BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14042
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 32 LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
LI+ + + S+ +V + ++RL P I+V NK DLAR+R VS ++ ++LA +
Sbjct: 101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 160
Query: 92 KVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
K IE S +HHN EL G + QIRL+R
Sbjct: 161 SCKHIETSAALHHNTRELFEGAVRQIRLRR 190
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 32 LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
LI+ + + S+ +V + ++RL P I+V NK DLAR+R VS ++ ++LA +
Sbjct: 90 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 149
Query: 92 KVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
K IE S +HHN EL G + QIRL+R
Sbjct: 150 SCKHIETSAALHHNTRELFEGAVRQIRLRR 179
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 32 LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
LI+ + + S+ +V + ++RL P I+V NK DLAR+R VS ++ ++LA +
Sbjct: 80 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 139
Query: 92 KVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
K IE S +HHN EL G + QIRL+R
Sbjct: 140 SCKHIETSAALHHNTRELFEGAVRQIRLRR 169
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%)
Query: 32 LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
LI+ + + S+ + + I+L P I+V NK DL R R VS + + A F
Sbjct: 116 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF 175
Query: 92 KVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
KFIE S + HNV EL GI+ Q+RL+R
Sbjct: 176 DCKFIETSAAVQHNVKELFEGIVRQVRLRR 205
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%)
Query: 32 LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
LI+ + + S+ + + I+L P I+V NK DL R R VS + + A F
Sbjct: 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF 144
Query: 92 KVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
KFIE S + HNV EL GI+ Q+RL+R
Sbjct: 145 DCKFIETSAAVQHNVKELFEGIVRQVRLRR 174
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%)
Query: 32 LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
+I+ + K S+ + + ++L P I+V NK DL R+R VS + + A F
Sbjct: 82 VIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF 141
Query: 92 KVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122
KFIE S +HHNV L G++ QIRL+R
Sbjct: 142 DCKFIETSAALHHNVQALFEGVVRQIRLRRD 172
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%)
Query: 32 LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
LI+ + + S+ + + I+L P I+V NK DL R R VS + + A F
Sbjct: 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVF 144
Query: 92 KVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122
KFIE S + HNV EL GI+ Q+RL+R
Sbjct: 145 DCKFIETSAAVQHNVKELFEGIVRQVRLRRD 175
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%)
Query: 32 LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
+I+ + K S+ + + ++L P I+V NK DL R+R VS + + A F
Sbjct: 82 VIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF 141
Query: 92 KVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122
KFIE S +HHNV L G++ QIRL+R
Sbjct: 142 DCKFIETSAALHHNVQALFEGVVRQIRLRRD 172
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%)
Query: 32 LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
+I+ + K S+ + + ++L P I+V NK DL R+R VS + + A F
Sbjct: 77 VIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF 136
Query: 92 KVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
KFIE S +HHNV L G++ QIRL+R
Sbjct: 137 DCKFIETSAALHHNVQALFEGVVRQIRLRR 166
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%)
Query: 32 LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
LI+ + + S+ + + I+L P I+V NK DL R R VS + + A F
Sbjct: 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVF 144
Query: 92 KVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122
KFIE S + HNV EL GI+ Q+RL+R
Sbjct: 145 DXKFIETSAAVQHNVKELFEGIVRQVRLRRD 175
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 52 RLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLV 111
R H+ ++ P I+V NK DLAR R VS ++ + A F KFIE S + HNV EL
Sbjct: 105 RTHQADHV---PIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161
Query: 112 G 112
G
Sbjct: 162 G 162
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 40 KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVS 99
KP Y ++ +G + + P ++V NK D + +R V S +A+ LA ++K F+E S
Sbjct: 94 KPIYEQI------CEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETS 147
Query: 100 VGIHHNVDELLVGILN 115
++HNV EL +LN
Sbjct: 148 AKLNHNVKELFQELLN 163
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 48 QDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVD 107
+ ++R+ E+ + P ++V NK DL R VS ++AKN A + V ++E S NVD
Sbjct: 113 EQILRVKEDENV---PFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 169
Query: 108 ELLVGILNQIRLKR 121
++ ++ +IR ++
Sbjct: 170 KVFFDLMREIRARK 183
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 48 QDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVD 107
+ ++R+ E+ + P ++V NK DL R VS ++AKN A + V ++E S NVD
Sbjct: 101 EQILRVKEDENV---PFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 157
Query: 108 ELLVGILNQIRLKR 121
++ ++ +IR ++
Sbjct: 158 KVFFDLMREIRARK 171
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 48 QDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVD 107
+ ++R+ E+ + P ++V NK DL R VS ++AKN A + V ++E S NVD
Sbjct: 109 EQILRVKEDENV---PFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 165
Query: 108 ELLVGILNQIRLKR 121
++ ++ +IR ++
Sbjct: 166 KVFFDLMREIRARK 179
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 48 QDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVD 107
+ ++R+ E+ + P ++V NK DL R VS ++AKN A + V ++E S NVD
Sbjct: 101 EQILRVKEDENV---PFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 157
Query: 108 ELLVGILNQIRLKR 121
++ ++ +IR ++
Sbjct: 158 KVFFDLMREIRARK 171
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 3 QSLQGHSGKVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGY 58
+S+Q ++A IW+ E+Y ++TS+ G + ++Y + H ++V R +E
Sbjct: 45 RSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-- 102
Query: 59 LRTRPA-----IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
LR ++V NK DL RAV + +A+ A + FIE S NV+E I
Sbjct: 103 LRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162
