYQVTSFFA 127
+ I G+ A+ + I E A GY +
Sbjct: 49 LDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYD 89
>d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae
[TaxId: 573]}
Length = 563
Score = 26.7 bits (57), Expect = 1.0
Identities = 9/83 (10%), Positives = 23/83 (27%), Gaps = 12/83 (14%)
Query: 51 DKHKWTSSKPKKPDNLKIYESHVGICTQ------EQKCASYEDFVRVV------IPRIVK 98
+ I+ESH+ + + Y + ++
Sbjct: 7 LTMPHAQKTKADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHLKQLSA 66
Query: 99 QGYNAVQLMAIMEHAYYASFGYQ 121
G ++L+ + + A F +
Sbjct: 67 SGVTHIELLPVFDLATVNEFSDK 89
>d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain
{Bacillus sp., cyclomaltodextrinase [TaxId: 1409]}
Length = 382
Score = 26.2 bits (56), Expect = 1.6
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 93 IPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFA 127
+ + K G NAV + + Y +F
Sbjct: 57 LDHLSKLGVNAVYFTPLFKATTN--HKYDTEDYFQ 89
>d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan
maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]}
Length = 357
Score = 25.6 bits (55), Expect = 2.4
Identities = 6/46 (13%), Positives = 10/46 (21%), Gaps = 8/46 (17%)
Query: 93 IPRIVKQGYNAVQLMAIMEHA--------YYASFGYQVTSFFAASS 130
I G++A+ + GY F
Sbjct: 43 AATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGR 88
>d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium
adolescentis [TaxId: 1680]}
Length = 434
Score = 25.5 bits (54), Expect = 2.7
Identities = 4/35 (11%), Positives = 9/35 (25%)
Query: 93 IPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFA 127
+ Y+ V ++ A G+
Sbjct: 26 LRTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTK 60
>d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain
{Thermoactinomyces vulgaris, TVAII [TaxId: 2026]}
Length = 382
Score = 25.4 bits (54), Expect = 2.9
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 93 IPRIVKQGYNAVQLMAIMEHAYYASFGYQVTSFFA 127
+P + + G A+ I + Y + A
Sbjct: 59 LPYLEELGVTALYFTPIFASPSH--HKYDTADYLA 91
>d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus
oryzae, Taka-amylase [TaxId: 5062]}
Length = 381
Score = 25.0 bits (53), Expect = 3.8
Identities = 6/41 (14%), Positives = 13/41 (31%), Gaps = 6/41 (14%)
Query: 93 IPRIVKQGYNAVQLMAIMEH------AYYASFGYQVTSFFA 127
+ I G+ A+ + + A GY ++
Sbjct: 49 LDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYS 89
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal
domain {Ureaplasma urealyticum [TaxId: 2130]}
Length = 139
Score = 24.3 bits (52), Expect = 4.7
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 12 FYSVLFYSILRLSPWATYVTE 32
F F I +L +A +T+
Sbjct: 118 FKGEPFGPIAKLFTYADKITK 138
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 23.9 bits (51), Expect = 6.9
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 12 FYSVLFYSILRLSPWATYVTE 32
F F +IL L P A V +
Sbjct: 111 FQRKPFGAILNLVPLAESVVK 131
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose
fungus (Colletotrichum lindemuthianum) [TaxId: 290576]}
Length = 220
Score = 23.7 bits (50), Expect = 8.1
Identities = 9/119 (7%), Positives = 36/119 (30%), Gaps = 3/119 (2%)
Query: 2 LYFILFYSILFYSVLFYSILRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPK 61
I ++ + + S ++ + + + + ++ K
Sbjct: 102 TRRIDGFAPKYMRAPYLSCDAGCQGDLGGLGYHIIDTNLDTKDYENNKPETTHLSAEKFN 161
Query: 62 KPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGYNAV---QLMAIMEHAYYAS 117
+ + + + + + + + +I + +GY AV + + +Y +
Sbjct: 162 NELSADVGANSYIVLSHDVHEQTVVSLTQKLIDTLKSKGYRAVTVGECLGDAPENWYKA 220
>d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase
{Bacillus stearothermophilus, maltogenic alpha-amylase
[TaxId: 1422]}
Length = 407
Score = 23.9 bits (50), Expect = 8.7
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 7/42 (16%)
Query: 93 IPRIVKQGYNAVQLMAIMEHAYYAS-------FGYQVTSFFA 127
+P + + G + L ++++ + GY F
Sbjct: 58 LPYLKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQ 99
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal
domain {Clostridium acetobutylicum [TaxId: 1488]}
Length = 141
Score = 23.1 bits (49), Expect = 9.9
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 12 FYSVLFYSILRLSPWATYVTE 32
F F I L A +V +
Sbjct: 119 FRGKPFGPIPELMAIAEFVDK 139
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.136 0.429
Gapped
Lambda K H
0.267 0.0458 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 508,162
Number of extensions: 21453
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 39
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (22.9 bits)