Query psy14042
Match_columns 238
No_of_seqs 297 out of 1843
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 18:08:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.9 4.6E-24 1.6E-28 177.7 12.2 119 2-121 52-178 (216)
2 3q72_A GTP-binding protein RAD 99.8 8.3E-20 2.8E-24 143.1 15.3 118 3-120 40-165 (166)
3 3q85_A GTP-binding protein REM 99.8 1E-19 3.5E-24 143.0 14.3 118 3-120 42-168 (169)
4 3cbq_A GTP-binding protein REM 99.8 8.4E-20 2.9E-24 148.6 13.9 119 3-121 63-190 (195)
5 2g3y_A GTP-binding protein GEM 99.8 4.3E-20 1.5E-24 153.0 12.2 119 3-121 78-205 (211)
6 2fu5_C RAS-related protein RAB 99.8 1.5E-19 5.2E-24 144.2 15.0 120 3-123 48-175 (183)
7 3t5g_A GTP-binding protein RHE 99.8 1.9E-19 6.6E-24 143.3 14.9 119 3-121 45-171 (181)
8 2nzj_A GTP-binding protein REM 99.8 2.1E-19 7.2E-24 141.8 13.7 120 3-122 43-172 (175)
9 2cjw_A GTP-binding protein GEM 99.8 5.4E-19 1.9E-23 143.4 15.4 119 3-121 47-174 (192)
10 3ihw_A Centg3; RAS, centaurin, 99.8 3E-19 1E-23 143.9 13.6 117 3-121 58-182 (184)
11 3kkq_A RAS-related protein M-R 99.8 4.5E-19 1.5E-23 141.4 13.8 117 3-119 57-182 (183)
12 2hup_A RAS-related protein RAB 99.8 4E-19 1.4E-23 145.0 13.0 118 3-121 69-195 (201)
13 2fn4_A P23, RAS-related protei 99.8 1E-18 3.5E-23 138.4 14.9 120 3-122 48-175 (181)
14 3tkl_A RAS-related protein RAB 99.8 1E-18 3.4E-23 140.7 14.9 120 3-123 56-183 (196)
15 3tw8_B RAS-related protein RAB 99.8 1E-18 3.5E-23 138.4 14.6 119 3-123 49-175 (181)
16 3q3j_B RHO-related GTP-binding 99.8 3.5E-19 1.2E-23 146.9 12.1 118 3-122 66-206 (214)
17 2a5j_A RAS-related protein RAB 99.8 1.1E-18 3.8E-23 140.7 14.8 118 3-121 61-186 (191)
18 2ew1_A RAS-related protein RAB 99.8 6.3E-19 2.1E-23 144.4 13.1 118 3-121 66-191 (201)
19 3c5c_A RAS-like protein 12; GD 99.8 4.1E-19 1.4E-23 143.2 11.8 117 3-119 60-186 (187)
20 2q3h_A RAS homolog gene family 99.8 2.1E-18 7.1E-23 139.9 15.2 118 3-122 59-198 (201)
21 1z08_A RAS-related protein RAB 99.8 1.3E-18 4.4E-23 136.7 13.5 116 3-119 46-169 (170)
22 3oes_A GTPase rhebl1; small GT 99.8 5.2E-19 1.8E-23 143.9 11.4 120 4-123 64-191 (201)
23 2a9k_A RAS-related protein RAL 99.8 1.5E-18 5.2E-23 138.1 13.9 119 3-121 57-183 (187)
24 1u8z_A RAS-related protein RAL 99.8 1.1E-18 3.7E-23 136.2 12.8 117 3-119 43-167 (168)
25 1c1y_A RAS-related protein RAP 99.8 1.1E-18 3.8E-23 136.5 12.4 115 3-117 42-165 (167)
26 2g6b_A RAS-related protein RAB 99.8 2.4E-18 8.2E-23 136.5 14.2 116 4-120 52-175 (180)
27 2gf9_A RAS-related protein RAB 99.8 3.6E-18 1.2E-22 137.3 15.4 117 3-120 62-186 (189)
28 2bcg_Y Protein YP2, GTP-bindin 99.8 4.5E-18 1.5E-22 138.6 16.1 120 3-123 48-175 (206)
29 3reg_A RHO-like small GTPase; 99.8 1.9E-18 6.5E-23 139.5 13.8 117 3-121 62-190 (194)
30 2bov_A RAla, RAS-related prote 99.8 1.9E-18 6.6E-23 140.1 13.8 120 3-122 53-180 (206)
31 2bme_A RAB4A, RAS-related prot 99.8 2E-18 7E-23 137.8 13.8 120 3-123 50-177 (186)
32 2atx_A Small GTP binding prote 99.8 2.5E-18 8.6E-23 138.6 14.2 114 3-118 57-192 (194)
33 3dz8_A RAS-related protein RAB 99.8 6.9E-19 2.4E-23 141.9 10.5 118 3-121 63-188 (191)
34 2hxs_A RAB-26, RAS-related pro 99.8 1.9E-18 6.4E-23 136.9 12.8 118 3-120 46-174 (178)
35 3cpj_B GTP-binding protein YPT 99.8 2.7E-18 9.3E-23 142.1 14.3 120 3-123 53-180 (223)
36 4dsu_A GTPase KRAS, isoform 2B 99.8 3.9E-18 1.3E-22 136.1 14.7 121 3-124 43-171 (189)
37 2j0v_A RAC-like GTP-binding pr 99.8 1.4E-18 4.8E-23 142.2 12.3 118 3-122 48-183 (212)
38 1r2q_A RAS-related protein RAB 99.8 1.7E-18 5.9E-23 135.5 12.2 114 3-117 46-167 (170)
39 2o52_A RAS-related protein RAB 99.8 2.8E-18 9.5E-23 139.7 13.8 120 3-123 65-192 (200)
40 1kao_A RAP2A; GTP-binding prot 99.8 1.6E-18 5.6E-23 135.1 11.7 117 3-119 42-166 (167)
41 2efe_B Small GTP-binding prote 99.8 3E-18 1E-22 136.0 13.3 116 3-119 52-175 (181)
42 1z0f_A RAB14, member RAS oncog 99.8 2.9E-18 9.8E-23 135.6 13.0 115 3-118 55-177 (179)
43 2j1l_A RHO-related GTP-binding 99.8 5.4E-18 1.8E-22 139.5 14.9 117 3-121 73-211 (214)
44 1z2a_A RAS-related protein RAB 99.8 3.4E-18 1.2E-22 133.8 12.8 115 3-119 45-167 (168)
45 2oil_A CATX-8, RAS-related pro 99.8 7.2E-18 2.5E-22 135.8 14.9 118 3-121 65-190 (193)
46 1x3s_A RAS-related protein RAB 99.8 5.7E-18 2E-22 136.0 13.9 118 3-121 55-180 (195)
47 2atv_A RERG, RAS-like estrogen 99.8 4E-18 1.4E-22 138.0 13.0 118 3-121 67-193 (196)
48 1mh1_A RAC1; GTP-binding, GTPa 99.8 4.4E-18 1.5E-22 135.4 12.9 116 3-120 44-181 (186)
49 2il1_A RAB12; G-protein, GDP, 99.8 3.7E-18 1.3E-22 138.0 12.5 116 3-119 66-190 (192)
50 2iwr_A Centaurin gamma 1; ANK 99.8 5.3E-18 1.8E-22 134.6 13.2 119 3-123 45-173 (178)
51 1g16_A RAS-related protein SEC 99.8 6.5E-18 2.2E-22 132.4 13.3 116 3-120 43-166 (170)
52 1m7b_A RND3/RHOE small GTP-bin 99.8 2.9E-18 1E-22 137.4 11.6 115 3-119 46-183 (184)
53 3bc1_A RAS-related protein RAB 99.8 3.7E-18 1.3E-22 136.6 11.9 112 11-122 69-188 (195)
54 1z06_A RAS-related protein RAB 99.8 3E-18 1E-22 137.8 11.4 116 3-118 60-187 (189)
55 1zbd_A Rabphilin-3A; G protein 99.8 5.5E-18 1.9E-22 137.6 13.0 119 3-122 48-174 (203)
56 1z0j_A RAB-22, RAS-related pro 99.8 6.6E-18 2.3E-22 132.4 13.0 114 3-117 46-167 (170)
57 2fg5_A RAB-22B, RAS-related pr 99.8 3.8E-18 1.3E-22 137.8 11.7 116 3-119 63-186 (192)
58 1ek0_A Protein (GTP-binding pr 99.8 4.7E-18 1.6E-22 133.1 11.1 114 3-117 43-167 (170)
59 3con_A GTPase NRAS; structural 99.8 2.1E-17 7.3E-22 132.6 15.2 118 3-121 60-185 (190)
60 2p5s_A RAS and EF-hand domain 99.8 4.8E-18 1.6E-22 138.0 11.4 115 3-118 68-196 (199)
61 3bwd_D RAC-like GTP-binding pr 99.8 3E-18 1E-22 136.1 9.8 113 4-118 48-180 (182)
62 2y8e_A RAB-protein 6, GH09086P 99.8 6.3E-18 2.2E-22 133.6 11.5 114 3-117 54-175 (179)
63 2gco_A H9, RHO-related GTP-bin 99.8 2.5E-17 8.4E-22 134.0 15.3 114 3-118 64-199 (201)
64 2f7s_A C25KG, RAS-related prot 99.8 2.7E-18 9.3E-23 141.0 9.5 112 11-122 83-202 (217)
65 2yc2_C IFT27, small RAB-relate 99.8 5E-18 1.7E-22 137.7 11.0 119 3-121 62-194 (208)
66 1gwn_A RHO-related GTP-binding 99.7 6E-18 2.1E-22 138.8 11.4 115 3-119 67-204 (205)
67 2ce2_X GTPase HRAS; signaling 99.7 2.2E-17 7.5E-22 128.3 14.0 116 3-119 42-165 (166)
68 1wms_A RAB-9, RAB9, RAS-relate 99.7 2.3E-17 7.8E-22 130.5 13.7 116 3-119 47-174 (177)
69 2fv8_A H6, RHO-related GTP-bin 99.7 4.6E-17 1.6E-21 133.0 15.7 115 4-120 65-201 (207)
70 1ky3_A GTP-binding protein YPT 99.7 3.9E-17 1.3E-21 129.3 13.6 118 4-121 49-180 (182)
71 3cph_A RAS-related protein SEC 99.7 4.4E-17 1.5E-21 132.8 14.0 118 3-122 60-185 (213)
72 3t1o_A Gliding protein MGLA; G 99.7 6.5E-18 2.2E-22 135.6 8.7 113 6-122 68-195 (198)
73 2erx_A GTP-binding protein DI- 99.7 1.2E-17 4E-22 131.0 9.5 115 3-117 42-165 (172)
74 4gzl_A RAS-related C3 botulinu 99.7 2.2E-17 7.6E-22 134.8 11.3 113 3-117 69-203 (204)
75 3l0i_B RAS-related protein RAB 99.7 1.3E-18 4.5E-23 141.3 3.9 115 3-118 73-195 (199)
76 1vg8_A RAS-related protein RAB 99.7 6.8E-17 2.3E-21 131.2 13.9 119 3-122 48-178 (207)
77 1f6b_A SAR1; gtpases, N-termin 99.7 4.8E-17 1.6E-21 132.4 12.1 110 3-116 62-196 (198)
78 3clv_A RAB5 protein, putative; 99.7 1.7E-16 5.7E-21 127.5 14.3 105 12-120 93-205 (208)
79 4djt_A GTP-binding nuclear pro 99.7 5.5E-17 1.9E-21 133.2 11.7 114 9-123 58-179 (218)
80 1m2o_B GTP-binding protein SAR 99.7 8.3E-17 2.8E-21 130.0 11.8 109 3-115 60-188 (190)
81 2gf0_A GTP-binding protein DI- 99.7 5E-17 1.7E-21 131.0 9.9 118 3-121 47-173 (199)
82 3gj0_A GTP-binding nuclear pro 99.7 5.7E-17 2E-21 133.6 10.4 116 3-122 55-178 (221)
83 4bas_A ADP-ribosylation factor 99.7 4.5E-17 1.5E-21 131.3 8.8 114 8-121 59-191 (199)
84 2wkq_A NPH1-1, RAS-related C3 99.7 2.6E-16 9.1E-21 136.7 13.9 115 3-119 194-330 (332)
85 3c5h_A Glucocorticoid receptor 99.7 9.6E-17 3.3E-21 136.2 10.3 89 28-118 162-254 (255)
86 1r8s_A ADP-ribosylation factor 99.7 1.7E-17 5.8E-22 129.6 4.9 108 10-119 42-162 (164)
87 2x77_A ADP-ribosylation factor 99.7 2.3E-16 7.8E-21 126.5 11.4 115 4-120 60-185 (189)
88 3llu_A RAS-related GTP-binding 99.7 1.3E-16 4.5E-21 129.2 10.0 106 9-117 66-195 (196)
89 1upt_A ARL1, ADP-ribosylation 99.7 1.3E-16 4.4E-21 125.2 9.6 114 4-119 45-169 (171)
90 2b6h_A ADP-ribosylation factor 99.7 1.1E-16 3.6E-21 129.6 8.2 106 11-118 72-190 (192)
91 1zj6_A ADP-ribosylation factor 99.7 6.8E-16 2.3E-20 123.7 12.1 114 3-120 53-179 (187)
92 2h57_A ADP-ribosylation factor 99.7 1.2E-15 4E-20 122.6 12.9 112 4-119 61-187 (190)