Query: 114 LNQI 117
L +I
Sbjct: 163 LTEI 166
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 67/137 (48%), Gaps = 13/137 (9%)
Query: 3 QSLQGHSGKVRAI---IWN----EQYEKLTSS---DETGLIIVWMLY-KPSYHRVEQDVI 51
Q G SGK + +W+ E++ LT++ D G ++++ L + S+ V +
Sbjct: 58 QGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMS 117
Query: 52 RLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLV 111
+L Y +++ NK DL R V+ + A+ LA + + + E S NV++ +
Sbjct: 118 QLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVE 177
Query: 112 GILNQI--RLKRSLVQT 126
+L+ I R+++ + +T
Sbjct: 178 TLLDLIMKRMEKCVEKT 194
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 48 QDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVD 107
+ ++R+ E+ + P ++V NK DL R VS ++AKN A + V ++E S NVD
Sbjct: 99 EQILRVKEDENV---PFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVD 155
Query: 108 ELLVGILNQIRLK 120
++ ++ +IR +
Sbjct: 156 KVFFDLMREIRAR 168
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 7 GHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLY-KPSYHRVEQDVIRLHEEGY 58
G + KV +W+ E++ LT++ D G ++++ L + S+ V + +L Y
Sbjct: 79 GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 138
Query: 59 LRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI- 117
+++ NK DL R V+ + A+ LA + + + E S NV++ + +L+ I
Sbjct: 139 CENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM 198
Query: 118 -RLKRSLVQT 126
R+++ + +T
Sbjct: 199 KRMEQCVEKT 208
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 13/127 (10%)
Query: 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPS-YHRVEQDVIRLH 54
++++ + K++A IW+ E+Y +TS+ G +IV+ + K S Y + L
Sbjct: 50 RTIEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELR 109
Query: 55 EEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVD----ELL 110
E +I NK DLA RAV + +AKN A ++ F E S NVD EL+
Sbjct: 110 ENADDNVAVGLI-GNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELI 168
Query: 111 VGILNQI 117
V I +
Sbjct: 169 VAIFQMV 175
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 7 GHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLY-KPSYHRVEQDVIRLHEEGY 58
G + KV +W+ E++ LT++ D G ++++ L + S+ V + +L Y
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 124
Query: 59 LRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI- 117
+++ NK DL R V+ + A+ LA + + + E S NV++ + +L+ I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 118 -RLKRSLVQT 126
R+++ + +T
Sbjct: 185 KRMEKCVEKT 194
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 117 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 171
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 115 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 115 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 116 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 170
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 115 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DL +R V ++ A++LA S+ + FIE S VD+ ++ +IR
Sbjct: 128 PMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 182
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
P ++V NK DL R V ++A++ A + V+++E S NVD++ ++ +IR K+
Sbjct: 115 PLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKK 173
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 9/144 (6%)
Query: 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPS-YHRVEQDVIRLH 54
++L+ +++A IW+ E+Y +TS+ G +IV+ + K S Y + L
Sbjct: 53 RTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELR 112
Query: 55 EEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGIL 114
E +I NK DLA RAV ++++K A ++ F E S NVD+ ++
Sbjct: 113 ENADDNVAVGLI-GNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELI 171
Query: 115 NQIRLKRSLVQTGGAQAAAPWKSN 138
N I K S Q ++A +N
Sbjct: 172 NTIYQKVSKHQMDLGDSSANGNAN 195
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P I++ NK DL R V+ ++ + LA KV ++E S I NVD+ ++ IR
Sbjct: 112 PMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
P ++V NK DL R V ++A++ A + V+++E S NVD++ ++ +IR K+
Sbjct: 111 PLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKK 169
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKXDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKXDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DL +R V ++ A++LA S+ + FIE S VD+ ++ +IR
Sbjct: 111 PMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V N+ DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNRCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 3 QSLQGHSGKVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGY 58
+S+Q ++A IW+ E+Y +TS+ G + ++Y + H ++V R +E
Sbjct: 69 RSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-- 126
Query: 59 LRTRP-----AIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
LR ++V NK DL RAV + +A+ A + FIE S NV+ I
Sbjct: 127 LRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186
Query: 114 LNQI 117
L +I
Sbjct: 187 LTEI 190
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKSDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 3 QSLQGHSGKVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGY 58
+S+Q ++A IW+ E+Y +TS+ G + ++Y + H ++V R +E
Sbjct: 69 RSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-- 126
Query: 59 LRTRPA-----IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
LR ++V NK DL RAV + +A+ A + FIE S NV+ I
Sbjct: 127 LRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186
Query: 114 LNQI 117
L +I
Sbjct: 187 LTEI 190
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 3 QSLQGHSGKVRAI---IWN----EQYEKLTSS---DETGLIIVWMLY-KPSYHRVEQDVI 51
Q G SGK + +W+ E++ LT++ D G ++ + L + S+ V
Sbjct: 58 QGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXS 117
Query: 52 RLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLV 111
+L Y +++ NK DL R V+ + A+ LA + + + E S NV++ +
Sbjct: 118 QLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVE 177
Query: 112 GILNQI 117
+L+ I
Sbjct: 178 TLLDLI 183
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKSDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Query: 2 NQSLQGHSGKVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEG 57
+S+Q ++A IW+ E+Y +TS+ G + ++Y + H ++V R +E
Sbjct: 59 TRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE- 117
