Query psy14042
Match_columns 238
No_of_seqs 297 out of 1843
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 18:07:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14042.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14042hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 99.9 1.8E-26 3.9E-31 185.8 12.8 123 2-125 48-179 (205)
2 KOG0098|consensus 99.9 3.4E-26 7.4E-31 182.6 11.1 122 3-125 46-175 (216)
3 KOG0092|consensus 99.9 6.8E-26 1.5E-30 181.9 12.5 122 1-123 43-172 (200)
4 KOG0078|consensus 99.9 6.4E-26 1.4E-30 184.8 12.4 119 3-122 52-178 (207)
5 KOG2041|consensus 99.9 2.3E-27 5.1E-32 218.9 -0.6 166 1-236 63-236 (1189)
6 KOG0094|consensus 99.9 5.3E-25 1.1E-29 177.0 12.3 121 2-122 61-189 (221)
7 KOG0083|consensus 99.9 1.2E-24 2.5E-29 165.3 7.3 119 2-121 37-163 (192)
8 KOG0080|consensus 99.9 7.6E-24 1.6E-28 165.4 9.8 121 3-123 51-179 (209)
9 KOG0087|consensus 99.9 1.7E-23 3.7E-28 170.3 11.9 122 2-124 53-182 (222)
10 KOG0079|consensus 99.9 5.9E-24 1.3E-28 164.0 8.7 117 3-121 48-172 (198)
11 cd04121 Rab40 Rab40 subfamily. 99.9 5.8E-23 1.3E-27 168.9 14.8 118 3-122 46-171 (189)
12 KOG0093|consensus 99.9 1.3E-23 2.7E-28 162.0 9.6 120 3-123 61-188 (193)
13 KOG0394|consensus 99.9 6.8E-23 1.5E-27 163.4 13.3 122 1-122 47-182 (210)
14 KOG0088|consensus 99.9 2.6E-23 5.6E-28 162.1 10.3 122 2-124 52-181 (218)
15 cd04120 Rab12 Rab12 subfamily. 99.9 4.6E-22 9.9E-27 165.2 15.0 117 3-120 40-165 (202)
16 KOG0086|consensus 99.9 1E-22 2.2E-27 158.0 9.3 124 2-126 48-179 (214)
17 cd04133 Rop_like Rop subfamily 99.9 7.4E-22 1.6E-26 160.6 14.8 113 3-117 40-172 (176)
18 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 7.5E-22 1.6E-26 161.3 13.7 113 3-117 44-179 (182)
19 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 2.8E-21 6E-26 156.2 14.3 119 3-121 41-167 (172)
20 cd04131 Rnd Rnd subfamily. Th 99.9 3.6E-21 7.8E-26 156.7 14.2 113 3-117 40-175 (178)
21 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 4.8E-21 1E-25 162.2 15.4 117 3-121 52-191 (232)
22 KOG0091|consensus 99.9 2E-21 4.4E-26 152.3 11.6 116 8-123 54-178 (213)
23 KOG0081|consensus 99.9 8E-22 1.7E-26 153.9 9.1 116 8-123 63-186 (219)
24 PTZ00099 rab6; Provisional 99.9 1E-20 2.2E-25 153.9 16.0 118 3-121 20-145 (176)
25 KOG0095|consensus 99.9 4.7E-22 1E-26 153.8 7.5 121 1-122 45-173 (213)
26 cd01875 RhoG RhoG subfamily. 99.9 5.1E-21 1.1E-25 157.3 14.0 115 3-119 42-178 (191)
27 cd01873 RhoBTB RhoBTB subfamil 99.9 1.2E-20 2.5E-25 155.9 14.1 109 6-116 60-194 (195)
28 cd04144 Ras2 Ras2 subfamily. 99.8 6E-20 1.3E-24 150.5 15.4 123 3-125 38-170 (190)
29 KOG0097|consensus 99.8 9.8E-21 2.1E-25 145.4 9.6 122 2-124 50-179 (215)
30 cd04122 Rab14 Rab14 subfamily. 99.8 4.2E-20 9.1E-25 147.7 13.6 116 3-119 42-165 (166)
31 KOG0395|consensus 99.8 7.3E-20 1.6E-24 151.2 15.4 121 2-122 41-169 (196)
32 cd01874 Cdc42 Cdc42 subfamily. 99.8 6.3E-20 1.4E-24 148.7 14.3 112 3-116 40-173 (175)
33 cd04117 Rab15 Rab15 subfamily. 99.8 6.3E-20 1.4E-24 146.4 13.3 113 3-116 40-160 (161)
34 cd04136 Rap_like Rap-like subf 99.8 1.1E-19 2.5E-24 143.9 14.2 115 3-117 40-162 (163)
35 cd04103 Centaurin_gamma Centau 99.8 9.3E-20 2E-24 145.5 13.7 114 3-116 38-157 (158)
36 cd04175 Rap1 Rap1 subgroup. T 99.8 1.2E-19 2.6E-24 144.5 14.2 116 3-118 40-163 (164)
37 smart00176 RAN Ran (Ras-relate 99.8 1E-19 2.2E-24 150.9 13.9 115 3-121 35-157 (200)
38 PTZ00369 Ras-like protein; Pro 99.8 1.6E-19 3.4E-24 147.9 14.6 120 3-122 44-171 (189)
39 PF00071 Ras: Ras family; Int 99.8 1E-19 2.2E-24 144.4 13.1 116 2-118 38-161 (162)
40 cd04134 Rho3 Rho3 subfamily. 99.8 2.4E-19 5.1E-24 147.0 15.3 117 3-121 39-177 (189)
41 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 2.5E-19 5.5E-24 148.1 14.8 122 3-124 40-174 (201)
42 cd01871 Rac1_like Rac1-like su 99.8 2.4E-19 5.1E-24 145.2 13.7 112 3-116 40-173 (174)
43 cd04176 Rap2 Rap2 subgroup. T 99.8 3.2E-19 6.9E-24 141.8 14.1 115 3-117 40-162 (163)
44 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 3.2E-19 7E-24 150.2 14.9 117 3-121 40-179 (222)
45 cd04127 Rab27A Rab27a subfamil 99.8 2.8E-19 6.1E-24 144.5 12.9 111 9-119 60-178 (180)
46 cd04128 Spg1 Spg1p. Spg1p (se 99.8 4.1E-19 9E-24 145.0 13.9 117 3-121 40-169 (182)
47 smart00174 RHO Rho (Ras homolo 99.8 5.3E-19 1.1E-23 142.0 14.3 114 3-118 37-172 (174)
48 cd01865 Rab3 Rab3 subfamily. 99.8 6.6E-19 1.4E-23 140.7 14.0 115 4-119 42-164 (165)
49 cd01867 Rab8_Rab10_Rab13_like 99.8 7.2E-19 1.6E-23 140.8 13.9 116 3-119 43-166 (167)
50 cd04125 RabA_like RabA-like su 99.8 1.2E-18 2.6E-23 142.3 15.3 121 3-124 40-168 (188)
51 cd04111 Rab39 Rab39 subfamily. 99.8 1.1E-18 2.4E-23 145.8 15.1 119 3-121 42-169 (211)
52 smart00173 RAS Ras subfamily o 99.8 1.2E-18 2.7E-23 138.4 14.2 117 2-118 38-162 (164)
53 cd04112 Rab26 Rab26 subfamily. 99.8 1.2E-18 2.6E-23 143.0 14.5 119 3-122 41-167 (191)
54 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 1E-18 2.2E-23 140.9 13.8 117 3-119 40-166 (170)
55 cd04126 Rab20 Rab20 subfamily. 99.8 8.7E-19 1.9E-23 147.4 13.9 111 10-121 42-193 (220)
56 PLN03071 GTP-binding nuclear p 99.8 1.8E-18 3.9E-23 145.3 14.5 115 4-122 54-176 (219)
57 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 1.7E-18 3.7E-23 138.1 13.7 115 3-118 42-164 (166)
58 cd04110 Rab35 Rab35 subfamily. 99.8 2.4E-18 5.2E-23 142.2 14.9 119 3-123 46-172 (199)
59 cd04109 Rab28 Rab28 subfamily. 99.8 1.4E-18 3.1E-23 145.3 13.6 118 3-120 40-168 (215)
60 cd04119 RJL RJL (RabJ-Like) su 99.8 1.6E-18 3.4E-23 137.5 13.2 116 3-118 40-167 (168)
61 PLN03110 Rab GTPase; Provision 99.8 2.2E-18 4.9E-23 144.3 14.1 118 3-121 52-177 (216)
62 cd04145 M_R_Ras_like M-Ras/R-R 99.8 2.9E-18 6.3E-23 136.0 13.9 115 3-117 41-163 (164)
63 cd04138 H_N_K_Ras_like H-Ras/N 99.8 3.7E-18 8E-23 134.6 13.9 114 3-117 40-161 (162)
64 cd04116 Rab9 Rab9 subfamily. 99.8 2.8E-18 6.1E-23 137.4 13.0 113 3-116 45-169 (170)
65 cd04140 ARHI_like ARHI subfami 99.8 4E-18 8.7E-23 136.2 13.8 112 4-115 41-162 (165)
66 cd04115 Rab33B_Rab33A Rab33B/R 99.8 4.1E-18 8.9E-23 136.9 13.3 115 3-117 42-168 (170)
67 cd04146 RERG_RasL11_like RERG/ 99.8 6.6E-18 1.4E-22 134.7 14.2 116 3-118 38-164 (165)
68 cd01868 Rab11_like Rab11-like. 99.8 4.5E-18 9.8E-23 135.4 13.2 115 2-117 42-164 (165)
69 PLN03108 Rab family protein; P 99.8 8.2E-18 1.8E-22 140.3 15.2 118 3-121 46-171 (210)
70 cd00877 Ran Ran (Ras-related n 99.8 8.4E-18 1.8E-22 134.9 14.7 112 5-120 42-161 (166)
71 cd04106 Rab23_lke Rab23-like s 99.8 3.8E-18 8.2E-23 135.2 12.4 112 3-116 40-161 (162)
72 cd04148 RGK RGK subfamily. Th 99.8 1.2E-17 2.5E-22 140.6 15.8 121 3-123 41-168 (221)
73 cd04177 RSR1 RSR1 subgroup. R 99.8 1.1E-17 2.5E-22 133.9 14.9 116 3-118 40-164 (168)
74 cd04118 Rab24 Rab24 subfamily. 99.8 2E-17 4.4E-22 135.4 16.6 117 3-121 41-169 (193)
75 cd04130 Wrch_1 Wrch-1 subfamil 99.8 1E-17 2.3E-22 134.9 14.4 110 3-114 39-170 (173)
76 cd04132 Rho4_like Rho4-like su 99.8 1.2E-17 2.7E-22 135.8 14.2 118 4-123 40-172 (187)
77 cd01866 Rab2 Rab2 subfamily. 99.8 1.3E-17 2.7E-22 133.8 13.8 116 3-119 44-167 (168)
78 cd04113 Rab4 Rab4 subfamily. 99.8 1.1E-17 2.4E-22 132.7 12.7 113 3-116 40-160 (161)
79 cd04124 RabL2 RabL2 subfamily. 99.8 2E-17 4.4E-22 131.8 14.1 112 4-120 41-160 (161)
80 cd01864 Rab19 Rab19 subfamily. 99.8 1.5E-17 3.2E-22 132.7 12.6 113 3-116 43-164 (165)
81 cd04142 RRP22 RRP22 subfamily. 99.8 3.9E-17 8.4E-22 135.2 15.5 119 3-121 40-177 (198)
82 cd04143 Rhes_like Rhes_like su 99.7 2.4E-17 5.2E-22 140.9 14.3 115 3-117 39-170 (247)
83 PLN03118 Rab family protein; P 99.7 3.2E-17 7E-22 136.5 14.7 119 3-121 53-180 (211)
84 cd04135 Tc10 TC10 subfamily. 99.7 5.2E-17 1.1E-21 130.3 14.9 113 3-117 39-173 (174)
85 KOG0393|consensus 99.7 1.8E-17 3.9E-22 135.5 12.0 118 3-122 43-183 (198)
86 cd04101 RabL4 RabL4 (Rab-like4 99.7 3.6E-17 7.7E-22 130.0 12.6 112 4-117 43-163 (164)
87 cd04129 Rho2 Rho2 subfamily. 99.7 1.1E-16 2.4E-21 130.8 14.7 117 4-122 41-177 (187)
88 smart00175 RAB Rab subfamily o 99.7 9.7E-17 2.1E-21 127.0 13.4 116 3-119 40-163 (164)
89 cd01861 Rab6 Rab6 subfamily. 99.7 7.4E-17 1.6E-21 127.6 12.7 113 3-116 40-160 (161)
90 cd04123 Rab21 Rab21 subfamily. 99.7 1.1E-16 2.5E-21 126.0 13.5 114 3-117 40-161 (162)
91 cd01860 Rab5_related Rab5-rela 99.7 1.1E-16 2.3E-21 126.9 13.3 115 2-117 40-162 (163)
92 cd01870 RhoA_like RhoA-like su 99.7 2.5E-16 5.4E-21 126.5 14.9 113 3-117 40-174 (175)
93 cd04139 RalA_RalB RalA/RalB su 99.7 2.2E-16 4.8E-21 124.8 14.3 116 3-118 39-162 (164)
94 cd01863 Rab18 Rab18 subfamily. 99.7 2.2E-16 4.8E-21 125.0 14.0 112 4-116 41-160 (161)
95 cd01892 Miro2 Miro2 subfamily. 99.7 1.9E-16 4E-21 127.5 12.1 113 3-118 45-166 (169)
96 cd01862 Rab7 Rab7 subfamily. 99.7 6.5E-16 1.4E-20 123.3 14.0 118 3-120 40-169 (172)
97 cd04137 RheB Rheb (Ras Homolog 99.7 8.9E-16 1.9E-20 124.1 14.5 120 3-122 40-167 (180)
98 cd04114 Rab30 Rab30 subfamily. 99.7 7.1E-16 1.5E-20 123.0 13.5 114 3-117 47-168 (169)
99 cd04147 Ras_dva Ras-dva subfam 99.7 8.3E-16 1.8E-20 126.8 14.3 117 3-119 38-164 (198)
100 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 1.2E-16 2.6E-21 128.1 7.8 108 5-114 37-162 (164)
101 cd04158 ARD1 ARD1 subfamily. 99.7 6E-16 1.3E-20 124.3 10.8 111 9-121 40-164 (169)
102 cd00876 Ras Ras family. The R 99.7 1.9E-15 4.2E-20 118.8 12.4 114 3-116 38-159 (160)
103 cd04149 Arf6 Arf6 subfamily. 99.6 4.7E-16 1E-20 125.1 8.4 104 10-115 51-167 (168)
104 PLN00223 ADP-ribosylation fact 99.6 8.5E-16 1.8E-20 125.3 9.7 109 9-119 58-179 (181)
105 cd01893 Miro1 Miro1 subfamily. 99.6 4.7E-15 1E-19 118.6 12.3 112 5-118 40-164 (166)
106 cd04150 Arf1_5_like Arf1-Arf5- 99.6 4.8E-16 1E-20 123.8 6.5 104 10-115 42-158 (159)
107 cd00157 Rho Rho (Ras homology) 99.6 1.1E-14 2.4E-19 116.0 13.9 110 4-115 40-170 (171)
108 smart00177 ARF ARF-like small 99.6 9.3E-16 2E-20 124.1 7.6 106 10-117 55-173 (175)
109 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 4.1E-15 8.9E-20 121.2 11.0 115 8-124 48-176 (183)
110 cd04154 Arl2 Arl2 subfamily. 99.6 5.8E-15 1.3E-19 118.8 10.2 107 4-114 52-171 (173)
111 PTZ00133 ADP-ribosylation fact 99.6 1.8E-15 3.8E-20 123.4 7.2 109 10-120 59-180 (182)
112 PTZ00132 GTP-binding nuclear p 99.6 3.2E-14 7E-19 118.7 14.2 115 4-122 50-172 (215)
113 cd00154 Rab Rab family. Rab G 99.6 2E-14 4.4E-19 112.0 12.0 111 3-114 40-158 (159)
114 PRK12297 obgE GTPase CgtA; Rev 99.6 1.9E-14 4E-19 131.5 10.7 149 28-182 236-390 (424)
115 cd04102 RabL3 RabL3 (Rab-like3 99.6 3.9E-14 8.5E-19 117.6 11.5 95 9-103 51-175 (202)
116 cd04161 Arl2l1_Arl13_like Arl2 99.5 1.3E-14 2.9E-19 116.4 7.7 105 11-115 42-166 (167)
117 PRK12296 obgE GTPase CgtA; Rev 99.5 3.2E-14 6.9E-19 131.8 10.4 151 28-182 236-404 (500)
118 cd04157 Arl6 Arl6 subfamily. 99.5 2.5E-14 5.5E-19 113.0 7.4 105 9-115 42-161 (162)
119 cd00879 Sar1 Sar1 subfamily. 99.5 7.1E-14 1.5E-18 113.9 10.1 109 4-116 57-189 (190)
120 cd04156 ARLTS1 ARLTS1 subfamil 99.5 5.3E-14 1.1E-18 111.2 8.9 104 10-115 42-159 (160)
121 KOG4252|consensus 99.5 1.3E-15 2.9E-20 121.4 -0.5 118 4-123 61-186 (246)
122 cd04151 Arl1 Arl1 subfamily. 99.5 2.3E-14 4.9E-19 113.5 6.6 105 9-115 40-157 (158)
123 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 8.4E-14 1.8E-18 112.4 9.6 103 11-115 58-173 (174)
124 cd00878 Arf_Arl Arf (ADP-ribos 99.5 1E-13 2.3E-18 109.4 8.4 103 11-115 42-157 (158)
125 cd04160 Arfrp1 Arfrp1 subfamil 99.5 3.4E-13 7.4E-18 107.2 10.7 103 11-115 49-166 (167)
126 TIGR00157 ribosome small subun 99.4 9.5E-13 2.1E-17 112.5 11.7 92 19-115 24-120 (245)
127 cd01890 LepA LepA subfamily. 99.4 9.6E-13 2.1E-17 105.9 11.2 103 8-117 63-176 (179)
128 PRK12299 obgE GTPase CgtA; Rev 99.4 1E-12 2.3E-17 117.0 11.9 94 28-121 236-331 (335)
129 cd01897 NOG NOG1 is a nucleola 99.4 9.7E-13 2.1E-17 104.7 10.4 86 28-117 79-167 (168)
130 PLN00023 GTP-binding protein; 99.4 1.4E-12 3.1E-17 114.7 10.6 85 9-93 80-189 (334)
131 cd01898 Obg Obg subfamily. Th 99.4 2.1E-12 4.6E-17 102.8 10.8 104 12-116 48-169 (170)
132 PF00025 Arf: ADP-ribosylation 99.4 5.3E-12 1.2E-16 102.3 12.6 109 5-117 53-175 (175)
133 smart00178 SAR Sar1p-like memb 99.4 2.1E-12 4.5E-17 105.4 9.9 104 11-116 60-183 (184)
134 KOG0073|consensus 99.4 5.4E-12 1.2E-16 99.4 10.9 115 3-119 53-179 (185)
135 cd04159 Arl10_like Arl10-like 99.3 4E-12 8.7E-17 99.1 8.3 103 11-115 43-158 (159)
136 KOG0070|consensus 99.3 1.7E-11 3.8E-16 98.4 10.6 112 4-119 55-179 (181)
137 TIGR02729 Obg_CgtA Obg family 99.3 2.9E-11 6.2E-16 107.6 11.4 89 28-117 235-328 (329)
138 KOG1673|consensus 99.3 4.7E-11 1E-15 93.4 11.0 119 1-121 58-189 (205)
139 cd04155 Arl3 Arl3 subfamily. 99.3 3.2E-11 6.9E-16 96.5 10.3 105 4-115 52-172 (173)
140 cd01881 Obg_like The Obg-like 99.2 6.6E-11 1.4E-15 94.5 9.7 89 28-116 74-175 (176)
141 KOG3883|consensus 99.2 1.2E-10 2.5E-15 91.0 10.6 110 9-118 57-175 (198)
142 cd04171 SelB SelB subfamily. 99.2 8.4E-11 1.8E-15 92.7 9.7 102 11-115 50-163 (164)
143 KOG0075|consensus 99.2 4.9E-11 1.1E-15 92.5 7.1 113 6-118 59-182 (186)
144 COG1100 GTPase SAR1 and relate 99.2 2.1E-10 4.6E-15 95.4 11.2 117 4-121 46-188 (219)
145 TIGR00231 small_GTP small GTP- 99.2 3.7E-10 8.1E-15 87.2 11.8 108 4-113 42-159 (161)
146 cd01878 HflX HflX subfamily. 99.2 1.1E-10 2.3E-15 96.4 8.9 83 28-116 120-203 (204)
147 TIGR02528 EutP ethanolamine ut 99.2 7.1E-11 1.5E-15 91.6 7.3 78 28-114 62-141 (142)
148 cd00882 Ras_like_GTPase Ras-li 99.2 5.7E-10 1.2E-14 85.0 12.0 109 6-114 39-156 (157)
149 KOG0096|consensus 99.2 4.1E-11 8.8E-16 96.6 5.4 109 10-122 57-173 (216)
150 cd01891 TypA_BipA TypA (tyrosi 99.2 1.3E-10 2.7E-15 95.5 8.3 101 5-109 58-173 (194)
151 cd01879 FeoB Ferrous iron tran 99.2 6.9E-10 1.5E-14 87.0 12.2 103 4-116 37-155 (158)
152 PRK03003 GTP-binding protein D 99.1 5.9E-10 1.3E-14 103.8 10.5 89 28-121 293-385 (472)
153 KOG4423|consensus 99.1 9.3E-11 2E-15 94.3 4.3 113 10-122 73-198 (229)
154 TIGR01393 lepA GTP-binding pro 99.1 8.7E-10 1.9E-14 105.2 10.4 104 8-118 66-180 (595)
155 KOG0071|consensus 99.1 4.2E-10 9E-15 86.8 6.6 106 10-117 59-177 (180)
156 TIGR03156 GTP_HflX GTP-binding 99.0 9.6E-10 2.1E-14 98.6 9.3 82 28-116 268-350 (351)
157 PRK04213 GTP-binding protein; 99.0 3.1E-10 6.8E-15 93.3 5.4 57 60-120 129-194 (201)
158 cd01887 IF2_eIF5B IF2/eIF5B (i 99.0 2.1E-09 4.6E-14 85.2 9.1 102 11-117 49-165 (168)
159 PRK15467 ethanolamine utilizat 99.0 2.3E-09 5E-14 85.4 8.8 82 28-119 64-148 (158)
160 KOG0076|consensus 99.0 5.9E-10 1.3E-14 88.8 5.0 114 5-120 64-189 (197)
161 cd01894 EngA1 EngA1 subfamily. 99.0 5.7E-09 1.2E-13 81.5 10.6 79 28-116 76-156 (157)
162 cd01888 eIF2_gamma eIF2-gamma 99.0 1.5E-09 3.1E-14 90.1 7.4 104 12-118 83-199 (203)
163 PRK15494 era GTPase Era; Provi 99.0 7E-09 1.5E-13 92.7 11.5 107 5-121 95-219 (339)
164 TIGR00436 era GTP-binding prot 98.9 7.8E-09 1.7E-13 89.5 11.0 86 28-120 79-166 (270)
165 KOG0072|consensus 98.9 2E-09 4.4E-14 83.3 6.5 111 9-119 59-180 (182)
166 cd00881 GTP_translation_factor 98.9 6.9E-09 1.5E-13 83.6 9.2 102 11-117 61-186 (189)
167 TIGR03594 GTPase_EngA ribosome 98.9 2.4E-08 5.3E-13 91.6 13.6 88 28-120 254-346 (429)
168 TIGR00450 mnmE_trmE_thdF tRNA 98.9 1.3E-08 2.8E-13 94.0 11.7 102 4-120 245-362 (442)
169 TIGR00437 feoB ferrous iron tr 98.9 1.3E-08 2.8E-13 97.2 11.9 103 5-117 36-154 (591)
170 PRK05291 trmE tRNA modificatio 98.9 1.2E-08 2.7E-13 94.4 10.3 99 4-119 257-371 (449)
171 TIGR00487 IF-2 translation ini 98.9 2E-08 4.2E-13 95.7 11.8 96 13-115 136-247 (587)
172 TIGR00475 selB selenocysteine- 98.9 1.4E-08 3.1E-13 96.7 10.6 101 12-120 50-168 (581)
173 cd01889 SelB_euk SelB subfamil 98.9 1.3E-08 2.8E-13 83.3 9.0 105 9-118 65-186 (192)
174 PRK05433 GTP-binding protein L 98.9 1.5E-08 3.2E-13 96.9 10.7 105 8-119 70-185 (600)
175 PRK03003 GTP-binding protein D 98.8 1.3E-08 2.7E-13 94.9 9.6 83 28-119 117-200 (472)
176 cd04164 trmE TrmE (MnmE, ThdF, 98.8 1.6E-08 3.5E-13 78.7 7.8 76 28-117 80-156 (157)
177 cd01895 EngA2 EngA2 subfamily. 98.8 6.3E-08 1.4E-12 76.5 10.9 83 28-115 84-172 (174)
178 PRK11058 GTPase HflX; Provisio 98.8 3.3E-08 7.2E-13 90.9 10.3 87 28-120 276-364 (426)
179 PRK12288 GTPase RsgA; Reviewed 98.8 4.7E-08 1E-12 87.6 10.7 84 28-115 120-205 (347)
180 cd00880 Era_like Era (E. coli 98.8 5.7E-08 1.2E-12 74.9 9.5 101 11-116 44-162 (163)
181 PF08477 Miro: Miro-like prote 98.8 2.1E-08 4.5E-13 75.3 6.7 67 4-72 42-119 (119)
182 cd01854 YjeQ_engC YjeQ/EngC. 98.8 4.8E-08 1E-12 85.4 9.9 81 28-114 78-160 (287)
183 PRK00098 GTPase RsgA; Reviewed 98.8 3.8E-08 8.3E-13 86.5 9.3 82 28-114 80-163 (298)
184 PRK12298 obgE GTPase CgtA; Rev 98.8 5.7E-08 1.2E-12 88.4 10.6 92 28-120 237-335 (390)
185 PRK12289 GTPase RsgA; Reviewed 98.8 5.9E-08 1.3E-12 87.0 10.4 82 28-115 89-172 (352)
186 cd01855 YqeH YqeH. YqeH is an 98.7 2.3E-08 5E-13 81.8 6.4 98 13-118 15-125 (190)
187 CHL00189 infB translation init 98.7 6E-08 1.3E-12 94.2 10.0 98 9-117 292-409 (742)
188 TIGR01394 TypA_BipA GTP-bindin 98.7 3.1E-07 6.7E-12 87.7 14.7 109 7-119 59-192 (594)
189 PRK05306 infB translation init 98.7 1.2E-07 2.6E-12 92.8 12.0 97 12-116 337-450 (787)
190 TIGR00483 EF-1_alpha translati 98.7 1.7E-07 3.7E-12 86.2 11.9 102 7-111 80-200 (426)
191 cd04163 Era Era subfamily. Er 98.7 8.4E-08 1.8E-12 74.9 8.3 84 28-116 82-167 (168)
192 cd01859 MJ1464 MJ1464. This f 98.7 4.6E-08 1E-12 77.4 6.6 84 28-118 12-96 (156)
193 PF00009 GTP_EFTU: Elongation 98.7 7.9E-08 1.7E-12 78.5 8.1 106 9-118 67-187 (188)
194 TIGR00491 aIF-2 translation in 98.6 9E-07 1.9E-11 84.4 15.3 98 13-118 70-216 (590)
195 TIGR03597 GTPase_YqeH ribosome 98.6 9E-08 1.9E-12 86.3 6.6 91 18-116 50-151 (360)
196 PRK09518 bifunctional cytidyla 98.6 3.5E-07 7.6E-12 89.3 10.7 86 28-120 532-623 (712)
197 PRK04000 translation initiatio 98.6 2.1E-07 4.6E-12 85.3 8.5 104 11-118 84-201 (411)
198 PRK00093 GTP-binding protein D 98.6 3.7E-07 8E-12 84.0 10.0 101 4-116 43-160 (435)
199 PRK12317 elongation factor 1-a 98.6 1.4E-06 3E-11 80.2 13.8 100 9-111 81-198 (425)
200 PRK00454 engB GTP-binding prot 98.6 4.6E-07 1E-11 73.8 9.3 86 28-118 106-194 (196)
201 PRK00089 era GTPase Era; Revie 98.5 4.7E-07 1E-11 79.1 9.3 88 28-120 84-173 (292)
202 KOG0074|consensus 98.5 1.9E-07 4.2E-12 72.3 6.0 111 3-114 54-175 (185)
203 TIGR03680 eif2g_arch translati 98.5 2.6E-07 5.7E-12 84.5 7.8 105 11-118 79-196 (406)
204 TIGR03594 GTPase_EngA ribosome 98.5 5.5E-07 1.2E-11 82.6 9.7 82 28-119 78-161 (429)
205 PRK09554 feoB ferrous iron tra 98.5 1.3E-06 2.9E-11 85.7 12.5 103 7-117 45-167 (772)
206 PRK10512 selenocysteinyl-tRNA- 98.5 4.4E-07 9.5E-12 87.1 9.0 101 13-117 52-165 (614)
207 PRK00093 GTP-binding protein D 98.5 4.9E-07 1.1E-11 83.2 8.8 87 28-120 255-346 (435)
208 PRK10218 GTP-binding protein; 98.5 8.7E-07 1.9E-11 84.8 10.1 110 5-118 61-195 (607)
209 KOG1489|consensus 98.5 1E-06 2.2E-11 76.8 9.1 85 28-115 274-364 (366)
210 PRK09518 bifunctional cytidyla 98.4 1.1E-06 2.5E-11 85.8 10.5 82 28-119 354-437 (712)
211 PF02421 FeoB_N: Ferrous iron 98.4 5.9E-07 1.3E-11 71.6 6.7 79 28-113 78-156 (156)
212 cd04167 Snu114p Snu114p subfam 98.4 8.2E-07 1.8E-11 74.0 7.4 95 8-107 67-192 (213)
213 COG0536 Obg Predicted GTPase [ 98.4 2.2E-06 4.7E-11 75.5 9.4 95 28-122 237-337 (369)
214 cd01858 NGP_1 NGP-1. Autoanti 98.4 1.8E-06 3.9E-11 68.4 8.1 87 28-118 8-95 (157)
215 cd01896 DRG The developmentall 98.4 3.9E-06 8.4E-11 71.2 10.6 50 61-117 176-225 (233)
216 cd01849 YlqF_related_GTPase Yl 98.3 4.2E-06 9E-11 66.3 8.9 85 30-119 1-86 (155)
217 PRK14845 translation initiatio 98.3 3.8E-06 8.2E-11 84.4 10.2 97 14-118 528-673 (1049)
218 cd01885 EF2 EF2 (for archaea a 98.3 3.1E-06 6.7E-11 71.3 8.2 61 9-74 70-138 (222)
219 KOG1707|consensus 98.3 8.7E-07 1.9E-11 82.5 4.7 111 10-120 54-177 (625)
220 cd04166 CysN_ATPS CysN_ATPS su 98.3 2.7E-06 5.8E-11 70.8 7.3 95 12-109 77-185 (208)
221 PRK04004 translation initiatio 98.2 4.6E-06 1E-10 79.7 9.3 96 14-117 73-217 (586)
222 COG0532 InfB Translation initi 98.2 6.2E-05 1.3E-09 69.8 16.0 162 12-202 55-238 (509)
223 cd01883 EF1_alpha Eukaryotic e 98.2 2.5E-06 5.3E-11 71.6 6.0 94 10-107 75-194 (219)
224 TIGR00485 EF-Tu translation el 98.2 9.2E-06 2E-10 74.1 9.7 94 7-104 70-179 (394)
225 PRK12736 elongation factor Tu; 98.2 8.2E-06 1.8E-10 74.4 9.0 105 10-118 73-201 (394)
226 TIGR03598 GTPase_YsxC ribosome 98.2 6.9E-06 1.5E-10 66.4 7.5 75 28-107 100-179 (179)
227 cd04168 TetM_like Tet(M)-like 98.1 1.5E-05 3.3E-10 67.7 9.5 63 7-74 59-129 (237)
228 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 3.2E-06 7E-11 65.9 4.9 71 28-105 11-84 (141)
229 KOG0462|consensus 98.1 1.8E-05 3.9E-10 73.5 10.2 108 8-119 121-236 (650)
230 cd01876 YihA_EngB The YihA (En 98.1 1.6E-05 3.5E-10 62.0 8.7 84 28-116 81-169 (170)
231 cd04105 SR_beta Signal recogni 98.1 5.1E-06 1.1E-10 68.9 5.9 66 10-75 46-123 (203)
232 PRK13796 GTPase YqeH; Provisio 98.1 6.3E-06 1.4E-10 74.5 6.8 90 19-116 57-157 (365)
233 COG2229 Predicted GTPase [Gene 98.1 2.4E-05 5.2E-10 63.2 9.2 99 12-116 68-176 (187)
234 cd04165 GTPBP1_like GTPBP1-lik 98.1 2.4E-05 5.3E-10 66.0 9.5 99 12-114 84-219 (224)
235 PF10662 PduV-EutP: Ethanolami 98.1 6.8E-06 1.5E-10 64.4 5.6 77 28-114 63-142 (143)
236 PRK01889 GTPase RsgA; Reviewed 98.1 2.6E-05 5.6E-10 70.3 9.5 80 28-114 112-193 (356)
237 COG2262 HflX GTPases [General 98.1 3.3E-05 7.2E-10 69.6 10.0 97 19-121 260-359 (411)
238 cd01856 YlqF YlqF. Proteins o 98.1 1.9E-05 4.2E-10 63.5 7.9 83 28-119 19-102 (171)
239 COG1159 Era GTPase [General fu 98.0 3.6E-05 7.8E-10 66.8 8.5 90 28-121 85-175 (298)
240 TIGR00101 ureG urease accessor 98.0 2.1E-05 4.6E-10 65.1 6.9 78 29-117 113-195 (199)
241 cd01884 EF_Tu EF-Tu subfamily. 98.0 6.2E-05 1.3E-09 62.1 9.6 92 11-106 64-171 (195)
242 COG0481 LepA Membrane GTPase L 97.9 0.00021 4.6E-09 65.6 13.2 101 8-119 72-187 (603)
243 PRK12735 elongation factor Tu; 97.9 5E-05 1.1E-09 69.3 9.1 104 10-117 73-202 (396)
244 PLN00043 elongation factor 1-a 97.9 4E-05 8.8E-10 71.0 7.7 95 10-108 83-203 (447)
245 TIGR03596 GTPase_YlqF ribosome 97.9 7.1E-05 1.5E-09 65.0 8.7 85 28-121 21-106 (276)
246 COG1160 Predicted GTPases [Gen 97.9 0.00031 6.7E-09 64.2 12.9 97 19-120 247-353 (444)
247 KOG1145|consensus 97.9 0.00052 1.1E-08 64.1 14.3 161 12-200 201-382 (683)
248 PRK09866 hypothetical protein; 97.9 0.00012 2.6E-09 69.9 10.4 85 28-115 258-350 (741)
249 smart00010 small_GTPase Small 97.8 6E-05 1.3E-09 56.3 6.9 69 28-107 46-115 (124)
250 TIGR00073 hypB hydrogenase acc 97.8 6.4E-05 1.4E-09 62.4 7.2 56 61-116 148-205 (207)
251 KOG0705|consensus 97.8 0.00014 3E-09 67.7 9.5 124 2-125 67-196 (749)
252 PRK00741 prfC peptide chain re 97.8 0.00014 2.9E-09 68.9 9.4 63 7-74 74-144 (526)
253 COG0486 ThdF Predicted GTPase 97.7 0.00023 5E-09 65.2 10.1 104 4-120 259-378 (454)
254 PRK09563 rbgA GTPase YlqF; Rev 97.7 0.00015 3.3E-09 63.3 8.6 84 28-120 24-108 (287)
255 COG1162 Predicted GTPases [Gen 97.7 0.0004 8.7E-09 60.7 10.8 92 19-114 67-163 (301)
256 KOG0077|consensus 97.7 3.3E-05 7.1E-10 61.6 3.6 107 5-115 59-190 (193)
257 PTZ00327 eukaryotic translatio 97.7 0.00012 2.7E-09 68.0 7.9 103 13-118 118-233 (460)
258 PRK13351 elongation factor G; 97.7 0.00023 5.1E-09 69.4 9.7 61 10-75 71-139 (687)
259 COG1160 Predicted GTPases [Gen 97.6 0.00028 6.2E-09 64.5 9.1 82 28-118 83-165 (444)
260 cd00066 G-alpha G protein alph 97.6 0.00044 9.6E-09 61.3 10.0 112 10-121 159-314 (317)
261 TIGR02034 CysN sulfate adenyly 97.6 0.00019 4.1E-09 65.8 7.7 96 11-109 79-188 (406)
262 smart00275 G_alpha G protein a 97.6 0.0011 2.3E-08 59.6 11.9 115 5-121 179-337 (342)
263 cd01899 Ygr210 Ygr210 subfamil 97.6 0.00035 7.5E-09 62.0 8.5 57 61-121 214-272 (318)
264 PRK05124 cysN sulfate adenylyl 97.6 0.00016 3.5E-09 67.6 6.5 97 11-110 106-217 (474)
265 KOG1423|consensus 97.6 0.00021 4.5E-09 62.4 6.6 89 28-120 155-273 (379)
266 PRK13768 GTPase; Provisional 97.5 0.00057 1.2E-08 58.7 8.5 87 29-117 129-246 (253)
267 CHL00071 tufA elongation facto 97.5 0.00057 1.2E-08 62.7 8.8 92 11-106 74-181 (409)
268 TIGR00503 prfC peptide chain r 97.5 0.00057 1.2E-08 64.7 8.9 65 6-74 74-145 (527)
269 cd04104 p47_IIGP_like p47 (47- 97.5 0.00073 1.6E-08 55.6 8.5 89 28-123 80-189 (197)
270 PF04670 Gtr1_RagA: Gtr1/RagA 97.4 0.0012 2.5E-08 56.1 9.5 108 10-120 46-178 (232)
271 PRK12740 elongation factor G; 97.4 0.00062 1.3E-08 66.3 8.7 59 11-74 59-125 (668)
272 cd04169 RF3 RF3 subfamily. Pe 97.4 0.00061 1.3E-08 59.0 7.8 66 6-76 65-138 (267)
273 PRK00049 elongation factor Tu; 97.4 0.0013 2.9E-08 60.0 10.0 102 11-116 74-201 (396)
274 PLN03126 Elongation factor Tu; 97.3 0.00063 1.4E-08 63.6 7.5 92 10-105 142-249 (478)
275 COG4917 EutP Ethanolamine util 97.3 0.00056 1.2E-08 52.3 5.3 77 28-115 64-143 (148)
276 PRK05506 bifunctional sulfate 97.3 0.00078 1.7E-08 65.2 7.4 94 12-108 104-211 (632)
277 PLN03127 Elongation factor Tu; 97.2 0.0025 5.3E-08 59.3 10.2 103 11-117 123-251 (447)
278 COG0370 FeoB Fe2+ transport sy 97.1 0.0015 3.2E-08 62.5 7.6 87 28-121 81-167 (653)
279 KOG1490|consensus 97.1 0.00099 2.1E-08 61.7 5.9 94 30-125 249-348 (620)
280 COG0218 Predicted GTPase [Gene 97.1 0.0052 1.1E-07 50.7 9.5 88 28-119 106-198 (200)
281 KOG0273|consensus 97.1 0.00085 1.8E-08 61.1 4.9 52 166-223 237-288 (524)
282 PTZ00141 elongation factor 1- 97.0 0.0024 5.1E-08 59.3 7.5 95 10-108 83-203 (446)
283 cd01850 CDC_Septin CDC/Septin. 97.0 0.0072 1.6E-07 52.6 10.1 70 28-102 114-186 (276)
284 cd01886 EF-G Elongation factor 96.9 0.0027 5.9E-08 55.0 7.0 87 11-101 63-158 (270)
285 KOG1707|consensus 96.9 0.0065 1.4E-07 57.2 9.8 88 28-119 495-584 (625)
286 TIGR00750 lao LAO/AO transport 96.9 0.0026 5.7E-08 55.9 6.9 59 60-118 171-238 (300)
287 cd04170 EF-G_bact Elongation f 96.9 0.0046 9.9E-08 53.3 7.9 94 11-111 63-166 (268)
288 COG0378 HypB Ni2+-binding GTPa 96.9 0.0021 4.5E-08 52.8 5.2 54 63-116 144-199 (202)
289 PRK09435 membrane ATPase/prote 96.8 0.0067 1.4E-07 54.2 8.7 85 28-120 169-262 (332)
290 KOG0271|consensus 96.7 0.0043 9.3E-08 55.5 6.7 81 148-235 131-223 (480)
291 TIGR00484 EF-G translation elo 96.7 0.011 2.3E-07 58.0 9.6 61 11-76 74-142 (689)
292 COG5257 GCD11 Translation init 96.6 0.0036 7.7E-08 55.2 5.3 88 28-122 109-206 (415)
293 PRK12739 elongation factor G; 96.6 0.013 2.9E-07 57.3 9.7 58 12-74 73-138 (691)
294 KOG1144|consensus 96.5 0.014 3.1E-07 56.5 9.1 101 14-122 542-691 (1064)
295 COG3276 SelB Selenocysteine-sp 96.5 0.061 1.3E-06 49.3 12.5 102 13-118 51-162 (447)
296 PRK10463 hydrogenase nickel in 96.5 0.0058 1.3E-07 53.4 5.8 56 61-116 230-287 (290)
297 COG1084 Predicted GTPase [Gene 96.5 0.0074 1.6E-07 53.3 6.4 86 28-117 247-335 (346)
298 COG1217 TypA Predicted membran 96.5 0.021 4.5E-07 52.8 9.4 109 5-119 63-196 (603)
299 PF06858 NOG1: Nucleolar GTP-b 96.5 0.011 2.5E-07 38.8 5.7 42 29-72 14-58 (58)
300 KOG0283|consensus 96.4 0.016 3.5E-07 56.0 8.4 83 141-224 419-514 (712)
301 COG2895 CysN GTPases - Sulfate 96.2 0.019 4.2E-07 51.3 7.4 92 11-107 85-192 (431)
302 KOG0647|consensus 96.0 0.038 8.2E-07 48.2 8.2 75 143-224 39-126 (347)
303 KOG1532|consensus 95.9 0.18 3.9E-06 43.9 11.6 91 28-121 147-267 (366)
304 COG1163 DRG Predicted GTPase [ 95.9 0.035 7.5E-07 49.1 7.5 55 61-122 239-293 (365)
305 TIGR00490 aEF-2 translation el 95.9 0.03 6.6E-07 55.1 8.0 64 6-74 80-151 (720)
306 COG1161 Predicted GTPases [Gen 95.8 0.021 4.6E-07 50.8 5.9 79 28-114 34-113 (322)
307 cd04178 Nucleostemin_like Nucl 95.8 0.023 5E-07 45.9 5.5 44 30-76 1-45 (172)
308 PF12894 Apc4_WD40: Anaphase-p 95.7 0.037 8E-07 34.9 5.2 33 166-198 13-45 (47)
309 KOG1191|consensus 95.3 0.066 1.4E-06 49.7 7.5 95 28-123 348-455 (531)
310 PF09439 SRPRB: Signal recogni 95.1 0.042 9.1E-07 44.8 5.0 63 13-75 50-126 (181)
311 PF15492 Nbas_N: Neuroblastoma 95.0 0.09 2E-06 45.4 6.9 61 166-226 45-106 (282)
312 PRK00007 elongation factor G; 94.9 0.19 4.2E-06 49.3 9.8 29 93-121 255-283 (693)
313 COG5256 TEF1 Translation elong 94.8 0.095 2.1E-06 47.8 6.9 99 9-109 82-202 (428)
314 cd01882 BMS1 Bms1. Bms1 is an 94.7 0.15 3.3E-06 42.8 7.6 89 11-104 82-182 (225)
315 KOG0302|consensus 94.7 0.16 3.5E-06 45.6 7.8 77 143-225 269-361 (440)
316 PRK07560 elongation factor EF- 94.6 0.13 2.9E-06 50.7 7.9 63 8-74 83-152 (731)
317 COG0050 TufB GTPases - transla 94.6 0.21 4.6E-06 43.9 8.1 73 22-102 90-177 (394)
318 COG3596 Predicted GTPase [Gene 94.4 0.094 2E-06 45.5 5.5 92 28-122 117-226 (296)
319 KOG0461|consensus 93.9 0.29 6.3E-06 43.9 7.8 105 9-119 67-194 (522)
320 PF03029 ATP_bind_1: Conserved 93.8 0.19 4.2E-06 42.7 6.4 58 60-117 155-236 (238)
321 KOG3886|consensus 93.7 0.12 2.5E-06 43.9 4.8 90 11-102 52-163 (295)
322 PRK09602 translation-associate 93.7 0.094 2E-06 48.0 4.6 57 60-120 216-273 (396)
323 KOG0282|consensus 93.6 0.11 2.3E-06 47.9 4.7 63 156-225 425-488 (503)
324 PF00400 WD40: WD domain, G-be 93.5 0.17 3.7E-06 29.5 4.1 27 166-192 13-39 (39)
325 COG1703 ArgK Putative periplas 93.5 0.54 1.2E-05 41.3 8.6 88 28-123 164-259 (323)
326 KOG3905|consensus 93.4 0.18 3.8E-06 44.9 5.5 60 61-120 222-292 (473)
327 PF03308 ArgK: ArgK protein; 93.4 0.13 2.9E-06 44.2 4.7 58 62-120 168-232 (266)
328 KOG4640|consensus 92.7 0.39 8.4E-06 45.8 7.0 73 143-220 40-114 (665)
329 PF00503 G-alpha: G-protein al 92.6 1.4 3E-05 40.1 10.5 107 11-117 235-389 (389)
330 cd01852 AIG1 AIG1 (avrRpt2-ind 92.6 1.3 2.8E-05 36.0 9.4 92 28-120 83-186 (196)
331 TIGR02836 spore_IV_A stage IV 92.3 0.88 1.9E-05 42.1 8.6 82 28-115 144-234 (492)
332 cd03110 Fer4_NifH_child This p 92.2 1.2 2.5E-05 35.6 8.5 81 10-97 91-176 (179)
333 KOG1424|consensus 92.1 0.11 2.5E-06 48.5 2.8 77 19-102 163-244 (562)
334 KOG0458|consensus 91.9 0.99 2.1E-05 42.9 8.7 103 5-109 248-373 (603)
335 COG5258 GTPBP1 GTPase [General 91.2 1.4 3.1E-05 40.2 8.6 81 28-112 226-333 (527)
336 KOG0468|consensus 91.2 0.29 6.3E-06 47.3 4.4 61 8-73 193-261 (971)
337 KOG0090|consensus 91.1 1 2.2E-05 37.8 7.0 71 28-122 108-182 (238)
338 KOG0273|consensus 91.0 0.95 2.1E-05 41.8 7.4 80 145-230 248-337 (524)
339 smart00320 WD40 WD40 repeats. 90.8 0.52 1.1E-05 25.3 3.8 27 166-192 14-40 (40)
340 KOG1538|consensus 90.8 0.77 1.7E-05 44.4 6.7 56 166-224 134-189 (1081)
341 KOG0082|consensus 90.6 1.7 3.7E-05 39.2 8.6 110 12-121 195-347 (354)
342 PF05783 DLIC: Dynein light in 90.4 0.65 1.4E-05 43.5 6.0 61 61-121 196-267 (472)
343 KOG0466|consensus 89.9 0.32 6.9E-06 43.0 3.3 59 62-120 180-243 (466)
344 cd00200 WD40 WD40 domain, foun 89.9 2 4.3E-05 34.8 8.0 52 166-223 137-189 (289)
345 KOG2106|consensus 89.8 1.3 2.7E-05 41.5 7.1 76 145-225 419-505 (626)
346 KOG1274|consensus 89.7 1.1 2.5E-05 44.3 7.1 73 143-225 209-284 (933)
347 PF11111 CENP-M: Centromere pr 89.6 4.4 9.5E-05 32.8 9.3 90 28-119 64-154 (176)
348 KOG0305|consensus 89.6 0.7 1.5E-05 43.3 5.5 53 165-222 218-271 (484)
349 PF11768 DUF3312: Protein of u 89.2 2.9 6.4E-05 39.6 9.2 81 145-225 272-371 (545)
350 PTZ00416 elongation factor 2; 89.1 0.46 9.9E-06 47.7 4.2 60 11-74 91-157 (836)
351 KOG0284|consensus 88.2 0.58 1.3E-05 42.5 3.7 57 161-224 94-151 (464)
352 KOG1446|consensus 88.2 1.4 3.1E-05 38.6 6.0 43 166-208 189-232 (311)
353 PTZ00421 coronin; Provisional 87.7 4.3 9.3E-05 38.3 9.5 69 146-221 90-178 (493)
354 KOG4273|consensus 87.6 1.9 4.1E-05 37.1 6.3 70 16-89 64-137 (418)
355 KOG0288|consensus 87.6 1.3 2.8E-05 40.3 5.5 56 166-225 389-445 (459)
356 KOG2484|consensus 87.5 1.3 2.9E-05 40.4 5.6 71 28-104 146-219 (435)
357 KOG0266|consensus 87.5 2.8 6E-05 39.0 8.1 61 146-206 217-289 (456)
358 KOG0286|consensus 87.5 1.1 2.3E-05 39.2 4.8 40 166-205 57-97 (343)
359 cd00200 WD40 WD40 domain, foun 87.1 2.5 5.3E-05 34.2 6.8 52 166-223 11-63 (289)
360 PLN00116 translation elongatio 86.8 0.84 1.8E-05 45.9 4.4 59 11-74 97-163 (843)
361 KOG1143|consensus 86.8 4.9 0.00011 36.7 8.7 94 14-111 251-381 (591)
362 PTZ00421 coronin; Provisional 86.5 4.4 9.5E-05 38.3 8.8 59 146-204 140-209 (493)
363 PF14331 ImcF-related_N: ImcF- 86.4 1.9 4.1E-05 37.3 5.9 94 28-121 25-134 (266)
364 KOG1523|consensus 86.2 2.1 4.5E-05 37.9 5.9 53 166-224 12-68 (361)
365 KOG1273|consensus 86.1 2 4.3E-05 38.1 5.8 52 166-224 67-119 (405)
366 PF09269 DUF1967: Domain of un 84.7 0.086 1.9E-06 36.0 -2.6 35 147-182 2-37 (69)
367 PF08662 eIF2A: Eukaryotic tra 83.5 3.6 7.9E-05 33.6 6.1 51 166-224 102-156 (194)
368 KOG1486|consensus 83.2 6.9 0.00015 33.9 7.6 57 61-124 238-294 (364)
369 PF09419 PGP_phosphatase: Mito 83.2 14 0.0003 29.8 9.1 69 41-113 59-127 (168)
370 COG3640 CooC CO dehydrogenase 82.8 12 0.00025 32.1 8.8 75 12-96 134-214 (255)
371 KOG0272|consensus 82.7 3.8 8.2E-05 37.5 6.2 52 166-223 177-229 (459)
372 PF01926 MMR_HSR1: 50S ribosom 82.1 4.2 9.2E-05 29.7 5.5 38 28-70 79-116 (116)
373 smart00053 DYNc Dynamin, GTPas 81.3 4.5 9.7E-05 34.5 6.0 43 29-76 163-207 (240)
374 PTZ00258 GTP-binding protein; 80.0 4.1 8.8E-05 37.3 5.6 45 60-104 219-266 (390)
375 KOG2321|consensus 79.9 5.4 0.00012 38.1 6.3 53 167-223 231-283 (703)
376 KOG0266|consensus 79.6 13 0.00029 34.5 9.0 74 146-221 260-344 (456)
377 KOG0318|consensus 79.5 5.8 0.00013 37.4 6.4 74 145-224 456-543 (603)
378 COG1149 MinD superfamily P-loo 79.1 10 0.00022 33.0 7.3 59 28-96 185-243 (284)
379 PTZ00420 coronin; Provisional 79.0 17 0.00037 35.1 9.6 54 146-200 89-163 (568)
380 TIGR03595 Obg_CgtA_exten Obg f 78.9 0.15 3.3E-06 34.8 -3.0 33 149-182 4-37 (69)
381 KOG0265|consensus 78.7 5.6 0.00012 35.0 5.7 54 145-198 146-211 (338)
382 PTZ00420 coronin; Provisional 78.6 9.9 0.00021 36.6 7.9 57 148-204 142-208 (568)
383 KOG4378|consensus 78.5 4.8 0.0001 37.8 5.5 52 165-222 251-304 (673)
384 PRK13505 formate--tetrahydrofo 77.6 14 0.00031 35.3 8.4 85 28-118 322-429 (557)
385 PF08662 eIF2A: Eukaryotic tra 76.9 5.4 0.00012 32.6 5.0 38 166-203 145-188 (194)
386 PF13570 PQQ_3: PQQ-like domai 76.5 4.1 8.8E-05 24.1 3.1 20 175-194 20-39 (40)
387 COG4108 PrfC Peptide chain rel 76.2 14 0.0003 34.5 7.7 67 7-77 76-149 (528)
388 KOG4283|consensus 76.0 7.9 0.00017 34.1 5.8 74 143-223 113-200 (397)
389 KOG2423|consensus 75.9 16 0.00035 33.7 8.0 82 28-113 213-295 (572)
390 KOG0460|consensus 75.4 9.7 0.00021 34.4 6.3 70 28-101 140-218 (449)
391 KOG3887|consensus 75.1 45 0.00097 28.9 10.0 108 10-120 73-204 (347)
392 cd02038 FleN-like FleN is a me 74.7 9.5 0.00021 29.2 5.6 45 28-74 66-110 (139)
393 PLN00181 protein SPA1-RELATED; 74.3 24 0.00052 35.2 9.7 50 145-194 589-648 (793)
394 KOG0447|consensus 74.0 18 0.00039 34.8 8.0 74 28-103 448-526 (980)
395 smart00564 PQQ beta-propeller 73.7 6.8 0.00015 21.7 3.5 25 176-200 6-31 (33)
396 KOG0772|consensus 73.6 9 0.00019 36.2 5.9 37 163-199 316-352 (641)
397 KOG0099|consensus 73.4 13 0.00028 32.5 6.4 26 95-120 346-371 (379)
398 KOG0269|consensus 73.2 9 0.0002 37.7 6.0 62 166-237 222-284 (839)
399 PF14779 BBS1: Ciliary BBSome 72.5 4.1 8.9E-05 35.1 3.3 31 177-207 196-227 (257)
400 KOG1524|consensus 71.9 5.6 0.00012 37.7 4.2 56 160-222 183-238 (737)
401 KOG0284|consensus 71.3 10 0.00022 34.7 5.6 70 148-223 196-276 (464)
402 KOG0645|consensus 70.9 32 0.00069 30.0 8.2 56 162-222 60-116 (312)
403 COG0012 Predicted GTPase, prob 70.5 10 0.00022 34.4 5.4 43 60-102 205-248 (372)
404 PF04762 IKI3: IKI3 family; I 70.3 12 0.00026 38.2 6.6 66 156-224 114-179 (928)
405 PF00350 Dynamin_N: Dynamin fa 69.6 14 0.00031 28.6 5.7 40 28-71 128-168 (168)
406 COG0480 FusA Translation elong 69.3 15 0.00033 36.2 6.9 60 11-75 75-142 (697)
407 PF03193 DUF258: Protein of un 68.7 11 0.00025 30.0 4.9 32 83-114 3-34 (161)
408 KOG0463|consensus 68.5 18 0.00038 33.2 6.5 96 14-113 221-353 (641)
409 KOG0265|consensus 68.4 8.6 0.00019 33.9 4.4 55 161-222 264-319 (338)
410 cd02117 NifH_like This family 68.1 39 0.00085 27.6 8.3 66 28-97 141-207 (212)
411 KOG0277|consensus 67.7 33 0.00071 29.7 7.6 73 146-225 119-204 (311)
412 PF10313 DUF2415: Uncharacteri 66.9 21 0.00045 22.0 4.7 33 166-198 2-37 (43)
413 KOG0278|consensus 66.1 20 0.00043 31.1 6.0 52 166-217 145-201 (334)
414 PLN00181 protein SPA1-RELATED; 65.1 16 0.00035 36.3 6.3 49 145-193 721-792 (793)
415 KOG2048|consensus 64.8 22 0.00047 34.6 6.6 39 166-204 156-195 (691)
416 PF11768 DUF3312: Protein of u 64.6 19 0.0004 34.4 6.1 54 161-222 257-310 (545)
417 KOG0296|consensus 64.6 12 0.00027 33.7 4.7 37 166-202 192-229 (399)
418 KOG0289|consensus 64.0 14 0.0003 34.2 5.0 50 165-220 348-398 (506)
419 PF04841 Vps16_N: Vps16, N-ter 63.9 17 0.00037 33.4 5.7 46 151-197 67-112 (410)
420 KOG0291|consensus 63.8 20 0.00043 35.5 6.2 51 166-222 352-403 (893)
421 PF05049 IIGP: Interferon-indu 63.2 25 0.00054 32.1 6.5 89 28-123 114-223 (376)
422 KOG1587|consensus 63.1 21 0.00045 34.3 6.3 60 166-225 244-305 (555)
423 COG1163 DRG Predicted GTPase [ 62.5 95 0.0021 28.0 9.7 106 6-116 106-236 (365)
424 KOG2445|consensus 62.3 28 0.00061 30.9 6.4 55 166-226 15-74 (361)
425 KOG0316|consensus 61.0 26 0.00057 30.0 5.8 54 144-198 155-218 (307)
426 PF08438 MMR_HSR1_C: GTPase of 60.5 11 0.00024 28.1 3.2 31 67-101 1-32 (109)
427 KOG1446|consensus 59.9 17 0.00038 32.0 4.7 50 168-222 236-286 (311)
428 KOG0318|consensus 59.6 31 0.00067 32.7 6.5 56 166-224 192-248 (603)
429 TIGR03866 PQQ_ABC_repeats PQQ- 58.4 47 0.001 27.5 7.2 39 166-204 250-290 (300)
430 KOG1036|consensus 58.0 27 0.00059 30.8 5.5 48 166-220 56-103 (323)
431 COG2179 Predicted hydrolase of 57.7 40 0.00087 27.2 6.1 49 40-101 45-93 (175)
432 KOG0270|consensus 57.6 63 0.0014 30.0 8.0 76 142-224 297-386 (463)
433 KOG0315|consensus 57.1 36 0.00079 29.4 6.0 54 146-199 97-159 (311)
434 PF14655 RAB3GAP2_N: Rab3 GTPa 56.3 11 0.00023 34.9 3.0 41 173-219 76-116 (415)
435 PRK09601 GTP-binding protein Y 56.2 26 0.00055 31.9 5.3 42 61-102 199-241 (364)
436 KOG1487|consensus 56.1 11 0.00023 32.9 2.7 54 61-122 231-285 (358)
437 KOG0272|consensus 56.1 12 0.00026 34.4 3.2 52 145-196 316-377 (459)
438 KOG0286|consensus 56.0 35 0.00075 30.1 5.8 55 148-202 245-312 (343)
439 KOG0293|consensus 54.9 21 0.00046 32.9 4.5 41 157-198 306-346 (519)
440 KOG2485|consensus 54.7 32 0.00069 30.7 5.5 84 28-119 46-132 (335)
441 COG4963 CpaE Flp pilus assembl 54.7 56 0.0012 29.7 7.2 65 11-76 217-286 (366)
442 KOG1274|consensus 54.6 58 0.0013 32.9 7.7 50 144-194 118-168 (933)
443 PF07676 PD40: WD40-like Beta 54.6 21 0.00046 20.5 3.2 18 168-185 12-29 (39)
444 KOG0315|consensus 53.7 42 0.0009 29.1 5.8 42 166-207 217-258 (311)
445 KOG0278|consensus 52.9 17 0.00036 31.5 3.3 29 166-194 269-297 (334)
446 KOG2055|consensus 52.8 22 0.00048 33.1 4.4 43 154-197 335-377 (514)
447 KOG0296|consensus 52.0 46 0.00099 30.2 6.1 55 161-222 104-159 (399)
448 KOG0313|consensus 51.9 26 0.00057 31.9 4.6 52 166-225 107-158 (423)
449 TIGR00991 3a0901s02IAP34 GTP-b 51.7 33 0.00071 30.5 5.2 52 28-79 118-171 (313)
450 KOG0271|consensus 51.7 30 0.00065 31.7 4.9 53 166-223 411-463 (480)
451 KOG1954|consensus 51.3 22 0.00049 32.5 4.1 47 28-78 181-228 (532)
452 COG0523 Putative GTPases (G3E 51.3 90 0.002 27.8 8.0 72 28-109 116-192 (323)
453 cd03111 CpaE_like This protein 50.1 49 0.0011 23.9 5.2 43 28-70 64-106 (106)
454 PF08553 VID27: VID27 cytoplas 49.8 17 0.00037 36.4 3.4 41 173-218 585-625 (794)
455 PF01011 PQQ: PQQ enzyme repea 49.5 36 0.00078 19.7 3.6 27 178-204 2-29 (38)
456 PF04548 AIG1: AIG1 family; I 47.5 1.3E+02 0.0028 24.6 8.0 93 28-121 83-189 (212)
457 KOG0263|consensus 47.5 30 0.00065 34.0 4.5 66 149-220 510-586 (707)
458 KOG0263|consensus 47.2 63 0.0014 31.8 6.6 39 166-204 579-618 (707)
459 cd04170 EF-G_bact Elongation f 47.0 21 0.00045 30.5 3.2 25 93-117 241-265 (268)
460 PF00205 TPP_enzyme_M: Thiamin 46.7 44 0.00095 25.2 4.7 40 60-103 11-50 (137)
461 KOG0279|consensus 45.9 1E+02 0.0022 27.1 7.0 37 166-202 107-143 (315)
462 KOG2486|consensus 45.7 11 0.00025 33.0 1.3 56 60-115 247-313 (320)
463 KOG1524|consensus 45.7 18 0.00039 34.5 2.7 54 166-225 106-159 (737)
464 KOG1523|consensus 45.6 37 0.00079 30.3 4.4 58 160-223 97-158 (361)
465 KOG0467|consensus 45.5 38 0.00083 33.7 4.9 56 10-73 70-136 (887)
466 TIGR03348 VI_IcmF type VI secr 45.0 33 0.00072 36.0 4.8 46 28-74 201-256 (1169)
467 KOG0771|consensus 44.2 37 0.0008 31.0 4.3 56 145-202 157-224 (398)
468 cd02036 MinD Bacterial cell di 43.9 1.3E+02 0.0028 23.2 7.2 64 28-96 84-147 (179)
469 KOG0306|consensus 43.6 47 0.001 32.9 5.2 49 148-197 81-140 (888)
470 PRK13185 chlL protochlorophyll 43.2 1.6E+02 0.0034 24.9 8.1 61 28-95 140-201 (270)
471 COG2759 MIS1 Formyltetrahydrof 43.2 1E+02 0.0022 29.0 7.0 86 28-119 319-427 (554)
472 KOG0279|consensus 43.0 82 0.0018 27.7 6.0 49 149-197 167-226 (315)
473 KOG1963|consensus 42.7 50 0.0011 32.9 5.3 31 166-196 207-237 (792)
474 PF13860 FlgD_ig: FlgD Ig-like 41.7 66 0.0014 22.1 4.6 32 186-221 27-58 (81)
475 KOG0307|consensus 41.5 48 0.001 34.1 5.1 74 145-222 81-172 (1049)
476 KOG0643|consensus 41.4 1.9E+02 0.0042 25.3 8.0 39 166-204 54-93 (327)
477 PF04762 IKI3: IKI3 family; I 41.2 91 0.002 32.0 7.1 53 166-224 77-133 (928)
478 PF14783 BBS2_Mid: Ciliary BBS 40.8 1.5E+02 0.0033 22.1 8.0 63 148-221 19-90 (111)
479 KOG0973|consensus 40.8 51 0.0011 33.6 5.1 30 166-195 71-100 (942)
480 KOG2106|consensus 40.5 1.1E+02 0.0025 29.0 6.9 58 155-220 399-456 (626)
481 PF04841 Vps16_N: Vps16, N-ter 40.1 47 0.001 30.5 4.6 36 182-223 56-92 (410)
482 KOG0641|consensus 40.1 70 0.0015 27.3 5.1 41 159-199 226-266 (350)
483 TIGR00064 ftsY signal recognit 40.0 1.4E+02 0.003 25.8 7.3 70 28-111 190-261 (272)
484 PRK01742 tolB translocation pr 39.4 1.2E+02 0.0026 27.7 7.2 36 167-202 250-288 (429)
485 KOG0268|consensus 39.2 38 0.00082 30.8 3.6 52 141-194 291-345 (433)
486 PRK01742 tolB translocation pr 38.9 37 0.00081 31.1 3.7 36 169-204 376-414 (429)
487 cd02037 MRP-like MRP (Multiple 38.7 1.5E+02 0.0033 23.0 6.9 59 11-73 67-133 (169)
488 KOG0282|consensus 38.7 58 0.0013 30.5 4.8 57 142-199 278-336 (503)
489 KOG3881|consensus 38.7 1.1E+02 0.0024 28.0 6.4 56 166-221 249-314 (412)
490 PF09547 Spore_IV_A: Stage IV 38.6 1.2E+02 0.0026 28.4 6.8 70 39-114 161-233 (492)
491 PF13360 PQQ_2: PQQ-like domai 38.5 68 0.0015 26.0 5.0 54 149-203 8-64 (238)
492 PRK03629 tolB translocation pr 38.4 1.1E+02 0.0025 28.0 6.9 72 146-224 225-299 (429)
493 TIGR02800 propeller_TolB tol-p 38.3 2.9E+02 0.0062 24.6 9.4 112 106-224 132-246 (417)
494 KOG0306|consensus 37.8 97 0.0021 30.9 6.3 32 162-194 507-538 (888)
495 PF09157 TruB-C_2: Pseudouridi 37.4 25 0.00054 22.5 1.7 18 182-199 25-42 (58)
496 cd01900 YchF YchF subfamily. 37.3 46 0.001 28.9 3.8 41 61-102 195-237 (274)
497 KOG2079|consensus 37.2 92 0.002 32.3 6.2 63 157-223 124-187 (1206)
498 KOG0281|consensus 37.0 40 0.00087 30.5 3.4 63 141-205 204-277 (499)
499 cd02032 Bchl_like This family 36.4 2.3E+02 0.005 23.8 8.1 46 28-73 138-184 (267)
500 TIGR01968 minD_bact septum sit 36.3 1.4E+02 0.0029 24.8 6.6 43 28-73 133-175 (261)
No 1
>KOG0084|consensus
Probab=99.94 E-value=1.8e-26 Score=185.82 Aligned_cols=123 Identities=23% Similarity=0.467 Sum_probs=115.4
Q ss_pred ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
.++++++|+.++||||| ||||+++.+ +|+|+|+|||+ ++.||+++..|+.++.++. ..++|.+|||||+|+
T Consensus 48 ~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~Dl 126 (205)
T KOG0084|consen 48 IRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYA-SENVPKLLVGNKCDL 126 (205)
T ss_pred EEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhc-cCCCCeEEEeecccc
Confidence 47899999999999999 999999988 99999999999 9999999999999999987 367899999999999
Q ss_pred CCcccccHHHHHHHHHhCCCe-EEEEccCCCCCHHHHHHHHHHHHHhhhcccc
Q psy14042 74 ARARAVSSQDAKNLAASFKVK-FIEVSVGIHHNVDELLVGILNQIRLKRSLVQ 125 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~-~~evSA~t~~gv~elf~~i~~~l~~~~~~~~ 125 (238)
.+.+.++.++++.++.+++++ |+|+||+.+.||++.|..++..+........