93 1fzq_A ADP-ribosylation factor 99.7 7.8E-17 2.7E-21 129.1 5.6 112 4-119 54-178 (181)
94 1moz_A ARL1, ADP-ribosylation 99.6 5.7E-16 2E-20 123.1 10.3 113 4-120 56-181 (183)
95 2h17_A ADP-ribosylation factor 99.6 2.2E-16 7.4E-21 126.1 7.9 110 3-116 58-180 (181)
96 2zej_A Dardarin, leucine-rich 99.6 1.3E-16 4.5E-21 128.0 6.6 111 9-121 53-180 (184)
97 3th5_A RAS-related C3 botulinu 99.5 1.2E-17 4.1E-22 136.0 0.0 113 3-117 69-203 (204)
98 2f9l_A RAB11B, member RAS onco 99.6 5.2E-15 1.8E-19 120.0 14.9 118 3-121 45-170 (199)
99 1ksh_A ARF-like protein 2; sma 99.6 2E-15 6.8E-20 120.6 12.0 113 4-120 56-181 (186)
100 1u0l_A Probable GTPase ENGC; p 99.6 1.7E-15 5.8E-20 131.7 10.4 96 13-114 64-168 (301)
101 1oix_A RAS-related protein RAB 99.6 1.9E-14 6.4E-19 116.3 14.9 114 3-117 69-190 (191)
102 1zd9_A ADP-ribosylation factor 99.6 3.8E-16 1.3E-20 125.6 4.8 106 11-118 66-184 (188)
103 1cip_A Protein (guanine nucleo 99.6 2.9E-15 1E-19 133.0 9.3 115 4-120 187-345 (353)
104 2xtz_A Guanine nucleotide-bind 99.6 4.9E-15 1.7E-19 131.6 9.2 112 10-121 181-347 (354)
105 3r7w_B Gtpase2, GTP-binding pr 99.6 7.6E-16 2.6E-20 135.2 3.3 109 10-121 44-176 (331)
106 3o47_A ADP-ribosylation factor 99.6 3E-15 1E-19 131.7 6.7 108 10-119 207-327 (329)
107 1azs_C GS-alpha; complex (lyas 99.6 1.1E-14 3.8E-19 131.1 10.3 116 4-121 211-387 (402)
108 1zcb_A G alpha I/13; GTP-bindi 99.5 3E-14 1E-18 126.9 9.8 116 4-121 195-355 (362)
109 3lvq_E ARF-GAP with SH3 domain 99.5 8E-15 2.7E-19 135.3 5.8 109 10-120 364-485 (497)
110 2qu8_A Putative nucleolar GTP- 99.5 1E-13 3.4E-18 114.9 11.1 93 28-122 108-208 (228)
111 3r7w_A Gtpase1, GTP-binding pr 99.5 7.8E-14 2.7E-18 121.4 9.8 111 6-118 47-180 (307)
112 3ohm_A Guanine nucleotide-bind 99.5 1.6E-14 5.5E-19 126.9 5.5 111 11-121 166-320 (327)
113 2wji_A Ferrous iron transport 99.5 7.2E-14 2.5E-18 109.9 8.5 104 4-117 44-163 (165)
114 2yv5_A YJEQ protein; hydrolase 99.4 4.4E-13 1.5E-17 116.5 11.3 102 9-114 47-164 (302)
115 2fh5_B SR-beta, signal recogni 99.4 2.6E-14 9.1E-19 116.7 2.9 112 5-116 46-213 (214)
116 2lkc_A Translation initiation 99.4 1.5E-12 5E-17 102.6 12.7 110 3-122 48-174 (178)
117 2wjg_A FEOB, ferrous iron tran 99.4 5.8E-13 2E-17 106.2 7.7 107 5-120 49-170 (188)
118 3dpu_A RAB family protein; roc 99.4 3.6E-13 1.2E-17 125.6 6.7 109 9-121 95-210 (535)
119 2cxx_A Probable GTP-binding pr 99.4 2.7E-13 9.1E-18 108.0 4.4 90 29-121 80-186 (190)
120 2gj8_A MNME, tRNA modification 99.3 7.8E-13 2.7E-17 104.9 4.8 105 3-118 45-165 (172)
121 4fid_A G protein alpha subunit 99.3 7.9E-13 2.7E-17 116.6 4.9 110 10-119 159-328 (340)
122 2dyk_A GTP-binding protein; GT 99.3 2.2E-12 7.6E-17 99.8 6.2 102 4-117 43-160 (161)
123 1lnz_A SPO0B-associated GTP-bi 99.3 6.2E-12 2.1E-16 111.2 8.1 106 12-121 206-332 (342)
124 4dcu_A GTP-binding protein ENG 99.3 7.5E-12 2.6E-16 114.5 8.5 113 3-121 236-371 (456)
125 3iev_A GTP-binding protein ERA 99.3 1.5E-11 5.1E-16 107.0 9.3 106 11-120 58-183 (308)
126 1svi_A GTP-binding protein YSX 99.3 1.2E-11 3.9E-16 99.1 7.9 86 28-118 105-194 (195)
127 3a1s_A Iron(II) transport prot 99.3 1.1E-11 3.8E-16 105.2 8.0 100 11-118 51-166 (258)
128 3b1v_A Ferrous iron uptake tra 99.2 7.7E-12 2.6E-16 107.2 5.8 103 6-117 44-162 (272)
129 1udx_A The GTP-binding protein 99.2 2.6E-11 9E-16 109.7 8.6 144 28-182 235-380 (416)
130 2hjg_A GTP-binding protein ENG 99.2 4.8E-11 1.6E-15 108.5 9.1 112 3-121 216-351 (436)
131 3pqc_A Probable GTP-binding pr 99.2 8.2E-11 2.8E-15 93.7 9.0 86 28-118 104-193 (195)
132 2e87_A Hypothetical protein PH 99.2 1.7E-10 6E-15 102.1 11.0 89 28-120 246-337 (357)
133 3qq5_A Small GTP-binding prote 99.1 4.1E-11 1.4E-15 108.7 6.1 108 4-120 76-197 (423)
134 3iby_A Ferrous iron transport 99.1 6.8E-11 2.3E-15 100.3 5.3 102 5-116 43-164 (256)
135 3gee_A MNME, tRNA modification 99.1 5.9E-10 2E-14 102.5 11.1 108 3-118 274-397 (476)
136 1nrj_B SR-beta, signal recogni 99.1 4.6E-11 1.6E-15 97.5 2.6 95 11-105 54-170 (218)
137 3k53_A Ferrous iron transport 99.0 4.5E-10 1.5E-14 95.6 8.7 107 5-120 45-167 (271)
138 4dhe_A Probable GTP-binding pr 99.0 8E-10 2.7E-14 90.3 9.5 88 28-120 115-212 (223)
139 3i8s_A Ferrous iron transport 99.0 2.8E-10 9.4E-15 97.3 6.1 83 28-118 85-168 (274)
140 1xzp_A Probable tRNA modificat 99.0 3.9E-09 1.3E-13 97.3 14.1 105 3-119 284-405 (482)
141 3cb4_D GTP-binding protein LEP 99.0 1.2E-09 3.9E-14 103.2 10.3 105 8-119 67-182 (599)
142 3sjy_A Translation initiation 99.0 9.9E-10 3.4E-14 98.9 8.8 105 11-118 74-191 (403)
143 2ywe_A GTP-binding protein LEP 99.0 1.5E-09 5.2E-14 102.3 9.8 105 8-119 69-184 (600)
144 1wf3_A GTP-binding protein; GT 98.9 9.3E-10 3.2E-14 95.5 5.4 100 11-118 54-172 (301)
145 1mky_A Probable GTP-binding pr 98.9 1.1E-08 3.9E-13 92.9 11.9 88 28-120 263-356 (439)
146 3h2y_A GTPase family protein; 98.9 1.4E-09 4.8E-14 96.9 5.7 94 17-117 55-158 (368)
147 2elf_A Protein translation elo 98.9 4.1E-09 1.4E-13 94.0 8.6 104 11-120 59-181 (370)
148 1s0u_A EIF-2-gamma, translatio 98.9 4.9E-09 1.7E-13 94.4 9.0 101 11-118 80-197 (408)
149 1wb1_A Translation elongation 98.9 4.6E-09 1.6E-13 96.8 8.8 99 12-118 73-188 (482)
150 1mky_A Probable GTP-binding pr 98.9 4.9E-09 1.7E-13 95.3 8.9 107 3-120 42-167 (439)
151 3geh_A MNME, tRNA modification 98.9 8.1E-09 2.8E-13 94.6 9.7 105 3-120 265-385 (462)
152 2qtf_A Protein HFLX, GTP-bindi 98.8 1.2E-08 4.1E-13 90.7 10.5 116 3-121 219-356 (364)
153 2qag_A Septin-2, protein NEDD5 98.8 5.7E-10 1.9E-14 99.2 1.4 110 6-121 89-235 (361)
154 2c78_A Elongation factor TU-A; 98.8 2.2E-09 7.6E-14 96.6 5.1 108 6-117 69-210 (405)
155 1g7s_A Translation initiation 98.8 4.9E-08 1.7E-12 92.0 14.1 99 13-119 71-218 (594)
156 3j2k_7 ERF3, eukaryotic polype 98.8 8.2E-08 2.8E-12 87.3 13.8 97 11-111 94-217 (439)
157 1zun_B Sulfate adenylate trans 98.8 1.1E-08 3.8E-13 92.9 7.9 98 11-111 103-216 (434)
158 1kk1_A EIF2gamma; initiation o 98.8 1.2E-08 4.1E-13 91.9 8.0 101 11-118 82-199 (410)
159 1d2e_A Elongation factor TU (E 98.8 4.6E-09 1.6E-13 94.3 5.1 105 9-118 63-194 (397)
160 3p26_A Elongation factor 1 alp 98.8 8.4E-09 2.9E-13 94.9 6.7 99 7-108 106-227 (483)
161 3tr5_A RF-3, peptide chain rel 98.8 2.2E-08 7.6E-13 93.1 9.6 61 10-75 80-148 (528)
162 3ec1_A YQEH GTPase; atnos1, at 98.8 4.4E-09 1.5E-13 93.7 4.6 96 15-117 55-160 (369)
163 1jny_A EF-1-alpha, elongation 98.7 1.7E-09 5.7E-14 98.4 1.5 103 9-111 81-205 (435)
164 1ega_A Protein (GTP-binding pr 98.7 3.6E-08 1.2E-12 85.3 9.2 86 28-118 88-174 (301)
165 3izy_P Translation initiation 98.7 2.9E-09 1E-13 99.1 2.2 101 13-118 53-167 (537)
166 3l82_B F-box only protein 4; T 98.7 1.5E-08 5E-13 83.4 5.3 97 19-118 113-222 (227)
167 2hf9_A Probable hydrogenase ni 98.7 3E-10 1E-14 93.3 -5.9 58 62-119 165-224 (226)
168 3avx_A Elongation factor TS, e 98.6 1.5E-08 5E-13 101.2 4.5 107 7-117 354-484 (1289)
169 2qnr_A Septin-2, protein NEDD5 98.6 9.7E-09 3.3E-13 89.0 2.7 82 34-120 130-215 (301)
170 1zo1_I IF2, translation initia 98.6 4.4E-09 1.5E-13 97.2 0.5 96 12-115 51-163 (501)
171 2hjg_A GTP-binding protein ENG 98.6 1.3E-08 4.6E-13 92.3 3.0 98 12-119 51-165 (436)
172 1r5b_A Eukaryotic peptide chai 98.6 9.3E-09 3.2E-13 94.3 1.9 98 12-110 121-243 (467)
173 2dy1_A Elongation factor G; tr 98.6 7.6E-08 2.6E-12 91.9 8.1 65 5-74 67-139 (665)
174 1f60_A Elongation factor EEF1A 98.6 3.5E-08 1.2E-12 90.3 5.1 97 9-109 82-202 (458)
175 3t5d_A Septin-7; GTP-binding p 98.6 6.1E-08 2.1E-12 82.5 6.0 84 28-116 115-201 (274)
176 3izq_1 HBS1P, elongation facto 98.5 3.1E-08 1E-12 93.7 2.4 101 10-110 243-363 (611)
177 3l2o_B F-box only protein 4; s 98.5 1E-07 3.6E-12 81.9 4.5 97 19-118 198-307 (312)
178 2xtp_A GTPase IMAP family memb 98.4 7.5E-07 2.6E-11 74.7 8.4 91 28-121 105-210 (260)
179 2aka_B Dynamin-1; fusion prote 98.4 4.9E-08 1.7E-12 83.4 0.5 86 28-117 161-251 (299)
180 2ged_A SR-beta, signal recogni 98.3 3.6E-07 1.2E-11 72.5 4.6 68 11-78 90-173 (193)
181 3lxx_A GTPase IMAP family memb 98.3 5.7E-07 1.9E-11 74.6 5.7 91 28-120 112-215 (239)
182 4dcu_A GTP-binding protein ENG 98.3 1.3E-07 4.3E-12 86.4 1.1 81 28-118 102-184 (456)
183 2wsm_A Hydrogenase expression/ 98.3 6.9E-07 2.4E-11 72.7 4.9 83 28-119 129-214 (221)
184 1dar_A EF-G, elongation factor 98.2 2.5E-06 8.6E-11 81.7 8.8 60 11-75 76-143 (691)
185 2j69_A Bacterial dynamin-like 98.2 1.7E-06 5.8E-11 83.0 7.5 105 13-121 175-327 (695)
186 1puj_A YLQF, conserved hypothe 98.2 2.3E-06 7.8E-11 73.3 7.4 84 28-120 23-107 (282)