Query: 58 YLRTRP-----AIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVG 112
LR ++V NK DL RAV + +A+ A + FIE S NV+
Sbjct: 118 -LRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQT 176
Query: 113 ILNQI 117
IL +I
Sbjct: 177 ILTEI 181
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DL +R V ++ A++LA S+ + FIE S VD+ ++ +IR
Sbjct: 111 PMVLVGNKSDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DL +R V ++ A++LA S+ + FIE S VD+ ++ +IR
Sbjct: 111 PMVLVGNKSDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 7 GHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLY-KPSYHRVEQDVIRLHEEGY 58
G + KV +W+ E++ LT++ D G ++ + L + S+ V +L Y
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAY 124
Query: 59 LRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
+++ NK DL R V+ + A+ LA + + + E S NV++ + +L+ I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 9 SGKVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPA 64
+ V+A IW+ E+Y +TS+ G + +++ + H+ V R +E Y
Sbjct: 71 TAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT 130
Query: 65 IIV---ANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
I+V NK DL++AR V +++A+ A + + F+E S NV+ +L +I K
Sbjct: 131 IVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 190
Query: 122 S 122
S
Sbjct: 191 S 191
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA AR V S+ A++LA S+ + +IE S V++ ++ + R
Sbjct: 110 PMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREFR 164
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 9 SGKVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPA 64
+ V+A IW+ E+Y +TS+ G + +++ + H+ V R +E Y
Sbjct: 56 TAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT 115
Query: 65 IIV---ANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
I+V NK DL++AR V +++A+ A + + F+E S NV+ +L +I K
Sbjct: 116 IVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 175
Query: 122 S 122
S
Sbjct: 176 S 176
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DL +R V ++ A++LA S+ + FIE S VD+ ++ +IR
Sbjct: 111 PMVLVGNKSDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DLA R V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 110 PMVLVGNKCDLA-GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 3 QSLQGHSGKVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGY 58
+S+Q ++A IW+ E+Y +TS+ G + ++Y + H ++V R +E
Sbjct: 48 RSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-- 105
Query: 59 LRTRP-----AIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
LR ++V NK DL RAV + +A+ A + FIE S NV+ I
Sbjct: 106 LRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 165
Query: 114 LNQI 117
L +I
Sbjct: 166 LTEI 169
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 41 PSYHRVEQDVIRLH----EEGYLRTR-----------PAIIVA---NKIDLARARAVSSQ 82
P Y+R Q I ++ EE + R + P I++A NK DLA RAV Q
Sbjct: 74 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 133
Query: 83 DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
+A++ A + F+E S NV+E+ + I ++
Sbjct: 134 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 41 PSYHRVEQDVIRLH----EEGYLRTR-----------PAIIVA---NKIDLARARAVSSQ 82
P Y+R Q I ++ EE + R + P I++A NK DLA RAV Q
Sbjct: 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 83 DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
+A++ A + F+E S NV+E+ + I ++
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 41 PSYHRVEQDVIRLH----EEGYLRTR-----------PAIIVA---NKIDLARARAVSSQ 82
P Y+R Q I ++ EE + R + P I++A NK DLA RAV Q
Sbjct: 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 83 DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
+A++ A + F+E S NV+E+ + I ++
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 41 PSYHRVEQDVIRLH----EEGYLRTR-----------PAIIVA---NKIDLARARAVSSQ 82
P Y+R Q I ++ EE + R + P I++A NK DLA RAV Q
Sbjct: 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 83 DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
+A++ A + F+E S NV+E+ + I ++
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 41 PSYHRVEQDVIRLH----EEGYLRTR-----------PAIIVA---NKIDLARARAVSSQ 82
P Y+R Q I ++ EE + R + P I++A NK DLA RAV Q
Sbjct: 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 83 DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
+A++ A + F+E S NV+E+ + I ++
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 41 PSYHRVEQDVIRLH----EEGYLRTR-----------PAIIVA---NKIDLARARAVSSQ 82
P Y+R Q I ++ EE + R + P I++A NK DLA RAV Q
Sbjct: 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 83 DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
+A++ A + F+E S NV+E+ + I ++
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 41 PSYHRVEQDVIRLH----EEGYLRTR-----------PAIIVA---NKIDLARARAVSSQ 82
P Y+R Q I ++ EE + R + P I++A NK DLA RAV Q
Sbjct: 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 83 DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
+A++ A + F+E S NV+E+ + I ++
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 41 PSYHRVEQDVIRLH----EEGYLRTR-----------PAIIVA---NKIDLARARAVSSQ 82
P Y+R Q I ++ EE + R + P I++A NK DLA RAV Q
Sbjct: 72 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 131
Query: 83 DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
+A++ A + F+E S NV+E+ + I ++
Sbjct: 132 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 12 VRAIIWN----EQYEKLTSS---DETGLIIVW-MLYKPSYHRVEQDVIRLHEEGYLRTRP 63
V+ IW+ E++ +TSS G+IIV+ + + S+ V+Q + + +
Sbjct: 58 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYA-MENVN 116
Query: 64 AIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
++V NK DL R V+S + + LA S +KFIE S +NV++ + +I+
Sbjct: 117 KLLVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIK 171
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 3 QSLQGHSGKVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGY 58
+S+Q ++A IW+ E+Y +TS+ G + ++Y + H ++V R +E
Sbjct: 51 RSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 110
Query: 59 LRTRPAII---VANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILN 115
I+ V NK DL RAV + +A+ A + FIE S NV+ IL
Sbjct: 111 DHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 170
Query: 116 QI 117
+I
Sbjct: 171 EI 172
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 7 GHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLY-KPSYHRVEQDVIRLHEEGY 58