T Consensus 127 ~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~~ 179 (205)
T KOG0084|consen 127 TEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGLHV 179 (205)
T ss_pred HhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhcccCC
Confidence 999999999999999999999 9999999999999999999999987765443
No 2
>KOG0098|consensus
Probab=99.94 E-value=3.4e-26 Score=182.57 Aligned_cols=122 Identities=20% Similarity=0.333 Sum_probs=114.7
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+|++.|+|+||| |+|++++.+ +|.|+|||||+ .++||..+..|+.+++++. ..+..++|+|||+||+
T Consensus 46 r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~ 124 (216)
T KOG0098|consen 46 RMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLE 124 (216)
T ss_pred eEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhh
Confidence 5689999999999999 999999988 99999999999 9999999999999999975 3789999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcccc
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQ 125 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~~ 125 (238)
..|+|+.+|+++||+++|+.|+|+||+|++||+|+|..++..+....+...
T Consensus 125 ~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~q~g~ 175 (216)
T KOG0098|consen 125 ARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRKIQDGV 175 (216)
T ss_pred ccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999988766544
No 3
>KOG0092|consensus
Probab=99.93 E-value=6.8e-26 Score=181.85 Aligned_cols=122 Identities=22% Similarity=0.361 Sum_probs=114.9
Q ss_pred CccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042 1 MNQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKID 72 (238)
Q Consensus 1 ~~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~D 72 (238)
|+|++.+++..|+|+||| |||++|.+. +|+++|+|||+ +.+||..++.|+.+|++..+ +++-+.|||||+|
T Consensus 43 ~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~D 121 (200)
T KOG0092|consen 43 LTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKAD 121 (200)
T ss_pred EEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhh
Confidence 578999999999999999 999999988 99999999999 99999999999999998764 7788899999999
Q ss_pred CCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042 73 LARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL 123 (238)
Q Consensus 73 L~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~ 123 (238)
|.+.+++..+++..+|+..|+.|+|+|||||.||+++|..|++.++.....
T Consensus 122 L~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 122 LLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQ 172 (200)
T ss_pred hhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCcccc
Confidence 999999999999999999999999999999999999999999998776544
No 4
>KOG0078|consensus
Probab=99.93 E-value=6.4e-26 Score=184.75 Aligned_cols=119 Identities=24% Similarity=0.468 Sum_probs=113.2
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
|+|++++..|++|||| |||+.++++ +|+++++|||+ ++.||+++..|+..+.++.+ .++|++|||||+|+.
T Consensus 52 kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~-~~v~~~LvGNK~D~~ 130 (207)
T KOG0078|consen 52 KTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHAS-DDVVKILVGNKCDLE 130 (207)
T ss_pred EEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCC-CCCcEEEeecccccc
Confidence 7899999999999999 999999988 99999999999 99999999999999998873 699999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
.+|+|+.+.++++|.++|++|+|+||++|.||++.|..|++.+.....
T Consensus 131 ~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~ 178 (207)
T KOG0078|consen 131 EKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQKLE 178 (207)
T ss_pred ccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999986443
No 5
>KOG2041|consensus
Probab=99.93 E-value=2.3e-27 Score=218.92 Aligned_cols=166 Identities=41% Similarity=0.654 Sum_probs=147.6
Q ss_pred CccEEEECCeEEEEEEEeCCCcccccCCceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc
Q psy14042 1 MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS 80 (238)
Q Consensus 1 ~~k~i~~~~~~v~l~iWDe~~~~l~~~~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~ 80 (238)
|||+++.|+.+|++..|+|.+++|++++.+|+|+||.+..+| |++++. +++ ||+
T Consensus 63 mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgs------W~EEMi-----NnR------nKS--------- 116 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGS------WCEEMI-----NNR------NKS--------- 116 (1189)
T ss_pred hhhhhccCcceEEEEEeccccccccccCCCceEEEEeeeccc------HHHHHh-----hCc------Ccc---------
Confidence 899999999999999999999999999999999999995554 455543 445 888
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcccccCCCCCCCcCccCcceeecceEEeecccCceeeec
Q psy14042 81 SQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGGAQAAAPWKSNTTLVRASAVIVGSVDGNRIWGK 160 (238)
Q Consensus 81 ~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rv~g~ 160 (238)
+.+...|+.+.-..+|+ |++|.+|||+++|+|+|||
T Consensus 117 -----------------vV~SmsWn~dG~kIcIv---------------------------YeDGavIVGsvdGNRIwgK 152 (1189)
T KOG2041|consen 117 -----------------VVVSMSWNLDGTKICIV---------------------------YEDGAVIVGSVDGNRIWGK 152 (1189)
T ss_pred -----------------EEEEEEEcCCCcEEEEE---------------------------EccCCEEEEeeccceecch
Confidence 67777788888888888 9999999999999999999
Q ss_pred ccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCC-CC-----ceeEEEEEeecCCCc--ccccccc
Q psy14042 161 EFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPG-SE-----MGEIAALKYYLNRTS--ARSLNKF 232 (238)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~-~~-----~~~i~~~~w~~~~~~--~~~~~~~ 232 (238)
+++...+..+.|++|...++|+.++||+|+||++|+|..||.+.|..+ +. ..+|++++||.++.+ .+++|+|
T Consensus 153 eLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~l 232 (1189)
T KOG2041|consen 153 ELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRL 232 (1189)
T ss_pred hcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEE
Confidence 999888899999999999999999999999999999999999999655 33 345999999999885 7899999
Q ss_pred cCCC
Q psy14042 233 EGCP 236 (238)
Q Consensus 233 ~~~~ 236 (238)
++|=
T Consensus 233 avcy 236 (1189)
T KOG2041|consen 233 AVCY 236 (1189)
T ss_pred EEEE
Confidence 9993
No 6
>KOG0094|consensus
Probab=99.92 E-value=5.3e-25 Score=177.02 Aligned_cols=121 Identities=23% Similarity=0.336 Sum_probs=114.1
Q ss_pred ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
++++.+.+.+|+||+|| ||||+|.++ +++++|+|||+ ++.||++..+|++.++++.+..++-++|||||.||
T Consensus 61 skt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL 140 (221)
T KOG0094|consen 61 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDL 140 (221)
T ss_pred EEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccc
Confidence 57889999999999999 999999998 99999999999 99999999999999999887667889999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
.++++++.++++..|++++..|+++||++|.||.++|..|+..+++...
T Consensus 141 ~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 141 SDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred cchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence 9999999999999999999999999999999999999999988876543
No 7
>KOG0083|consensus
Probab=99.91 E-value=1.2e-24 Score=165.33 Aligned_cols=119 Identities=26% Similarity=0.479 Sum_probs=111.8
Q ss_pred ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
||.|..+++.|++|||| ||||+++.. +||+.+++||+ ++.||++.+.|+.+|.+|. ...+.+.|+|||+|+
T Consensus 37 nkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~ 115 (192)
T KOG0083|consen 37 NKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDL 115 (192)
T ss_pred cceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHH-HhhHhHhhhcccccc
Confidence 68899999999999999 999999987 99999999999 9999999999999999886 367789999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
..++.+..++++++++++++||.|+||+||.||+..|-.|++.+...+
T Consensus 116 a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~~ 163 (192)
T KOG0083|consen 116 AHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKLK 163 (192)
T ss_pred chhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999998886544
No 8
>KOG0080|consensus
Probab=99.90 E-value=7.6e-24 Score=165.43 Aligned_cols=121 Identities=23% Similarity=0.367 Sum_probs=115.4
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
|.+.++|..++|-||| ||||.|+++ +|.++|+|||+ .+++|.++..|.+++.-|...+++-.++||||+|.+
T Consensus 51 k~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 51 KVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKE 130 (209)
T ss_pred EEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccch
Confidence 6789999999999999 999999999 99999999999 999999999999999999877888999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL 123 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~ 123 (238)
.+|.|+.+++..+|+++++-|+|+||++.+||+..|+.++..|.+.+..
T Consensus 131 s~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp~l 179 (209)
T KOG0080|consen 131 SERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIETPSL 179 (209)
T ss_pred hcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999999999999999999999999999877643
No 9
>KOG0087|consensus
Probab=99.90 E-value=1.7e-23 Score=170.27 Aligned_cols=122 Identities=26% Similarity=0.392 Sum_probs=114.3
Q ss_pred ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
++++.++++.|+.|||| ||||.++++ +|.|+++|||+ .+.+|+++..|+.+|+.+.+ ++++++|||||+||
T Consensus 53 t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL 131 (222)
T KOG0087|consen 53 TRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDL 131 (222)
T ss_pred eeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhh
Confidence 46889999999999999 999999988 99999999999 99999999999999998764 79999999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhccc
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLV 124 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~ 124 (238)
...+.++.+++..+|+..+..|+|+||..+.||+.+|..++..|...-...
T Consensus 132 ~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~k 182 (222)
T KOG0087|consen 132 NHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKIVSKK 182 (222)
T ss_pred hhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987765443
No 10
>KOG0079|consensus
Probab=99.90 E-value=5.9e-24 Score=163.98 Aligned_cols=117 Identities=23% Similarity=0.444 Sum_probs=111.9
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+++.++|..|+|+||| |+|+.+++. +.+++++|||+ +.+||.+++.|++++++.. +..|-+|||||.|++
T Consensus 48 rTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~ 125 (198)
T KOG0079|consen 48 RTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDP 125 (198)
T ss_pred EEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCc
Confidence 6889999999999999 999999877 99999999999 9999999999999999887 689999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
+.+.+..++++.+|...|+.+||+||+...|++.+|.+|.+++...+
T Consensus 126 ~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 126 ERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred cceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988766
No 11
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.90 E-value=5.8e-23 Score=168.93 Aligned_cols=118 Identities=20% Similarity=0.389 Sum_probs=108.5
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+++.+++..++|++|| ++|+.++.. ++|++|+|||+ ++.||+.+..|+.++.++. ++.|+||||||+||.
T Consensus 46 ~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~ 123 (189)
T cd04121 46 TTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLA 123 (189)
T ss_pred EEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccch
Confidence 5678899999999999 889888765 99999999999 9999999999999998765 689999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
..+.++.++++.+++..+++|++|||++|.||+++|..+++.+.....
T Consensus 124 ~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~ 171 (189)
T cd04121 124 FKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRHG 171 (189)
T ss_pred hccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC
Confidence 888899999999999999999999999999999999999998876544
No 12
>KOG0093|consensus
Probab=99.90 E-value=1.3e-23 Score=161.97 Aligned_cols=120 Identities=22% Similarity=0.421 Sum_probs=111.6
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
|+|--+.+.|++|||| |+||.++.. +++++|++||+ +.+||..++.|...|+.+. ..+.|+|||||||||+
T Consensus 61 KTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktys-w~naqvilvgnKCDmd 139 (193)
T KOG0093|consen 61 KTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYS-WDNAQVILVGNKCDMD 139 (193)
T ss_pred eEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeee-ccCceEEEEecccCCc
Confidence 5666678899999999 999999987 99999999999 9999999999999999875 4899999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL 123 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~ 123 (238)
++|.++.+.++.++.++|+.|||+|||.+.||+++|..++..+-.+..+
T Consensus 140 ~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kmse 188 (193)
T KOG0093|consen 140 SERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDIICDKMSE 188 (193)
T ss_pred cceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999888766543
No 13
>KOG0394|consensus
Probab=99.90 E-value=6.8e-23 Score=163.38 Aligned_cols=122 Identities=23% Similarity=0.333 Sum_probs=111.5
Q ss_pred CccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC---CCCCEEEEEE
Q psy14042 1 MNQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL---RTRPAIIVAN 69 (238)
Q Consensus 1 ~~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~---~~~piilVgN 69 (238)
++|.+.+|+..+.||||| |||++|... +||++++|||+ ++.||+.+..|.+++..+..+ ..-|+||+||
T Consensus 47 ltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGN 126 (210)
T KOG0394|consen 47 LTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGN 126 (210)
T ss_pred eeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcc
Confidence 589999999999999999 999999977 99999999999 999999999999998877543 4679999999
Q ss_pred eccCCC--cccccHHHHHHHHHhC-CCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 70 KIDLAR--ARAVSSQDAKNLAASF-KVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 70 K~DL~~--~~~v~~~~~~~~~~~~-~~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
|+|+.. .++++...+..+++.. ++||||+|||...||+++|..+++.+.....
T Consensus 127 KiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 127 KIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred cccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhccc
Confidence 999975 3899999999999886 4899999999999999999999999887764
No 14
>KOG0088|consensus
Probab=99.90 E-value=2.6e-23 Score=162.13 Aligned_cols=122 Identities=24% Similarity=0.356 Sum_probs=114.2
Q ss_pred ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+|++.+.+....|.||| |+|+.|.+. +++++++|||+ |++||+.++.|..+++... .+.+-+++||||+||
T Consensus 52 ~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~ml-Gnei~l~IVGNKiDL 130 (218)
T KOG0088|consen 52 NKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTML-GNEIELLIVGNKIDL 130 (218)
T ss_pred hcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHh-CCeeEEEEecCcccH
Confidence 68889999999999999 999999988 99999999999 9999999999999998865 378889999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhccc
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLV 124 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~ 124 (238)
++++.++.++++..|+..|..|+++||+.+.||.++|..+...+.++....
T Consensus 131 EeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~ 181 (218)
T KOG0088|consen 131 EEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEHSSQR 181 (218)
T ss_pred HHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999888876543
No 15
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.89 E-value=4.6e-22 Score=165.24 Aligned_cols=117 Identities=24% Similarity=0.461 Sum_probs=106.5
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+++.+++..++++||| ++|+.++.. ++|++|+|||+ +++||+.+..|+..+.++. ..+.|++|||||+||.
T Consensus 40 ~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~-~~~~piilVgNK~DL~ 118 (202)
T cd04120 40 KTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCE 118 (202)
T ss_pred EEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccc
Confidence 5688899999999999 899998876 99999999999 9999999999999987764 3679999999999999
Q ss_pred CcccccHHHHHHHHHhC-CCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 75 RARAVSSQDAKNLAASF-KVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~-~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
..+++..+++.+++++. ++.|++|||++|.||+++|.++++.+...
T Consensus 119 ~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 119 TDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 165 (202)
T ss_pred cccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 88899999999999885 89999999999999999999999988654
No 16
>KOG0086|consensus
Probab=99.88 E-value=1e-22 Score=158.01 Aligned_cols=124 Identities=21% Similarity=0.283 Sum_probs=114.7
Q ss_pred ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
++-|.+.++.|+||||| |+||+++.+ +|.++++|||+ +++||+.+..|+..++... ++++-++|+|||.||
T Consensus 48 SrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lA-s~nIvviL~GnKkDL 126 (214)
T KOG0086|consen 48 SRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLA-SPNIVVILCGNKKDL 126 (214)
T ss_pred ceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhC-CCcEEEEEeCChhhc
Confidence 35678999999999999 999999988 99999999999 9999999999999998765 478889999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhccccc
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQT 126 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~~~ 126 (238)
..+++++..++.+++.+..+.+.|+||+||+||+|.|-..++.+..+.+....
T Consensus 127 ~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~kIE~GEl 179 (214)
T KOG0086|consen 127 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIESGEL 179 (214)
T ss_pred ChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999887765543
No 17
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.88 E-value=7.4e-22 Score=160.58 Aligned_cols=113 Identities=19% Similarity=0.400 Sum_probs=101.8
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..++++||| ++|+.++.. +++++|+|||+ ++.||+++ +.|+.++++.. .+.|++|||||+||
T Consensus 40 ~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl 117 (176)
T cd04133 40 ANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDL 117 (176)
T ss_pred EEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhh
Confidence 4577899999999999 899988876 99999999999 99999998 78999998765 57999999999999
Q ss_pred CCcc----------cccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 74 ARAR----------AVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 74 ~~~~----------~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l 117 (238)
.+++ .++.+++..+++..++ +|+||||++|.||+++|..+++.+
T Consensus 118 ~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 118 RDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred ccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 6543 4888999999999998 699999999999999999999876
No 18
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.88 E-value=7.5e-22 Score=161.35 Aligned_cols=113 Identities=18% Similarity=0.260 Sum_probs=101.8
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..++++||| ++|+.+++. ++|++|+|||+ ++.||+++ ..|+.++.++. ++.|++|||||+||
T Consensus 44 ~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL 121 (182)
T cd04172 44 ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDL 121 (182)
T ss_pred EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhh
Confidence 5678899999999999 788888766 99999999999 99999998 89999998875 67999999999999
Q ss_pred CC------------cccccHHHHHHHHHhCCC-eEEEEccCCCCC-HHHHHHHHHHHH
Q psy14042 74 AR------------ARAVSSQDAKNLAASFKV-KFIEVSVGIHHN-VDELLVGILNQI 117 (238)
Q Consensus 74 ~~------------~~~v~~~~~~~~~~~~~~-~~~evSA~t~~g-v~elf~~i~~~l 117 (238)
.. .+.++.++++++|++.++ +|+||||++|.| |+++|..+++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 122 RTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 179 (182)
T ss_pred hcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHH
Confidence 64 356899999999999996 899999999998 999999999754
No 19
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.87 E-value=2.8e-21 Score=156.21 Aligned_cols=119 Identities=23% Similarity=0.406 Sum_probs=107.2
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.++||| ++|+.++.. ++|++|+|||+ ++.||+.+..|...+.+.....++|++|||||+|+.
T Consensus 41 ~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 41 QQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE 120 (172)
T ss_pred EEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence 4678899999999999 788888866 99999999999 999999999999888776544689999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
..+.++.+++..+++..+++|++|||++|.||+++|.++++.+....
T Consensus 121 ~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 167 (172)
T cd04141 121 SQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRRKE 167 (172)
T ss_pred hcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999998887543
No 20
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=3.6e-21 Score=156.69 Aligned_cols=113 Identities=15% Similarity=0.231 Sum_probs=100.6
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..++++||| ++|+.+.+. ++|++|+|||+ +++||+++ ..|+.+++++. ++.|++|||||+||
T Consensus 40 ~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL 117 (178)
T cd04131 40 ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDL 117 (178)
T ss_pred EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhh
Confidence 4678899999999999 788877766 99999999999 99999996 89999998876 68999999999999
Q ss_pred CC------------cccccHHHHHHHHHhCCC-eEEEEccCCCCC-HHHHHHHHHHHH
Q psy14042 74 AR------------ARAVSSQDAKNLAASFKV-KFIEVSVGIHHN-VDELLVGILNQI 117 (238)
Q Consensus 74 ~~------------~~~v~~~~~~~~~~~~~~-~~~evSA~t~~g-v~elf~~i~~~l 117 (238)
.. .+.++.+++.+++++.++ +|+||||++|+| |+++|..+++..
T Consensus 118 ~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~ 175 (178)
T cd04131 118 RTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMAC 175 (178)
T ss_pred hcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHH
Confidence 64 246889999999999997 899999999995 999999999854
No 21
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=4.8e-21 Score=162.18 Aligned_cols=117 Identities=12% Similarity=0.210 Sum_probs=104.2
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+.|+||| ++|+.+++. ++|++|+|||+ +++||+.+ ..|+.++.++. ++.|++|||||+||
T Consensus 52 ~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL 129 (232)
T cd04174 52 AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDL 129 (232)
T ss_pred EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccc
Confidence 4578899999999999 888888765 99999999999 99999985 89999998765 57899999999999
Q ss_pred CC------------cccccHHHHHHHHHhCCC-eEEEEccCCCC-CHHHHHHHHHHHHHhhh
Q psy14042 74 AR------------ARAVSSQDAKNLAASFKV-KFIEVSVGIHH-NVDELLVGILNQIRLKR 121 (238)
Q Consensus 74 ~~------------~~~v~~~~~~~~~~~~~~-~~~evSA~t~~-gv~elf~~i~~~l~~~~ 121 (238)
.. .+.++.++++++|++.++ .|+||||++|. ||+++|..++..+.+..
T Consensus 130 ~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~ 191 (232)
T cd04174 130 RTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNKL 191 (232)
T ss_pred ccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhc
Confidence 64 367899999999999998 69999999998 89999999999887643
No 22
>KOG0091|consensus
Probab=99.86 E-value=2e-21 Score=152.27 Aligned_cols=116 Identities=24% Similarity=0.357 Sum_probs=107.1
Q ss_pred CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCC-CCCEEEEEEeccCCCccc
Q psy14042 8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLR-TRPAIIVANKIDLARARA 78 (238)
Q Consensus 8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~-~~piilVgNK~DL~~~~~ 78 (238)
+|..|+||+|| |+||+++.+ ++-++++|||+ ++.||+.+..|+.+...+...+ .+-++|||.|+||...++
T Consensus 54 pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq 133 (213)
T KOG0091|consen 54 PGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ 133 (213)
T ss_pred CCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcc
Confidence 58899999999 999999988 99999999999 9999999999999998877644 444689999999999999
Q ss_pred ccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042 79 VSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL 123 (238)
Q Consensus 79 v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~ 123 (238)
|..++++++|+..|..|+|+||++|.||++.|..|++.+......
T Consensus 134 Vt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 134 VTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred ccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999876544
No 23
>KOG0081|consensus
Probab=99.86 E-value=8e-22 Score=153.90 Aligned_cols=116 Identities=22% Similarity=0.431 Sum_probs=106.6
Q ss_pred CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc
Q psy14042 8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV 79 (238)
Q Consensus 8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v 79 (238)
.+..|.||+|| ||||+|+.. +|-+++++||+ ++.||-+++.|+.+++.+.-..+.-+||+|||+||++.++|
T Consensus 63 r~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~V 142 (219)
T KOG0081|consen 63 RGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVV 142 (219)
T ss_pred cceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhh
Confidence 35789999999 999999988 99999999999 99999999999999987654467779999999999999999
Q ss_pred cHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042 80 SSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL 123 (238)
Q Consensus 80 ~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~ 123 (238)
+++++.+++.++|+||||+||.+|.||++..+.+...+.+..+.
T Consensus 143 s~~qa~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 143 SEDQAAALADKYGLPYFETSACTGTNVEKAVELLLDLVMKRIEQ 186 (219)
T ss_pred hHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888766543
No 24
>PTZ00099 rab6; Provisional
Probab=99.86 E-value=1e-20 Score=153.92 Aligned_cols=118 Identities=24% Similarity=0.369 Sum_probs=106.3
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..++++||| ++|+.++.. +||++|+|||+ ++.||+.+..|+.++.+.. ..+.|++|||||+||.
T Consensus 20 ~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~piilVgNK~DL~ 98 (176)
T PTZ00099 20 KTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVIIALVGNKTDLG 98 (176)
T ss_pred EEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccc
Confidence 5678899999999999 888887765 99999999999 9999999999999998764 2578999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
..+.+..+++..+++.+++.|+++||++|.||+++|.+|++.+.+.+
T Consensus 99 ~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 99 DLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 77778888999999999999999999999999999999999987654
No 25
>KOG0095|consensus
Probab=99.86 E-value=4.7e-22 Score=153.80 Aligned_cols=121 Identities=24% Similarity=0.420 Sum_probs=111.8
Q ss_pred CccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042 1 MNQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKID 72 (238)
Q Consensus 1 ~~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~D 72 (238)
|-|+++++|..|+|+||| ||||+++.+ .|+++|+|||+ ...||+.+..|+.+|.+|.. +.+-.||||||+|
T Consensus 45 miktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d 123 (213)
T KOG0095|consen 45 MIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKID 123 (213)
T ss_pred EEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccc
Confidence 679999999999999999 999999988 99999999999 89999999999999999872 5666899999999
Q ss_pred CCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 73 LARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 73 L~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
+.+.++++...++++++....-|+|+||+...||+.+|..++..+....+
T Consensus 124 ~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli~~ar 173 (213)
T KOG0095|consen 124 LADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLISEAR 173 (213)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988889999999999999999999987766543
No 26
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.86 E-value=5.1e-21 Score=157.27 Aligned_cols=115 Identities=21% Similarity=0.337 Sum_probs=101.3
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+.++||| ++|+.+++. ++|++|+|||+ ++.||+.+. .|+.++.+.. .++|++|||||+||
T Consensus 42 ~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL 119 (191)
T cd01875 42 AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC--PNVPILLVGTKKDL 119 (191)
T ss_pred EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEeChhh
Confidence 4567889999999999 899988866 99999999999 999999996 6999887654 68999999999999
Q ss_pred CCc------------ccccHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 74 ARA------------RAVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 74 ~~~------------~~v~~~~~~~~~~~~~-~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
.+. +.+..++++.+++..+ ++|++|||++|.||+++|..+++.+..
T Consensus 120 ~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 120 RNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred hcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 754 2467788999999998 599999999999999999999988854
No 27
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.85 E-value=1.2e-20 Score=155.93 Aligned_cols=109 Identities=15% Similarity=0.245 Sum_probs=94.6
Q ss_pred EECCeEEEEEEEe----C-CCcccccCCceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccCCC---
Q psy14042 6 QGHSGKVRAIIWN----E-QYEKLTSSDETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDLAR--- 75 (238)
Q Consensus 6 ~~~~~~v~l~iWD----e-~~~~l~~~~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL~~--- 75 (238)
.+++..++|+||| + .++.+...++|++|+|||+ ++.||+.+. .|+.++++.. .+.|++|||||+||..
T Consensus 60 ~~~~~~v~l~iwDTaG~~~~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~ 137 (195)
T cd01873 60 VVDGVSVSLRLWDTFGDHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADL 137 (195)
T ss_pred eeCCEEEEEEEEeCCCChhhhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccc
Confidence 5789999999999 2 2333333399999999999 999999997 6999998765 5789999999999964
Q ss_pred ----------------cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 76 ----------------ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 76 ----------------~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
.+.++.++++.+|++.+++|+||||++|.||+++|..++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 138 DEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred chhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 47889999999999999999999999999999999999864
No 28
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.84 E-value=6e-20 Score=150.53 Aligned_cols=123 Identities=24% Similarity=0.358 Sum_probs=107.6
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC--CCCCCEEEEEEecc
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY--LRTRPAIIVANKID 72 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~--~~~~piilVgNK~D 72 (238)
+.+.+++..+.++||| ++|+.++.. ++|++|+|||+ ++.||+.+..|+..+..... ..+.|++|||||+|
T Consensus 38 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~D 117 (190)
T cd04144 38 KQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCD 117 (190)
T ss_pred EEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChh
Confidence 4567888899999999 788887765 99999999999 99999999999999876543 25789999999999
Q ss_pred CCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcccc
Q psy14042 73 LARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQ 125 (238)
Q Consensus 73 L~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~~ 125 (238)
+...+.+...++..+++..+++|+++||++|.|++++|..+++.+........
T Consensus 118 l~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~~~~ 170 (190)
T cd04144 118 KVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQ 170 (190)
T ss_pred ccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhcccC
Confidence 98878888888888999999999999999999999999999998877665543
No 29
>KOG0097|consensus
Probab=99.84 E-value=9.8e-21 Score=145.36 Aligned_cols=122 Identities=20% Similarity=0.341 Sum_probs=112.0
Q ss_pred ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
++-|++.|+.++|+||| ||||.++.+ ++.++++|||+ .+.++..+..|+...+... .++..++|+|||.||
T Consensus 50 triievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~lt-npnt~i~lignkadl 128 (215)
T KOG0097|consen 50 TRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADL 128 (215)
T ss_pred eeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhh
Confidence 35689999999999999 999999988 99999999999 9999999999999987654 267789999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhccc
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLV 124 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~ 124 (238)
+.++.+..+++++++++.|+.|+++||++|+||++.|-..++++..+....
T Consensus 129 e~qrdv~yeeak~faeengl~fle~saktg~nvedafle~akkiyqniqdg 179 (215)
T KOG0097|consen 129 ESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIYQNIQDG 179 (215)
T ss_pred hhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHHHhhhcC
Confidence 999999999999999999999999999999999999999999998776543
No 30
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.84 E-value=4.2e-20 Score=147.69 Aligned_cols=116 Identities=21% Similarity=0.379 Sum_probs=103.5
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+++++|| ++|+.++.. +++++|+|||+ ++.+|+.+..|+.++.... ..+.|+++||||+|+.
T Consensus 42 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~ 120 (166)
T cd04122 42 RIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLE 120 (166)
T ss_pred EEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccc
Confidence 4567888999999999 777777655 99999999999 9999999999999987654 2678999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
..+.+..+++.++++..+++|+++||++|.|++++|..+++.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 121 AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred cccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 888888899999999999999999999999999999999987743
No 31
>KOG0395|consensus
Probab=99.84 E-value=7.3e-20 Score=151.23 Aligned_cols=121 Identities=28% Similarity=0.429 Sum_probs=111.0
Q ss_pred ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+|.+.+++..+.|+|+| +.|..+... +++++++||++ |+.||+.+..++..|.+......+|++|||||+||
T Consensus 41 ~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl 120 (196)
T KOG0395|consen 41 RKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDL 120 (196)
T ss_pred eEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccc
Confidence 57889999999999999 677777665 89999999999 99999999999999976665678999999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
...++++.++++.++..++++|+|+||+.+.+++++|..|++.+.....
T Consensus 121 ~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~~~ 169 (196)
T KOG0395|consen 121 ERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRLPRE 169 (196)
T ss_pred hhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999987443
No 32
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.84 E-value=6.3e-20 Score=148.73 Aligned_cols=112 Identities=16% Similarity=0.314 Sum_probs=98.0
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+++.+++..++++||| ++|+.++.. ++|++|+|||+ +++||+.+. .|+.++.+.. .++|++|||||+|+
T Consensus 40 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl 117 (175)
T cd01874 40 VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDL 117 (175)
T ss_pred EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhh
Confidence 4567889999999999 888877765 99999999999 999999996 5999987754 57999999999999
Q ss_pred CCc------------ccccHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 74 ARA------------RAVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 74 ~~~------------~~v~~~~~~~~~~~~~-~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
... +.+..+++++++++.+ +.|++|||++|.|++++|+.++..
T Consensus 118 ~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 118 RDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred hhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 643 5678889999999887 689999999999999999999864
No 33
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.83 E-value=6.3e-20 Score=146.40 Aligned_cols=113 Identities=24% Similarity=0.430 Sum_probs=101.6
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+++.+++..+.++||| ++|..++.. ++|++++|||+ ++.||+.+..|+.++.+.. ..+.|+++||||+||.
T Consensus 40 ~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 40 KTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEE 118 (161)
T ss_pred EEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccc
Confidence 4677888899999999 778777655 99999999999 9999999999999998764 3579999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
..+.+..+++..+++..+++|+++||++|.|++++|.+|++.
T Consensus 119 ~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 119 QKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 888888999999999999999999999999999999999854
No 34
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.83 E-value=1.1e-19 Score=143.93 Aligned_cols=115 Identities=23% Similarity=0.388 Sum_probs=103.0
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+++.+++..+.++||| ++|+.++.. ++|++++|||+ ++.+|+.+..|+..+.+.....+.|+++|+||+|+.
T Consensus 40 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (163)
T cd04136 40 KQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE 119 (163)
T ss_pred EEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 5678899999999999 888888765 99999999999 999999999999999877545689999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
..+.+..+++..+++.++.+++++||++|.|++++|..+++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 120 DERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred ccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 7777888888888888889999999999999999999998654
No 35
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.83 E-value=9.3e-20 Score=145.51 Aligned_cols=114 Identities=17% Similarity=0.219 Sum_probs=96.5
Q ss_pred cEEEECCeEEEEEEEeCCC--cccccCCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC--Ccc
Q psy14042 3 QSLQGHSGKVRAIIWNEQY--EKLTSSDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA--RAR 77 (238)
Q Consensus 3 k~i~~~~~~v~l~iWDe~~--~~l~~~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~--~~~ 77 (238)
+++.+++..+.++|||..- +.....++|++++|||+ ++.||+.+..|+.++.+.....+.|++|||||+||. ..+
T Consensus 38 ~~i~~~~~~~~l~i~D~~g~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~ 117 (158)
T cd04103 38 KEVLVDGQSHLLLIRDEGGAPDAQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPR 117 (158)
T ss_pred EEEEECCEEEEEEEEECCCCCchhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCc
Confidence 5688999999999999111 11112289999999999 999999999999999887655779999999999995 467
Q ss_pred cccHHHHHHHHHhC-CCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 78 AVSSQDAKNLAASF-KVKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 78 ~v~~~~~~~~~~~~-~~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
.++.+++++++++. +++|+||||++|.||+++|..+++.
T Consensus 118 ~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 118 VIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred ccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 88888999999876 5899999999999999999999854
No 36
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.83 E-value=1.2e-19 Score=144.53 Aligned_cols=116 Identities=22% Similarity=0.389 Sum_probs=104.3
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.++||| ++|+.++.. ++|++++|||+ ++.+|+.+..|...+.+.....+.|++|||||+|+.
T Consensus 40 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (164)
T cd04175 40 KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119 (164)
T ss_pred EEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch
Confidence 5677889999999999 888888876 99999999999 999999999999999876555789999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
..+.+..+++..+++..+++|+++||++|.|++++|.++++.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 120 DERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred hccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence 88788888888888889999999999999999999999997663
No 37
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.83 E-value=1e-19 Score=150.90 Aligned_cols=115 Identities=16% Similarity=0.300 Sum_probs=100.1
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..++++||| ++|+.++.. +++++|+|||+ ++.||+.+..|+.++.+.. .++|++|||||+||.
T Consensus 35 ~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~ 112 (200)
T smart00176 35 LVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVK 112 (200)
T ss_pred EEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccc
Confidence 4567788999999999 889988865 99999999999 9999999999999998865 689999999999996
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
. +.+..+. ..+++..+++|++|||++|.||+++|.+|++.+....
T Consensus 113 ~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~ 157 (200)
T smart00176 113 D-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 157 (200)
T ss_pred c-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcc
Confidence 4 3455444 3677888999999999999999999999999987653
No 38
>PTZ00369 Ras-like protein; Provisional
Probab=99.83 E-value=1.6e-19 Score=147.92 Aligned_cols=120 Identities=24% Similarity=0.340 Sum_probs=107.3
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+++.+++..+.++||| ++|+.++.. +++++|+|||+ ++++|+.+..|+..+.+.....+.|+++|+||+|+.
T Consensus 44 ~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 44 KQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD 123 (189)
T ss_pred EEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 5678899999999999 888888765 99999999999 999999999999999876544689999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
..+.+..+++..+++.++++|+++||++|.|++++|.+|++.+....+
T Consensus 124 ~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~ 171 (189)
T PTZ00369 124 SERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLK 171 (189)
T ss_pred cccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 777788888888888889999999999999999999999998876543
No 39
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.83 E-value=1e-19 Score=144.40 Aligned_cols=116 Identities=25% Similarity=0.426 Sum_probs=105.9
Q ss_pred ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
.+++.+++..+.++||| ++|..+... ++|++|+|||+ +++||+.+..|++.+..+.. .+.|++|||||+|+
T Consensus 38 ~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~ 116 (162)
T PF00071_consen 38 SKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDL 116 (162)
T ss_dssp EEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTG
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccceeeeccccc
Confidence 36788899999999999 677665544 99999999999 99999999999999998873 47999999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
...++++.+++++++++++++|+++||+++.||.++|..+++.+.
T Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 117 SDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp GGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 998999999999999999999999999999999999999998874
No 40
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.83 E-value=2.4e-19 Score=146.97 Aligned_cols=117 Identities=20% Similarity=0.321 Sum_probs=99.7
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+.++||| ++|+.++.. +++++|+|||+ +++||+.+. .|+..+.... .+.|++|||||+||
T Consensus 39 ~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl 116 (189)
T cd04134 39 HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC--PGVKLVLVALKCDL 116 (189)
T ss_pred EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhh
Confidence 4566788899999999 788877765 89999999999 999999996 6999998754 68999999999999
Q ss_pred CCcc------------cccHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 74 ARAR------------AVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 74 ~~~~------------~v~~~~~~~~~~~~~-~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
...+ .+..+++..+++..+ ++|++|||++|.|++++|.+|++.+....
T Consensus 117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 117 REARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALNVR 177 (189)
T ss_pred ccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhccc
Confidence 7543 356677888888876 78999999999999999999998886443
No 41
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=2.5e-19 Score=148.07 Aligned_cols=122 Identities=19% Similarity=0.280 Sum_probs=106.2
Q ss_pred cEEEEC-CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC---CCCCCEEEEEEe
Q psy14042 3 QSLQGH-SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY---LRTRPAIIVANK 70 (238)
Q Consensus 3 k~i~~~-~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~---~~~~piilVgNK 70 (238)
+.+.++ +..+.+++|| ++|+.++.. +++++|+|||+ ++++|+.+..|+.++..... ..++|++|||||
T Consensus 40 ~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK 119 (201)
T cd04107 40 KVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANK 119 (201)
T ss_pred EEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEEC
Confidence 456666 7899999999 888888765 99999999999 99999999999999876421 267899999999
Q ss_pred ccCCCcccccHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHHHHHHhhhccc
Q psy14042 71 IDLARARAVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQIRLKRSLV 124 (238)
Q Consensus 71 ~DL~~~~~v~~~~~~~~~~~~~-~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~ 124 (238)
+||...+.+..+++.++++..+ .+|+++||++|.|++++|.+|++.+....+..
T Consensus 120 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~~~~ 174 (201)
T cd04107 120 CDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILANDKNL 174 (201)
T ss_pred CCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhchhh
Confidence 9998777888899999999998 68999999999999999999999998765443
No 42
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.82 E-value=2.4e-19 Score=145.24 Aligned_cols=112 Identities=17% Similarity=0.319 Sum_probs=97.5
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..++++||| ++|+.++.. ++|++|+|||+ +++||+.+. .|+..+.... .+.|++|||||+||
T Consensus 40 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilvgnK~Dl 117 (174)
T cd01871 40 ANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDL 117 (174)
T ss_pred EEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhh
Confidence 4677889999999999 778777765 99999999999 999999995 6998887654 58999999999999
Q ss_pred CCc------------ccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHH
Q psy14042 74 ARA------------RAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 74 ~~~------------~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~ 116 (238)
... +.++.+++..+++.++. +|+||||++|.|++++|+.+++.
T Consensus 118 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 118 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred ccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 643 35788899999999985 99999999999999999999853
No 43
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.82 E-value=3.2e-19 Score=141.78 Aligned_cols=115 Identities=25% Similarity=0.405 Sum_probs=102.5
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+++.+++..+.++||| ++|+.++.. ++|++|+|||+ ++.||+++..|+..+.+.....+.|+++||||+|+.
T Consensus 40 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 40 KEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred EEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 4677889999999999 889888876 99999999999 999999999999999876544789999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
..+.+...+...+++..+++++++||++|.|++++|..+++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 120 SEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred hcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 7777777778888888899999999999999999999998654
No 44
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.82 E-value=3.2e-19 Score=150.17 Aligned_cols=117 Identities=14% Similarity=0.208 Sum_probs=100.4
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+.|+||| ++|+.+++. ++|++|+|||+ +++||+.+ ..|..++.... .+.|+||||||+||
T Consensus 40 ~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~--~~~piiLVgnK~DL 117 (222)
T cd04173 40 ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC--PNAKVVLVGCKLDM 117 (222)
T ss_pred EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEECccc
Confidence 4678899999999999 778777765 99999999999 99999999 57888876654 68999999999999
Q ss_pred CCc------------ccccHHHHHHHHHhCCC-eEEEEccCCCCC-HHHHHHHHHHHHHhhh
Q psy14042 74 ARA------------RAVSSQDAKNLAASFKV-KFIEVSVGIHHN-VDELLVGILNQIRLKR 121 (238)
Q Consensus 74 ~~~------------~~v~~~~~~~~~~~~~~-~~~evSA~t~~g-v~elf~~i~~~l~~~~ 121 (238)
... ..++.+++..++++.++ +|+||||+++.+ |+++|..++.......
T Consensus 118 ~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 118 RTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRG 179 (222)
T ss_pred ccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhcc
Confidence 642 13778899999999995 899999999985 9999999998775543
No 45
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.81 E-value=2.8e-19 Score=144.49 Aligned_cols=111 Identities=24% Similarity=0.487 Sum_probs=99.7
Q ss_pred CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc
Q psy14042 9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS 80 (238)
Q Consensus 9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~ 80 (238)
+..+.++||| ++|+.++.. ++|++|+|||+ +++||.++..|+.++.......+.|+++||||+|+...+.++
T Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~ 139 (180)
T cd04127 60 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVS 139 (180)
T ss_pred CCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccC
Confidence 5679999999 777777665 99999999999 999999999999999876544678999999999998888888
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 81 SQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 81 ~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
.+++..++++.+++++++||++|.|++++|..|++.+.+
T Consensus 140 ~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 140 EEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 889999999999999999999999999999999987754
No 46
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.81 E-value=4.1e-19 Score=144.99 Aligned_cols=117 Identities=16% Similarity=0.248 Sum_probs=98.7
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+++.+++..+.++||| ++|+.++.. ++|++++|||+ ++.||+++..|+.++.+... ...| +|||||+||.
T Consensus 40 ~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 40 KTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLF 117 (182)
T ss_pred EEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhcc
Confidence 5788899999999999 788887766 99999999999 99999999999999987642 4566 6899999995
Q ss_pred C-----cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 75 R-----ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 75 ~-----~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
. .+....+++..+++..++++++|||++|.|++++|..+++.+.+.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~~~ 169 (182)
T cd04128 118 ADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFDLP 169 (182)
T ss_pred ccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcC
Confidence 2 2222346778888899999999999999999999999999887544
No 47
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.81 E-value=5.3e-19 Score=141.98 Aligned_cols=114 Identities=20% Similarity=0.351 Sum_probs=99.5
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+.+++|| ++|+.++.. ++|++|+|||+ +++||+.+. .|+..+.++. ++.|++|||||+|+
T Consensus 37 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl 114 (174)
T smart00174 37 ADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDL 114 (174)
T ss_pred EEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhh
Confidence 4677889999999999 778777765 99999999999 999999996 6999998765 68999999999999
Q ss_pred CCcc------------cccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 74 ARAR------------AVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 74 ~~~~------------~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
..+. .++.+++.++++..+. +|++|||++|.|++++|..+++.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 115 REDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred hhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhc
Confidence 7532 3777888999999986 8999999999999999999998764
No 48
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.81 E-value=6.6e-19 Score=140.74 Aligned_cols=115 Identities=23% Similarity=0.431 Sum_probs=101.3
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
++..++..+.+++|| ++|+.++.. ++|++++|||+ ++++|+.+..|+.++.+.. ..+.|+++||||+||..
T Consensus 42 ~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~ 120 (165)
T cd01865 42 TVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMED 120 (165)
T ss_pred EEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCc
Confidence 556678889999999 777776655 99999999999 9999999999999997754 25789999999999988
Q ss_pred cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 76 ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
.+.+..+++.++++..+++++++||++|.|++++|+.+++.+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 121 ERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 88888888888999999999999999999999999999987643
No 49
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.81 E-value=7.2e-19 Score=140.78 Aligned_cols=116 Identities=23% Similarity=0.482 Sum_probs=103.3
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+++++|| ++|..++.. ++|++|+|||+ ++++|+.+..|+..+.+.. ..+.|+++||||+|+.
T Consensus 43 ~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~ 121 (167)
T cd01867 43 RTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDME 121 (167)
T ss_pred EEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccc
Confidence 4567788899999999 667776654 99999999999 9999999999999998754 3679999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
+.+.+..+++..+++.++++++++||++|.|++++|+.+++.+..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 122 EKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 888888888999999999999999999999999999999988753
No 50
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=1.2e-18 Score=142.33 Aligned_cols=121 Identities=22% Similarity=0.344 Sum_probs=105.9
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+++|| ++|+.++.. ++|++|+|||+ ++++|+.+..|+.++..+. ..+.|+++||||+|+.
T Consensus 40 ~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 40 KTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLV 118 (188)
T ss_pred EEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCc
Confidence 4567788899999999 667766655 99999999999 9999999999999998765 2568999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhccc
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLV 124 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~ 124 (238)
..+.+..+++..++...+++|+++||++|.|++++|..+++.+.......
T Consensus 119 ~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~~~~~ 168 (188)
T cd04125 119 NNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIKRLEEQ 168 (188)
T ss_pred ccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcC
Confidence 88888888888999889999999999999999999999999998765444
No 51
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.80 E-value=1.1e-18 Score=145.75 Aligned_cols=119 Identities=22% Similarity=0.373 Sum_probs=105.1
Q ss_pred cEEEE-CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQG-HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~-~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+++.+ ++..+.+++|| ++|..++.. ++|++|+|||+ +++||+++..|+.++.+.......|++|||||+|+
T Consensus 42 ~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl 121 (211)
T cd04111 42 RLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL 121 (211)
T ss_pred EEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccc
Confidence 45555 46789999999 778777655 99999999999 99999999999999987654467889999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
...+.+..+++..+++.++++|+++||++|.|++++|..|++.+.+..
T Consensus 122 ~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~ 169 (211)
T cd04111 122 ESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERI 169 (211)
T ss_pred ccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 888888899999999999999999999999999999999999887664
No 52
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.80 E-value=1.2e-18 Score=138.40 Aligned_cols=117 Identities=22% Similarity=0.378 Sum_probs=103.5
Q ss_pred ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
.+.+.+++..+.+++|| ++|+.++.. ++|++++|||+ ++++|+.+..|...+.+.....+.|+++||||+|+
T Consensus 38 ~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl 117 (164)
T smart00173 38 RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDL 117 (164)
T ss_pred EEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 35677888999999999 788777665 89999999999 99999999999999877654468999999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
...+.+..+++..+++..+.+|+++||++|.|++++|+.|++.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 118 ESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred cccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 887778888888899989999999999999999999999998764
No 53
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.80 E-value=1.2e-18 Score=142.95 Aligned_cols=119 Identities=21% Similarity=0.419 Sum_probs=105.2
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.++||| ++|..++.. ++|++|+|||+ ++++|+++..|+..+.... ..++|+++||||+||.
T Consensus 41 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 41 KVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMS 119 (191)
T ss_pred EEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccch
Confidence 4577888999999999 677766654 89999999999 9999999999999998764 2578999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
..+.+..+++..+++.++++|+++||++|.|++++|..|++.+.....
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~ 167 (191)
T cd04112 120 GERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRKY 167 (191)
T ss_pred hccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 778888888999999999999999999999999999999999977653
No 54
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.80 E-value=1e-18 Score=140.95 Aligned_cols=117 Identities=21% Similarity=0.243 Sum_probs=100.4
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.++||| ++|+.++.. ++|++++|||+ ++++|+.+..|+.++.+.....+.|+++||||+||.
T Consensus 40 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 40 ERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred EEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence 4567788899999999 788877766 99999999999 999999999999998765434567899999999996
Q ss_pred Cccc--ccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 75 RARA--VSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 75 ~~~~--v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
..+. +.++++..+++.++.+|+++||++|.|++++|..+++.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 120 SPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred ccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5433 35667788888889999999999999999999999988754
No 55
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.80 E-value=8.7e-19 Score=147.36 Aligned_cols=111 Identities=26% Similarity=0.347 Sum_probs=97.6
Q ss_pred eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC------
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR------ 75 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~------ 75 (238)
..+.+.||| ++|+.++.. ++|++|+|||+ +++||+++..|+..+.+.. ..+.|+||||||+||..
T Consensus 42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~ 120 (220)
T cd04126 42 GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAG 120 (220)
T ss_pred eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccccccccccc
Confidence 468899999 788887765 99999999999 9999999999888887643 36789999999999975
Q ss_pred -------------cccccHHHHHHHHHhCC--------------CeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 76 -------------ARAVSSQDAKNLAASFK--------------VKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 76 -------------~~~v~~~~~~~~~~~~~--------------~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
.+.++.+++..++++.+ ++|+||||++|.||+++|..+++.+....
T Consensus 121 ~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~ 193 (220)
T cd04126 121 QEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLI 193 (220)
T ss_pred ccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence 67889999999999876 68999999999999999999998887554
No 56
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.79 E-value=1.8e-18 Score=145.31 Aligned_cols=115 Identities=17% Similarity=0.321 Sum_probs=98.6
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
.+..++..+++.||| ++|+.++.. +++++|+|||+ ++.||+.+..|+.++.+.. .+.|++|||||+||..
T Consensus 54 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 54 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN 131 (219)
T ss_pred EEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhh
Confidence 455677889999999 888888765 99999999999 9999999999999998765 6899999999999964
Q ss_pred cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 76 ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
+.+..+++ .+++..+++||+|||++|.|++++|.+|++.+.....
T Consensus 132 -~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~~~ 176 (219)
T PLN03071 132 -RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 176 (219)
T ss_pred -ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcCcc
Confidence 34445555 6777888999999999999999999999999876543
No 57
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.79 E-value=1.7e-18 Score=138.10 Aligned_cols=115 Identities=24% Similarity=0.453 Sum_probs=102.5
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+++|| ++|..++.. ++|++|+|||+ +++||..+..|+..+.+.. ..+.|+++|+||+|+.
T Consensus 42 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~ 120 (166)
T cd01869 42 RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLT 120 (166)
T ss_pred EEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcc
Confidence 4567788889999999 777777655 89999999999 9999999999999998764 3578999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
..+.+..+++..+++..+++++++||++|.|++++|..|++.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 121 DKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred cccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999998774
No 58
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.79 E-value=2.4e-18 Score=142.16 Aligned_cols=119 Identities=21% Similarity=0.360 Sum_probs=105.4
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+++.+++..+.++||| ++|+.++.. +++++|+|||+ ++++|+.+..|+..+.... ...|++|||||+|+.
T Consensus 46 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~ 123 (199)
T cd04110 46 RTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDP 123 (199)
T ss_pred EEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccc
Confidence 3566778889999999 778877765 89999999999 9999999999999987755 689999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL 123 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~ 123 (238)
..+.+..+++..+++..+++|+++||++|.||+++|.+|++.+......
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~~ 172 (199)
T cd04110 124 ERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKD 172 (199)
T ss_pred cccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHhhhc
Confidence 8777888889999999999999999999999999999999999765543
No 59
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.79 E-value=1.4e-18 Score=145.28 Aligned_cols=118 Identities=15% Similarity=0.163 Sum_probs=102.9
Q ss_pred cEEEECC-eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC--CCCCEEEEEEec
Q psy14042 3 QSLQGHS-GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL--RTRPAIIVANKI 71 (238)
Q Consensus 3 k~i~~~~-~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~--~~~piilVgNK~ 71 (238)
+.+.+++ ..+.++||| +.|+.++.. ++|++|+|||+ +++||+.+..|+..+.+.... .+.|+++||||+
T Consensus 40 ~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~ 119 (215)
T cd04109 40 KRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKT 119 (215)
T ss_pred EEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECc
Confidence 4566654 579999999 667766655 99999999999 999999999999999887532 457899999999
Q ss_pred cCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 72 DLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 72 DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
||...+.+..+++..+++.++++++++||++|.|++++|+.|++.+...
T Consensus 120 DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 120 DLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 9988888888899999999999999999999999999999999988764
No 60
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.79 E-value=1.6e-18 Score=137.53 Aligned_cols=116 Identities=23% Similarity=0.403 Sum_probs=101.9
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC----CCCCEEEEEEe
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL----RTRPAIIVANK 70 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~----~~~piilVgNK 70 (238)
+.+.+++..+.+++|| ++|..++.. ++|++|+|||+ ++.+|+.+..|+.++.++... .+.|+++|+||
T Consensus 40 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 119 (168)
T cd04119 40 KKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANK 119 (168)
T ss_pred EEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEc
Confidence 4577788999999999 666666654 99999999999 999999999999999887542 57899999999
Q ss_pred ccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 71 IDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 71 ~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
+|+..++.+..++...+++..+++++++||++|.|++++|..|++.+.
T Consensus 120 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 120 IDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred hhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 999877778888888889989999999999999999999999998764
No 61
>PLN03110 Rab GTPase; Provisional
Probab=99.79 E-value=2.2e-18 Score=144.32 Aligned_cols=118 Identities=26% Similarity=0.401 Sum_probs=106.4
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+++.+++..+.++||| ++|+.++.. +++++|+|||+ ++.+|+.+..|+..+.+.. ..++|+++||||+||.
T Consensus 52 ~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 52 RTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLN 130 (216)
T ss_pred EEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcc
Confidence 5678889999999999 778777665 99999999999 9999999999999998764 2679999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
..+.+..+++..++...+++|+++||++|.|++++|..+++.+.+..
T Consensus 131 ~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~~ 177 (216)
T PLN03110 131 HLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHII 177 (216)
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 88888888999999999999999999999999999999999987754
No 62
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.79 E-value=2.9e-18 Score=135.95 Aligned_cols=115 Identities=23% Similarity=0.336 Sum_probs=101.6
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+++++|| ++|..++.. ++|++++|||+ ++.+|+.+..|+..+.+.....+.|++||+||+|+.
T Consensus 41 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 41 KQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred EEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence 3556888889999999 778777755 99999999999 999999999999998876544689999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
..+.+..+++.++++..+++++++||++|.|++++|+.|++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 121 HQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 8777888888889988899999999999999999999998764
No 63
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.78 E-value=3.7e-18 Score=134.62 Aligned_cols=114 Identities=23% Similarity=0.385 Sum_probs=99.9
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+++|| ++|+.++.. +++++++|||+ ++.+|+.+..|+..+.+.....+.|+++|+||+|+.
T Consensus 40 ~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 40 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred EEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 4567888889999999 788888766 89999999999 999999999999999877645789999999999997
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
. +.+...++..+++..+++++++||++|.|++++|..+++.+
T Consensus 120 ~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 120 A-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred c-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 6 45667778888888899999999999999999999998654
No 64
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.78 E-value=2.8e-18 Score=137.38 Aligned_cols=113 Identities=17% Similarity=0.255 Sum_probs=98.7
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC---CCCCCEEEEEEec
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY---LRTRPAIIVANKI 71 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~---~~~~piilVgNK~ 71 (238)
+.+.+++..++++||| ++|+.++.. ++|++|+|||+ ++++|+.+..|+.++..+.. ..++|++||+||+
T Consensus 45 ~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 124 (170)
T cd04116 45 KDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKN 124 (170)
T ss_pred EEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECc
Confidence 5677889999999999 778887765 89999999999 89999999999999877643 2568999999999
Q ss_pred cCCCcccccHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 72 DLARARAVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 72 DL~~~~~v~~~~~~~~~~~~~-~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
|+. .+.+..+++.+++++++ .+++++||++|.|++++|..+++.
T Consensus 125 Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 125 DIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred ccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 997 56677888999998887 489999999999999999999864
No 65
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.78 E-value=4e-18 Score=136.17 Aligned_cols=112 Identities=24% Similarity=0.331 Sum_probs=97.6
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC--CCCCCEEEEEEeccC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY--LRTRPAIIVANKIDL 73 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~--~~~~piilVgNK~DL 73 (238)
.+..++..+.+++|| ++|..++.. +++++|+|||+ ++.+|+.+..|+..+.+... ..+.|++|||||+|+
T Consensus 41 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 120 (165)
T cd04140 41 VISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDE 120 (165)
T ss_pred EEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccc
Confidence 455677889999999 788777654 99999999999 99999999999988876542 257999999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILN 115 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~ 115 (238)
...+++..+++..++...+++|+++||++|.|++++|++|+.
T Consensus 121 ~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 121 SHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred cccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence 887788888888888888999999999999999999999984
No 66
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.78 E-value=4.1e-18 Score=136.88 Aligned_cols=115 Identities=16% Similarity=0.367 Sum_probs=101.7
Q ss_pred cEEEECCeEEEEEEEe----CCCc-ccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYE-KLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~-~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+.++||| ++|+ .+... ++|++++|||+ ++.+|+.+..|+.++.......++|+++|+||+|+
T Consensus 42 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 121 (170)
T cd04115 42 RTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDL 121 (170)
T ss_pred EEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 3567788899999999 6676 34444 89999999999 99999999999999988765578999999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCC---CCCHHHHHHHHHHHH
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGI---HHNVDELLVGILNQI 117 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t---~~gv~elf~~i~~~l 117 (238)
...+.+..+++..+++..+++|+++||++ +.|++++|..+++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 122 REQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred hhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 98888888899999999999999999999 899999999999765
No 67
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.78 E-value=6.6e-18 Score=134.68 Aligned_cols=116 Identities=23% Similarity=0.326 Sum_probs=98.6
Q ss_pred cEEEECCeEEEEEEEe----CCC-cccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC-CCCCCEEEEEEecc
Q psy14042 3 QSLQGHSGKVRAIIWN----EQY-EKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY-LRTRPAIIVANKID 72 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~-~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~-~~~~piilVgNK~D 72 (238)
+.+.+++..+++++|| +++ ...... ++|++|+|||+ ++.||+.+..|+..+..... ..+.|+++||||+|
T Consensus 38 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 117 (165)
T cd04146 38 RQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKAD 117 (165)
T ss_pred EEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence 4567889999999999 322 222222 89999999999 99999999999999887653 35899999999999
Q ss_pred CCCcccccHHHHHHHHHhCCCeEEEEccCCCC-CHHHHHHHHHHHHH
Q psy14042 73 LARARAVSSQDAKNLAASFKVKFIEVSVGIHH-NVDELLVGILNQIR 118 (238)
Q Consensus 73 L~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~-gv~elf~~i~~~l~ 118 (238)
+...+.+..+++.++++..+++|+++||+++. ||+++|+.+++.+.
T Consensus 118 l~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 118 LLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred hHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 98878888889999999999999999999994 99999999998764
No 68
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.78 E-value=4.5e-18 Score=135.39 Aligned_cols=115 Identities=30% Similarity=0.466 Sum_probs=101.6
Q ss_pred ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
.+.+..++..+.+++|| ++|..++.. +++++|+|||+ ++.+|+.+..|+.++.+.. ..+.|+++|+||+|+
T Consensus 42 ~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl 120 (165)
T cd01868 42 TRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDL 120 (165)
T ss_pred EEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccc
Confidence 35677888889999999 677777665 89999999999 9999999999999998765 246899999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
...+.+..++...++...+++++++||++|.|++++|+.++..+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 121 RHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred cccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 88888888888999988899999999999999999999998764
No 69
>PLN03108 Rab family protein; Provisional
Probab=99.77 E-value=8.2e-18 Score=140.28 Aligned_cols=118 Identities=21% Similarity=0.391 Sum_probs=104.8
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+++|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+.+.. ....|+++|+||+||.
T Consensus 46 ~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~ 124 (210)
T PLN03108 46 RMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLA 124 (210)
T ss_pred EEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCc
Confidence 3577889999999999 677766654 89999999999 9999999999999887654 2679999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
..+.++.+++.++++.++++|+++||+++.|++++|.++++.+..+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~ 171 (210)
T PLN03108 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKI 171 (210)
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 88888999999999999999999999999999999999999987654
No 70
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.77 E-value=8.4e-18 Score=134.93 Aligned_cols=112 Identities=18% Similarity=0.326 Sum_probs=94.8
Q ss_pred EEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042 5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA 76 (238)
Q Consensus 5 i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~ 76 (238)
+..++..+.+++|| ++|..++.. ++|++|+|||+ ++++|+.+..|+.++.+.. .+.|+++||||+|+..
T Consensus 42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~- 118 (166)
T cd00877 42 FHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKD- 118 (166)
T ss_pred EEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhccc-
Confidence 45567889999999 777777655 89999999999 9999999999999998876 4899999999999973
Q ss_pred ccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 77 RAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
+.+.. +..++++..+++++++||++|.|++++|..|++.+.+.
T Consensus 119 ~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 161 (166)
T cd00877 119 RKVKA-KQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGN 161 (166)
T ss_pred ccCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHhc
Confidence 33333 34567777889999999999999999999999888653
No 71
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.77 E-value=3.8e-18 Score=135.16 Aligned_cols=112 Identities=22% Similarity=0.407 Sum_probs=99.0
Q ss_pred cEEEEC--CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042 3 QSLQGH--SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKID 72 (238)
Q Consensus 3 k~i~~~--~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~D 72 (238)
+.+.++ +..+++++|| ++|+.++.. ++|++++|||+ ++++|+.+..|+..+.+.. .+.|+++|+||+|
T Consensus 40 ~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~D 117 (162)
T cd04106 40 KQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKID 117 (162)
T ss_pred EEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChh
Confidence 345555 7789999999 778777655 99999999999 9999999999999987654 6899999999999
Q ss_pred CCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 73 LARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 73 L~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
+..++.+..+++..+++..+++++++||++|.|++++|..|+..
T Consensus 118 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 118 LLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred cccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 98888888889999999999999999999999999999999753
No 72
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.77 E-value=1.2e-17 Score=140.55 Aligned_cols=121 Identities=36% Similarity=0.591 Sum_probs=103.9
Q ss_pred cEEEECCeEEEEEEEe----CCC-cccccC-CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQY-EKLTSS-DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~-~~l~~~-~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
+++.+++..+.+++|| +.+ +..... ++|++++|||+ ++.+|+.+..|+..+.+.....+.|+++|+||+|+..
T Consensus 41 ~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 41 RTVSVDGEESTLVVIDHWEQEMWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred EEEEECCEEEEEEEEeCCCcchHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc
Confidence 5788889999999999 312 222233 89999999999 9999999999999998765446899999999999988
Q ss_pred cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042 76 ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL 123 (238)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~ 123 (238)
.+.+..+++.+++..++++|+++||+++.||+++|+.+++.+......
T Consensus 121 ~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~~~~ 168 (221)
T cd04148 121 SREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLRRDS 168 (221)
T ss_pred cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhhhcc
Confidence 888888888899999999999999999999999999999999765543
No 73
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.77 E-value=1.1e-17 Score=133.91 Aligned_cols=116 Identities=23% Similarity=0.357 Sum_probs=103.1
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+++|| ++|+.++.. +++++++|||+ ++++|+.+..|...+.+.....++|+++++||+|+.
T Consensus 40 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 40 KQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred EEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence 5677888999999999 788888776 99999999999 999999999999998875544789999999999998
Q ss_pred CcccccHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~-~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
..+.+..+++..+++.++ ++++++||+++.|++++|.++++++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 120 DDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred ccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 878888888888888888 89999999999999999999997664
No 74
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.77 E-value=2e-17 Score=135.38 Aligned_cols=117 Identities=23% Similarity=0.318 Sum_probs=101.4
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+++++|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+.++.... .+.|+++|+||+|+.
T Consensus 41 ~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~ 118 (193)
T cd04118 41 KRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLI 118 (193)
T ss_pred EEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEccccc
Confidence 4678899999999999 677777654 99999999999 9999999999999998754 579999999999995
Q ss_pred Cc----ccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 75 RA----RAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 75 ~~----~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
.. +.+..+++..++...+++++++||+++.|++++|+.+++.+....
T Consensus 119 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 169 (193)
T cd04118 119 EQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRA 169 (193)
T ss_pred ccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 32 455667788888889999999999999999999999999987544
No 75
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.77 E-value=1e-17 Score=134.89 Aligned_cols=110 Identities=20% Similarity=0.353 Sum_probs=95.7
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+++++|| ++|..++.. ++|++|+|||+ ++.+|+.+. .|+..+.+.. .+.|+++||||+||
T Consensus 39 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilv~nK~Dl 116 (173)
T cd04130 39 VVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN--PKAPIILVGTQADL 116 (173)
T ss_pred EEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhh
Confidence 4567888899999999 678777765 99999999999 999999984 6998887643 57999999999999
Q ss_pred CC------------cccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHH
Q psy14042 74 AR------------ARAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGIL 114 (238)
Q Consensus 74 ~~------------~~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~ 114 (238)
.. .+.+..+++..+++..+. +|+++||++|.|++++|+.++
T Consensus 117 ~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 117 RTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred ccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 63 456788889999999887 899999999999999999887
No 76
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.76 E-value=1.2e-17 Score=135.85 Aligned_cols=118 Identities=23% Similarity=0.369 Sum_probs=100.3
Q ss_pred EEEEC-CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 4 SLQGH-SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 4 ~i~~~-~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
.+..+ +..+.++||| ++|..+++. ++|++|+|||+ ++.||+.+. .|+..+.... .+.|+++||||+||
T Consensus 40 ~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl 117 (187)
T cd04132 40 NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC--PGTPIMLVGLKTDL 117 (187)
T ss_pred EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhh
Confidence 35554 7789999999 677777654 99999999999 999999996 5998887654 68999999999999
Q ss_pred CCc----ccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042 74 ARA----RAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRLKRSL 123 (238)
Q Consensus 74 ~~~----~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~~~~~ 123 (238)
... +.+..+++.+++...++ +++++||++|.|++++|..+++.+......
T Consensus 118 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~ 172 (187)
T cd04132 118 RKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKEGK 172 (187)
T ss_pred hhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 653 35677889999999998 899999999999999999999999876543
No 77
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.76 E-value=1.3e-17 Score=133.77 Aligned_cols=116 Identities=19% Similarity=0.374 Sum_probs=102.7
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.||| ++|..+... ++|++|+|||+ ++.||+.+..|+.+++++. .++.|+++|+||+|+.
T Consensus 44 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 44 RMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLE 122 (168)
T ss_pred EEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccc
Confidence 4567788899999999 677776654 99999999999 9999999999999998764 2679999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
..+.+..++++.++...+++++++||+++.|++++|..+++.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 123 SRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 777888889999999999999999999999999999999988754
No 78
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.76 E-value=1.1e-17 Score=132.66 Aligned_cols=113 Identities=23% Similarity=0.342 Sum_probs=100.2
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+++|| ++|..++.. ++|++|+|||+ ++.+|..+..|+.+++... ..+.|++||+||+|+.
T Consensus 40 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~ 118 (161)
T cd04113 40 KIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLA 118 (161)
T ss_pred EEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcc
Confidence 4567788889999999 667666555 99999999999 9999999999999987654 3689999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
..+.+..+++..+++..+++++++||+++.|++++|+.+++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 119 DQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred hhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 888888889999999999999999999999999999999864
No 79
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.76 E-value=2e-17 Score=131.79 Aligned_cols=112 Identities=23% Similarity=0.297 Sum_probs=95.5
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
.+.+++..+.+++|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+++.. .+.|+++|+||+|+..
T Consensus 41 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl~~ 118 (161)
T cd04124 41 NAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDLDP 118 (161)
T ss_pred EEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccCch
Confidence 456788899999999 888888765 99999999999 9999999999999998754 6799999999999953
Q ss_pred cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 76 ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
. ..++...+++..+++++++||++|.|++++|..+++.+.+.
T Consensus 119 ~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 119 S---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred h---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 2 12345567777889999999999999999999999887654
No 80
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=1.5e-17 Score=132.70 Aligned_cols=113 Identities=24% Similarity=0.394 Sum_probs=98.8
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+++.+++..+.+++|| ++|+.++.. ++|++++|||+ ++.+|+.+..|+..+.... ..+.|+++|+||+|+.