187 2qag_C Septin-7; cell cycle, c 98.2 3.2E-07 1.1E-11 83.0 2.0 85 28-117 136-225 (418)
188 3mca_A HBS1, elongation factor 98.2 2.8E-07 9.5E-12 86.9 1.4 93 11-107 254-371 (592)
189 2h5e_A Peptide chain release f 98.2 3.2E-06 1.1E-10 78.7 8.5 61 10-75 80-148 (529)
190 2rdo_7 EF-G, elongation factor 98.2 6.4E-06 2.2E-10 79.1 9.9 61 10-75 80-148 (704)
191 3lxw_A GTPase IMAP family memb 98.1 4.4E-06 1.5E-10 69.9 7.2 92 28-120 105-209 (247)
192 1pui_A ENGB, probable GTP-bind 98.1 1.6E-05 5.4E-10 63.8 9.9 87 28-119 108-199 (210)
193 3p32_A Probable GTPase RV1496/ 98.1 3.4E-06 1.2E-10 74.4 6.1 99 12-119 172-284 (355)
194 3t34_A Dynamin-related protein 98.0 1.4E-06 4.7E-11 77.0 2.5 87 28-117 172-259 (360)
195 2xex_A Elongation factor G; GT 98.0 2.2E-05 7.6E-10 75.2 10.0 59 12-75 75-141 (693)
196 1wxq_A GTP-binding protein; st 98.0 7.5E-06 2.6E-10 73.5 5.9 49 61-111 214-262 (397)
197 1t9h_A YLOQ, probable GTPase E 97.9 8E-06 2.7E-10 70.9 5.2 90 19-112 74-170 (307)
198 1yrb_A ATP(GTP)binding protein 97.9 2.1E-05 7.3E-10 65.5 7.2 60 60-119 170-257 (262)
199 1jwy_B Dynamin A GTPase domain 97.9 8.9E-06 3E-10 69.8 4.2 89 28-120 167-263 (315)
200 2rcn_A Probable GTPase ENGC; Y 97.8 7.7E-05 2.6E-09 66.0 9.1 81 28-112 130-212 (358)
201 1h65_A Chloroplast outer envel 97.7 5.9E-05 2E-09 63.6 6.0 70 10-79 85-172 (270)
202 2p67_A LAO/AO transport system 97.6 3.4E-05 1.2E-09 67.6 4.6 98 12-118 149-260 (341)
203 3cnl_A YLQF, putative uncharac 97.6 2.8E-05 9.7E-10 65.8 3.7 75 28-114 21-96 (262)
204 2x2e_A Dynamin-1; nitration, h 97.5 5E-06 1.7E-10 73.2 -3.0 56 60-115 196-254 (353)
205 3def_A T7I23.11 protein; chlor 97.4 0.00012 4.1E-09 61.5 4.9 72 6-79 80-169 (262)
206 1n0u_A EF-2, elongation factor 97.3 0.00042 1.4E-08 67.8 7.7 62 8-74 94-163 (842)
207 2www_A Methylmalonic aciduria 97.2 0.00058 2E-08 60.0 6.8 98 12-119 167-279 (349)
208 1jal_A YCHF protein; nucleotid 97.2 0.004 1.4E-07 55.1 11.8 59 60-118 198-278 (363)
209 2dby_A GTP-binding protein; GD 97.1 0.0023 7.8E-08 56.7 9.5 47 61-107 201-250 (368)
210 3vqt_A RF-3, peptide chain rel 96.9 0.003 1E-07 58.8 8.5 60 12-75 100-166 (548)
211 2qm8_A GTPase/ATPase; G protei 96.7 0.0021 7.2E-08 56.1 6.2 98 12-118 148-260 (337)
212 3zvr_A Dynamin-1; hydrolase, D 96.4 0.0012 4.1E-08 63.8 2.8 83 28-116 187-275 (772)
213 2qpt_A EH domain-containing pr 96.3 0.0011 3.9E-08 61.7 1.9 48 28-79 188-236 (550)
214 2oit_A Nucleoporin 214KDA; NH2 95.9 0.051 1.7E-06 48.5 10.3 78 145-222 163-251 (434)
215 2j04_A TAU60, YPL007P, hypothe 95.7 0.055 1.9E-06 50.6 10.1 75 146-222 99-193 (588)
216 1r5m_A SIR4-interacting protei 95.6 0.06 2.1E-06 45.9 9.3 51 166-222 110-160 (425)
217 2ymu_A WD-40 repeat protein; u 95.0 0.1 3.5E-06 47.1 9.3 69 147-221 31-108 (577)
218 3mmy_A MRNA export factor; mRN 94.9 0.098 3.4E-06 43.6 8.5 71 147-223 231-327 (368)
219 3ei3_B DNA damage-binding prot 94.9 0.14 4.7E-06 43.7 9.5 73 145-223 132-216 (383)
220 3mmy_A MRNA export factor; mRN 94.9 0.18 6.3E-06 41.9 10.1 69 146-221 56-137 (368)
221 3j25_A Tetracycline resistance 94.9 0.021 7.3E-07 54.0 4.6 59 12-74 67-132 (638)
222 4e54_B DNA damage-binding prot 94.9 0.07 2.4E-06 46.9 7.7 71 145-221 178-260 (435)
223 4gqb_B Methylosome protein 50; 94.7 0.15 5.2E-06 43.7 9.1 71 144-221 93-179 (344)
224 4fn5_A EF-G 1, elongation fact 94.6 0.077 2.6E-06 50.8 7.6 60 11-74 84-150 (709)
225 3vl1_A 26S proteasome regulato 94.6 0.21 7.3E-06 42.8 9.9 70 146-222 111-192 (420)
226 4ery_A WD repeat-containing pr 94.3 0.33 1.1E-05 40.0 10.2 70 146-221 37-117 (312)
227 1got_B GT-beta; complex (GTP-b 94.2 0.37 1.3E-05 40.6 10.6 73 145-223 239-324 (340)
228 3frx_A Guanine nucleotide-bind 94.1 0.24 8.2E-06 41.5 9.0 57 146-202 79-145 (319)
229 3lrv_A PRE-mRNA-splicing facto 94.0 0.18 6.2E-06 42.6 8.2 72 146-222 141-225 (343)
230 2pbi_B Guanine nucleotide-bind 93.9 0.38 1.3E-05 41.0 10.1 72 146-223 254-338 (354)
231 2ymu_A WD-40 repeat protein; u 93.9 0.14 4.7E-06 46.2 7.6 50 166-221 18-67 (577)
232 1got_B GT-beta; complex (GTP-b 93.8 0.4 1.4E-05 40.4 10.0 72 144-221 154-236 (340)
233 1vyh_C Platelet-activating fac 93.8 0.31 1.1E-05 42.5 9.4 72 146-223 310-392 (410)
234 2xzm_R RACK1; ribosome, transl 93.7 0.42 1.4E-05 40.3 9.9 69 146-221 41-128 (343)
235 3ow8_A WD repeat-containing pr 93.7 0.37 1.3E-05 40.5 9.5 72 146-223 220-302 (321)
236 3ei3_B DNA damage-binding prot 93.6 0.38 1.3E-05 40.8 9.5 73 146-222 88-174 (383)
237 3zwl_B Eukaryotic translation 93.5 0.21 7.1E-06 41.6 7.5 51 166-222 34-85 (369)
238 3frx_A Guanine nucleotide-bind 93.5 0.46 1.6E-05 39.7 9.7 70 145-221 31-117 (319)
239 3odt_A Protein DOA1; ubiquitin 93.4 0.55 1.9E-05 38.0 9.8 73 144-223 195-278 (313)
240 4aez_A CDC20, WD repeat-contai 93.3 0.36 1.2E-05 41.6 8.9 67 146-219 105-184 (401)
241 3fm0_A Protein CIAO1; WDR39,SG 93.3 0.42 1.4E-05 40.5 9.2 73 146-222 30-116 (345)
242 3dwl_C Actin-related protein 2 93.3 0.21 7.1E-06 42.3 7.2 50 166-221 207-261 (377)
243 3dm0_A Maltose-binding peripla 93.3 0.66 2.3E-05 43.3 11.3 70 145-221 396-482 (694)
244 1sq9_A Antiviral protein SKI8; 93.2 0.47 1.6E-05 40.2 9.4 58 166-223 293-366 (397)
245 1yfq_A Cell cycle arrest prote 93.2 0.31 1.1E-05 40.3 8.0 71 146-221 25-111 (342)
246 2hes_X YDR267CP; beta-propelle 93.1 0.48 1.6E-05 39.8 9.3 47 146-193 72-136 (330)
247 1k8k_C P40, ARP2/3 complex 41 93.1 0.53 1.8E-05 39.3 9.5 51 166-222 204-255 (372)
248 2ynn_A Coatomer subunit beta'; 93.0 0.45 1.5E-05 39.4 8.8 70 146-221 27-107 (304)
249 4gqb_B Methylosome protein 50; 93.0 0.5 1.7E-05 40.4 9.3 69 146-221 229-309 (344)
250 3f3f_A Nucleoporin SEH1; struc 92.9 0.38 1.3E-05 39.3 8.2 70 146-222 25-121 (351)
251 2ynn_A Coatomer subunit beta'; 92.9 0.55 1.9E-05 38.9 9.2 71 146-222 200-281 (304)
252 3ow8_A WD repeat-containing pr 92.9 0.42 1.4E-05 40.2 8.5 70 146-221 136-216 (321)
253 4g56_B MGC81050 protein; prote 92.8 0.47 1.6E-05 40.5 8.9 71 144-221 105-191 (357)
254 4gga_A P55CDC, cell division c 92.8 0.24 8.2E-06 43.1 7.0 69 145-220 117-198 (420)
255 1erj_A Transcriptional repress 92.8 0.47 1.6E-05 40.9 8.9 71 146-223 270-364 (393)
256 2hes_X YDR267CP; beta-propelle 92.7 0.61 2.1E-05 39.1 9.4 49 146-194 26-88 (330)
257 3iz6_a 40S ribosomal protein R 92.5 0.39 1.3E-05 41.3 7.9 75 146-222 263-355 (380)
258 1gxr_A ESG1, transducin-like e 92.4 0.75 2.6E-05 37.6 9.3 71 146-222 197-276 (337)
259 4a11_B DNA excision repair pro 92.3 0.86 2.9E-05 38.4 9.8 48 146-194 201-275 (408)
260 2xzm_R RACK1; ribosome, transl 92.1 0.99 3.4E-05 37.9 9.9 69 146-221 132-223 (343)
261 3mkq_A Coatomer beta'-subunit; 92.0 0.3 1E-05 46.0 7.2 51 166-222 15-66 (814)
262 3mkq_A Coatomer beta'-subunit; 92.0 0.53 1.8E-05 44.2 8.8 71 146-223 27-109 (814)
263 4ery_A WD repeat-containing pr 91.9 0.45 1.5E-05 39.2 7.4 51 166-222 25-76 (312)
264 3f3f_A Nucleoporin SEH1; struc 91.9 0.41 1.4E-05 39.1 7.1 50 166-221 13-67 (351)
265 1k8k_C P40, ARP2/3 complex 41 91.9 0.32 1.1E-05 40.7 6.5 51 166-222 10-63 (372)
266 1sq9_A Antiviral protein SKI8; 91.9 0.93 3.2E-05 38.3 9.6 76 146-222 199-302 (397)
267 1xip_A Nucleoporin NUP159; bet 91.9 0.23 7.7E-06 44.1 5.7 72 148-222 140-224 (388)
268 3v7d_B Cell division control p 91.9 1 3.4E-05 39.3 10.0 72 143-221 131-213 (464)
269 4h5i_A Guanine nucleotide-exch 91.8 0.34 1.2E-05 41.6 6.7 51 166-222 271-323 (365)
270 3jrp_A Fusion protein of prote 91.8 0.9 3.1E-05 37.8 9.2 77 145-222 173-267 (379)
271 3k26_A Polycomb protein EED; W 91.7 0.79 2.7E-05 37.9 8.8 73 146-222 87-172 (366)
272 4aez_A CDC20, WD repeat-contai 91.6 0.76 2.6E-05 39.5 8.8 71 145-221 187-269 (401)
273 3jrp_A Fusion protein of prote 91.6 0.65 2.2E-05 38.7 8.1 73 146-222 25-112 (379)
274 3zwl_B Eukaryotic translation 91.5 0.77 2.6E-05 38.0 8.5 51 166-222 177-229 (369)
275 3odt_A Protein DOA1; ubiquitin 91.4 0.97 3.3E-05 36.5 8.9 70 145-222 156-236 (313)
276 3iz6_a 40S ribosomal protein R 91.4 0.63 2.2E-05 39.9 8.0 57 145-201 219-287 (380)
277 4e54_B DNA damage-binding prot 91.1 0.64 2.2E-05 40.6 7.8 57 145-201 133-202 (435)
278 3k26_A Polycomb protein EED; W 91.0 1.1 3.6E-05 37.1 8.8 50 166-221 71-125 (366)
279 2aq5_A Coronin-1A; WD40 repeat 90.9 0.96 3.3E-05 38.7 8.7 73 145-221 95-186 (402)
280 2pm9_A Protein WEB1, protein t 90.7 0.76 2.6E-05 39.0 7.9 50 166-221 69-123 (416)
281 1nr0_A Actin interacting prote 90.6 1.1 3.9E-05 41.1 9.5 75 147-222 163-250 (611)