G ++ +W+ E++ LT++ D G ++++ L + S+ V + +L Y
Sbjct: 65 GRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY 124
Query: 59 LRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI- 117
++ NK DL RAV ++A+ LA + + + E S N+ + +L+ I
Sbjct: 125 SENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184
Query: 118 -RLKRSL 123
R++RS+
Sbjct: 185 KRMERSV 191
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 3 QSLQGHSGKVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGY 58
+S+Q ++A IW+ E+Y +TS+ G + ++Y + H ++V R +E
Sbjct: 45 RSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 104
Query: 59 LRTRPAII---VANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILN 115
I+ V NK DL RAV + +A+ A + FIE S NV+ IL
Sbjct: 105 DHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 164
Query: 116 QI 117
+I
Sbjct: 165 EI 166
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 18/95 (18%)
Query: 41 PSYHRVEQDVIRLH----EEGYLRTR-----------PAIIVA---NKIDLARARAVSSQ 82
P Y+R Q I ++ EE + R + P I++A NK DLA RAV Q
Sbjct: 74 PXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 133
Query: 83 DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
+A++ A + F E S NV+E+ I ++
Sbjct: 134 EAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
P ++V NK DL R V ++ A LA S+ + FIE S V++ ++ +IR R
Sbjct: 128 PMVLVGNKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYR 185
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 66/131 (50%), Gaps = 12/131 (9%)
Query: 2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVW-MLYKPSYHRVEQDVIRL 53
N+ L KV+ +W+ E++ +T + D L++++ + K S+ ++ + +
Sbjct: 50 NKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEI 109
Query: 54 HEEGYLRTRPAI-IVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVG 112
HE Y + A+ ++ NK+D A R V +D + LA + + F+E S NVD
Sbjct: 110 HE--YAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTA 167
Query: 113 ILNQIRLKRSL 123
I +++ +RS+
Sbjct: 168 IAKELK-RRSM 177
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 1 MNQSLQGHSGKVRAIIWN----EQYEKLTSSDETG---LIIVWMLYKPSYHRVEQDVIR- 52
M +++Q + + +IW+ E++ L G IIV+ + K ++ +R
Sbjct: 44 MTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE 103
Query: 53 LHEEGYLRTRPAIIVA---NKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDEL 109
L + G P+I+VA NK DL R V +DAK+ A S F+E S N++EL
Sbjct: 104 LRQHG----PPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININEL 159
Query: 110 LVGILNQI 117
+ I +I
Sbjct: 160 FIEISRRI 167
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 1 MNQSLQGHSGKVRAIIWN----EQYEKLTSSDETG---LIIVWMLYKPSYHRVEQDVIR- 52
M +++Q + + +IW+ E++ L G IIV+ + K ++ +R
Sbjct: 43 MTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE 102
Query: 53 LHEEGYLRTRPAIIVA---NKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDEL 109
L + G P+I+VA NK DL R V +DAK+ A S F+E S N++EL
Sbjct: 103 LRQHG----PPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININEL 158
Query: 110 LVGILNQI 117
+ I +I
Sbjct: 159 FIEISRRI 166
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 31 GLIIVWMLY-KPSYHRVE---QDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKN 86
G +IV+ + K S+ V+ Q ++R+ + + P I+VANK+DL R V+ K
Sbjct: 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDR---ESFPMILVANKVDLMHLRKVTRDQGKE 148
Query: 87 LAASFKVKFIEVSV-GIHHNVDELLVGILNQIR 118
+A + + +IE S NVD+ ++ IR
Sbjct: 149 MATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 31 GLIIVWMLY-KPSYHRVE---QDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKN 86
G +IV+ + K S+ V+ Q ++R+ + + P I+VANK+DL R V+ K
Sbjct: 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDR---ESFPMILVANKVDLMHLRKVTRDQGKE 148
Query: 87 LAASFKVKFIEVSV-GIHHNVDELLVGILNQIR 118
+A + + +IE S NVD+ ++ IR
Sbjct: 149 MATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 31 GLIIVWMLY-KPSYHRVE---QDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKN 86
G +IV+ + K S+ V+ Q ++R+ + + P I+VANK+DL R V+ K
Sbjct: 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDR---ESFPMILVANKVDLMHLRKVTRDQGKE 148
Query: 87 LAASFKVKFIEVSV-GIHHNVDELLVGILNQIR 118
+A + + +IE S NVD+ ++ IR
Sbjct: 149 MATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 1 MNQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRL 53
M ++++ + KV+ IW+ E++ +T S LI+ + + R + +R
Sbjct: 64 MIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLRE 123
Query: 54 HEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
E+ ++V NKIDLA R VS Q A+ + + + ++E S NV++L + +
Sbjct: 124 IEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 31 GLIIVWMLY-KPSYHRVE---QDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKN 86
G +IV+ + K S+ V+ Q ++R+ + + P I+VANK+DL R V+ K
Sbjct: 87 GFLIVYSVTDKASFEHVDRFHQLILRVKDR---ESFPMILVANKVDLMHLRKVTRDQGKE 143
Query: 87 LAASFKVKFIEVSV-GIHHNVDELLVGILNQIR 118
+A + + +IE S NVD+ ++ IR
Sbjct: 144 MATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 176
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 49 DVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGI 102
+++ LH + R+ PA+++ NK+D+A+ R V+ + LA F F EVS +
Sbjct: 115 ELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACL 168
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 1 MNQSLQGHSGKVRAIIWN----EQYEKLTSSDETG----LIIVWMLYKPSYHRVEQDVIR 52
+Q+L + V+ IW+ E+Y L G +I+ + + S+ R ++ V
Sbjct: 50 FSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQE 109
Query: 53 LHEEGYLRTRPAIIVA---NKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDEL 109
L +G P +++A NK DL AR V+++DA+ A + F+E S NV E+
Sbjct: 110 LQAQG----NPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEI 165
Query: 110 LVGILNQIRLKR 121
I RL R
Sbjct: 166 FYEIAR--RLPR 175
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 42 SYHRVEQDVIRLHEEGYLRTR-PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSV 100
S+ +E +LHE G+ +TR P ++V NK DL+ R V + + K LA S+ F+E S
Sbjct: 110 SFQVIESLYQKLHE-GHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSA 168
Query: 101 GIHHNVDELLVGILNQI 117
++L GI ++
Sbjct: 169 ----RENQLTQGIFTKV 181
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
P ++V NK DL R V +A AS V + E S + NVDE ++ +R
Sbjct: 116 PVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 171
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 3 QSLQGHSGKVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDV---IRLHE 55