T Consensus 43 ~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~ 121 (165)
T cd01864 43 KTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLE 121 (165)
T ss_pred EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccc
Confidence 4567788889999999 667666654 89999999999 9999999999999998754 3689999999999998
Q ss_pred CcccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~ 116 (238)
..+.+..+++..+++..+. .++++||++|.|++++|..+++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 122 EQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred cccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 8888888888999998886 68999999999999999999864
No 81
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.75 E-value=3.9e-17 Score=135.18 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=97.7
Q ss_pred cEEEECCeEEEEEEEe----CCCcccc-----------cCCceEEEEEEEC-CcchHHHHHHHHHHHHHhcC--CCCCCE
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLT-----------SSDETGLIIVWML-YKPSYHRVEQDVIRLHEEGY--LRTRPA 64 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~-----------~~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~--~~~~pi 64 (238)
+.+.+++..+.++||| ++|.... ..++|++|+|||+ +++||+.+..|+.++.+... ..++|+
T Consensus 40 ~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~pi 119 (198)
T cd04142 40 PAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPI 119 (198)
T ss_pred eEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCE
Confidence 3567789899999999 3332111 1289999999999 99999999999999887642 367999
Q ss_pred EEEEEeccCCCcccccHHHHHHHHH-hCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 65 IIVANKIDLARARAVSSQDAKNLAA-SFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 65 ilVgNK~DL~~~~~v~~~~~~~~~~-~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
+|||||+|+...+.+..+++..+++ .++++|++|||++|.|++++|+.+++.+....
T Consensus 120 iivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 120 VVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATTRG 177 (198)
T ss_pred EEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhccC
Confidence 9999999998777777777777754 56899999999999999999999998877544
No 82
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.75 E-value=2.4e-17 Score=140.95 Aligned_cols=115 Identities=18% Similarity=0.232 Sum_probs=98.6
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhc--------CCCCCCEEE
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEG--------YLRTRPAII 66 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~--------~~~~~piil 66 (238)
+.+.+++..+.++||| ++|+.+... ++|++|+|||+ +++||+.+..|+.++.... ...+.|+||
T Consensus 39 k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIi 118 (247)
T cd04143 39 KLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVI 118 (247)
T ss_pred EEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEE
Confidence 5678889999999999 677766654 89999999999 9999999999999987642 125789999
Q ss_pred EEEeccCCCcccccHHHHHHHHHh-CCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 67 VANKIDLARARAVSSQDAKNLAAS-FKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 67 VgNK~DL~~~~~v~~~~~~~~~~~-~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
|+||+|+...+++..+++.+++.. .+++|+++||++|.|++++|..|++.+
T Consensus 119 vgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 119 CGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 999999987777888888887764 478899999999999999999999765
No 83
>PLN03118 Rab family protein; Provisional
Probab=99.75 E-value=3.2e-17 Score=136.53 Aligned_cols=119 Identities=22% Similarity=0.338 Sum_probs=103.2
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHH-HHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQ-DVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~-~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+.+++|| ++|+.++.. ++|++|+|||+ ++++|+.+.. |...+..+....+.|++||+||+|+
T Consensus 53 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl 132 (211)
T PLN03118 53 KQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDR 132 (211)
T ss_pred EEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 3466788889999999 788887765 99999999999 9999999975 7777765554467899999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
...+.+..++...++...+++|+++||+++.|++++|..|++.+...+
T Consensus 133 ~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 133 ESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVP 180 (211)
T ss_pred cccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 887788888888899999999999999999999999999999997654
No 84
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.75 E-value=5.2e-17 Score=130.33 Aligned_cols=113 Identities=19% Similarity=0.292 Sum_probs=96.7
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
..+.+++..+.+.+|| ++|+.++.. ++|++|+|||+ ++.+|+.+. .|+..+.+.. .+.|+++||||+|+
T Consensus 39 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~--~~~piivv~nK~Dl 116 (174)
T cd04135 39 VSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA--PNVPYLLVGTQIDL 116 (174)
T ss_pred EEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeEchhh
Confidence 3567788899999999 777776665 99999999999 999999995 6888887653 78999999999998
Q ss_pred CCc------------ccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 74 ARA------------RAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 74 ~~~------------~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l 117 (238)
... +.+..+++..+++..++ +|++|||++|.|++++|..+++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 117 RDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred hcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 643 35777889999999886 799999999999999999999765
No 85
>KOG0393|consensus
Probab=99.74 E-value=1.8e-17 Score=135.54 Aligned_cols=118 Identities=19% Similarity=0.314 Sum_probs=103.2
Q ss_pred cEEEEC-CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042 3 QSLQGH-SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKID 72 (238)
Q Consensus 3 k~i~~~-~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~D 72 (238)
-.+.++ |+.|+|.+|| |.|..|++. ++|.+|++|++ +++||+++ ..|+.+++.+. ++.|+||||+|.|
T Consensus 43 ~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~D 120 (198)
T KOG0393|consen 43 ANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKAD 120 (198)
T ss_pred EEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHH
Confidence 357885 9999999999 666666544 99999999999 99999998 67999999998 8999999999999
Q ss_pred CCCc------------ccccHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 73 LARA------------RAVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 73 L~~~------------~~v~~~~~~~~~~~~~-~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
|..+ ..+..+++..+|++.| ..|+||||++..|+.++|+..++.....++
T Consensus 121 Lr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 121 LRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 9632 3567889999999999 579999999999999999999988876553
No 86
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.74 E-value=3.6e-17 Score=129.95 Aligned_cols=112 Identities=21% Similarity=0.358 Sum_probs=96.5
Q ss_pred EEEEC-CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 4 SLQGH-SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 4 ~i~~~-~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
.+.++ +..+.+++|| ++|+.+... ++|++++|||+ ++++|+.+..|+.++.+.. .+.|+++|+||+|+.
T Consensus 43 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 43 EVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLA 120 (164)
T ss_pred EEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccc
Confidence 34444 6789999999 566666554 89999999999 9999999999999988765 679999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
..+++...+...++...+++++++||+++.|++++|..+++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 121 DKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred cccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 8777887777778888899999999999999999999998764
No 87
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.73 E-value=1.1e-16 Score=130.81 Aligned_cols=117 Identities=23% Similarity=0.322 Sum_probs=97.5
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
.+.+++..+.+.+|| ++|..+... ++++++++|++ ++++|+.+. .|+..+++.. .++|++|||||+|+.
T Consensus 41 ~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~ 118 (187)
T cd04129 41 DCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLR 118 (187)
T ss_pred EEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhh
Confidence 466788889999999 556554433 89999999999 899999996 6999998755 579999999999995
Q ss_pred C----------cccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 75 R----------ARAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 75 ~----------~~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
. .+.+..+++..+++..+. +||+|||++|.|++++|+.+++.+...++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 119 QDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALLVRK 177 (187)
T ss_pred hCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhcccC
Confidence 4 345666788889999985 89999999999999999999988866553
No 88
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.72 E-value=9.7e-17 Score=127.03 Aligned_cols=116 Identities=25% Similarity=0.424 Sum_probs=101.3
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
..+..++..+++++|| ++|..+... ++|++|+|||+ +..+|+.+..|+.++..+.. .+.|+++|+||+|+.
T Consensus 40 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~ 118 (164)
T smart00175 40 KTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLE 118 (164)
T ss_pred EEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcc
Confidence 3567788889999999 566655544 89999999999 99999999999999987653 589999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
..+++..+.+..+++..+++++++||+++.|++++|..|++.+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 119 DQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred cccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 777778888888998899999999999999999999999988754
No 89
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.72 E-value=7.4e-17 Score=127.60 Aligned_cols=113 Identities=26% Similarity=0.427 Sum_probs=98.7
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+++++|| ++|+.+... ++|++++|||+ ++.+|+.+..|+..+.+... .+.|+++|+||+|+.
T Consensus 40 ~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~ 118 (161)
T cd01861 40 KTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLS 118 (161)
T ss_pred EEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhcc
Confidence 4567788889999999 677766654 99999999999 99999999999999876542 479999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
..+.+..++...+++..+++++++||+++.|++++|+.|++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 119 DKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 777788888888998889999999999999999999999864
No 90
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.72 E-value=1.1e-16 Score=126.05 Aligned_cols=114 Identities=27% Similarity=0.458 Sum_probs=100.3
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+..++..+.+.+|| ++|..+++. ++|++++|||+ +.++|+.+..|+.++.+... .+.|+++|+||+|+.
T Consensus 40 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~ 118 (162)
T cd04123 40 KTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLE 118 (162)
T ss_pred EEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccc
Confidence 4566778889999999 567777665 89999999999 99999999999999987763 479999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
..+.+..++..++++..+++++++||+++.|++++|.++++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 119 RQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 7777778888888888999999999999999999999998764
No 91
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.72 E-value=1.1e-16 Score=126.93 Aligned_cols=115 Identities=26% Similarity=0.401 Sum_probs=101.6
Q ss_pred ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
.+++.+++..+++.||| ++|+.++.. ++|++|+|||. +.++|+.+..|+..+..... ...|+++++||+|+
T Consensus 40 ~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~ 118 (163)
T cd01860 40 TQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADL 118 (163)
T ss_pred EEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccc
Confidence 35778889999999999 667766654 89999999999 99999999999999987653 67999999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
...+.+..++...++...+++++++||++|.|++++|..|++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 119 ESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred cccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 87777788888888998899999999999999999999999765
No 92
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.72 E-value=2.5e-16 Score=126.50 Aligned_cols=113 Identities=18% Similarity=0.335 Sum_probs=94.2
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+.+++|| ++|+.++.. ++|++++|||+ ++++|+.+. .|+..+++.. .+.|+++|+||+|+
T Consensus 40 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl 117 (175)
T cd01870 40 ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDL 117 (175)
T ss_pred EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhc
Confidence 4567888999999999 677776644 89999999999 899999985 6988887654 68999999999998
Q ss_pred CCc------------ccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 74 ARA------------RAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 74 ~~~------------~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l 117 (238)
... ..+...+++++++..+. ++++|||++|.|++++|..|++.+
T Consensus 118 ~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 118 RNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred ccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 642 23456778888888775 899999999999999999998654
No 93
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.72 E-value=2.2e-16 Score=124.83 Aligned_cols=116 Identities=24% Similarity=0.380 Sum_probs=100.3
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+++|| ++|..++.. +++++++|||+ ++.+|..+..|...+.......+.|+++|+||+|+.
T Consensus 39 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~ 118 (164)
T cd04139 39 KKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLE 118 (164)
T ss_pred EEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccc
Confidence 4567788899999999 566666554 89999999999 999999999999998876544689999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
.......++...+++.++++++++||++|.|++++|+.+++.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 119 DKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred cccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 76666777788888888999999999999999999999998764
No 94
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.71 E-value=2.2e-16 Score=125.01 Aligned_cols=112 Identities=25% Similarity=0.418 Sum_probs=96.7
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
.+.+++..+.+++|| ++|..+... ++|++++|||+ ++.+|+.+..|+..+.++....+.|+++|+||+|+..
T Consensus 41 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~ 120 (161)
T cd01863 41 TLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN 120 (161)
T ss_pred EEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc
Confidence 456778889999999 566666544 89999999999 9999999999999998887667899999999999973
Q ss_pred cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 76 ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
..+..++...+++..+++++++||++|.|++++|..+++.
T Consensus 121 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 121 -REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred -cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 3455667888888899999999999999999999998864
No 95
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.70 E-value=1.9e-16 Score=127.51 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=95.4
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+++.+++..+.+.+|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+.. ..+.|+++|+||+|+.
T Consensus 45 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 45 NTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLD 121 (169)
T ss_pred EEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEccccc
Confidence 4678889899999999 677777765 99999999999 99999999999987643 2579999999999997
Q ss_pred CcccccHHHHHHHHHhCCCe-EEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKVK-FIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~-~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
..+.+...+..++++.++++ ++++||+++.|++++|..+++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 122 EQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred ccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 66655555667788888874 799999999999999999998765
No 96
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.69 E-value=6.5e-16 Score=123.34 Aligned_cols=118 Identities=19% Similarity=0.287 Sum_probs=100.3
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC---CCCCCEEEEEEec
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY---LRTRPAIIVANKI 71 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~---~~~~piilVgNK~ 71 (238)
+.+.+++..+.+++|| +.|..++.. ++|++|+|||+ ++.+|+.+..|..++..... ..+.|+++|+||+
T Consensus 40 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 119 (172)
T cd01862 40 KEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKI 119 (172)
T ss_pred EEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECc
Confidence 4577888899999999 567766655 89999999999 89999999999988766542 2479999999999
Q ss_pred cCCCcccccHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 72 DLARARAVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 72 DL~~~~~v~~~~~~~~~~~~~-~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
|+..++.+..++.+.+.+..+ .+++++||++|.|++++|..+++.+.+.
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 120 DLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred ccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 998766677778888888887 7999999999999999999999888765
No 97
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.69 E-value=8.9e-16 Score=124.05 Aligned_cols=120 Identities=23% Similarity=0.330 Sum_probs=103.6
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+..++..+.+++|| ++|+.++.. +++++++|||+ +..+|+.+..|...+.+.....+.|+++|+||+|+.
T Consensus 40 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 40 KIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred EEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 4567778889999999 667766654 89999999999 999999999999988776544688999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
..+.+..++...+++.++++++++||+++.|++++|.++++.+.....
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 167 (180)
T cd04137 120 TQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKVEN 167 (180)
T ss_pred hcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence 777777777888888889999999999999999999999998876653
No 98
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.68 E-value=7.1e-16 Score=123.03 Aligned_cols=114 Identities=24% Similarity=0.432 Sum_probs=98.1
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.+|| ++|+.++.. .+|++++|||+ +..+|+.+..|+.++.... ..+.|+++|+||+|+.
T Consensus 47 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 47 KTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-NNKVITILVGNKIDLA 125 (169)
T ss_pred EEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccc
Confidence 3567888899999999 566665443 89999999999 9999999999999987754 2579999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
..+.+..+..+.+.+....+++++||++|.|++++|+.|++.+
T Consensus 126 ~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 126 ERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred cccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 8788887777888888889999999999999999999998754
No 99
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.68 E-value=8.3e-16 Score=126.80 Aligned_cols=117 Identities=21% Similarity=0.263 Sum_probs=96.5
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+++++|| ++|+.++.. ++|++|+|||+ +..+|+.+..|+..+.+.....+.|++||+||.|+.
T Consensus 38 ~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 117 (198)
T cd04147 38 KEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSL 117 (198)
T ss_pred EEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccc
Confidence 3567788889999999 666666544 99999999999 999999999999999887655689999999999996
Q ss_pred C-cccccHHHHHHHHH-hCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 75 R-ARAVSSQDAKNLAA-SFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 75 ~-~~~v~~~~~~~~~~-~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
. .+.+..++..+.+. ..+.+++++||++|.|++++|+++++.+..
T Consensus 118 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 164 (198)
T cd04147 118 EEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQANL 164 (198)
T ss_pred cccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence 5 45555555554443 456889999999999999999999988763
No 100
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.67 E-value=1.2e-16 Score=128.06 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=89.9
Q ss_pred EEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042 5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA 76 (238)
Q Consensus 5 i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~ 76 (238)
+.+++..+++++|| ++|+.++.. ++|++|+|||. ++.+|..++.|+.++.+.. .++|+++|+||+|+...
T Consensus 37 ~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 37 VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAA 114 (164)
T ss_pred EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCC
Confidence 34566679999999 788888776 99999999999 9999999999999986543 68999999999999876
Q ss_pred ccccH----HHHHHHHHhCCCeEEEEccCC------CCCHHHHHHHHH
Q psy14042 77 RAVSS----QDAKNLAASFKVKFIEVSVGI------HHNVDELLVGIL 114 (238)
Q Consensus 77 ~~v~~----~~~~~~~~~~~~~~~evSA~t------~~gv~elf~~i~ 114 (238)
+.++. .++..++++.++.++++||++ ++||+++|..++
T Consensus 115 ~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 115 RSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred CCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence 54432 234566677789999999998 999999999886
No 101
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.66 E-value=6e-16 Score=124.32 Aligned_cols=111 Identities=19% Similarity=0.188 Sum_probs=89.2
Q ss_pred CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc
Q psy14042 9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS 80 (238)
Q Consensus 9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~ 80 (238)
...+.+++|| ++|+.++.. ++|++++|||+ ++++|+.+..|+.++.+.....+.|++||+||+|+.. .+.
T Consensus 40 ~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~ 117 (169)
T cd04158 40 YKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALS 117 (169)
T ss_pred ECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCC
Confidence 3458899999 677777654 99999999999 9999999999999987644335689999999999964 355
Q ss_pred HHHHHHHHHhCC------CeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 81 SQDAKNLAASFK------VKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 81 ~~~~~~~~~~~~------~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
.+++..+++..+ +.+++|||++|.||+++|.+|++.+.+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 118 VEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred HHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhcc
Confidence 666666654322 36889999999999999999998876543
No 102
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.65 E-value=1.9e-15 Score=118.77 Aligned_cols=114 Identities=22% Similarity=0.347 Sum_probs=98.5
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+++|| +.|..+... ++|++++|||+ +++++..+..|...+.+.......|+++|+||+|+.
T Consensus 38 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 117 (160)
T cd00876 38 KTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE 117 (160)
T ss_pred EEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc
Confidence 3456777889999999 555555544 99999999999 899999999999998876544589999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
..+.+..+++..+++..+.+++++||+++.|++++|+.|++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 118 NERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred ccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 877788888999999889999999999999999999999864
No 103
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.65 E-value=4.7e-16 Score=125.14 Aligned_cols=104 Identities=17% Similarity=0.199 Sum_probs=82.7
Q ss_pred eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS 81 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~ 81 (238)
..+++++|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+.++.......++|++||+||+|+... +..
T Consensus 51 ~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 128 (168)
T cd04149 51 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKP 128 (168)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCH
Confidence 458999999 778877655 99999999999 89999999888887765332357899999999999642 445
Q ss_pred HHHHHHHHh-----CCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042 82 QDAKNLAAS-----FKVKFIEVSVGIHHNVDELLVGILN 115 (238)
Q Consensus 82 ~~~~~~~~~-----~~~~~~evSA~t~~gv~elf~~i~~ 115 (238)
++++...+. ..++++++||++|.|++++|++|.+
T Consensus 129 ~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 129 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred HHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 566554421 2357899999999999999999874
No 104
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.64 E-value=8.5e-16 Score=125.26 Aligned_cols=109 Identities=18% Similarity=0.198 Sum_probs=83.3
Q ss_pred CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc
Q psy14042 9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS 80 (238)
Q Consensus 9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~ 80 (238)
...+.++||| ++|+.++.. ++|++|+|||+ ++++|..+..++.++.......+.|++||+||+|++... .
T Consensus 58 ~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~ 135 (181)
T PLN00223 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--N 135 (181)
T ss_pred ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--C
Confidence 3458899999 788888765 99999999999 999999998888877543323679999999999997543 3
Q ss_pred HHHHHHHHHhC-----CCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 81 SQDAKNLAASF-----KVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 81 ~~~~~~~~~~~-----~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
.++..+...-. .+.++++||++|+||+++|++|++.+..
T Consensus 136 ~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 33333322211 1246689999999999999999988754
No 105
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.63 E-value=4.7e-15 Score=118.58 Aligned_cols=112 Identities=17% Similarity=0.203 Sum_probs=86.8
Q ss_pred EEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 5 i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
+.+++..+++++|| ++++..+.. ++|++++|||+ ++.+|+.+. .|+..++... .+.|+++|+||+|+.+
T Consensus 40 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 40 ADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRD 117 (166)
T ss_pred eeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccc
Confidence 45667889999999 445443332 99999999999 999999985 6888887655 5899999999999976
Q ss_pred cccc--cHHHHHHHHHhCC--CeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 76 ARAV--SSQDAKNLAASFK--VKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 76 ~~~v--~~~~~~~~~~~~~--~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
.+.. ..+++..+++.+. .+++++||+++.|++++|..+.+.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~ 164 (166)
T cd01893 118 GSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVL 164 (166)
T ss_pred ccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhc
Confidence 5543 2334444444443 38999999999999999999987664
No 106
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.63 E-value=4.8e-16 Score=123.83 Aligned_cols=104 Identities=20% Similarity=0.242 Sum_probs=79.6
Q ss_pred eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS 81 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~ 81 (238)
..+.+++|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+.++.......+.|++|++||+||.... ..
T Consensus 42 ~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~ 119 (159)
T cd04150 42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SA 119 (159)
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CH
Confidence 458899999 778777755 99999999999 899999999888887654333578999999999996432 22
Q ss_pred HHH-HHHH----HhCCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042 82 QDA-KNLA----ASFKVKFIEVSVGIHHNVDELLVGILN 115 (238)
Q Consensus 82 ~~~-~~~~----~~~~~~~~evSA~t~~gv~elf~~i~~ 115 (238)
++. ..+. ...++.++++||++|.|++++|++|.+
T Consensus 120 ~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 120 AEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 222 2221 123456889999999999999999863
No 107
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.62 E-value=1.1e-14 Score=116.04 Aligned_cols=110 Identities=19% Similarity=0.382 Sum_probs=90.8
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
.+..++..+.+++|| ++|..+... .+|++++|||+ ++.+|... ..|+..+..+. .+.|+++|+||+|+.
T Consensus 40 ~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~ 117 (171)
T cd00157 40 TVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC--PNVPIILVGTKIDLR 117 (171)
T ss_pred EEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEccHHhh
Confidence 456678889999999 555555444 89999999999 88999887 45888887655 589999999999997
Q ss_pred Ccc-----------cccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHH
Q psy14042 75 RAR-----------AVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILN 115 (238)
Q Consensus 75 ~~~-----------~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~ 115 (238)
... .+..+++..++...++ +|+++||++|.|++++|..|++
T Consensus 118 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 118 DDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 544 3456778888888887 9999999999999999999874
No 108
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.62 E-value=9.3e-16 Score=124.11 Aligned_cols=106 Identities=18% Similarity=0.223 Sum_probs=81.9
Q ss_pred eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS 81 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~ 81 (238)
..+++++|| ++|+.++.. ++|++|+|||+ ++++|+.+..|+.++.+.....+.|++||+||+||.... ..
T Consensus 55 ~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~ 132 (175)
T smart00177 55 KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KA 132 (175)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CH
Confidence 358899999 788887755 99999999999 999999999999888654323578999999999997532 22
Q ss_pred HHHHHHH-----HhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 82 QDAKNLA-----ASFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 82 ~~~~~~~-----~~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
++..... +...+.++++||++|.|++++|++|.+.+
T Consensus 133 ~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 133 AEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred HHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 2322221 12234577999999999999999998764
No 109
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.62 E-value=4.1e-15 Score=121.18 Aligned_cols=115 Identities=19% Similarity=0.232 Sum_probs=91.7
Q ss_pred CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc
Q psy14042 8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV 79 (238)
Q Consensus 8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v 79 (238)
++..+.+++|| ++|+.++.. ++|++|+|||. +..+|+.+..|+.++.+.....+.|++||+||+|+... +
T Consensus 48 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~ 125 (183)
T cd04152 48 NSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--L 125 (183)
T ss_pred CCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--C
Confidence 34678999999 678887766 89999999999 88999999999998877654468999999999999642 3
Q ss_pred cHHHHHHHHHh------CCCeEEEEccCCCCCHHHHHHHHHHHHHhhhccc
Q psy14042 80 SSQDAKNLAAS------FKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLV 124 (238)
Q Consensus 80 ~~~~~~~~~~~------~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~ 124 (238)
..++...+... .+++++++||++|.|++++|..|++.+.+.++..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~~~~ 176 (183)
T cd04152 126 SVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRRKML 176 (183)
T ss_pred CHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHHHhhh
Confidence 34444444321 2356899999999999999999999997766543
No 110
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.60 E-value=5.8e-15 Score=118.84 Aligned_cols=107 Identities=18% Similarity=0.177 Sum_probs=84.0
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
.+.++ .+.+++|| ++|+.++.. ++|++++|||. ++.+|.....|+..+.......+.|+++|+||+|+..
T Consensus 52 ~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 52 TLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG 129 (173)
T ss_pred EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc
Confidence 34554 37899999 666766654 99999999999 8899999999998886543336899999999999975
Q ss_pred cccccHHHHHHHHH-----hCCCeEEEEccCCCCCHHHHHHHHH
Q psy14042 76 ARAVSSQDAKNLAA-----SFKVKFIEVSVGIHHNVDELLVGIL 114 (238)
Q Consensus 76 ~~~v~~~~~~~~~~-----~~~~~~~evSA~t~~gv~elf~~i~ 114 (238)
.. ..+++..+.+ ..+++++++||++|.|++++|.+++
T Consensus 130 ~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 130 AL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred CC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence 43 3444544442 3467899999999999999999986
No 111
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.60 E-value=1.8e-15 Score=123.45 Aligned_cols=109 Identities=18% Similarity=0.215 Sum_probs=82.8
Q ss_pred eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS 81 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~ 81 (238)
..+.+++|| ++|+.++.. ++|++|+|||+ ++++|..+..++.++.......+.|++||+||.|+.... ..
T Consensus 59 ~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~ 136 (182)
T PTZ00133 59 KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--ST 136 (182)
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CH
Confidence 458899999 678877655 99999999999 999999998888877543323578999999999996432 22
Q ss_pred HHHHHHH-----HhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 82 QDAKNLA-----ASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 82 ~~~~~~~-----~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
++..... ....+.++++||++|.|++++|++|++.+..+
T Consensus 137 ~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 137 TEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred HHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHh
Confidence 2222211 11234577999999999999999999887654
No 112
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.59 E-value=3.2e-14 Score=118.68 Aligned_cols=115 Identities=14% Similarity=0.284 Sum_probs=95.7
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
++..+++.+.+++|| ++|+.++.. +++++|+|||+ ++.+|..+..|+..+.+.. .+.|+++||||+|+..
T Consensus 50 ~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 50 KFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKD 127 (215)
T ss_pred EEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCcc
Confidence 344578899999999 677777654 89999999999 9999999999999998765 6799999999999964
Q ss_pred cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 76 ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
. .+..+. ..+++..++.|+++||++|.|++++|.+|++.+...+.
T Consensus 128 ~-~~~~~~-~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 128 R-QVKARQ-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDPN 172 (215)
T ss_pred c-cCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhhccc
Confidence 3 333333 35677788999999999999999999999999876554
No 113
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.59 E-value=2e-14 Score=112.03 Aligned_cols=111 Identities=29% Similarity=0.492 Sum_probs=94.8
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+..++..+.+.+|| +.|+.+... ++|++|+|||. ++++++.+..|+..+..... ...|+++++||+|+.
T Consensus 40 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~ 118 (159)
T cd00154 40 KTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLE 118 (159)
T ss_pred EEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEccccc
Confidence 3456667789999999 455555544 89999999999 88999999999999887542 579999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGIL 114 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~ 114 (238)
.......++...++...+.+++++||+++.|++++|..|+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 119 DQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 6677778888899988999999999999999999999886
No 114
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=1.9e-14 Score=131.48 Aligned_cols=149 Identities=17% Similarity=0.169 Sum_probs=111.0
Q ss_pred CceEEEEEEEC-Cc---chHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCC
Q psy14042 28 DETGLIIVWML-YK---PSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGI 102 (238)
Q Consensus 28 ~ad~~IlV~dv-d~---~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t 102 (238)
.++++|+|+|+ +. ++++++..|+.+|..+... .++|++||+||+||... .+..+.+++..+.+++++||++
T Consensus 236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~t 311 (424)
T PRK12297 236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALT 311 (424)
T ss_pred hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCC
Confidence 79999999999 53 7899999999999988643 58999999999998532 2345666677778899999999
Q ss_pred CCCHHHHHHHHHHHHHhhhcccccCCCCCCCcCccCcceeecceEEeecccCc-eeeecccceeeeEEEEeCCCCCeEEE
Q psy14042 103 HHNVDELLVGILNQIRLKRSLVQTGGAQAAAPWKSNTTLVRASAVIVGSVDGN-RIWGKEFKKTSMLGVQWTSDSQNLLF 181 (238)
Q Consensus 103 ~~gv~elf~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-rv~g~~~~~~~~~~~~~~~~~~~~~~ 181 (238)
++|+++++..|.+.+.+.+................ .......+.+....+|. +|.|+.+++ ++.+++|+.++++.+|
T Consensus 312 geGI~eL~~~L~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~ 389 (424)
T PRK12297 312 GQGLDELLYAVAELLEETPEFPLEEEEVEEEVYYK-FEEEEKDFTITRDEDGVFVVSGEKIER-LFKMTNFNRDESLRRF 389 (424)
T ss_pred CCCHHHHHHHHHHHHHhCccccccccccccccccc-ccccCCCcEEEECCCCcEEEeChHHHH-HHhhccCCCHHHHHHH
Confidence 99999999999998877654321101111111111 11123456666566777 999999998 9999999999998776
Q ss_pred E
Q psy14042 182 A 182 (238)
Q Consensus 182 g 182 (238)
.
T Consensus 390 ~ 390 (424)
T PRK12297 390 A 390 (424)
T ss_pred H
Confidence 4
No 115
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.55 E-value=3.9e-14 Score=117.63 Aligned_cols=95 Identities=14% Similarity=0.168 Sum_probs=79.8
Q ss_pred CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhc------------------CCCCC
Q psy14042 9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEG------------------YLRTR 62 (238)
Q Consensus 9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~------------------~~~~~ 62 (238)
++.+.++||| ++|+.++.. ++|++|+|||+ ++.||+++..|+.++.+.. ...++
T Consensus 51 ~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (202)
T cd04102 51 EKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQI 130 (202)
T ss_pred CcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCc
Confidence 5789999999 888887765 99999999999 9999999999999997642 12478
Q ss_pred CEEEEEEeccCCCcccccHHH----HHHHHHhCCCeEEEEccCCC
Q psy14042 63 PAIIVANKIDLARARAVSSQD----AKNLAASFKVKFIEVSVGIH 103 (238)
Q Consensus 63 piilVgNK~DL~~~~~v~~~~----~~~~~~~~~~~~~evSA~t~ 103 (238)
|++|||||+||..++.++.+. ...+|++.+++.++.+++..
T Consensus 131 PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~ 175 (202)
T cd04102 131 PLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNG 175 (202)
T ss_pred eEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCc
Confidence 999999999998777666653 34568889999999988865
No 116
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.55 E-value=1.3e-14 Score=116.39 Aligned_cols=105 Identities=18% Similarity=0.172 Sum_probs=82.6
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH-
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS- 81 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~- 81 (238)
.+++++|| ++|+.++.. ++|++|+|||. ++.+|+.+..|+..+.+.....+.|++||+||+|++..+....
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i 121 (167)
T cd04161 42 KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADV 121 (167)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHH
Confidence 48899999 678877765 99999999999 8899999999999987754446899999999999976542211
Q ss_pred ---HHHHHHHHhCC--CeEEEEccCCC------CCHHHHHHHHHH
Q psy14042 82 ---QDAKNLAASFK--VKFIEVSVGIH------HNVDELLVGILN 115 (238)
Q Consensus 82 ---~~~~~~~~~~~--~~~~evSA~t~------~gv~elf~~i~~ 115 (238)
..+..++++.+ +.+++|||++| .|+++.|+||.+
T Consensus 122 ~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 122 IEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred HHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 12233443333 56888999998 899999999973
No 117
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.54 E-value=3.2e-14 Score=131.84 Aligned_cols=151 Identities=17% Similarity=0.159 Sum_probs=108.4
Q ss_pred CceEEEEEEEC-C----cchHHHHHHHHHHHHHhcC----------CCCCCEEEEEEeccCCCcccccHHHHHHHHHhCC
Q psy14042 28 DETGLIIVWML-Y----KPSYHRVEQDVIRLHEEGY----------LRTRPAIIVANKIDLARARAVSSQDAKNLAASFK 92 (238)
Q Consensus 28 ~ad~~IlV~dv-d----~~s~~~~~~~~~~l~~~~~----------~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~ 92 (238)
.++++|+|+|+ + +++++++..|..+|..+.. ..++|+|||+||+|+...+.+.. ......+..+
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e-~l~~~l~~~g 314 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAE-FVRPELEARG 314 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHH-HHHHHHHHcC
Confidence 79999999999 5 4688888888888877752 25799999999999975544322 2333334568
Q ss_pred CeEEEEccCCCCCHHHHHHHHHHHHHhhhcccccCCCCCCCcCccCcceeecceEEeeccc--Cc-eeeecccceeeeEE
Q psy14042 93 VKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGGAQAAAPWKSNTTLVRASAVIVGSVD--GN-RIWGKEFKKTSMLG 169 (238)
Q Consensus 93 ~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~-rv~g~~~~~~~~~~ 169 (238)
+++|++||+++.|+++++..|.+.+...+..... ... .......+......+.+....+ |. +|.|+.+++ ++.+
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~~~~-~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~v~g~~~e~-~~~~ 391 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEEARAAEPE-AEP-TRIVIRPKAVDDAGFTVERDGDGEGGFRVRGEKPER-WVRQ 391 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhcccCc-ccc-ccccccccccccCCcEEEeCCCCCCcEEEeCchHHH-HHhc
Confidence 8999999999999999999999998776543211 111 1001111111234466665555 66 999999999 9999
Q ss_pred EEeCCCCCeEEEE
Q psy14042 170 VQWTSDSQNLLFA 182 (238)
Q Consensus 170 ~~~~~~~~~~~~g 182 (238)
++|++++++.||.
T Consensus 392 ~~~~~~e~~~~~~ 404 (500)
T PRK12296 392 TDFDNDEAVGYLA 404 (500)
T ss_pred cCCCCHHHHHHHH
Confidence 9999999987774
No 118
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.52 E-value=2.5e-14 Score=113.00 Aligned_cols=105 Identities=18% Similarity=0.184 Sum_probs=80.2
Q ss_pred CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC--CCCCCEEEEEEeccCCCccc
Q psy14042 9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY--LRTRPAIIVANKIDLARARA 78 (238)
Q Consensus 9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~--~~~~piilVgNK~DL~~~~~ 78 (238)
...+++++|| ++|+.++.. ++|++|+|+|. ++.+|.....|+..+.+... ..+.|+++|+||+|+.....
T Consensus 42 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~ 121 (162)
T cd04157 42 KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT 121 (162)
T ss_pred ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC
Confidence 3458899999 777777665 99999999999 89999999999888866432 25799999999999975321
Q ss_pred ccHHHHHHHHH-----hCCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042 79 VSSQDAKNLAA-----SFKVKFIEVSVGIHHNVDELLVGILN 115 (238)
Q Consensus 79 v~~~~~~~~~~-----~~~~~~~evSA~t~~gv~elf~~i~~ 115 (238)
.++...... ...++++++||++|.|++++|.+|.+
T Consensus 122 --~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 122 --AVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred --HHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 222222211 12346899999999999999999874
No 119
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.52 E-value=7.1e-14 Score=113.93 Aligned_cols=109 Identities=18% Similarity=0.231 Sum_probs=85.0
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
.+.+++ +.+.+|| ++++.++.. +++++++|+|+ +..+|.....|+.++.+.....+.|+++++||+|+..
T Consensus 57 ~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 57 ELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred EEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 345554 6789999 556665543 99999999999 8999999988988887654346799999999999964
Q ss_pred cccccHHHHHHHHHh----------------CCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 76 ARAVSSQDAKNLAAS----------------FKVKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 76 ~~~v~~~~~~~~~~~----------------~~~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
.+..++++.+... ..+++++|||++|+|++++|++|++.
T Consensus 135 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 135 --AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred --CcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 4555666665542 22469999999999999999999864
No 120
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.52 E-value=5.3e-14 Score=111.18 Aligned_cols=104 Identities=13% Similarity=0.238 Sum_probs=79.7
Q ss_pred eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS 81 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~ 81 (238)
..+.+.+|| ++|+.++.. ++|++|+|+|. +..+|..+..|+.++.+.....+.|+++|+||+|+.... ..
T Consensus 42 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~ 119 (160)
T cd04156 42 KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TA 119 (160)
T ss_pred CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CH
Confidence 458899999 566665544 89999999999 888999999999988764433689999999999996421 22
Q ss_pred HHHHH------HHHhCCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042 82 QDAKN------LAASFKVKFIEVSVGIHHNVDELLVGILN 115 (238)
Q Consensus 82 ~~~~~------~~~~~~~~~~evSA~t~~gv~elf~~i~~ 115 (238)
++... ++...++++++|||++|.|++++|+.|++
T Consensus 120 ~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 120 EEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 22222 22224567999999999999999999863
No 121
>KOG4252|consensus
Probab=99.52 E-value=1.3e-15 Score=121.37 Aligned_cols=118 Identities=18% Similarity=0.349 Sum_probs=108.4
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
.+++++..+++.+|| |.|.+++.. +|++.++||+. |+.||+.+..|.+++.... .++|.++|-||+||.+
T Consensus 61 qi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlve 138 (246)
T KOG4252|consen 61 QIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVE 138 (246)
T ss_pred HHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhH
Confidence 456667778889999 889999766 99999999999 9999999999999998876 8999999999999999
Q ss_pred cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042 76 ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL 123 (238)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~ 123 (238)
+..+...+.+.+++...+.+|.+|++...||-.+|..|++.+.+....
T Consensus 139 ds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 139 DSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred hhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998877655
No 122
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.51 E-value=2.3e-14 Score=113.50 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=77.5
Q ss_pred CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc
Q psy14042 9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS 80 (238)
Q Consensus 9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~ 80 (238)
...+++++|| ++|+.++.. ++|++|+|+|. ++.++.....++..+.+.....+.|++||+||+|+.... .
T Consensus 40 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~ 117 (158)
T cd04151 40 YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--S 117 (158)
T ss_pred ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--C
Confidence 3458899999 677777655 99999999999 888888777766665443223579999999999997432 1
Q ss_pred HHHHHH-HH----HhCCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042 81 SQDAKN-LA----ASFKVKFIEVSVGIHHNVDELLVGILN 115 (238)
Q Consensus 81 ~~~~~~-~~----~~~~~~~~evSA~t~~gv~elf~~i~~ 115 (238)
..+..+ +. +..+.+++++||++|.|++++|+.|++
T Consensus 118 ~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 118 EAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 222222 11 122457999999999999999999974
No 123
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.51 E-value=8.4e-14 Score=112.39 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=80.2
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ 82 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~ 82 (238)
.+++.+|| ++|+.++.. ++|++|+|+|. ++++|...+.++.++.+.....++|+++++||+|+... +..+
T Consensus 58 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~ 135 (174)
T cd04153 58 NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPA 135 (174)
T ss_pred CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHH
Confidence 48899999 667666654 99999999999 88999999888888766543467999999999999652 2233
Q ss_pred HH-HHHH----HhCCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042 83 DA-KNLA----ASFKVKFIEVSVGIHHNVDELLVGILN 115 (238)
Q Consensus 83 ~~-~~~~----~~~~~~~~evSA~t~~gv~elf~~i~~ 115 (238)
+. ..+. +..+++++++||++|.|++++|.+|++
T Consensus 136 ~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 136 EISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred HHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 32 2222 234568999999999999999999973
No 124
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.49 E-value=1e-13 Score=109.37 Aligned_cols=103 Identities=22% Similarity=0.266 Sum_probs=81.3
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ 82 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~ 82 (238)
.+.+.+|| ++|+.++.. ++|++++|||+ ++++|.....|+..+.+.....+.|+++|+||+|+.... ..+
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~ 119 (158)
T cd00878 42 NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVS 119 (158)
T ss_pred CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHH
Confidence 47899999 666666654 99999999999 888999999999888765444789999999999997643 222
Q ss_pred HHHHHH-----HhCCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042 83 DAKNLA-----ASFKVKFIEVSVGIHHNVDELLVGILN 115 (238)
Q Consensus 83 ~~~~~~-----~~~~~~~~evSA~t~~gv~elf~~i~~ 115 (238)
+..... ....++++++||++|.|++++|..|..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 120 ELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 333322 224568999999999999999999874
No 125
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.48 E-value=3.4e-13 Score=107.25 Aligned_cols=103 Identities=20% Similarity=0.253 Sum_probs=80.9
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ 82 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~ 82 (238)
.+.+.+|| ++|+.++.. ++|++++|+|. +.+++.....|+..+.+.....+.|+++|+||+|+... ...+
T Consensus 49 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~ 126 (167)
T cd04160 49 NARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVE 126 (167)
T ss_pred CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHH
Confidence 47899999 566666544 99999999999 88899999999998876543468999999999998653 2333
Q ss_pred HHHHHHHh-------CCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042 83 DAKNLAAS-------FKVKFIEVSVGIHHNVDELLVGILN 115 (238)
Q Consensus 83 ~~~~~~~~-------~~~~~~evSA~t~~gv~elf~~i~~ 115 (238)
+...+.+. .+++++++||++|.|+++++++|++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 127 EIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred HHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 44443322 3468999999999999999999974
No 126
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.44 E-value=9.5e-13 Score=112.46 Aligned_cols=92 Identities=20% Similarity=0.258 Sum_probs=77.6
Q ss_pred CCCcccccC---CceEEEEEEEC-Ccc-hHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC
Q psy14042 19 EQYEKLTSS---DETGLIIVWML-YKP-SYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV 93 (238)
Q Consensus 19 e~~~~l~~~---~ad~~IlV~dv-d~~-s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~ 93 (238)
|||+.|.+. ++|++++|||+ ++. +|+.+..|+..+.. .++|++||+||+||...+++..++...+. ..++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~ 98 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGY 98 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCC
Confidence 899988876 99999999999 666 99999999987754 67999999999999766655555555554 4789
Q ss_pred eEEEEccCCCCCHHHHHHHHHH
Q psy14042 94 KFIEVSVGIHHNVDELLVGILN 115 (238)
Q Consensus 94 ~~~evSA~t~~gv~elf~~i~~ 115 (238)
+++++||++|.|++++|..+..
T Consensus 99 ~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 99 QVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred eEEEEecCCchhHHHHHhhhcC
Confidence 9999999999999999998763
No 127
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.44 E-value=9.6e-13 Score=105.93 Aligned_cols=103 Identities=19% Similarity=0.193 Sum_probs=78.7
Q ss_pred CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc
Q psy14042 8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV 79 (238)
Q Consensus 8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v 79 (238)
++..+.+++|| ++|+.++.. ++|++|+|||. +..+++....|.... . .++|+++|+||+|+...+
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~~-- 135 (179)
T cd01890 63 DGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSAD-- 135 (179)
T ss_pred CCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcCC--
Confidence 66789999999 677666554 99999999999 777777766664322 2 568999999999996432
Q ss_pred cHHHHHHHHHhCCC---eEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 80 SSQDAKNLAASFKV---KFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 80 ~~~~~~~~~~~~~~---~~~evSA~t~~gv~elf~~i~~~l 117 (238)
..+...++++.+++ +++++||++|.|++++|..|++.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 136 PERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 22234456666665 489999999999999999998764
No 128
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.44 E-value=1e-12 Score=116.96 Aligned_cols=94 Identities=19% Similarity=0.130 Sum_probs=79.3
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHN 105 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~g 105 (238)
.++++|+|+|+ +.++++++..|..++..+... .++|+++|+||+|+.....+..+....+++..+.+++++||++++|
T Consensus 236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~G 315 (335)
T PRK12299 236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEG 315 (335)
T ss_pred hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCC
Confidence 79999999999 777999999999999888643 5799999999999976655554455555666778999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy14042 106 VDELLVGILNQIRLKR 121 (238)
Q Consensus 106 v~elf~~i~~~l~~~~ 121 (238)
++++|..|.+.+.+.+
T Consensus 316 I~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 316 LDELLRALWELLEEAR 331 (335)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999998886644
No 129
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.43 E-value=9.7e-13 Score=104.73 Aligned_cols=86 Identities=15% Similarity=0.121 Sum_probs=68.2
Q ss_pred CceEEEEEEEC-Ccch--HHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCC
Q psy14042 28 DETGLIIVWML-YKPS--YHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHH 104 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s--~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~ 104 (238)
.+|++|+|+|. ++.+ ++....|+..+++.. .+.|+++|+||+|+...+.+.. ...+++..+.+++++||++|.
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~ 154 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEE 154 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccC
Confidence 46899999999 6654 466677888887643 5899999999999976554433 445555567889999999999
Q ss_pred CHHHHHHHHHHHH
Q psy14042 105 NVDELLVGILNQI 117 (238)
Q Consensus 105 gv~elf~~i~~~l 117 (238)
|++++|+.+.+.+
T Consensus 155 gi~~l~~~l~~~~ 167 (168)
T cd01897 155 GVDEVKNKACELL 167 (168)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 130
>PLN00023 GTP-binding protein; Provisional
Probab=99.41 E-value=1.4e-12 Score=114.72 Aligned_cols=85 Identities=19% Similarity=0.264 Sum_probs=71.8
Q ss_pred CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC-----------CCCCCEEEEEE
Q psy14042 9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY-----------LRTRPAIIVAN 69 (238)
Q Consensus 9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~-----------~~~~piilVgN 69 (238)
++.+.++||| ++|+.++.. +++++|+|||+ ++.+|+++..|+.++.+... ..++|++||||
T Consensus 80 ~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGN 159 (334)
T PLN00023 80 ERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGN 159 (334)
T ss_pred CceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEE
Confidence 3579999999 899998876 99999999999 99999999999999987631 13589999999
Q ss_pred eccCCCcc---c---ccHHHHHHHHHhCCC
Q psy14042 70 KIDLARAR---A---VSSQDAKNLAASFKV 93 (238)
Q Consensus 70 K~DL~~~~---~---v~~~~~~~~~~~~~~ 93 (238)
|+||..++ . +..++++++|++.++
T Consensus 160 K~DL~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 160 KADIAPKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred CccccccccccccccccHHHHHHHHHHcCC
Confidence 99997543 2 357899999998873
No 131
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.41 E-value=2.1e-12 Score=102.82 Aligned_cols=104 Identities=19% Similarity=0.120 Sum_probs=79.7
Q ss_pred EEEEEEe-C-------CCcccccC------CceEEEEEEEC-Cc-chHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccCC
Q psy14042 12 VRAIIWN-E-------QYEKLTSS------DETGLIIVWML-YK-PSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDLA 74 (238)
Q Consensus 12 v~l~iWD-e-------~~~~l~~~------~ad~~IlV~dv-d~-~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~ 74 (238)
+.+.+|| . .++.+... .+|++++|+|. +. ++++.+..|.+++...... ...|+++|+||+|+.
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 127 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL 127 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence 5899999 1 11222221 69999999999 78 7999999999999876432 578999999999997
Q ss_pred CcccccHHHHHHHHHh-CCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAAS-FKVKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~-~~~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
....+. +....+... .+.+++++||+++.|++++|+.+++.
T Consensus 128 ~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 128 DEEELF-ELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CchhhH-HHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 655443 334444555 47889999999999999999999864
No 132
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.40 E-value=5.3e-12 Score=102.33 Aligned_cols=109 Identities=25% Similarity=0.338 Sum_probs=87.1
Q ss_pred EEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042 5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA 76 (238)
Q Consensus 5 i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~ 76 (238)
+..++ +++.+|| +.++.+|+. ++|++|+|.|. +.+.+......+.++.......+.|+++++||.|++..
T Consensus 53 i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 53 IKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp EEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred eeeCc--EEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc
Confidence 44544 6789999 678899987 99999999999 89999999998888877554478999999999998753
Q ss_pred ccccHHHHHHHHH------hCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 77 RAVSSQDAKNLAA------SFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 77 ~~v~~~~~~~~~~------~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
...++...... ...+.++.|||.+|+|+.+.|++|.+++
T Consensus 131 --~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 131 --MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp --STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred --chhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 33444443321 3456789999999999999999999764
No 133
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.39 E-value=2.1e-12 Score=105.37 Aligned_cols=104 Identities=17% Similarity=0.191 Sum_probs=81.0
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ 82 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~ 82 (238)
.+++.+|| ++++.++.. ++|++|+|+|. ++++|.....++.++.+.....+.|+++|+||+|++. .++.+
T Consensus 60 ~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~ 137 (184)
T smart00178 60 NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASED 137 (184)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHH
Confidence 37889999 566666655 99999999999 9999999998888876543336799999999999964 34555
Q ss_pred HHHHHHHh------------CCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 83 DAKNLAAS------------FKVKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 83 ~~~~~~~~------------~~~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
++++.... ....+++|||++|.|+++++++|...
T Consensus 138 ~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 138 ELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred HHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 55443311 13458999999999999999999754
No 134
>KOG0073|consensus
Probab=99.38 E-value=5.4e-12 Score=99.41 Aligned_cols=115 Identities=21% Similarity=0.256 Sum_probs=94.1
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
|+++..+ ++++||| -.+|+.|+. .+||+|+|+|. |+..|+.....+.++.........|+++++||.|++
T Consensus 53 ktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 53 KTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred EEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 3445544 8999999 677888877 99999999999 999999999988888775545789999999999997
Q ss_pred C---cccccH-HHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 75 R---ARAVSS-QDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 75 ~---~~~v~~-~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
. .+++.+ -....+++...++.+-|||.+|+++.+.+.+++..+.+
T Consensus 131 ~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 131 GALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred cccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHH
Confidence 3 222322 24556667888999999999999999999999988876
No 135
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.34 E-value=4e-12 Score=99.10 Aligned_cols=103 Identities=17% Similarity=0.272 Sum_probs=78.3
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ 82 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~ 82 (238)
.+.+.+|| ++|+.++.. ++|++++|+|+ +..+|.....|+.++.......+.|+++|+||+|+.......
T Consensus 43 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~-- 120 (159)
T cd04159 43 NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVD-- 120 (159)
T ss_pred CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHH--
Confidence 38899999 566666554 99999999999 888999888888887654333688999999999987543221
Q ss_pred HHHHH-----HHhCCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042 83 DAKNL-----AASFKVKFIEVSVGIHHNVDELLVGILN 115 (238)
Q Consensus 83 ~~~~~-----~~~~~~~~~evSA~t~~gv~elf~~i~~ 115 (238)
+.... .....++++++||++|.|++++|..|++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 121 ELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 11111 1123468999999999999999999874
No 136
>KOG0070|consensus
Probab=99.31 E-value=1.7e-11 Score=98.40 Aligned_cols=112 Identities=21% Similarity=0.255 Sum_probs=90.9
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
++++. ++++.+|| +++|.+|.. +++++|+|.|. |++.+..++..+..+.......+.|+++.+||.|++.
T Consensus 55 ~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~ 132 (181)
T KOG0070|consen 55 TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG 132 (181)
T ss_pred EEEEc--ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc
Confidence 34444 69999999 999999988 99999999999 9999999999998888776568999999999999975
Q ss_pred cccccHHHHHHH-----HHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 76 ARAVSSQDAKNL-----AASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 76 ~~~v~~~~~~~~-----~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
.-. ..++... .....+.+..|+|.+|+|+.|.++++...+..
T Consensus 133 als--~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 133 ALS--AAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred cCC--HHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence 432 2233222 22345668899999999999999999987754
No 137
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.28 E-value=2.9e-11 Score=107.57 Aligned_cols=89 Identities=20% Similarity=0.172 Sum_probs=74.0
Q ss_pred CceEEEEEEEC-Cc---chHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCC
Q psy14042 28 DETGLIIVWML-YK---PSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGI 102 (238)
Q Consensus 28 ~ad~~IlV~dv-d~---~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t 102 (238)
.++++|+|+|+ +. ++++.+..|..++..+... .+.|++||+||+|+..... ..+..+.+++..+.+++++||++
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAkt 313 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALT 313 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccC
Confidence 79999999999 65 7999999999999887532 5799999999999976543 23445566667788999999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy14042 103 HHNVDELLVGILNQI 117 (238)
Q Consensus 103 ~~gv~elf~~i~~~l 117 (238)
++|+++++..|.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998754
No 138
>KOG1673|consensus
Probab=99.28 E-value=4.7e-11 Score=93.42 Aligned_cols=119 Identities=15% Similarity=0.261 Sum_probs=98.6
Q ss_pred CccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042 1 MNQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKID 72 (238)
Q Consensus 1 ~~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~D 72 (238)
|.|++.+.|..+.+.||| ++|..+.+. ++-+++++||+ .+.++..+..|+.+.+... ...+| |+||+|.|
T Consensus 58 mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~N-ktAiP-ilvGTKyD 135 (205)
T KOG1673|consen 58 MDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLN-KTAIP-ILVGTKYD 135 (205)
T ss_pred eeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccC-Cccce-EEeccchH
Confidence 679999999999999999 888888877 99999999999 9999999999999987654 13344 68999999
Q ss_pred CC-----CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 73 LA-----RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 73 L~-----~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
+- +.++-...+++..|+..+.+.|.||+..+.||..+|.-+...+...+
T Consensus 136 ~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFnL~ 189 (205)
T KOG1673|consen 136 LFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFNLP 189 (205)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhCCc
Confidence 73 22222334778889999999999999999999999998887775543
No 139
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.28 E-value=3.2e-11 Score=96.49 Aligned_cols=105 Identities=20% Similarity=0.270 Sum_probs=76.5
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
.+..++ ..+.+|| +++..++.. +++++++|+|+ +..+|.....|+..+.+.....++|+++++||+|+..
T Consensus 52 ~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 52 TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLAT 129 (173)
T ss_pred EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCcc
Confidence 344454 6789999 344444433 89999999999 8889998888887776543336799999999999965
Q ss_pred cccccHHHHHHHHHhCC--------CeEEEEccCCCCCHHHHHHHHHH
Q psy14042 76 ARAVSSQDAKNLAASFK--------VKFIEVSVGIHHNVDELLVGILN 115 (238)
Q Consensus 76 ~~~v~~~~~~~~~~~~~--------~~~~evSA~t~~gv~elf~~i~~ 115 (238)
... . ..+.+..+ .+++++||++|+|++++|++|++
T Consensus 130 ~~~--~---~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 130 AAP--A---EEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CCC--H---HHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 332 1 12222222 25789999999999999999974
No 140
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.23 E-value=6.6e-11 Score=94.50 Aligned_cols=89 Identities=21% Similarity=0.219 Sum_probs=70.6
Q ss_pred CceEEEEEEEC-Cc------chHHHHHHHHHHHHHhcCC------CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCe
Q psy14042 28 DETGLIIVWML-YK------PSYHRVEQDVIRLHEEGYL------RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVK 94 (238)
Q Consensus 28 ~ad~~IlV~dv-d~------~s~~~~~~~~~~l~~~~~~------~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~ 94 (238)
++|++++|+|. +. .+++....|..++...... .+.|+++|+||+|+..................+.+
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAE 153 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCC
Confidence 89999999999 76 5898888898888765421 47999999999999766554443333444556778
Q ss_pred EEEEccCCCCCHHHHHHHHHHH
Q psy14042 95 FIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 95 ~~evSA~t~~gv~elf~~i~~~ 116 (238)
++++||+++.|++++++.+++.
T Consensus 154 ~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 154 VVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EEEEehhhhcCHHHHHHHHHhh
Confidence 9999999999999999998753
No 141
>KOG3883|consensus
Probab=99.23 E-value=1.2e-10 Score=91.03 Aligned_cols=110 Identities=20% Similarity=0.228 Sum_probs=95.5
Q ss_pred CeEEEEEEEe----CCC-cccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc
Q psy14042 9 SGKVRAIIWN----EQY-EKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV 79 (238)
Q Consensus 9 ~~~v~l~iWD----e~~-~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v 79 (238)
|..=.|.++| ..+ ..|-.+ -+|++++||+. |++||+.+..+..+|.+..+...+|++++|||+|+.+++++
T Consensus 57 garE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~v 136 (198)
T KOG3883|consen 57 GAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREV 136 (198)
T ss_pred ChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhc
Confidence 4445678899 333 333333 79999999999 99999999988888888877789999999999999999999
Q ss_pred cHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 80 SSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 80 ~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
..+.+..+|+...+..++++|.....+-+.|..++..+.
T Consensus 137 d~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~ 175 (198)
T KOG3883|consen 137 DMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLH 175 (198)
T ss_pred CHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhcc
Confidence 999999999999999999999999999999999987664
No 142
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.22 E-value=8.4e-11 Score=92.69 Aligned_cols=102 Identities=15% Similarity=0.106 Sum_probs=66.0
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc--ccH
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA--VSS 81 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~--v~~ 81 (238)
...+++|| ++|...... ++|++++|+|.+..........+..+... ...|+++|+||+|+..... ...
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~ 126 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELL---GIKRGLVVLTKADLVDEDWLELVE 126 (164)
T ss_pred CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHh---CCCcEEEEEECccccCHHHHHHHH
Confidence 35789999 566443322 89999999999322222222222222221 2349999999999975432 122
Q ss_pred HHHHHHHHh---CCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042 82 QDAKNLAAS---FKVKFIEVSVGIHHNVDELLVGILN 115 (238)
Q Consensus 82 ~~~~~~~~~---~~~~~~evSA~t~~gv~elf~~i~~ 115 (238)
++..+..+. .+.+++++||+++.|++++|..+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 127 EEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 334444433 4678999999999999999998763
No 143
>KOG0075|consensus
Probab=99.19 E-value=4.9e-11 Score=92.51 Aligned_cols=113 Identities=17% Similarity=0.231 Sum_probs=89.3
Q ss_pred EECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc-
Q psy14042 6 QGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA- 76 (238)
Q Consensus 6 ~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~- 76 (238)
+++.+.+.+.+|| .+|+++|.. +.+++++|.|. |++.++..+.-+..+........+|+++.|||.|++..
T Consensus 59 k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL 138 (186)
T KOG0075|consen 59 KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL 138 (186)
T ss_pred EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc
Confidence 4567789999999 899999977 99999999999 99999999888888776554589999999999999753
Q ss_pred --ccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 77 --RAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 77 --~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
..+.+..+..-.....+..|.+|++...|++.+.++|+++-.
T Consensus 139 ~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 139 SKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred cHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 111222222222334567899999999999999999997654
No 144
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.19 E-value=2.1e-10 Score=95.35 Aligned_cols=117 Identities=23% Similarity=0.321 Sum_probs=89.5
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-C-cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-Y-KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d-~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
++..++..+++++|| ++|+.++.. +++++++|||. + ..+++....|..++....+ .+.|+++|+||+||.
T Consensus 46 ~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl~ 124 (219)
T COG1100 46 TIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP-DDVPILLVGNKIDLF 124 (219)
T ss_pred EEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC-CCceEEEEecccccc
Confidence 344455588999999 888888866 99999999999 6 6777777899999887653 579999999999998
Q ss_pred Cccc------------ccHHHHHHHHHh---CCCeEEEEccC--CCCCHHHHHHHHHHHHHhhh
Q psy14042 75 RARA------------VSSQDAKNLAAS---FKVKFIEVSVG--IHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 75 ~~~~------------v~~~~~~~~~~~---~~~~~~evSA~--t~~gv~elf~~i~~~l~~~~ 121 (238)
.... .........+.. ....++++|++ ++.++.++|..+.+.+....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 125 DEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred cchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhh
Confidence 6632 222222222222 23349999999 99999999999999987654
No 145
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.18 E-value=3.7e-10 Score=87.22 Aligned_cols=108 Identities=17% Similarity=0.196 Sum_probs=81.8
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-Cc-chHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YK-PSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~-~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
.+..++..+.+.+|| ++|+.++.. ++++++.++|+ .. .++.... .|...+..... .+.|+++|+||+|+
T Consensus 42 ~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~ 120 (161)
T TIGR00231 42 VIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDL 120 (161)
T ss_pred EEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccC
Confidence 356677778999999 566666554 88999999999 55 7777765 77777776653 28899999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHH
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i 113 (238)
.... ........+......+++++||+++.|++++|..|
T Consensus 121 ~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 121 RDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred Ccch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 7644 33333344444456789999999999999999876
No 146
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.18 E-value=1.1e-10 Score=96.42 Aligned_cols=83 Identities=24% Similarity=0.193 Sum_probs=66.9
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV 106 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv 106 (238)
++|++++|+|. ++.++.....|...+.... ..+.|+++|+||+|+....... ..+...+.+++++||+++.|+
T Consensus 120 ~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~-~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi 193 (204)
T cd01878 120 EADLLLHVVDASDPDYEEQIETVEKVLKELG-AEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGEGL 193 (204)
T ss_pred cCCeEEEEEECCCCChhhHHHHHHHHHHHcC-cCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCCCH
Confidence 79999999999 8888888888887776543 3578999999999997544322 334455678999999999999
Q ss_pred HHHHHHHHHH
Q psy14042 107 DELLVGILNQ 116 (238)
Q Consensus 107 ~elf~~i~~~ 116 (238)
+++|..|.+.
T Consensus 194 ~~l~~~L~~~ 203 (204)
T cd01878 194 DELLEAIEEL 203 (204)
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 147
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.18 E-value=7.1e-11 Score=91.63 Aligned_cols=78 Identities=22% Similarity=0.152 Sum_probs=61.7
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC-eEEEEccCCCCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV-KFIEVSVGIHHN 105 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~g 105 (238)
++|++|+|||+ ++.++.. ..|... ...|+++|+||+||.. +....+++.++++..+. +++++||++|.|
T Consensus 62 ~ad~vilv~d~~~~~s~~~-~~~~~~-------~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 132 (142)
T TIGR02528 62 DADVIALVQSATDPESRFP-PGFASI-------FVKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQG 132 (142)
T ss_pred cCCEEEEEecCCCCCcCCC-hhHHHh-------ccCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCC
Confidence 99999999999 8888765 334332 1249999999999965 33455667777777776 799999999999
Q ss_pred HHHHHHHHH
Q psy14042 106 VDELLVGIL 114 (238)
Q Consensus 106 v~elf~~i~ 114 (238)
++++|..++
T Consensus 133 i~~l~~~l~ 141 (142)
T TIGR02528 133 LEALVDYLN 141 (142)
T ss_pred HHHHHHHHh
Confidence 999999875
No 148
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.17 E-value=5.7e-10 Score=85.05 Aligned_cols=109 Identities=29% Similarity=0.474 Sum_probs=80.3
Q ss_pred EECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc
Q psy14042 6 QGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR 77 (238)
Q Consensus 6 ~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~ 77 (238)
...+....+.+|| ..+...... ++|++++|+|. +..++.....|.............|+++|+||+|+....
T Consensus 39 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~ 118 (157)
T cd00882 39 EVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEER 118 (157)
T ss_pred EECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccccc
Confidence 3445678999999 333333222 89999999999 888898888874333333334789999999999997654
Q ss_pred cccHHH-HHHHHHhCCCeEEEEccCCCCCHHHHHHHHH
Q psy14042 78 AVSSQD-AKNLAASFKVKFIEVSVGIHHNVDELLVGIL 114 (238)
Q Consensus 78 ~v~~~~-~~~~~~~~~~~~~evSA~t~~gv~elf~~i~ 114 (238)
...... ........+.+++++|+..+.|+++++++|.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 119 VVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred chHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 433332 3445556678999999999999999999886
No 149
>KOG0096|consensus
Probab=99.16 E-value=4.1e-11 Score=96.61 Aligned_cols=109 Identities=17% Similarity=0.294 Sum_probs=89.1
Q ss_pred eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS 81 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~ 81 (238)
+.|++..|| |+|--+... ++.++||+||+ .+-++.++..|..++.+.. .++||+++|||.|...... .
T Consensus 57 g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~--k 132 (216)
T KOG0096|consen 57 GQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKV--K 132 (216)
T ss_pred CcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceecccccc--c
Confidence 369999999 788766665 99999999999 9999999999999998877 7799999999999875431 1
Q ss_pred HHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 82 QDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 82 ~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
...-.+-...++.||++||+++.|.+..|.++++.+...+.
T Consensus 133 ~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G~p~ 173 (216)
T KOG0096|consen 133 AKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTGDPS 173 (216)
T ss_pred cccceeeecccceeEEeecccccccccchHHHhhhhcCCCC
Confidence 11122334457889999999999999999999988865543
No 150
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.16 E-value=1.3e-10 Score=95.48 Aligned_cols=101 Identities=14% Similarity=0.066 Sum_probs=69.8
Q ss_pred EEECCeEEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc
Q psy14042 5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR 77 (238)
Q Consensus 5 i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~ 77 (238)
+.++.+.+.+++|| ++|..+... ++|++++|||.....+.....++..+.. .++|+++|+||+|+...+
T Consensus 58 ~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~ 133 (194)
T cd01891 58 TAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE----LGLKPIVVINKIDRPDAR 133 (194)
T ss_pred eEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH----cCCCEEEEEECCCCCCCC
Confidence 34555678999999 677766554 9999999999933345555555555543 578999999999996533
Q ss_pred c-ccHHHHHHHHH-------hCCCeEEEEccCCCCCHHHH
Q psy14042 78 A-VSSQDAKNLAA-------SFKVKFIEVSVGIHHNVDEL 109 (238)
Q Consensus 78 ~-v~~~~~~~~~~-------~~~~~~~evSA~t~~gv~el 109 (238)
. ...++...+.+ ..+++++++||++|.|+.++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 134 PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred HHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 2 12334444442 23678999999999777433
No 151
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.15 E-value=6.9e-10 Score=86.98 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=75.4
Q ss_pred EEEECCeEEEEEEEe----CCCccc------cc-----CCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEE
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKL------TS-----SDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIV 67 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l------~~-----~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilV 67 (238)
.+++++ ..+.+|| +.|..+ .. .++|++|+|+|. +.... ..|...+.+ .++|+++|
T Consensus 37 ~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~---~~~~~~~~~----~~~~~iiv 107 (158)
T cd01879 37 RFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERN---LYLTLQLLE----LGLPVVVA 107 (158)
T ss_pred EEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhH---HHHHHHHHH----cCCCEEEE
Confidence 455655 5789999 444432 11 289999999999 54332 345555544 46899999
Q ss_pred EEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 68 ANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 68 gNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
+||+|+.....+.. +...+++..+.+++++||.++.|++++|..+.+.
T Consensus 108 ~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 108 LNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred Eehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence 99999976554443 3456777788999999999999999999999865
No 152
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.09 E-value=5.9e-10 Score=103.78 Aligned_cols=89 Identities=15% Similarity=0.081 Sum_probs=65.1
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc--ccHHHHHH-HHHhCCCeEEEEccCCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA--VSSQDAKN-LAASFKVKFIEVSVGIH 103 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~--v~~~~~~~-~~~~~~~~~~evSA~t~ 103 (238)
++|++|+|+|. +..++++.. ++..+.. .+.|+|||+||+||..... ....+... +.....++++++||++|
T Consensus 293 ~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g 367 (472)
T PRK03003 293 AAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTG 367 (472)
T ss_pred cCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCC
Confidence 89999999999 888888774 4454443 5789999999999964321 11122222 22223478999999999
Q ss_pred CCHHHHHHHHHHHHHhhh
Q psy14042 104 HNVDELLVGILNQIRLKR 121 (238)
Q Consensus 104 ~gv~elf~~i~~~l~~~~ 121 (238)
.|++++|..+.+.+....
T Consensus 368 ~gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 368 RAVDKLVPALETALESWD 385 (472)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999998776443
No 153
>KOG4423|consensus
Probab=99.08 E-value=9.3e-11 Score=94.34 Aligned_cols=113 Identities=19% Similarity=0.297 Sum_probs=93.9
Q ss_pred eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC---CCCCCEEEEEEeccCCCccc
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY---LRTRPAIIVANKIDLARARA 78 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~---~~~~piilVgNK~DL~~~~~ 78 (238)
..|++++|| |+|-.|+.- .+.+..+|||+ ...+|+.+..|..++..... ...+|+|+.+||||......
T Consensus 73 t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~ 152 (229)
T KOG4423|consen 73 TIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK 152 (229)
T ss_pred HHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhh
Confidence 348899999 888778765 99999999999 89999999999999865432 24678999999999975433
Q ss_pred cc-HHHHHHHHHhCCCe-EEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 79 VS-SQDAKNLAASFKVK-FIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 79 v~-~~~~~~~~~~~~~~-~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
.. .....++.+++|+. ++++|+|.+.+++|+-..+++++.-+..
T Consensus 153 ~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd~ 198 (229)
T KOG4423|consen 153 NEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVNDE 198 (229)
T ss_pred hhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhhcc
Confidence 32 46788889999975 9999999999999999999999876653
No 154
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.06 E-value=8.7e-10 Score=105.15 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=78.4
Q ss_pred CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc
Q psy14042 8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV 79 (238)
Q Consensus 8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v 79 (238)
++..+++++|| ++|...+.. .+|++|+|+|. +..+++....|...+. .+.|+++|+||+|+....