282 1erj_A Transcriptional repress 90.6 0.61 2.1E-05 40.2 7.1 51 166-222 125-176 (393)
283 4gq1_A NUP37; propeller, trans 90.5 0.77 2.6E-05 39.6 7.7 70 146-221 103-196 (393)
284 3fm0_A Protein CIAO1; WDR39,SG 90.4 1.4 4.6E-05 37.2 9.1 50 146-195 75-136 (345)
285 1r5m_A SIR4-interacting protei 90.3 1.3 4.5E-05 37.4 8.9 72 144-222 217-300 (425)
286 3vu4_A KMHSV2; beta-propeller 90.0 0.87 3E-05 38.7 7.5 53 166-222 197-251 (355)
287 2pm7_B Protein transport prote 90.0 0.67 2.3E-05 38.2 6.6 49 166-220 11-62 (297)
288 2pbi_B Guanine nucleotide-bind 90.0 2.3 7.9E-05 36.0 10.3 37 166-202 156-193 (354)
289 1vyh_C Platelet-activating fac 89.9 0.76 2.6E-05 39.9 7.3 50 166-221 110-160 (410)
290 3v7d_B Cell division control p 89.8 1.5 5.2E-05 38.1 9.2 70 145-220 281-361 (464)
291 1gxr_A ESG1, transducin-like e 89.6 2.9 9.8E-05 33.9 10.3 70 146-223 238-318 (337)
292 1yfq_A Cell cycle arrest prote 89.6 0.59 2E-05 38.6 6.0 51 166-222 13-67 (342)
293 3i2n_A WD repeat-containing pr 89.5 1.2 4.2E-05 36.7 7.9 49 145-194 225-290 (357)
294 4a11_B DNA excision repair pro 89.5 2.8 9.5E-05 35.1 10.3 52 145-197 57-133 (408)
295 3dw8_B Serine/threonine-protei 89.5 0.56 1.9E-05 40.4 6.0 31 166-196 30-60 (447)
296 1pgu_A Actin interacting prote 89.4 1.3 4.5E-05 39.7 8.6 71 146-223 502-596 (615)
297 3gre_A Serine/threonine-protei 89.4 1.8 6.2E-05 37.3 9.2 70 146-221 184-267 (437)
298 2pm7_B Protein transport prote 89.3 1.9 6.5E-05 35.4 8.9 50 146-196 23-87 (297)
299 3dm0_A Maltose-binding peripla 89.0 2.1 7.1E-05 39.8 9.9 75 146-222 444-528 (694)
300 3bg1_A Protein SEC13 homolog; 88.8 1.4 4.7E-05 36.6 7.8 53 145-198 229-298 (316)
301 4ggc_A P55CDC, cell division c 88.7 1.3 4.5E-05 35.9 7.5 39 166-204 69-108 (318)
302 3jro_A Fusion protein of prote 88.3 1.3 4.6E-05 41.9 8.1 73 146-222 23-110 (753)
303 3i2n_A WD repeat-containing pr 88.0 2.3 7.7E-05 35.0 8.6 70 146-221 131-219 (357)
304 3vl1_A 26S proteasome regulato 88.0 2.8 9.5E-05 35.6 9.4 48 170-222 253-301 (420)
305 4g56_B MGC81050 protein; prote 87.9 2.4 8.1E-05 36.0 8.9 69 146-221 241-321 (357)
306 3sfz_A APAF-1, apoptotic pepti 87.7 2.7 9.2E-05 41.7 10.3 70 146-221 629-709 (1249)
307 2xyi_A Probable histone-bindin 87.7 3.2 0.00011 36.0 9.8 73 145-223 245-333 (430)
308 2j04_A TAU60, YPL007P, hypothe 87.4 1.2 4.1E-05 41.6 7.0 54 166-222 87-140 (588)
309 4a9a_A Ribosome-interacting GT 87.1 3.2 0.00011 36.5 9.3 82 28-111 149-240 (376)
310 2aq5_A Coronin-1A; WD40 repeat 87.1 1.6 5.4E-05 37.4 7.3 52 166-223 83-143 (402)
311 3lrv_A PRE-mRNA-splicing facto 86.8 2.4 8.1E-05 35.4 8.1 32 166-197 127-160 (343)
312 3gre_A Serine/threonine-protei 86.8 2.4 8.3E-05 36.4 8.3 56 145-201 77-152 (437)
313 3bg1_A Protein SEC13 homolog; 86.7 1 3.6E-05 37.4 5.8 50 166-221 15-67 (316)
314 1p22_A F-BOX/WD-repeat protein 86.0 3.5 0.00012 35.6 9.0 69 144-220 143-222 (435)
315 3dwl_C Actin-related protein 2 85.6 1.4 4.9E-05 36.9 6.1 29 166-194 148-176 (377)
316 2pm9_A Protein WEB1, protein t 85.6 1.3 4.6E-05 37.5 6.0 50 166-221 264-315 (416)
317 4aow_A Guanine nucleotide-bind 85.5 3 0.0001 34.0 8.0 50 147-196 188-247 (340)
318 2xyi_A Probable histone-bindin 85.3 5.2 0.00018 34.6 9.8 71 146-222 196-288 (430)
319 4aow_A Guanine nucleotide-bind 85.2 1.9 6.6E-05 35.2 6.7 56 166-222 40-97 (340)
320 3jro_A Fusion protein of prote 84.9 3.7 0.00013 38.8 9.2 73 146-222 69-156 (753)
321 3dw8_B Serine/threonine-protei 84.9 2.5 8.6E-05 36.2 7.5 59 145-204 240-326 (447)
322 2vdu_B TRNA (guanine-N(7)-)-me 84.2 4.6 0.00016 35.1 9.0 69 148-222 119-206 (450)
323 2j04_B YDR362CP, TAU91; beta p 84.1 5.7 0.00019 36.1 9.8 49 145-194 226-295 (524)
324 2oaj_A Protein SNI1; WD40 repe 84.0 4.3 0.00015 39.5 9.4 75 147-221 72-161 (902)
325 4ggc_A P55CDC, cell division c 83.3 7 0.00024 31.4 9.2 51 166-222 242-295 (318)
326 1pgu_A Actin interacting prote 83.1 2.1 7.2E-05 38.3 6.4 50 167-222 67-127 (615)
327 2hqs_A Protein TOLB; TOLB, PAL 82.9 2.9 0.0001 36.4 7.1 53 166-224 355-410 (415)
328 2vdu_B TRNA (guanine-N(7)-)-me 82.6 3 0.0001 36.3 7.1 52 166-221 104-159 (450)
329 1nr0_A Actin interacting prote 82.4 3.6 0.00012 37.7 7.8 52 166-221 61-113 (611)
330 2oaj_A Protein SNI1; WD40 repe 80.9 3.2 0.00011 40.4 7.2 50 166-221 19-68 (902)
331 2ovr_B FBW7, F-BOX/WD repeat p 80.8 8.4 0.00029 33.2 9.3 69 144-220 129-208 (445)
332 2w18_A PALB2, fancn, partner a 80.7 3.2 0.00011 36.2 6.4 47 147-193 298-355 (356)
333 4gga_A P55CDC, cell division c 80.6 8.2 0.00028 33.1 9.1 67 150-222 297-375 (420)
334 3sfz_A APAF-1, apoptotic pepti 80.4 3.6 0.00012 40.8 7.4 51 166-222 617-668 (1249)
335 3vu4_A KMHSV2; beta-propeller 80.0 3.9 0.00013 34.5 6.7 49 146-195 209-271 (355)
336 4h5i_A Guanine nucleotide-exch 79.6 2 6.7E-05 36.7 4.7 54 146-199 283-347 (365)
337 1pby_B Quinohemoprotein amine 79.5 5.9 0.0002 32.1 7.5 41 166-206 281-322 (337)
338 2ojh_A Uncharacterized protein 79.4 5.6 0.00019 31.2 7.1 32 166-198 43-75 (297)
339 2hqs_A Protein TOLB; TOLB, PAL 78.1 7 0.00024 33.9 7.9 36 166-201 180-218 (415)
340 2j04_B YDR362CP, TAU91; beta p 76.2 8.6 0.00029 34.9 8.2 70 146-221 325-407 (524)
341 1l0q_A Surface layer protein; 75.7 15 0.00052 30.5 9.2 50 166-222 33-84 (391)
342 2oit_A Nucleoporin 214KDA; NH2 75.6 6.3 0.00022 34.6 6.9 52 166-222 151-203 (434)
343 1l0q_A Surface layer protein; 74.8 21 0.00072 29.6 9.9 32 166-197 75-107 (391)
344 1jmx_B Amine dehydrogenase; ox 73.5 6.5 0.00022 32.1 6.1 38 167-204 297-335 (349)
345 1p22_A F-BOX/WD-repeat protein 73.2 17 0.00058 31.1 9.1 67 145-219 224-304 (435)
346 3end_A Light-independent proto 71.9 10 0.00035 31.5 7.0 63 28-97 179-242 (307)
347 4gq1_A NUP37; propeller, trans 70.8 6.4 0.00022 33.7 5.6 51 145-195 157-218 (393)
348 3bws_A Protein LP49; two-domai 70.5 36 0.0012 28.7 10.4 36 166-201 255-299 (433)
349 2xdw_A Prolyl endopeptidase; a 70.1 8.2 0.00028 36.0 6.6 38 166-203 126-168 (710)
350 3bws_A Protein LP49; two-domai 70.1 9.1 0.00031 32.5 6.5 50 166-221 171-221 (433)
351 2j37_W Signal recognition part 69.6 2.5 8.4E-05 38.7 2.8 77 28-116 213-310 (504)
352 2ovr_B FBW7, F-BOX/WD repeat p 66.8 12 0.00041 32.2 6.6 34 166-201 364-398 (445)
353 3cwq_A Para family chromosome 64.5 23 0.00079 27.6 7.4 64 28-96 90-153 (209)
354 2ecf_A Dipeptidyl peptidase IV 64.1 8.2 0.00028 35.7 5.2 29 167-196 111-139 (741)
355 2ojh_A Uncharacterized protein 63.9 25 0.00085 27.3 7.5 50 167-222 131-183 (297)
356 1ni3_A YCHF GTPase, YCHF GTP-b 63.4 11 0.00039 33.1 5.8 58 61-118 224-306 (392)
357 4a9a_A Ribosome-interacting GT 62.8 12 0.0004 32.8 5.7 55 60-121 248-302 (376)
358 2gop_A Trilobed protease; beta 62.3 29 0.00099 28.3 7.9 50 166-222 60-114 (347)
359 2v2f_A Penicillin binding prot 62.0 4.2 0.00014 21.0 1.7 16 186-201 5-20 (26)
360 3scy_A Hypothetical bacterial 62.0 32 0.0011 28.4 8.2 30 167-196 213-243 (361)
361 3no2_A Uncharacterized protein 57.1 42 0.0014 27.2 8.0 51 152-203 153-204 (276)
362 1ri6_A Putative isomerase YBHE 56.8 20 0.00067 28.9 5.9 29 166-194 39-68 (343)
363 3e5z_A Putative gluconolactona 56.1 19 0.00066 28.9 5.7 35 166-201 29-64 (296)
364 4dzz_A Plasmid partitioning pr 56.1 13 0.00045 28.4 4.4 65 28-96 97-162 (206)
365 3no2_A Uncharacterized protein 56.0 46 0.0016 26.9 8.0 58 146-204 58-117 (276)
366 1ri6_A Putative isomerase YBHE 55.5 26 0.00088 28.2 6.4 29 167-195 131-160 (343)
367 1k32_A Tricorn protease; prote 55.2 54 0.0019 31.9 9.6 38 166-203 54-97 (1045)
368 1tq4_A IIGP1, interferon-induc 54.7 10 0.00035 33.6 3.9 62 60-121 174-255 (413)
369 1z68_A Fibroblast activation p 54.0 11 0.00036 34.9 4.1 32 167-198 62-102 (719)
370 1yr2_A Prolyl oligopeptidase; 53.7 17 0.00058 34.1 5.5 34 166-199 164-202 (741)
371 2p9w_A MAL S 1 allergenic prot 53.6 30 0.001 29.8 6.6 54 167-220 15-71 (334)
372 2dg1_A DRP35, lactonase; beta 52.3 38 0.0013 27.4 7.0 35 166-200 46-80 (333)
373 3ea0_A ATPase, para family; al 52.0 67 0.0023 25.0 8.2 65 28-98 140-204 (245)
374 2z3z_A Dipeptidyl aminopeptida 52.0 27 0.00092 32.0 6.5 35 167-201 183-250 (706)
375 4a5s_A Dipeptidyl peptidase 4 51.7 20 0.00069 33.5 5.7 33 170-202 67-108 (740)
376 3o4h_A Acylamino-acid-releasin 51.2 20 0.00068 32.1 5.4 34 168-201 153-190 (582)
377 2qag_B Septin-6, protein NEDD5 51.0 8.1 0.00028 34.5 2.6 41 60-100 175-217 (427)
378 3c5m_A Oligogalacturonate lyas 50.8 18 0.00062 30.0 4.7 31 170-200 86-116 (396)
379 1nir_A Nitrite reductase; hemo 50.0 53 0.0018 29.6 8.1 35 168-202 182-219 (543)