++++ +++ IW+ E++ +T++ G + + ++Y + + ++ IR E
Sbjct: 48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE 107
Query: 56 EGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILN 115
E +I+ NK D+ R VS + + LA + +KF+E S + NV+ +
Sbjct: 108 EHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167
Query: 116 QIRLK 120
I+ K
Sbjct: 168 DIKAK 172
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 21/145 (14%)
Query: 5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVW-MLYKPSYHRVEQ---DVIRL 53
L G + K++ IW+ E++ +TSS G+I+V+ + + S++ V+Q ++ R
Sbjct: 60 LDGKTIKLQ--IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 117
Query: 54 HEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
E + ++V NK DL + V AK A S + F+E S NV++ + +
Sbjct: 118 ASENVNK----LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173
Query: 114 LNQIRLKRSLVQTGGAQAAAPWKSN 138
+I+ + GA A KSN
Sbjct: 174 AAEIKKRMG----PGATAGGAEKSN 194
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 10/124 (8%)
Query: 3 QSLQGHSGKV-RAIIWN----EQYEKLTSSDETGLIIVWMLY----KPSYHRVEQDVIRL 53
+S+Q + K+ +A IW+ E+Y +TS+ G + ++Y K S+ +E+ + L
Sbjct: 47 KSIQLKNNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKEL 106
Query: 54 HEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
+ ++V NK DL R ++ DA A K+ FIE S NV+ +
Sbjct: 107 RDNADSNI-VILLVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQL 165
Query: 114 LNQI 117
LN+I
Sbjct: 166 LNEI 169
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 12 VRAIIWN----EQYEKLTSS---DETGLIIVW-MLYKPSYHRVE---QDVIRLHEEGYLR 60
V+ IW+ E++ +TSS G+IIV+ + + S++ V+ Q++ R L+
Sbjct: 57 VKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK 116
Query: 61 TRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
++V NK DL R V AK A + K+ F+E S NV++ + + QI+
Sbjct: 117 ----LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK 170
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 3 QSLQGHSGKVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDV---IRLHE 55
++++ +++ IW+ E++ +T++ G + + ++Y + + ++ IR E
Sbjct: 46 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE 105
Query: 56 EGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILN 115
E +I+ NK D+ R VS + + LA + +KF+E S + NV+ +
Sbjct: 106 EHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 165
Query: 116 QIRLK 120
I+ K
Sbjct: 166 DIKAK 170
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 12 VRAIIWN----EQYEKLTSS---DETGLIIVW-MLYKPSYHRVE---QDVIRLHEEGYLR 60
V+ IW+ E++ +TSS G+IIV+ + + S++ V+ Q++ R L+
Sbjct: 57 VKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK 116
Query: 61 TRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
++V NK DL R V AK A + K+ F+E S NV++ + + QI+
Sbjct: 117 ----LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK 170
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 18/95 (18%)
Query: 41 PSYHRVEQDVIRLHE----EGYLRTR-----------PAIIVA---NKIDLARARAVSSQ 82
P Y+R Q I +++ + + R + P I++A NK DLA RAV Q
Sbjct: 72 PMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQ 131
Query: 83 DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
+A+ A + F+E S NV+E+ + I ++
Sbjct: 132 EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 56 EGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILN 115
+G + P ++V NK D + R V +++A+ +A +K F+E S +++NV EL +L
Sbjct: 109 KGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLT 167
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 18/95 (18%)
Query: 41 PSYHRVEQDVIRLHE----EGYLRTR-----------PAIIVA---NKIDLARARAVSSQ 82
P Y+R Q I +++ + + R + P I++A NK DLA RAV Q
Sbjct: 70 PMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQ 129
Query: 83 DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
+A+ A + F+E S NV+E+ + I ++
Sbjct: 130 EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 18/95 (18%)
Query: 41 PSYHRVEQDVIRLHE----EGYLRTR-----------PAIIVA---NKIDLARARAVSSQ 82
P Y+R Q I +++ + + R + P I++A NK DLA RAV Q
Sbjct: 72 PMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQ 131
Query: 83 DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
+A+ A + F+E S NV+E+ + I ++
Sbjct: 132 EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 8 HSGKVRAIIWN----EQYEKLTSSDETGLIIVWMLY----KPSYHRVEQDVIRLHEEGYL 59
H +++ IW+ E+Y +T++ G + ++Y + S+ V+ ++ +
Sbjct: 67 HDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD 126
Query: 60 RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
+ I+V NK DL R V ++D + LA +F E S + NV ++ +++ I
Sbjct: 127 NAQ-VILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 17/125 (13%)
Query: 5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVW-MLYKPSYHRVE---QDVIRL 53
L G + K++ IW+ E++ +TSS G+IIV+ + + S++ V+ Q++ R
Sbjct: 65 LDGKTVKLQ--IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY 122
Query: 54 HEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
L+ ++V NK DL R V AK A + K+ F+E S NV++ + +
Sbjct: 123 ATSTVLK----LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM 178
Query: 114 LNQIR 118
QI+
Sbjct: 179 ARQIK 183
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 18/95 (18%)
Query: 41 PSYHRVEQDVIRLHE----EGYLRTR-----------PAIIVA---NKIDLARARAVSSQ 82
P Y+R Q I +++ E + R + P+I++A NK DLA R V +
Sbjct: 75 PMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYE 134
Query: 83 DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
+A+ A + F+E S NV++L + I ++
Sbjct: 135 EAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 12 VRAIIWN----EQYEKLTSS---DETGLIIVWMLYKP-SYHRVEQDVIRLHEEGYLRTRP 63
VR +W+ E++ L S D T ++V+ + S+H+ + + + E R
Sbjct: 63 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTE---RGSD 119
Query: 64 AII--VANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELL 110
II V NK DL+ R VS+++ + A V FIE S +NV +L
Sbjct: 120 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAAS-FKVKFIEVSVGIHHNVDELLVGILNQI 117
P I+V NK DL R V + +NLA F+E S NV+E+ ++ QI
Sbjct: 110 PMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAAS-FKVKFIEVSVGIHHNVDELLVGILNQI 117
P I+V NK DL R V + +NLA F+E S NV+E+ ++ QI
Sbjct: 110 PMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 33 IIVWMLYK-PSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
+IV+ + K S++ +++ V L E G AI NK DL+ R V +DAK A S