T Consensus 66 ~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-----~~ipiIiViNKiDl~~~~-- 138 (595)
T TIGR01393 66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-----NDLEIIPVINKIDLPSAD-- 138 (595)
T ss_pred CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCCccC--
Confidence 56779999999 667655544 99999999999 7666776666654332 468999999999996432
Q ss_pred cHHHHHHHHHhCCC---eEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 80 SSQDAKNLAASFKV---KFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 80 ~~~~~~~~~~~~~~---~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
......++++.+++ +++++||++|.|++++|+.|++.++
T Consensus 139 ~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 139 PERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred HHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 12233455555565 4899999999999999999998764
No 155
>KOG0071|consensus
Probab=99.06 E-value=4.2e-10 Score=86.77 Aligned_cols=106 Identities=19% Similarity=0.219 Sum_probs=86.7
Q ss_pred eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS 81 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~ 81 (238)
+++++++|| ++.|.+|+. ++.++|+|.|. +++..+.++.-+..+.+.....+.|+++.+||.|++... ++
T Consensus 59 kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~p 136 (180)
T KOG0071|consen 59 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KP 136 (180)
T ss_pred eeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CH
Confidence 568999999 899999988 99999999999 999999998888887766656899999999999998643 33
Q ss_pred HHHHHH-----HHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 82 QDAKNL-----AASFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 82 ~~~~~~-----~~~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
.++... ++...+-+..+||.+|.|+.|-|.+|...+
T Consensus 137 qei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 137 QEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred HHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence 333332 233446688999999999999999998654
No 156
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.04 E-value=9.6e-10 Score=98.64 Aligned_cols=82 Identities=24% Similarity=0.198 Sum_probs=62.5
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV 106 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv 106 (238)
++|++|+|+|. ++.+++.+..|...+.... ..+.|+++|+||+|+.....+ .... ....+++++||++|.|+
T Consensus 268 ~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~-~~~~piIlV~NK~Dl~~~~~v-----~~~~-~~~~~~i~iSAktg~GI 340 (351)
T TIGR03156 268 EADLLLHVVDASDPDREEQIEAVEKVLEELG-AEDIPQLLVYNKIDLLDEPRI-----ERLE-EGYPEAVFVSAKTGEGL 340 (351)
T ss_pred hCCEEEEEEECCCCchHHHHHHHHHHHHHhc-cCCCCEEEEEEeecCCChHhH-----HHHH-hCCCCEEEEEccCCCCH
Confidence 89999999999 8888888877766665543 257899999999999653322 1111 22346899999999999
Q ss_pred HHHHHHHHHH
Q psy14042 107 DELLVGILNQ 116 (238)
Q Consensus 107 ~elf~~i~~~ 116 (238)
++++..|.+.
T Consensus 341 ~eL~~~I~~~ 350 (351)
T TIGR03156 341 DLLLEAIAER 350 (351)
T ss_pred HHHHHHHHhh
Confidence 9999998753
No 157
>PRK04213 GTP-binding protein; Provisional
Probab=99.03 E-value=3.1e-10 Score=93.33 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=44.7
Q ss_pred CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC---------eEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 60 RTRPAIIVANKIDLARARAVSSQDAKNLAASFKV---------KFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 60 ~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~---------~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
.++|+++|+||+|+...+ .+...++++.++. +++++||++| |++++|.+|++.+.+.
T Consensus 129 ~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 129 LGIPPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred cCCCeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 579999999999996543 3345555665554 5899999999 9999999999876543
No 158
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.00 E-value=2.1e-09 Score=85.19 Aligned_cols=102 Identities=18% Similarity=0.153 Sum_probs=67.0
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc-H
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS-S 81 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~-~ 81 (238)
...+.+|| +.|+.++.. .+|++++|+|. +...-+ ....+..+.. .+.|+++|+||+|+....... .
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~-~~~~~~~~~~----~~~p~ivv~NK~Dl~~~~~~~~~ 123 (168)
T cd01887 49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQ-TIEAIKLAKA----ANVPFIVALNKIDKPNANPERVK 123 (168)
T ss_pred cceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHH-HHHHHHHHHH----cCCCEEEEEEceecccccHHHHH
Confidence 56789999 566666554 89999999999 532211 1112223333 568999999999997432111 1
Q ss_pred HHHHHHHH----h--CCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 82 QDAKNLAA----S--FKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 82 ~~~~~~~~----~--~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
.....+.. . ..++++++||++|+|++++|+.|.+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 124 NELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred HHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 11111111 1 236799999999999999999998654
No 159
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.99 E-value=2.3e-09 Score=85.43 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=63.6
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC--eEEEEccCCCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV--KFIEVSVGIHH 104 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~--~~~evSA~t~~ 104 (238)
++|++++|+|. +..++. ..|+.++ . .+.|+++++||+|+.. ...+....++++.++ |++++||++|+
T Consensus 64 ~ad~il~v~d~~~~~s~~--~~~~~~~---~--~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~ 133 (158)
T PRK15467 64 DVDMLIYVHGANDPESRL--PAGLLDI---G--VSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQ 133 (158)
T ss_pred cCCEEEEEEeCCCccccc--CHHHHhc---c--CCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCcc
Confidence 89999999999 666653 3344432 1 4679999999999964 234566677777775 89999999999
Q ss_pred CHHHHHHHHHHHHHh
Q psy14042 105 NVDELLVGILNQIRL 119 (238)
Q Consensus 105 gv~elf~~i~~~l~~ 119 (238)
|++++|..+.+.+..
T Consensus 134 gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 134 SVQQLVDYLASLTKQ 148 (158)
T ss_pred CHHHHHHHHHHhchh
Confidence 999999999877643
No 160
>KOG0076|consensus
Probab=98.98 E-value=5.9e-10 Score=88.79 Aligned_cols=114 Identities=20% Similarity=0.243 Sum_probs=90.8
Q ss_pred EEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042 5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA 76 (238)
Q Consensus 5 i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~ 76 (238)
+.++ ...+.+|| +..|++|.. .++++|+++|. +++.|+....-.+.+.......++|+++.+||.|+.+.
T Consensus 64 i~v~--~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~ 141 (197)
T KOG0076|consen 64 IEVC--NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA 141 (197)
T ss_pred eeec--cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh
Confidence 4444 46788999 788899877 99999999999 99999999988888877665689999999999999865
Q ss_pred ccccHHH-HHHHHH---hCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 77 RAVSSQD-AKNLAA---SFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 77 ~~v~~~~-~~~~~~---~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
.++.+-. ....++ +..++|.++||.+|+||++-..++++.+..+
T Consensus 142 ~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 142 MEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 4433221 111223 2357899999999999999999999888766
No 161
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.98 E-value=5.7e-09 Score=81.45 Aligned_cols=79 Identities=19% Similarity=0.162 Sum_probs=57.2
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC-eEEEEccCCCCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV-KFIEVSVGIHHN 105 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~g 105 (238)
++|++++|+|. +..+.... .+...+++ .+.|+++|+||+|+...... .......+. +++++||+++.|
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~-~~~~~~~~----~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~g 145 (157)
T cd01894 76 EADVILFVVDGREGLTPADE-EIAKYLRK----SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRG 145 (157)
T ss_pred hCCEEEEEEeccccCCccHH-HHHHHHHh----cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCC
Confidence 89999999999 54444432 22233332 45999999999999764332 223344565 789999999999
Q ss_pred HHHHHHHHHHH
Q psy14042 106 VDELLVGILNQ 116 (238)
Q Consensus 106 v~elf~~i~~~ 116 (238)
++++|+.+++.
T Consensus 146 v~~l~~~l~~~ 156 (157)
T cd01894 146 IGDLLDAILEL 156 (157)
T ss_pred HHHHHHHHHhh
Confidence 99999999864
No 162
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.97 E-value=1.5e-09 Score=90.08 Aligned_cols=104 Identities=20% Similarity=0.204 Sum_probs=66.7
Q ss_pred EEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc--cH
Q psy14042 12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV--SS 81 (238)
Q Consensus 12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v--~~ 81 (238)
.++.+|| ++|...... ++|++++|+|. +..........+..+... ...|+++|+||+|+...... ..
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~~~ 159 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALENY 159 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHHHH
Confidence 6789999 455333222 78999999999 532111111122222221 23579999999999753322 12
Q ss_pred HHHHHHHHh---CCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 82 QDAKNLAAS---FKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 82 ~~~~~~~~~---~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
++++.+.+. .+++++++||++|+|++++|..|.+.+.
T Consensus 160 ~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 160 EQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 334444443 2678999999999999999999987654
No 163
>PRK15494 era GTPase Era; Provisional
Probab=98.96 E-value=7e-09 Score=92.72 Aligned_cols=107 Identities=17% Similarity=0.210 Sum_probs=73.7
Q ss_pred EEECCeEEEEEEEe-----CCCccccc---------C-CceEEEEEEECCcchHHHHH-HHHHHHHHhcCCCCCCEEEEE
Q psy14042 5 LQGHSGKVRAIIWN-----EQYEKLTS---------S-DETGLIIVWMLYKPSYHRVE-QDVIRLHEEGYLRTRPAIIVA 68 (238)
Q Consensus 5 i~~~~~~v~l~iWD-----e~~~~l~~---------~-~ad~~IlV~dvd~~s~~~~~-~~~~~l~~~~~~~~~piilVg 68 (238)
+..++ .++.+|| +.+..+.. . ++|++|+|+|. ..+|.... .|+..+.. .+.|.++|+
T Consensus 95 ~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~-~~s~~~~~~~il~~l~~----~~~p~IlVi 167 (339)
T PRK15494 95 ITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDS-LKSFDDITHNILDKLRS----LNIVPIFLL 167 (339)
T ss_pred EEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEEC-CCCCCHHHHHHHHHHHh----cCCCEEEEE
Confidence 34444 4679999 33443332 1 89999999986 23555553 45555554 356888999
Q ss_pred EeccCCCcccccHHHHHHHHHhCC--CeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 69 NKIDLARARAVSSQDAKNLAASFK--VKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 69 NK~DL~~~~~v~~~~~~~~~~~~~--~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
||+|+... ...++.+.+...+ .+++++||++|.|++++|..|.+.+.+.+
T Consensus 168 NKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 168 NKIDIESK---YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISP 219 (339)
T ss_pred EhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCC
Confidence 99999643 2334555555443 57999999999999999999998776543
No 164
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.94 E-value=7.8e-09 Score=89.45 Aligned_cols=86 Identities=15% Similarity=0.036 Sum_probs=63.7
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC-eEEEEccCCCCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV-KFIEVSVGIHHN 105 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~g 105 (238)
++|++++|+|. +..+++ ..++..+.. .+.|+++|+||+|+...... .+....++...+. +++++||++|.|
T Consensus 79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~----~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~g 151 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG--EFVLTKLQN----LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDN 151 (270)
T ss_pred hCCEEEEEEECCCCCchH--HHHHHHHHh----cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCC
Confidence 89999999999 665554 445555544 57899999999999743332 2334444444454 799999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy14042 106 VDELLVGILNQIRLK 120 (238)
Q Consensus 106 v~elf~~i~~~l~~~ 120 (238)
+++++..+.+.+++.
T Consensus 152 i~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 152 TSFLAAFIEVHLPEG 166 (270)
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999877543
No 165
>KOG0072|consensus
Probab=98.94 E-value=2e-09 Score=83.33 Aligned_cols=111 Identities=13% Similarity=0.103 Sum_probs=83.2
Q ss_pred CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc--
Q psy14042 9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA-- 78 (238)
Q Consensus 9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~-- 78 (238)
-++.++++|| -..|.+|+. +.+++|+|.|. |++........+-.+.++.......+++++||.|.+....
T Consensus 59 yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~ 138 (182)
T KOG0072|consen 59 YKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRS 138 (182)
T ss_pred cccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHH
Confidence 3678999999 445566655 99999999999 9888888877777776666557788999999999864322
Q ss_pred -ccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 79 -VSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 79 -v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
+.......-.+..-+..|++||.+|+|+++..+++.+.+.+
T Consensus 139 E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 139 EVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred HHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhc
Confidence 11111222223334789999999999999999999987754
No 166
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.92 E-value=6.9e-09 Score=83.55 Aligned_cols=102 Identities=21% Similarity=0.202 Sum_probs=71.6
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc--c
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV--S 80 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v--~ 80 (238)
...+.+|| ..|+..+.. .+|++++|+|. +..+... ..++..+.. .+.|+++|+||+|+...... .
T Consensus 61 ~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~ 135 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEV 135 (189)
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHH
Confidence 46899999 445444433 89999999999 5444432 334444433 67999999999999753222 2
Q ss_pred HHHHHHHHHh--------------CCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 81 SQDAKNLAAS--------------FKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 81 ~~~~~~~~~~--------------~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
.++..+..+. ...+++++||++|+|++++|..+.+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 136 LREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred HHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 2334444333 357899999999999999999998765
No 167
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.91 E-value=2.4e-08 Score=91.60 Aligned_cols=88 Identities=18% Similarity=0.100 Sum_probs=61.5
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHh----CCCeEEEEccCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAAS----FKVKFIEVSVGI 102 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~----~~~~~~evSA~t 102 (238)
.+|++|+|+|. +..+.++.+ ++..+.+ .+.|+++|+||+|+........+....+... .+++++++||++
T Consensus 254 ~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~ 328 (429)
T TIGR03594 254 RADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALT 328 (429)
T ss_pred hCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCC
Confidence 89999999999 776666543 3344433 5789999999999972211111111122222 247899999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q psy14042 103 HHNVDELLVGILNQIRLK 120 (238)
Q Consensus 103 ~~gv~elf~~i~~~l~~~ 120 (238)
|.|++++|..+.+.....
T Consensus 329 g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 329 GQGVDKLLDAIDEVYENA 346 (429)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999876543
No 168
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.91 E-value=1.3e-08 Score=93.99 Aligned_cols=102 Identities=16% Similarity=0.126 Sum_probs=75.4
Q ss_pred EEEECCeEEEEEEEe----CCCccc----------ccC-CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEE
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKL----------TSS-DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIV 67 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l----------~~~-~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilV 67 (238)
.+.+++. .+.+|| .++... ... ++|++++|||. ++.+++.. |+..+.. .+.|+++|
T Consensus 245 ~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV 316 (442)
T TIGR00450 245 DFELNGI--LIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILV 316 (442)
T ss_pred EEEECCE--EEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEE
Confidence 4566664 468999 222211 111 89999999999 88888765 7666643 56899999
Q ss_pred EEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 68 ANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 68 gNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
+||+|+... +...+++..+.+++++||++ .||+++|..+.+.+.+.
T Consensus 317 ~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 317 LNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred EECccCCCc------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 999999643 22345667788999999998 69999999999888654
No 169
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.90 E-value=1.3e-08 Score=97.16 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=75.0
Q ss_pred EEECCeEEEEEEEe----CCCcccc------c-----CCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEE
Q psy14042 5 LQGHSGKVRAIIWN----EQYEKLT------S-----SDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVA 68 (238)
Q Consensus 5 i~~~~~~v~l~iWD----e~~~~l~------~-----~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVg 68 (238)
++.++ .++++|| +++.... . .++|++++|+|. +. +....+..++.+ .+.|+++|+
T Consensus 36 i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l---er~l~l~~ql~~----~~~PiIIVl 106 (591)
T TIGR00437 36 LGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL---ERNLYLTLQLLE----LGIPMILAL 106 (591)
T ss_pred EEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc---hhhHHHHHHHHh----cCCCEEEEE
Confidence 34444 3578999 5554431 1 178999999988 42 222333444433 579999999
Q ss_pred EeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 69 NKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 69 NK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
||+|+.+++.+.. +.+.+++..+++++++||++|.|++++|+.+.+..
T Consensus 107 NK~Dl~~~~~i~~-d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 107 NLVDEAEKKGIRI-DEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred ehhHHHHhCCChh-hHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 9999976555543 56788888999999999999999999999998764
No 170
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.87 E-value=1.2e-08 Score=94.41 Aligned_cols=99 Identities=16% Similarity=0.120 Sum_probs=72.7
Q ss_pred EEEECCeEEEEEEEe----CCCccc---------c-cC-CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEE
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKL---------T-SS-DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIV 67 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l---------~-~~-~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilV 67 (238)
.+.+++ +.+.+|| +.+... . .. ++|++++|+|. ++.+++....|.. ..+.|+++|
T Consensus 257 ~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV 327 (449)
T PRK05291 257 HINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVV 327 (449)
T ss_pred EEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEE
Confidence 455665 4678999 333221 1 11 89999999999 7778776554433 267899999
Q ss_pred EEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 68 ANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 68 gNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
+||+|+....... ...+.+++++||++|.|+++++..|.+.+..
T Consensus 328 ~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 328 LNKADLTGEIDLE--------EENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred EEhhhccccchhh--------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 9999997543321 3446789999999999999999999988754
No 171
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.87 E-value=2e-08 Score=95.71 Aligned_cols=96 Identities=20% Similarity=0.227 Sum_probs=65.3
Q ss_pred EEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHH
Q psy14042 13 RAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAK 85 (238)
Q Consensus 13 ~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~ 85 (238)
.+.+|| +.|..++.. .+|++|+|+|.+..........+..+.. .++|+++++||+|+... ..++..
T Consensus 136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~----~~vPiIVviNKiDl~~~---~~e~v~ 208 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKA----ANVPIIVAINKIDKPEA---NPDRVK 208 (587)
T ss_pred EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHH----cCCCEEEEEECcccccC---CHHHHH
Confidence 788999 788777654 8899999999942222211112222222 57999999999999642 222333
Q ss_pred HHHHh-------CC--CeEEEEccCCCCCHHHHHHHHHH
Q psy14042 86 NLAAS-------FK--VKFIEVSVGIHHNVDELLVGILN 115 (238)
Q Consensus 86 ~~~~~-------~~--~~~~evSA~t~~gv~elf~~i~~ 115 (238)
..+.. ++ .+++++||++|.|++++|..+..
T Consensus 209 ~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 209 QELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred HHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 32222 22 57999999999999999999874
No 172
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.86 E-value=1.4e-08 Score=96.73 Aligned_cols=101 Identities=16% Similarity=0.150 Sum_probs=72.7
Q ss_pred EEEEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCcccc
Q psy14042 12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARAV 79 (238)
Q Consensus 12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~v 79 (238)
+.+.+|| ++|...... ++|++++|+|. + +++++.+ ..+.. .++| +++|+||+|+.+...+
T Consensus 50 ~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl----~il~~----lgi~~iIVVlNK~Dlv~~~~~ 121 (581)
T TIGR00475 50 YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHL----AVLDL----LGIPHTIVVITKADRVNEEEI 121 (581)
T ss_pred EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHH----HHHHH----cCCCeEEEEEECCCCCCHHHH
Confidence 7889999 667544333 99999999999 4 3444433 22322 4577 9999999999765433
Q ss_pred --cHHHHHHHHHhC----CCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 80 --SSQDAKNLAASF----KVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 80 --~~~~~~~~~~~~----~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
..+++..+.+.. +++++++||++|.|+++++..|.+.+...
T Consensus 122 ~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 122 KRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESL 168 (581)
T ss_pred HHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhC
Confidence 234556665554 57899999999999999999988776543
No 173
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.86 E-value=1.3e-08 Score=83.34 Aligned_cols=105 Identities=19% Similarity=0.072 Sum_probs=68.2
Q ss_pred CeEEEEEEEe-CCCcccccC------CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc--
Q psy14042 9 SGKVRAIIWN-EQYEKLTSS------DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA-- 78 (238)
Q Consensus 9 ~~~v~l~iWD-e~~~~l~~~------~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~-- 78 (238)
+..+.+.+|| ..+..+... .+|++++|+|. +.........+. +... .+.|+++|+||+|+.....
T Consensus 65 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~ 139 (192)
T cd01889 65 EENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERE 139 (192)
T ss_pred ccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHH
Confidence 3468899999 333332222 68999999999 544444333332 1111 3579999999999964322
Q ss_pred ccHHHHHHH-HH------hCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 79 VSSQDAKNL-AA------SFKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 79 v~~~~~~~~-~~------~~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
...++..+. .. ..+++++++||++|.|+++++..|..++.
T Consensus 140 ~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 140 RKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 122222221 11 23678999999999999999999997764
No 174
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.86 E-value=1.5e-08 Score=96.89 Aligned_cols=105 Identities=18% Similarity=0.173 Sum_probs=75.6
Q ss_pred CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc
Q psy14042 8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV 79 (238)
Q Consensus 8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v 79 (238)
++..+.+++|| +.|...+.. .+|++|+|+|. +....+....|.... . .+.|+++|+||+|+....
T Consensus 70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~----~~lpiIvViNKiDl~~a~-- 142 (600)
T PRK05433 70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NDLEIIPVLNKIDLPAAD-- 142 (600)
T ss_pred CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEEECCCCCccc--
Confidence 56679999999 566554433 89999999999 655555555554322 1 568999999999996432
Q ss_pred cHHHHHHHHHhCCCe---EEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 80 SSQDAKNLAASFKVK---FIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 80 ~~~~~~~~~~~~~~~---~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
......++.+..+++ ++++||++|.|++++++.|++.++.
T Consensus 143 ~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 143 PERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred HHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 122233444445553 8999999999999999999987753
No 175
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.85 E-value=1.3e-08 Score=94.93 Aligned_cols=83 Identities=20% Similarity=0.193 Sum_probs=59.5
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV 106 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv 106 (238)
++|++|+|+|. +..++.. ..|...++. .+.|+++|+||+|+.... .+....+....+ ..+++||++|.|+
T Consensus 117 ~aD~il~VvD~~~~~s~~~-~~i~~~l~~----~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~gi 187 (472)
T PRK03003 117 TADAVLFVVDATVGATATD-EAVARVLRR----SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGRGV 187 (472)
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCCCc
Confidence 89999999999 7666543 345555543 579999999999996421 111111222223 3578999999999
Q ss_pred HHHHHHHHHHHHh
Q psy14042 107 DELLVGILNQIRL 119 (238)
Q Consensus 107 ~elf~~i~~~l~~ 119 (238)
+++|..|++.+.+
T Consensus 188 ~eL~~~i~~~l~~ 200 (472)
T PRK03003 188 GDLLDAVLAALPE 200 (472)
T ss_pred HHHHHHHHhhccc
Confidence 9999999988855
No 176
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.82 E-value=1.6e-08 Score=78.74 Aligned_cols=76 Identities=21% Similarity=0.193 Sum_probs=60.4
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV 106 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv 106 (238)
++|++++|+|+ ++.+....+.+.. ....|+++|+||+|+...... .....+.+++++||+++.|+
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v 145 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGL 145 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCH
Confidence 89999999999 7777776654433 267999999999999764433 33445678999999999999
Q ss_pred HHHHHHHHHHH
Q psy14042 107 DELLVGILNQI 117 (238)
Q Consensus 107 ~elf~~i~~~l 117 (238)
++++..|.+.+
T Consensus 146 ~~l~~~l~~~~ 156 (157)
T cd04164 146 DELKEALLELA 156 (157)
T ss_pred HHHHHHHHHhh
Confidence 99999988653
No 177
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.80 E-value=6.3e-08 Score=76.46 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=59.0
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHH-HHHHHHhC----CCeEEEEccC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQD-AKNLAASF----KVKFIEVSVG 101 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~-~~~~~~~~----~~~~~evSA~ 101 (238)
++|++++|+|. ++.+.... .+...+.. .+.|+++++||+|+...+....++ ...+.+.. ..+++++||+
T Consensus 84 ~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (174)
T cd01895 84 RADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISAL 158 (174)
T ss_pred hcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEecc
Confidence 89999999999 76666543 23333332 568999999999997654222222 22233333 3689999999
Q ss_pred CCCCHHHHHHHHHH
Q psy14042 102 IHHNVDELLVGILN 115 (238)
Q Consensus 102 t~~gv~elf~~i~~ 115 (238)
++.|+++++..+.+
T Consensus 159 ~~~~i~~~~~~l~~ 172 (174)
T cd01895 159 TGQGVDKLFDAIDE 172 (174)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999999875
No 178
>PRK11058 GTPase HflX; Provisional
Probab=98.80 E-value=3.3e-08 Score=90.88 Aligned_cols=87 Identities=16% Similarity=0.077 Sum_probs=63.6
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCe-EEEEccCCCCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVK-FIEVSVGIHHN 105 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~-~~evSA~t~~g 105 (238)
++|++|+|+|. ++.+++.+..|...+.... ..+.|+++|+||+|+...... ... ....+.+ ++++||++|.|
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~-~~~~pvIiV~NKiDL~~~~~~---~~~--~~~~~~~~~v~ISAktG~G 349 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEID-AHEIPTLLVMNKIDMLDDFEP---RID--RDEENKPIRVWLSAQTGAG 349 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhc-cCCCCEEEEEEcccCCCchhH---HHH--HHhcCCCceEEEeCCCCCC
Confidence 89999999999 8888888765555544432 257999999999999643110 111 1123555 58899999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy14042 106 VDELLVGILNQIRLK 120 (238)
Q Consensus 106 v~elf~~i~~~l~~~ 120 (238)
++++++.|.+.+...
T Consensus 350 IdeL~e~I~~~l~~~ 364 (426)
T PRK11058 350 IPLLFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999887543
No 179
>PRK12288 GTPase RsgA; Reviewed
Probab=98.78 E-value=4.7e-08 Score=87.59 Aligned_cols=84 Identities=17% Similarity=0.202 Sum_probs=66.3
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc-cHHHHHHHHHhCCCeEEEEccCCCCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV-SSQDAKNLAASFKVKFIEVSVGIHHN 105 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v-~~~~~~~~~~~~~~~~~evSA~t~~g 105 (238)
++|.+++|+++ +..+|..+..|+..+.. .++|.+||+||+||....+. ...+.....+..+++++++||++++|
T Consensus 120 NvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G 195 (347)
T PRK12288 120 NIDQIVIVSAVLPELSLNIIDRYLVACET----LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG 195 (347)
T ss_pred EccEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence 69999999999 88899999999876543 67999999999999654321 11222333456789999999999999
Q ss_pred HHHHHHHHHH
Q psy14042 106 VDELLVGILN 115 (238)
Q Consensus 106 v~elf~~i~~ 115 (238)
+++++..|..
T Consensus 196 ideL~~~L~~ 205 (347)
T PRK12288 196 LEELEAALTG 205 (347)
T ss_pred HHHHHHHHhh
Confidence 9999998864
No 180
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.77 E-value=5.7e-08 Score=74.89 Aligned_cols=101 Identities=19% Similarity=0.177 Sum_probs=69.3
Q ss_pred EEEEEEEe----CCCccccc--------C--CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 11 KVRAIIWN----EQYEKLTS--------S--DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~--------~--~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
...+.+|| ..+..... . ++|++++|+|. +..+..... +...... .+.|+++|+||+|+..
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLP 118 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCC
Confidence 45789999 22222221 1 89999999999 665555544 4444433 6899999999999976
Q ss_pred cccccHHH---HHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 76 ARAVSSQD---AKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 76 ~~~v~~~~---~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
........ ........+.+++++||+++.|+++++..+.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 119 EEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred hhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 54333221 122233346889999999999999999999864
No 181
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.77 E-value=2.1e-08 Score=75.30 Aligned_cols=67 Identities=19% Similarity=0.327 Sum_probs=49.3
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHH---HHHHHHhcCCCCCCEEEEEEecc
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQD---VIRLHEEGYLRTRPAIIVANKID 72 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~---~~~l~~~~~~~~~piilVgNK~D 72 (238)
.+.+......+.+|| +.+...... ++|++|+|||+ ++.||+.+..+ +..+.... .++|++|||||.|
T Consensus 42 ~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~--~~~piilv~nK~D 119 (119)
T PF08477_consen 42 VIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRD--KNIPIILVGNKSD 119 (119)
T ss_dssp EEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHS--SCSEEEEEEE-TC
T ss_pred EEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccC--CCCCEEEEEeccC
Confidence 445666677799999 334443322 99999999999 99999998554 55555443 6699999999998
No 182
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.77 E-value=4.8e-08 Score=85.41 Aligned_cols=81 Identities=19% Similarity=0.126 Sum_probs=64.7
Q ss_pred CceEEEEEEEC-Ccc-hHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCC
Q psy14042 28 DETGLIIVWML-YKP-SYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHN 105 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~-s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~g 105 (238)
++|.+++|+|+ ++. ++..+..|+..+.. .++|+++|+||+||..... ...........+.+++.+||+++.|
T Consensus 78 nvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~g~g 151 (287)
T cd01854 78 NVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKTGEG 151 (287)
T ss_pred eCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCCCcc
Confidence 89999999999 666 88888889887765 5799999999999965421 1122333455789999999999999
Q ss_pred HHHHHHHHH
Q psy14042 106 VDELLVGIL 114 (238)
Q Consensus 106 v~elf~~i~ 114 (238)
+++++..|.
T Consensus 152 i~~L~~~L~ 160 (287)
T cd01854 152 LDELREYLK 160 (287)
T ss_pred HHHHHhhhc
Confidence 999988776
No 183
>PRK00098 GTPase RsgA; Reviewed
Probab=98.76 E-value=3.8e-08 Score=86.47 Aligned_cols=82 Identities=18% Similarity=0.167 Sum_probs=63.1
Q ss_pred CceEEEEEEEC-CcchHHH-HHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCC
Q psy14042 28 DETGLIIVWML-YKPSYHR-VEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHN 105 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~-~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~g 105 (238)
++|.+++|+|+ +++++.. +..|+..+.. .++|+++|+||+||...... ..+.....+..+++++++||+++.|
T Consensus 80 niD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~~~-~~~~~~~~~~~g~~v~~vSA~~g~g 154 (298)
T PRK00098 80 NVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDLEE-ARELLALYRAIGYDVLELSAKEGEG 154 (298)
T ss_pred cCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCHHH-HHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 89999999999 7766544 4778777654 67999999999999633221 2233444566789999999999999
Q ss_pred HHHHHHHHH
Q psy14042 106 VDELLVGIL 114 (238)
Q Consensus 106 v~elf~~i~ 114 (238)
+++++..+.
T Consensus 155 i~~L~~~l~ 163 (298)
T PRK00098 155 LDELKPLLA 163 (298)
T ss_pred HHHHHhhcc
Confidence 999998774
No 184
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.76 E-value=5.7e-08 Score=88.36 Aligned_cols=92 Identities=17% Similarity=0.137 Sum_probs=73.1
Q ss_pred CceEEEEEEECC----cchHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccCCCcccccHHHHHHHHHhCC--CeEEEEcc
Q psy14042 28 DETGLIIVWMLY----KPSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDLARARAVSSQDAKNLAASFK--VKFIEVSV 100 (238)
Q Consensus 28 ~ad~~IlV~dvd----~~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~--~~~~evSA 100 (238)
+++++++|+|+. .++++.+..|+.++..+... .+.|++||+||+|+.....+ .+...++.+..+ .+++.+||
T Consensus 237 radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA 315 (390)
T PRK12298 237 RCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISA 315 (390)
T ss_pred hCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEEC
Confidence 899999999983 56888889999999887532 57899999999999754433 234445555544 47899999
Q ss_pred CCCCCHHHHHHHHHHHHHhh
Q psy14042 101 GIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 101 ~t~~gv~elf~~i~~~l~~~ 120 (238)
+++.|+++++..|.+.+.+.
T Consensus 316 ~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 316 ASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCCcCHHHHHHHHHHHhhhC
Confidence 99999999999999988664
No 185
>PRK12289 GTPase RsgA; Reviewed
Probab=98.76 E-value=5.9e-08 Score=87.02 Aligned_cols=82 Identities=16% Similarity=0.237 Sum_probs=62.6
Q ss_pred CceEEEEEEEC-Ccc-hHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCC
Q psy14042 28 DETGLIIVWML-YKP-SYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHN 105 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~-s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~g 105 (238)
++|.+++|+|+ ++. ++..+..|+..+.. .++|++||+||+||....+. +.........|++++.+||+++.|
T Consensus 89 NvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~iSA~tg~G 162 (352)
T PRK12289 89 NADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFISVETGIG 162 (352)
T ss_pred cCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEEEcCCCCC
Confidence 99999999999 654 45566777776633 67999999999999643221 122233356789999999999999
Q ss_pred HHHHHHHHHH
Q psy14042 106 VDELLVGILN 115 (238)
Q Consensus 106 v~elf~~i~~ 115 (238)
+++++..+..
T Consensus 163 I~eL~~~L~~ 172 (352)
T PRK12289 163 LEALLEQLRN 172 (352)
T ss_pred HHHHhhhhcc
Confidence 9999998864
No 186
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.73 E-value=2.3e-08 Score=81.81 Aligned_cols=98 Identities=28% Similarity=0.264 Sum_probs=63.3
Q ss_pred EEEEEeCC-CcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHH
Q psy14042 13 RAIIWNEQ-YEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNL 87 (238)
Q Consensus 13 ~l~iWDe~-~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~ 87 (238)
..++++.. |+.+... ++|++++|+|+ +... .|..++.... .+.|+++|+||+|+..... ..+....+
T Consensus 15 ~~~~~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~--~~~~~ilV~NK~Dl~~~~~-~~~~~~~~ 86 (190)
T cd01855 15 PVEIPDEDFILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG--GNNPVILVGNKIDLLPKDK-NLVRIKNW 86 (190)
T ss_pred cccCChHHHHHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc--CCCcEEEEEEchhcCCCCC-CHHHHHHH
Confidence 33444422 3554444 89999999999 5431 1223332222 5689999999999964332 22233333
Q ss_pred H-----HhCCC---eEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 88 A-----ASFKV---KFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 88 ~-----~~~~~---~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
. +..+. +++.+||++++|+++++..|.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 87 LRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 2 23333 5899999999999999999998774
No 187
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.72 E-value=6e-08 Score=94.19 Aligned_cols=98 Identities=21% Similarity=0.310 Sum_probs=69.6
Q ss_pred CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc
Q psy14042 9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR 77 (238)
Q Consensus 9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~ 77 (238)
+..+.+.+|| +.|..++.. .+|++|+|+|. + +.+++.+. .+.. .++|+|+|+||+|+....
T Consensus 292 ~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~----~~k~----~~iPiIVViNKiDl~~~~ 363 (742)
T CHL00189 292 DENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAIN----YIQA----ANVPIIVAINKIDKANAN 363 (742)
T ss_pred CCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHH----HHHh----cCceEEEEEECCCccccC
Confidence 4458899999 678777654 89999999999 5 34444332 2222 578999999999997532
Q ss_pred cccHHHHHH-H------HHhCC--CeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 78 AVSSQDAKN-L------AASFK--VKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 78 ~v~~~~~~~-~------~~~~~--~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
.++... + ...++ ++++++||++|.|++++|..|....
T Consensus 364 ---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 364 ---TERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred ---HHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 111111 1 22333 6899999999999999999988653
No 188
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.72 E-value=3.1e-07 Score=87.72 Aligned_cols=109 Identities=15% Similarity=0.116 Sum_probs=77.7
Q ss_pred ECCeEEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc
Q psy14042 7 GHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV 79 (238)
Q Consensus 7 ~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v 79 (238)
++...+++.||| +.|...... .+|++++|+|.........+.|+..+.. .++|+++|+||+|+...+..
T Consensus 59 v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~ 134 (594)
T TIGR01394 59 IRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPD 134 (594)
T ss_pred EEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHH
Confidence 333458899999 566543332 8999999999954566666777777765 56899999999999754321
Q ss_pred -cHHHHHHHH-------HhCCCeEEEEccCCCC----------CHHHHHHHHHHHHHh
Q psy14042 80 -SSQDAKNLA-------ASFKVKFIEVSVGIHH----------NVDELLVGILNQIRL 119 (238)
Q Consensus 80 -~~~~~~~~~-------~~~~~~~~evSA~t~~----------gv~elf~~i~~~l~~ 119 (238)
..++...+. ++..++++.+||++|+ |++.+|+.|++.++.
T Consensus 135 ~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 135 EVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred HHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 122333333 2245789999999996 799999999977643
No 189
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.72 E-value=1.2e-07 Score=92.82 Aligned_cols=97 Identities=21% Similarity=0.259 Sum_probs=67.0
Q ss_pred EEEEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc--c
Q psy14042 12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR--A 78 (238)
Q Consensus 12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~--~ 78 (238)
..+.||| +.|..++.. .+|++|||+|. + +++++.+ ..+. ..++|+|+++||+|+.... .
T Consensus 337 ~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i----~~a~----~~~vPiIVviNKiDl~~a~~e~ 408 (787)
T PRK05306 337 GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAI----NHAK----AAGVPIIVAINKIDKPGANPDR 408 (787)
T ss_pred EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHH----HHHH----hcCCcEEEEEECccccccCHHH
Confidence 5688999 788877765 78999999999 5 3333332 1222 2679999999999996421 1
Q ss_pred ccHH--HHHHHHHhCC--CeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 79 VSSQ--DAKNLAASFK--VKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 79 v~~~--~~~~~~~~~~--~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
+..+ +...+++.++ ++++++||++|.|++++|..|...
T Consensus 409 V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 409 VKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred HHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 1111 0111233343 789999999999999999998753
No 190
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.70 E-value=1.7e-07 Score=86.24 Aligned_cols=102 Identities=18% Similarity=0.080 Sum_probs=65.3
Q ss_pred ECCeEEEEEEEe----CCCccccc-C--CceEEEEEEEC-CcchHHHHHHHHH--HHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042 7 GHSGKVRAIIWN----EQYEKLTS-S--DETGLIIVWML-YKPSYHRVEQDVI--RLHEEGYLRTRPAIIVANKIDLARA 76 (238)
Q Consensus 7 ~~~~~v~l~iWD----e~~~~l~~-~--~ad~~IlV~dv-d~~s~~~~~~~~~--~l~~~~~~~~~piilVgNK~DL~~~ 76 (238)
++...+.+.||| ++|..... . ++|++|+|+|. +.+++ ....+.. .+.+.. ...|+++|+||+|+...
T Consensus 80 ~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~-~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~ 156 (426)
T TIGR00483 80 FETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE-VQPQTREHAFLARTL--GINQLIVAINKMDSVNY 156 (426)
T ss_pred EccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc-cCCchHHHHHHHHHc--CCCeEEEEEEChhccCc
Confidence 334457899999 55543222 2 89999999999 55433 2222222 122222 34579999999999642
Q ss_pred cc----ccHHHHHHHHHhCC-----CeEEEEccCCCCCHHHHHH
Q psy14042 77 RA----VSSQDAKNLAASFK-----VKFIEVSVGIHHNVDELLV 111 (238)
Q Consensus 77 ~~----v~~~~~~~~~~~~~-----~~~~evSA~t~~gv~elf~ 111 (238)
.. ....++..+++..+ ++++++||++|.|+++++.
T Consensus 157 ~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 157 DEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 11 12345666676655 5799999999999987553
No 191
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.69 E-value=8.4e-08 Score=74.94 Aligned_cols=84 Identities=25% Similarity=0.167 Sum_probs=59.8
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhC-CCeEEEEccCCCCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF-KVKFIEVSVGIHHN 105 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~-~~~~~evSA~t~~g 105 (238)
++|++++|+|. +..+ +....+...+.. .+.|+++|+||+|+........+....+.... ..+++++|++++.|
T Consensus 82 ~~d~i~~v~d~~~~~~-~~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 82 DVDLVLFVVDASEPIG-EGDEFILELLKK----SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN 156 (168)
T ss_pred hCCEEEEEEECCCccC-chHHHHHHHHHH----hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence 89999999999 5411 112233344433 36899999999999754433344455555555 36899999999999
Q ss_pred HHHHHHHHHHH
Q psy14042 106 VDELLVGILNQ 116 (238)
Q Consensus 106 v~elf~~i~~~ 116 (238)
+++++..|.+.
T Consensus 157 ~~~l~~~l~~~ 167 (168)
T cd04163 157 VDELLEEIVKY 167 (168)
T ss_pred hHHHHHHHHhh
Confidence 99999999754
No 192
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.68 E-value=4.6e-08 Score=77.41 Aligned_cols=84 Identities=15% Similarity=0.042 Sum_probs=57.9
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV 106 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv 106 (238)
++|++|+|+|. ++..... ..+...+. ..+.|+++|+||+|+...... .....+.+..+.+++.+||+++.|+
T Consensus 12 ~aD~vl~V~D~~~~~~~~~-~~l~~~~~----~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSa~~~~gi 84 (156)
T cd01859 12 ESDVVLEVLDARDPELTRS-RKLERYVL----ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYVSAKERLGT 84 (156)
T ss_pred hCCEEEEEeeCCCCcccCC-HHHHHHHH----hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEEEccccccH
Confidence 69999999999 5433222 12222222 156899999999999643221 1111333446778999999999999
Q ss_pred HHHHHHHHHHHH
Q psy14042 107 DELLVGILNQIR 118 (238)
Q Consensus 107 ~elf~~i~~~l~ 118 (238)
++++..+.+.+.
T Consensus 85 ~~L~~~l~~~~~ 96 (156)
T cd01859 85 KILRRTIKELAK 96 (156)
T ss_pred HHHHHHHHHHHh
Confidence 999999988775
No 193
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.68 E-value=7.9e-08 Score=78.53 Aligned_cols=106 Identities=21% Similarity=0.246 Sum_probs=69.6
Q ss_pred CeEEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc--cc
Q psy14042 9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR--AV 79 (238)
Q Consensus 9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~--~v 79 (238)
.....+.+.| ..|...... .+|++|+|.|.....-......+..+.. .+.|+++|.||+|+...+ .+
T Consensus 67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~----~~~p~ivvlNK~D~~~~~~~~~ 142 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRE----LGIPIIVVLNKMDLIEKELEEI 142 (188)
T ss_dssp ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHH----TT-SEEEEEETCTSSHHHHHHH
T ss_pred ccccceeecccccccceeecccceecccccceeeeecccccccccccccccccc----cccceEEeeeeccchhhhHHHH
Confidence 3447789999 334332222 8999999999943333334445555554 678999999999997221 11
Q ss_pred cHHHHHHHHHhC------CCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 80 SSQDAKNLAASF------KVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 80 ~~~~~~~~~~~~------~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
..+....+.+.. .++++.+||++|+|++++++.|.+.++
T Consensus 143 ~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 143 IEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 111222443333 357999999999999999999997764
No 194
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.64 E-value=9e-07 Score=84.42 Aligned_cols=98 Identities=18% Similarity=0.192 Sum_probs=66.7
Q ss_pred EEEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc--
Q psy14042 13 RAIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV-- 79 (238)
Q Consensus 13 ~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v-- 79 (238)
.+.+|| +.|+.++.. .+|++++|+|. + +.+++.+.. +.. .+.|+++++||+|+......
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~----~~vpiIVv~NK~Dl~~~~~~~~ 141 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM----YKTPFVVAANKIDRIPGWRSHE 141 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH----cCCCEEEEEECCCccchhhhcc
Confidence 388999 788877665 89999999999 5 455554432 222 47899999999999632100
Q ss_pred ----------cHH------------HHHHHHH------------hC--CCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 80 ----------SSQ------------DAKNLAA------------SF--KVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 80 ----------~~~------------~~~~~~~------------~~--~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
..+ ....+++ .+ .++++++||++|+|+++++..|.....
T Consensus 142 ~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 142 GRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred CchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 000 0011121 12 368999999999999999998875543
No 195
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.59 E-value=9e-08 Score=86.27 Aligned_cols=91 Identities=24% Similarity=0.258 Sum_probs=66.3
Q ss_pred eCCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHH----HHHHH
Q psy14042 18 NEQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDA----KNLAA 89 (238)
Q Consensus 18 De~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~----~~~~~ 89 (238)
|++|+.+... +++++++|+|+ |.. ..|..++.++. .+.|+++|+||+||.... +..+.. +++++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~--~~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV--GGNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh--CCCCEEEEEEchhhCCCC-CCHHHHHHHHHHHHH
Confidence 4677776655 88899999998 533 33566666554 478999999999996432 223333 34466
Q ss_pred hCCC---eEEEEccCCCCCHHHHHHHHHHH
Q psy14042 90 SFKV---KFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 90 ~~~~---~~~evSA~t~~gv~elf~~i~~~ 116 (238)
+.++ .++++||++++|++++|..+.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 6776 48999999999999999998654
No 196
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.57 E-value=3.5e-07 Score=89.30 Aligned_cols=86 Identities=13% Similarity=0.068 Sum_probs=62.1
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHH-Hh----CCCeEEEEccC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLA-AS----FKVKFIEVSVG 101 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~-~~----~~~~~~evSA~ 101 (238)
++|++++|+|. +..++++.. +...+.. .+.|++||+||+||..... .+..+... .. ...+.+.+||+
T Consensus 532 ~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~iSAk 604 (712)
T PRK09518 532 RSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVNLSAK 604 (712)
T ss_pred cCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEEEECC
Confidence 79999999999 777887765 3344433 5799999999999965322 11121111 11 13467999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q psy14042 102 IHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 102 t~~gv~elf~~i~~~l~~~ 120 (238)
+|.|++++|..+.+.+...
T Consensus 605 tg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 605 TGWHTNRLAPAMQEALESW 623 (712)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999887653
No 197
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.57 E-value=2.1e-07 Score=85.25 Aligned_cols=104 Identities=23% Similarity=0.196 Sum_probs=67.0
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEEC-Ccc-hHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc--
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKP-SYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV-- 79 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~-s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v-- 79 (238)
..++.+|| ++|...... .+|++++|+|. +.. .-+.... +..+.. . ...|+++|+||+|+......
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l~~l~~-~--~i~~iiVVlNK~Dl~~~~~~~~ 159 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-LMALDI-I--GIKNIVIVQNKIDLVSKERALE 159 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-HHHHHH-c--CCCcEEEEEEeeccccchhHHH
Confidence 36889999 555432222 67999999999 432 1222222 222222 1 23479999999999754332
Q ss_pred cHHHHHHHHHhC---CCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 80 SSQDAKNLAASF---KVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 80 ~~~~~~~~~~~~---~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
..+++..+++.. +.+++++||++|.|++++++.|...+.
T Consensus 160 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 160 NYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 123444444432 578999999999999999999987653
No 198
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.56 E-value=3.7e-07 Score=84.05 Aligned_cols=101 Identities=18% Similarity=0.156 Sum_probs=65.6
Q ss_pred EEEECCeEEEEEEEe----CCC--------cccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEE
Q psy14042 4 SLQGHSGKVRAIIWN----EQY--------EKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIV 67 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~--------~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilV 67 (238)
.+.+++ +.+.+|| +.. +..... ++|++|+|+|. +..+..+. .....+++ .+.|+++|
T Consensus 43 ~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~-~~~~~l~~----~~~piilv 115 (435)
T PRK00093 43 EAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADE-EIAKILRK----SNKPVILV 115 (435)
T ss_pred EEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHH----cCCcEEEE
Confidence 345555 7789999 331 111111 89999999999 54333221 11222322 37899999
Q ss_pred EEeccCCCcccccHHHHHHHHHhCCCe-EEEEccCCCCCHHHHHHHHHHH
Q psy14042 68 ANKIDLARARAVSSQDAKNLAASFKVK-FIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 68 gNK~DL~~~~~v~~~~~~~~~~~~~~~-~~evSA~t~~gv~elf~~i~~~ 116 (238)
+||+|+.... +....+ ...++. ++++||++|.|++++|+.++..
T Consensus 116 ~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~~ 160 (435)
T PRK00093 116 VNKVDGPDEE----ADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILEE 160 (435)
T ss_pred EECccCccch----hhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHhh
Confidence 9999975421 122222 345664 8999999999999999999873
No 199
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.56 E-value=1.4e-06 Score=80.19 Aligned_cols=100 Identities=16% Similarity=0.128 Sum_probs=63.5
Q ss_pred CeEEEEEEEe----CCCcc-cccC--CceEEEEEEEC-CcchHHH-HHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc-
Q psy14042 9 SGKVRAIIWN----EQYEK-LTSS--DETGLIIVWML-YKPSYHR-VEQDVIRLHEEGYLRTRPAIIVANKIDLARARA- 78 (238)
Q Consensus 9 ~~~v~l~iWD----e~~~~-l~~~--~ad~~IlV~dv-d~~s~~~-~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~- 78 (238)
...+++.+|| ++|.. +... ++|++|+|+|. ++..+.. ...++..+.. . ...|+++|+||+|+.....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~--~~~~iivviNK~Dl~~~~~~ 157 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-L--GINQLIVAINKMDAVNYDEK 157 (425)
T ss_pred cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-c--CCCeEEEEEEccccccccHH
Confidence 3457899999 55643 3332 89999999999 5322221 2222222222 1 2346999999999975211
Q ss_pred ---ccHHHHHHHHHhCC-----CeEEEEccCCCCCHHHHHH
Q psy14042 79 ---VSSQDAKNLAASFK-----VKFIEVSVGIHHNVDELLV 111 (238)
Q Consensus 79 ---v~~~~~~~~~~~~~-----~~~~evSA~t~~gv~elf~ 111 (238)
...+++..+.+..+ ++++++||++|.|+++++.
T Consensus 158 ~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 158 RYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 12345556665555 5799999999999998553
No 200
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.55 E-value=4.6e-07 Score=73.80 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=57.2
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc--cHHHHHHHHHhCCCeEEEEccCCCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV--SSQDAKNLAASFKVKFIEVSVGIHH 104 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~~~~~~~~~~evSA~t~~ 104 (238)
..+++++|+|. ++.+.... .+...+.. .+.|+++++||+|+....+. ..+++.........+++++||+++.
T Consensus 106 ~~~~~~~v~d~~~~~~~~~~-~i~~~l~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~ 180 (196)
T PRK00454 106 NLKGVVLLIDSRHPLKELDL-QMIEWLKE----YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQ 180 (196)
T ss_pred cceEEEEEEecCCCCCHHHH-HHHHHHHH----cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCC
Confidence 44678888887 54333321 12222222 56899999999999754332 2233444444446789999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy14042 105 NVDELLVGILNQIR 118 (238)
Q Consensus 105 gv~elf~~i~~~l~ 118 (238)
|+++++..|.+.+.
T Consensus 181 gi~~l~~~i~~~~~ 194 (196)
T PRK00454 181 GIDELRAAIAKWLA 194 (196)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999987653
No 201
>PRK00089 era GTPase Era; Reviewed
Probab=98.53 E-value=4.7e-07 Score=79.05 Aligned_cols=88 Identities=24% Similarity=0.202 Sum_probs=62.6
Q ss_pred CceEEEEEEECCcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCC-CeEEEEccCCCCC
Q psy14042 28 DETGLIIVWMLYKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFK-VKFIEVSVGIHHN 105 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~-~~~~evSA~t~~g 105 (238)
++|++++|+|.+. .+... ......+.. .+.|+++|+||+|+.............+.+..+ .+++++||+++.|
T Consensus 84 ~~D~il~vvd~~~-~~~~~~~~i~~~l~~----~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 84 DVDLVLFVVDADE-KIGPGDEFILEKLKK----VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred cCCEEEEEEeCCC-CCChhHHHHHHHHhh----cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 8999999999932 22222 233333332 468999999999997443333445555555554 5799999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy14042 106 VDELLVGILNQIRLK 120 (238)
Q Consensus 106 v~elf~~i~~~l~~~ 120 (238)
+++++..+.+.+...
T Consensus 159 v~~L~~~L~~~l~~~ 173 (292)
T PRK00089 159 VDELLDVIAKYLPEG 173 (292)
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999887543
No 202
>KOG0074|consensus
Probab=98.53 E-value=1.9e-07 Score=72.28 Aligned_cols=111 Identities=21% Similarity=0.210 Sum_probs=82.7
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
|+++.++ .++|.+|| ...|..|+. +.|++|+|.|. |+..|+.+..-+.++.........|+++.+||.|+.
T Consensus 54 k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdll 132 (185)
T KOG0074|consen 54 KKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLL 132 (185)
T ss_pred EEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHH
Confidence 4555555 68999999 445777766 99999999999 999999998888888776656899999999999986
Q ss_pred CcccccHHHH-HHH--HHhCCCeEEEEccCCCCCHHHHHHHHH
Q psy14042 75 RARAVSSQDA-KNL--AASFKVKFIEVSVGIHHNVDELLVGIL 114 (238)
Q Consensus 75 ~~~~v~~~~~-~~~--~~~~~~~~~evSA~t~~gv~elf~~i~ 114 (238)
....+..... ..+ .....+...+|||.+++|+.+...++.
T Consensus 133 taa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~ 175 (185)
T KOG0074|consen 133 TAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQ 175 (185)
T ss_pred hhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchhhh
Confidence 5432222110 011 122235678999999999998888887
No 203
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.52 E-value=2.6e-07 Score=84.53 Aligned_cols=105 Identities=22% Similarity=0.202 Sum_probs=69.0
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc--c
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV--S 80 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v--~ 80 (238)
...+.+|| ++|...+.. .+|++|+|+|. +..........+..+... .-.|+++|+||+|+...... .
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~---gi~~iIVvvNK~Dl~~~~~~~~~ 155 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII---GIKNIVIVQNKIDLVSKEKALEN 155 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc---CCCeEEEEEEccccCCHHHHHHH
Confidence 46789999 666544333 78999999999 432112222222223221 33579999999999754322 1
Q ss_pred HHHHHHHHHhC---CCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 81 SQDAKNLAASF---KVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 81 ~~~~~~~~~~~---~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
.+++..+.+.. +++++++||++|+|++++++.|...+.
T Consensus 156 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 156 YEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 23444444432 678999999999999999999987653
No 204
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.51 E-value=5.5e-07 Score=82.64 Aligned_cols=82 Identities=26% Similarity=0.240 Sum_probs=59.2
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC-eEEEEccCCCCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV-KFIEVSVGIHHN 105 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~g 105 (238)
++|++++|+|. +..+..+ ..+...+++ .+.|+++|+||+|+...... ... +...++ +++++||++|.|
T Consensus 78 ~ad~vl~vvD~~~~~~~~d-~~i~~~l~~----~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~g 147 (429)
T TIGR03594 78 EADVILFVVDGREGLTPED-EEIAKWLRK----SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRG 147 (429)
T ss_pred hCCEEEEEEeCCCCCCHHH-HHHHHHHHH----hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCC
Confidence 89999999999 5433332 223333433 46899999999998754432 111 345666 699999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy14042 106 VDELLVGILNQIRL 119 (238)
Q Consensus 106 v~elf~~i~~~l~~ 119 (238)
+++++..+.+.+..
T Consensus 148 v~~ll~~i~~~l~~ 161 (429)
T TIGR03594 148 IGDLLDAILELLPE 161 (429)
T ss_pred hHHHHHHHHHhcCc
Confidence 99999999987754
No 205
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.50 E-value=1.3e-06 Score=85.69 Aligned_cols=103 Identities=18% Similarity=0.163 Sum_probs=75.8
Q ss_pred ECCeEEEEEEEe----CCCccccc---------------CCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEE
Q psy14042 7 GHSGKVRAIIWN----EQYEKLTS---------------SDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAII 66 (238)
Q Consensus 7 ~~~~~v~l~iWD----e~~~~l~~---------------~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piil 66 (238)
+.....++.+|| ..+..... .++|++++|+|. +.+ ....|..++.+ .+.|+++
T Consensus 45 ~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le---r~l~l~~ql~e----~giPvIv 117 (772)
T PRK09554 45 FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE---RNLYLTLQLLE----LGIPCIV 117 (772)
T ss_pred EEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch---hhHHHHHHHHH----cCCCEEE
Confidence 334456789999 33332111 178999999988 432 22345555554 5799999
Q ss_pred EEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 67 VANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 67 VgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
|.||+|+.+++.+. .+.+++.+.+|++++++||++++|++++++.+.+..
T Consensus 118 VlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 118 ALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 99999997665553 456788888999999999999999999999888654
No 206
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.50 E-value=4.4e-07 Score=87.06 Aligned_cols=101 Identities=11% Similarity=0.127 Sum_probs=67.0
Q ss_pred EEEEEe----CCCcc-cccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCccccc--HH
Q psy14042 13 RAIIWN----EQYEK-LTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARAVS--SQ 82 (238)
Q Consensus 13 ~l~iWD----e~~~~-l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~v~--~~ 82 (238)
.+.+|| ++|.. +... ++|++++|+|.+..........+..+.. .++| +++|+||+|+.++..+. .+
T Consensus 52 ~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~----lgi~~iIVVlNKiDlv~~~~~~~v~~ 127 (614)
T PRK10512 52 VLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQL----TGNPMLTVALTKADRVDEARIAEVRR 127 (614)
T ss_pred EEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHH----cCCCeEEEEEECCccCCHHHHHHHHH
Confidence 478999 66733 3333 9999999999943322222222332322 3455 57999999997543222 23
Q ss_pred HHHHHHHhCC---CeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 83 DAKNLAASFK---VKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 83 ~~~~~~~~~~---~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
++..+.+..+ .+++++||++|+|++++++.|.+..
T Consensus 128 ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 128 QVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred HHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence 4555555444 6899999999999999999998654
No 207
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.49 E-value=4.9e-07 Score=83.23 Aligned_cols=87 Identities=20% Similarity=0.104 Sum_probs=60.7
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHH----hCCCeEEEEccCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAA----SFKVKFIEVSVGI 102 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~----~~~~~~~evSA~t 102 (238)
.+|++|+|+|. +..+.++.. +...+.+ .+.|+++|+||+|+...... .+....+.. ...++++++||++
T Consensus 255 ~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~i~~~SA~~ 328 (435)
T PRK00093 255 RADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAPIVFISALT 328 (435)
T ss_pred HCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCCEEEEeCCC
Confidence 89999999999 766666543 3333333 56899999999999743221 111112222 2357899999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q psy14042 103 HHNVDELLVGILNQIRLK 120 (238)
Q Consensus 103 ~~gv~elf~~i~~~l~~~ 120 (238)
|.|++++|..+.+.....
T Consensus 329 ~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 329 GQGVDKLLEAIDEAYENA 346 (435)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999998766443
No 208
>PRK10218 GTP-binding protein; Provisional
Probab=98.47 E-value=8.7e-07 Score=84.76 Aligned_cols=110 Identities=13% Similarity=0.092 Sum_probs=74.0
Q ss_pred EEECCeEEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc
Q psy14042 5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR 77 (238)
Q Consensus 5 i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~ 77 (238)
+.+....+++.+|| +.|...+.. .+|++|+|+|.........+.++..+.. .+.|.+++.||+|+...+
T Consensus 61 ~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~----~gip~IVviNKiD~~~a~ 136 (607)
T PRK10218 61 TAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA----YGLKPIVVINKVDRPGAR 136 (607)
T ss_pred EEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH----cCCCEEEEEECcCCCCCc
Confidence 34445568999999 667665544 9999999999933333334444444443 578999999999997432
Q ss_pred cc-cHHHHHHHHH-------hCCCeEEEEccCCCC----------CHHHHHHHHHHHHH
Q psy14042 78 AV-SSQDAKNLAA-------SFKVKFIEVSVGIHH----------NVDELLVGILNQIR 118 (238)
Q Consensus 78 ~v-~~~~~~~~~~-------~~~~~~~evSA~t~~----------gv~elf~~i~~~l~ 118 (238)
.. ..+++..+.. ...+|++.+||++|+ |+..+++.|+..++
T Consensus 137 ~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 137 PDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred hhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 21 1123333321 235789999999998 58888888887664
No 209
>KOG1489|consensus
Probab=98.45 E-value=1e-06 Score=76.77 Aligned_cols=85 Identities=31% Similarity=0.349 Sum_probs=69.6
Q ss_pred CceEEEEEEEC-Cc---chHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCe-EEEEccC
Q psy14042 28 DETGLIIVWML-YK---PSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVK-FIEVSVG 101 (238)
Q Consensus 28 ~ad~~IlV~dv-d~---~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~-~~evSA~ 101 (238)
.++..++|.|+ .. .+|+.++.+..|+..|... .++|.++|+||+|+++.+ ...+.++++...-+ ++++||+
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~ 350 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAK 350 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeec
Confidence 78999999999 55 8999999999999888754 899999999999996321 22246677776654 9999999
Q ss_pred CCCCHHHHHHHHHH
Q psy14042 102 IHHNVDELLVGILN 115 (238)
Q Consensus 102 t~~gv~elf~~i~~ 115 (238)
+++|+++++..+-+
T Consensus 351 ~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 351 SGEGLEELLNGLRE 364 (366)
T ss_pred cccchHHHHHHHhh
Confidence 99999999887753
No 210
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.45 E-value=1.1e-06 Score=85.78 Aligned_cols=82 Identities=20% Similarity=0.199 Sum_probs=57.1
Q ss_pred CceEEEEEEECCcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC-eEEEEccCCCCC
Q psy14042 28 DETGLIIVWMLYKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV-KFIEVSVGIHHN 105 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~g 105 (238)
.+|++|+|+|.... +... ..|...++. .+.|+++|+||+|+..... ....+. ..+. ..+++||++|.|
T Consensus 354 ~aD~iL~VvDa~~~-~~~~d~~i~~~Lr~----~~~pvIlV~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~G 423 (712)
T PRK09518 354 LADAVVFVVDGQVG-LTSTDERIVRMLRR----AGKPVVLAVNKIDDQASEY----DAAEFW-KLGLGEPYPISAMHGRG 423 (712)
T ss_pred hCCEEEEEEECCCC-CCHHHHHHHHHHHh----cCCCEEEEEECcccccchh----hHHHHH-HcCCCCeEEEECCCCCC
Confidence 89999999999321 2222 345555554 6799999999999864321 112221 2232 357899999999
Q ss_pred HHHHHHHHHHHHHh
Q psy14042 106 VDELLVGILNQIRL 119 (238)
Q Consensus 106 v~elf~~i~~~l~~ 119 (238)
++++|..|++.+..
T Consensus 424 I~eLl~~i~~~l~~ 437 (712)
T PRK09518 424 VGDLLDEALDSLKV 437 (712)
T ss_pred chHHHHHHHHhccc
Confidence 99999999988754
No 211
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.43 E-value=5.9e-07 Score=71.58 Aligned_cols=79 Identities=28% Similarity=0.313 Sum_probs=60.4
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHH
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVD 107 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~ 107 (238)
+.|++|+|.|.. .++.-.....++.+ .+.|+++|.||+|+..++.+.. +...+++.+|+|++.+||++++|++
T Consensus 78 ~~D~ii~VvDa~--~l~r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~ 150 (156)
T PF02421_consen 78 KPDLIIVVVDAT--NLERNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGID 150 (156)
T ss_dssp SSSEEEEEEEGG--GHHHHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred CCCEEEEECCCC--CHHHHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHH
Confidence 789999998872 24443445566655 6799999999999876555433 4677788899999999999999999
Q ss_pred HHHHHH
Q psy14042 108 ELLVGI 113 (238)
Q Consensus 108 elf~~i 113 (238)
+++..|
T Consensus 151 ~L~~~I 156 (156)
T PF02421_consen 151 ELKDAI 156 (156)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 999875
No 212
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.41 E-value=8.2e-07 Score=74.03 Aligned_cols=95 Identities=16% Similarity=0.122 Sum_probs=60.9
Q ss_pred CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc-
Q psy14042 8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA- 78 (238)
Q Consensus 8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~- 78 (238)
++..+.+.+|| ++|...... .+|++|+|+|. +..++.. ..++..+.. .+.|+++|+||+|+...+.
T Consensus 67 ~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~~~~~~ 141 (213)
T cd04167 67 KGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRLILELK 141 (213)
T ss_pred CCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccCccccc
Confidence 35679999999 556544433 99999999999 5555543 344444433 4589999999999752110
Q ss_pred cc-----------HHHHHHHHHhCCC-------e----EEEEccCCCCCHH
Q psy14042 79 VS-----------SQDAKNLAASFKV-------K----FIEVSVGIHHNVD 107 (238)
Q Consensus 79 v~-----------~~~~~~~~~~~~~-------~----~~evSA~t~~gv~ 107 (238)
.. .+++...++..+. | +++.||+++|++.
T Consensus 142 l~~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 142 LPPNDAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 00 1123333443322 2 6789999999876
No 213
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.37 E-value=2.2e-06 Score=75.47 Aligned_cols=95 Identities=21% Similarity=0.192 Sum_probs=74.8
Q ss_pred CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEE-EccC
Q psy14042 28 DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIE-VSVG 101 (238)
Q Consensus 28 ~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~e-vSA~ 101 (238)
.+.+++.|.|+ . +++.+++..+..+|.+|... .+.|.+||+||+|+...++........+.+..+...+. +||.
T Consensus 237 Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~ 316 (369)
T COG0536 237 RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISAL 316 (369)
T ss_pred hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehh
Confidence 67778888888 2 45799999999999999755 89999999999997765554444555566666654222 9999
Q ss_pred CCCCHHHHHHHHHHHHHhhhc
Q psy14042 102 IHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 102 t~~gv~elf~~i~~~l~~~~~ 122 (238)
+++|++++...+.+.+.+.+.
T Consensus 317 t~~g~~~L~~~~~~~l~~~~~ 337 (369)
T COG0536 317 TREGLDELLRALAELLEETKA 337 (369)
T ss_pred cccCHHHHHHHHHHHHHHhhh
Confidence 999999999999998887763
No 214
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.37 E-value=1.8e-06 Score=68.44 Aligned_cols=87 Identities=17% Similarity=0.089 Sum_probs=56.1
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV 106 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv 106 (238)
++|.+++|.|. ++..- ....+...+... ..+.|+++|.||+||..+... ......+.+.+....+.+||+.+.|+
T Consensus 8 ~aD~il~VvD~~~p~~~-~~~~i~~~l~~~--~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~~~~ 83 (157)
T cd01858 8 SSDVVIQVLDARDPMGT-RCKHVEEYLKKE--KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNPFGK 83 (157)
T ss_pred hCCEEEEEEECCCCccc-cCHHHHHHHHhc--cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccccccH
Confidence 89999999999 54211 122333333322 246899999999999643321 22233333333334578999999999
Q ss_pred HHHHHHHHHHHH
Q psy14042 107 DELLVGILNQIR 118 (238)
Q Consensus 107 ~elf~~i~~~l~ 118 (238)
++++..+...+.
T Consensus 84 ~~L~~~l~~~~~ 95 (157)
T cd01858 84 GSLIQLLRQFSK 95 (157)
T ss_pred HHHHHHHHHHHh
Confidence 999999876543
No 215
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.37 E-value=3.9e-06 Score=71.20 Aligned_cols=50 Identities=30% Similarity=0.335 Sum_probs=39.5
Q ss_pred CCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 61 TRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 61 ~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
.+|+++|+||+|+.. .+++..+++. .+++++||+++.|++++|+.+.+.+
T Consensus 176 y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 176 YIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred EeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 469999999999854 3344445443 4689999999999999999999765
No 216
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.31 E-value=4.2e-06 Score=66.27 Aligned_cols=85 Identities=15% Similarity=0.084 Sum_probs=55.9
Q ss_pred eEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHH
Q psy14042 30 TGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDE 108 (238)
Q Consensus 30 d~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~e 108 (238)
|.+++|.|. ++.+... .++... .....+.|+++|.||+||....++ .+....+.+..+.+++.+||+++.|+++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~--~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~ 75 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERV--LIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEK 75 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHH--HHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhh
Confidence 678999999 6544432 233311 111267999999999999643221 1122233334466789999999999999
Q ss_pred HHHHHHHHHHh
Q psy14042 109 LLVGILNQIRL 119 (238)
Q Consensus 109 lf~~i~~~l~~ 119 (238)
+++.+.+...+
T Consensus 76 L~~~i~~~~~~ 86 (155)
T cd01849 76 KESAFTKQTNS 86 (155)
T ss_pred HHHHHHHHhHH
Confidence 99999876543
No 217
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.29 E-value=3.8e-06 Score=84.39 Aligned_cols=97 Identities=21% Similarity=0.295 Sum_probs=65.0
Q ss_pred EEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc--
Q psy14042 14 AIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS-- 80 (238)
Q Consensus 14 l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~-- 80 (238)
+.+|| +.|..+... .+|++++|+|. + +.+++.+. .+.. .++|+++|+||+|+.......