380 1yiq_A Quinohemoprotein alcoho 49.8 21 0.00072 33.5 5.5 60 146-206 457-517 (689)
381 3dm5_A SRP54, signal recogniti 49.6 30 0.001 31.0 6.1 66 28-107 212-279 (443)
382 3vgz_A Uncharacterized protein 49.1 80 0.0027 25.3 8.5 37 167-203 187-224 (353)
383 1cp2_A CP2, nitrogenase iron p 47.9 62 0.0021 25.7 7.5 65 28-96 140-205 (269)
384 1k32_A Tricorn protease; prote 47.4 57 0.0019 31.8 8.3 35 167-201 423-467 (1045)
385 2ecf_A Dipeptidyl peptidase IV 47.3 25 0.00086 32.4 5.5 33 166-198 38-76 (741)
386 3sop_A Neuronal-specific septi 46.7 23 0.00078 29.2 4.6 65 28-97 111-178 (270)
387 1jmx_B Amine dehydrogenase; ox 46.5 39 0.0013 27.2 6.1 29 167-195 94-134 (349)
388 1xfd_A DIP, dipeptidyl aminope 46.3 34 0.0012 31.3 6.3 18 168-185 176-193 (723)
389 3k9g_A PF-32 protein; ssgcid, 45.8 41 0.0014 26.9 6.1 43 28-72 166-208 (267)
390 3pe7_A Oligogalacturonate lyas 44.7 24 0.00082 29.3 4.6 31 169-199 85-115 (388)
391 1kb0_A Quinohemoprotein alcoho 44.5 28 0.00095 32.6 5.4 60 145-205 458-518 (677)
392 2ph1_A Nucleotide-binding prot 44.5 30 0.001 27.9 5.0 66 28-97 152-224 (262)
393 1kv9_A Type II quinohemoprotei 44.5 40 0.0014 31.4 6.4 59 146-205 440-499 (668)
394 2gop_A Trilobed protease; beta 44.4 42 0.0014 27.3 6.0 36 167-202 106-169 (347)
395 4a5s_A Dipeptidyl peptidase 4 44.2 43 0.0015 31.2 6.6 36 166-202 113-148 (740)
396 1z68_A Fibroblast activation p 44.1 36 0.0012 31.3 6.0 34 166-200 111-144 (719)
397 1hyq_A MIND, cell division inh 43.5 88 0.003 24.7 7.8 62 28-96 132-193 (263)
398 3pqh_A Gene product 138; beta- 43.4 15 0.00053 27.0 2.7 24 175-199 28-51 (127)
399 3scy_A Hypothetical bacterial 43.2 55 0.0019 26.8 6.6 48 167-220 308-360 (361)
400 1pby_B Quinohemoprotein amine 42.6 50 0.0017 26.3 6.2 35 166-202 136-171 (337)
401 3dsm_A Uncharacterized protein 42.6 31 0.0011 28.5 5.0 41 166-206 268-313 (328)
402 3pe7_A Oligogalacturonate lyas 42.3 26 0.0009 29.0 4.5 32 170-201 41-75 (388)
403 1q7f_A NHL, brain tumor CG1071 41.3 82 0.0028 24.7 7.2 37 166-202 31-67 (286)
404 3hfq_A Uncharacterized protein 41.0 91 0.0031 25.2 7.6 27 168-194 190-217 (347)
405 3o4h_A Acylamino-acid-releasin 40.0 24 0.00082 31.6 4.1 38 165-202 22-60 (582)
406 3u4y_A Uncharacterized protein 38.5 40 0.0014 27.1 4.9 32 170-201 278-310 (331)
407 3bfv_A CAPA1, CAPB2, membrane 38.2 50 0.0017 27.0 5.5 43 28-74 214-257 (271)
408 2v3c_C SRP54, signal recogniti 38.1 27 0.00094 31.0 4.0 60 28-99 210-272 (432)
409 1qks_A Cytochrome CD1 nitrite 37.7 1E+02 0.0036 28.0 8.0 37 166-202 198-237 (567)
410 3u4y_A Uncharacterized protein 37.5 1.5E+02 0.0052 23.4 8.5 29 169-197 44-73 (331)
411 2afh_E Nitrogenase iron protei 37.3 1.3E+02 0.0044 24.3 7.9 65 28-96 143-208 (289)
412 1uoz_A Putative cellulase; hyd 36.8 42 0.0014 28.6 4.7 40 28-69 89-139 (315)
413 1g3q_A MIND ATPase, cell divis 36.1 74 0.0025 24.6 6.0 45 28-75 133-177 (237)
414 3vgz_A Uncharacterized protein 35.7 1.3E+02 0.0045 24.0 7.7 37 167-203 233-271 (353)
415 1j8m_F SRP54, signal recogniti 35.6 67 0.0023 26.7 5.9 69 28-109 212-281 (297)
416 3azo_A Aminopeptidase; POP fam 35.1 38 0.0013 30.7 4.6 30 166-195 131-170 (662)
417 2w18_A PALB2, fancn, partner a 34.9 58 0.002 28.2 5.5 28 175-202 192-220 (356)
418 2z3z_A Dipeptidyl aminopeptida 34.6 62 0.0021 29.5 6.0 31 166-196 259-294 (706)
419 3e5z_A Putative gluconolactona 34.6 51 0.0018 26.2 4.9 34 169-204 222-255 (296)
420 3hxj_A Pyrrolo-quinoline quino 34.0 58 0.002 26.1 5.2 28 176-203 265-292 (330)
421 1jof_A Carboxy-CIS,CIS-muconat 33.8 62 0.0021 26.9 5.5 49 171-221 313-365 (365)
422 1q7f_A NHL, brain tumor CG1071 33.8 1.6E+02 0.0055 22.9 7.9 39 166-204 208-247 (286)
423 3c5m_A Oligogalacturonate lyas 33.4 63 0.0022 26.5 5.4 33 166-198 239-276 (396)
424 3dr2_A Exported gluconolactona 33.1 81 0.0028 25.4 6.0 32 166-197 46-78 (305)
425 1xfd_A DIP, dipeptidyl aminope 32.8 44 0.0015 30.5 4.7 33 167-199 63-104 (723)
426 3q7m_A Lipoprotein YFGL, BAMB; 32.3 95 0.0032 25.6 6.4 30 175-204 102-132 (376)
427 3hfq_A Uncharacterized protein 31.5 1.2E+02 0.0041 24.5 6.8 28 167-194 143-170 (347)
428 1flg_A Protein (quinoprotein e 30.3 58 0.002 29.8 5.0 58 148-206 470-528 (582)
429 3fvz_A Peptidyl-glycine alpha- 30.1 1.3E+02 0.0044 24.5 6.8 31 166-196 92-122 (329)
430 1wcv_1 SOJ, segregation protei 29.0 88 0.003 24.8 5.4 47 28-74 133-182 (257)
431 3hxj_A Pyrrolo-quinoline quino 28.9 1.1E+02 0.0038 24.3 6.1 27 177-203 226-252 (330)
432 2ohf_A Protein OLA1, GTP-bindi 28.9 69 0.0024 28.1 5.0 42 61-102 222-267 (396)
433 3kl4_A SRP54, signal recogniti 28.7 72 0.0025 28.3 5.1 66 28-107 211-278 (433)
434 2ad6_A Methanol dehydrogenase 28.6 67 0.0023 29.2 5.1 59 146-205 446-505 (571)
435 3kjh_A CO dehydrogenase/acetyl 28.1 2E+02 0.0069 22.0 9.7 58 12-72 132-194 (254)
436 1w6s_A Methanol dehydrogenase 27.8 71 0.0024 29.5 5.1 60 146-206 455-515 (599)
437 2fp8_A Strictosidine synthase; 27.5 60 0.0021 26.4 4.3 32 168-199 22-53 (322)
438 3iuj_A Prolyl endopeptidase; h 27.3 99 0.0034 28.5 6.1 32 166-197 130-166 (693)
439 2ghs_A AGR_C_1268P; regucalcin 27.1 1.4E+02 0.0047 24.4 6.5 36 166-201 50-86 (326)
440 1nir_A Nitrite reductase; hemo 26.3 1E+02 0.0035 27.7 5.8 37 166-202 480-522 (543)
441 2bkl_A Prolyl endopeptidase; m 26.1 79 0.0027 29.1 5.2 32 166-197 122-158 (695)
442 3q9l_A Septum site-determining 25.9 55 0.0019 25.8 3.6 46 28-73 135-185 (260)
443 1ytl_A Acetyl-COA decarboxylas 25.9 78 0.0027 24.3 4.3 33 60-98 35-67 (174)
444 3q7m_A Lipoprotein YFGL, BAMB; 25.8 67 0.0023 26.6 4.3 28 176-203 318-346 (376)
445 3cf4_G Acetyl-COA decarboxylas 25.6 63 0.0022 24.4 3.7 44 47-98 25-68 (170)
446 2hz6_A Endoplasmic reticulum t 24.7 37 0.0013 28.8 2.5 53 148-202 23-76 (369)
447 2xdw_A Prolyl endopeptidase; a 24.6 2.8E+02 0.0094 25.4 8.6 31 167-197 173-219 (710)
448 3sjl_D Methylamine dehydrogena 23.9 3.1E+02 0.01 23.7 8.3 43 166-208 332-377 (386)
449 2bkl_A Prolyl endopeptidase; m 23.9 1.6E+02 0.0055 26.9 6.9 37 166-202 228-268 (695)
450 1kv9_A Type II quinohemoprotei 23.9 1.1E+02 0.0038 28.3 5.7 59 145-203 271-342 (668)
451 1xip_A Nucleoporin NUP159; bet 23.6 1.6E+02 0.0054 25.5 6.4 16 179-194 139-154 (388)
452 2y9w_C Lectin-like fold protei 23.4 29 0.00098 24.7 1.2 29 166-194 16-44 (150)
453 2bog_X Endoglucanase E-2; hydr 23.0 82 0.0028 26.4 4.1 38 29-68 66-114 (286)
454 3azo_A Aminopeptidase; POP fam 22.5 99 0.0034 27.8 5.0 31 166-196 243-275 (662)
455 3pzx_A Formate--tetrahydrofola 22.2 78 0.0027 29.0 4.0 69 45-119 362-430 (557)
456 2hz6_A Endoplasmic reticulum t 22.1 91 0.0031 26.3 4.5 29 175-203 8-37 (369)
457 2obn_A Hypothetical protein; s 22.0 1.5E+02 0.005 25.5 5.7 82 28-114 253-347 (349)
458 3g4e_A Regucalcin; six bladed 21.9 2.9E+02 0.0098 21.9 7.4 36 168-204 202-239 (297)
459 2oze_A ORF delta'; para, walke 21.7 1.7E+02 0.0058 23.6 5.9 63 28-92 176-241 (298)
460 1jof_A Carboxy-CIS,CIS-muconat 21.5 3.3E+02 0.011 22.2 8.8 32 166-197 194-229 (365)
461 1pjx_A Dfpase, DIISOPROPYLFLUO 21.4 2.5E+02 0.0086 21.8 6.9 49 168-222 21-81 (314)
462 1v74_A Colicin D; colicin D - 21.3 1E+02 0.0035 21.8 3.7 31 175-205 63-93 (107)
463 2zay_A Response regulator rece 20.5 2E+02 0.007 19.7 5.6 78 28-121 52-130 (147)
464 2hbp_A Cytoskeleton assembly c 20.4 1E+02 0.0036 19.9 3.3 22 178-199 19-40 (68)
465 1rwi_B Serine/threonine-protei 20.3 1.2E+02 0.004 23.3 4.5 32 168-200 70-101 (270)
466 3fvz_A Peptidyl-glycine alpha- 20.2 1.7E+02 0.0057 23.7 5.6 37 166-202 144-182 (329)
467 3qqz_A Putative uncharacterize 20.1 1.8E+02 0.006 23.6 5.6 38 166-203 28-66 (255)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.91 E-value=4.6e-24 Score=177.65 Aligned_cols=119 Identities=23% Similarity=0.347 Sum_probs=108.0
Q ss_pred ccEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 2 NQSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 2 ~k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
.+++.+++..|+++||| |+|+.+++. +++++|+|||+ +++||+.+..|+..+..+.. .++|++|||||+||
T Consensus 52 ~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl 130 (216)
T 4dkx_A 52 SKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDL 130 (216)
T ss_dssp EEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTC
T ss_pred EEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccch
Confidence 35778899999999999 999999877 99999999999 99999999999999987753 68999999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
.+.++++.+++++++++++++|+||||++|.||+++|..|++.+....