Sbjct: 100 VIVYDITKQDSFYTLKKWVKELKEHGPENIVMAI-AGNKCDLSDIREVPLKDAKEYAESI 158
Query: 92 KVKFIEVSVGIHHNVDELLVGILNQI 117
+E S N++EL GI QI
Sbjct: 159 GAIVVETSAKNAINIEELFQGISRQI 184
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 31 GLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTR-----PAIIVANKIDLARARAVSSQDAK 85
G +V+ + S QD+ E LR + P I+V NK DL R V + +
Sbjct: 77 GFALVYSITAQSTFNDLQDL----REQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQ 132
Query: 86 NLAASF-KVKFIEVSVGIHHNVDELLVGILNQI 117
NLA + F+E S NV+E+ ++ QI
Sbjct: 133 NLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 31 GLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTR-----PAIIVANKIDLARARAVSSQDAK 85
G +V+ + S QD+ E LR + P I+V NK DL R V + +
Sbjct: 79 GFALVYSITAQSTFNDLQDL----REQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQ 134
Query: 86 NLAASF-KVKFIEVSVGIHHNVDELLVGILNQI 117
NLA + F+E S NV+E+ ++ QI
Sbjct: 135 NLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 65 IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELL 110
++V NK DLA R VS ++ + A V FIE S +NV +L
Sbjct: 125 MLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 170
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 65 IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELL 110
++V NK DLA R VS ++ + A V FIE S +NV +L
Sbjct: 122 MLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 167
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 17/130 (13%)
Query: 5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVW-MLYKPSYHRVEQ---DVIRL 53
L G + K++ IW+ E++ +TSS G+I+V+ + + SY V+Q ++ R
Sbjct: 53 LDGKTIKLQ--IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRY 110
Query: 54 HEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
E + ++V NK DL + V + AK A S + F+E S NV++ + +
Sbjct: 111 ASENVNK----LLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTM 166
Query: 114 LNQIRLKRSL 123
+I+ + L
Sbjct: 167 AAEIKKRMGL 176
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 17/125 (13%)
Query: 5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVW-MLYKPSYHRVEQ---DVIRL 53
L G + K++ IW+ E++ +TSS G+I+V+ + + SY V+Q ++ R
Sbjct: 53 LDGKTIKLQ--IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRY 110
Query: 54 HEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
E + ++V NK DL + V + AK A S + F+E S NV++ + +
Sbjct: 111 ASENVNK----LLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTM 166
Query: 114 LNQIR 118
+I+
Sbjct: 167 AAEIK 171
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 17/125 (13%)
Query: 5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVW-MLYKPSYHRVEQ---DVIRL 53
L G + K++ IW+ E++ +TSS G+I+V+ + + S++ V+Q ++ R
Sbjct: 60 LDGKTIKLQ--IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 117
Query: 54 HEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
E + ++V NK DL + V AK A S + F+E S NV++ + +
Sbjct: 118 ASENVNK----LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173
Query: 114 LNQIR 118
+I+
Sbjct: 174 AAEIK 178
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 17/125 (13%)
Query: 5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVW-MLYKPSYHRVEQ---DVIRL 53
L G + K++ IW+ E++ +TSS G+I+V+ + + S++ V+Q ++ R
Sbjct: 69 LDGKTIKLQ--IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 126
Query: 54 HEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
E + ++V NK DL + V AK A S + F+E S NV++ + +
Sbjct: 127 ASENVNK----LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 182
Query: 114 LNQIR 118
+I+
Sbjct: 183 AAEIK 187
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 65 IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELL 110
++V NK DLA R VS ++ + A V FIE S +NV +L
Sbjct: 115 MLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 33 IIVWMLYKP-SYHRVEQDVIRLHEEGYLRTRPAII--VANKIDLARA---RAVSSQDAKN 86
++V+ + KP S+ + V LHE+ ++ II V NKID + R V+ ++ +
Sbjct: 80 LVVYDVTKPQSFIKARHWVKELHEQA---SKDIIIALVGNKIDXLQEGGERKVAREEGEK 136
Query: 87 LAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120
LA + F E S NV+++ +GI +I LK
Sbjct: 137 LAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 65 IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELL 110
++V NK DLA R VS ++ + A V FIE S +NV +L
Sbjct: 115 MLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins
Into A 5.5 A Cryo-Em Map Of Triticum Aestivum
Translating 80s Ribosome
Length = 380
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 3 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 36
++LQGHSGKV ++ W + + S+ + G +IVW
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVW 93
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 17/125 (13%)
Query: 5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVW-MLYKPSYHRVEQ---DVIRL 53
L G + K++ IW+ E++ +TSS G+I+V+ + + S++ V+Q ++ R
Sbjct: 43 LDGKTIKLQ--IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 100
Query: 54 HEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
E + ++V NK DL + V AK A S + F+E S NV++ + +
Sbjct: 101 ASENVNK----LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 156
Query: 114 LNQIR 118
+I+
Sbjct: 157 AAEIK 161
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 17/125 (13%)
Query: 5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVW-MLYKPSYHRVEQ---DVIRL 53
L G + K++ IW+ E++ +TSS G+I+V+ + + S++ V+Q ++ R
Sbjct: 50 LDGKTIKLQ--IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 107
Query: 54 HEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
E + ++V NK DL + V AK A S + F+E S NV++ + +
Sbjct: 108 ASENVNK----LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 163
Query: 114 LNQIR 118
+I+
Sbjct: 164 AAEIK 168
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 17/125 (13%)
Query: 5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVW-MLYKPSYHRVEQ---DVIRL 53
L G + K++ IW+ E++ +TSS G+I+V+ + + S++ V+Q ++ R
Sbjct: 50 LDGKTIKLQ--IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 107
Query: 54 HEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
E + ++V NK DL + V AK A S + F+E S NV++ + +
Sbjct: 108 ASENVNK----LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 163
Query: 114 LNQIR 118
+I+
Sbjct: 164 AAEIK 168
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 65 IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