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~----~~iPiIVViNKiDL~~~~~~~~~ 599 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ----YKTPFVVAANKIDLIPGWNISED 599 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH----cCCCEEEEEECCCCccccccccc
Confidence 79999 777666544 79999999999 4 45555443 2332 468999999999995321110
Q ss_pred --------------HHHHH--------HHHH------------hC--CCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 81 --------------SQDAK--------NLAA------------SF--KVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 81 --------------~~~~~--------~~~~------------~~--~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
..+.. ++++ ++ .++++++||+||+|+++|+..|.....
T Consensus 600 ~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 600 EPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 01110 0111 11 357999999999999999988765443
No 218
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.29 E-value=3.1e-06 Score=71.33 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=43.5
Q ss_pred CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+..+.+++|| +.|...... .+|++|+|+|+ ...+.+. +..+..+.. .+.|+++|+||+|+.
T Consensus 70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 4578999999 666554443 99999999999 5444443 333333332 468999999999986
No 219
>KOG1707|consensus
Probab=98.27 E-value=8.7e-07 Score=82.46 Aligned_cols=111 Identities=18% Similarity=0.144 Sum_probs=80.4
Q ss_pred eEEEEEEEeC-----CCcccccC--CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCC-CCCCEEEEEEeccCCCcccc
Q psy14042 10 GKVRAIIWNE-----QYEKLTSS--DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYL-RTRPAIIVANKIDLARARAV 79 (238)
Q Consensus 10 ~~v~l~iWDe-----~~~~l~~~--~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~-~~~piilVgNK~DL~~~~~v 79 (238)
..|-..|.|. .--.+... .||++.++|++ ++.+++.+. .|++.+++-.+. .++|+||||||+|+......
T Consensus 54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 3455677771 11223333 89999999999 889999994 699999886644 68999999999999754443
Q ss_pred cHHH-HHHHHHhCC-C-eEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 80 SSQD-AKNLAASFK-V-KFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 80 ~~~~-~~~~~~~~~-~-~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
+.+. ...+..++. + ..++|||++..++.++|+-.-+.+..-
T Consensus 134 s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVihP 177 (625)
T KOG1707|consen 134 SDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIHP 177 (625)
T ss_pred chhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeecc
Confidence 3332 444555543 3 378899999999999999877665543
No 220
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.27 E-value=2.7e-06 Score=70.76 Aligned_cols=95 Identities=22% Similarity=0.203 Sum_probs=57.8
Q ss_pred EEEEEEe----CCCcc-cccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc----cc
Q psy14042 12 VRAIIWN----EQYEK-LTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA----VS 80 (238)
Q Consensus 12 v~l~iWD----e~~~~-l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~----v~ 80 (238)
.++.+|| ++|.. +... .+|++|+|+|...............+.. . ...++|+|.||+|+..... ..
T Consensus 77 ~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~--~~~~iIvviNK~D~~~~~~~~~~~i 153 (208)
T cd04166 77 RKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL-L--GIRHVVVAVNKMDLVDYSEEVFEEI 153 (208)
T ss_pred ceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-c--CCCcEEEEEEchhcccCCHHHHHHH
Confidence 4678999 55533 2222 8999999999933222222222222222 1 2245788999999964321 11
Q ss_pred HHHHHHHHHhCC---CeEEEEccCCCCCHHHH
Q psy14042 81 SQDAKNLAASFK---VKFIEVSVGIHHNVDEL 109 (238)
Q Consensus 81 ~~~~~~~~~~~~---~~~~evSA~t~~gv~el 109 (238)
..+...+.+.++ .+++.+||++|.|+++.
T Consensus 154 ~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 154 VADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 234555566666 35899999999998854
No 221
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.25 E-value=4.6e-06 Score=79.67 Aligned_cols=96 Identities=20% Similarity=0.257 Sum_probs=65.2
Q ss_pred EEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc---
Q psy14042 14 AIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV--- 79 (238)
Q Consensus 14 l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v--- 79 (238)
+.+|| +.|..++.. .+|++|+|+|. + +.+++.+.. +.. .++|+++++||+|+......
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~----~~vpiIvviNK~D~~~~~~~~~~ 144 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR----RKTPFVVAANKIDRIPGWKSTED 144 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH----cCCCEEEEEECcCCchhhhhhcC
Confidence 68999 788877665 79999999999 5 566665532 222 57899999999998521100
Q ss_pred -c------------HH-------HH-HHHHH------------h--CCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 80 -S------------SQ-------DA-KNLAA------------S--FKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 80 -~------------~~-------~~-~~~~~------------~--~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
. .+ +. ..+++ + ..++++++||++|+|+++++..+...+
T Consensus 145 ~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 145 APFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred chHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 0 00 00 11111 1 136799999999999999998887544
No 222
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=6.2e-05 Score=69.83 Aligned_cols=162 Identities=17% Similarity=0.166 Sum_probs=97.6
Q ss_pred EEEEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc
Q psy14042 12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS 80 (238)
Q Consensus 12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~ 80 (238)
-.+.+.| |-|..|+.. =+|.+|||.++ | +++.+.+. .++. .+.|++++.||+|.++. .
T Consensus 55 ~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~----hak~----a~vP~iVAiNKiDk~~~---n 123 (509)
T COG0532 55 PGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAIN----HAKA----AGVPIVVAINKIDKPEA---N 123 (509)
T ss_pred ceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHH----HHHH----CCCCEEEEEecccCCCC---C
Confidence 4577888 788888776 57999999999 4 45555443 2332 78999999999999732 2
Q ss_pred HHHHHHHH-------HhCC--CeEEEEccCCCCCHHHHHHHHHHHHHhhhcccccCCCCCCCcCccCcceeecceEEeec
Q psy14042 81 SQDAKNLA-------ASFK--VKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGGAQAAAPWKSNTTLVRASAVIVGS 151 (238)
Q Consensus 81 ~~~~~~~~-------~~~~--~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (238)
+.....-. +.++ ..++++||++|+|+++|+..+.-...-. +.+..++. ...+..+...
T Consensus 124 p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~--elka~~~~-----------~a~gtviE~~ 190 (509)
T COG0532 124 PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEVL--ELKANPEG-----------PARGTVIEVK 190 (509)
T ss_pred HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHHH--hhhcCCCC-----------cceEEEEEEE
Confidence 22222222 2333 4699999999999999999888555433 21111111 2223333222
Q ss_pred -ccCceeeecccceeeeEEEEeCCCCCeEEEEeeCceEE-EEeCCCCeeeeee
Q psy14042 152 -VDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVH-LYDYEGNFMNKVS 202 (238)
Q Consensus 152 -~~g~rv~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~d~~g~~~~~~~ 202 (238)
..|. |.-.. .+.+----.-+-.+..|+..|-|. .+|..|..+..-.
T Consensus 191 ~dkG~---G~vat--viv~~GtL~~GD~iv~g~~~g~I~t~v~~~~~~i~~a~ 238 (509)
T COG0532 191 LDKGL---GPVAT--VIVQDGTLKKGDIIVAGGEYGRVRTMVDDLGKPIKEAG 238 (509)
T ss_pred eccCC---CceEE--EEEecCeEecCCEEEEccCCCceEEeehhcCCCccccC
Confidence 2222 22111 222211234566778888888775 5677787765433
No 223
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.22 E-value=2.5e-06 Score=71.55 Aligned_cols=94 Identities=15% Similarity=0.128 Sum_probs=55.6
Q ss_pred eEEEEEEEe----CCCcccccC---CceEEEEEEEC-Ccc---hH----HHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKP---SY----HRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~---s~----~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
...++.+|| .+|...... .+|++|+|.|. +.. .| +..+.+ ..+.. . ...|+++|+||+|+.
T Consensus 75 ~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~-~--~~~~iiivvNK~Dl~ 150 (219)
T cd01883 75 EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART-L--GVKQLIVAVNKMDDV 150 (219)
T ss_pred CCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH-c--CCCeEEEEEEccccc
Confidence 347889999 233322211 79999999999 531 11 112222 11211 1 346899999999997
Q ss_pred Cc---ccc---cHHHHHHHHHhCC-----CeEEEEccCCCCCHH
Q psy14042 75 RA---RAV---SSQDAKNLAASFK-----VKFIEVSVGIHHNVD 107 (238)
Q Consensus 75 ~~---~~v---~~~~~~~~~~~~~-----~~~~evSA~t~~gv~ 107 (238)
.. +.. ..+++..+.+..+ ++++++||++|.|++
T Consensus 151 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 151 TVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 32 111 1123333344443 679999999999987
No 224
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.19 E-value=9.2e-06 Score=74.09 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=59.9
Q ss_pred ECCeEEEEEEEe----CCCcccc-cC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEE-EEEEeccCCCccc
Q psy14042 7 GHSGKVRAIIWN----EQYEKLT-SS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAI-IVANKIDLARARA 78 (238)
Q Consensus 7 ~~~~~v~l~iWD----e~~~~l~-~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~pii-lVgNK~DL~~~~~ 78 (238)
++....++.+|| ++|.... .. ++|++++|+|.+..........+..+.. .++|.+ +|.||+|+....+
T Consensus 70 ~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~ 145 (394)
T TIGR00485 70 YETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQ----VGVPYIVVFLNKCDMVDDEE 145 (394)
T ss_pred EcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH----cCCCEEEEEEEecccCCHHH
Confidence 334456788999 5664322 22 7899999999943222223333334433 457755 6899999975433
Q ss_pred cc---HHHHHHHHHhCC-----CeEEEEccCCCC
Q psy14042 79 VS---SQDAKNLAASFK-----VKFIEVSVGIHH 104 (238)
Q Consensus 79 v~---~~~~~~~~~~~~-----~~~~evSA~t~~ 104 (238)
.. .++++.+++..+ ++++++||++|.
T Consensus 146 ~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 146 LLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 22 235666666654 789999999885
No 225
>PRK12736 elongation factor Tu; Reviewed
Probab=98.18 E-value=8.2e-06 Score=74.44 Aligned_cols=105 Identities=16% Similarity=0.226 Sum_probs=66.6
Q ss_pred eEEEEEEEe----CCCcc-cccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCccccc-
Q psy14042 10 GKVRAIIWN----EQYEK-LTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARAVS- 80 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~-l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~v~- 80 (238)
....+.++| ++|.. +... .+|++++|.|.+..........+..+.. .++| +|++.||+|+....+..
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~ 148 (394)
T PRK12736 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLE 148 (394)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHH
Confidence 345678999 45533 2222 8899999999943322333334444433 4678 67899999997443322
Q ss_pred --HHHHHHHHHhCC-----CeEEEEccCCCC--------CHHHHHHHHHHHHH
Q psy14042 81 --SQDAKNLAASFK-----VKFIEVSVGIHH--------NVDELLVGILNQIR 118 (238)
Q Consensus 81 --~~~~~~~~~~~~-----~~~~evSA~t~~--------gv~elf~~i~~~l~ 118 (238)
.+++..+.+..+ ++++.+||++|. +++++++.+.+.+.
T Consensus 149 ~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 149 LVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 235555555554 579999999983 56777777765543
No 226
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.17 E-value=6.9e-06 Score=66.37 Aligned_cols=75 Identities=16% Similarity=0.118 Sum_probs=50.7
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc--ccHHHHHHHHHhCC--CeEEEEccCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA--VSSQDAKNLAASFK--VKFIEVSVGI 102 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~--v~~~~~~~~~~~~~--~~~~evSA~t 102 (238)
.++++++|+|. ++-+..+. .++..+.. .+.|+++|+||+|+..... ...++++...+..+ .+++++||++
T Consensus 100 ~~~~ii~vvd~~~~~~~~~~-~~~~~~~~----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~ 174 (179)
T TIGR03598 100 NLKGVVLLMDIRHPLKELDL-EMLEWLRE----RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLK 174 (179)
T ss_pred hhcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCC
Confidence 56899999999 54444443 23333332 5789999999999964322 22344555555544 4799999999
Q ss_pred CCCHH
Q psy14042 103 HHNVD 107 (238)
Q Consensus 103 ~~gv~ 107 (238)
|+|++
T Consensus 175 g~gi~ 179 (179)
T TIGR03598 175 KTGID 179 (179)
T ss_pred CCCCC
Confidence 99974
No 227
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.15 E-value=1.5e-05 Score=67.74 Aligned_cols=63 Identities=19% Similarity=0.078 Sum_probs=44.2
Q ss_pred ECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 7 GHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 7 ~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+....+++.+|| .+|...+.. .+|++++|+|. +.... ....+...+.+ .+.|+++++||+|+.
T Consensus 59 ~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~ 129 (237)
T cd04168 59 FQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRA 129 (237)
T ss_pred EEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECcccc
Confidence 334457899999 455544333 89999999999 54332 34455555544 578999999999985
No 228
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.14 E-value=3.2e-06 Score=65.90 Aligned_cols=71 Identities=11% Similarity=0.030 Sum_probs=48.2
Q ss_pred CceEEEEEEEC-CcchHH--HHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCC
Q psy14042 28 DETGLIIVWML-YKPSYH--RVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHH 104 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~--~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~ 104 (238)
++|++++|+|. ++.+.. .+..|+.. .. .+.|+++|+||+||..+..+ ....+..+..+.+++.+||+++.
T Consensus 11 ~aD~vl~ViD~~~p~~~~~~~l~~~l~~---~~--~~k~~iivlNK~DL~~~~~~--~~~~~~~~~~~~~ii~iSa~~~~ 83 (141)
T cd01857 11 RSDIVVQIVDARNPLLFRPPDLERYVKE---VD--PRKKNILLLNKADLLTEEQR--KAWAEYFKKEGIVVVFFSALKEN 83 (141)
T ss_pred hCCEEEEEEEccCCcccCCHHHHHHHHh---cc--CCCcEEEEEechhcCCHHHH--HHHHHHHHhcCCeEEEEEecCCC
Confidence 89999999999 654433 23333332 21 47899999999999643322 23334455567889999999887
Q ss_pred C
Q psy14042 105 N 105 (238)
Q Consensus 105 g 105 (238)
+
T Consensus 84 ~ 84 (141)
T cd01857 84 A 84 (141)
T ss_pred c
Confidence 5
No 229
>KOG0462|consensus
Probab=98.13 E-value=1.8e-05 Score=73.51 Aligned_cols=108 Identities=19% Similarity=0.107 Sum_probs=71.8
Q ss_pred CCeEEEEEEEe----CCCcc-cccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc-
Q psy14042 8 HSGKVRAIIWN----EQYEK-LTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV- 79 (238)
Q Consensus 8 ~~~~v~l~iWD----e~~~~-l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v- 79 (238)
+|+.+.|++-| -.|+. +..+ -++|+|+|.|..+..-..... +--+.+. .+..+|.|.||+|++..+.-
T Consensus 121 ~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~a--nf~lAfe--~~L~iIpVlNKIDlp~adpe~ 196 (650)
T KOG0462|consen 121 DGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVA--NFYLAFE--AGLAIIPVLNKIDLPSADPER 196 (650)
T ss_pred cCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHH--HHHHHHH--cCCeEEEeeeccCCCCCCHHH
Confidence 47789999999 44443 2222 789999999994433221111 1111122 67889999999999864321
Q ss_pred cHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 80 SSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 80 ~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
-..+...+......+.+.+||++|.|+++++.+|++.++.
T Consensus 197 V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 197 VENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred HHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 1223344444445579999999999999999999987753
No 230
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.13 E-value=1.6e-05 Score=62.05 Aligned_cols=84 Identities=18% Similarity=0.130 Sum_probs=53.4
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc--cHHHHHHHHH--hCCCeEEEEccCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV--SSQDAKNLAA--SFKVKFIEVSVGI 102 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~~~--~~~~~~~evSA~t 102 (238)
..+++++++|. +..+... ......+.. .+.|+++|+||+|+...... .........+ ....+++++||++
T Consensus 81 ~~~~~~~v~d~~~~~~~~~-~~~~~~l~~----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~ 155 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEID-LEMLDWLEE----LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLK 155 (170)
T ss_pred hhhEEEEEEEcCcCCCHhH-HHHHHHHHH----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCC
Confidence 46788888888 3322211 122222322 35899999999999543322 1222333333 3456799999999
Q ss_pred CCCHHHHHHHHHHH
Q psy14042 103 HHNVDELLVGILNQ 116 (238)
Q Consensus 103 ~~gv~elf~~i~~~ 116 (238)
+.|++++++.|.+.
T Consensus 156 ~~~~~~l~~~l~~~ 169 (170)
T cd01876 156 GQGIDELRALIEKW 169 (170)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999864
No 231
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.12 E-value=5.1e-06 Score=68.89 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=49.5
Q ss_pred eEEEEEEEe----CCCcccccC---Cc-eEEEEEEEC-Cc-chHHHHHHHHHHHHHhcC--CCCCCEEEEEEeccCCC
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DE-TGLIIVWML-YK-PSYHRVEQDVIRLHEEGY--LRTRPAIIVANKIDLAR 75 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~a-d~~IlV~dv-d~-~s~~~~~~~~~~l~~~~~--~~~~piilVgNK~DL~~ 75 (238)
..+.+.+|| ++|+..+.. ++ +++|+|+|. +. .++..+..|+..+..... ...+|++||+||+|+..
T Consensus 46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 457799999 667665543 77 999999999 65 688888777766543321 26899999999999853
No 232
>PRK13796 GTPase YqeH; Provisional
Probab=98.11 E-value=6.3e-06 Score=74.48 Aligned_cols=90 Identities=23% Similarity=0.248 Sum_probs=61.0
Q ss_pred CCCcccccC--Cce-EEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH----HHHHHHHh
Q psy14042 19 EQYEKLTSS--DET-GLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ----DAKNLAAS 90 (238)
Q Consensus 19 e~~~~l~~~--~ad-~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~----~~~~~~~~ 90 (238)
+.|+.+... .++ .+++|.|+ |.. ..|..++.++. .+.|+++|+||+||... ....+ ....+++.
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~--~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~ 128 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV--GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKE 128 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh--CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHh
Confidence 445443333 445 77777787 522 34566666654 47899999999999642 22222 33444566
Q ss_pred CCC---eEEEEccCCCCCHHHHHHHHHHH
Q psy14042 91 FKV---KFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 91 ~~~---~~~evSA~t~~gv~elf~~i~~~ 116 (238)
.++ .++.+||++++|+++++..+.+.
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 676 58999999999999999999764
No 233
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.10 E-value=2.4e-05 Score=63.22 Aligned_cols=99 Identities=16% Similarity=0.183 Sum_probs=76.8
Q ss_pred EEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHH
Q psy14042 12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQD 83 (238)
Q Consensus 12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~ 83 (238)
..+.++| +||+-++.. ++.++|++.|. ....| .....++.+... ..+|++++.||.||.... ++++
T Consensus 68 ~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~---~~ip~vVa~NK~DL~~a~--ppe~ 141 (187)
T COG2229 68 TGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR---NPIPVVVAINKQDLFDAL--PPEK 141 (187)
T ss_pred ceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc---cCCCEEEEeeccccCCCC--CHHH
Confidence 3466777 899988876 99999999999 77777 556666665442 239999999999997643 4556
Q ss_pred HHHHHHhC--CCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 84 AKNLAASF--KVKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 84 ~~~~~~~~--~~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
.+++.+.. ..+.++++|..++++.+.+..+...
T Consensus 142 i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 142 IREALKLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred HHHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 66655543 8899999999999999998888744
No 234
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.09 E-value=2.4e-05 Score=65.96 Aligned_cols=99 Identities=19% Similarity=0.095 Sum_probs=63.6
Q ss_pred EEEEEEe----CCCccc-cc----CCceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc--
Q psy14042 12 VRAIIWN----EQYEKL-TS----SDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS-- 80 (238)
Q Consensus 12 v~l~iWD----e~~~~l-~~----~~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~-- 80 (238)
..+.+.| ++|..- .. ..+|++++|.|.+...-.....++..+.. .++|+++|.||+|+.......
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~----~~ip~ivvvNK~D~~~~~~~~~~ 159 (224)
T cd04165 84 KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALA----LNIPVFVVVTKIDLAPANILQET 159 (224)
T ss_pred cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHH----cCCCEEEEEECccccCHHHHHHH
Confidence 4577788 555321 11 15799999999844333444555555544 568999999999986433221
Q ss_pred HHHHHHHHHh--------------------------CCCeEEEEccCCCCCHHHHHHHHH
Q psy14042 81 SQDAKNLAAS--------------------------FKVKFIEVSVGIHHNVDELLVGIL 114 (238)
Q Consensus 81 ~~~~~~~~~~--------------------------~~~~~~evSA~t~~gv~elf~~i~ 114 (238)
.++...+.+. ...|+|.+||.+|+|++++...|.
T Consensus 160 ~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 160 LKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 1222222221 124899999999999999987775
No 235
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.08 E-value=6.8e-06 Score=64.39 Aligned_cols=77 Identities=23% Similarity=0.198 Sum_probs=57.0
Q ss_pred CceEEEEEEEC-Ccch-HHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCe-EEEEccCCCC
Q psy14042 28 DETGLIIVWML-YKPS-YHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVK-FIEVSVGIHH 104 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s-~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~-~~evSA~t~~ 104 (238)
+||.+++|.|. ++.+ |- +. +...-++|+|-|.||+|+... ....+.++++.+..|+. .|++|+.+|+
T Consensus 63 dad~V~ll~dat~~~~~~p------P~---fa~~f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~e 132 (143)
T PF10662_consen 63 DADVVLLLQDATEPRSVFP------PG---FASMFNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGE 132 (143)
T ss_pred hCCEEEEEecCCCCCccCC------ch---hhcccCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCc
Confidence 99999999999 5432 22 00 111246899999999999843 22445677777888874 8999999999
Q ss_pred CHHHHHHHHH
Q psy14042 105 NVDELLVGIL 114 (238)
Q Consensus 105 gv~elf~~i~ 114 (238)
|+++|+..|-
T Consensus 133 Gi~eL~~~L~ 142 (143)
T PF10662_consen 133 GIEELKDYLE 142 (143)
T ss_pred CHHHHHHHHh
Confidence 9999998763
No 236
>PRK01889 GTPase RsgA; Reviewed
Probab=98.05 E-value=2.6e-05 Score=70.26 Aligned_cols=80 Identities=21% Similarity=0.191 Sum_probs=57.7
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHH-hCCCeEEEEccCCCCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAA-SFKVKFIEVSVGIHHN 105 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~-~~~~~~~evSA~t~~g 105 (238)
++|.+++|.++ ..-+...+..++..+.. .++|.+||.||+||..... +....+.. ..+.+++.+|++++.|
T Consensus 112 NvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g~g 184 (356)
T PRK01889 112 NVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDGEG 184 (356)
T ss_pred eCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCCcc
Confidence 78999999999 44445556666666654 6788899999999975421 11222222 4578999999999999
Q ss_pred HHHHHHHHH
Q psy14042 106 VDELLVGIL 114 (238)
Q Consensus 106 v~elf~~i~ 114 (238)
++++...+.
T Consensus 185 l~~L~~~L~ 193 (356)
T PRK01889 185 LDVLAAWLS 193 (356)
T ss_pred HHHHHHHhh
Confidence 999888774
No 237
>COG2262 HflX GTPases [General function prediction only]
Probab=98.05 E-value=3.3e-05 Score=69.60 Aligned_cols=97 Identities=22% Similarity=0.158 Sum_probs=67.8
Q ss_pred CCCcccccC--CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeE
Q psy14042 19 EQYEKLTSS--DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKF 95 (238)
Q Consensus 19 e~~~~l~~~--~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~ 95 (238)
+-|++-... .||.++.|.|. ++...+.++.-.+-|.... ..+.|+|+|.||+|+..+.. .......... ..
T Consensus 260 ~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~-~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~ 333 (411)
T COG2262 260 EAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIG-ADEIPIILVLNKIDLLEDEE----ILAELERGSP-NP 333 (411)
T ss_pred HHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcC-CCCCCEEEEEecccccCchh----hhhhhhhcCC-Ce
Confidence 455554433 99999999999 8866666655555444432 36699999999999764433 1111111222 58
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 96 IEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 96 ~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
+.+||++|.|++.++..|.+.+....
T Consensus 334 v~iSA~~~~gl~~L~~~i~~~l~~~~ 359 (411)
T COG2262 334 VFISAKTGEGLDLLRERIIELLSGLR 359 (411)
T ss_pred EEEEeccCcCHHHHHHHHHHHhhhcc
Confidence 88999999999999999999887554
No 238
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.05 E-value=1.9e-05 Score=63.48 Aligned_cols=83 Identities=22% Similarity=0.057 Sum_probs=55.3
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV 106 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv 106 (238)
++|.+++|+|. ++..-.+ ..+.. .. .+.|+++|.||+||.....+ ....+..+..+..++.+||+++.|+
T Consensus 19 ~aD~il~v~D~~~~~~~~~-~~i~~----~~--~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iSa~~~~gi 89 (171)
T cd01856 19 LVDLVIEVRDARIPLSSRN-PLLEK----IL--GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVNAKSGKGV 89 (171)
T ss_pred hCCEEEEEeeccCccCcCC-hhhHh----Hh--cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEECCCcccH
Confidence 89999999999 4432211 11222 21 45799999999999643221 1111222334567899999999999
Q ss_pred HHHHHHHHHHHHh
Q psy14042 107 DELLVGILNQIRL 119 (238)
Q Consensus 107 ~elf~~i~~~l~~ 119 (238)
+++...+...+..
T Consensus 90 ~~L~~~l~~~l~~ 102 (171)
T cd01856 90 KKLLKAAKKLLKD 102 (171)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887643
No 239
>COG1159 Era GTPase [General function prediction only]
Probab=97.98 E-value=3.6e-05 Score=66.76 Aligned_cols=90 Identities=22% Similarity=0.131 Sum_probs=63.5
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCC-CeEEEEccCCCCCH
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFK-VKFIEVSVGIHHNV 106 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~-~~~~evSA~t~~gv 106 (238)
++|.+++|.|.++.--...+..++.++. .+.|++++.||+|..............+..... ...+++||++|.|+
T Consensus 85 dvDlilfvvd~~~~~~~~d~~il~~lk~----~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~ 160 (298)
T COG1159 85 DVDLILFVVDADEGWGPGDEFILEQLKK----TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNV 160 (298)
T ss_pred cCcEEEEEEeccccCCccHHHHHHHHhh----cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCH
Confidence 8999999998843222233445555544 578999999999987655532223333333333 36999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q psy14042 107 DELLVGILNQIRLKR 121 (238)
Q Consensus 107 ~elf~~i~~~l~~~~ 121 (238)
+.+...+...+++..
T Consensus 161 ~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 161 DTLLEIIKEYLPEGP 175 (298)
T ss_pred HHHHHHHHHhCCCCC
Confidence 999999998887654
No 240
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.97 E-value=2.1e-05 Score=65.14 Aligned_cols=78 Identities=19% Similarity=0.088 Sum_probs=51.0
Q ss_pred ceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCE--EEEEEeccCCCcccccHHHHHHHHHh--CCCeEEEEccCCC
Q psy14042 29 ETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPA--IIVANKIDLARARAVSSQDAKNLAAS--FKVKFIEVSVGIH 103 (238)
Q Consensus 29 ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~pi--ilVgNK~DL~~~~~v~~~~~~~~~~~--~~~~~~evSA~t~ 103 (238)
++.+|+|+|. +-++... ... ..+.. ++++||+|+........+...+.++. .+.+++++||++|
T Consensus 113 ~~~~i~vvD~~~~~~~~~--~~~---------~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g 181 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR--KGG---------PGITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTK 181 (199)
T ss_pred hCcEEEEEEcchhhhhhh--hhH---------hHhhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 6778999998 4433211 111 22333 78899999974322223333333333 4578999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy14042 104 HNVDELLVGILNQI 117 (238)
Q Consensus 104 ~gv~elf~~i~~~l 117 (238)
+|++++|+++.+.+
T Consensus 182 ~gi~el~~~i~~~~ 195 (199)
T TIGR00101 182 EGLDTVIDWIEHYA 195 (199)
T ss_pred CCHHHHHHHHHhhc
Confidence 99999999998654
No 241
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.97 E-value=6.2e-05 Score=62.12 Aligned_cols=92 Identities=11% Similarity=0.160 Sum_probs=57.4
Q ss_pred EEEEEEEe----CCCc-ccccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCcccc---
Q psy14042 11 KVRAIIWN----EQYE-KLTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARAV--- 79 (238)
Q Consensus 11 ~v~l~iWD----e~~~-~l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~v--- 79 (238)
..++.+.| .+|. .+... .+|++++|.|.....-...+..+..+.+ .+.| +|+|.||.|+....+.
T Consensus 64 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~ 139 (195)
T cd01884 64 NRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLEL 139 (195)
T ss_pred CeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHH
Confidence 34667888 2332 22222 8999999999943322333344444443 4566 7899999999643322
Q ss_pred cHHHHHHHHHhCC-----CeEEEEccCCCCCH
Q psy14042 80 SSQDAKNLAASFK-----VKFIEVSVGIHHNV 106 (238)
Q Consensus 80 ~~~~~~~~~~~~~-----~~~~evSA~t~~gv 106 (238)
..+++..+.+..+ ++++.+||++|.|+
T Consensus 140 ~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 140 VEMEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 2234555555543 67999999999985
No 242
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.94 E-value=0.00021 Score=65.64 Aligned_cols=101 Identities=17% Similarity=0.197 Sum_probs=68.1
Q ss_pred CCeEEEEEEEe----CCCcc-cccC--CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042 8 HSGKVRAIIWN----EQYEK-LTSS--DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA 76 (238)
Q Consensus 8 ~~~~v~l~iWD----e~~~~-l~~~--~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~ 76 (238)
+|..+.|++-| -.|.- +.++ -+.|+++|.|. . .+++.++ +-- .. .+.-+|-|.||+||+..
T Consensus 72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~---YlA---le--~~LeIiPViNKIDLP~A 143 (603)
T COG0481 72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANV---YLA---LE--NNLEIIPVLNKIDLPAA 143 (603)
T ss_pred CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHH---HHH---HH--cCcEEEEeeecccCCCC
Confidence 56789999999 23321 2222 78899999998 3 2333322 111 22 67888999999999854
Q ss_pred ccccHHHH-HHHHHhCCCe---EEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 77 RAVSSQDA-KNLAASFKVK---FIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 77 ~~v~~~~~-~~~~~~~~~~---~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
. ++.. .+...-.|++ .+.+|||+|.||+++++.|++.++.
T Consensus 144 d---pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 144 D---PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred C---HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 2 2222 2333445654 7899999999999999999987754
No 243
>PRK12735 elongation factor Tu; Reviewed
Probab=97.93 E-value=5e-05 Score=69.34 Aligned_cols=104 Identities=14% Similarity=0.195 Sum_probs=65.5
Q ss_pred eEEEEEEEe----CCCc-ccccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEE-EEEEeccCCCcccc--
Q psy14042 10 GKVRAIIWN----EQYE-KLTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAI-IVANKIDLARARAV-- 79 (238)
Q Consensus 10 ~~v~l~iWD----e~~~-~l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~pii-lVgNK~DL~~~~~v-- 79 (238)
...++.++| ++|. .+... ++|++++|+|............+..+.. .++|.+ ++.||+|+....+.
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~ 148 (396)
T PRK12735 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLE 148 (396)
T ss_pred CCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHH
Confidence 345678999 4442 23322 8899999999943333333344444433 467855 67999999743222
Q ss_pred -cHHHHHHHHHhCC-----CeEEEEccCCCC----------CHHHHHHHHHHHH
Q psy14042 80 -SSQDAKNLAASFK-----VKFIEVSVGIHH----------NVDELLVGILNQI 117 (238)
Q Consensus 80 -~~~~~~~~~~~~~-----~~~~evSA~t~~----------gv~elf~~i~~~l 117 (238)
...+++.+.+..+ ++++++||++|+ ++.++++.|...+
T Consensus 149 ~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 149 LVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 2235556666543 679999999985 5677777776543
No 244
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.88 E-value=4e-05 Score=71.05 Aligned_cols=95 Identities=12% Similarity=0.119 Sum_probs=61.7
Q ss_pred eEEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHH-------HHHHHHHHHHhcCCCCCC-EEEEEEeccCC
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHR-------VEQDVIRLHEEGYLRTRP-AIIVANKIDLA 74 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~-------~~~~~~~l~~~~~~~~~p-iilVgNK~DL~ 74 (238)
....+.+.| ++|...... .+|++|+|+|.....|+. .+.....+.. .++| +|++.||+|+.
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDAT 158 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccCC
Confidence 356788899 566443322 999999999995566642 2222222222 4564 78899999986
Q ss_pred Cc---cc---ccHHHHHHHHHhCC-----CeEEEEccCCCCCHHH
Q psy14042 75 RA---RA---VSSQDAKNLAASFK-----VKFIEVSVGIHHNVDE 108 (238)
Q Consensus 75 ~~---~~---v~~~~~~~~~~~~~-----~~~~evSA~t~~gv~e 108 (238)
.. +. ...++++.+++..| ++|+++||++|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 21 11 01345666677665 6799999999999864
No 245
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.87 E-value=7.1e-05 Score=65.03 Aligned_cols=85 Identities=19% Similarity=0.160 Sum_probs=57.5
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV 106 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv 106 (238)
.+|.+|+|.|. ++.+..+ .++.++. .+.|+++|.||+||...... ....+.+ +..+.+++.+||+++.|+
T Consensus 21 ~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~-~~~~~~~-~~~~~~vi~iSa~~~~gi 91 (276)
T TIGR03596 21 LVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVT-KQWLKYF-EEKGIKALAINAKKGKGV 91 (276)
T ss_pred hCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHH-HHHHHHH-HHcCCeEEEEECCCcccH
Confidence 89999999999 5433222 1222221 35899999999999643221 1122222 335678899999999999
Q ss_pred HHHHHHHHHHHHhhh
Q psy14042 107 DELLVGILNQIRLKR 121 (238)
Q Consensus 107 ~elf~~i~~~l~~~~ 121 (238)
+++...+.+.+.+..
T Consensus 92 ~~L~~~i~~~~~~~~ 106 (276)
T TIGR03596 92 KKIIKAAKKLLKEKN 106 (276)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999988876543
No 246
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.86 E-value=0.00031 Score=64.24 Aligned_cols=97 Identities=16% Similarity=0.121 Sum_probs=65.9
Q ss_pred CCCcccccC----CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHH----HHHHH
Q psy14042 19 EQYEKLTSS----DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDA----KNLAA 89 (238)
Q Consensus 19 e~~~~l~~~----~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~----~~~~~ 89 (238)
|.|..+... .+|.+++|.|. ..-+-++ ......+.+ ..+++++|.||-|+.+......++. +....
T Consensus 247 E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD-~~ia~~i~~----~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~ 321 (444)
T COG1160 247 EKYSVARTLKAIERADVVLLVIDATEGISEQD-LRIAGLIEE----AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLP 321 (444)
T ss_pred EEEeehhhHhHHhhcCEEEEEEECCCCchHHH-HHHHHHHHH----cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhc
Confidence 555544443 89999999999 4333332 333444433 7899999999999876543333333 33233
Q ss_pred hC-CCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 90 SF-KVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 90 ~~-~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
.. ..+.+.+||++|.|++.+|..+.......
T Consensus 322 ~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 322 FLDFAPIVFISALTGQGLDKLFEAIKEIYECA 353 (444)
T ss_pred cccCCeEEEEEecCCCChHHHHHHHHHHHHHh
Confidence 33 35799999999999999999998765544
No 247
>KOG1145|consensus
Probab=97.86 E-value=0.00052 Score=64.05 Aligned_cols=161 Identities=19% Similarity=0.211 Sum_probs=96.7
Q ss_pred EEEEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc
Q psy14042 12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS 80 (238)
Q Consensus 12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~ 80 (238)
=++.+.| .-|.+|+.. -+|.++||... | +++.+.++ +....+.|+|+..||||.+.. .
T Consensus 201 ~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIk--------hAk~A~VpiVvAinKiDkp~a---~ 269 (683)
T KOG1145|consen 201 KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIK--------HAKSANVPIVVAINKIDKPGA---N 269 (683)
T ss_pred CEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHH--------HHHhcCCCEEEEEeccCCCCC---C
Confidence 3456788 667777655 68999999877 4 55555544 222389999999999997632 2
Q ss_pred HHHHHH-HH------HhCC--CeEEEEccCCCCCHHHHHHHHHHHHHhhhcccccCCCCCCCcCccCcceeecceEEeec
Q psy14042 81 SQDAKN-LA------ASFK--VKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQTGGAQAAAPWKSNTTLVRASAVIVGS 151 (238)
Q Consensus 81 ~~~~~~-~~------~~~~--~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (238)
++...+ +. +.+| .+.+++||++|.|++.|-+.+.-+..-.. .+..+.. .-.++++..+
T Consensus 270 pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~md--LkA~p~g-----------~~eg~VIES~ 336 (683)
T KOG1145|consen 270 PEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEVMD--LKADPKG-----------PAEGWVIESS 336 (683)
T ss_pred HHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHHhh--cccCCCC-----------CceEEEEEee
Confidence 333322 22 3333 56899999999999999888774432211 1111111 3345555544
Q ss_pred ccCceeeecccceeeeEEEEeCCCCCeEEEEeeCceEE-EEeCCCCeeee
Q psy14042 152 VDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVH-LYDYEGNFMNK 200 (238)
Q Consensus 152 ~~g~rv~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~d~~g~~~~~ 200 (238)
.+..| |+ +. +.+.+----..+.++.-|..=+.|+ ++|.+|..+.+
T Consensus 337 vdkg~--G~-~a-T~iVkrGTLkKG~vlV~G~~w~KVr~l~D~nGk~i~~ 382 (683)
T KOG1145|consen 337 VDKGR--GP-VA-TVIVKRGTLKKGSVLVAGKSWCKVRALFDHNGKPIDE 382 (683)
T ss_pred ecCCc--cc-ee-EEEEeccccccccEEEEechhhhhhhhhhcCCCCccc
Confidence 44332 21 11 1233223344567777777777765 57888887754
No 248
>PRK09866 hypothetical protein; Provisional
Probab=97.85 E-value=0.00012 Score=69.93 Aligned_cols=85 Identities=14% Similarity=0.093 Sum_probs=57.2
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHH----hCC---CeEEEEc
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAA----SFK---VKFIEVS 99 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~----~~~---~~~~evS 99 (238)
++|++++|.|. ...+..+ ....+.+++.. ...|+++|.||+|+.....-..+....+.+ ..+ ..+|++|
T Consensus 258 eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~--K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVS 334 (741)
T PRK09866 258 RASAVLAVLDYTQLKSISD-EEVREAILAVG--QSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVS 334 (741)
T ss_pred hCCEEEEEEeCCCCCChhH-HHHHHHHHhcC--CCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 89999999999 4334333 33445554421 236999999999986433322344444332 222 3589999
Q ss_pred cCCCCCHHHHHHHHHH
Q psy14042 100 VGIHHNVDELLVGILN 115 (238)
Q Consensus 100 A~t~~gv~elf~~i~~ 115 (238)
|+.|.|+++++..|..
T Consensus 335 AlkG~nid~LLdeI~~ 350 (741)
T PRK09866 335 SMWGYLANRARHELAN 350 (741)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 9999999999999884
No 249
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.85 E-value=6e-05 Score=56.31 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=51.9
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV 106 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv 106 (238)
.++++++||+. ++.+++.+ |...+.... ..+.|.++++||.|+.....+..++... |+++|++++.|+
T Consensus 46 s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~~~~~~~~~~~--------~~~~s~~~~~~~ 114 (124)
T smart00010 46 SFDVVLQCWRVDDRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEERQVATEEGLE--------FAETSAKTPEEG 114 (124)
T ss_pred CCCEEEEEEEccCHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHhhCcCCHHHHHH--------HHHHhCCCcchh
Confidence 78999999999 89999866 877776533 3678999999999996544555444443 344799999988
Q ss_pred H
Q psy14042 107 D 107 (238)
Q Consensus 107 ~ 107 (238)
.
T Consensus 115 ~ 115 (124)
T smart00010 115 E 115 (124)
T ss_pred h
Confidence 4
No 250
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.82 E-value=6.4e-05 Score=62.43 Aligned_cols=56 Identities=29% Similarity=0.293 Sum_probs=41.3
Q ss_pred CCCEEEEEEeccCCCcccccHHHHHHHHHhC--CCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 61 TRPAIIVANKIDLARARAVSSQDAKNLAASF--KVKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 61 ~~piilVgNK~DL~~~~~v~~~~~~~~~~~~--~~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
..|.++++||+|+.........+.....++. ..+++++||+++.|++++|+++.+.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999754332233344434433 4789999999999999999999864
No 251
>KOG0705|consensus
Probab=97.79 E-value=0.00014 Score=67.69 Aligned_cols=124 Identities=15% Similarity=0.204 Sum_probs=98.1
Q ss_pred ccEEEECCeEEEEEEEeCCCcccccC--CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC--Cc
Q psy14042 2 NQSLQGHSGKVRAIIWNEQYEKLTSS--DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA--RA 76 (238)
Q Consensus 2 ~k~i~~~~~~v~l~iWDe~~~~l~~~--~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~--~~ 76 (238)
.|.+.++++...+-|.||--..-... .+|++|+||.+ |..+|+.+..+.-++..+.....+|.++|+.+.-.. ..
T Consensus 67 kkE~vv~gqs~lLlirdeg~~~~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~ 146 (749)
T KOG0705|consen 67 KKEVVVDGQSHLLLIRDEGGHPDAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRP 146 (749)
T ss_pred eeeEEeeccceEeeeecccCCchhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccc
Confidence 57788899999999999544222222 89999999999 999999999988888777656789999999986654 34
Q ss_pred ccccHHHHHHHHHh-CCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcccc
Q psy14042 77 RAVSSQDAKNLAAS-FKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQ 125 (238)
Q Consensus 77 ~~v~~~~~~~~~~~-~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~~ 125 (238)
+.+...++++++.. ..+.||+++|.+|-+++..|+.++..+....+..+
T Consensus 147 rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~~~~qq 196 (749)
T KOG0705|consen 147 RVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIVQLRKYQQ 196 (749)
T ss_pred cccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 55556666666555 56889999999999999999999988877755443
No 252
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.77 E-value=0.00014 Score=68.88 Aligned_cols=63 Identities=13% Similarity=0.022 Sum_probs=42.1
Q ss_pred ECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 7 GHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 7 ~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
++...+++.+|| +.|...... .+|++|+|+|. +.- ....+.++..... .++|+++++||+|+.
T Consensus 74 ~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~----~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 74 FPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGV-EPQTRKLMEVCRL----RDTPIFTFINKLDRD 144 (526)
T ss_pred EEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCC-CHHHHHHHHHHHh----cCCCEEEEEECCccc
Confidence 333457899999 556543222 89999999999 432 2223344443333 679999999999985
No 253
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=97.74 E-value=0.00023 Score=65.23 Aligned_cols=104 Identities=14% Similarity=0.124 Sum_probs=68.1
Q ss_pred EEEECCeEEEEEEEe-CCCc----cc---------ccC-CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEE
Q psy14042 4 SLQGHSGKVRAIIWN-EQYE----KL---------TSS-DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIV 67 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD-e~~~----~l---------~~~-~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilV 67 (238)
.+.++| +.+.+.| .-.| .+ ... +||.+++|+|. ...+-.+.. .+. . ...+.|+++|
T Consensus 259 ~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~-~~~-~----~~~~~~~i~v 330 (454)
T COG0486 259 DINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLA-LIE-L----LPKKKPIIVV 330 (454)
T ss_pred EEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHH-HHH-h----cccCCCEEEE
Confidence 467777 6677888 1111 11 111 89999999999 431222111 111 1 1278999999
Q ss_pred EEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 68 ANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 68 gNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
.||+||..+..... .....+.+++.+||++|+|++.+.+.|.+.+...
T Consensus 331 ~NK~DL~~~~~~~~-----~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 331 LNKADLVSKIELES-----EKLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred Eechhcccccccch-----hhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 99999976543211 1122355789999999999999999998877655
No 254
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.74 E-value=0.00015 Score=63.32 Aligned_cols=84 Identities=15% Similarity=0.129 Sum_probs=57.1
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV 106 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv 106 (238)
.+|++|+|.|. ++.+..+ .++.++ . .+.|+++|.||+||...... .... ...++.+.+++.+||+++.|+
T Consensus 24 ~aDvIL~VvDar~p~~~~~--~~l~~~---~--~~kp~iiVlNK~DL~~~~~~-~~~~-~~~~~~~~~vi~vSa~~~~gi 94 (287)
T PRK09563 24 LVDVVIEVLDARIPLSSEN--PMIDKI---I--GNKPRLLILNKSDLADPEVT-KKWI-EYFEEQGIKALAINAKKGQGV 94 (287)
T ss_pred hCCEEEEEEECCCCCCCCC--hhHHHH---h--CCCCEEEEEEchhcCCHHHH-HHHH-HHHHHcCCeEEEEECCCcccH
Confidence 89999999999 5433221 122222 2 36899999999999643211 1122 222344678899999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy14042 107 DELLVGILNQIRLK 120 (238)
Q Consensus 107 ~elf~~i~~~l~~~ 120 (238)
+++...+.+.+.+.
T Consensus 95 ~~L~~~l~~~l~~~ 108 (287)
T PRK09563 95 KKILKAAKKLLKEK 108 (287)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887654
No 255
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.72 E-value=0.0004 Score=60.70 Aligned_cols=92 Identities=17% Similarity=0.130 Sum_probs=66.2
Q ss_pred CCCcccccC---CceEEEEEEEC-C-cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC
Q psy14042 19 EQYEKLTSS---DETGLIIVWML-Y-KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV 93 (238)
Q Consensus 19 e~~~~l~~~---~ad~~IlV~dv-d-~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~ 93 (238)
+|-..|... +.|-++||+.. + .-+..-+..++--+.. .++.-+||.||+||.+......++........|.
T Consensus 67 ~Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~----~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy 142 (301)
T COG1162 67 PRKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA----GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGY 142 (301)
T ss_pred cccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH----cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCe
Confidence 444455544 66777777766 4 4555655555554433 7788888899999987655444556667778999
Q ss_pred eEEEEccCCCCCHHHHHHHHH
Q psy14042 94 KFIEVSVGIHHNVDELLVGIL 114 (238)
Q Consensus 94 ~~~evSA~t~~gv~elf~~i~ 114 (238)
+++.+|+++++|++++...+.
T Consensus 143 ~v~~~s~~~~~~~~~l~~~l~ 163 (301)
T COG1162 143 PVLFVSAKNGDGLEELAELLA 163 (301)
T ss_pred eEEEecCcCcccHHHHHHHhc
Confidence 999999999999999988776
No 256
>KOG0077|consensus
Probab=97.72 E-value=3.3e-05 Score=61.56 Aligned_cols=107 Identities=14% Similarity=0.126 Sum_probs=76.4
Q ss_pred EEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042 5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA 76 (238)
Q Consensus 5 i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~ 76 (238)
+.+.| ++++..| ..-|..|.- .+|++++.+|. |.+.|...+.-++-+.......+.|+++.+||+|++..
T Consensus 59 l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 59 LSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred heecC--ceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc
Confidence 44544 7888889 333445544 89999999999 99999999888888776655689999999999999754
Q ss_pred ccccHHHHHHHH---HhC-----------C---CeEEEEccCCCCCHHHHHHHHHH
Q psy14042 77 RAVSSQDAKNLA---ASF-----------K---VKFIEVSVGIHHNVDELLVGILN 115 (238)
Q Consensus 77 ~~v~~~~~~~~~---~~~-----------~---~~~~evSA~t~~gv~elf~~i~~ 115 (238)
- ++++.+... ... + ...|.||...+.|.-+.|.++..
T Consensus 137 ~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 137 A--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred c--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhh
Confidence 3 333332211 110 1 34788898888887777777654
No 257
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.71 E-value=0.00012 Score=68.00 Aligned_cols=103 Identities=16% Similarity=0.221 Sum_probs=64.2
Q ss_pred EEEEEe----CCC-cccccC--CceEEEEEEECCcc-hHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc--HH
Q psy14042 13 RAIIWN----EQY-EKLTSS--DETGLIIVWMLYKP-SYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS--SQ 82 (238)
Q Consensus 13 ~l~iWD----e~~-~~l~~~--~ad~~IlV~dvd~~-s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~--~~ 82 (238)
.+.+.| ++| +.+... .+|++++|.|.+.. .-...+..+..+.. . .-.|+|+|.||+|+....... .+
T Consensus 118 ~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~-l--gi~~iIVvlNKiDlv~~~~~~~~~~ 194 (460)
T PTZ00327 118 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEI-M--KLKHIIILQNKIDLVKEAQAQDQYE 194 (460)
T ss_pred eEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHH-c--CCCcEEEEEecccccCHHHHHHHHH
Confidence 578899 555 333333 89999999999432 11111222222221 1 234689999999997533221 12
Q ss_pred HHHHHHHh---CCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 83 DAKNLAAS---FKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 83 ~~~~~~~~---~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
+.+.+.+. .+.+++.+||++|.|++.|++.|.+.+.
T Consensus 195 ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 195 EIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 33333332 3578999999999999999998886543
No 258
>PRK13351 elongation factor G; Reviewed
Probab=97.67 E-value=0.00023 Score=69.43 Aligned_cols=61 Identities=13% Similarity=0.076 Sum_probs=44.2
Q ss_pred eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
..+++++|| .+|...+.. .+|++|+|+|. +...++....| ..+.. .++|+++|+||+|+..
T Consensus 71 ~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~----~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 71 DNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR----YGIPRLIFINKMDRVG 139 (687)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh----cCCCEEEEEECCCCCC
Confidence 357899999 456544433 89999999999 66666655444 33433 5789999999999853
No 259
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.64 E-value=0.00028 Score=64.48 Aligned_cols=82 Identities=18% Similarity=0.189 Sum_probs=57.5
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC-eEEEEccCCCCCH
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV-KFIEVSVGIHHNV 106 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv 106 (238)
.||++|||.|....--..-+.....|++ .+.|++||.||+|-.. .+......-.+|+ +.+.+||..|.|+
T Consensus 83 eADvilfvVD~~~Git~~D~~ia~~Lr~----~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg~Gi 153 (444)
T COG1160 83 EADVILFVVDGREGITPADEEIAKILRR----SKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHGRGI 153 (444)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHh----cCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhccCH
Confidence 8999999999933222222333333332 6799999999999652 1222223334565 5899999999999
Q ss_pred HHHHHHHHHHHH
Q psy14042 107 DELLVGILNQIR 118 (238)
Q Consensus 107 ~elf~~i~~~l~ 118 (238)
.+|.+.+++.++
T Consensus 154 ~dLld~v~~~l~ 165 (444)
T COG1160 154 GDLLDAVLELLP 165 (444)
T ss_pred HHHHHHHHhhcC
Confidence 999999999874
No 260
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.63 E-value=0.00044 Score=61.31 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=76.8
Q ss_pred eEEEEEEEe----CCCcccccC---CceEEEEEEEC-Cc----------chHHHHHHHHHHHHHhcCCCCCCEEEEEEec
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YK----------PSYHRVEQDVIRLHEEGYLRTRPAIIVANKI 71 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~----------~s~~~~~~~~~~l~~~~~~~~~piilVgNK~ 71 (238)
..+.+.+|| ...|..|.. +++++|+|.|+ +- ..+......+..+.......+.|++|++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 358899999 566777766 99999999999 52 4566666666666654434789999999999
Q ss_pred cCCCc---------------c-cccHHHHHHHHH--------h--CCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 72 DLARA---------------R-AVSSQDAKNLAA--------S--FKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 72 DL~~~---------------~-~v~~~~~~~~~~--------~--~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
|+-.+ . .-..+.+..+.. . ..+-...++|....++..+|..+...+....
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 97211 0 112233322221 1 1234567899999999999999988876543
No 261
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.61 E-value=0.00019 Score=65.80 Aligned_cols=96 Identities=21% Similarity=0.207 Sum_probs=57.4
Q ss_pred EEEEEEEe----CCCc-ccccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc-cc--
Q psy14042 11 KVRAIIWN----EQYE-KLTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA-VS-- 80 (238)
Q Consensus 11 ~v~l~iWD----e~~~-~l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~-v~-- 80 (238)
..++.++| ++|. .+... .+|++|+|.|.........+.....+... ...++++|.||+|+..... ..
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~---~~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL---GIRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc---CCCcEEEEEEecccccchHHHHHH
Confidence 35788999 5563 33333 99999999998432222222111222221 2346899999999964221 11
Q ss_pred -HHHHHHHHHhCC---CeEEEEccCCCCCHHHH
Q psy14042 81 -SQDAKNLAASFK---VKFIEVSVGIHHNVDEL 109 (238)
Q Consensus 81 -~~~~~~~~~~~~---~~~~evSA~t~~gv~el 109 (238)
.++...+.+..+ ++++++||++|.|++++
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 123333444444 47999999999999863
No 262
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.59 E-value=0.0011 Score=59.55 Aligned_cols=115 Identities=11% Similarity=0.061 Sum_probs=77.6
Q ss_pred EEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-C----------cchHHHHHHHHHHHHHhcCCCCCCEEE
Q psy14042 5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-Y----------KPSYHRVEQDVIRLHEEGYLRTRPAII 66 (238)
Q Consensus 5 i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d----------~~s~~~~~~~~~~l~~~~~~~~~piil 66 (238)
+.+++ +.+.+|| ..+|+.|.. +++++|+|.|+ + ...+......+..+.......+.|++|
T Consensus 179 f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil 256 (342)
T smart00275 179 FIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIIL 256 (342)
T ss_pred EEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEE
Confidence 34444 6789999 566788866 99999999999 5 245666666777766544347899999
Q ss_pred EEEeccCCCc---------------ccccHHHHHHHHH-----h------CCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 67 VANKIDLARA---------------RAVSSQDAKNLAA-----S------FKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 67 VgNK~DL~~~---------------~~v~~~~~~~~~~-----~------~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
++||.|+..+ ..-..+.+..+.. . ..+-.+.++|.+-.++..+|..+...+...
T Consensus 257 ~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 257 FLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred EEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 9999998321 0011222222211 1 123457788999999999999988877654
Q ss_pred h
Q psy14042 121 R 121 (238)
Q Consensus 121 ~ 121 (238)
.
T Consensus 337 ~ 337 (342)
T smart00275 337 N 337 (342)
T ss_pred H
Confidence 3
No 263
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.57 E-value=0.00035 Score=62.03 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=40.9
Q ss_pred CCCEEEEEEeccCCCcccccHHHHHHHHHhC-CCeEEEEccCCCCCHHHHHH-HHHHHHHhhh
Q psy14042 61 TRPAIIVANKIDLARARAVSSQDAKNLAASF-KVKFIEVSVGIHHNVDELLV-GILNQIRLKR 121 (238)
Q Consensus 61 ~~piilVgNK~DL~~~~~v~~~~~~~~~~~~-~~~~~evSA~t~~gv~elf~-~i~~~l~~~~ 121 (238)
..|+|+|+||+|+...... ...+.... ..+++.+||+.+.+++++.+ .+++.+++..
T Consensus 214 ~KPvI~VlNK~Dl~~~~~~----~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~ 272 (318)
T cd01899 214 SKPMVIAANKADIPDAENN----ISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDS 272 (318)
T ss_pred CCcEEEEEEHHHccChHHH----HHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCC
Confidence 4699999999998543221 11222233 46799999999999999997 5887775543
No 264
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.56 E-value=0.00016 Score=67.56 Aligned_cols=97 Identities=20% Similarity=0.200 Sum_probs=57.1
Q ss_pred EEEEEEEe----CCCc-ccccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc-ccH-
Q psy14042 11 KVRAIIWN----EQYE-KLTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA-VSS- 81 (238)
Q Consensus 11 ~v~l~iWD----e~~~-~l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~-v~~- 81 (238)
..++.++| ++|. .+... .+|++++|.|.+.......+.-...+.. . ...|+|+|.||+|+..... ...
T Consensus 106 ~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~-l--g~~~iIvvvNKiD~~~~~~~~~~~ 182 (474)
T PRK05124 106 KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATL-L--GIKHLVVAVNKMDLVDYSEEVFER 182 (474)
T ss_pred CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHH-h--CCCceEEEEEeeccccchhHHHHH
Confidence 45788999 5553 23332 8999999999943221111111111111 1 2357899999999974222 111
Q ss_pred --HHHHHHHHhC----CCeEEEEccCCCCCHHHHH
Q psy14042 82 --QDAKNLAASF----KVKFIEVSVGIHHNVDELL 110 (238)
Q Consensus 82 --~~~~~~~~~~----~~~~~evSA~t~~gv~elf 110 (238)
++...+.+.. ..+++++||++|+|++++-
T Consensus 183 i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 183 IREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 1233333333 3679999999999998753
No 265
>KOG1423|consensus
Probab=97.55 E-value=0.00021 Score=62.40 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=56.5
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc-------------cccH--HHH-HHHHH-
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR-------------AVSS--QDA-KNLAA- 89 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~-------------~v~~--~~~-~~~~~- 89 (238)
.||++++|+|+ +....-+ ...+..+..| ..+|-+||.||+|....+ ++.. .+. +++..
T Consensus 155 ~AD~vvVv~Das~tr~~l~-p~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~ 230 (379)
T KOG1423|consen 155 NADCVVVVVDASATRTPLH-PRVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDV 230 (379)
T ss_pred hCCEEEEEEeccCCcCccC-hHHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccC
Confidence 89999999999 5221111 2334444545 579999999999975332 1111 111 11111
Q ss_pred --------hCCC----eEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 90 --------SFKV----KFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 90 --------~~~~----~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
..|+ .+|.+||++|+||+++.+.|..++...
T Consensus 231 p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 231 PSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred CcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 0112 289999999999999999999766443
No 266
>PRK13768 GTPase; Provisional
Probab=97.49 E-value=0.00057 Score=58.70 Aligned_cols=87 Identities=17% Similarity=0.092 Sum_probs=55.5
Q ss_pred ceEEEEEEEC-CcchHHHH--HHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH--HHHH------------------
Q psy14042 29 ETGLIIVWML-YKPSYHRV--EQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS--QDAK------------------ 85 (238)
Q Consensus 29 ad~~IlV~dv-d~~s~~~~--~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~~------------------ 85 (238)
++++++|+|. ......+. ..|+....... .+.|+++|.||+|+....+... ....
T Consensus 129 ~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~--~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 206 (253)
T PRK13768 129 KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR--LGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGL 206 (253)
T ss_pred CeEEEEEechHHhCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHH
Confidence 7899999998 43323222 22333222222 5799999999999965433211 0001
Q ss_pred ------HHHHhCC--CeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 86 ------NLAASFK--VKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 86 ------~~~~~~~--~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
+..+..+ .+++++||+++.|++++...|.+.+
T Consensus 207 ~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 207 LSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred HHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 1122333 5789999999999999999998765
No 267
>CHL00071 tufA elongation factor Tu
Probab=97.47 E-value=0.00057 Score=62.70 Aligned_cols=92 Identities=11% Similarity=0.198 Sum_probs=58.3
Q ss_pred EEEEEEEe----CCC-cccccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCccccc--
Q psy14042 11 KVRAIIWN----EQY-EKLTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARAVS-- 80 (238)
Q Consensus 11 ~v~l~iWD----e~~-~~l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~v~-- 80 (238)
..++.+-| .+| ..+... .+|++++|.|.........+..+..+.. .++| +|++.||.|+....+..
T Consensus 74 ~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~ 149 (409)
T CHL00071 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLEL 149 (409)
T ss_pred CeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHH
Confidence 34566778 233 223222 8999999999954433444444444443 4678 77899999997543322
Q ss_pred -HHHHHHHHHhCC-----CeEEEEccCCCCCH
Q psy14042 81 -SQDAKNLAASFK-----VKFIEVSVGIHHNV 106 (238)
Q Consensus 81 -~~~~~~~~~~~~-----~~~~evSA~t~~gv 106 (238)
.+++..+.+..+ ++++.+||.+|+|+
T Consensus 150 ~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 150 VELEVRELLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence 235555555543 68999999999743
No 268
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.47 E-value=0.00057 Score=64.71 Aligned_cols=65 Identities=17% Similarity=0.095 Sum_probs=42.5
Q ss_pred EECCeEEEEEEEe----CCCcccc-cC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 6 QGHSGKVRAIIWN----EQYEKLT-SS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 6 ~~~~~~v~l~iWD----e~~~~l~-~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
.++.+.+++.+|| +.|.... .. .+|++|+|+|...........+...+.. .+.|+++++||+|+.
T Consensus 74 ~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~----~~~PiivviNKiD~~ 145 (527)
T TIGR00503 74 QFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL----RDTPIFTFMNKLDRD 145 (527)
T ss_pred EEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh----cCCCEEEEEECcccc
Confidence 3444568899999 4554322 22 8999999999932222223444443332 578999999999984
No 269
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.46 E-value=0.00073 Score=55.59 Aligned_cols=89 Identities=11% Similarity=0.031 Sum_probs=57.0
Q ss_pred CceEEEEEEECCcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccCCCccc-----------ccHHHHHHH----HHhC
Q psy14042 28 DETGLIIVWMLYKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDLARARA-----------VSSQDAKNL----AASF 91 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~-----------v~~~~~~~~----~~~~ 91 (238)
++|.++++-+ .+|... ..|+..+++ .+.|+++|+||+|+..... ...++.++. .+..
T Consensus 80 ~~d~~l~v~~---~~~~~~d~~~~~~l~~----~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISS---TRFSSNDVKLAKAIQC----MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeC---CCCCHHHHHHHHHHHH----hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 6787777632 234444 456666655 3589999999999842111 111122222 2222
Q ss_pred C---CeEEEEccC--CCCCHHHHHHHHHHHHHhhhcc
Q psy14042 92 K---VKFIEVSVG--IHHNVDELLVGILNQIRLKRSL 123 (238)
Q Consensus 92 ~---~~~~evSA~--t~~gv~elf~~i~~~l~~~~~~ 123 (238)
+ .++|.+|+. .++++..+...+...+.+.++.
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 2 358999998 6799999999999999876643
No 270
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.43 E-value=0.0012 Score=56.09 Aligned_cols=108 Identities=13% Similarity=0.130 Sum_probs=68.7
Q ss_pred eEEEEEEEe----CCCcccc----cC----CceEEEEEEEC-CcchH---HHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 10 GKVRAIIWN----EQYEKLT----SS----DETGLIIVWML-YKPSY---HRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~----~~----~ad~~IlV~dv-d~~s~---~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
..+.++||| ..|.... .. ++.++|+|+|+ +.+-. ..+...+..+.++. +++.+.+...|.|+
T Consensus 46 ~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s--p~~~v~vfiHK~D~ 123 (232)
T PF04670_consen 46 SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS--PNIKVFVFIHKMDL 123 (232)
T ss_dssp TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHS--TT-EEEEEEE-CCC
T ss_pred CCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhC--CCCeEEEEEeeccc
Confidence 346899999 2232221 11 99999999999 44433 33445566666665 78999999999999
Q ss_pred CCccc--ccH----HHHHHHHHhCC---CeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 74 ARARA--VSS----QDAKNLAASFK---VKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 74 ~~~~~--v~~----~~~~~~~~~~~---~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
..+.. ... +.+...+...+ +.|+.||.-. +.+-+++..+++.+..+
T Consensus 124 l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 124 LSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLIPN 178 (232)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTSTT
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHccc
Confidence 64321 111 22333444555 7899999998 68999999999776543
No 271
>PRK12740 elongation factor G; Reviewed
Probab=97.42 E-value=0.00062 Score=66.27 Aligned_cols=59 Identities=15% Similarity=0.062 Sum_probs=40.5
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
.+.+.+|| .+|...+.. .+|++|+|+|. +.........| ..+.. .+.|+++|+||+|+.
T Consensus 59 ~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~----~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 59 GHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK----YGVPRIIFVNKMDRA 125 (668)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH----cCCCEEEEEECCCCC
Confidence 47889999 334332222 89999999999 55555544333 33333 578999999999985
No 272
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.41 E-value=0.00061 Score=59.01 Aligned_cols=66 Identities=15% Similarity=0.044 Sum_probs=43.3
Q ss_pred EECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042 6 QGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA 76 (238)
Q Consensus 6 ~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~ 76 (238)
.+..+.+++++|| ++|...... .+|++|+|+|. +... .....+...+.. .++|+++++||+|+...
T Consensus 65 ~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~----~~~P~iivvNK~D~~~a 138 (267)
T cd04169 65 QFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL----RGIPIITFINKLDREGR 138 (267)
T ss_pred EEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh----cCCCEEEEEECCccCCC
Confidence 3444568899999 555542222 89999999999 4322 222333333322 57899999999998653
No 273
>PRK00049 elongation factor Tu; Reviewed
Probab=97.38 E-value=0.0013 Score=60.04 Aligned_cols=102 Identities=15% Similarity=0.199 Sum_probs=62.8
Q ss_pred EEEEEEEe----CCC-cccccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEE-EEEEeccCCCccccc--
Q psy14042 11 KVRAIIWN----EQY-EKLTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAI-IVANKIDLARARAVS-- 80 (238)
Q Consensus 11 ~v~l~iWD----e~~-~~l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~pii-lVgNK~DL~~~~~v~-- 80 (238)
..++.+.| ++| ..+... .+|++++|.|.........+..+..+.. .+.|.+ ++.||.|+....+..
T Consensus 74 ~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~ 149 (396)
T PRK00049 74 KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLEL 149 (396)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHH
Confidence 34567788 333 223222 8999999999944333444444544444 468876 589999997432221
Q ss_pred -HHHHHHHHHhC-----CCeEEEEccCCCC----------CHHHHHHHHHHH
Q psy14042 81 -SQDAKNLAASF-----KVKFIEVSVGIHH----------NVDELLVGILNQ 116 (238)
Q Consensus 81 -~~~~~~~~~~~-----~~~~~evSA~t~~----------gv~elf~~i~~~ 116 (238)
..++..+.+.. .++++.+||+++. ++..+++.|...
T Consensus 150 ~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 150 VEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred HHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 22444444443 3679999999875 456666666643
No 274
>PLN03126 Elongation factor Tu; Provisional
Probab=97.34 E-value=0.00063 Score=63.65 Aligned_cols=92 Identities=13% Similarity=0.186 Sum_probs=58.8
Q ss_pred eEEEEEEEe----CCCc-ccccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCccccc-
Q psy14042 10 GKVRAIIWN----EQYE-KLTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARAVS- 80 (238)
Q Consensus 10 ~~v~l~iWD----e~~~-~l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~v~- 80 (238)
...++.++| ++|- .+... .+|++++|.|.........+.++..+.. .++| ++++.||+|+....+..
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~ 217 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLE 217 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHH
Confidence 345778999 4453 23222 8899999999844333334444444444 4678 77899999997533221
Q ss_pred --HHHHHHHHHhC-----CCeEEEEccCCCCC
Q psy14042 81 --SQDAKNLAASF-----KVKFIEVSVGIHHN 105 (238)
Q Consensus 81 --~~~~~~~~~~~-----~~~~~evSA~t~~g 105 (238)
.+++..+.+.. .++++.+||.+|.+
T Consensus 218 ~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 218 LVELEVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 22455555553 46799999999854
No 275
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.29 E-value=0.00056 Score=52.26 Aligned_cols=77 Identities=21% Similarity=0.128 Sum_probs=56.7
Q ss_pred CceEEEEEEEC-Ccch-HHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC-eEEEEccCCCC
Q psy14042 28 DETGLIIVWML-YKPS-YHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV-KFIEVSVGIHH 104 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s-~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~ 104 (238)
++|++++|... ++.| |.- . +...-.+|+|-|.+|.||.++..+ +..+++..+.|. ++|++|+.++.