T Consensus 131 ~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~ 178 (216)
T 4dkx_A 131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGME 178 (216)
T ss_dssp GGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC----
T ss_pred HhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999998886543
No 2
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.83 E-value=8.3e-20 Score=143.14 Aligned_cols=118 Identities=30% Similarity=0.483 Sum_probs=97.9
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.+|| ++|+.++.. ++|++++|||+ ++.+|+.+..|+.++.+.....+.|+++|+||+|+.
T Consensus 40 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 119 (166)
T 3q72_A 40 RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119 (166)
T ss_dssp EEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC
T ss_pred EEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc
Confidence 4677899999999999 778777766 99999999999 999999999999999876545789999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
..+.+..+++..++...+++++++||++|.|++++|..|++.+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp SSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 8889999999999999999999999999999999999999988654
No 3
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.83 E-value=1e-19 Score=143.02 Aligned_cols=118 Identities=31% Similarity=0.523 Sum_probs=101.7
Q ss_pred cEEEECCeEEEEEEEe----CCCcc-cccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEK-LTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~-l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+.+.+|| ++|+. ++.. ++|++++|||+ ++++|+.+..|+.++.......+.|+++|+||+|+
T Consensus 42 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 121 (169)
T 3q85_A 42 RRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121 (169)
T ss_dssp EEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTC
T ss_pred EEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcch
Confidence 5677899999999999 66665 4443 89999999999 99999999999999988765568999999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
...+.+..+++..+++..+++|+++||++|.|++++|..+++.+...
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp GGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred hhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 98889999999999999999999999999999999999999988654
No 4
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.83 E-value=8.4e-20 Score=148.58 Aligned_cols=119 Identities=31% Similarity=0.528 Sum_probs=104.9
Q ss_pred cEEEECCeEEEEEEEe----CCCcc-cccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEK-LTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~-l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+.+++|| ++|+. ++.. ++|++|+|||+ ++.+|+.+..|+.++.......+.|++|||||+||
T Consensus 63 ~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 142 (195)
T 3cbq_A 63 RRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 142 (195)
T ss_dssp EEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTC
T ss_pred EEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhc
Confidence 4677899999999999 55554 4443 89999999999 99999999999999987764468999999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
...+.+..+++..+++..+++|+++||++|.|++++|..|++.+...+
T Consensus 143 ~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 143 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp TTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHTTC
T ss_pred cccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHHhc
Confidence 988888889999999999999999999999999999999999886543
No 5
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=4.3e-20 Score=153.00 Aligned_cols=119 Identities=32% Similarity=0.496 Sum_probs=102.0
Q ss_pred cEEEECCeEEEEEEEe----CC-CcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQ-YEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~-~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+++.+++..+.+.+|| +. ++.+... .++++|+|||+ ++.+|+.+..|...+.+.....++|++|||||+||
T Consensus 78 ~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL 157 (211)
T 2g3y_A 78 RTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 157 (211)
T ss_dssp EEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTC
T ss_pred EEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHH
Confidence 5678899999999999 33 3444433 89999999999 99999999999998876433357999999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
...+.+..++++.++..++++|++|||++|.||+++|..|++.+...+
T Consensus 158 ~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 158 VRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR 205 (211)
T ss_dssp GGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred hcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 888888888888899999999999999999999999999999886543
No 6
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.82 E-value=1.5e-19 Score=144.17 Aligned_cols=120 Identities=21% Similarity=0.444 Sum_probs=97.6
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+++|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+.... ..+.|++||+||+|+.
T Consensus 48 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~ 126 (183)
T 2fu5_C 48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVN 126 (183)
T ss_dssp EEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CC
T ss_pred EEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCC
Confidence 4567889999999999 788887765 99999999999 9999999999999998764 2679999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL 123 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~ 123 (238)
..+.+..+++..+++..+++++++||++|.|++++|..|++.+.+....
T Consensus 127 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~~ 175 (183)
T 2fu5_C 127 DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 175 (183)
T ss_dssp SCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHHH
T ss_pred ccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 8888888999999999999999999999999999999999999876543
No 7
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.82 E-value=1.9e-19 Score=143.34 Aligned_cols=119 Identities=19% Similarity=0.266 Sum_probs=105.4
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+++|| ++|+.++.. ++|++++|||+ ++.+|+.+..|+.++.+.....+.|++||+||+|+.
T Consensus 45 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 45 KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124 (181)
T ss_dssp EEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred EEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 4677889999999999 788877765 89999999999 999999999999999877655689999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
..+.+..+++..+++..+++|+++||++|.|++++|..|++.+....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 125 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp TTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred hcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999999999999987654
No 8
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.82 E-value=2.1e-19 Score=141.83 Aligned_cols=120 Identities=31% Similarity=0.479 Sum_probs=100.5
Q ss_pred cEEEECCeEEEEEEEe----CC--CcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042 3 QSLQGHSGKVRAIIWN----EQ--YEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKID 72 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~--~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~D 72 (238)
+.+.+++..+.+++|| ++ ++.+... ++|++++|||+ ++.+|+.+..|+..+.+.....+.|+++|+||+|
T Consensus 43 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~D 122 (175)
T 2nzj_A 43 RTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122 (175)
T ss_dssp EEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTT
T ss_pred EEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChh
Confidence 5678889999999999 44 4444433 89999999999 9999999999999998764346899999999999
Q ss_pred CCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 73 LARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 73 L~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
+...+++..++++.++...+++++++||++|.|++++|..|++.+...+.
T Consensus 123 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 172 (175)
T 2nzj_A 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRR 172 (175)
T ss_dssp CTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred hccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Confidence 99888888888999999999999999999999999999999999876543
No 9
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.81 E-value=5.4e-19 Score=143.41 Aligned_cols=119 Identities=32% Similarity=0.497 Sum_probs=102.0
Q ss_pred cEEEECCeEEEEEEEe----CC-CcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQ-YEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~-~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+++.+++..+.+.+|| +. ++.+... .+|++++|||+ ++.||+.+..|...+.+.....+.|++||+||+||
T Consensus 47 ~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl 126 (192)
T 2cjw_A 47 RTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 126 (192)
T ss_dssp EEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTC
T ss_pred EEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhh
Confidence 5678899999999999 33 4555554 79999999999 99999999999998877643467999999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
...+.+..+++..++..++++|++|||++|.||+++|..+++.+....
T Consensus 127 ~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 127 VRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp GGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhhc
Confidence 887888888888899999999999999999999999999999886544
No 10
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.81 E-value=3e-19 Score=143.89 Aligned_cols=117 Identities=15% Similarity=0.245 Sum_probs=102.9
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccCCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC--C
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSSDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA--R 75 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~--~ 75 (238)
+++.+++..+.++||| ++|+ ...++|++++|||+ ++.+|+.+..|+.++..+....+.|++|||||+||. .
T Consensus 58 ~~~~~~~~~~~l~i~Dt~G~~~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 135 (184)
T 3ihw_A 58 KEIVVDGQSYLLLIRDEGGPPELQ--FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAAN 135 (184)
T ss_dssp EEEEETTEEEEEEEEECSSSCCHH--HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTB
T ss_pred EEEEECCEEEEEEEEECCCChhhh--eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 5788999999999999 6665 12289999999999 999999999999999886544689999999999994 5
Q ss_pred cccccHHHHHHHHHhCC-CeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 76 ARAVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 76 ~~~v~~~~~~~~~~~~~-~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
.+.+..+++..+++..+ ++|++|||++|.|++++|..|++.+.+.+
T Consensus 136 ~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 136 PRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp CCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred ccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 67888999999999997 89999999999999999999999887654
No 11
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.80 E-value=4.5e-19 Score=141.42 Aligned_cols=117 Identities=23% Similarity=0.350 Sum_probs=106.3
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+++|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+.+.....+.|+++|+||+|+.
T Consensus 57 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 136 (183)
T 3kkq_A 57 KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136 (183)
T ss_dssp EEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS
T ss_pred EEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch
Confidence 4567889999999999 778877765 89999999999 999999999999999876555789999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccC-CCCCHHHHHHHHHHHHHh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVG-IHHNVDELLVGILNQIRL 119 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~-t~~gv~elf~~i~~~l~~ 119 (238)
..+.+..+++..+++.++++|+++||+ ++.|++++|..|++.+.+
T Consensus 137 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 137 HLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp TTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred hccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 888999999999999999999999999 999999999999988764
No 12
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.80 E-value=4e-19 Score=145.00 Aligned_cols=118 Identities=23% Similarity=0.407 Sum_probs=106.1
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.++||| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+.++.++. ..+.|++||+||+|+.
T Consensus 69 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 69 KTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLS 147 (201)
T ss_dssp EEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCG
T ss_pred EEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccc
Confidence 4677888899999999 778777655 99999999999 8999999999999998765 3679999999999999
Q ss_pred CcccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 75 RARAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
..+.+..++++++++..++ +++++||++|.|++++|..|++.+.+..
T Consensus 148 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 148 ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp GGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred cccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 8888889999999999999 9999999999999999999999987654
No 13
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.80 E-value=1e-18 Score=138.41 Aligned_cols=120 Identities=22% Similarity=0.339 Sum_probs=106.9
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.+|| ++|+.++.. ++|++++|||+ ++.+|+.+..|+.++.+.....+.|+++|+||+|+.
T Consensus 48 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (181)
T 2fn4_A 48 KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127 (181)
T ss_dssp EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 4567888899999999 778877765 89999999999 999999999999998665545789999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
..+.+..+++..++...+++++++||++|.|++++|..|++.+.+...
T Consensus 128 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 128 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred cccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 888888889999999999999999999999999999999999876553
No 14
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.80 E-value=1e-18 Score=140.73 Aligned_cols=120 Identities=23% Similarity=0.417 Sum_probs=107.2
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.+|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+..+.. .+.|++||+||+|+.
T Consensus 56 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl~ 134 (196)
T 3tkl_A 56 RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLT 134 (196)
T ss_dssp EEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCT
T ss_pred EEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECcccc
Confidence 4567888999999999 778777765 99999999999 99999999999999987752 689999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL 123 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~ 123 (238)
..+.+..++++.+++..+++++++||++|.|++++|..|++.+.+....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp TTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC--
T ss_pred cccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 8888999999999999999999999999999999999999999876543
No 15
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.80 E-value=1e-18 Score=138.42 Aligned_cols=119 Identities=23% Similarity=0.370 Sum_probs=107.6
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.+|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+.... .+.|+++|+||+|+.
T Consensus 49 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 49 RTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDP 126 (181)
T ss_dssp EEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCG
T ss_pred EEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCc
Confidence 4567889999999999 778777765 89999999999 9999999999999998765 689999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL 123 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~ 123 (238)
..+.+..+++..++...+++++++||++|.|++++|..|.+.+.+.+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 175 (181)
T 3tw8_B 127 ERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKD 175 (181)
T ss_dssp GGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhhh
Confidence 8888888999999999999999999999999999999999999876644
No 16
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.80 E-value=3.5e-19 Score=146.95 Aligned_cols=118 Identities=12% Similarity=0.207 Sum_probs=102.4
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHH-HHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHR-VEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~-~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+.++||| ++|+.++.. ++|++|+|||+ ++.+|+. +..|+..+.... .+.|++|||||+||
T Consensus 66 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl 143 (214)
T 3q3j_B 66 ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDL 143 (214)
T ss_dssp EEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGG
T ss_pred EEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhh
Confidence 4567788899999999 788888876 99999999999 9999999 699999998875 68999999999999
Q ss_pred CCc------------ccccHHHHHHHHHhCCC-eEEEEccCCCCC-HHHHHHHHHHHHHhhhc
Q psy14042 74 ARA------------RAVSSQDAKNLAASFKV-KFIEVSVGIHHN-VDELLVGILNQIRLKRS 122 (238)
Q Consensus 74 ~~~------------~~v~~~~~~~~~~~~~~-~~~evSA~t~~g-v~elf~~i~~~l~~~~~ 122 (238)
... +.+..+++..+++..++ +|++|||++|.| |+++|..|++.+.....