IV NKIDL + R VS Q+A++ A S K S + ++EL + + ++
Sbjct: 129 CIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 65 IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELL 110
++V NK DLA R VS ++ + A V FIE S +NV +L
Sbjct: 110 MLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 155
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 65 IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
IV NKIDL + R VS Q+A++ A S K S + ++EL + + ++
Sbjct: 115 CIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 65 IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
IV NKIDL + R VS Q+A++ A S K S + ++EL + + ++
Sbjct: 115 CIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
P I+V NK+DL R VSS + + LA + F+E S VDEL I+ Q+
Sbjct: 110 PVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 65 IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELL 110
++V NK DLA R ++ ++ + A V FIE S +NV +L
Sbjct: 111 MLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLF 156
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 17/115 (14%)
Query: 5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVW-MLYKPSYHRVEQ---DVIRL 53
L G + K++ IW+ E++ +TSS G+I+V+ + + S++ V+Q ++ R
Sbjct: 77 LDGKTIKLQ--IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 134
Query: 54 HEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDE 108
E + ++V NK DL + V AK A S + F+E S NV++
Sbjct: 135 ASENVNK----LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ 185
>pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From
Stenotrophomonas Maltophilia
Length = 741
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 165 TSMLGVQWTSDSQNLLFAIKGGQVHLYD 192
T ++ QW+ D+Q LLF + GG+++LYD
Sbjct: 109 TGIVDYQWSPDAQRLLFPL-GGELYLYD 135
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
Query: 3 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSY-HRVEQDVIRLHEEGYLRT 61
++L+GH KV + W + ++ SS + G +IVW + + H V + Y +
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 62 RPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHN 105
AI + ++ +N+AA K SV +H N
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKK------SVAMHTN 155
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 1 MNQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVW-MLYKPSYHRVE---QD 49
++++L G VR +W+ E++ L S D I+V+ + + S+ QD
Sbjct: 39 LSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQD 98
Query: 50 VIRLHEEGYLRTRPAII--VANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVD 107
+ L+E G + II V NK DL R V+ ++ A + F E S HN+
Sbjct: 99 I--LNERG----KDVIIALVGNKTDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIK 152
Query: 108 ELL 110
L
Sbjct: 153 VLF 155
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 65 IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLV 111
I++ NK DL R V+ ++AK A + F+E S NV++ +
Sbjct: 124 ILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 65 IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLV 111
I++ NK DL R V+ ++AK A + F+E S NV++ +
Sbjct: 139 ILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 185
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVS 99
P ++V NK DL R +S ++ K LA S+ F+E S
Sbjct: 113 PIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESS 149
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVS 99
P ++V NK DL R +S ++ K LA S+ F+E S
Sbjct: 113 PIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESS 149
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 17/125 (13%)
Query: 5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVW-MLYKPSYHRVEQ---DVIRL 53
L G + K++ IW+ E++ +TSS G+I+V+ + + S++ V+Q ++ R
Sbjct: 52 LDGKTIKLQ--IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 109
Query: 54 HEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
E + ++V K DL + V AK A S + F+E S NV++ + +
Sbjct: 110 ASENVNK----LLVGIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 165
Query: 114 LNQIR 118
+I+
Sbjct: 166 AAEIK 170
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVS 99
P ++V NK DL R +S ++ K LA S+ F+E S
Sbjct: 108 PIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESS 144
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVS 99
P ++V NK DL R +S ++ K LA S+ F+E S
Sbjct: 111 PIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESS 147
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 8 HSGKVRAIIWN----EQYEKLTSSDETGLIIVWMLY----KPSYHRVEQDVIRLHEEGYL 59
H +V+ IW+ E+Y +T++ G + ++Y + S++ V+ ++ +
Sbjct: 68 HEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD 127
Query: 60 RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVS----VGIHHNVDELLVGILN 115
+ I+V NK D+ R V ++ + LA F E S + + + L+ I +
Sbjct: 128 NAQ-VILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICD 186
Query: 116 QI 117
++
Sbjct: 187 KM 188
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 65 IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122
++V NK D R VSS+ + LA +F E S + NV + +++ I K S
Sbjct: 117 LLVGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXS 174
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 65 IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
++V NK D+ R VSS+ + LA +F E S + NV + +++ I
Sbjct: 114 LLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 11 KVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIR-LHE-EGYLRTRPA 64
KV+ IW+ E++ +TS+ G V ++Y + +V R LHE
Sbjct: 57 KVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCR 116
Query: 65 IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELL 110
I+V NK D + V ++DA A ++ E S + NV+E+
Sbjct: 117 ILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 65 IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLV----GILNQI 117
I+ NK DL R V+ +A A ++ F+E S NV+E V ILN+I
Sbjct: 119 ILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI 175
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 8 HSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRV 46
H+ KV + W+ +L + +IVW + KPS H +
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI 573
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 11 KVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDV---IRLHEEGYLRTRP 63
KV+ +W+ E++ +T++ G + + ++Y + R ++ + E
Sbjct: 68 KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ 127