T Consensus 64 dadvi~~v~~and~~s~f~p------~---f~~~~~k~vIgvVTK~DLaed~dI--~~~~~~L~eaGa~~IF~~s~~d~~ 132 (148)
T COG4917 64 DADVIIYVHAANDPESRFPP------G---FLDIGVKKVIGVVTKADLAEDADI--SLVKRWLREAGAEPIFETSAVDNQ 132 (148)
T ss_pred ccceeeeeecccCccccCCc------c---cccccccceEEEEecccccchHhH--HHHHHHHHHcCCcceEEEeccCcc
Confidence 99999999988 6533 220 0 222346779999999999864443 345666667775 69999999999
Q ss_pred CHHHHHHHHHH
Q psy14042 105 NVDELLVGILN 115 (238)
Q Consensus 105 gv~elf~~i~~ 115 (238)
|+++++..|..
T Consensus 133 gv~~l~~~L~~ 143 (148)
T COG4917 133 GVEELVDYLAS 143 (148)
T ss_pred cHHHHHHHHHh
Confidence 99999998873
No 276
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.26 E-value=0.00078 Score=65.18 Aligned_cols=94 Identities=23% Similarity=0.248 Sum_probs=56.3
Q ss_pred EEEEEEe----CCCcc-cccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc-cccc---
Q psy14042 12 VRAIIWN----EQYEK-LTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA-RAVS--- 80 (238)
Q Consensus 12 v~l~iWD----e~~~~-l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~-~~v~--- 80 (238)
.++.++| ++|.. +... .+|++++|.|.+.......+.....+... ...|+++|.||+|+... .+..
T Consensus 104 ~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~---~~~~iivvvNK~D~~~~~~~~~~~i 180 (632)
T PRK05506 104 RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL---GIRHVVLAVNKMDLVDYDQEVFDEI 180 (632)
T ss_pred ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh---CCCeEEEEEEecccccchhHHHHHH
Confidence 4677999 44432 2222 89999999999433222222222222221 33578999999999642 1111
Q ss_pred HHHHHHHHHhCC---CeEEEEccCCCCCHHH
Q psy14042 81 SQDAKNLAASFK---VKFIEVSVGIHHNVDE 108 (238)
Q Consensus 81 ~~~~~~~~~~~~---~~~~evSA~t~~gv~e 108 (238)
..+...+.+..+ .+++++||++|.|+++
T Consensus 181 ~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 181 VADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 123344445555 4699999999999984
No 277
>PLN03127 Elongation factor Tu; Provisional
Probab=97.24 E-value=0.0025 Score=59.25 Aligned_cols=103 Identities=15% Similarity=0.204 Sum_probs=61.4
Q ss_pred EEEEEEEe----CCCc-ccccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCcccccH-
Q psy14042 11 KVRAIIWN----EQYE-KLTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARAVSS- 81 (238)
Q Consensus 11 ~v~l~iWD----e~~~-~l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~v~~- 81 (238)
..++.+.| ++|- .+... .+|++++|.|.+.......+..+..+.. .++| +|++.||+|+....+...
T Consensus 123 ~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~----~gip~iIvviNKiDlv~~~~~~~~ 198 (447)
T PLN03127 123 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ----VGVPSLVVFLNKVDVVDDEELLEL 198 (447)
T ss_pred CeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEEEeeccCCHHHHHHH
Confidence 34677889 4442 22222 8999999999943333333444444443 5688 578899999975333221
Q ss_pred --HHHHHHHHhC-----CCeEEEEccC---CCCC-------HHHHHHHHHHHH
Q psy14042 82 --QDAKNLAASF-----KVKFIEVSVG---IHHN-------VDELLVGILNQI 117 (238)
Q Consensus 82 --~~~~~~~~~~-----~~~~~evSA~---t~~g-------v~elf~~i~~~l 117 (238)
.+...+.+.. .++++.+||. +|.| +.++++.+.+.+
T Consensus 199 i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 199 VEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred HHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 2333444332 3678888876 4555 667777766554
No 278
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.0015 Score=62.53 Aligned_cols=87 Identities=21% Similarity=0.201 Sum_probs=64.4
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHH
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVD 107 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~ 107 (238)
+.|++|-|.|. ..++.--..--++.+ -+.|++++.|++|...++.+.- +.+++.+..|+|++++||++|.|++
T Consensus 81 ~~D~ivnVvDA--tnLeRnLyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 81 KPDLIVNVVDA--TNLERNLYLTLQLLE----LGIPMILALNMIDEAKKRGIRI-DIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred CCCEEEEEccc--chHHHHHHHHHHHHH----cCCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCCCEEEEEeecCCCHH
Confidence 67988888776 222222222233433 5789999999999977655543 5678889999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q psy14042 108 ELLVGILNQIRLKR 121 (238)
Q Consensus 108 elf~~i~~~l~~~~ 121 (238)
++...+.+....+.
T Consensus 154 ~l~~~i~~~~~~~~ 167 (653)
T COG0370 154 ELKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHHhccccc
Confidence 99999987655443
No 279
>KOG1490|consensus
Probab=97.10 E-value=0.00099 Score=61.68 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=67.6
Q ss_pred eEEEEEEECCc---chHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHH---HHHHHHhCCCeEEEEccCCC
Q psy14042 30 TGLIIVWMLYK---PSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQD---AKNLAASFKVKFIEVSVGIH 103 (238)
Q Consensus 30 d~~IlV~dvd~---~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~---~~~~~~~~~~~~~evSA~t~ 103 (238)
.+++++.|++. -|...--.++..|+-.- .+.|.|+|.||+|+-....++++. ...+...-+++++++|+.+.
T Consensus 249 aaVLYfmDLSe~CGySva~QvkLfhsIKpLF--aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~e 326 (620)
T KOG1490|consen 249 SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF--ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQE 326 (620)
T ss_pred hhheeeeechhhhCCCHHHHHHHHHHhHHHh--cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccch
Confidence 46777788843 23333333444444333 789999999999997766666543 33444555699999999999
Q ss_pred CCHHHHHHHHHHHHHhhhcccc
Q psy14042 104 HNVDELLVGILNQIRLKRSLVQ 125 (238)
Q Consensus 104 ~gv~elf~~i~~~l~~~~~~~~ 125 (238)
+||-++....++.+...+.+..
T Consensus 327 egVm~Vrt~ACe~LLa~RVE~K 348 (620)
T KOG1490|consen 327 EGVMDVRTTACEALLAARVEQK 348 (620)
T ss_pred hceeeHHHHHHHHHHHHHHHHH
Confidence 9999999999999888776554
No 280
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.09 E-value=0.0052 Score=50.65 Aligned_cols=88 Identities=18% Similarity=0.172 Sum_probs=55.7
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH--HHHH-HHHHhCCCe--EEEEccCC
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS--QDAK-NLAASFKVK--FIEVSVGI 102 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~~-~~~~~~~~~--~~evSA~t 102 (238)
+-.+++++.|.....-+.-++.++-+.+ .++|+++|+||+|.....+... .... .+....... ++..|+.+
T Consensus 106 ~L~~vvlliD~r~~~~~~D~em~~~l~~----~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~ 181 (200)
T COG0218 106 NLKGVVLLIDARHPPKDLDREMIEFLLE----LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLK 181 (200)
T ss_pred hheEEEEEEECCCCCcHHHHHHHHHHHH----cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEeccc
Confidence 4566777777733222222344444544 7899999999999876544322 1222 222223333 78899999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy14042 103 HHNVDELLVGILNQIRL 119 (238)
Q Consensus 103 ~~gv~elf~~i~~~l~~ 119 (238)
+.|++++...|.+.+.+
T Consensus 182 k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 182 KKGIDELKAKILEWLKE 198 (200)
T ss_pred ccCHHHHHHHHHHHhhc
Confidence 99999999999876643
No 281
>KOG0273|consensus
Probab=97.05 E-value=0.00085 Score=61.14 Aligned_cols=52 Identities=19% Similarity=0.464 Sum_probs=48.4
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeecCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLNR 223 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~~ 223 (238)
-+...+|++++..+..|.-+|++++|+.+|+.++.+..| ..||.+|+|....
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~H------kgPI~slKWnk~G 288 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQH------KGPIFSLKWNKKG 288 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhcc------CCceEEEEEcCCC
Confidence 678999999999999999999999999999999999988 7799999998754
No 282
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=96.99 E-value=0.0024 Score=59.35 Aligned_cols=95 Identities=16% Similarity=0.152 Sum_probs=56.8
Q ss_pred eEEEEEEEe----CCCc-ccccC--CceEEEEEEECCcchHH-------HHHHHHHHHHHhcCCCCCC-EEEEEEeccCC
Q psy14042 10 GKVRAIIWN----EQYE-KLTSS--DETGLIIVWMLYKPSYH-------RVEQDVIRLHEEGYLRTRP-AIIVANKIDLA 74 (238)
Q Consensus 10 ~~v~l~iWD----e~~~-~l~~~--~ad~~IlV~dvd~~s~~-------~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~ 74 (238)
....+.|.| ++|. .+... .+|++|+|.|....-|+ ..+.-+..+.. .++| +|++.||.|+.
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDK 158 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEccccc
Confidence 346788899 4553 23222 99999999999544331 12222222322 4566 67999999953
Q ss_pred C---cccc---cHHHHHHHHHhC-----CCeEEEEccCCCCCHHH
Q psy14042 75 R---ARAV---SSQDAKNLAASF-----KVKFIEVSVGIHHNVDE 108 (238)
Q Consensus 75 ~---~~~v---~~~~~~~~~~~~-----~~~~~evSA~t~~gv~e 108 (238)
. .+.. ..+++..+.+.. .++++.+||.+|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 2 1111 123344444433 36799999999999864
No 283
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=96.98 E-value=0.0072 Score=52.56 Aligned_cols=70 Identities=11% Similarity=-0.012 Sum_probs=42.9
Q ss_pred CceEEEEEEECCcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccCCCccc--ccHHHHHHHHHhCCCeEEEEccCC
Q psy14042 28 DETGLIIVWMLYKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDLARARA--VSSQDAKNLAASFKVKFIEVSVGI 102 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~--v~~~~~~~~~~~~~~~~~evSA~t 102 (238)
.+|+++++.+.....+... ...+..+. ..+|+++|+||+|+....+ .....+.+.++.+++++|......
T Consensus 114 rvh~~ly~i~~~~~~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 114 RVHACLYFIEPTGHGLKPLDIEFMKRLS-----KRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred ceEEEEEEEeCCCCCCCHHHHHHHHHHh-----ccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 4555555555432223222 23333332 3689999999999965333 345567777888999988776543
No 284
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=96.93 E-value=0.0027 Score=55.03 Aligned_cols=87 Identities=14% Similarity=0.064 Sum_probs=49.2
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc-cccHH
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR-AVSSQ 82 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~-~v~~~ 82 (238)
..++.+|| .+|...+.. .+|++|+|.|.....-......+..+.+ .++|++++.||+|+.... ....+
T Consensus 63 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~----~~~p~ivviNK~D~~~a~~~~~~~ 138 (270)
T cd01886 63 DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADR----YNVPRIAFVNKMDRTGADFFRVVE 138 (270)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHH
Confidence 36788999 334332222 8999999999822222222334444443 568999999999997422 11122
Q ss_pred HHHHHHHhCCCe-EEEEccC
Q psy14042 83 DAKNLAASFKVK-FIEVSVG 101 (238)
Q Consensus 83 ~~~~~~~~~~~~-~~evSA~ 101 (238)
+++.......++ .+++|+.
T Consensus 139 ~l~~~l~~~~~~~~~Pisa~ 158 (270)
T cd01886 139 QIREKLGANPVPLQLPIGEE 158 (270)
T ss_pred HHHHHhCCCceEEEeccccC
Confidence 333333222222 5667775
No 285
>KOG1707|consensus
Probab=96.93 E-value=0.0065 Score=57.20 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=67.3
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCe-EEEEccCCCCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVK-FIEVSVGIHHN 105 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~-~~evSA~t~~g 105 (238)
-+|++.++||. ++.+|+.+....+. +......|+++|+.|+||.+..+...-...+++.+++++ ....|.++...
T Consensus 495 ~cDv~~~~YDsS~p~sf~~~a~v~~~---~~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s 571 (625)
T KOG1707|consen 495 ACDVACLVYDSSNPRSFEYLAEVYNK---YFDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS 571 (625)
T ss_pred eeeeEEEecccCCchHHHHHHHHHHH---hhhccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC
Confidence 78999999999 89999987766554 222378999999999999876554444448889999885 56677775333
Q ss_pred HHHHHHHHHHHHHh
Q psy14042 106 VDELLVGILNQIRL 119 (238)
Q Consensus 106 v~elf~~i~~~l~~ 119 (238)
.++|..|+.+...
T Consensus 572 -~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 572 -NELFIKLATMAQY 584 (625)
T ss_pred -chHHHHHHHhhhC
Confidence 8999999977643
No 286
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.92 E-value=0.0026 Score=55.89 Aligned_cols=59 Identities=20% Similarity=0.153 Sum_probs=40.0
Q ss_pred CCCCEEEEEEeccCCCcccccH--HH----HHHHHHh---CCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 60 RTRPAIIVANKIDLARARAVSS--QD----AKNLAAS---FKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 60 ~~~piilVgNK~DL~~~~~v~~--~~----~~~~~~~---~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
.+.|.++|.||+|+........ .. ...+.+. +..+++.+||+++.|+++++..+.+...
T Consensus 171 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 171 MEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred hhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 4577899999999975432111 00 1111111 2346999999999999999999998754
No 287
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=96.87 E-value=0.0046 Score=53.30 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=55.2
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ 82 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~ 82 (238)
.+.+.+|| ..|...+.. .+|++++|+|. +.........| ..+.. .++|.+++.||+|+.... ..+
T Consensus 63 ~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~----~~~p~iivvNK~D~~~~~--~~~ 135 (268)
T cd04170 63 GHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE----AGIPRIIFINKMDRERAD--FDK 135 (268)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEECCccCCCC--HHH
Confidence 46788999 334332222 89999999999 54444333333 23333 568999999999987542 223
Q ss_pred HHHHHHHhCCCeE--EEEccCCCCCHHHHHH
Q psy14042 83 DAKNLAASFKVKF--IEVSVGIHHNVDELLV 111 (238)
Q Consensus 83 ~~~~~~~~~~~~~--~evSA~t~~gv~elf~ 111 (238)
....+.+.++.++ +.+...++.++..+.+
T Consensus 136 ~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd 166 (268)
T cd04170 136 TLAALQEAFGRPVVPLQLPIGEGDDFKGVVD 166 (268)
T ss_pred HHHHHHHHhCCCeEEEEecccCCCceeEEEE
Confidence 3444445555543 3444566555544433
No 288
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.86 E-value=0.0021 Score=52.81 Aligned_cols=54 Identities=24% Similarity=0.171 Sum_probs=43.6
Q ss_pred CEEEEEEeccCCCcccccHHHHHHHHHhC--CCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 63 PAIIVANKIDLARARAVSSQDAKNLAASF--KVKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 63 piilVgNK~DL~~~~~v~~~~~~~~~~~~--~~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
-=++|.||.||...-....+...+-+++. +.+++++|++||+|+++++.++...
T Consensus 144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 35799999999876666666666666664 5789999999999999998888754
No 289
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.83 E-value=0.0067 Score=54.19 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=52.2
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc--cHHHHHHHHHh-------CCCeEEEE
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV--SSQDAKNLAAS-------FKVKFIEV 98 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~~~~-------~~~~~~ev 98 (238)
.+|.+++|.+. .+-++++.....+.. ..-++|.||+|+...... ...+.+..... +..+++.+
T Consensus 169 ~aD~vlvv~~p--~~gd~iq~~k~gi~E------~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~v 240 (332)
T PRK09435 169 MVDFFLLLQLP--GAGDELQGIKKGIME------LADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTC 240 (332)
T ss_pred hCCEEEEEecC--CchHHHHHHHhhhhh------hhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEE
Confidence 78988888553 222333322222222 223899999998754321 11222222221 23579999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhh
Q psy14042 99 SVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 99 SA~t~~gv~elf~~i~~~l~~~ 120 (238)
||+++.|+++++..|.+.+...
T Consensus 241 SA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 241 SALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred ECCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999887643
No 290
>KOG0271|consensus
Probab=96.75 E-value=0.0043 Score=55.50 Aligned_cols=81 Identities=21% Similarity=0.368 Sum_probs=57.7
Q ss_pred EeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCee-eeeeeecCCCCCceeEE
Q psy14042 148 IVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFM-NKVSMWSGPGSEMGEIA 215 (238)
Q Consensus 148 ~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~-~~~~~~~~~~~~~~~i~ 215 (238)
+.|+-|-+ |+|..+.+. -++.++.|+||++.+--|..+|+|.+||.. |..+ ..+.=| ...|.
T Consensus 131 ~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH------~K~It 204 (480)
T KOG0271|consen 131 VTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGH------KKWIT 204 (480)
T ss_pred EecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCc------cccee
Confidence 45566666 999866431 288999999999999999999999999963 4443 333322 66899
Q ss_pred EEEeecCCCcccccccccCC
Q psy14042 216 ALKYYLNRTSARSLNKFEGC 235 (238)
Q Consensus 216 ~~~w~~~~~~~~~~~~~~~~ 235 (238)
+|.|...+-..+.+ .+|-|
T Consensus 205 ~Lawep~hl~p~~r-~las~ 223 (480)
T KOG0271|consen 205 ALAWEPLHLVPPCR-RLASS 223 (480)
T ss_pred EEeecccccCCCcc-ceecc
Confidence 99998876554433 44443
No 291
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=96.67 E-value=0.011 Score=57.99 Aligned_cols=61 Identities=16% Similarity=0.036 Sum_probs=41.5
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA 76 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~ 76 (238)
..++.+|| .+|...... .+|++|+|+|. +....+... ++..+.. .++|+++|+||+|+...
T Consensus 74 ~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 74 GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR----YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH----cCCCEEEEEECCCCCCC
Confidence 36789999 445443322 89999999999 544444333 3333433 56899999999999753
No 292
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.0036 Score=55.24 Aligned_cols=88 Identities=20% Similarity=0.228 Sum_probs=61.3
Q ss_pred CceEEEEEEECC-----cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc--cHHHHHHHHHh---CCCeEEE
Q psy14042 28 DETGLIIVWMLY-----KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV--SSQDAKNLAAS---FKVKFIE 97 (238)
Q Consensus 28 ~ad~~IlV~dvd-----~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~~~~---~~~~~~e 97 (238)
=.|++++|...+ +++-+.+. ...-..-..+|+|-||+||...+.. ..+++.+|.+- -+.|.+.
T Consensus 109 lMDgAlLvIaANEpcPQPQT~EHl~-------AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIP 181 (415)
T COG5257 109 LMDGALLVIAANEPCPQPQTREHLM-------ALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIP 181 (415)
T ss_pred hhcceEEEEecCCCCCCCchHHHHH-------HHhhhccceEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceee
Confidence 358899998872 23333221 1111134568999999999765443 34567777764 3689999
Q ss_pred EccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 98 VSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 98 vSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
+||..+.|+|.+++.|.+.++.-..
T Consensus 182 iSA~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 182 ISAQHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred ehhhhccCHHHHHHHHHHhCCCCcc
Confidence 9999999999999999988865543
No 293
>PRK12739 elongation factor G; Reviewed
Probab=96.59 E-value=0.013 Score=57.29 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=37.3
Q ss_pred EEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
.++.++| ..|...+.. .+|++|+|.|. +.-.-+. +..+..+.+ .+.|++++.||+|+.
T Consensus 73 ~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~----~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 73 HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK----YGVPRIVFVNKMDRI 138 (691)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCC
Confidence 5678899 233322222 89999999999 4322222 233333433 568999999999986
No 294
>KOG1144|consensus
Probab=96.55 E-value=0.014 Score=56.51 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=66.3
Q ss_pred EEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc------
Q psy14042 14 AIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA------ 76 (238)
Q Consensus 14 l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~------ 76 (238)
+.+.| |.|..|.+. -+|.+|+|.|+ . +++.+.+. .|+. .+.|+|++.||+|..-.
T Consensus 542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~----lLR~----rktpFivALNKiDRLYgwk~~p~ 613 (1064)
T KOG1144|consen 542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN----LLRM----RKTPFIVALNKIDRLYGWKSCPN 613 (1064)
T ss_pred eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHH----HHHh----cCCCeEEeehhhhhhcccccCCC
Confidence 44566 888777765 78999999999 3 55555433 2222 78999999999996211
Q ss_pred -----------ccccH-------HHHHHHHHh-C-----------C--CeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 77 -----------RAVSS-------QDAKNLAAS-F-----------K--VKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 77 -----------~~v~~-------~~~~~~~~~-~-----------~--~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
..+.. .-..+|+++ + + +..+++||.+|+||.+|+..|++..+....
T Consensus 614 ~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~ 691 (1064)
T KOG1144|consen 614 APIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMV 691 (1064)
T ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHH
Confidence 00100 011122221 1 1 346889999999999999999988766543
No 295
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.50 E-value=0.061 Score=49.31 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=62.4
Q ss_pred EEEEEe-CCC----cccccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHH
Q psy14042 13 RAIIWN-EQY----EKLTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAK 85 (238)
Q Consensus 13 ~l~iWD-e~~----~~l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~ 85 (238)
.+.+-| ..| ++|... ..|.+++|.+.|..--....+-+.-+.- ..-.-.++|.+|+|+.+...+. +..+
T Consensus 51 ~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdl---lgi~~giivltk~D~~d~~r~e-~~i~ 126 (447)
T COG3276 51 VMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDL---LGIKNGIIVLTKADRVDEARIE-QKIK 126 (447)
T ss_pred ceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHh---cCCCceEEEEeccccccHHHHH-HHHH
Confidence 566777 233 344444 8899999998843222222222222221 1334469999999997654221 1222
Q ss_pred HHHHh---CCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 86 NLAAS---FKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 86 ~~~~~---~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
+.... ...++|.+|+++|+||+++...|.....
T Consensus 127 ~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 127 QILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred HHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 22222 2457899999999999999999998774
No 296
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.49 E-value=0.0058 Score=53.45 Aligned_cols=56 Identities=18% Similarity=0.203 Sum_probs=39.5
Q ss_pred CCCEEEEEEeccCCCcccccHHHHHHHHHh--CCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 61 TRPAIIVANKIDLARARAVSSQDAKNLAAS--FKVKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 61 ~~piilVgNK~DL~~~~~v~~~~~~~~~~~--~~~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
..+-++|.||+||........+...+..+. ...+++.+||++|+|++++..+|.++
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 467789999999965322222233333333 25789999999999999999999753
No 297
>COG1084 Predicted GTPase [General function prediction only]
Probab=96.49 E-value=0.0074 Score=53.29 Aligned_cols=86 Identities=14% Similarity=0.126 Sum_probs=57.8
Q ss_pred CceEEEEEEECCcch---HHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCC
Q psy14042 28 DETGLIIVWMLYKPS---YHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHH 104 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s---~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~ 104 (238)
=+++++++||..+.+ .+.-..++++++..- +.|+++|.||+|+...+.+...+.. +....+.....+++..+.
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~ 322 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKLEEIEAS-VLEEGGEEPLKISATKGC 322 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHHHHHHHH-HHhhccccccceeeeehh
Confidence 467888899995444 444445666666543 3899999999999765443332222 333334447778999999
Q ss_pred CHHHHHHHHHHHH
Q psy14042 105 NVDELLVGILNQI 117 (238)
Q Consensus 105 gv~elf~~i~~~l 117 (238)
+++.+...+....
T Consensus 323 ~~d~~~~~v~~~a 335 (346)
T COG1084 323 GLDKLREEVRKTA 335 (346)
T ss_pred hHHHHHHHHHHHh
Confidence 9998887777554
No 298
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=96.48 E-value=0.021 Score=52.83 Aligned_cols=109 Identities=15% Similarity=0.151 Sum_probs=70.5
Q ss_pred EEECCeEEEEEEEe----CCCcc-cccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc
Q psy14042 5 LQGHSGKVRAIIWN----EQYEK-LTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR 77 (238)
Q Consensus 5 i~~~~~~v~l~iWD----e~~~~-l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~ 77 (238)
|..++ ++++|.| ..|-- +-.. -.|+++++.|..+.+.-..+.-+.+..+ .+.+-|+|.||+|.+..+
T Consensus 63 v~~~~--~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Ar 136 (603)
T COG1217 63 VNYNG--TRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA----LGLKPIVVINKIDRPDAR 136 (603)
T ss_pred eecCC--eEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH----cCCCcEEEEeCCCCCCCC
Confidence 34444 7889999 22211 1111 5899999999966555555555555544 567778889999998653
Q ss_pred c--ccHHHHHHHH------HhCCCeEEEEccCCCC----------CHHHHHHHHHHHHHh
Q psy14042 78 A--VSSQDAKNLA------ASFKVKFIEVSVGIHH----------NVDELLVGILNQIRL 119 (238)
Q Consensus 78 ~--v~~~~~~~~~------~~~~~~~~evSA~t~~----------gv~elf~~i~~~l~~ 119 (238)
. +..+-..-|. .++++|++..|++.|+ +..-||+.|++.++.
T Consensus 137 p~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 137 PDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred HHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 2 2222222222 3467899999998873 677888888877644
No 299
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.48 E-value=0.011 Score=38.80 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=26.9
Q ss_pred ceEEEEEEECCc---chHHHHHHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042 29 ETGLIIVWMLYK---PSYHRVEQDVIRLHEEGYLRTRPAIIVANKID 72 (238)
Q Consensus 29 ad~~IlV~dvd~---~s~~~~~~~~~~l~~~~~~~~~piilVgNK~D 72 (238)
.+++++++|... -|.+.=..++.+++..- .+.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 578899999933 34555556777777655 6999999999998
No 300
>KOG0283|consensus
Probab=96.37 E-value=0.016 Score=55.96 Aligned_cols=83 Identities=20% Similarity=0.428 Sum_probs=64.1
Q ss_pred eeecceEEeecccCc-eeeec---------ccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeee-e--eeeecCC
Q psy14042 141 LVRASAVIVGSVDGN-RIWGK---------EFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMN-K--VSMWSGP 207 (238)
Q Consensus 141 ~~~~~~~~~~~~~g~-rv~g~---------~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~-~--~~~~~~~ 207 (238)
+..+...+-|+.||. |+|+- +++. ++..+.+.|||+...+||-+|.|++|+.+|+.+. . +.++..-
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~-lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRD-LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeEeehhhhh-hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 367788899999998 99984 3454 7788899999999999999999999999999843 3 3333333
Q ss_pred CCCceeEEEEEeecCCC
Q psy14042 208 GSEMGEIAALKYYLNRT 224 (238)
Q Consensus 208 ~~~~~~i~~~~w~~~~~ 224 (238)
+...-+|.|+.-..+..
T Consensus 498 k~~~~rITG~Q~~p~~~ 514 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDP 514 (712)
T ss_pred cccCceeeeeEecCCCC
Confidence 33344899999776544
No 301
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.20 E-value=0.019 Score=51.28 Aligned_cols=92 Identities=24% Similarity=0.271 Sum_probs=62.4
Q ss_pred EEEEEEEe----CCC-cccccC--CceEEEEEEECCcchHHHHH--HHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042 11 KVRAIIWN----EQY-EKLTSS--DETGLIIVWMLYKPSYHRVE--QDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS 81 (238)
Q Consensus 11 ~v~l~iWD----e~~-~~l~~~--~ad~~IlV~dvd~~s~~~~~--~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~ 81 (238)
.=++.|=| |.| |.|.+. -||.+|++.|....-++..+ .++..+. .=+.++|..||.||.+-.+--.
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL-----GIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL-----GIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh-----CCcEEEEEEeeecccccCHHHH
Confidence 34567778 556 566665 89999999998555444442 2333332 3356899999999986433222
Q ss_pred ----HHHHHHHHhCCC---eEEEEccCCCCCHH
Q psy14042 82 ----QDAKNLAASFKV---KFIEVSVGIHHNVD 107 (238)
Q Consensus 82 ----~~~~~~~~~~~~---~~~evSA~t~~gv~ 107 (238)
.+...|++++++ .++++||..|+||-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 345667888875 59999999999875
No 302
>KOG0647|consensus
Probab=96.02 E-value=0.038 Score=48.19 Aligned_cols=75 Identities=20% Similarity=0.368 Sum_probs=62.0
Q ss_pred ecceEEeecccCc-eeeecc------------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCC
Q psy14042 143 RASAVIVGSVDGN-RIWGKE------------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGS 209 (238)
Q Consensus 143 ~~~~~~~~~~~g~-rv~g~~------------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~ 209 (238)
...+...++-||+ |+|--+ +.. .+..+.|+.|+..++.|..+|++.+||-.-+.+.++.+|
T Consensus 39 ~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~-PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~H----- 112 (347)
T KOG0647|consen 39 ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDG-PVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAH----- 112 (347)
T ss_pred cCceEEecccCCceEEEEEecCCcccchhhhccCC-CeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeec-----
Confidence 3455567788887 887532 344 788999999999999999999999999998899999999
Q ss_pred CceeEEEEEeecCCC
Q psy14042 210 EMGEIAALKYYLNRT 224 (238)
Q Consensus 210 ~~~~i~~~~w~~~~~ 224 (238)
+.++..++|-.+-.
T Consensus 113 -d~pvkt~~wv~~~~ 126 (347)
T KOG0647|consen 113 -DAPVKTCHWVPGMN 126 (347)
T ss_pred -ccceeEEEEecCCC
Confidence 67888888887654
No 303
>KOG1532|consensus
Probab=95.90 E-value=0.18 Score=43.92 Aligned_cols=91 Identities=12% Similarity=0.060 Sum_probs=55.0
Q ss_pred CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc-----HHHHHHHH----------
Q psy14042 28 DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS-----SQDAKNLA---------- 88 (238)
Q Consensus 28 ~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~-----~~~~~~~~---------- 88 (238)
..-++++|.|. . +.+|-.-.-+-..|. |. ...|.|+|.||+|+....-.. .+..++..
T Consensus 147 ~ptvv~YvvDt~rs~~p~tFMSNMlYAcSil-yk--tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~ 223 (366)
T KOG1532|consen 147 FPTVVVYVVDTPRSTSPTTFMSNMLYACSIL-YK--TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSN 223 (366)
T ss_pred CCeEEEEEecCCcCCCchhHHHHHHHHHHHH-Hh--ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHH
Confidence 44555556665 2 333433333333333 22 789999999999996542111 01111111
Q ss_pred ---------Hh--CCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 89 ---------AS--FKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 89 ---------~~--~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
.+ .++..+-|||.||.|.+++|.++-+.+.+..
T Consensus 224 l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~ 267 (366)
T KOG1532|consen 224 LTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYE 267 (366)
T ss_pred hhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHH
Confidence 11 2467899999999999999999987776543
No 304
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=95.89 E-value=0.035 Score=49.14 Aligned_cols=55 Identities=33% Similarity=0.387 Sum_probs=43.8
Q ss_pred CCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 61 TRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 61 ~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
-+|.+.|.||+|+.. .++...+.+.. .++.+||++++|++++.+.|.+.+--.+-
T Consensus 239 Y~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~liRV 293 (365)
T COG1163 239 YKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGLIRV 293 (365)
T ss_pred eeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCeEEE
Confidence 479999999999975 33444444444 78999999999999999999998866553
No 305
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=95.87 E-value=0.03 Score=55.10 Aligned_cols=64 Identities=9% Similarity=0.029 Sum_probs=42.0
Q ss_pred EECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 6 QGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 6 ~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
..++..+.+.+|| .+|...... .+|++|+|+|. +.-..+... .+..+.+ .+.|+++++||+|..
T Consensus 80 ~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~-~~~~~~~----~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 80 EYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTET-VLRQALK----ENVKPVLFINKVDRL 151 (720)
T ss_pred eecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHH-HHHHHHH----cCCCEEEEEEChhcc
Confidence 3566779999999 556543333 99999999998 422122212 2222222 467889999999985
No 306
>COG1161 Predicted GTPases [General function prediction only]
Probab=95.77 E-value=0.021 Score=50.75 Aligned_cols=79 Identities=18% Similarity=0.096 Sum_probs=56.0
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV 106 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv 106 (238)
..|.++-|.|. ++.+..+ ..+.++. .+.|.++|+||+||..... .....+.+.++.+...+.++++.+.+.
T Consensus 34 ~~d~vvevvDar~P~~s~~-----~~l~~~v--~~k~~i~vlNK~DL~~~~~-~~~W~~~~~~~~~~~~~~v~~~~~~~~ 105 (322)
T COG1161 34 SVDVVVEVVDARDPLGTRN-----PELERIV--KEKPKLLVLNKADLAPKEV-TKKWKKYFKKEEGIKPIFVSAKSRQGG 105 (322)
T ss_pred cCCEEEEEEeccccccccC-----ccHHHHH--ccCCcEEEEehhhcCCHHH-HHHHHHHHHhcCCCccEEEEeecccCc
Confidence 78999999999 7654432 2233333 4556699999999976544 455667777777888888999988887
Q ss_pred HHHHHHHH
Q psy14042 107 DELLVGIL 114 (238)
Q Consensus 107 ~elf~~i~ 114 (238)
..+...+.
T Consensus 106 ~~i~~~~~ 113 (322)
T COG1161 106 KKIRKALE 113 (322)
T ss_pred cchHHHHH
Confidence 77765443
No 307
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.76 E-value=0.023 Score=45.92 Aligned_cols=44 Identities=18% Similarity=0.050 Sum_probs=26.3
Q ss_pred eEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042 30 TGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA 76 (238)
Q Consensus 30 d~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~ 76 (238)
|++++|.|. ++.+-. ...+.+.+. ....+.|+++|.||+||...
T Consensus 1 DvVl~VvDar~p~~~~-~~~i~~~~~--l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCR-CPQVEEAVL--QAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCC-CHHHHHHHH--hccCCCCEEEEEehhhcCCH
Confidence 678888888 532221 122222221 11156899999999999653
No 308
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.71 E-value=0.037 Score=34.89 Aligned_cols=33 Identities=12% Similarity=0.310 Sum_probs=29.9
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFM 198 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~ 198 (238)
.+....|+|.-.++-+|+.+|+|.+|.-+|.-+
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI 45 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence 677999999999999999999999999987653
No 309
>KOG1191|consensus
Probab=95.33 E-value=0.066 Score=49.73 Aligned_cols=95 Identities=16% Similarity=0.100 Sum_probs=57.5
Q ss_pred CceEEEEEEECCcchHHH---HHHHHHHHHHhc----C-CCCCCEEEEEEeccCCCc-ccccHHHHHHHHHhCC---Ce-
Q psy14042 28 DETGLIIVWMLYKPSYHR---VEQDVIRLHEEG----Y-LRTRPAIIVANKIDLARA-RAVSSQDAKNLAASFK---VK- 94 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~---~~~~~~~l~~~~----~-~~~~piilVgNK~DL~~~-~~v~~~~~~~~~~~~~---~~- 94 (238)
.||.+++|+|.....++. +...++....-. . ....|++++.||+|+... .+........... .+ .+
T Consensus 348 ~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~~i 426 (531)
T KOG1191|consen 348 RADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVFPI 426 (531)
T ss_pred hcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCcccce
Confidence 899999999983223322 223333321110 0 134789999999999654 2211111111111 22 23
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042 95 FIEVSVGIHHNVDELLVGILNQIRLKRSL 123 (238)
Q Consensus 95 ~~evSA~t~~gv~elf~~i~~~l~~~~~~ 123 (238)
..++|++|++|++++...+...+......
T Consensus 427 ~~~vs~~tkeg~~~L~~all~~~~~~~~~ 455 (531)
T KOG1191|consen 427 VVEVSCTTKEGCERLSTALLNIVERLVVS 455 (531)
T ss_pred EEEeeechhhhHHHHHHHHHHHHHHhhcC
Confidence 56699999999999999999888776653
No 310
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=95.09 E-value=0.042 Score=44.84 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=39.7
Q ss_pred EEEEEe----CCCcc--ccc---C-CceEEEEEEEC--CcchHHHHHHHHHHHHHhcC--CCCCCEEEEEEeccCCC
Q psy14042 13 RAIIWN----EQYEK--LTS---S-DETGLIIVWML--YKPSYHRVEQDVIRLHEEGY--LRTRPAIIVANKIDLAR 75 (238)
Q Consensus 13 ~l~iWD----e~~~~--l~~---~-~ad~~IlV~dv--d~~s~~~~~~~~~~l~~~~~--~~~~piilVgNK~DL~~ 75 (238)
.+.+.| ++.|. +.. . .+.++|+|.|. +...+.++.+++-.+..... ...+|++|+.||.|+..
T Consensus 50 ~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 50 KLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp CECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 467788 44443 222 2 88999999998 35566666665555544332 37889999999999853
No 311
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=94.99 E-value=0.09 Score=45.42 Aligned_cols=61 Identities=23% Similarity=0.341 Sum_probs=48.2
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeec-CCCCCceeEEEEEeecCCCcc
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWS-GPGSEMGEIAALKYYLNRTSA 226 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~-~~~~~~~~i~~~~w~~~~~~~ 226 (238)
.-.++.||||..++.+...+|.|++||..|..+..+.-.+ .++.-...|+||---..+.++
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~ 106 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSA 106 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeecccccc
Confidence 5678999999999999999999999999999887666554 344446778888665555443
No 312
>PRK00007 elongation factor G; Reviewed
Probab=94.86 E-value=0.19 Score=49.28 Aligned_cols=29 Identities=17% Similarity=0.099 Sum_probs=24.6
Q ss_pred CeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 93 VKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 93 ~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
+|++..||.++.|++.+++.|++.++.-.
T Consensus 255 ~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~ 283 (693)
T PRK00007 255 VPVLCGSAFKNKGVQPLLDAVVDYLPSPL 283 (693)
T ss_pred EEEEecccccCcCHHHHHHHHHHHCCChh
Confidence 46788899999999999999998886543
No 313
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=94.82 E-value=0.095 Score=47.76 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=58.6
Q ss_pred CeEEEEEEEe----CCC-cccccC--CceEEEEEEECCcchHHHH----HHHHHH--HHHhcCCCCCCEEEEEEeccCCC
Q psy14042 9 SGKVRAIIWN----EQY-EKLTSS--DETGLIIVWMLYKPSYHRV----EQDVIR--LHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 9 ~~~v~l~iWD----e~~-~~l~~~--~ad~~IlV~dvd~~s~~~~----~~~~~~--l~~~~~~~~~piilVgNK~DL~~ 75 (238)
.....+.|.| ..| ..+... +||++|||.|.+...|+.- -+..+. |.+.- .-..+|++.||.|+.+
T Consensus 82 t~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--Gi~~lIVavNKMD~v~ 159 (428)
T COG5256 82 TDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--GIKQLIVAVNKMDLVS 159 (428)
T ss_pred cCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc--CCceEEEEEEcccccc
Confidence 3346788888 222 334443 9999999999954444332 111111 22221 3345789999999975
Q ss_pred cccccH----HHHHHHHHhCC-----CeEEEEccCCCCCHHHH
Q psy14042 76 ARAVSS----QDAKNLAASFK-----VKFIEVSVGIHHNVDEL 109 (238)
Q Consensus 76 ~~~v~~----~~~~~~~~~~~-----~~~~evSA~t~~gv~el 109 (238)
-++--. .+...+.+..| ++|+++||..|.|+.+.
T Consensus 160 wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 160 WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 322111 12333555544 56999999999997653
No 314
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=94.72 E-value=0.15 Score=42.82 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=49.1
Q ss_pred EEEEEEEe--CCCcccccC--CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCE-EEEEEeccCCCccccc---H
Q psy14042 11 KVRAIIWN--EQYEKLTSS--DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPA-IIVANKIDLARARAVS---S 81 (238)
Q Consensus 11 ~v~l~iWD--e~~~~l~~~--~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~pi-ilVgNK~DL~~~~~v~---~ 81 (238)
..++.+.| ..+..+... .+|++++|.|. ...... ...++..+.. .+.|. ++|.||.|+....... .
T Consensus 82 ~~~i~~vDtPg~~~~~l~~ak~aDvVllviDa~~~~~~~-~~~i~~~l~~----~g~p~vi~VvnK~D~~~~~~~~~~~~ 156 (225)
T cd01882 82 KRRLTFIECPNDINAMIDIAKVADLVLLLIDASFGFEME-TFEFLNILQV----HGFPRVMGVLTHLDLFKKNKTLRKTK 156 (225)
T ss_pred CceEEEEeCCchHHHHHHHHHhcCEEEEEEecCcCCCHH-HHHHHHHHHH----cCCCeEEEEEeccccCCcHHHHHHHH
Confidence 34556677 222222222 89999999998 322222 2233333433 45774 5599999996432211 1
Q ss_pred HHHHH-HHHh--CCCeEEEEccCCCC
Q psy14042 82 QDAKN-LAAS--FKVKFIEVSVGIHH 104 (238)
Q Consensus 82 ~~~~~-~~~~--~~~~~~evSA~t~~ 104 (238)
.+++. +.++ .+.+++.+||++.-
T Consensus 157 ~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 157 KRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred HHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 22222 3322 24689999999883
No 315
>KOG0302|consensus
Probab=94.69 E-value=0.16 Score=45.61 Aligned_cols=77 Identities=17% Similarity=0.315 Sum_probs=61.6
Q ss_pred ecceEEeecccCc-eeeecccce-----------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC----CCeeeeeeeecC
Q psy14042 143 RASAVIVGSVDGN-RIWGKEFKK-----------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE----GNFMNKVSMWSG 206 (238)
Q Consensus 143 ~~~~~~~~~~~g~-rv~g~~~~~-----------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~----g~~~~~~~~~~~ 206 (238)
+.++....+.||. |+|..+... .-++-+.|+-.+.++.+|-.+|+++|||-. |..+..++.|
T Consensus 269 E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H-- 346 (440)
T KOG0302|consen 269 EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH-- 346 (440)
T ss_pred cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec--
Confidence 4567777788888 999876551 135667999999999999999999999973 6667778877
Q ss_pred CCCCceeEEEEEeecCCCc
Q psy14042 207 PGSEMGEIAALKYYLNRTS 225 (238)
Q Consensus 207 ~~~~~~~i~~~~w~~~~~~ 225 (238)
..||.+|+|+....+
T Consensus 347 ----k~pItsieW~p~e~s 361 (440)
T KOG0302|consen 347 ----KAPITSIEWHPHEDS 361 (440)
T ss_pred ----cCCeeEEEeccccCc
Confidence 789999999977665
No 316
>PRK07560 elongation factor EF-2; Reviewed
Probab=94.58 E-value=0.13 Score=50.74 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=39.2
Q ss_pred CCeEEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
++..+.+.+.| .+|...... .+|++|+|.|.....-...+..+..+.+ .+.|.|++.||+|+.
T Consensus 83 ~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 83 EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH----cCCCeEEEEECchhh
Confidence 44568889999 445332222 8999999999833222222222233333 346889999999975
No 317
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=94.55 E-value=0.21 Score=43.85 Aligned_cols=73 Identities=14% Similarity=0.244 Sum_probs=46.6
Q ss_pred cccccC--CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCccccc---HHHHHHHHHhC
Q psy14042 22 EKLTSS--DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARAVS---SQDAKNLAASF 91 (238)
Q Consensus 22 ~~l~~~--~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~v~---~~~~~~~~~~~ 91 (238)
+.|... +.|++|||.+. | +++-+.+ -..++ -.+| ++++.||+|+.++++.. +.+.+.+..++
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHi----Llarq----vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y 161 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTREHI----LLARQ----VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcchhhh----hhhhh----cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc
Confidence 445544 89999999988 4 3333322 11111 3565 67889999998765543 34677888887
Q ss_pred CC-----eEEEEccCC
Q psy14042 92 KV-----KFIEVSVGI 102 (238)
Q Consensus 92 ~~-----~~~evSA~t 102 (238)
++ |++.-||..
T Consensus 162 ~f~gd~~Pii~gSal~ 177 (394)
T COG0050 162 GFPGDDTPIIRGSALK 177 (394)
T ss_pred CCCCCCcceeechhhh
Confidence 64 466666653
No 318
>COG3596 Predicted GTPase [General function prediction only]
Probab=94.36 E-value=0.094 Score=45.46 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=57.7
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc---------------cccHHHHHHHHHhC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR---------------AVSSQDAKNLAASF 91 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~---------------~v~~~~~~~~~~~~ 91 (238)
..|.++++.+. |+.---+.+.| .++.... -+.|++++.|.+|..... +...+....+.+..
T Consensus 117 ~~DLvL~l~~~~draL~~d~~f~-~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~ 193 (296)
T COG3596 117 KLDLVLWLIKADDRALGTDEDFL-RDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF 193 (296)
T ss_pred hccEEEEeccCCCccccCCHHHH-HHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 78877777777 65433333333 3333322 458999999999985431 11111222222221
Q ss_pred --CCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 92 --KVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 92 --~~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
-.|++.+|...+||++++...+++.++....
T Consensus 194 q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r 226 (296)
T COG3596 194 QEVKPVVAVSGRLPWGLKELVRALITALPVEAR 226 (296)
T ss_pred hhcCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence 2478889999999999999999998875443
No 319
>KOG0461|consensus
Probab=93.93 E-value=0.29 Score=43.92 Aligned_cols=105 Identities=19% Similarity=0.149 Sum_probs=58.3
Q ss_pred CeEEEEEEEe-CCCcccccC------CceEEEEEEEC-C-cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc--c
Q psy14042 9 SGKVRAIIWN-EQYEKLTSS------DETGLIIVWML-Y-KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA--R 77 (238)
Q Consensus 9 ~~~v~l~iWD-e~~~~l~~~------~ad~~IlV~dv-d-~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~--~ 77 (238)
+...++.+.| .-..+|... =.|..++|.|+ . .++-..-.-.+.++.. ...++|.||+|+..+ +
T Consensus 67 ~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c------~klvvvinkid~lpE~qr 140 (522)
T KOG0461|consen 67 GEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC------KKLVVVINKIDVLPENQR 140 (522)
T ss_pred cccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc------cceEEEEeccccccchhh
Confidence 4456677788 444455443 34777888888 2 2222222233444322 456788899887432 2
Q ss_pred ccc-HHHHHHHHHh---C----CCeEEEEccCCC----CCHHHHHHHHHHHHHh
Q psy14042 78 AVS-SQDAKNLAAS---F----KVKFIEVSVGIH----HNVDELLVGILNQIRL 119 (238)
Q Consensus 78 ~v~-~~~~~~~~~~---~----~~~~~evSA~t~----~gv~elf~~i~~~l~~ 119 (238)
.-. ++...++.+. . +.|.+++||+.| +++.++...|-+.+.+
T Consensus 141 ~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 141 ASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred hhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 222 2222333332 1 268999999999 5666666665555543
No 320
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.79 E-value=0.19 Score=42.73 Aligned_cols=58 Identities=28% Similarity=0.316 Sum_probs=33.8
Q ss_pred CCCCEEEEEEeccCCCcc--c----------c-------cHHHHHHHH---HhCC-C-eEEEEccCCCCCHHHHHHHHHH
Q psy14042 60 RTRPAIIVANKIDLARAR--A----------V-------SSQDAKNLA---ASFK-V-KFIEVSVGIHHNVDELLVGILN 115 (238)
Q Consensus 60 ~~~piilVgNK~DL~~~~--~----------v-------~~~~~~~~~---~~~~-~-~~~evSA~t~~gv~elf~~i~~ 115 (238)
-+.|.|.|.||+||.... . . .....++++ ..++ . .|+.+|+.+++|+++++..+-+
T Consensus 155 ~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~ 234 (238)
T PF03029_consen 155 LELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDK 234 (238)
T ss_dssp HTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHH
T ss_pred CCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHH
Confidence 479999999999997622 0 0 000111222 2333 3 7999999999999999988765
Q ss_pred HH
Q psy14042 116 QI 117 (238)
Q Consensus 116 ~l 117 (238)
.+
T Consensus 235 a~ 236 (238)
T PF03029_consen 235 AN 236 (238)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 321
>KOG3886|consensus
Probab=93.75 E-value=0.12 Score=43.92 Aligned_cols=90 Identities=20% Similarity=0.310 Sum_probs=55.9
Q ss_pred EEEEEEEe--------CCCcccccC----CceEEEEEEEC-Ccc---hHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 11 KVRAIIWN--------EQYEKLTSS----DETGLIIVWML-YKP---SYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 11 ~v~l~iWD--------e~~~~l~~~----~ad~~IlV~dv-d~~---s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
++.|.+|| |.|-+.... +.+++|+|||+ .++ .|...+.-++.+.++. ++..++....|.||.
T Consensus 52 nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv 129 (295)
T KOG3886|consen 52 NLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLV 129 (295)
T ss_pred hheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhc
Confidence 46789999 444333222 89999999999 443 3444445555566655 778899999999996
Q ss_pred C--cccccHH----HHHHHHHhCCCeEEEEccCC
Q psy14042 75 R--ARAVSSQ----DAKNLAASFKVKFIEVSVGI 102 (238)
Q Consensus 75 ~--~~~v~~~----~~~~~~~~~~~~~~evSA~t 102 (238)
. .++.... ..+.+....++.++.+|.-+
T Consensus 130 ~~d~r~~if~~r~~~l~~~s~~~~~~~f~TsiwD 163 (295)
T KOG3886|consen 130 QEDARELIFQRRKEDLRRLSRPLECKCFPTSIWD 163 (295)
T ss_pred ccchHHHHHHHHHHHHHHhcccccccccccchhh
Confidence 3 2333222 22333334456677777653
No 322
>PRK09602 translation-associated GTPase; Reviewed
Probab=93.71 E-value=0.094 Score=48.03 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=39.6
Q ss_pred CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHH-HHHHHHHHHHhh
Q psy14042 60 RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDE-LLVGILNQIRLK 120 (238)
Q Consensus 60 ~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~e-lf~~i~~~l~~~ 120 (238)
...|+++|.||+|+..... ....+.+..+..++.+||+.+.++++ +++.+++.++..
T Consensus 216 t~KPvI~VlNK~D~~~~~~----~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~ 273 (396)
T PRK09602 216 ISKPMVIAANKADLPPAEE----NIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGD 273 (396)
T ss_pred cCCCEEEEEEchhcccchH----HHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCC
Confidence 3589999999999753221 12223322345689999999999999 777777666544
No 323
>KOG0282|consensus
Probab=93.63 E-value=0.11 Score=47.93 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=51.9
Q ss_pred eeeecccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCC-CeeeeeeeecCCCCCceeEEEEEeecCCCc
Q psy14042 156 RIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEG-NFMNKVSMWSGPGSEMGEIAALKYYLNRTS 225 (238)
Q Consensus 156 rv~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g-~~~~~~~~~~~~~~~~~~i~~~~w~~~~~~ 225 (238)
++.|-.... .-.++++|||+..+.-|.++|-+.+||-.- ..+.+++.+ ..+++++.|+...+|
T Consensus 425 ~feGh~vaG-ys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah------~~~ci~v~wHP~e~S 488 (503)
T KOG0282|consen 425 RFEGHSVAG-YSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH------DQPCIGVDWHPVEPS 488 (503)
T ss_pred hhcceeccC-ceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC------CcceEEEEecCCCcc
Confidence 555555554 667889999999999999999999999974 447777776 678999999998876
No 324
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=93.54 E-value=0.17 Score=29.48 Aligned_cols=27 Identities=22% Similarity=0.539 Sum_probs=25.8
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEe
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYD 192 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d 192 (238)
.+....|+|++..+.-|..+|.|++||
T Consensus 13 ~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 13 SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cEEEEEEecccccceeeCCCCEEEEEC
Confidence 788999999999999999999999997
No 325
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.48 E-value=0.54 Score=41.34 Aligned_cols=88 Identities=17% Similarity=0.143 Sum_probs=50.6
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHH--HH----Hh--CCCeEEEEc
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKN--LA----AS--FKVKFIEVS 99 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~--~~----~~--~~~~~~evS 99 (238)
-+|.+++|--. ..=+.++-+...+.. +-=|+|.||.|....+....+.... +. .+ +.-+++.+|
T Consensus 164 ~aDt~~~v~~p--g~GD~~Q~iK~GimE------iaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~ 235 (323)
T COG1703 164 MADTFLVVMIP--GAGDDLQGIKAGIME------IADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTS 235 (323)
T ss_pred hcceEEEEecC--CCCcHHHHHHhhhhh------hhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEee
Confidence 45666666543 222333333333333 3346788999965432211111111 11 11 234699999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042 100 VGIHHNVDELLVGILNQIRLKRSL 123 (238)
Q Consensus 100 A~t~~gv~elf~~i~~~l~~~~~~ 123 (238)
|.+|+|+++++..|.+........
T Consensus 236 A~~g~Gi~~L~~ai~~h~~~~~~s 259 (323)
T COG1703 236 ALEGEGIDELWDAIEDHRKFLTES 259 (323)
T ss_pred eccCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999877665544
No 326
>KOG3905|consensus
Probab=93.41 E-value=0.18 Score=44.91 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=47.7
Q ss_pred CCCEEEEEEeccCC----Cccc-------ccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 61 TRPAIIVANKIDLA----RARA-------VSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 61 ~~piilVgNK~DL~----~~~~-------v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
.+|+++|.+|||+. ...+ .....++.|+-.+|...+.+|++...|++-+...|+..+...
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG~ 292 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYGF 292 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcCc
Confidence 58999999999982 1111 122467889999999999999999999999999998776543
No 327
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.36 E-value=0.13 Score=44.20 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=34.6
Q ss_pred CCEEEEEEeccCCCcccccHHHHHHHH---Hh----CCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 62 RPAIIVANKIDLARARAVSSQDAKNLA---AS----FKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 62 ~piilVgNK~DL~~~~~v~~~~~~~~~---~~----~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
++=++|.||+|++..+.... +.+... .. +..|++.|||.++.|+++++..|.+.-...
T Consensus 168 iaDi~vVNKaD~~gA~~~~~-~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 168 IADIFVVNKADRPGADRTVR-DLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp H-SEEEEE--SHHHHHHHHH-HHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred hccEEEEeCCChHHHHHHHH-HHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 45578889999653322211 222222 11 235899999999999999999998765443
No 328
>KOG4640|consensus
Probab=92.68 E-value=0.39 Score=45.81 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=53.4
Q ss_pred ecceEEeecccCceeeecccceeeeE-EEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEee
Q psy14042 143 RASAVIVGSVDGNRIWGKEFKKTSML-GVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYY 220 (238)
Q Consensus 143 ~~~~~~~~~~~g~rv~g~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~ 220 (238)
..|-.++.+..=+|+|.=.+....+. .++|.|||+++-+|.+||+|.++|.. |.-+..- +-+....|-.+.|-
T Consensus 40 ~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~-----~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 40 EKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF-----LFSVETDISKGIWD 114 (665)
T ss_pred cCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc-----ccccccchheeecc
Confidence 44555555566679998664444555 99999999999999999999999996 4444432 22346688899996
No 329
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=92.64 E-value=1.4 Score=40.12 Aligned_cols=107 Identities=16% Similarity=0.162 Sum_probs=64.6
Q ss_pred EEEEEEEe---C-CCcccccC---CceEEEEEEEC-C--c--------chHHHHHHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042 11 KVRAIIWN---E-QYEKLTSS---DETGLIIVWML-Y--K--------PSYHRVEQDVIRLHEEGYLRTRPAIIVANKID 72 (238)
Q Consensus 11 ~v~l~iWD---e-~~~~l~~~---~ad~~IlV~dv-d--~--------~s~~~~~~~~~~l~~~~~~~~~piilVgNK~D 72 (238)
...+.++| . .-|+=|.. +++++|+|.++ + . ..+.+.-.....+.....-.+.|++|+.||.|
T Consensus 235 ~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D 314 (389)
T PF00503_consen 235 SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKID 314 (389)
T ss_dssp TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HH
T ss_pred ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHH
Confidence 36778999 1 12333333 99999999997 2 2 33555555666665544337899999999999
Q ss_pred CCC------c----------cc--ccHHHHHHHHH--------h----CCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 73 LAR------A----------RA--VSSQDAKNLAA--------S----FKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 73 L~~------~----------~~--v~~~~~~~~~~--------~----~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
+-. . .. -..+.+..+.. . ..+-+..|+|....++..+|..+.+.|
T Consensus 315 ~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 315 LFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 721 0 11 12233333221 1 122456888988899999988887543
No 330
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=92.61 E-value=1.3 Score=36.02 Aligned_cols=92 Identities=16% Similarity=0.141 Sum_probs=57.1
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccCCCccccc------HHHHHHHHHhCCCeEEEEc-
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDLARARAVS------SQDAKNLAASFKVKFIEVS- 99 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~~~~~v~------~~~~~~~~~~~~~~~~evS- 99 (238)
+.|++|+|.++++.+ ......++.+++..+. .-.++++|.|+.|-.....+. ....+.+.+..+-.|+..+
T Consensus 83 g~~~illVi~~~~~t-~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~ 161 (196)
T cd01852 83 GPHAFLLVVPLGRFT-EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNN 161 (196)
T ss_pred CCEEEEEEEECCCcC-HHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeC
Confidence 789999999984322 2223344445443221 236788999999865432221 1345556666665554444
Q ss_pred ----cCCCCCHHHHHHHHHHHHHhh
Q psy14042 100 ----VGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 100 ----A~t~~gv~elf~~i~~~l~~~ 120 (238)
+..+.++++|+..|-+.+.++
T Consensus 162 ~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 162 KAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHhc
Confidence 456788999999998888764
No 331
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=92.30 E-value=0.88 Score=42.09 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=54.5
Q ss_pred CceEEEEEE-EC-----CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEcc
Q psy14042 28 DETGLIIVW-ML-----YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSV 100 (238)
Q Consensus 28 ~ad~~IlV~-dv-----d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA 100 (238)
+++..|+|. |- .++.+... ..++++|++ .+.|+++|.||+|-.... ..+...++.+.++.+++.+|+
T Consensus 144 hstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~----~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c 217 (492)
T TIGR02836 144 HSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE----LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDV 217 (492)
T ss_pred cCcEEEEEEcCCCccccccccchHHHHHHHHHHHh----cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEH
Confidence 788888887 43 24455444 679999987 789999999999932221 233345666778899888877
Q ss_pred CC--CCCHHHHHHHHHH
Q psy14042 101 GI--HHNVDELLVGILN 115 (238)
Q Consensus 101 ~t--~~gv~elf~~i~~ 115 (238)
.. .+.|..++..+..
T Consensus 218 ~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 218 ESMRESDILSVLEEVLY 234 (492)
T ss_pred HHcCHHHHHHHHHHHHh
Confidence 53 3445555555543
No 332
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=92.19 E-value=1.2 Score=35.61 Aligned_cols=81 Identities=16% Similarity=0.157 Sum_probs=55.8
Q ss_pred eEEEEEEEe--CCCcccc-cC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHH
Q psy14042 10 GKVRAIIWN--EQYEKLT-SS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDA 84 (238)
Q Consensus 10 ~~v~l~iWD--e~~~~l~-~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~ 84 (238)
..+.+.|.| ..+.... .. .+|.++++...+..+...+..+++.+.+ .+.|+.+|.||.|.... ...+.
T Consensus 91 ~~~d~viiDtpp~~~~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~~---~~~~~ 163 (179)
T cd03110 91 EGAELIIIDGPPGIGCPVIASLTGADAALLVTEPTPSGLHDLERAVELVRH----FGIPVGVVINKYDLNDE---IAEEI 163 (179)
T ss_pred cCCCEEEEECcCCCcHHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHH----cCCCEEEEEeCCCCCcc---hHHHH
Confidence 346677888 2222211 11 8999999988877788888888887765 35678999999997532 23456
Q ss_pred HHHHHhCCCeEEE
Q psy14042 85 KNLAASFKVKFIE 97 (238)
Q Consensus 85 ~~~~~~~~~~~~e 97 (238)
+++.++.+++++.
T Consensus 164 ~~~~~~~~~~vl~ 176 (179)
T cd03110 164 EDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHcCCCeEE
Confidence 6677777887653
No 333
>KOG1424|consensus
Probab=92.14 E-value=0.11 Score=48.48 Aligned_cols=77 Identities=12% Similarity=0.088 Sum_probs=49.4
Q ss_pred CCCcccccC--CceEEEEEEEC-CcchHH--HHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC
Q psy14042 19 EQYEKLTSS--DETGLIIVWML-YKPSYH--RVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV 93 (238)
Q Consensus 19 e~~~~l~~~--~ad~~IlV~dv-d~~s~~--~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~ 93 (238)
|-.|.||.- .+|.+|.+.|+ ++--|. ++..++.++ . .....+|+.||.||....++. .........++
T Consensus 163 E~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~---d--~~K~~~LLvNKaDLl~~~qr~--aWa~YF~~~ni 235 (562)
T KOG1424|consen 163 EIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEV---D--PSKANVLLVNKADLLPPEQRV--AWAEYFRQNNI 235 (562)
T ss_pred HHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhcc---c--cccceEEEEehhhcCCHHHHH--HHHHHHHhcCc
Confidence 445777776 89999999999 654443 222333322 1 456789999999997543321 12223344569
Q ss_pred eEEEEccCC
Q psy14042 94 KFIEVSVGI 102 (238)
Q Consensus 94 ~~~evSA~t 102 (238)
+++.-||..
T Consensus 236 ~~vf~SA~~ 244 (562)
T KOG1424|consen 236 PVVFFSALA 244 (562)
T ss_pred eEEEEeccc
Confidence 999999986
No 334
>KOG0458|consensus
Probab=91.93 E-value=0.99 Score=42.94 Aligned_cols=103 Identities=16% Similarity=0.082 Sum_probs=62.3
Q ss_pred EEECCeEEEEEEEe----CCCcc-cccC--CceEEEEEEECCcchHHHHHH------HHHHHHHhcCCCCCCEEEEEEec
Q psy14042 5 LQGHSGKVRAIIWN----EQYEK-LTSS--DETGLIIVWMLYKPSYHRVEQ------DVIRLHEEGYLRTRPAIIVANKI 71 (238)
Q Consensus 5 i~~~~~~v~l~iWD----e~~~~-l~~~--~ad~~IlV~dvd~~s~~~~~~------~~~~l~~~~~~~~~piilVgNK~ 71 (238)
..++.....+.|.| ..|-+ +... .||++|||.|.....|+.--. -...+.+.- .-.-++++.||.
T Consensus 248 ~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKm 325 (603)
T KOG0458|consen 248 TWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL--GISQLIVAINKM 325 (603)
T ss_pred EEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc--CcceEEEEeecc
Confidence 34456667788999 33322 2222 899999999997766664321 122222222 345688999999
Q ss_pred cCCCccccc----HHHHHHHH-HhCC-----CeEEEEccCCCCCHHHH
Q psy14042 72 DLARARAVS----SQDAKNLA-ASFK-----VKFIEVSVGIHHNVDEL 109 (238)
Q Consensus 72 DL~~~~~v~----~~~~~~~~-~~~~-----~~~~evSA~t~~gv~el 109 (238)
|+.+=.+-- ...+..+. +..| +.|++||+.+|+|+-..
T Consensus 326 D~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 326 DLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 996321111 12233344 3344 46999999999997544
No 335
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=91.21 E-value=1.4 Score=40.16 Aligned_cols=81 Identities=15% Similarity=0.018 Sum_probs=44.5
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc--HHHHHH-------------------
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS--SQDAKN------------------- 86 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~--~~~~~~------------------- 86 (238)
..|..+++...|...-.-.++-+.-+.. -+.|+++|.+|+|+..+..+. .+++.+
T Consensus 226 k~dYglLvVaAddG~~~~tkEHLgi~~a----~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v 301 (527)
T COG5258 226 KVDYGLLVVAADDGVTKMTKEHLGIALA----MELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVV 301 (527)
T ss_pred ccceEEEEEEccCCcchhhhHhhhhhhh----hcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhH
Confidence 5566666655533322222222222221 479999999999996442221 111111
Q ss_pred ---HHHhCC---CeEEEEccCCCCCHHHHHHH
Q psy14042 87 ---LAASFK---VKFIEVSVGIHHNVDELLVG 112 (238)
Q Consensus 87 ---~~~~~~---~~~~evSA~t~~gv~elf~~ 112 (238)
.+-..+ .|+|.+|+.||+|++-|...
T Consensus 302 ~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~ 333 (527)
T COG5258 302 LAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF 333 (527)
T ss_pred HhhhhhhcCCceEEEEEEecccCccHHHHHHH
Confidence 111112 58999999999998755443
No 336
>KOG0468|consensus
Probab=91.15 E-value=0.29 Score=47.31 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=41.8
Q ss_pred CCeEEEEEEEe----CCCcc-cccC--CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 8 HSGKVRAIIWN----EQYEK-LTSS--DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 8 ~~~~v~l~iWD----e~~~~-l~~~--~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
.++++.++|.| -.|.. ++.. -+|++++|+|+ .--.++ ....+...-+ .+.|+++|.||.|.
T Consensus 193 ~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmln-tEr~ikhaiq----~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 193 KGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLN-TERIIKHAIQ----NRLPIVVVINKVDR 261 (971)
T ss_pred cCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceee-HHHHHHHHHh----ccCcEEEEEehhHH
Confidence 46778888999 33332 2222 79999999999 444444 3444444433 67999999999996
No 337
>KOG0090|consensus
Probab=91.10 E-value=1 Score=37.79 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=49.8
Q ss_pred CceEEEEEEEC--CcchHHHHHHHHHHHHHhcC--CCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCC
Q psy14042 28 DETGLIIVWML--YKPSYHRVEQDVIRLHEEGY--LRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIH 103 (238)
Q Consensus 28 ~ad~~IlV~dv--d~~s~~~~~~~~~~l~~~~~--~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~ 103 (238)
.+-++|+|.|. ......++..++-.+.-... .+.+|++++-||.|+ .-|++.
T Consensus 108 ~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl------------------------~tAkt~ 163 (238)
T KOG0090|consen 108 SAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDL------------------------FTAKTA 163 (238)
T ss_pred cceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhh------------------------hhcCcH
Confidence 67788888877 45555666555555544442 378899999999998 567777
Q ss_pred CCHHHHHHHHHHHHHhhhc
Q psy14042 104 HNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 104 ~gv~elf~~i~~~l~~~~~ 122 (238)
+-|...++.=+..+++.+.