T Consensus 144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 144 RTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp GGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred ccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 763 67889999999999999 999999999998 99999999998876543
No 17
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.80 E-value=1.1e-18 Score=140.66 Aligned_cols=118 Identities=19% Similarity=0.360 Sum_probs=106.3
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.++||| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+.+.. ..+.|++||+||+|+.
T Consensus 61 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 61 RMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLE 139 (191)
T ss_dssp EEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCG
T ss_pred EEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccC
Confidence 4577888999999999 788887765 99999999999 9999999999999998764 3689999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
..+.+..++++.+++..+++++++||+++.|++++|..|++.+.+..
T Consensus 140 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999999987654
No 18
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=6.3e-19 Score=144.36 Aligned_cols=118 Identities=23% Similarity=0.410 Sum_probs=105.8
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+++|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+.++.... ..+.|++||+||+|+.
T Consensus 66 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 66 KTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLA 144 (201)
T ss_dssp EEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGG
T ss_pred EEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCc
Confidence 4677889999999999 778776655 99999999999 9999999999999998765 3678999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
..+++..++++.+++..+++|+++||++|.|++++|..|++.+.+..
T Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 145 ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 191 (201)
T ss_dssp GGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999999987654
No 19
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.79 E-value=4.1e-19 Score=143.18 Aligned_cols=117 Identities=19% Similarity=0.251 Sum_probs=101.6
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC--CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC--CCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS--DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY--LRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~--~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~--~~~~piilVgNK~DL 73 (238)
+.+.+++..+.++||| ++|+.+... ++|++|+|||+ ++.+|+.+..|+.++.++.. ..+.|++||+||+|+
T Consensus 60 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 139 (187)
T 3c5c_A 60 SEETVDHQPVHLRVMDTADLDTPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM 139 (187)
T ss_dssp EEEEETTEEEEEEEEECCC---CCCTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGG
T ss_pred EEEEECCEEEEEEEEECCCCCcchhHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcch
Confidence 4567889999999999 778776333 89999999999 99999999999999987631 258999999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEcc-CCCCCHHHHHHHHHHHHHh
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSV-GIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA-~t~~gv~elf~~i~~~l~~ 119 (238)
...+.+..+++.++++..+++|+++|| ++|.|++++|..|++.+.+
T Consensus 140 ~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 140 AQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp GGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred hhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHhh
Confidence 888889999999999999999999999 8999999999999988753
No 20
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.79 E-value=2.1e-18 Score=139.87 Aligned_cols=118 Identities=19% Similarity=0.278 Sum_probs=104.0
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+.+++|| ++|+.++.. ++|++|+|||+ ++.+|+.+. .|+..+..+. .+.|++||+||+|+
T Consensus 59 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl 136 (201)
T 2q3h_A 59 AVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDL 136 (201)
T ss_dssp EEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGG
T ss_pred EEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhh
Confidence 4567889999999999 888888766 99999999999 999999997 7999998865 58999999999999
Q ss_pred CC------------cccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 74 AR------------ARAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 74 ~~------------~~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
.. .+.+..+++..+++..++ +|++|||++|.|++++|..|++.+.+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 137 REDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred hhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 75 356778889999998887 99999999999999999999999876653
No 21
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.79 E-value=1.3e-18 Score=136.66 Aligned_cols=116 Identities=28% Similarity=0.384 Sum_probs=98.2
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.+|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+.... ..+.|+++|+||+|+.
T Consensus 46 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 46 KKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLE 124 (170)
T ss_dssp EEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGG
T ss_pred EEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccc
Confidence 4567788899999999 777777765 99999999999 9999999999999987754 2579999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
..+.+..++++.+++..+++++++||++|.|++++|..|++.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred cccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence 888888889999999999999999999999999999999988753
No 22
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.79 E-value=5.2e-19 Score=143.88 Aligned_cols=120 Identities=22% Similarity=0.321 Sum_probs=100.1
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
.+.+++..+.+.||| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+.......+.|++||+||+|+..
T Consensus 64 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 64 IVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143 (201)
T ss_dssp EEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG
T ss_pred EEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc
Confidence 445567789999999 788887766 99999999999 9999999999999998765456899999999999998
Q ss_pred cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042 76 ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL 123 (238)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~ 123 (238)
.+.+..+++..+++..+++|+++||++|.|++++|..|++.+.+....
T Consensus 144 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 144 EREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENS 191 (201)
T ss_dssp GCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC---
T ss_pred ccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 889999999999999999999999999999999999999998776543
No 23
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.79 E-value=1.5e-18 Score=138.09 Aligned_cols=119 Identities=24% Similarity=0.375 Sum_probs=107.0
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.+|| ++|+.++.. ++|++++|||+ ++.+|+.+..|+.++.......+.|+++|+||+|+.
T Consensus 57 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 57 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred EEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 4567788899999999 777777665 89999999999 999999999999999887755689999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
..+.+..+++..+++..+++++++||+++.|++++|..|++.+.+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 183 (187)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhh
Confidence 88888888999999999999999999999999999999999987654
No 24
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.79 E-value=1.1e-18 Score=136.25 Aligned_cols=117 Identities=24% Similarity=0.365 Sum_probs=103.5
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.+|| ++|+.++.. ++|++++|||+ ++.+|+.+..|+.++.......+.|+++|+||+|+.
T Consensus 43 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 43 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 3567788899999999 777777665 89999999999 999999999999999887755689999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
..+++..+++..+++..+++++++||++|.|++++|..|++.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 888888889999999999999999999999999999999988753
No 25
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.79 E-value=1.1e-18 Score=136.47 Aligned_cols=115 Identities=22% Similarity=0.379 Sum_probs=102.7
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+++|| ++|+.++.. ++|++++|||+ ++.+|+.+..|+..+.+.....+.|+++|+||+|+.
T Consensus 42 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 42 KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence 3456778899999999 778877765 89999999999 999999999999999877545789999999999999
Q ss_pred CcccccHHHHHHHHHhC-CCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASF-KVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~-~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
..+.+..+++..+++.. +++++++||++|.|++++|..|++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp GGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 88888888999999987 79999999999999999999999876
No 26
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=2.4e-18 Score=136.48 Aligned_cols=116 Identities=24% Similarity=0.459 Sum_probs=97.8
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
.+.+++..+.+++|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+..... .+.|+++|+||+|+..
T Consensus 52 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 52 VLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAH 130 (180)
T ss_dssp EEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTS
T ss_pred EEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCc
Confidence 457788899999999 778877765 99999999999 99999999999999987653 6899999999999998
Q ss_pred cccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 76 ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
.+.+..+++..+++..+++++++||+++.|++++|..|.+.+.+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 888888899999999999999999999999999999999988654
No 27
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.78 E-value=3.6e-18 Score=137.31 Aligned_cols=117 Identities=23% Similarity=0.461 Sum_probs=104.9
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+..++..+.+.+|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+..+. ..+.|++||+||+|+.
T Consensus 62 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 62 KTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLE 140 (189)
T ss_dssp EEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCG
T ss_pred EEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccc
Confidence 4566788899999999 788887765 99999999999 9999999999999998764 3689999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
..+.+..++++++++..+++++++||++|.|++++|..|++.+.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 141 DERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEK 186 (189)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 8888888899999999999999999999999999999999988754
No 28
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.78 E-value=4.5e-18 Score=138.57 Aligned_cols=120 Identities=28% Similarity=0.390 Sum_probs=107.6
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.+|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+..+. ..+.|++||+||+|+.
T Consensus 48 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~ 126 (206)
T 2bcg_Y 48 KTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLK 126 (206)
T ss_dssp EEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCT
T ss_pred EEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCc
Confidence 4577889999999999 788887765 99999999999 9999999999999998765 3679999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL 123 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~ 123 (238)
..+.+..+++..+++..+++++++||++|.|++++|..|++.+.+....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~ 175 (206)
T 2bcg_Y 127 DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQ 175 (206)
T ss_dssp TTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCCH
T ss_pred cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 8888888899999999999999999999999999999999999876543
No 29
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.78 E-value=1.9e-18 Score=139.52 Aligned_cols=117 Identities=16% Similarity=0.321 Sum_probs=104.1
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+.+++|| ++|+.++.. ++|++|+|||+ ++.+|+.+ ..|+..+.... .+.|++||+||+|+
T Consensus 62 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl 139 (194)
T 3reg_A 62 HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI--DTAKTVLVGLKVDL 139 (194)
T ss_dssp EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSEEEEEEECGGG
T ss_pred EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhh
Confidence 4567889999999999 788887765 99999999999 99999997 78999988765 68999999999999
Q ss_pred CCc--ccccHHHHHHHHHhCCCe-EEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 74 ARA--RAVSSQDAKNLAASFKVK-FIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 74 ~~~--~~v~~~~~~~~~~~~~~~-~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
... +.+..+++..+++..+++ |+++||++|.|++++|..|++.+...+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 140 RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp CCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred ccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence 753 778889999999999988 999999999999999999999887654
No 30
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=140.11 Aligned_cols=120 Identities=23% Similarity=0.368 Sum_probs=107.5
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.+|| ++|+.++.. ++|++++|||+ ++.+|+.+..|+..+.......+.|++||+||+|+.
T Consensus 53 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 53 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred EEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 4567788899999999 777777655 89999999999 999999999999999887655689999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
..+++..+++..+++..+++++++||++|.|++++|..|++.+.+.+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 180 (206)
T 2bov_A 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKM 180 (206)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHccc
Confidence 888888889999999999999999999999999999999999987643
No 31
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.78 E-value=2e-18 Score=137.78 Aligned_cols=120 Identities=23% Similarity=0.308 Sum_probs=106.1
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+++|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+..... .+.|++||+||+|+.
T Consensus 50 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 50 KIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLD 128 (186)
T ss_dssp EEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGG
T ss_pred EEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccc
Confidence 4567788889999999 777776655 89999999999 99999999999999887643 689999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL 123 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~ 123 (238)
..+.+..+++..+++..+++++++||++|.|++++|..+++.+.+....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 177 (186)
T 2bme_A 129 ADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 177 (186)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHS
T ss_pred cccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 8788888899999999999999999999999999999999998876543
No 32
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=2.5e-18 Score=138.64 Aligned_cols=114 Identities=17% Similarity=0.277 Sum_probs=101.2
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+.++||| ++|+.++.. ++|++|+|||+ ++.+|+.+. .|+..+.++. .+.|++||+||+|+
T Consensus 57 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl 134 (194)
T 2atx_A 57 VSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDL 134 (194)
T ss_dssp EEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTS
T ss_pred EEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhh
Confidence 4567788899999999 788887765 89999999999 999999997 8999998865 58999999999999
Q ss_pred CCc------------ccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 74 ARA------------RAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 74 ~~~------------~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
... +.+..+++..+++..++ +|+++||++|.|++++|..|++.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp TTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 754 46788899999999887 8999999999999999999998775
No 33
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=6.9e-19 Score=141.92 Aligned_cols=118 Identities=22% Similarity=0.415 Sum_probs=106.0
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.++||| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+..+. ..+.|++||+||+|+.
T Consensus 63 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 63 KTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQVILVGNKCDME 141 (191)
T ss_dssp EEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCG
T ss_pred EEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCc
Confidence 4566777889999999 788877765 99999999999 9999999999999998765 3689999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
..+.+..++++.+++..+++++++||++|.|++++|..|++.+.+..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 142 EERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred cccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999887654
No 34
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.78 E-value=1.9e-18 Score=136.89 Aligned_cols=118 Identities=18% Similarity=0.189 Sum_probs=102.0
Q ss_pred cEEEECC-eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC-CCCC-EEEEEEec
Q psy14042 3 QSLQGHS-GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL-RTRP-AIIVANKI 71 (238)
Q Consensus 3 k~i~~~~-~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~-~~~p-iilVgNK~ 71 (238)
+.+.+++ ..+.+++|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+..+... ...| ++||+||+
T Consensus 46 ~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~ 125 (178)
T 2hxs_A 46 RRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKI 125 (178)
T ss_dssp EEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECG
T ss_pred EEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcc
Confidence 4566766 689999999 788877765 99999999999 999999999999998775321 2455 89999999
Q ss_pred cCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 72 DLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 72 DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
|+...+.+..+++..+++..+++++++||++|.|++++|..|++.+.+.
T Consensus 126 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 126 DLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp GGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred ccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 9988888888899999999999999999999999999999999888654
No 35
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.7e-18 Score=142.09 Aligned_cols=120 Identities=29% Similarity=0.430 Sum_probs=103.2
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.++||| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+.... ..+.|++||+||+|+.
T Consensus 53 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 53 RTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLA 131 (223)
T ss_dssp EEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGG
T ss_pred EEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccc
Confidence 4577888899999999 888888766 99999999999 9999999999999998764 3678999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL 123 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~ 123 (238)
..+.+..+++..+++..+++|+++||+++.|++++|..|++.+.+....