Query: 64 AIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120
++V NK D+ R V++ + LA + FIE S NV+E+ + I+ K
Sbjct: 128 LLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 59 LRTRPAIIVANKIDLARARAVSSQD-AKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
++ RP I+V NKIDL + ++S + +N+ + + + +D L IL
Sbjct: 328 VKHRPLILVMNKIDLVEKQLITSLEYPENI-----TQIVHTAAAQKQGIDSLETAILE-- 380
Query: 118 RLKRSLVQTGGAQAA 132
+VQTG QAA
Sbjct: 381 -----IVQTGKVQAA 390
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 11 KVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDV---IRLHEEGYLRTRP 63
KV+ IW+ E++ +T++ G + + ++Y + R ++ + E
Sbjct: 51 KVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQ 110
Query: 64 AIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120
++V NK D+ R V++ + LA + FIE S NV+E+ + I+ K
Sbjct: 111 LLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 65 IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLV----GILNQI 117
I+ NK DL R V+ +A A ++ F+E S NV+E + ILN+I
Sbjct: 134 ILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 190
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 3 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLY 39
++L+GH K+ A+ W L S+ + G +I+W Y
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY 85
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With
Gdp Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G
Protein-Coupled Receptor Kinase 2 And Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And
Balanol (Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And
Balanol (Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta
Gamma In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex
With Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 3 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLY 39
++L+GH K+ A+ W L S+ + G +I+W Y
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY 85
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 3 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLY 39
++L+GH K+ A+ W L S+ + G +I+W Y
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY 96
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 11 KVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDV---IRLHEEGYLRTRP 63
KV+ +W+ E++ +T++ G + + ++Y + R ++ + E
Sbjct: 55 KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ 114
Query: 64 AIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120
++V NK D+ R V++ + LA + FIE S NV+E+ + I+ K
Sbjct: 115 LLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 170
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 65 IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
+++ NK DL R V ++ + A + F+E S NV+E + +I
Sbjct: 119 MLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 171
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 65 IIVANKIDLARARAVSSQDAKNLAASFKVKF-IEVSVGIHHNVDELLVGILNQIRLK 120
+++ NK DL+ R VS +A++LA + + IE S NV+E + + ++ ++
Sbjct: 138 LLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 3 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLY 39
++L+GH K+ A+ W L S+ + G +I+W Y
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY 85
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its
Phosphorylation- Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its
Phosphorylation- Regulated Interaction With Transducin
Beta-Gamma
Length = 340
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 3 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLY 39
++L+GH K+ A+ W L S+ + G +I+W Y
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY 85
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 14/65 (21%)
Query: 59 LRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIE------VSVGIHHNVDELLVG 112
L RP IIVANK D A A+NL A FK K + +S + ELL
Sbjct: 272 LTERPQIIVANKXDXPEA-------AENLEA-FKEKLTDDYPVFPISAVTREGLRELLFE 323
Query: 113 ILNQI 117
+ NQ+
Sbjct: 324 VANQL 328
>pdb|1HUX|A Chain A, Crystal Structure Of The Acidaminococcus Fermentans (R)-2-
Hydroxyglutaryl-Coa Dehydratase Component A
pdb|1HUX|B Chain B, Crystal Structure Of The Acidaminococcus Fermentans (R)-2-
Hydroxyglutaryl-Coa Dehydratase Component A
Length = 270
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 96 IEVSVGIHHNVDELLVGILNQIRLKRSLVQTGG 128
I++ GIH +V ++G+ N++ + + +V TGG
Sbjct: 185 IDIIAGIHRSVASRVIGLANRVGIVKDVVMTGG 217
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 65 IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120
+++ NK DL R V ++ + A + F+E S NV+E + +I K
Sbjct: 130 MLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRK 185
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 11 KVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDV---IRLHEEGYLRTRP 63
KV+ IW+ E++ +T++ G + ++Y + R ++ + E
Sbjct: 51 KVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQ 110
Query: 64 AIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120
++V NK D R V++ + LA + FIE S NV+E+ + I+ K
Sbjct: 111 LLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166
>pdb|3L7R|A Chain A, Crystal Structure Of Mete From Streptococcus Mutans
pdb|3T0C|A Chain A, Crystal Structure Of Streptococcus Mutans Mete Complexed
With Zinc
Length = 779
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 139 TTLVRASAVIVGSVDGNRIWGKEFKKTSML 168
T + + G +DG IW +F KTS L
Sbjct: 305 TGAFKGKEIFAGVIDGRNIWSSDFVKTSAL 334
>pdb|2NQ5|A Chain A, Crystal Structure Of Methyltransferase From Streptococcus
Mutans
Length = 755
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 139 TTLVRASAVIVGSVDGNRIWGKEFKKTSML 168
T + + G +DG IW +F KTS L
Sbjct: 273 TGAFKGKEIFAGVIDGRNIWSSDFVKTSAL 302
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 20 QYEKLTSSDE--TGLIIVW--MLY--KPSYHRVEQDVIRLHEEGYLRTRP 63
QY K TS+ + + I++W M Y +P + QDVI+ EEGY P
Sbjct: 221 QYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLPAP 270
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,985,055
Number of Sequences: 62578
Number of extensions: 267504
Number of successful extensions: 910
Number of sequences better than 100.0: 184
Number of HSP's better than 100.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 698
Number of HSP's gapped (non-prelim): 193
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)