T Consensus 164 ~~Ir~~LEkEi~~lr~sRs 182 (238)
T KOG0090|consen 164 EKIRQQLEKEIHKLRESRS 182 (238)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7777777777777766654
No 338
>KOG0273|consensus
Probab=91.04 E-value=0.95 Score=41.82 Aligned_cols=80 Identities=25% Similarity=0.446 Sum_probs=62.5
Q ss_pred ceEEeecccCc-eeeeccc--------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeE
Q psy14042 145 SAVIVGSVDGN-RIWGKEF--------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEI 214 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~--------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i 214 (238)
.+...|+.+|. |+|-+.= .+..+....|+-.+..++-|..+|.+.+||.+ |....+..+++.+ =
T Consensus 248 ~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~------~ 321 (524)
T KOG0273|consen 248 TLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP------A 321 (524)
T ss_pred CeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC------c
Confidence 45568888998 9997752 12388999999999999999999999999995 8888899998544 3
Q ss_pred EEEEeecCCCcccccc
Q psy14042 215 AALKYYLNRTSARSLN 230 (238)
Q Consensus 215 ~~~~w~~~~~~~~~~~ 230 (238)
..++|-.+.+=..+.+
T Consensus 322 lDVdW~~~~~F~ts~t 337 (524)
T KOG0273|consen 322 LDVDWQSNDEFATSST 337 (524)
T ss_pred cceEEecCceEeecCC
Confidence 5678887766444333
No 339
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=90.79 E-value=0.52 Score=25.33 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=24.5
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEe
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYD 192 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d 192 (238)
.+....|.+.+..+..|..+|.+++||
T Consensus 14 ~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 14 PVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 677889999999999999999999986
No 340
>KOG1538|consensus
Probab=90.76 E-value=0.77 Score=44.37 Aligned_cols=56 Identities=18% Similarity=0.300 Sum_probs=46.3
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeecCCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLNRT 224 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~~~ 224 (238)
.+.+..|++|++.+.+|..||+|.+-+..|..--++.-+-++ +++|-+|.|..+++
T Consensus 134 R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~---Nspiwsi~~~p~sg 189 (1081)
T KOG1538|consen 134 RIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGS---NSPIWSICWNPSSG 189 (1081)
T ss_pred eEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCC---CCCceEEEecCCCC
Confidence 577889999999999999999999999999987777765444 45788888877655
No 341
>KOG0082|consensus
Probab=90.63 E-value=1.7 Score=39.17 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=65.6
Q ss_pred EEEEEEe---CCC-cccccC---CceEEEEEEEC---Ccch--------HHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 12 VRAIIWN---EQY-EKLTSS---DETGLIIVWML---YKPS--------YHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 12 v~l~iWD---e~~-~~l~~~---~ad~~IlV~dv---d~~s--------~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
..+.+.| .|- |.=|.+ +++++|+|.++ |.-. ......+.+.+....--.+.++||..||.||
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL 274 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence 6778888 111 222222 99999999988 3222 2222334444444332368999999999998
Q ss_pred CCc--------------ccc-cHHHHHHH--------HHhC--CCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 74 ARA--------------RAV-SSQDAKNL--------AASF--KVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 74 ~~~--------------~~v-~~~~~~~~--------~~~~--~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
-.+ ... ..+++..+ .+.. .+-+..+.|..-.+|+.+|..+...+....
T Consensus 275 FeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 275 FEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN 347 (354)
T ss_pred HHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 221 111 12222222 1111 233567788899999999999998887654
No 342
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=90.41 E-value=0.65 Score=43.53 Aligned_cols=61 Identities=21% Similarity=0.209 Sum_probs=46.9
Q ss_pred CCCEEEEEEeccCCC----ccc-------ccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 61 TRPAIIVANKIDLAR----ARA-------VSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 61 ~~piilVgNK~DL~~----~~~-------v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
.+|++||.+|+|.-. +.. .....++.++-.+|+..|.||++...+++-++..|...+....
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~~ 267 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGFP 267 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccCC
Confidence 379999999999731 111 1223477888999999999999999999999988887775543
No 343
>KOG0466|consensus
Probab=89.91 E-value=0.32 Score=42.96 Aligned_cols=59 Identities=22% Similarity=0.318 Sum_probs=45.0
Q ss_pred CCEEEEEEeccCCCccccc--HHHHHHHHHh---CCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 62 RPAIIVANKIDLARARAVS--SQDAKNLAAS---FKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 62 ~piilVgNK~DL~~~~~v~--~~~~~~~~~~---~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
..++++-||+||..+.+.. .+++..|.+- .+.|.+.+||+.+.|++-+.+.|++.++.-
T Consensus 180 khiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP 243 (466)
T KOG0466|consen 180 KHIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP 243 (466)
T ss_pred ceEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence 4689999999997544332 2455566553 367999999999999999999999877543
No 344
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=89.90 E-value=2 Score=34.79 Aligned_cols=52 Identities=15% Similarity=0.339 Sum_probs=39.4
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLNR 223 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~~ 223 (238)
.+....|+|++..+..|..+|.|++||.. |..+..+..+ ..+|.++.|....
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~------~~~i~~~~~~~~~ 189 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH------TGEVNSVAFSPDG 189 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecC------ccccceEEECCCc
Confidence 57788999998888888889999999986 6656555533 3467777776653
No 345
>KOG2106|consensus
Probab=89.80 E-value=1.3 Score=41.51 Aligned_cols=76 Identities=20% Similarity=0.319 Sum_probs=57.5
Q ss_pred ceEEeecccCc-eeeeccc--------ceeeeEEEEeCCCCCeEEEEeeCceEEEEe--CCCCeeeeeeeecCCCCCcee
Q psy14042 145 SAVIVGSVDGN-RIWGKEF--------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYD--YEGNFMNKVSMWSGPGSEMGE 213 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~--------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d--~~g~~~~~~~~~~~~~~~~~~ 213 (238)
+..++|...|. -|...+- +..++..+.++|+++.+-.|+.++-|+||- .+|+.+.++....+ ++
T Consensus 419 g~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g-----s~ 493 (626)
T KOG2106|consen 419 GVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG-----SP 493 (626)
T ss_pred ceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC-----ce
Confidence 56667777765 3322221 123678889999999999999999999985 47888999998854 79
Q ss_pred EEEEEeecCCCc
Q psy14042 214 IAALKYYLNRTS 225 (238)
Q Consensus 214 i~~~~w~~~~~~ 225 (238)
|..++|-.+..=
T Consensus 494 ithLDwS~Ds~~ 505 (626)
T KOG2106|consen 494 ITHLDWSSDSQF 505 (626)
T ss_pred eEEeeecCCCce
Confidence 999999876553
No 346
>KOG1274|consensus
Probab=89.68 E-value=1.1 Score=44.33 Aligned_cols=73 Identities=8% Similarity=0.151 Sum_probs=52.2
Q ss_pred ecceEEeecccCc---eeeecccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEe
Q psy14042 143 RASAVIVGSVDGN---RIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKY 219 (238)
Q Consensus 143 ~~~~~~~~~~~g~---rv~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w 219 (238)
+..+++....... .+.++.... .+..+.|+|.++.+--|+.+|+|.|||.+-... + .....|.++.|
T Consensus 209 d~~Vkvy~r~~we~~f~Lr~~~~ss-~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~----~~~~~Vc~~aw 278 (933)
T KOG1274|consen 209 DNTVKVYSRKGWELQFKLRDKLSSS-KFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-----H----EFKRAVCCEAW 278 (933)
T ss_pred CCeEEEEccCCceeheeeccccccc-ceEEEEEcCCCcEEeeeccCCcEEEEecccchh-----c----cccceeEEEec
Confidence 3344444443332 455666664 688999999999999999999999999986111 1 22557899999
Q ss_pred ecCCCc
Q psy14042 220 YLNRTS 225 (238)
Q Consensus 220 ~~~~~~ 225 (238)
..+..+
T Consensus 279 ~p~~n~ 284 (933)
T KOG1274|consen 279 KPNANA 284 (933)
T ss_pred CCCCCe
Confidence 887776
No 347
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=89.64 E-value=4.4 Score=32.83 Aligned_cols=90 Identities=14% Similarity=0.154 Sum_probs=68.7
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV 106 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv 106 (238)
..|.++++.|+ ..-|++.++.=+..+...- ---.+.++++-..-.+...+..++..+++..+.+|++.+--.+.++.
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~f--flGKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~ 141 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSF--FLGKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGR 141 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhh--hccceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHH
Confidence 78999999999 8889998876555442211 12345566666666666778889999999999999999988888888
Q ss_pred HHHHHHHHHHHHh
Q psy14042 107 DELLVGILNQIRL 119 (238)
Q Consensus 107 ~elf~~i~~~l~~ 119 (238)
..+-++|.+.+.-
T Consensus 142 ~~lAqRLL~~lqi 154 (176)
T PF11111_consen 142 TSLAQRLLRMLQI 154 (176)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777653
No 348
>KOG0305|consensus
Probab=89.58 E-value=0.7 Score=43.29 Aligned_cols=53 Identities=15% Similarity=0.337 Sum_probs=42.6
Q ss_pred eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 165 TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 165 ~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
..+..+.|++++..+-+|+.+|.|.|||.. -+.+..+..+ ....|.+|.|...
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~-----h~~rvg~laW~~~ 271 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS-----HASRVGSLAWNSS 271 (484)
T ss_pred CceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC-----cCceeEEEeccCc
Confidence 377889999999999999999999999974 3445555552 3778999999843
No 349
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=89.18 E-value=2.9 Score=39.60 Aligned_cols=81 Identities=10% Similarity=0.203 Sum_probs=51.6
Q ss_pred ceEEeecccCc-eeeecccce-------eeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecC--CC------
Q psy14042 145 SAVIVGSVDGN-RIWGKEFKK-------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSG--PG------ 208 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~~~-------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~--~~------ 208 (238)
...++|-.||. .++...-.- +......|.|+++++..|...||+++||.-=+.+.---+.-. |.
T Consensus 272 ~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls 351 (545)
T PF11768_consen 272 DKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLS 351 (545)
T ss_pred ceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeee
Confidence 34456777776 666543221 234556899999999999999999999985444321111111 11
Q ss_pred ---CCceeEEEEEeecCCCc
Q psy14042 209 ---SEMGEIAALKYYLNRTS 225 (238)
Q Consensus 209 ---~~~~~i~~~~w~~~~~~ 225 (238)
.....++.|+|......
T Consensus 352 ~yf~~~~~L~~iqW~~~~~~ 371 (545)
T PF11768_consen 352 KYFRVSSSLVHIQWAPAPQL 371 (545)
T ss_pred hhccCcchhheeEeccCCCc
Confidence 12668999999955443
No 350
>PTZ00416 elongation factor 2; Provisional
Probab=89.13 E-value=0.46 Score=47.74 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=38.4
Q ss_pred EEEEEEEe----CCCcc-cccC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 11 KVRAIIWN----EQYEK-LTSS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 11 ~v~l~iWD----e~~~~-l~~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
...+.+.| .+|.. +... .+|++|+|.|.....-...+..+..+.+ .+.|++++.||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 56788899 33322 2222 8999999999832222222333444443 468999999999996
No 351
>KOG0284|consensus
Probab=88.22 E-value=0.58 Score=42.51 Aligned_cols=57 Identities=23% Similarity=0.393 Sum_probs=44.1
Q ss_pred ccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCC-CeeeeeeeecCCCCCceeEEEEEeecCCC
Q psy14042 161 EFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEG-NFMNKVSMWSGPGSEMGEIAALKYYLNRT 224 (238)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g-~~~~~~~~~~~~~~~~~~i~~~~w~~~~~ 224 (238)
+.+ ..+..+.|+|+++.++.|+.+||+-+|+-.+ +|-..+.-| +.+|-+|+|-.+.+
T Consensus 94 Kvk-c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaH------Ds~Vr~m~ws~~g~ 151 (464)
T KOG0284|consen 94 KVK-CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAH------DSPVRTMKWSHNGT 151 (464)
T ss_pred ccc-cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhh------cccceeEEEccCCC
Confidence 345 4889999999999999999999999999842 222233333 77899999987654
No 352
>KOG1446|consensus
Probab=88.16 E-value=1.4 Score=38.57 Aligned_cols=43 Identities=16% Similarity=0.392 Sum_probs=36.9
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPG 208 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~ 208 (238)
.....+|||+++.++++|..|.+++.|+ .|..+..+..+...+
T Consensus 189 ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~ 232 (311)
T KOG1446|consen 189 EWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG 232 (311)
T ss_pred ceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC
Confidence 4456789999999999999999999999 799888888776544
No 353
>PTZ00421 coronin; Provisional
Probab=87.75 E-value=4.3 Score=38.33 Aligned_cols=69 Identities=23% Similarity=0.321 Sum_probs=46.4
Q ss_pred eEEeecccCc-eeeecc-----------------cceeeeEEEEeCCCC-CeEEEEeeCceEEEEeCC-CCeeeeeeeec
Q psy14042 146 AVIVGSVDGN-RIWGKE-----------------FKKTSMLGVQWTSDS-QNLLFAIKGGQVHLYDYE-GNFMNKVSMWS 205 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~-----------------~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~ 205 (238)
..+.++.||. ++|.-. -.+ .+..+.|+|++ .++..|..+|.|+|||.. |..+..+.-+
T Consensus 90 ~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~-~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h- 167 (493)
T PTZ00421 90 KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK-KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH- 167 (493)
T ss_pred EEEEEeCCCEEEEEecCCCccccccCcceEEecCCCC-cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC-
Confidence 4556777887 888532 122 56778999986 678889999999999975 5544444322
Q ss_pred CCCCCceeEEEEEeec
Q psy14042 206 GPGSEMGEIAALKYYL 221 (238)
Q Consensus 206 ~~~~~~~~i~~~~w~~ 221 (238)
...|-++.|..
T Consensus 168 -----~~~V~sla~sp 178 (493)
T PTZ00421 168 -----SDQITSLEWNL 178 (493)
T ss_pred -----CCceEEEEEEC
Confidence 23566777754
No 354
>KOG4273|consensus
Probab=87.58 E-value=1.9 Score=37.12 Aligned_cols=70 Identities=14% Similarity=0.190 Sum_probs=45.8
Q ss_pred EEeCCCcccccC--CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCcccccHHHHHHHHH
Q psy14042 16 IWNEQYEKLTSS--DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARAVSSQDAKNLAA 89 (238)
Q Consensus 16 iWDe~~~~l~~~--~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~v~~~~~~~~~~ 89 (238)
|.||+|-.-... -..++++|||+ ....+..++.|+..- +.+..- .+.+|||.|.....-...+..+++++
T Consensus 64 icde~~lpn~~~a~pl~a~vmvfdlse~s~l~alqdwl~ht----dinsfdillcignkvdrvphhlahdeyrrrl~k 137 (418)
T KOG4273|consen 64 ICDEKFLPNAEIAEPLQAFVMVFDLSEKSGLDALQDWLPHT----DINSFDILLCIGNKVDRVPHHLAHDEYRRRLAK 137 (418)
T ss_pred ccchhccCCcccccceeeEEEEEeccchhhhHHHHhhcccc----ccccchhheecccccccccchhhhhHHHHHHHh
Confidence 445777655444 77899999999 788899999998742 123333 56789999976444334444444444
No 355
>KOG0288|consensus
Probab=87.55 E-value=1.3 Score=40.34 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=42.9
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecCCCc
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLNRTS 225 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~~~~ 225 (238)
-..++.|||++..+.-|+.+|.|+||+.. |+...++..+ ++ ..-|-++.|.....+
T Consensus 389 DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s---~s-~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 389 DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS---TS-NAAITSLSWNPSGSG 445 (459)
T ss_pred ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC---CC-CcceEEEEEcCCCch
Confidence 35678999999999999999999999997 4555566554 22 236999999875443
No 356
>KOG2484|consensus
Probab=87.53 E-value=1.3 Score=40.35 Aligned_cols=71 Identities=20% Similarity=0.105 Sum_probs=45.2
Q ss_pred CceEEEEEEEC-CcchHHH--HHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCC
Q psy14042 28 DETGLIIVWML-YKPSYHR--VEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHH 104 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~--~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~ 104 (238)
-+|++|-|.|. |+.+-.. ++.|+ .+. ..+...|||.||+||... ++-..+...|.+++..-.|-+|.....
T Consensus 146 ~sDVVleVlDARDPlgtR~~~vE~~V---~~~--~gnKkLILVLNK~DLVPr-Ev~e~Wl~YLr~~~ptv~fkast~~~~ 219 (435)
T KOG2484|consen 146 ASDVVLEVLDARDPLGTRCPEVEEAV---LQA--HGNKKLILVLNKIDLVPR-EVVEKWLVYLRREGPTVAFKASTQMQN 219 (435)
T ss_pred hhheEEEeeeccCCCCCCChhHHHHH---Hhc--cCCceEEEEeehhccCCH-HHHHHHHHHHHhhCCcceeeccccccc
Confidence 78999999999 8755432 22222 111 255889999999999653 334456666666665555555555443
No 357
>KOG0266|consensus
Probab=87.52 E-value=2.8 Score=39.03 Aligned_cols=61 Identities=26% Similarity=0.441 Sum_probs=46.9
Q ss_pred eEEeecccCc-eeeecccc-e---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecC
Q psy14042 146 AVIVGSVDGN-RIWGKEFK-K---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSG 206 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~-~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~ 206 (238)
..+.++.|++ |+|.-.-. + ..+..+.|+|++.++..|..+|.|+|||.. |..+.++..+..
T Consensus 217 ~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~ 289 (456)
T KOG0266|consen 217 YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD 289 (456)
T ss_pred EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC
Confidence 4555677777 88877222 1 145677999999999999999999999997 677888887754
No 358
>KOG0286|consensus
Probab=87.48 E-value=1.1 Score=39.24 Aligned_cols=40 Identities=20% Similarity=0.445 Sum_probs=35.7
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeec
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWS 205 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~ 205 (238)
.+...+|++|.+.+.-++.+|.+.|||+. +|.++-+.|+|
T Consensus 57 Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s 97 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS 97 (343)
T ss_pred ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCc
Confidence 67889999999999999999999999995 77788777765
No 359
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=87.13 E-value=2.5 Score=34.21 Aligned_cols=52 Identities=13% Similarity=0.264 Sum_probs=37.9
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCC-eeeeeeeecCCCCCceeEEEEEeecCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGN-FMNKVSMWSGPGSEMGEIAALKYYLNR 223 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~-~~~~~~~~~~~~~~~~~i~~~~w~~~~ 223 (238)
.+....|+|++..+.+|..+|.+.+||.... ....+..+ ..++..+.|....
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~------~~~i~~~~~~~~~ 63 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH------TGPVRDVAASADG 63 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC------CcceeEEEECCCC
Confidence 7888999999999999999999999998644 33333322 3345566666543
No 360
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=86.82 E-value=0.84 Score=45.92 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=38.6
Q ss_pred EEEEEEEe----CCCcc-cccC--CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 11 KVRAIIWN----EQYEK-LTSS--DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 11 ~v~l~iWD----e~~~~-l~~~--~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
.+.+.+.| ..|.. +... .+|++|+|.|. .--.... +..+..+.. .+.|++++.||+|+.
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence 57788999 44432 2222 89999999998 4322222 222333333 678999999999986
No 361
>KOG1143|consensus
Probab=86.80 E-value=4.9 Score=36.71 Aligned_cols=94 Identities=16% Similarity=0.123 Sum_probs=59.3
Q ss_pred EEEEe----CCCcccccC-----CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc-----
Q psy14042 14 AIIWN----EQYEKLTSS-----DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV----- 79 (238)
Q Consensus 14 l~iWD----e~~~~l~~~-----~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v----- 79 (238)
+.+.| .+|.+.+-. -.+.+++|.+.++.--...++-+..+.. -++|++++.+|.||.....+
T Consensus 251 vTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~A----L~iPfFvlvtK~Dl~~~~~~~~tv~ 326 (591)
T KOG1143|consen 251 VTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAA----LNIPFFVLVTKMDLVDRQGLKKTVK 326 (591)
T ss_pred EEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHH----hCCCeEEEEEeeccccchhHHHHHH
Confidence 45666 566554433 6788888888765444444444555544 67999999999999654211
Q ss_pred -------------------cHHHHHHHHHh----CCCeEEEEccCCCCCHHHHHH
Q psy14042 80 -------------------SSQDAKNLAAS----FKVKFIEVSVGIHHNVDELLV 111 (238)
Q Consensus 80 -------------------~~~~~~~~~~~----~~~~~~evSA~t~~gv~elf~ 111 (238)
..+++-..+++ .-.|+|.+|+.+|+|++-+..
T Consensus 327 ~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~ 381 (591)
T KOG1143|consen 327 DLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT 381 (591)
T ss_pred HHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence 12233333333 225899999999999875433
No 362
>PTZ00421 coronin; Provisional
Probab=86.53 E-value=4.4 Score=38.27 Aligned_cols=59 Identities=17% Similarity=0.344 Sum_probs=43.8
Q ss_pred eEEeecccCc-eeeecccc---------eeeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeee
Q psy14042 146 AVIVGSVDGN-RIWGKEFK---------KTSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMW 204 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~---------~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~ 204 (238)
..+.++.||. ++|.-+-. ...+..+.|+|++..+..|..+|.|++||. .|..+..+..+
T Consensus 140 iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H 209 (493)
T PTZ00421 140 VLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH 209 (493)
T ss_pred EEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence 4556677887 88864311 114778899999999999999999999997 47766655544
No 363
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=86.41 E-value=1.9 Score=37.26 Aligned_cols=94 Identities=15% Similarity=0.051 Sum_probs=52.8
Q ss_pred CceEEEEEEEC-C---c---ch--HHHHHHHHHHHHHhcC--CCCCCEEEEEEeccCCCc-ccccH-HHHHHHHHhCCCe
Q psy14042 28 DETGLIIVWML-Y---K---PS--YHRVEQDVIRLHEEGY--LRTRPAIIVANKIDLARA-RAVSS-QDAKNLAASFKVK 94 (238)
Q Consensus 28 ~ad~~IlV~dv-d---~---~s--~~~~~~~~~~l~~~~~--~~~~piilVgNK~DL~~~-~~v~~-~~~~~~~~~~~~~ 94 (238)
..+|+|++.++ + . +. -...+.+...|.+... .-..|+.||.+|+|+... .+... -..+...+-+|+.
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~GF~ef~~~L~~~~r~q~lG~t 104 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPGFDEFFSDLSEEEREQVLGFT 104 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccCHHHHHHhCCHHHHhCCcccc
Confidence 56999999988 3 1 11 2223444444443322 268999999999998532 11100 0112222345655
Q ss_pred EEEEccCCCCC---HHHHHHHHHHHHHhhh
Q psy14042 95 FIEVSVGIHHN---VDELLVGILNQIRLKR 121 (238)
Q Consensus 95 ~~evSA~t~~g---v~elf~~i~~~l~~~~ 121 (238)
+-......... +++.|..+...+....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 134 (266)
T PF14331_consen 105 FPYDEDADGDAWAWFDEEFDELVARLNARV 134 (266)
T ss_pred cCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 44344444444 7788888877776554
No 364
>KOG1523|consensus
Probab=86.19 E-value=2.1 Score=37.90 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=45.2
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCe----eeeeeeecCCCCCceeEEEEEeecCCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNF----MNKVSMWSGPGSEMGEIAALKYYLNRT 224 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~----~~~~~~~~~~~~~~~~i~~~~w~~~~~ 224 (238)
.+.+..|++|...+-++..+.|||||...|+- .+.+++| ...+.+|+|-....
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~H------d~~vtgvdWap~sn 68 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEH------DKIVTGVDWAPKSN 68 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhh------CcceeEEeecCCCC
Confidence 78899999999999999999999999998887 4566666 56788999986553
No 365
>KOG1273|consensus
Probab=86.12 E-value=2 Score=38.06 Aligned_cols=52 Identities=13% Similarity=0.373 Sum_probs=45.7
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCceeEEEEEeecCCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMGEIAALKYYLNRT 224 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~~i~~~~w~~~~~ 224 (238)
.+.+..||+|+..++-++.+-.|.+||- .|..+.++.+. +||-+..|+....
T Consensus 67 pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~-------spv~~~q~hp~k~ 119 (405)
T KOG1273|consen 67 PITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD-------SPVWGAQWHPRKR 119 (405)
T ss_pred ceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEcc-------CccceeeeccccC
Confidence 7889999999999999999999999998 69999999886 5788888887544
No 366
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=84.73 E-value=0.086 Score=36.04 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=27.4
Q ss_pred EEeecccCc-eeeecccceeeeEEEEeCCCCCeEEEE
Q psy14042 147 VIVGSVDGN-RIWGKEFKKTSMLGVQWTSDSQNLLFA 182 (238)
Q Consensus 147 ~~~~~~~g~-rv~g~~~~~~~~~~~~~~~~~~~~~~g 182 (238)
.|....+|. +|.|+.+++ .+.+++|+.++++.+|.
T Consensus 2 ~I~~~~~g~~~V~g~~ie~-~~~~~~~~~~e~~~rf~ 37 (69)
T PF09269_consen 2 EIEREDEGVFVVEGPKIER-LVAMTNFDDEESLRRFQ 37 (69)
T ss_dssp EEEEEETTEEEEE-HHHHH-HHTTEEE-TGGGHHHHH
T ss_pred EEEEcCCceEEEEChHHHH-HHHhcCCCCHHHHHHHH
Confidence 455566787 999999998 99999999999987763
No 367
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=83.48 E-value=3.6 Score=33.59 Aligned_cols=51 Identities=14% Similarity=0.329 Sum_probs=35.4
Q ss_pred eeEEEEeCCCCCeEEEEe---eCceEEEEeCCC-CeeeeeeeecCCCCCceeEEEEEeecCCC
Q psy14042 166 SMLGVQWTSDSQNLLFAI---KGGQVHLYDYEG-NFMNKVSMWSGPGSEMGEIAALKYYLNRT 224 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~---~~g~~~~~d~~g-~~~~~~~~~~~~~~~~~~i~~~~w~~~~~ 224 (238)
....+.|+|+++.+.+|. .+|++.+||..- ..+.+. +......++|.....
T Consensus 102 ~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~--------~~~~~t~~~WsPdGr 156 (194)
T PF08662_consen 102 PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF--------EHSDATDVEWSPDGR 156 (194)
T ss_pred CceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc--------ccCcEEEEEEcCCCC
Confidence 566789999999999864 468999999972 222222 123467888976543
No 368
>KOG1486|consensus
Probab=83.25 E-value=6.9 Score=33.92 Aligned_cols=57 Identities=30% Similarity=0.367 Sum_probs=44.5
Q ss_pred CCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhccc
Q psy14042 61 TRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLV 124 (238)
Q Consensus 61 ~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~ 124 (238)
-++++-|-||+| +++.++..++|.+-+ .+-+|+....|++.+++.+.+.+...+.-.
T Consensus 238 Y~~ClYvYnKID-----~vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l~L~rvYt 294 (364)
T KOG1486|consen 238 YIKCLYVYNKID-----QVSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEELNLVRVYT 294 (364)
T ss_pred EEEEEEEeeccc-----eecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHhceEEEEe
Confidence 468899999998 466777777776543 344789999999999999999987666443
No 369
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=83.21 E-value=14 Score=29.81 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=49.2
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHH
Q psy14042 41 PSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113 (238)
Q Consensus 41 ~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i 113 (238)
+-...+..|++++++.- ...-++||-|-.-... .....+++.+++.+|++++.-+++..-+.+++...+
T Consensus 59 ~i~~~~~~~~~~l~~~~--~~~~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~h~~kKP~~~~~i~~~~ 127 (168)
T PF09419_consen 59 EIPPEYAEWLNELKKQF--GKDRVLIVSNSAGSSD--DPDGERAEALEKALGIPVLRHRAKKPGCFREILKYF 127 (168)
T ss_pred cCCHHHHHHHHHHHHHC--CCCeEEEEECCCCccc--CccHHHHHHHHHhhCCcEEEeCCCCCccHHHHHHHH
Confidence 44567888999998743 2235899999763322 234568888999999999999998886666555544
No 370
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=82.76 E-value=12 Score=32.06 Aligned_cols=75 Identities=19% Similarity=0.170 Sum_probs=51.0
Q ss_pred EEEEEEe-----CCCcccccCCceEEEEEEECCcchHHHHHHHHHHHHHhcCCCC-CCEEEEEEeccCCCcccccHHHHH
Q psy14042 12 VRAIIWN-----EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRT-RPAIIVANKIDLARARAVSSQDAK 85 (238)
Q Consensus 12 v~l~iWD-----e~~~~l~~~~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~-~piilVgNK~DL~~~~~v~~~~~~ 85 (238)
..+.|.| |+|-.=+..++|.+|+|.|....|+...+...+...+ -+ .++.+|.||.|-. .....
T Consensus 134 ~e~VivDtEAGiEHfgRg~~~~vD~vivVvDpS~~sl~taeri~~L~~e----lg~k~i~~V~NKv~e~------e~~~~ 203 (255)
T COG3640 134 YEVVIVDTEAGIEHFGRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEE----LGIKRIFVVLNKVDEE------EELLR 203 (255)
T ss_pred CcEEEEecccchhhhccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHH----hCCceEEEEEeeccch------hHHHH
Confidence 4567788 7775544449999999999877788777665554433 34 7899999999843 23445
Q ss_pred HHHHhCCCeEE
Q psy14042 86 NLAASFKVKFI 96 (238)
Q Consensus 86 ~~~~~~~~~~~ 96 (238)
..+...+.++.
T Consensus 204 ~~~~~~~~~vl 214 (255)
T COG3640 204 ELAEELGLEVL 214 (255)
T ss_pred hhhhccCCeEE
Confidence 55556665443
No 371
>KOG0272|consensus
Probab=82.68 E-value=3.8 Score=37.51 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=45.3
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCceeEEEEEeecCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMGEIAALKYYLNR 223 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~~i~~~~w~~~~ 223 (238)
.+..+.++.++..+.-|+=+|.+.||.. +++.+.++.=| ...+.++.||...
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH------~~~v~~~~fhP~~ 229 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGH------TSRVGAAVFHPVD 229 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecc------ccceeeEEEccCC
Confidence 7788899999999999999999999999 57777766655 6789999999885
No 372
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=82.12 E-value=4.2 Score=29.70 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=26.2
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEe
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANK 70 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK 70 (238)
.+|++++|++.+...-+....++.+++ .+.|+++|.||
T Consensus 79 ~~d~ii~vv~~~~~~~~~~~~~~~~l~-----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPITEDDKNILRELK-----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSHHHHHHHHHHHH-----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCCHHHHHHHHHHh-----cCCCEEEEEcC
Confidence 899999999983321133344445552 67999999998
No 373
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=81.33 E-value=4.5 Score=34.51 Aligned_cols=43 Identities=16% Similarity=0.046 Sum_probs=25.8
Q ss_pred ceEEEEEEEC--CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042 29 ETGLIIVWML--YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA 76 (238)
Q Consensus 29 ad~~IlV~dv--d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~ 76 (238)
.+.+++|.|. +.... +...+...+.. ...|+++|.||+|....
T Consensus 163 ~~IIL~Vvda~~d~~~~-d~l~ia~~ld~----~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 163 ECLILAVTPANVDLANS-DALKLAKEVDP----QGERTIGVITKLDLMDE 207 (240)
T ss_pred cCeEEEEEECCCCCCch-hHHHHHHHHHH----cCCcEEEEEECCCCCCc
Confidence 3466777766 22222 22233333333 67899999999998753
No 374
>PTZ00258 GTP-binding protein; Provisional
Probab=79.99 E-value=4.1 Score=37.34 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=30.6
Q ss_pred CCCCEEEEEEec--cCCCcccccHHHHHHHHHhC-CCeEEEEccCCCC
Q psy14042 60 RTRPAIIVANKI--DLARARAVSSQDAKNLAASF-KVKFIEVSVGIHH 104 (238)
Q Consensus 60 ~~~piilVgNK~--DL~~~~~v~~~~~~~~~~~~-~~~~~evSA~t~~ 104 (238)
...|+++|+||. |+.....-..+.+.+++... +.+++.+||+...
T Consensus 219 t~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~ 266 (390)
T PTZ00258 219 TAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEE 266 (390)
T ss_pred hcCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence 468999999999 87222222334556666666 5889999986553
No 375
>KOG2321|consensus
Probab=79.94 E-value=5.4 Score=38.07 Aligned_cols=53 Identities=15% Similarity=0.151 Sum_probs=38.0
Q ss_pred eEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeecCC
Q psy14042 167 MLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLNR 223 (238)
Q Consensus 167 ~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~~ 223 (238)
+..+.|++++=.+-.||.+|.|+|||-.-.--.-++-| ....||.-|+|....
T Consensus 231 vTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh----~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 231 VTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDH----GYELPIKKLDWQDTD 283 (703)
T ss_pred ceEEEecCCceeEEeeccCCcEEEEEcccCCceeeccc----CCccceeeecccccC
Confidence 66678888888899999999999999864332212211 126789999997663
No 376
>KOG0266|consensus
Probab=79.65 E-value=13 Score=34.51 Aligned_cols=74 Identities=22% Similarity=0.374 Sum_probs=50.0
Q ss_pred eEEeecccCc-eeeecccc---------eeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCce-eE
Q psy14042 146 AVIVGSVDGN-RIWGKEFK---------KTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMG-EI 214 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~---------~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~-~i 214 (238)
..+.++.|+. |+|.-+-. ...+...++++++..+.-+..+|.|+|||..+..... +....+.+.. ++
T Consensus 260 ~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~--~~~~~~~~~~~~~ 337 (456)
T KOG0266|consen 260 LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLC--LKLLSGAENSAPV 337 (456)
T ss_pred EEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceee--eecccCCCCCCce
Confidence 5566788887 99976531 1256677899999999999999999999998665321 1112222222 66
Q ss_pred EEEEeec
Q psy14042 215 AALKYYL 221 (238)
Q Consensus 215 ~~~~w~~ 221 (238)
-.+.|..
T Consensus 338 ~~~~fsp 344 (456)
T KOG0266|consen 338 TSVQFSP 344 (456)
T ss_pred eEEEECC
Confidence 6666643
No 377
>KOG0318|consensus
Probab=79.47 E-value=5.8 Score=37.37 Aligned_cols=74 Identities=24% Similarity=0.393 Sum_probs=54.2
Q ss_pred ceEEeecccCc-ee---eecccc--------eeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeee--eeeeecCCCCC
Q psy14042 145 SAVIVGSVDGN-RI---WGKEFK--------KTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMN--KVSMWSGPGSE 210 (238)
Q Consensus 145 ~~~~~~~~~g~-rv---~g~~~~--------~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~--~~~~~~~~~~~ 210 (238)
..+.+|..||+ .+ .|.++. +..+..+.+|||++.+--|.+++++.+||..-.++. .+.+|
T Consensus 456 ~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FH------ 529 (603)
T KOG0318|consen 456 SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFH------ 529 (603)
T ss_pred CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeee------
Confidence 45567777776 32 232211 125677899999999999999999999999887763 33344
Q ss_pred ceeEEEEEeecCCC
Q psy14042 211 MGEIAALKYYLNRT 224 (238)
Q Consensus 211 ~~~i~~~~w~~~~~ 224 (238)
..+|.+|.|..+.+
T Consensus 530 takI~~~aWsP~n~ 543 (603)
T KOG0318|consen 530 TAKINCVAWSPNNK 543 (603)
T ss_pred eeeEEEEEeCCCce
Confidence 67899999998765
No 378
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=79.07 E-value=10 Score=33.01 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=47.2
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEE
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFI 96 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~ 96 (238)
++|.+|+|=-..+..+.+++..++-+.. -++|..+|.||.++-.. +.++++.+.|++++
T Consensus 185 ~aD~ai~VTEPTp~glhD~kr~~el~~~----f~ip~~iViNr~~~g~s------~ie~~~~e~gi~il 243 (284)
T COG1149 185 GADLAILVTEPTPFGLHDLKRALELVEH----FGIPTGIVINRYNLGDS------EIEEYCEEEGIPIL 243 (284)
T ss_pred cCCEEEEEecCCccchhHHHHHHHHHHH----hCCceEEEEecCCCCch------HHHHHHHHcCCCee
Confidence 9999999866678888998888888776 56999999999965431 67788888887754
No 379
>PTZ00420 coronin; Provisional
Probab=78.98 E-value=17 Score=35.06 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=37.7
Q ss_pred eEEeecccCc-eeeeccc------------------ceeeeEEEEeCCCCCeEE-EEeeCceEEEEeCC-CCeeee
Q psy14042 146 AVIVGSVDGN-RIWGKEF------------------KKTSMLGVQWTSDSQNLL-FAIKGGQVHLYDYE-GNFMNK 200 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~------------------~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~d~~-g~~~~~ 200 (238)
..+.++.||. ++|.-.- .+ .+..+.|+|++..++ .|..+|.|.|||.. |..+..
T Consensus 89 lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~-~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~ 163 (568)
T PTZ00420 89 ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK-KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ 163 (568)
T ss_pred EEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC-cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE
Confidence 4456677777 8886321 22 577889999987654 67889999999985 444433
No 380
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=78.92 E-value=0.15 Score=34.79 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=27.2
Q ss_pred eecccCc-eeeecccceeeeEEEEeCCCCCeEEEE
Q psy14042 149 VGSVDGN-RIWGKEFKKTSMLGVQWTSDSQNLLFA 182 (238)
Q Consensus 149 ~~~~~g~-rv~g~~~~~~~~~~~~~~~~~~~~~~g 182 (238)
....+|. +|.|+.+++ .+.+++|++++++.+|.
T Consensus 4 ~~~~~~~~~V~g~~ier-~~~~~~~~~~e~~~~f~ 37 (69)
T TIGR03595 4 ERDEDGVFVVSGKKIER-WVAKTPFNNDENLRRFA 37 (69)
T ss_pred EECCCCeEEEechHHHH-HHHHcCCCCHHHHHHHH
Confidence 3344566 899999998 99999999999987763
No 381
>KOG0265|consensus
Probab=78.75 E-value=5.6 Score=35.00 Aligned_cols=54 Identities=20% Similarity=0.428 Sum_probs=44.5
Q ss_pred ceEEeecccCc-eeeecc--------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeC---CCCee
Q psy14042 145 SAVIVGSVDGN-RIWGKE--------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDY---EGNFM 198 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~--------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~---~g~~~ 198 (238)
-++..++.||+ |+|.-+ .++..+..+.|..++..+..|-.+++|.+||- +|.++
T Consensus 146 ~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ 211 (338)
T KOG0265|consen 146 QLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT 211 (338)
T ss_pred eEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEE
Confidence 45566788999 999877 22568889999999999999999999999999 55443
No 382
>PTZ00420 coronin; Provisional
Probab=78.61 E-value=9.9 Score=36.62 Aligned_cols=57 Identities=18% Similarity=0.317 Sum_probs=40.4
Q ss_pred EeecccCc-eeeecccce--------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeee
Q psy14042 148 IVGSVDGN-RIWGKEFKK--------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMW 204 (238)
Q Consensus 148 ~~~~~~g~-rv~g~~~~~--------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~ 204 (238)
+.++.||. ++|.-+-.. ..+..+.|+|++.++..+..+|.|+|||.. |..+..+.-|
T Consensus 142 aSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 142 CSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 34566777 888643211 146788999999999889999999999986 5445544433
No 383
>KOG4378|consensus
Probab=78.50 E-value=4.8 Score=37.80 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=40.8
Q ss_pred eeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeee--eeeeecCCCCCceeEEEEEeecC
Q psy14042 165 TSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMN--KVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 165 ~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~--~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
..+..++|++++..+..|+..|+|+.||..|.... .+..+ ...+.+|.|-.-
T Consensus 251 ~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah------~~sVt~vafq~s 304 (673)
T KOG4378|consen 251 HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH------DASVTRVAFQPS 304 (673)
T ss_pred CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec------ccceeEEEeeec
Confidence 37788999999999999999999999999987744 44444 334777777654
No 384
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=77.63 E-value=14 Score=35.31 Aligned_cols=85 Identities=16% Similarity=0.178 Sum_probs=60.0
Q ss_pred CceEEEEEEEC-C--------------------cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHH
Q psy14042 28 DETGLIIVWML-Y--------------------KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKN 86 (238)
Q Consensus 28 ~ad~~IlV~dv-d--------------------~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~ 86 (238)
..|++++|-.+ . +.-|.++..-++.+++ -++|++++.||.|...+.+ .+.+++
T Consensus 322 ~P~~~VlVaTvraLK~hgg~~~~~l~~en~Eal~sGl~NL~RHIenvr~----FGvPvVVAINKFd~DTe~E--i~~I~~ 395 (557)
T PRK13505 322 KPDAVVIVATVRALKMHGGVAKDDLKEENVEALKKGFANLERHIENIRK----FGVPVVVAINKFVTDTDAE--IAALKE 395 (557)
T ss_pred CCCEEEEEeehHHHHHcCCCChhhccccCHHHHHHHHHHHHHHHHHHHH----cCCCEEEEEeCCCCCCHHH--HHHHHH
Confidence 67888888754 1 1235566666666665 4699999999999865432 346788
Q ss_pred HHHhCCCeEEE--EccCCCCCHHHHHHHHHHHHH
Q psy14042 87 LAASFKVKFIE--VSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 87 ~~~~~~~~~~e--vSA~t~~gv~elf~~i~~~l~ 118 (238)
++++.|+++.. .=++-|+|--++-..+++.+.
T Consensus 396 ~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~ 429 (557)
T PRK13505 396 LCEELGVEVALSEVWAKGGEGGVELAEKVVELIE 429 (557)
T ss_pred HHHHcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence 88999988663 345667888888888877665
No 385
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=76.95 E-value=5.4 Score=32.57 Aligned_cols=38 Identities=18% Similarity=0.490 Sum_probs=32.1
Q ss_pred eeEEEEeCCCCCeEEEEee------CceEEEEeCCCCeeeeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAIK------GGQVHLYDYEGNFMNKVSM 203 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~------~g~~~~~d~~g~~~~~~~~ 203 (238)
....++|+|+++.+...+. +.-+.||+.+|..+.+..+
T Consensus 145 ~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~~ 188 (194)
T PF08662_consen 145 DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKPF 188 (194)
T ss_pred cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecch
Confidence 4567899999999998875 5778999999999887665
No 386
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=76.46 E-value=4.1 Score=24.07 Aligned_cols=20 Identities=10% Similarity=0.142 Sum_probs=16.3
Q ss_pred CCCeEEEEeeCceEEEEeCC
Q psy14042 175 DSQNLLFAIKGGQVHLYDYE 194 (238)
Q Consensus 175 ~~~~~~~g~~~g~~~~~d~~ 194 (238)
.+..+++|+.+|.++.+|..
T Consensus 20 ~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT
T ss_pred ECCEEEEEcCCCEEEEEeCC
Confidence 46789999999999999864
No 387
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=76.19 E-value=14 Score=34.52 Aligned_cols=67 Identities=15% Similarity=0.032 Sum_probs=41.5
Q ss_pred ECCeEEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc
Q psy14042 7 GHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR 77 (238)
Q Consensus 7 ~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~ 77 (238)
++=....++|.| +.|..-++. -+|.+|.|.|....-=....++.+ .+...++||+-..||.|.+...
T Consensus 76 F~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfe----VcrlR~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 76 FDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFE----VCRLRDIPIFTFINKLDREGRD 149 (528)
T ss_pred eccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHH----HHhhcCCceEEEeeccccccCC
Confidence 333447788999 555443333 689999999983211111122222 3334899999999999986543
No 388
>KOG4283|consensus
Probab=75.99 E-value=7.9 Score=34.14 Aligned_cols=74 Identities=15% Similarity=0.250 Sum_probs=52.9
Q ss_pred ecceEEeecccCc-eeeecc---------cceeeeEEEEeCCCCC---eEEEEeeCceEEEEeCC-CCeeeeeeeecCCC
Q psy14042 143 RASAVIVGSVDGN-RIWGKE---------FKKTSMLGVQWTSDSQ---NLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPG 208 (238)
Q Consensus 143 ~~~~~~~~~~~g~-rv~g~~---------~~~~~~~~~~~~~~~~---~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~ 208 (238)
+.|+.+.++-|.. .||... ++. .+-++.|||=.. ++-.||.+-+|++.|-+ |.|-+.|.=|
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~-~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGH---- 187 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG-KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGH---- 187 (397)
T ss_pred cCceeecccccceEEEeecccceeeEEeecCc-eeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccc----
Confidence 3355555555555 666654 443 666677877654 78899999999999985 9998877755
Q ss_pred CCceeEEEEEeecCC
Q psy14042 209 SEMGEIAALKYYLNR 223 (238)
Q Consensus 209 ~~~~~i~~~~w~~~~ 223 (238)
...|-+++|....
T Consensus 188 --r~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 188 --RDGVLAVEWSPSS 200 (397)
T ss_pred --cCceEEEEeccCc
Confidence 6779999997643
No 389
>KOG2423|consensus
Probab=75.88 E-value=16 Score=33.71 Aligned_cols=82 Identities=17% Similarity=0.154 Sum_probs=48.4
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV 106 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv 106 (238)
.+|++|-|.|. |+--- .....-..|+++. +....|+|.||+||.... +....++.+.+++..--|-.|.....|-
T Consensus 213 SSDVvvqVlDARDPmGT-rc~~ve~ylkke~--phKHli~vLNKvDLVPtw-vt~~Wv~~lSkeyPTiAfHAsi~nsfGK 288 (572)
T KOG2423|consen 213 SSDVVVQVLDARDPMGT-RCKHVEEYLKKEK--PHKHLIYVLNKVDLVPTW-VTAKWVRHLSKEYPTIAFHASINNSFGK 288 (572)
T ss_pred ccceeEEeeeccCCccc-ccHHHHHHHhhcC--CcceeEEEeeccccccHH-HHHHHHHHHhhhCcceeeehhhcCccch
Confidence 46888888888 54211 1122222233333 667799999999996432 3344666677777655565676666665
Q ss_pred HHHHHHH
Q psy14042 107 DELLVGI 113 (238)
Q Consensus 107 ~elf~~i 113 (238)
..+.+.+
T Consensus 289 galI~ll 295 (572)
T KOG2423|consen 289 GALIQLL 295 (572)
T ss_pred hHHHHHH
Confidence 5444433
No 390
>KOG0460|consensus
Probab=75.38 E-value=9.7 Score=34.41 Aligned_cols=70 Identities=16% Similarity=0.221 Sum_probs=42.5
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc---ccHHHHHHHHHhCC-----CeEEEE
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA---VSSQDAKNLAASFK-----VKFIEV 98 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~---v~~~~~~~~~~~~~-----~~~~ev 98 (238)
+.|++|+|... |- .....++-+-..++ . .=..+++..||.|+.++.+ .-+-+++++..++| +|++.-
T Consensus 140 qMDGaILVVaatDG-~MPQTrEHlLLArQ-V--GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~G 215 (449)
T KOG0460|consen 140 QMDGAILVVAATDG-PMPQTREHLLLARQ-V--GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRG 215 (449)
T ss_pred ccCceEEEEEcCCC-CCcchHHHHHHHHH-c--CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeec
Confidence 77999999988 52 22222222222222 1 2234788899999984433 33457788888876 467776
Q ss_pred ccC
Q psy14042 99 SVG 101 (238)
Q Consensus 99 SA~ 101 (238)
||+
T Consensus 216 SAL 218 (449)
T KOG0460|consen 216 SAL 218 (449)
T ss_pred chh
Confidence 665
No 391
>KOG3887|consensus
Probab=75.06 E-value=45 Score=28.88 Aligned_cols=108 Identities=16% Similarity=0.200 Sum_probs=63.7
Q ss_pred eEEEEEEEe-----CCCcccccC-----CceEEEEEEECCc---chHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042 10 GKVRAIIWN-----EQYEKLTSS-----DETGLIIVWMLYK---PSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA 76 (238)
Q Consensus 10 ~~v~l~iWD-----e~~~~l~~~-----~ad~~IlV~dvd~---~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~ 76 (238)
.-|.+++|| .-|..-... ++-+.|+|.|... +.+..+...+.+. |.-.+++.+=+..-|.|-..+
T Consensus 73 sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~ra--ykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 73 SFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERA--YKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred hhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhhe--eecCCCceEEEEEEeccCCch
Confidence 458899999 333332222 7778888888833 3333333344433 332367778888899995322
Q ss_pred -------ccccHHHHHHHHHh----CCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 77 -------RAVSSQDAKNLAAS----FKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 77 -------~~v~~~~~~~~~~~----~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
+.+.......++.. ..+.|+.+|.. ...|-|+|..+++.+..+
T Consensus 151 d~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIy-DHSIfEAFSkvVQkLipq 204 (347)
T KOG3887|consen 151 DFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIY-DHSIFEAFSKVVQKLIPQ 204 (347)
T ss_pred hhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeec-chHHHHHHHHHHHHHhhh
Confidence 22222222333332 23457777766 568999999998877544
No 392
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=74.66 E-value=9.5 Score=29.18 Aligned_cols=45 Identities=16% Similarity=0.085 Sum_probs=34.4
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
.+|.++++.+.+..++..+...++.+.+.. ...++.+|.|+.+-.
T Consensus 66 ~aD~vviv~~~~~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~ 110 (139)
T cd02038 66 AADEVIVVTTPEPTSITDAYALIKKLAKQL--RVLNFRVVVNRAESP 110 (139)
T ss_pred hCCeEEEEcCCChhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence 889999888888888888777777775533 456788999999643
No 393
>PLN00181 protein SPA1-RELATED; Provisional
Probab=74.32 E-value=24 Score=35.16 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=37.1
Q ss_pred ceEEeecccCc-eeeecccce--------eeeEEEEe-CCCCCeEEEEeeCceEEEEeCC
Q psy14042 145 SAVIVGSVDGN-RIWGKEFKK--------TSMLGVQW-TSDSQNLLFAIKGGQVHLYDYE 194 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~~~--------~~~~~~~~-~~~~~~~~~g~~~g~~~~~d~~ 194 (238)
...+.++.+|. ++|.-.-.. ..+..+.| ++++..+..|..+|.|++||..
T Consensus 589 ~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~ 648 (793)
T PLN00181 589 TLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLR 648 (793)
T ss_pred CEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 35567788887 999754321 13456677 5678999999999999999985
No 394
>KOG0447|consensus
Probab=73.97 E-value=18 Score=34.83 Aligned_cols=74 Identities=19% Similarity=0.208 Sum_probs=52.5
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhC-----CCeEEEEccCC
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF-----KVKFIEVSVGI 102 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~-----~~~~~evSA~t 102 (238)
+.+++|+|. ...|.+.-+.....+....++.++..|+|.+|.||.+.....+..+++..+-. .+.||.+..-.
T Consensus 448 NPNAIILCI--QDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGr 525 (980)
T KOG0447|consen 448 NPNAIILCI--QDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGK 525 (980)
T ss_pred CCCeEEEEe--ccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcceeEEEecC
Confidence 788888885 34455555666667666666678889999999999988777888777765432 23477766554
Q ss_pred C
Q psy14042 103 H 103 (238)
Q Consensus 103 ~ 103 (238)
|
T Consensus 526 G 526 (980)
T KOG0447|consen 526 G 526 (980)
T ss_pred C
Confidence 4
No 395
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=73.66 E-value=6.8 Score=21.67 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=19.9
Q ss_pred CCeEEEEeeCceEEEEeC-CCCeeee
Q psy14042 176 SQNLLFAIKGGQVHLYDY-EGNFMNK 200 (238)
Q Consensus 176 ~~~~~~g~~~g~~~~~d~-~g~~~~~ 200 (238)
+.++++|+.+|.++.+|. .|..+-+
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEE
Confidence 347999999999999999 5766543
No 396
>KOG0772|consensus
Probab=73.56 E-value=9 Score=36.17 Aligned_cols=37 Identities=14% Similarity=0.378 Sum_probs=30.9
Q ss_pred ceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeee
Q psy14042 163 KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMN 199 (238)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~ 199 (238)
.|+.+....|++|+..+--|-.+|.|++||.-+.+++
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~ 352 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR 352 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeecCCcccc
Confidence 4467778899999999999999999999998544444
No 397
>KOG0099|consensus
Probab=73.42 E-value=13 Score=32.45 Aligned_cols=26 Identities=8% Similarity=-0.114 Sum_probs=20.8
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 95 FIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 95 ~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
+-.+.|..-++|..+|...-..++..
T Consensus 346 pHFTcAvDTenIrrVFnDcrdiIqr~ 371 (379)
T KOG0099|consen 346 PHFTCAVDTENIRRVFNDCRDIIQRM 371 (379)
T ss_pred cceeEeechHHHHHHHHHHHHHHHHH
Confidence 45688888899999999988777643
No 398
>KOG0269|consensus
Probab=73.17 E-value=9 Score=37.70 Aligned_cols=62 Identities=15% Similarity=0.311 Sum_probs=47.5
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCe-eeeeeeecCCCCCceeEEEEEeecCCCcccccccccCCCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNF-MNKVSMWSGPGSEMGEIAALKYYLNRTSARSLNKFEGCPS 237 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~-~~~~~~~~~~~~~~~~i~~~~w~~~~~~~~~~~~~~~~~~ 237 (238)
.+.+.+|+|+...+--|--++.|.|||..|.. -.+..+. .-.|+..++|-..+. .-||-|-.
T Consensus 222 pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-----Tiapv~rVkWRP~~~-----~hLAtcsm 284 (839)
T KOG0269|consen 222 PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-----TIAPVGRVKWRPARS-----YHLATCSM 284 (839)
T ss_pred ceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-----ecceeeeeeeccCcc-----chhhhhhc
Confidence 78899999999999999999999999998644 3333333 256899999998877 34555543
No 399
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=72.52 E-value=4.1 Score=35.10 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=25.5
Q ss_pred CeEEEEeeCceEEEEeCCCC-eeeeeeeecCC
Q psy14042 177 QNLLFAIKGGQVHLYDYEGN-FMNKVSMWSGP 207 (238)
Q Consensus 177 ~~~~~g~~~g~~~~~d~~g~-~~~~~~~~~~~ 207 (238)
.-+.+||.+|+|+|+|++|- .+.++++++-|
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvP 227 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVP 227 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCc
Confidence 45789999999999999984 47788887544
No 400
>KOG1524|consensus
Probab=71.93 E-value=5.6 Score=37.73 Aligned_cols=56 Identities=13% Similarity=0.249 Sum_probs=43.3
Q ss_pred cccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 160 KEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
+.-.. .+.+++|++.+.++.-|-.+-...|||.+|..+..-. .+.-+|.++.|...
T Consensus 183 kAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~------~~ey~ITSva~npd 238 (737)
T KOG1524|consen 183 RAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSA------AEEYAITSVAFNPE 238 (737)
T ss_pred eccCc-EEEEeecCccccceeecCCceeEEeecccCcccccCC------hhccceeeeeeccc
Confidence 44554 8899999999999999999999999999998764222 23556777777543
No 401
>KOG0284|consensus
Probab=71.34 E-value=10 Score=34.73 Aligned_cols=70 Identities=23% Similarity=0.375 Sum_probs=54.6
Q ss_pred EeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEE
Q psy14042 148 IVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAA 216 (238)
Q Consensus 148 ~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~ 216 (238)
..-+.||. ++|.....+ --+.+++|.|.-.++..|.++.-|.+||.. |.-+..+.-| ...|-+
T Consensus 196 ~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~H------KntVl~ 269 (464)
T KOG0284|consen 196 LTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGH------KNTVLA 269 (464)
T ss_pred EEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhc------cceEEE
Confidence 34467777 888755432 136788999999999999999999999995 7777766665 778999
Q ss_pred EEeecCC
Q psy14042 217 LKYYLNR 223 (238)
Q Consensus 217 ~~w~~~~ 223 (238)
++|..+.
T Consensus 270 ~~f~~n~ 276 (464)
T KOG0284|consen 270 VKFNPNG 276 (464)
T ss_pred EEEcCCC
Confidence 9998765
No 402
>KOG0645|consensus
Probab=70.92 E-value=32 Score=30.03 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=42.7
Q ss_pred cceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 162 FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
-+| .+..+.|+|.++.+.-|+-++.+-||-.. |.|-. ..-++|. ...+-++.|...
T Consensus 60 hkr-sVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efec---v~~lEGH-EnEVK~Vaws~s 116 (312)
T KOG0645|consen 60 HKR-SVRSVAWSPHGRYLASASFDATVVIWKKEDGEFEC---VATLEGH-ENEVKCVAWSAS 116 (312)
T ss_pred chh-eeeeeeecCCCcEEEEeeccceEEEeecCCCceeE---Eeeeecc-ccceeEEEEcCC
Confidence 346 88899999999999999999999999874 66643 2223443 347889999764
No 403
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=70.49 E-value=10 Score=34.44 Aligned_cols=43 Identities=28% Similarity=0.274 Sum_probs=32.7
Q ss_pred CCCCEEEEEEeccCCCccc-ccHHHHHHHHHhCCCeEEEEccCC
Q psy14042 60 RTRPAIIVANKIDLARARA-VSSQDAKNLAASFKVKFIEVSVGI 102 (238)
Q Consensus 60 ~~~piilVgNK~DL~~~~~-v~~~~~~~~~~~~~~~~~evSA~t 102 (238)
...|+++++||.|...... -....++++++..+.+++.+||+.
T Consensus 205 t~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~vV~~sA~~ 248 (372)
T COG0012 205 TAKPMLYVANVSEDDLANLNEYVKRLKELAAKENAEVVPVSAAI 248 (372)
T ss_pred hcCCeEEEEECCcccccchhHHHHHHHHHhhhcCCcEEEeeHHH
Confidence 5789999999999865433 124566777778888999999973
No 404
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=70.34 E-value=12 Score=38.20 Aligned_cols=66 Identities=17% Similarity=0.238 Sum_probs=52.6
Q ss_pred eeeecccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeecCCC
Q psy14042 156 RIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLNRT 224 (238)
Q Consensus 156 rv~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~~~ 224 (238)
.+-| .++. -+....||||+.++.+.|.+|.+.+++.+-..++...++...- ....-+.+=|=...|
T Consensus 114 E~VG-~vd~-GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~-~~~~~VsVGWGkKeT 179 (928)
T PF04762_consen 114 EIVG-SVDS-GILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDF-GESKHVSVGWGKKET 179 (928)
T ss_pred EEEE-EEcC-cEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCcccc-CCCceeeeccCcccC
Confidence 3444 3443 6788899999999999999999999999999999999985443 345778888977554
No 405
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=69.60 E-value=14 Score=28.55 Aligned_cols=40 Identities=20% Similarity=0.047 Sum_probs=24.6
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEec
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKI 71 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~ 71 (238)
.+|++|+|.+. ...+-.....+...... .....++|.||+
T Consensus 128 ~~d~vi~V~~~~~~~~~~~~~~l~~~~~~----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 128 KADVVIFVVDANQDLTESDMEFLKQMLDP----DKSRTIFVLNKA 168 (168)
T ss_dssp TTEEEEEEEETTSTGGGHHHHHHHHHHTT----TCSSEEEEEE-G
T ss_pred cCCEEEEEeccCcccchHHHHHHHHHhcC----CCCeEEEEEcCC
Confidence 89999999998 43333344444444332 344489999985
No 406
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=69.35 E-value=15 Score=36.21 Aligned_cols=60 Identities=15% Similarity=0.082 Sum_probs=37.5
Q ss_pred EEEEEEEe----CCCcc-cccC--CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 11 KVRAIIWN----EQYEK-LTSS--DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 11 ~v~l~iWD----e~~~~-l~~~--~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
.+++++-| -.|.. +..+ -.|++|+|+|. .--..+...-|. .+.+ .++|.+++.||.|...
T Consensus 75 ~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~r-qa~~----~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 75 DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWR-QADK----YGVPRILFVNKMDRLG 142 (697)
T ss_pred ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHH-HHhh----cCCCeEEEEECccccc
Confidence 57888889 33322 2222 68999999999 322222222232 2222 6799999999999753
No 407
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=68.74 E-value=11 Score=30.01 Aligned_cols=32 Identities=9% Similarity=0.021 Sum_probs=26.0
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCHHHHHHHHH
Q psy14042 83 DAKNLAASFKVKFIEVSVGIHHNVDELLVGIL 114 (238)
Q Consensus 83 ~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~ 114 (238)
+.....+..|.+++.+|+++++|++++...+.
T Consensus 3 ~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~ 34 (161)
T PF03193_consen 3 ELLEQYEKLGYPVFFISAKTGEGIEELKELLK 34 (161)
T ss_dssp HHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHT
T ss_pred HHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhc
Confidence 44556678899999999999999999987775
No 408
>KOG0463|consensus
Probab=68.47 E-value=18 Score=33.23 Aligned_cols=96 Identities=15% Similarity=0.055 Sum_probs=50.6
Q ss_pred EEEEe----CCCcccccC-----CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH--
Q psy14042 14 AIIWN----EQYEKLTSS-----DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ-- 82 (238)
Q Consensus 14 l~iWD----e~~~~l~~~-----~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~-- 82 (238)
+.+.| |+|-+.+-. -.|..+++.-.+..-..-.++-+..... -.+|+++|.+|+|+.......+.
T Consensus 221 iTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALa----L~VPVfvVVTKIDMCPANiLqEtmK 296 (641)
T KOG0463|consen 221 ITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALA----LHVPVFVVVTKIDMCPANILQETMK 296 (641)
T ss_pred EEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhh----hcCcEEEEEEeeccCcHHHHHHHHH
Confidence 45566 777665543 3455555443332222222222222221 46899999999998532211110
Q ss_pred HHHH--------------------------HHHhCCCeEEEEccCCCCCHHHHHHHH
Q psy14042 83 DAKN--------------------------LAASFKVKFIEVSVGIHHNVDELLVGI 113 (238)
Q Consensus 83 ~~~~--------------------------~~~~~~~~~~evSA~t~~gv~elf~~i 113 (238)
.+.+ |..+.-||+|.+|-.+|.|++-+...+
T Consensus 297 ll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 297 LLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred HHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 1111 122333789999999999998654443
No 409
>KOG0265|consensus
Probab=68.44 E-value=8.6 Score=33.86 Aligned_cols=55 Identities=18% Similarity=0.469 Sum_probs=40.7
Q ss_pred ccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCC-CeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 161 EFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEG-NFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g-~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
.++. .+....|+|++.-+-+|+++--+++||..+ .++-++ ||- ...|-.++.|.-
T Consensus 264 nfek-nlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl-----pGh-~gsvn~~~Fhp~ 319 (338)
T KOG0265|consen 264 NFEK-NLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL-----PGH-YGSVNEVDFHPT 319 (338)
T ss_pred hhhh-hcceeeccCCCCccccccccceEEEeecccccEEEEc-----CCc-ceeEEEeeecCC
Confidence 3565 888999999999999999999999999988 444433 332 334555555543
No 410
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=68.11 E-value=39 Score=27.59 Aligned_cols=66 Identities=8% Similarity=-0.047 Sum_probs=43.8
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCcccccHHHHHHHHHhCCCeEEE
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARAVSSQDAKNLAASFKVKFIE 97 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~e 97 (238)
.+|.+|++...+..++..+......+.......+.+ ..++.||.+.. ...+..+++.+.++.+++.
T Consensus 141 ~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~----~~~~~~~~~~~~~~~~vl~ 207 (212)
T cd02117 141 KADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----RETELIDAFAERLGTQVIH 207 (212)
T ss_pred cCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc----cHHHHHHHHHHHcCCCEEE
Confidence 588888888777778777777666666554222444 45899999854 2234556677777766543
No 411
>KOG0277|consensus
Probab=67.67 E-value=33 Score=29.74 Aligned_cols=73 Identities=21% Similarity=0.415 Sum_probs=53.7
Q ss_pred eEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEE-EEeeCceEEEEeCC--CCeeeeeeeecCCCCCce
Q psy14042 146 AVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLL-FAIKGGQVHLYDYE--GNFMNKVSMWSGPGSEMG 212 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~-~g~~~g~~~~~d~~--g~~~~~~~~~~~~~~~~~ 212 (238)
..++++-||+ .+|.....+ .-+-+..|+|-...+. -.+.+|.+.+||-. |.+++ +..| ..
T Consensus 119 ~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah------~~ 191 (311)
T KOG0277|consen 119 IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAH------NS 191 (311)
T ss_pred eEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEec------cc
Confidence 4455688888 888877654 1345668988877765 45678999999974 88888 6666 56
Q ss_pred eEEEEEeecCCCc
Q psy14042 213 EIAALKYYLNRTS 225 (238)
Q Consensus 213 ~i~~~~w~~~~~~ 225 (238)
.|-+.+|.+-+..
T Consensus 192 Eil~cdw~ky~~~ 204 (311)
T KOG0277|consen 192 EILCCDWSKYNHN 204 (311)
T ss_pred eeEeecccccCCc
Confidence 8999999886653
No 412
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=66.95 E-value=21 Score=22.01 Aligned_cols=33 Identities=27% Similarity=0.488 Sum_probs=26.8
Q ss_pred eeEEEEeCCCCC---eEEEEeeCceEEEEeCCCCee
Q psy14042 166 SMLGVQWTSDSQ---NLLFAIKGGQVHLYDYEGNFM 198 (238)
Q Consensus 166 ~~~~~~~~~~~~---~~~~g~~~g~~~~~d~~g~~~ 198 (238)
.+....|||+.. ++.+.-..|.|||+|..-+|.
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~ 37 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFM 37 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCcc
Confidence 467788997666 889999999999999975553
No 413
>KOG0278|consensus
Probab=66.10 E-value=20 Score=31.06 Aligned_cols=52 Identities=21% Similarity=0.344 Sum_probs=39.1
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCC----CCceeEEEE
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPG----SEMGEIAAL 217 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~----~~~~~i~~~ 217 (238)
.+..+-|-.+++-++-++.++.|++||. .|.-++.|.+.+.+. +....|+.|
T Consensus 145 ~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTi 201 (334)
T KOG0278|consen 145 GIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTI 201 (334)
T ss_pred cceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEE
Confidence 5566778888899988899999999998 488888888877655 234455544
No 414
>PLN00181 protein SPA1-RELATED; Provisional
Probab=65.08 E-value=16 Score=36.34 Aligned_cols=49 Identities=20% Similarity=0.386 Sum_probs=38.2
Q ss_pred ceEEeecccCc-eeeecccc----------------------eeeeEEEEeCCCCCeEEEEeeCceEEEEeC
Q psy14042 145 SAVIVGSVDGN-RIWGKEFK----------------------KTSMLGVQWTSDSQNLLFAIKGGQVHLYDY 193 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~~----------------------~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~ 193 (238)
...+.++.+|. .+|..... ...+..+.|++++..+..|..+|.|+|||.
T Consensus 721 ~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 721 GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 45667788887 88875311 014788999999999999999999999984
No 415
>KOG2048|consensus
Probab=64.84 E-value=22 Score=34.58 Aligned_cols=39 Identities=15% Similarity=0.436 Sum_probs=32.6
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMW 204 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~ 204 (238)
.+..+.|.+++-.+.-|+.+|-|++||.. |.-+..+.|.
T Consensus 156 RvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~ 195 (691)
T KOG2048|consen 156 RVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQ 195 (691)
T ss_pred eEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeec
Confidence 57889999999999999999999999995 6656644444
No 416
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=64.62 E-value=19 Score=34.38 Aligned_cols=54 Identities=9% Similarity=0.128 Sum_probs=38.5
Q ss_pred ccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 161 EFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
.+. ..+.+..++|+|..+.+|-.||.|++||.+=......+.. ....-+.|+.+
T Consensus 257 pL~-s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~-------~~P~~iaWHp~ 310 (545)
T PF11768_consen 257 PLP-SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAE-------FIPTLIAWHPD 310 (545)
T ss_pred ecC-CcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeec-------ccceEEEEcCC
Confidence 345 3778889999999999999999999999864433322322 33455666654
No 417
>KOG0296|consensus
Probab=64.55 E-value=12 Score=33.66 Aligned_cols=37 Identities=14% Similarity=0.340 Sum_probs=33.0
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVS 202 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~ 202 (238)
...+-++.|+++.+.-|..+|.|++||. .|..+.+++
T Consensus 192 ~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 192 PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred CcccccccCCCceEEEEecCceEEEEecCCCceeEEec
Confidence 3456689999999999999999999999 598999888
No 418
>KOG0289|consensus
Probab=64.02 E-value=14 Score=34.16 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=36.6
Q ss_pred eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEee
Q psy14042 165 TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYY 220 (238)
Q Consensus 165 ~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~ 220 (238)
+.+....+.||+-+.-.|+.+|++.|||-. ++.+.+..-| ..+|-+|..-
T Consensus 348 v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpgh------t~~vk~i~Fs 398 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGH------TGPVKAISFS 398 (506)
T ss_pred ceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCC------CCceeEEEec
Confidence 346777899999999999999999999984 5545444333 4466666543
No 419
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=63.92 E-value=17 Score=33.40 Aligned_cols=46 Identities=26% Similarity=0.558 Sum_probs=34.2
Q ss_pred cccCceeeecccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCe
Q psy14042 151 SVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNF 197 (238)
Q Consensus 151 ~~~g~rv~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~ 197 (238)
+..|+.++.-..+...+....|+.+|.++. =+.+|.+++||.+|++
T Consensus 67 s~sG~ll~~i~w~~~~iv~~~wt~~e~Lvv-V~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 67 SSSGKLLSSIPWDSGRIVGMGWTDDEELVV-VQSDGTVRVYDLFGEF 112 (410)
T ss_pred CCCCCEeEEEEECCCCEEEEEECCCCeEEE-EEcCCEEEEEeCCCce
Confidence 445554444334334788999999877775 4599999999999999
No 420
>KOG0291|consensus
Probab=63.80 E-value=20 Score=35.46 Aligned_cols=51 Identities=12% Similarity=0.313 Sum_probs=37.0
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeee-eeeeecCCCCCceeEEEEEeecC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMN-KVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~-~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
.+.+.+.+||++.+.-|-.+|-|.|||.+-.|.. ...-| ...+.+++|...
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteH------ts~Vt~v~f~~~ 403 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEH------TSGVTAVQFTAR 403 (893)
T ss_pred ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccC------CCceEEEEEEec
Confidence 3566788999999999999999999999877643 22222 334566666543
No 421
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=63.22 E-value=25 Score=32.07 Aligned_cols=89 Identities=11% Similarity=0.104 Sum_probs=46.6
Q ss_pred CceEEEEEEECCcchHHHHHHHHH-HHHHhcCCCCCCEEEEEEeccCC--C-----cccccHH----HHHHHH----HhC
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVI-RLHEEGYLRTRPAIIVANKIDLA--R-----ARAVSSQ----DAKNLA----ASF 91 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~-~l~~~~~~~~~piilVgNK~DL~--~-----~~~v~~~----~~~~~~----~~~ 91 (238)
.-|.+||+.+ +.|....-++. ++++ .+.|+++|-+|+|.. . .+...++ ++++-+ +..
T Consensus 114 ~yD~fiii~s---~rf~~ndv~La~~i~~----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 114 RYDFFIIISS---ERFTENDVQLAKEIQR----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp G-SEEEEEES---SS--HHHHHHHHHHHH----TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred ccCEEEEEeC---CCCchhhHHHHHHHHH----cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 7788887765 34444444443 3444 678999999999961 1 1122222 222221 223
Q ss_pred CC---eEEEEccCCC--CCHHHHHHHHHHHHHhhhcc
Q psy14042 92 KV---KFIEVSVGIH--HNVDELLVGILNQIRLKRSL 123 (238)
Q Consensus 92 ~~---~~~evSA~t~--~gv~elf~~i~~~l~~~~~~ 123 (238)
|. ++|.+|+..- .....|...+.+.++.+++.
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~ 223 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH 223 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence 43 5899999765 45777888888888777654
No 422
>KOG1587|consensus
Probab=63.15 E-value=21 Score=34.33 Aligned_cols=60 Identities=17% Similarity=0.128 Sum_probs=44.1
Q ss_pred eeEEEEeCCCCCe-EEEEeeCceEEEEeCCCCeee-eeeeecCCCCCceeEEEEEeecCCCc
Q psy14042 166 SMLGVQWTSDSQN-LLFAIKGGQVHLYDYEGNFMN-KVSMWSGPGSEMGEIAALKYYLNRTS 225 (238)
Q Consensus 166 ~~~~~~~~~~~~~-~~~g~~~g~~~~~d~~g~~~~-~~~~~~~~~~~~~~i~~~~w~~~~~~ 225 (238)
.+.+..++|.... +.-|+.+|+|.+||..+..-. .-.+++...+...+++++-|-.+..+
T Consensus 244 ~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~ 305 (555)
T KOG1587|consen 244 EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHN 305 (555)
T ss_pred ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCC
Confidence 5667778776655 457899999999999755543 33444455566789999999987776
No 423
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=62.46 E-value=95 Score=27.99 Aligned_cols=106 Identities=13% Similarity=0.233 Sum_probs=57.4
Q ss_pred EECCeEEEEEEEe------------CCCcccccC--CceEEEEEEECC-cch-HHHHHHHHHHHHHhcC-CCCCCEEEEE
Q psy14042 6 QGHSGKVRAIIWN------------EQYEKLTSS--DETGLIIVWMLY-KPS-YHRVEQDVIRLHEEGY-LRTRPAIIVA 68 (238)
Q Consensus 6 ~~~~~~v~l~iWD------------e~~~~l~~~--~ad~~IlV~dvd-~~s-~~~~~~~~~~l~~~~~-~~~~piilVg 68 (238)
+.+| +++||.| -+-+.+... +||.+++|.|+. ... .+. +..++....- .+..|--+..
T Consensus 106 ~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~---i~~ELe~~GIrlnk~~p~V~I 180 (365)
T COG1163 106 EYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDI---IERELEDVGIRLNKRPPDVTI 180 (365)
T ss_pred eecC--ceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHH---HHHHHHhcCeEecCCCCceEE
Confidence 4444 7789999 122333333 999999999993 222 333 3333332210 1223322333
Q ss_pred EeccCC-----C--c-ccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 69 NKIDLA-----R--A-RAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 69 NK~DL~-----~--~-~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
.|.+.- . . ....++.++...+++++.--.+-......++++.+.+...
T Consensus 181 ~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~n 236 (365)
T COG1163 181 KKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGN 236 (365)
T ss_pred EEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhc
Confidence 444431 1 1 1245677888888888764445555556777776666543
No 424
>KOG2445|consensus
Probab=62.32 E-value=28 Score=30.89 Aligned_cols=55 Identities=11% Similarity=0.133 Sum_probs=44.9
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeC---CCCe--eeeeeeecCCCCCceeEEEEEeecCCCcc
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDY---EGNF--MNKVSMWSGPGSEMGEIAALKYYLNRTSA 226 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~---~g~~--~~~~~~~~~~~~~~~~i~~~~w~~~~~~~ 226 (238)
.+..+.|.+-+..+--|+.++.+.|||. .|++ .++.+-+ ...|+.+.|-++.-|-
T Consensus 15 lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah------~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAH------DGSIWRVVWAHPEFGQ 74 (361)
T ss_pred eeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEec------CCcEEEEEecCccccc
Confidence 7889999999999999999999999993 5776 3344444 5679999999887763
No 425
>KOG0316|consensus
Probab=61.03 E-value=26 Score=30.05 Aligned_cols=54 Identities=26% Similarity=0.495 Sum_probs=42.3
Q ss_pred cceEEeecccCc-eeeecc--------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCee
Q psy14042 144 ASAVIVGSVDGN-RIWGKE--------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFM 198 (238)
Q Consensus 144 ~~~~~~~~~~g~-rv~g~~--------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~ 198 (238)
....+.|+.||+ |...-+ +.. .+.++.+++|++-.+.|.-++.++++|.. |..+
T Consensus 155 ~heIvaGS~DGtvRtydiR~G~l~sDy~g~-pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 155 EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH-PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL 218 (307)
T ss_pred ccEEEeeccCCcEEEEEeecceeehhhcCC-cceeEEecCCCCEEEEeeccceeeecccchhHHH
Confidence 344566789998 765433 343 78899999999999999999999999985 6544
No 426
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=60.52 E-value=11 Score=28.07 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=18.2
Q ss_pred EEEeccCCCcccccHHHHHHHHHhC-CCeEEEEccC
Q psy14042 67 VANKIDLARARAVSSQDAKNLAASF-KVKFIEVSVG 101 (238)
Q Consensus 67 VgNK~DL~~~~~v~~~~~~~~~~~~-~~~~~evSA~ 101 (238)
++||+|++. ..+-+.++.+++ ...++.|||.
T Consensus 1 AaNK~D~~~----a~~ni~kl~~~~~~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPA----ADENIEKLKEKYPDEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S-----HHHHHHHHHHHTT-EEEEE-HH
T ss_pred CCccccccc----cHhHHHHHHHhCCCCceeeccHH
Confidence 589999854 233455565555 4789999997
No 427
>KOG1446|consensus
Probab=59.91 E-value=17 Score=31.96 Aligned_cols=50 Identities=20% Similarity=0.383 Sum_probs=37.4
Q ss_pred EEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 168 LGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 168 ~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
....++||++-++-|..+|.||+|+.+ |..+.+..-.+ ..+.-+++|...
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~-----~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPN-----GGPVSCVRFNPR 286 (311)
T ss_pred eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCC-----CCCccccccCCc
Confidence 466789999999999999999999995 77777666431 234555565543
No 428
>KOG0318|consensus
Probab=59.61 E-value=31 Score=32.72 Aligned_cols=56 Identities=21% Similarity=0.320 Sum_probs=44.1
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCceeEEEEEeecCCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMGEIAALKYYLNRT 224 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~~i~~~~w~~~~~ 224 (238)
-+.++.++||+....-...+|.|.+||- .|.++-.+.= .......|-+|.|-...+
T Consensus 192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~---~~aHkGsIfalsWsPDs~ 248 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED---SDAHKGSIFALSWSPDST 248 (603)
T ss_pred ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC---CCCccccEEEEEECCCCc
Confidence 5778999999999999999999999998 4888775542 123367899999986543
No 429
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=58.38 E-value=47 Score=27.52 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=29.9
Q ss_pred eeEEEEeCCCCCeEEEEe-eCceEEEEeCCC-Ceeeeeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAI-KGGQVHLYDYEG-NFMNKVSMW 204 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~-~~g~~~~~d~~g-~~~~~~~~~ 204 (238)
.+....|+|+++.++.+. .+|+|.+||..+ ..+..+.+.
T Consensus 250 ~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 250 RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 455678999999998875 589999999974 446666653
No 430
>KOG1036|consensus
Probab=58.04 E-value=27 Score=30.81 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=36.9
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYY 220 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~ 220 (238)
.|..+.|.+ +..+++|..+|+|+.||-++....++.-| ..+|-+|+.+
T Consensus 56 plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~igth------~~~i~ci~~~ 103 (323)
T KOG1036|consen 56 PLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQIGTH------DEGIRCIEYS 103 (323)
T ss_pred ceeeeeccC-CceEEEeccCceEEEEEecCCcceeeccC------CCceEEEEee
Confidence 677788877 68899999999999999988777766655 4445555544
No 431
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=57.71 E-value=40 Score=27.22 Aligned_cols=49 Identities=16% Similarity=0.151 Sum_probs=37.7
Q ss_pred cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccC
Q psy14042 40 KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVG 101 (238)
Q Consensus 40 ~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~ 101 (238)
++.-..++.|+.+++. ..+.+++|-|+. +.....+++.++++|+.--.|
T Consensus 45 ~~~tpe~~~W~~e~k~----~gi~v~vvSNn~---------e~RV~~~~~~l~v~fi~~A~K 93 (175)
T COG2179 45 PDATPELRAWLAELKE----AGIKVVVVSNNK---------ESRVARAAEKLGVPFIYRAKK 93 (175)
T ss_pred CCCCHHHHHHHHHHHh----cCCEEEEEeCCC---------HHHHHhhhhhcCCceeecccC
Confidence 3445678899999987 778899999976 446777888999998854443
No 432
>KOG0270|consensus
Probab=57.59 E-value=63 Score=30.00 Aligned_cols=76 Identities=21% Similarity=0.384 Sum_probs=50.2
Q ss_pred eecceEEeecccCc-eee-ec-------c--cceeeeEEEEeCCC-CCeEEEEeeCceEEEEeC--CCCeeeeeeeecCC
Q psy14042 142 VRASAVIVGSVDGN-RIW-GK-------E--FKKTSMLGVQWTSD-SQNLLFAIKGGQVHLYDY--EGNFMNKVSMWSGP 207 (238)
Q Consensus 142 ~~~~~~~~~~~~g~-rv~-g~-------~--~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~d~--~g~~~~~~~~~~~~ 207 (238)
+.+.+.+.|+.+|+ ++. ++ + +.. .+.++-|.|- +.....||.+|.++-+|. .|..+..++.|
T Consensus 297 ~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g-~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AH--- 372 (463)
T KOG0270|consen 297 YEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDG-EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH--- 372 (463)
T ss_pred CCceEEEeccccceEEeeeccCccccCceEEecc-ceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEec---
Confidence 44556666666665 322 22 1 232 5778889654 455567889999999998 48889999988
Q ss_pred CCCceeEEEEEeecCCC
Q psy14042 208 GSEMGEIAALKYYLNRT 224 (238)
Q Consensus 208 ~~~~~~i~~~~w~~~~~ 224 (238)
+.+|.||.......
T Consensus 373 ---d~~ISgl~~n~~~p 386 (463)
T KOG0270|consen 373 ---DDEISGLSVNIQTP 386 (463)
T ss_pred ---cCCcceEEecCCCC
Confidence 55677776655443
No 433
>KOG0315|consensus
Probab=57.08 E-value=36 Score=29.42 Aligned_cols=54 Identities=20% Similarity=0.358 Sum_probs=41.1
Q ss_pred eEEeecccCc-eeeecccce--------eeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeee
Q psy14042 146 AVIVGSVDGN-RIWGKEFKK--------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMN 199 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~~--------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~ 199 (238)
.--.|++||. |+|.-+.-. ..+..+...|...-+..|+.+|-|+|||-.-+..+
T Consensus 97 WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 97 WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence 3456789998 999754210 25677888899999999999999999998666433
No 434
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=56.28 E-value=11 Score=34.93 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=31.8
Q ss_pred CCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEe
Q psy14042 173 TSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKY 219 (238)
Q Consensus 173 ~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w 219 (238)
.+|...+..|+.+|-|++|..+|..+..=.+| ..||..|+=
T Consensus 76 ~~dw~~I~VG~ssG~vrfyte~G~LL~~Q~~h------~~pV~~ik~ 116 (415)
T PF14655_consen 76 GPDWTCIAVGTSSGYVRFYTENGVLLLSQLLH------EEPVLKIKC 116 (415)
T ss_pred CCCcEEEEEEecccEEEEEeccchHHHHHhcC------ccceEEEEe
Confidence 46778999999999999999999987654555 445665553
No 435
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=56.19 E-value=26 Score=31.88 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=28.9
Q ss_pred CCCEEEEEEeccCCC-cccccHHHHHHHHHhCCCeEEEEccCC
Q psy14042 61 TRPAIIVANKIDLAR-ARAVSSQDAKNLAASFKVKFIEVSVGI 102 (238)
Q Consensus 61 ~~piilVgNK~DL~~-~~~v~~~~~~~~~~~~~~~~~evSA~t 102 (238)
..|+++|+|+.|..- ......+.+.+++...+.+++.+||+.
T Consensus 199 ~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~ 241 (364)
T PRK09601 199 AKPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAKI 241 (364)
T ss_pred cCCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 489999999998521 112233455666667788999999853
No 436
>KOG1487|consensus
Probab=56.11 E-value=11 Score=32.92 Aligned_cols=54 Identities=26% Similarity=0.350 Sum_probs=38.3
Q ss_pred CCCEEEEEEeccCCCcccccHHHHHHHHHhCCCe-EEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 61 TRPAIIVANKIDLARARAVSSQDAKNLAASFKVK-FIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 61 ~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~-~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
-+|.+.+.||+|-..-++. --.+.++ ...+||-++||++++++.+.+.+...+.
T Consensus 231 yVp~iyvLNkIdsISiEEL--------dii~~iphavpISA~~~wn~d~lL~~mweyL~Lvri 285 (358)
T KOG1487|consen 231 YVPCIYVLNKIDSISIEEL--------DIIYTIPHAVPISAHTGWNFDKLLEKMWEYLKLVRI 285 (358)
T ss_pred eeeeeeeecccceeeeecc--------ceeeeccceeecccccccchHHHHHHHhhcchheEE
Confidence 4789999999984321111 1112333 6789999999999999999988766553
No 437
>KOG0272|consensus
Probab=56.08 E-value=12 Score=34.37 Aligned_cols=52 Identities=17% Similarity=0.364 Sum_probs=38.0
Q ss_pred ceEEeecccCc-eeeecccce-e--------eeEEEEeCCCCCeEEEEeeCceEEEEeCCCC
Q psy14042 145 SAVIVGSVDGN-RIWGKEFKK-T--------SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGN 196 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~~~-~--------~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~ 196 (238)
++...|..|-- |||.-+-.+ + .+..++|+|.+..+--|..+++|.|||-.+.
T Consensus 316 SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r 377 (459)
T KOG0272|consen 316 SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR 377 (459)
T ss_pred ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc
Confidence 34445555554 777655322 1 5677899999999999999999999996543
No 438
>KOG0286|consensus
Probab=56.02 E-value=35 Score=30.14 Aligned_cols=55 Identities=15% Similarity=0.288 Sum_probs=41.7
Q ss_pred EeecccCc-eeeecccce-----------eeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeee
Q psy14042 148 IVGSVDGN-RIWGKEFKK-----------TSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVS 202 (238)
Q Consensus 148 ~~~~~~g~-rv~g~~~~~-----------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~ 202 (238)
..|+.|+. |++.-+-.+ ..+..++||-.+++++-|-.+..|.|||. .|..+..|.
T Consensus 245 atGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~ 312 (343)
T KOG0286|consen 245 ATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA 312 (343)
T ss_pred eecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee
Confidence 45677777 766544422 35667899999999999999999999999 576666554
No 439
>KOG0293|consensus
Probab=54.92 E-value=21 Score=32.90 Aligned_cols=41 Identities=15% Similarity=0.410 Sum_probs=34.8
Q ss_pred eeecccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCee
Q psy14042 157 IWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFM 198 (238)
Q Consensus 157 v~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~ 198 (238)
..++.++ +.+.+..|-||+.-..-|+.++.|..||-+|+..
T Consensus 306 ~y~~~~~-~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~ 346 (519)
T KOG0293|consen 306 LYPSGLG-FSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL 346 (519)
T ss_pred hcccCcC-CCcceeEEccCCceeEecCCCCcEEEecCCcchh
Confidence 3344445 4888999999999999999999999999999974
No 440
>KOG2485|consensus
Probab=54.67 E-value=32 Score=30.67 Aligned_cols=84 Identities=20% Similarity=0.110 Sum_probs=45.7
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEE--EEccCCCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFI--EVSVGIHH 104 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~--evSA~t~~ 104 (238)
..|++|=|.|. -+-|-.+. .+.++. +..|-|||.||+||.+..+. ..-++.++.+....++ .|+.....
T Consensus 46 ~~D~iiEvrDaRiPLssrn~-----~~~~~~--~~k~riiVlNK~DLad~~~~-k~~iq~~~~~~~~~~~~~~c~~~~~~ 117 (335)
T KOG2485|consen 46 LVDCIIEVRDARIPLSSRNE-----LFQDFL--PPKPRIIVLNKMDLADPKEQ-KKIIQYLEWQNLESYIKLDCNKDCNK 117 (335)
T ss_pred cccEEEEeeccccCCccccH-----HHHHhc--CCCceEEEEecccccCchhh-hHHHHHHHhhcccchhhhhhhhhhhh
Confidence 67999999998 33222211 111122 57899999999999874322 2234444444333333 33344444
Q ss_pred CHHHHHHHHHHHHHh
Q psy14042 105 NVDELLVGILNQIRL 119 (238)
Q Consensus 105 gv~elf~~i~~~l~~ 119 (238)
++..++..+-....+
T Consensus 118 ~v~~l~~il~~~~~~ 132 (335)
T KOG2485|consen 118 QVSPLLKILTILSEE 132 (335)
T ss_pred ccccHHHHHHHHHHH
Confidence 466665555444433
No 441
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=54.66 E-value=56 Score=29.71 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=48.2
Q ss_pred EEEEEEEeCC-CcccccC----CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042 11 KVRAIIWNEQ-YEKLTSS----DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA 76 (238)
Q Consensus 11 ~v~l~iWDe~-~~~l~~~----~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~ 76 (238)
.+.+.+.|-. -..-|.. ++|.+++|.+.+-.+....++++.++++... ++.+..+|.||.+-...
T Consensus 217 ~~~~vV~Dlp~~~~~~t~~vL~~Sd~iviv~e~sl~slR~ak~lld~l~~~r~-~~~~p~lv~n~~~~~~~ 286 (366)
T COG4963 217 SFDFVVVDLPNIWTDWTRQVLSGSDEIVIVAEPSLASLRNAKELLDELKRLRP-NDPKPILVLNRVGVPKR 286 (366)
T ss_pred cCCeEEEcCCCccchHHHHHHhcCCeEEEEecccHHHHHHHHHHHHHHHHhCC-CCCCceEEeeecCCCCC
Confidence 4556777721 1111111 8999999999999999999999999988763 67778899999987543
No 442
>KOG1274|consensus
Probab=54.60 E-value=58 Score=32.90 Aligned_cols=50 Identities=12% Similarity=0.234 Sum_probs=40.2
Q ss_pred cceEEeecccCc-eeeecccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC
Q psy14042 144 ASAVIVGSVDGN-RIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE 194 (238)
Q Consensus 144 ~~~~~~~~~~g~-rv~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~ 194 (238)
-.++++...|+. ...-+..+. .+.+++++|.+..+-..+.+|.|++||-+
T Consensus 118 ~~vK~~~~~D~s~~~~lrgh~a-pVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 118 TAVKLLNLDDSSQEKVLRGHDA-PVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred eeEEEEeccccchheeecccCC-ceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 356667666665 444445665 99999999999999999999999999996
No 443
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=54.56 E-value=21 Score=20.55 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=13.8
Q ss_pred EEEEeCCCCCeEEEEeeC
Q psy14042 168 LGVQWTSDSQNLLFAIKG 185 (238)
Q Consensus 168 ~~~~~~~~~~~~~~g~~~ 185 (238)
....||||++.++|...-
T Consensus 12 ~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp EEEEE-TTSSEEEEEEEC
T ss_pred cCEEEecCCCEEEEEecC
Confidence 456899999999988765
No 444
>KOG0315|consensus
Probab=53.72 E-value=42 Score=29.08 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=36.8
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGP 207 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~ 207 (238)
.+.+.-+|||.+.+--++++.+|+||+.+|-|.-.+.+.|+.
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~ 258 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ 258 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCC
Confidence 667788999999999999999999999999977777777663
No 445
>KOG0278|consensus
Probab=52.88 E-value=17 Score=31.48 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=27.3
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE 194 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~ 194 (238)
.+-++.|+|++-+--.|+.+|.|++|-..
T Consensus 269 pVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 269 PVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred ceEEEEECCCCceeeccCCCceEEEEEec
Confidence 78999999999999999999999999875
No 446
>KOG2055|consensus
Probab=52.79 E-value=22 Score=33.08 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=35.6
Q ss_pred CceeeecccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCe
Q psy14042 154 GNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNF 197 (238)
Q Consensus 154 g~rv~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~ 197 (238)
+.-+.+=.++. .+.-+.|+.|++.++..-.+|||++||-.-+.
T Consensus 335 ~eli~s~KieG-~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 335 KELITSFKIEG-VVSDFTFSSDSKELLASGGTGEVYVWNLRQNS 377 (514)
T ss_pred hhhhheeeecc-EEeeEEEecCCcEEEEEcCCceEEEEecCCcc
Confidence 33455556785 89999999999999999999999999986554
No 447
>KOG0296|consensus
Probab=52.04 E-value=46 Score=30.18 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=42.4
Q ss_pred ccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 161 EFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
.-+. .+.++.||.|+.++--|--+|.|+||+.. |.-..++. .+...|.=|.|+..
T Consensus 104 gHKD-SVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~------~e~~dieWl~WHp~ 159 (399)
T KOG0296|consen 104 GHKD-SVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD------QEVEDIEWLKWHPR 159 (399)
T ss_pred CCCC-ceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee------cccCceEEEEeccc
Confidence 3454 89999999999999999999999999996 44455554 12446778888763
No 448
>KOG0313|consensus
Probab=51.86 E-value=26 Score=31.85 Aligned_cols=52 Identities=17% Similarity=0.300 Sum_probs=41.5
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeecCCCc
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLNRTS 225 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~~~~ 225 (238)
++..++-. ++-++-|+=+|.+++||..|+.+..+.=+ ..+|-++.|+...++
T Consensus 107 WVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Gh------t~~ik~v~~v~~n~~ 158 (423)
T KOG0313|consen 107 WVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGH------TGPIKSVAWVIKNSS 158 (423)
T ss_pred hhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecC------CcceeeeEEEecCCc
Confidence 44444545 68899999999999999999999877766 567888889876655
No 449
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=51.74 E-value=33 Score=30.51 Aligned_cols=52 Identities=12% Similarity=0.011 Sum_probs=31.3
Q ss_pred CceEEEEEEECCcchHHHH-HHHHHHHHHhcCC-CCCCEEEEEEeccCCCcccc
Q psy14042 28 DETGLIIVWMLYKPSYHRV-EQDVIRLHEEGYL-RTRPAIIVANKIDLARARAV 79 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~-~~~~~~l~~~~~~-~~~piilVgNK~DL~~~~~v 79 (238)
+.|++++|..+|...+... ...++.+....+. --.+.|+|.++.|.......
T Consensus 118 g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~ 171 (313)
T TIGR00991 118 TIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGL 171 (313)
T ss_pred CCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCC
Confidence 6889999976644334333 4455555544321 23578999999997543333
No 450
>KOG0271|consensus
Probab=51.72 E-value=30 Score=31.66 Aligned_cols=53 Identities=21% Similarity=0.390 Sum_probs=41.1
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeecCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLNR 223 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~~ 223 (238)
.+-++.|+.|.+++.-|+++.++.|||..-.-+. +.+||- +..+-+++|-...
T Consensus 411 ~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~----~DLpGh-~DEVf~vDwspDG 463 (480)
T KOG0271|consen 411 AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK----QDLPGH-ADEVFAVDWSPDG 463 (480)
T ss_pred eeEEEEeccCccEEEEcCCCceEEEEEeeeeeec----ccCCCC-CceEEEEEecCCC
Confidence 5678899999999999999999999998644331 234443 5579999997643
No 451
>KOG1954|consensus
Probab=51.25 E-value=22 Score=32.55 Aligned_cols=47 Identities=13% Similarity=0.108 Sum_probs=31.5
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA 78 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~ 78 (238)
.+|.+|++||. .-+--+.....+..++- .+-.+-+|.||.|..+.++
T Consensus 181 R~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 181 RVDRIILLFDAHKLDISDEFKRVIDALKG----HEDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred hccEEEEEechhhccccHHHHHHHHHhhC----CcceeEEEeccccccCHHH
Confidence 79999999998 33333444455555544 4456677889999865544
No 452
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=51.25 E-value=90 Score=27.83 Aligned_cols=72 Identities=22% Similarity=0.254 Sum_probs=37.7
Q ss_pred CceEEEEEEEC-C-cchHHHHHH-HHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhC--CCeEEEEccCC
Q psy14042 28 DETGLIIVWML-Y-KPSYHRVEQ-DVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF--KVKFIEVSVGI 102 (238)
Q Consensus 28 ~ad~~IlV~dv-d-~~s~~~~~~-~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~--~~~~~evSA~t 102 (238)
.-|++|-|.|. . .....+... ...++.. .+ +||.||+||.+..+ .+..+....+. ..+++.+|..
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~----AD---~ivlNK~Dlv~~~~--l~~l~~~l~~lnp~A~i~~~~~~- 185 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAF----AD---VIVLNKTDLVDAEE--LEALEARLRKLNPRARIIETSYG- 185 (323)
T ss_pred eeceEEEEEeHHHhhhhHHHHHHHHHHHHHh----Cc---EEEEecccCCCHHH--HHHHHHHHHHhCCCCeEEEcccc-
Confidence 56777877776 2 122221222 2222221 23 67889999987654 33334444443 4678887773
Q ss_pred CCCHHHH
Q psy14042 103 HHNVDEL 109 (238)
Q Consensus 103 ~~gv~el 109 (238)
+....++
T Consensus 186 ~~~~~~l 192 (323)
T COG0523 186 DVDLAEL 192 (323)
T ss_pred CCCHHHh
Confidence 3343333
No 453
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=50.12 E-value=49 Score=23.91 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=32.5
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEe
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANK 70 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK 70 (238)
.+|.++++...+..++..+..+++.+.+........+.+|.|+
T Consensus 64 ~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 64 QADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7898998888788999999998888876542214456677775
No 454
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=49.79 E-value=17 Score=36.39 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=31.0
Q ss_pred CCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEE
Q psy14042 173 TSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALK 218 (238)
Q Consensus 173 ~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~ 218 (238)
+.....+.+|+..|+|++||.-|.. .|..++. - ..||++|+
T Consensus 585 Tt~~G~iavgs~~G~IRLyd~~g~~-AKT~lp~---l-G~pI~~iD 625 (794)
T PF08553_consen 585 TTEDGYIAVGSNKGDIRLYDRLGKR-AKTALPG---L-GDPIIGID 625 (794)
T ss_pred ecCCceEEEEeCCCcEEeecccchh-hhhcCCC---C-CCCeeEEE
Confidence 4566788999999999999988843 5555552 2 35899987
No 455
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=49.53 E-value=36 Score=19.71 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=22.6
Q ss_pred eEEEEeeCceEEEEeC-CCCeeeeeeee
Q psy14042 178 NLLFAIKGGQVHLYDY-EGNFMNKVSMW 204 (238)
Q Consensus 178 ~~~~g~~~g~~~~~d~-~g~~~~~~~~~ 204 (238)
.+++++.+|.++.+|. .|..+-+.+..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 5789999999999998 59888776654
No 456
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=47.54 E-value=1.3e+02 Score=24.63 Aligned_cols=93 Identities=14% Similarity=0.068 Sum_probs=53.9
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccCCCcccc----c---HHHHHHHHHhCCCeEEEEc
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDLARARAV----S---SQDAKNLAASFKVKFIEVS 99 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~~~~~v----~---~~~~~~~~~~~~~~~~evS 99 (238)
+.+++|+|..+++-+-.+ +..++.+.+.-+. --.-++||.+..|-.....+ . ...+..+.+..+-.|+...
T Consensus 83 g~ha~llVi~~~r~t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~ 161 (212)
T PF04548_consen 83 GPHAFLLVIPLGRFTEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYHVFN 161 (212)
T ss_dssp -ESEEEEEEETTB-SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECC
T ss_pred CCeEEEEEEecCcchHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEEEEe
Confidence 899999998876333222 2333334333221 22347778888776544332 1 1235566777777777776
Q ss_pred cC------CCCCHHHHHHHHHHHHHhhh
Q psy14042 100 VG------IHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 100 A~------t~~gv~elf~~i~~~l~~~~ 121 (238)
.+ ....+.+|+..+-+.+.++.
T Consensus 162 n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 162 NKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 66 23457788887777776654
No 457
>KOG0263|consensus
Probab=47.50 E-value=30 Score=33.99 Aligned_cols=66 Identities=24% Similarity=0.476 Sum_probs=46.8
Q ss_pred eecccCc-eeeecccce---e------eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEE
Q psy14042 149 VGSVDGN-RIWGKEFKK---T------SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAAL 217 (238)
Q Consensus 149 ~~~~~g~-rv~g~~~~~---~------~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~ 217 (238)
..+.|++ |+|..+-.. + -+.++.|.|.++.+.-|+.+-.|++||.. |+-+. +.+| ...||.++
T Consensus 510 tas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR---iF~G---H~~~V~al 583 (707)
T KOG0263|consen 510 TASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR---IFTG---HKGPVTAL 583 (707)
T ss_pred ecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEE---EecC---CCCceEEE
Confidence 3466777 888876422 1 25678999999999999999999999995 77654 4444 24456665
Q ss_pred Eee
Q psy14042 218 KYY 220 (238)
Q Consensus 218 ~w~ 220 (238)
..-
T Consensus 584 ~~S 586 (707)
T KOG0263|consen 584 AFS 586 (707)
T ss_pred EEc
Confidence 543
No 458
>KOG0263|consensus
Probab=47.17 E-value=63 Score=31.84 Aligned_cols=39 Identities=10% Similarity=0.300 Sum_probs=34.3
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMW 204 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~ 204 (238)
.+..+.+||.+..+-.|..+|-|.+||-. |..+.++.=|
T Consensus 579 ~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H 618 (707)
T KOG0263|consen 579 PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH 618 (707)
T ss_pred ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc
Confidence 78889999999999999999999999995 5777766655
No 459
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=46.98 E-value=21 Score=30.48 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=22.5
Q ss_pred CeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 93 VKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 93 ~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
+|++..||+++.|++++++.+...+
T Consensus 241 ~pv~~gSa~~~~G~~~ll~~~~~~~ 265 (268)
T cd04170 241 VPVLCGSALTNIGVRELLDALVHLL 265 (268)
T ss_pred EEEEEeeCCCCcCHHHHHHHHHHhC
Confidence 5899999999999999999998654
No 460
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=46.73 E-value=44 Score=25.21 Aligned_cols=40 Identities=15% Similarity=0.303 Sum_probs=29.5
Q ss_pred CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCC
Q psy14042 60 RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIH 103 (238)
Q Consensus 60 ~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~ 103 (238)
.++|++++|.-.... -..+++.++++..++|++.+-.-.+
T Consensus 11 A~rP~il~G~g~~~~----~a~~~l~~lae~~~~Pv~~t~~~kg 50 (137)
T PF00205_consen 11 AKRPVILAGRGARRS----GAAEELRELAEKLGIPVATTPMGKG 50 (137)
T ss_dssp -SSEEEEE-HHHHHT----TCHHHHHHHHHHHTSEEEEEGGGTT
T ss_pred CCCEEEEEcCCcChh----hHHHHHHHHHHHHCCCEEecCcccc
Confidence 789999999987532 3456899999999999987765443
No 461
>KOG0279|consensus
Probab=45.91 E-value=1e+02 Score=27.10 Aligned_cols=37 Identities=14% Similarity=0.356 Sum_probs=31.9
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVS 202 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~ 202 (238)
-+..+.+++|...+.-|+-+-.|.+||.-|.-.-.+.
T Consensus 107 dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~ 143 (315)
T KOG0279|consen 107 DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIH 143 (315)
T ss_pred ceEEEEecCCCceeecCCCcceeeeeeecccEEEEEe
Confidence 4667899999999999999999999999988755443
No 462
>KOG2486|consensus
Probab=45.73 E-value=11 Score=32.99 Aligned_cols=56 Identities=23% Similarity=0.160 Sum_probs=35.7
Q ss_pred CCCCEEEEEEeccCCCccc----ccHHHHHH----HHH---hCCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042 60 RTRPAIIVANKIDLARARA----VSSQDAKN----LAA---SFKVKFIEVSVGIHHNVDELLVGILN 115 (238)
Q Consensus 60 ~~~piilVgNK~DL~~~~~----v~~~~~~~----~~~---~~~~~~~evSA~t~~gv~elf~~i~~ 115 (238)
.++|..+|.||+|...... .....+.. +.. ....|++.+|+.|+.|+++++..+++
T Consensus 247 ~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 247 NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence 7899999999999742111 00111111 111 12356788999999999998877663
No 463
>KOG1524|consensus
Probab=45.72 E-value=18 Score=34.46 Aligned_cols=54 Identities=20% Similarity=0.331 Sum_probs=44.1
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeecCCCc
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLNRTS 225 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~~~~ 225 (238)
.+.+-.|+||++-++-.-.+|.|.+|.-.|..-+.+.-. +.+|-++.|-.+..+
T Consensus 106 A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~------~~~v~c~~W~p~S~~ 159 (737)
T KOG1524|consen 106 AISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQN------EESIRCARWAPNSNS 159 (737)
T ss_pred hhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhc------CceeEEEEECCCCCc
Confidence 456678999999999999999999999999886655433 668889999776654
No 464
>KOG1523|consensus
Probab=45.64 E-value=37 Score=30.31 Aligned_cols=58 Identities=12% Similarity=0.265 Sum_probs=44.1
Q ss_pred cccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCe---eee-eeeecCCCCCceeEEEEEeecCC
Q psy14042 160 KEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNF---MNK-VSMWSGPGSEMGEIAALKYYLNR 223 (238)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~---~~~-~~~~~~~~~~~~~i~~~~w~~~~ 223 (238)
.++.| ...++.|+|.|+..-.|+..--|-|+=.++.. ++| ++. +-+++|.+++|+.|.
T Consensus 97 lRiNr-AAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikk-----PirStv~sldWhpnn 158 (361)
T KOG1523|consen 97 LRINR-AATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKK-----PIRSTVTSLDWHPNN 158 (361)
T ss_pred EEecc-ceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCC-----ccccceeeeeccCCc
Confidence 46777 89999999999999999998888887765544 221 111 237789999999875
No 465
>KOG0467|consensus
Probab=45.50 E-value=38 Score=33.75 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=37.4
Q ss_pred eEEEEEEEe----CCCcccccC---CceEEEEEEECC----cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWMLY----KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd----~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++-| -.|.+..++ =+|+++++.|+- .++..-++ +... .+...+||.||+|.
T Consensus 70 ~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlr----q~~~----~~~~~~lvinkidr 136 (887)
T KOG0467|consen 70 KDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLR----QAWI----EGLKPILVINKIDR 136 (887)
T ss_pred CceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHH----HHHH----ccCceEEEEehhhh
Confidence 457788888 566665554 688999988882 34444332 2221 56778899999993
No 466
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=44.99 E-value=33 Score=36.03 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=31.5
Q ss_pred CceEEEEEEEC-Cc---ch---H---HHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 28 DETGLIIVWML-YK---PS---Y---HRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 28 ~ad~~IlV~dv-d~---~s---~---~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
..||+|++.++ +- +. - ..++.-+.++.+.- .-..|+.||.+|+|+.
T Consensus 201 plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l-g~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 201 PLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL-GARFPVYLVLTKADLL 256 (1169)
T ss_pred CCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecchhh
Confidence 68999999998 41 11 1 23444555555433 2689999999999985
No 467
>KOG0771|consensus
Probab=44.19 E-value=37 Score=31.05 Aligned_cols=56 Identities=16% Similarity=0.369 Sum_probs=0.0
Q ss_pred ceEEeecccCc-eeee----------cccceeeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeee
Q psy14042 145 SAVIVGSVDGN-RIWG----------KEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVS 202 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g----------~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~ 202 (238)
+....+.+||. |+|- ++-++ .+...+|+||++.+.-=+++ ...|||. .|.++....
T Consensus 157 s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~-eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 157 SKLATGGTDGTLRVWEWPSMLTILEEIAHHA-EVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred CEeeeccccceEEEEecCcchhhhhhHhhcC-ccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
No 468
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=43.95 E-value=1.3e+02 Score=23.23 Aligned_cols=64 Identities=8% Similarity=0.060 Sum_probs=41.7
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEE
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFI 96 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~ 96 (238)
.+|.+|++...+..++..+..+++.+... ......+|.|+.|-.... ..+....+.+.++.+++
T Consensus 84 ~ad~viiv~~~~~~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~~~--~~~~~~~~~~~~~~~v~ 147 (179)
T cd02036 84 PADEALLVTTPEISSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDMVE--GGDMVEDIEEILGVPLL 147 (179)
T ss_pred hCCcEEEEeCCCcchHHHHHHHHHHHHHc---CCceEEEEEeCCcccccc--hhhHHHHHHHHhCCCEE
Confidence 78889988888888888888777777652 234567899999764221 12223445555666644
No 469
>KOG0306|consensus
Probab=43.61 E-value=47 Score=32.94 Aligned_cols=49 Identities=22% Similarity=0.359 Sum_probs=39.6
Q ss_pred EeecccCc-eeeecc----------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCe
Q psy14042 148 IVGSVDGN-RIWGKE----------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNF 197 (238)
Q Consensus 148 ~~~~~~g~-rv~g~~----------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~ 197 (238)
.+|=.||. ++|.-. -++ .+...+++..+-.+.-|..+|.|.|||--|.-
T Consensus 81 AVGYaDGsVqif~~~s~~~~~tfngHK~-AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~ 140 (888)
T KOG0306|consen 81 AVGYADGSVQIFSLESEEILITFNGHKA-AVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE 140 (888)
T ss_pred EEEecCceEEeeccCCCceeeeeccccc-ceEEEEEcccCceEeecCCCccEEEEEeccce
Confidence 57777777 888766 344 66777999999999999999999999986544
No 470
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=43.16 E-value=1.6e+02 Score=24.91 Aligned_cols=61 Identities=10% Similarity=-0.046 Sum_probs=38.7
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCE-EEEEEeccCCCcccccHHHHHHHHHhCCCeE
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPA-IIVANKIDLARARAVSSQDAKNLAASFKVKF 95 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~pi-ilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~ 95 (238)
.||.+|++...+..++..+...+..+.+.....+.++ -+|.|+.+. ....+++.+.++.++
T Consensus 140 ~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-------~~~~~~~~~~~g~~v 201 (270)
T PRK13185 140 YADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-------TDLIDKFNEAVGLKV 201 (270)
T ss_pred hCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-------HHHHHHHHHHcCCCE
Confidence 6898998876677778777777666654322245664 378899762 233455555565543
No 471
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=43.16 E-value=1e+02 Score=29.04 Aligned_cols=86 Identities=13% Similarity=0.154 Sum_probs=59.2
Q ss_pred CceEEEEEEEC-C-------------c-------chHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHH
Q psy14042 28 DETGLIIVWML-Y-------------K-------PSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKN 86 (238)
Q Consensus 28 ~ad~~IlV~dv-d-------------~-------~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~ 86 (238)
..|++++|-.+ . . .-|.++..-++.+++ -++|+|+..||.--.. +-....+++
T Consensus 319 ~PdavVlVATvRALK~hGG~~~~~l~~Env~avk~G~aNL~~Hi~Nikk----fgvp~VVAIN~F~tDt--~~Ei~~i~~ 392 (554)
T COG2759 319 KPDAVVLVATVRALKMHGGVPKEDLTEENVDAVKKGFANLLKHIENIKK----FGVPVVVAINKFPTDT--EAEIAAIEK 392 (554)
T ss_pred CCCeEEEeeehHHHHHcCCCChHHhcchhHHHHHHHHHHHHHHHHHHHH----cCCCeEEEeccCCCCC--HHHHHHHHH
Confidence 77899998766 2 2 224444445555555 4699999999975322 222345677
Q ss_pred HHHhCCCeE--EEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 87 LAASFKVKF--IEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 87 ~~~~~~~~~--~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
++.+.|+++ -++-++-|+|-.++-..++..+.+
T Consensus 393 ~~~~~gv~~~ls~vwakGg~Gg~eLA~kVv~~~~~ 427 (554)
T COG2759 393 LCEEHGVEVALSEVWAKGGEGGIELAKKVVEAIEQ 427 (554)
T ss_pred HHHHcCCceeehhhhhccCccHHHHHHHHHHHHhC
Confidence 788888764 456678889999999999888765
No 472
>KOG0279|consensus
Probab=42.96 E-value=82 Score=27.67 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=37.4
Q ss_pred eecccCc-eeeecccc---------eeeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCe
Q psy14042 149 VGSVDGN-RIWGKEFK---------KTSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNF 197 (238)
Q Consensus 149 ~~~~~g~-rv~g~~~~---------~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~ 197 (238)
-.+.|+. ++|.-+-- ...+.-+..|||+.+.--|-++|++.+||- +|..
T Consensus 167 s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ 226 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN 226 (315)
T ss_pred EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce
Confidence 3466776 88865421 125667789999999999999999999998 4665
No 473
>KOG1963|consensus
Probab=42.72 E-value=50 Score=32.92 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=28.1
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGN 196 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~ 196 (238)
...++..+|.+..+--|-.+|+|++|...|.
T Consensus 207 ~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~ 237 (792)
T KOG1963|consen 207 NITCVALSPNERYLAAGDSDGRILVWRDFGS 237 (792)
T ss_pred cceeEEeccccceEEEeccCCcEEEEecccc
Confidence 4567889999999999999999999999985
No 474
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=41.66 E-value=66 Score=22.11 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=23.6
Q ss_pred ceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeec
Q psy14042 186 GQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYL 221 (238)
Q Consensus 186 g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~ 221 (238)
.+|.|||+.|+.+..+.+...+ .....+.|.-
T Consensus 27 v~v~I~d~~G~~V~t~~~~~~~----~G~~~~~WdG 58 (81)
T PF13860_consen 27 VTVTIYDSNGQVVRTISLGSQS----AGEHSFTWDG 58 (81)
T ss_dssp EEEEEEETTS-EEEEEEEEECS----SEEEEEEE-S
T ss_pred EEEEEEcCCCCEEEEEEcCCcC----CceEEEEECC
Confidence 3799999999999999886432 2568899984
No 475
>KOG0307|consensus
Probab=41.54 E-value=48 Score=34.08 Aligned_cols=74 Identities=18% Similarity=0.273 Sum_probs=49.6
Q ss_pred ceEEeecccCc-eeeeccc----------------ceeeeEEEEeCCCCC-eEEEEeeCceEEEEeCCCCeeeeeeeecC
Q psy14042 145 SAVIVGSVDGN-RIWGKEF----------------KKTSMLGVQWTSDSQ-NLLFAIKGGQVHLYDYEGNFMNKVSMWSG 206 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~----------------~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~d~~g~~~~~~~~~~~ 206 (238)
|+.+-|.++|+ .+|...- . ..|...||++... ++--|-.+|||.|||-+- +-..+.. +
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~-G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn-~~tP~~~--~ 156 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHT-GPVLGLDFNPFQGNLLASGADDGEILIWDLNK-PETPFTP--G 156 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccC-CceeeeeccccCCceeeccCCCCcEEEeccCC-cCCCCCC--C
Confidence 55555677777 6665432 3 2677899999888 778999999999999864 3322222 1
Q ss_pred CCCCceeEEEEEeecC
Q psy14042 207 PGSEMGEIAALKYYLN 222 (238)
Q Consensus 207 ~~~~~~~i~~~~w~~~ 222 (238)
.-..-..|.+|.|...
T Consensus 157 ~~~~~~eI~~lsWNrk 172 (1049)
T KOG0307|consen 157 SQAPPSEIKCLSWNRK 172 (1049)
T ss_pred CCCCcccceEeccchh
Confidence 1112456899999864
No 476
>KOG0643|consensus
Probab=41.44 E-value=1.9e+02 Score=25.34 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=32.5
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMW 204 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~ 204 (238)
.+-+++.+.+...+.-|+++..+++||.. |..+.+.+..
T Consensus 54 avW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~ 93 (327)
T KOG0643|consen 54 AVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN 93 (327)
T ss_pred eEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC
Confidence 56666777799999999999999999995 8888776654
No 477
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=41.24 E-value=91 Score=32.02 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=41.6
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEE----eCCCCeeeeeeeecCCCCCceeEEEEEeecCCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLY----DYEGNFMNKVSMWSGPGSEMGEIAALKYYLNRT 224 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~----d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~~~ 224 (238)
.+...++-+|...+++++++|+|.++ |.....+-.+-. -...|.++.|-...+
T Consensus 77 ~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~------vd~GI~a~~WSPD~E 133 (928)
T PF04762_consen 77 KIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS------VDSGILAASWSPDEE 133 (928)
T ss_pred cEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE------EcCcEEEEEECCCcC
Confidence 67788888999999999999999999 555555544443 367899999987654
No 478
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=40.84 E-value=1.5e+02 Score=22.12 Aligned_cols=63 Identities=19% Similarity=0.322 Sum_probs=0.0
Q ss_pred EeecccCc-eeeeccc--------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEE
Q psy14042 148 IVGSVDGN-RIWGKEF--------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALK 218 (238)
Q Consensus 148 ~~~~~~g~-rv~g~~~--------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~ 218 (238)
++++.|.. |++-.+- ++ ....+...+ ....+|++||.|-+||. ...++-. +....+++|.
T Consensus 19 lvGs~D~~IRvf~~~e~~~Ei~e~~~-v~~L~~~~~--~~F~Y~l~NGTVGvY~~----~~RlWRi----KSK~~~~~~~ 87 (111)
T PF14783_consen 19 LVGSDDFEIRVFKGDEIVAEITETDK-VTSLCSLGG--GRFAYALANGTVGVYDR----SQRLWRI----KSKNQVTSMA 87 (111)
T ss_pred EEecCCcEEEEEeCCcEEEEEecccc-eEEEEEcCC--CEEEEEecCCEEEEEeC----cceeeee----ccCCCeEEEE
Q ss_pred eec
Q psy14042 219 YYL 221 (238)
Q Consensus 219 w~~ 221 (238)
+|+
T Consensus 88 ~~D 90 (111)
T PF14783_consen 88 FYD 90 (111)
T ss_pred EEc
No 479
>KOG0973|consensus
Probab=40.77 E-value=51 Score=33.60 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=28.5
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEG 195 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g 195 (238)
.+.++.|+||++.+.+|+.++-|.||+..+
T Consensus 71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~ 100 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLASGSDDRLVMIWERAE 100 (942)
T ss_pred ceeEEEECCCCCeEeeccCcceEEEeeecc
Confidence 889999999999999999999999999984
No 480
>KOG2106|consensus
Probab=40.55 E-value=1.1e+02 Score=29.05 Aligned_cols=58 Identities=10% Similarity=0.213 Sum_probs=43.5
Q ss_pred ceeeecccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEee
Q psy14042 155 NRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYY 220 (238)
Q Consensus 155 ~rv~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~ 220 (238)
...|.+.++. ...+.++.|.+ .+.+|+..|.-.|+|..-.-+- .++-. ..+|-.+.+.
T Consensus 399 k~~wt~~~~d-~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv--~~~~d----~~~ls~v~ys 456 (626)
T KOG2106|consen 399 KLEWTKIIED-PAECADFHPSG-VVAVGTATGRWFVLDTETQDLV--TIHTD----NEQLSVVRYS 456 (626)
T ss_pred ceeEEEEecC-ceeEeeccCcc-eEEEeeccceEEEEecccceeE--EEEec----CCceEEEEEc
Confidence 3678888896 99999999999 9999999999999999764433 33311 3456555553
No 481
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=40.14 E-value=47 Score=30.52 Aligned_cols=36 Identities=14% Similarity=0.338 Sum_probs=28.9
Q ss_pred EeeCc-eEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeecCC
Q psy14042 182 AIKGG-QVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLNR 223 (238)
Q Consensus 182 g~~~g-~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~~ 223 (238)
|...- .|+||++.|+.+.++.... ..|++|.|..+.
T Consensus 56 ~~~~p~~I~iys~sG~ll~~i~w~~------~~iv~~~wt~~e 92 (410)
T PF04841_consen 56 GSAKPNSIQIYSSSGKLLSSIPWDS------GRIVGMGWTDDE 92 (410)
T ss_pred cCCCCcEEEEECCCCCEeEEEEECC------CCEEEEEECCCC
Confidence 44444 5999999999999988873 589999998754
No 482
>KOG0641|consensus
Probab=40.13 E-value=70 Score=27.31 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=33.1
Q ss_pred ecccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeee
Q psy14042 159 GKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMN 199 (238)
Q Consensus 159 g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~ 199 (238)
+.-+|...+..+.-.|.++++.-|-++..+.+||-.|+-..
T Consensus 226 ~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~i 266 (350)
T KOG0641|consen 226 DGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMI 266 (350)
T ss_pred CCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCcee
Confidence 33444446777888999999999999999999999987643
No 483
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=39.95 E-value=1.4e+02 Score=25.76 Aligned_cols=70 Identities=13% Similarity=0.120 Sum_probs=42.3
Q ss_pred CceEEEEEEEC--CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCC
Q psy14042 28 DETGLIIVWML--YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHN 105 (238)
Q Consensus 28 ~ad~~IlV~dv--d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~g 105 (238)
..+..++|.+. ..+.+..+ ..+.+.. .+.-+|.||.|-..... .+...+...+.|+..++ +|++
T Consensus 190 ~~~~~~LVl~a~~~~~~~~~~----~~f~~~~----~~~g~IlTKlDe~~~~G----~~l~~~~~~~~Pi~~~~--~Gq~ 255 (272)
T TIGR00064 190 APDEVLLVLDATTGQNALEQA----KVFNEAV----GLTGIILTKLDGTAKGG----IILSIAYELKLPIKFIG--VGEK 255 (272)
T ss_pred CCceEEEEEECCCCHHHHHHH----HHHHhhC----CCCEEEEEccCCCCCcc----HHHHHHHHHCcCEEEEe--CCCC
Confidence 37889999988 23333322 2222211 24567889999754322 33344556688887777 8888
Q ss_pred HHHHHH
Q psy14042 106 VDELLV 111 (238)
Q Consensus 106 v~elf~ 111 (238)
++++..
T Consensus 256 ~~dl~~ 261 (272)
T TIGR00064 256 IDDLAP 261 (272)
T ss_pred hHhCcc
Confidence 877643
No 484
>PRK01742 tolB translocation protein TolB; Provisional
Probab=39.44 E-value=1.2e+02 Score=27.72 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=24.8
Q ss_pred eEEEEeCCCCCeEEEEe-eCceE--EEEeCCCCeeeeee
Q psy14042 167 MLGVQWTSDSQNLLFAI-KGGQV--HLYDYEGNFMNKVS 202 (238)
Q Consensus 167 ~~~~~~~~~~~~~~~g~-~~g~~--~~~d~~g~~~~~~~ 202 (238)
.....|+||++.+.++. .+|.+ +++|..|....++.
T Consensus 250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt 288 (429)
T PRK01742 250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLT 288 (429)
T ss_pred cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeec
Confidence 34679999999888875 57754 55576665555443
No 485
>KOG0268|consensus
Probab=39.18 E-value=38 Score=30.77 Aligned_cols=52 Identities=19% Similarity=0.292 Sum_probs=39.3
Q ss_pred eeecceEEeecccCc--e-eeecccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC
Q psy14042 141 LVRASAVIVGSVDGN--R-IWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE 194 (238)
Q Consensus 141 ~~~~~~~~~~~~~g~--r-v~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~ 194 (238)
.|+.+..|.+-.+|. . ..-|++- .+.++.||.|.+.+.-|+.+|-|++|-..
T Consensus 291 syDksIRIf~~~~~~SRdiYhtkRMq--~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 291 SYDKSIRIFPVNHGHSRDIYHTKRMQ--HVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred cccceEEEeecCCCcchhhhhHhhhh--eeeEEEEeccccEEEecCCCcceeeeecc
Confidence 366667776655554 2 2333343 68899999999999999999999999875
No 486
>PRK01742 tolB translocation protein TolB; Provisional
Probab=38.88 E-value=37 Score=31.10 Aligned_cols=36 Identities=8% Similarity=0.205 Sum_probs=28.3
Q ss_pred EEEeCCCCCeEEEEeeCceEEEE---eCCCCeeeeeeee
Q psy14042 169 GVQWTSDSQNLLFAIKGGQVHLY---DYEGNFMNKVSMW 204 (238)
Q Consensus 169 ~~~~~~~~~~~~~g~~~g~~~~~---d~~g~~~~~~~~~ 204 (238)
...|+|++..+.+++.+|.+.+| +.+|..+.++.-+
T Consensus 376 ~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~ 414 (429)
T PRK01742 376 SPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS 414 (429)
T ss_pred CceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC
Confidence 45799999999999998866654 5689888877644
No 487
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=38.72 E-value=1.5e+02 Score=22.97 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=40.2
Q ss_pred EEEEEEEe--CCCcc--c--cc-CCceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccC
Q psy14042 11 KVRAIIWN--EQYEK--L--TS-SDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDL 73 (238)
Q Consensus 11 ~v~l~iWD--e~~~~--l--~~-~~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL 73 (238)
.+.+.|.| ..... + .. ..+|.+|+|-.....+...+..++..+.+. +.+ .-+|.|+.+-
T Consensus 67 ~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~----~~~~~gvv~N~~~~ 133 (169)
T cd02037 67 ELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKV----NIPILGVVENMSYF 133 (169)
T ss_pred CCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhc----CCCeEEEEEcCCcc
Confidence 45677888 22211 1 11 258888888777888899988898888874 344 4578999875
No 488
>KOG0282|consensus
Probab=38.72 E-value=58 Score=30.50 Aligned_cols=57 Identities=12% Similarity=0.169 Sum_probs=40.0
Q ss_pred eecceEEeecccCceeeecccceeeeEEEEeCCCC-CeEEEEeeCceEEEEeCC-CCeee
Q psy14042 142 VRASAVIVGSVDGNRIWGKEFKKTSMLGVQWTSDS-QNLLFAIKGGQVHLYDYE-GNFMN 199 (238)
Q Consensus 142 ~~~~~~~~~~~~g~rv~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~d~~-g~~~~ 199 (238)
++..++.-..+.|+....=.... .+.++.+.|++ ++.+.|+.+|.|+.||.. |.+++
T Consensus 278 fD~~lKlwDtETG~~~~~f~~~~-~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 278 FDRFLKLWDTETGQVLSRFHLDK-VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred cceeeeeeccccceEEEEEecCC-CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH
Confidence 44444555555565333333443 77888999999 888899999999999995 66655
No 489
>KOG3881|consensus
Probab=38.65 E-value=1.1e+02 Score=28.02 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=39.2
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeee----------eeecCCCCCceeEEEEEeec
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKV----------SMWSGPGSEMGEIAALKYYL 221 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~----------~~~~~~~~~~~~i~~~~w~~ 221 (238)
.+..+-..|++..+|+|...|++..||-.+..+... .++|.++..-.-.+||+=|.
T Consensus 249 ~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyv 314 (412)
T KOG3881|consen 249 PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYV 314 (412)
T ss_pred cceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeE
Confidence 667777789999999999999999999987665433 34444443333444555444
No 490
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=38.58 E-value=1.2e+02 Score=28.44 Aligned_cols=70 Identities=19% Similarity=0.322 Sum_probs=46.5
Q ss_pred CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCC--CCCHHHHHHHHH
Q psy14042 39 YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGI--HHNVDELLVGIL 114 (238)
Q Consensus 39 d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t--~~gv~elf~~i~ 114 (238)
.+++|..+ +..+++|++ -+.|++++.|-.+-...+ ..+...++.+.++.+++.+++.. .+.|..++..+.
T Consensus 161 pRe~Y~eAEervI~ELk~----igKPFvillNs~~P~s~e--t~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 161 PRENYVEAEERVIEELKE----IGKPFVILLNSTKPYSEE--TQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred ChHHHHHHHHHHHHHHHH----hCCCEEEEEeCCCCCCHH--HHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence 36777666 568888887 679999999988643221 23345667778899988887753 244444444444
No 491
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=38.54 E-value=68 Score=25.97 Aligned_cols=54 Identities=15% Similarity=0.321 Sum_probs=37.3
Q ss_pred eecccCceeeecccceeeeEEEE--eCCCCCeEEEEeeCceEEEEeC-CCCeeeeeee
Q psy14042 149 VGSVDGNRIWGKEFKKTSMLGVQ--WTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSM 203 (238)
Q Consensus 149 ~~~~~g~rv~g~~~~~~~~~~~~--~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~ 203 (238)
+....|..+|...++. .....- -.+++..+++++.+|.++.+|. .|..+-+..+
T Consensus 8 ~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~ 64 (238)
T PF13360_consen 8 LDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL 64 (238)
T ss_dssp EETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC
T ss_pred EECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec
Confidence 4445777888887642 222222 3347788888899999999995 8888776665
No 492
>PRK03629 tolB translocation protein TolB; Provisional
Probab=38.42 E-value=1.1e+02 Score=27.96 Aligned_cols=72 Identities=17% Similarity=0.197 Sum_probs=0.0
Q ss_pred eEEeecccCceeeecccceeeeEEEEeCCCCCeEEEE-eeCc--eEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 146 AVIVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFA-IKGG--QVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 146 ~~~~~~~~g~rv~g~~~~~~~~~~~~~~~~~~~~~~g-~~~g--~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
..+.....|.+..=..+.. ......|+||++.+.|. ..+| +|+++|.++..+.++.-. ...+....|...
T Consensus 225 i~i~dl~~G~~~~l~~~~~-~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~------~~~~~~~~wSPD 297 (429)
T PRK03629 225 LVIQTLANGAVRQVASFPR-HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG------RSNNTEPTWFPD 297 (429)
T ss_pred EEEEECCCCCeEEccCCCC-CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC------CCCcCceEECCC
Q ss_pred CC
Q psy14042 223 RT 224 (238)
Q Consensus 223 ~~ 224 (238)
..
T Consensus 298 G~ 299 (429)
T PRK03629 298 SQ 299 (429)
T ss_pred CC
No 493
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=38.32 E-value=2.9e+02 Score=24.65 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCCCCcCccCcceeecceEEeecccCceeeecccceeeeEEEEeCCCCCeEEEEeeC
Q psy14042 106 VDELLVGILNQIRLKRSLVQTGGAQAAAPWKSNTTLVRASAVIVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKG 185 (238)
Q Consensus 106 v~elf~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rv~g~~~~~~~~~~~~~~~~~~~~~~g~~~ 185 (238)
...+-..+...+..............-.-...........+.+.....++...-..... .+....|+||++.+.+.+..
T Consensus 132 ~~~~a~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~-~~~~p~~Spdg~~la~~~~~ 210 (417)
T TIGR02800 132 LRRVAHRIADAIYEKLTGERGAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSRE-PILSPAWSPDGQKLAYVSFE 210 (417)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCC-ceecccCCCCCCEEEEEEcC
Q ss_pred c---eEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeecCCC
Q psy14042 186 G---QVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLNRT 224 (238)
Q Consensus 186 g---~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~~~ 224 (238)
+ +|++||..+.....+.-. .....++.|.....
T Consensus 211 ~~~~~i~v~d~~~g~~~~~~~~------~~~~~~~~~spDg~ 246 (417)
T TIGR02800 211 SGKPEIYVQDLATGQREKVASF------PGMNGAPAFSPDGS 246 (417)
T ss_pred CCCcEEEEEECCCCCEEEeecC------CCCccceEECCCCC
No 494
>KOG0306|consensus
Probab=37.84 E-value=97 Score=30.89 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=27.6
Q ss_pred cceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC
Q psy14042 162 FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE 194 (238)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~ 194 (238)
++. .+.++..|||++.+..|.-|..|+||=-+
T Consensus 507 l~d-dvL~v~~Spdgk~LaVsLLdnTVkVyflD 538 (888)
T KOG0306|consen 507 LED-DVLCVSVSPDGKLLAVSLLDNTVKVYFLD 538 (888)
T ss_pred ccc-cEEEEEEcCCCcEEEEEeccCeEEEEEec
Confidence 454 68899999999999999999999998544
No 495
>PF09157 TruB-C_2: Pseudouridine synthase II TruB, C-terminal; InterPro: IPR015240 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1ZL3_A 1K8W_A 1R3F_A.
Probab=37.43 E-value=25 Score=22.53 Aligned_cols=18 Identities=39% Similarity=0.735 Sum_probs=13.8
Q ss_pred EeeCceEEEEeCCCCeee
Q psy14042 182 AIKGGQVHLYDYEGNFMN 199 (238)
Q Consensus 182 g~~~g~~~~~d~~g~~~~ 199 (238)
...+|.++|||.+|.|+-
T Consensus 25 ~~~~~~vrvy~~~~~FlG 42 (58)
T PF09157_consen 25 APPDGLVRVYDEDGRFLG 42 (58)
T ss_dssp --SSSEEEEETTTTEEEE
T ss_pred CCCCceEEEECCCCEEEE
Confidence 456778999999999975
No 496
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=37.27 E-value=46 Score=28.90 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=27.0
Q ss_pred CCCEEEEEEecc--CCCcccccHHHHHHHHHhCCCeEEEEccCC
Q psy14042 61 TRPAIIVANKID--LARARAVSSQDAKNLAASFKVKFIEVSVGI 102 (238)
Q Consensus 61 ~~piilVgNK~D--L~~~~~v~~~~~~~~~~~~~~~~~evSA~t 102 (238)
..|+++|+|+.| +... .-........+...+.+++.+||+.
T Consensus 195 ~KP~i~v~N~~e~d~~~~-~~~~~~~~~~~~~~~~~~i~~sa~~ 237 (274)
T cd01900 195 AKPVLYVANVSEDDLANG-NNKVLKVREIAAKEGAEVIPISAKI 237 (274)
T ss_pred cCCceeecccCHHHhccc-cHHHHHHHHHHhcCCCeEEEeeHHH
Confidence 379999999998 4321 1112234445556788899999973
No 497
>KOG2079|consensus
Probab=37.22 E-value=92 Score=32.33 Aligned_cols=63 Identities=13% Similarity=0.249 Sum_probs=47.6
Q ss_pred eeecccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCC-CeeeeeeeecCCCCCceeEEEEEeecCC
Q psy14042 157 IWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEG-NFMNKVSMWSGPGSEMGEIAALKYYLNR 223 (238)
Q Consensus 157 v~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g-~~~~~~~~~~~~~~~~~~i~~~~w~~~~ 223 (238)
.||.+.-. .+..+.++.++..+.-|.+.|-|.+||.|- ..+.-+..+-.| ...+.-+.|..+.
T Consensus 124 ~~ne~v~~-~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap---~t~vi~v~~t~~n 187 (1206)
T KOG2079|consen 124 HQNERVQG-PVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP---VTGVIFVGRTSQN 187 (1206)
T ss_pred hcCCccCC-cceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc---cceEEEEEEeCCC
Confidence 67777775 999999999999999999999999999986 445555555333 3346666665543
No 498
>KOG0281|consensus
Probab=37.02 E-value=40 Score=30.52 Aligned_cols=63 Identities=22% Similarity=0.396 Sum_probs=44.1
Q ss_pred eeecceEEeecccCc-eeeecccc---e------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeec
Q psy14042 141 LVRASAVIVGSVDGN-RIWGKEFK---K------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWS 205 (238)
Q Consensus 141 ~~~~~~~~~~~~~g~-rv~g~~~~---~------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~ 205 (238)
+|.+...+.|..|.+ .+|.+.-- + ..+.+.++ +++++.-|+.+.+|+|||-+ |..++.+--||
T Consensus 204 QYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHc 277 (499)
T KOG0281|consen 204 QYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHC 277 (499)
T ss_pred EecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhc
Confidence 456666666677766 88887521 0 15556654 56799999999999999985 77777555554
No 499
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=36.44 E-value=2.3e+02 Score=23.81 Aligned_cols=46 Identities=15% Similarity=-0.034 Sum_probs=30.4
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCE-EEEEEeccC
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPA-IIVANKIDL 73 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~pi-ilVgNK~DL 73 (238)
.||.+|++...+..++..+...++.+.......+.++ -+|.|+.|.
T Consensus 138 ~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 138 YADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred hcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 6899998876677777777666665554321245553 478899973
No 500
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=36.35 E-value=1.4e+02 Score=24.79 Aligned_cols=43 Identities=12% Similarity=0.131 Sum_probs=33.4
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
.+|.+|++...+..++..+...+..+.... ..++.++.|+.+-
T Consensus 133 ~aD~viiv~~~~~~s~~~~~~~~~~l~~~~---~~~~~iviN~~~~ 175 (261)
T TIGR01968 133 PADEAIVVTTPEVSAVRDADRVIGLLEAKG---IEKIHLIVNRLRP 175 (261)
T ss_pred hCCeEEEEcCCCcHHHHHHHHHHHHHHHcC---CCceEEEEeCcCc
Confidence 789899888778888888888887776533 2367788899875
Done!