T Consensus 132 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 180 (223)
T 3cpj_B 132 HLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSK 180 (223)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC--
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 8888888899999999999999999999999999999999998765543
No 36
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.78 E-value=3.9e-18 Score=136.09 Aligned_cols=121 Identities=21% Similarity=0.383 Sum_probs=104.7
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+++|| ++|+.++.. ++|++++|||+ ++.+|+.+..|+..+.......+.|+++|+||+|+.
T Consensus 43 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 43 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp EEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred EEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence 4567889999999999 778887766 89999999999 999999999999999887656789999999999997
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhccc
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLV 124 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~~ 124 (238)
.+.+..+++..+++..+++++++||++|.|++++|..|++.+...+...
T Consensus 123 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~ 171 (189)
T 4dsu_A 123 -SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKM 171 (189)
T ss_dssp -SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred -ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhhhhc
Confidence 4556778899999999999999999999999999999999998776543
No 37
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.78 E-value=1.4e-18 Score=142.19 Aligned_cols=118 Identities=19% Similarity=0.331 Sum_probs=101.0
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+.++||| ++|+.++.. ++|++|+|||+ ++.+|+.+. .|+..+..+. .+.|++||+||+||
T Consensus 48 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl 125 (212)
T 2j0v_A 48 ANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDL 125 (212)
T ss_dssp EEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHH
T ss_pred EEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHh
Confidence 4567788899999999 888888765 99999999999 999999996 8999998875 58999999999999
Q ss_pred CCccc--------ccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 74 ARARA--------VSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 74 ~~~~~--------v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
...+. +..+++..+++..++ +|+++||++|.|++++|..|++.+.+...
T Consensus 126 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 126 RDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp HTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC--
T ss_pred hhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhhh
Confidence 76654 377888999999886 99999999999999999999999876543
No 38
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.78 E-value=1.7e-18 Score=135.54 Aligned_cols=114 Identities=27% Similarity=0.402 Sum_probs=101.5
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+++|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+.+.. ..+.|+++|+||+|+.
T Consensus 46 ~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 46 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLA 124 (170)
T ss_dssp EEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGG
T ss_pred EEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCc
Confidence 4567788899999999 777777655 89999999999 9999999999999998764 2689999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
..+.+..+++..+++..+++++++||++|.|++++|..|++.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 8788888899999999999999999999999999999998654
No 39
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.78 E-value=2.8e-18 Score=139.72 Aligned_cols=120 Identities=22% Similarity=0.306 Sum_probs=106.3
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.++||| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+..... .+.|++||+||+|+.
T Consensus 65 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 65 RVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLD 143 (200)
T ss_dssp EEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGG
T ss_pred EEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcc
Confidence 4567788899999999 677777665 89999999999 99999999999999887642 689999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL 123 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~ 123 (238)
..+.+..+++..+++..+++++++||++|.|++++|..|++.+......
T Consensus 144 ~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~ 192 (200)
T 2o52_A 144 PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDS 192 (200)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 8888888899999999999999999999999999999999998876543
No 40
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.78 E-value=1.6e-18 Score=135.10 Aligned_cols=117 Identities=26% Similarity=0.417 Sum_probs=104.6
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+++|| ++|+.++.. ++|++++|||+ ++.+|+.+..|..++.+.....+.|+++|+||+|+.
T Consensus 42 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 42 KEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred EEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence 4677889999999999 677777665 89999999999 999999999999999877645689999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
..+++..+++..+++..+++++++||++|.|++++|..|++.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 122 SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp GGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 888888889999999999999999999999999999999987753
No 41
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.77 E-value=3e-18 Score=136.02 Aligned_cols=116 Identities=28% Similarity=0.414 Sum_probs=103.0
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+++|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+.... ..+.|+++|+||+|+.
T Consensus 52 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 52 QTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLL 130 (181)
T ss_dssp EEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCT
T ss_pred EEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCccc
Confidence 4567788899999999 777777665 89999999999 9999999999999998764 2589999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
..+.+..++++.+++..+++++++||++|.|++++|..|++.+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 131 DARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp TTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred ccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 888888899999999999999999999999999999999976644
No 42
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.77 E-value=2.9e-18 Score=135.56 Aligned_cols=115 Identities=22% Similarity=0.397 Sum_probs=102.9
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.+|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+..... .+.|+++|+||+|+.
T Consensus 55 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 55 RIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADLE 133 (179)
T ss_dssp EEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCG
T ss_pred EEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccc
Confidence 4567788899999999 777776655 99999999999 99999999999999987652 678999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
..+.+..++++++++..+++++++||++|.|++++|..|++.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 134 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 88888888999999999999999999999999999999998764
No 43
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.77 E-value=5.4e-18 Score=139.54 Aligned_cols=117 Identities=21% Similarity=0.356 Sum_probs=96.0
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+.++||| ++|+.++.. ++|++|+|||+ ++.+|+.+. .|+..+.... .+.|++||+||+|+
T Consensus 73 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl 150 (214)
T 2j1l_A 73 VNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDL 150 (214)
T ss_dssp EEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGG
T ss_pred EEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhh
Confidence 4567889999999999 788887765 99999999999 999999996 7999998765 68999999999999
Q ss_pred CCcc------------cccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 74 ARAR------------AVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 74 ~~~~------------~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
...+ .+..+++..+++..++ +|+++||++|.|++++|..|++.+.+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 151 RKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp GSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred hccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 7653 6777889999999997 9999999999999999999999987654
No 44
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.77 E-value=3.4e-18 Score=133.79 Aligned_cols=115 Identities=23% Similarity=0.395 Sum_probs=103.6
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.+|| ++|+.++.. ++|++++|||+ ++.+|+.+..|+..+.... .+.|+++|+||+|+.
T Consensus 45 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 45 RQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLL 122 (168)
T ss_dssp EEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGG
T ss_pred EEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccC
Confidence 4567788899999999 677777765 99999999999 9999999999999998776 789999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
..+.+..++++.+++..+++++++||+++.|++++|..|.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 123 DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp GGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred cccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 888888889999999999999999999999999999999988753
No 45
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.77 E-value=7.2e-18 Score=135.83 Aligned_cols=118 Identities=29% Similarity=0.409 Sum_probs=105.0
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.+|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+.... ..+.|++||+||+||.
T Consensus 65 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 65 RTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLS 143 (193)
T ss_dssp EEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGG
T ss_pred EEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcc
Confidence 4567788899999999 788877765 99999999999 9999999999999987654 3689999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
..+.+..++++.+++..+++++++||++|.|++++|..|++.+.+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 144 QAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 87888888999999999999999999999999999999999887653
No 46
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=5.7e-18 Score=135.98 Aligned_cols=118 Identities=21% Similarity=0.355 Sum_probs=103.6
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.||| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+.++..+....+.|++||+||+|+.
T Consensus 55 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 55 KTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp EEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred EEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 4567788899999999 777777765 99999999999 999999999999999776544689999999999995
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
.+.+..+++..+++..+++++++||+++.|++++|..|++.+.+.+
T Consensus 135 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 135 -NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp -SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred -ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence 4567778889999999999999999999999999999999987654
No 47
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=4e-18 Score=137.97 Aligned_cols=118 Identities=23% Similarity=0.296 Sum_probs=103.4
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+++|| ++ +.++.. ++|++|+|||+ ++.+|+.+..|+..+.......+.|++||+||+|+.
T Consensus 67 ~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 145 (196)
T 2atv_A 67 HQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145 (196)
T ss_dssp EEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred EEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc
Confidence 4567889999999999 33 334333 89999999999 999999999999999887655789999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCC-CHHHHHHHHHHHHHhhh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHH-NVDELLVGILNQIRLKR 121 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~-gv~elf~~i~~~l~~~~ 121 (238)
..+.+..+++..+++..+++++++||++|. |++++|..|++.+.+.+
T Consensus 146 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 146 HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp GGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence 888888899999999999999999999999 99999999999987654
No 48
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.77 E-value=4.4e-18 Score=135.45 Aligned_cols=116 Identities=16% Similarity=0.293 Sum_probs=101.5
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+++.+++..+.+++|| ++|+.++.. ++|++|+|||+ ++.+|+.+. .|+..+.... .+.|+++|+||+|+
T Consensus 44 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl 121 (186)
T 1mh1_A 44 ANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDL 121 (186)
T ss_dssp EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHH
T ss_pred EEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccc
Confidence 4567889999999999 778877765 99999999999 999999997 7999998765 58999999999999
Q ss_pred CCc------------ccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 74 ARA------------RAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 74 ~~~------------~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
... +.+..+++..+++..++ +++++||++|.|++++|..|++.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred cccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhcc
Confidence 654 46778888999999997 999999999999999999999888543
No 49
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.77 E-value=3.7e-18 Score=138.01 Aligned_cols=116 Identities=22% Similarity=0.453 Sum_probs=102.6
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+++|| ++|+.++.. ++|++|+|||+ +..+|+.+..|+..+.... ..+.|++||+||+|+.
T Consensus 66 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 66 KTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCE 144 (192)
T ss_dssp EEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGG
T ss_pred EEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccc
Confidence 4567788899999999 777776655 89999999999 9999999999999988764 3579999999999998
Q ss_pred CcccccHHHHHHHHHhC-CCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 75 RARAVSSQDAKNLAASF-KVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~-~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
..+++..++++.+++.. +++++++||++|.|++++|..|++.+.+
T Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 145 TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp GGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 88888888999999885 8899999999999999999999988764
No 50
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.77 E-value=5.3e-18 Score=134.57 Aligned_cols=119 Identities=16% Similarity=0.154 Sum_probs=98.7
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccCCceEEEEEEEC-CcchHHHHHHHHHHHHHhcC--CCCCCEEEEEEeccCC-
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSSDETGLIIVWML-YKPSYHRVEQDVIRLHEEGY--LRTRPAIIVANKIDLA- 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~--~~~~piilVgNK~DL~- 74 (238)
+.+.+++..+.+++|| +++ ....++|++|+|||+ ++.+|+.+..|+..+..... ..+.|++|||||+|+.
T Consensus 45 ~~~~~~~~~~~l~i~Dt~G~~~~--~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (178)
T 2iwr_A 45 KEMLVDGQTHLVLIREEAGAPDA--KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA 122 (178)
T ss_dssp EEEEETTEEEEEEEEECSSSCCH--HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBT
T ss_pred EEEEECCEEEEEEEEECCCCchh--HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 5678899999999999 331 111289999999999 99999999998777765532 2578999999999994
Q ss_pred -CcccccHHHHHHHHHhC-CCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042 75 -RARAVSSQDAKNLAASF-KVKFIEVSVGIHHNVDELLVGILNQIRLKRSL 123 (238)
Q Consensus 75 -~~~~v~~~~~~~~~~~~-~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~ 123 (238)
..+.+..+++.++++.. +++|+++||++|.|++++|..|++.+...+..
T Consensus 123 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 123 SSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQ 173 (178)
T ss_dssp TBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred cccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHHhh
Confidence 56778888999998875 78999999999999999999999998776543
No 51
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.76 E-value=6.5e-18 Score=132.41 Aligned_cols=116 Identities=24% Similarity=0.457 Sum_probs=101.5
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.+|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+.+.. ..+.|+++|+||+|+
T Consensus 43 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl- 120 (170)
T 1g16_A 43 KTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDM- 120 (170)
T ss_dssp EEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTC-
T ss_pred EEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccC-
Confidence 3566778889999999 777777665 99999999999 9999999999999998765 257899999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
..+.+..+++..+++..+++++++||++|.|++++|..|.+.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 121 ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4556778888999999999999999999999999999999988754
No 52
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.76 E-value=2.9e-18 Score=137.40 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=100.2
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+.+++|| ++|+.++.. ++|++|+|||+ ++.+|+.+ ..|+..+.++. .+.|++||+||+|+
T Consensus 46 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl 123 (184)
T 1m7b_A 46 ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDL 123 (184)
T ss_dssp EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGG
T ss_pred EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchh
Confidence 4567788899999999 778877765 99999999999 99999999 78999998765 68999999999999
Q ss_pred CCc------------ccccHHHHHHHHHhCC-CeEEEEccC-CCCCHHHHHHHHHHHHHh
Q psy14042 74 ARA------------RAVSSQDAKNLAASFK-VKFIEVSVG-IHHNVDELLVGILNQIRL 119 (238)
Q Consensus 74 ~~~------------~~v~~~~~~~~~~~~~-~~~~evSA~-t~~gv~elf~~i~~~l~~ 119 (238)
... +.+..+++..+++.++ ++|++|||+ ++.|++++|..+++.+..
T Consensus 124 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 124 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred hcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 742 5678889999999887 799999999 689999999999988754
No 53
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.76 E-value=3.7e-18 Score=136.56 Aligned_cols=112 Identities=23% Similarity=0.470 Sum_probs=100.5
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ 82 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~ 82 (238)
.+.+++|| ++|+.++.. ++|++|+|||+ ++.+++.+..|+..+.......+.|+++|+||+|+...+.+..+
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 148 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEE 148 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH
Confidence 79999999 677766544 99999999999 99999999999999988764468999999999999888888888
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 83 DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 83 ~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
+++.+++..+++++++||+++.|++++|..|.+.+.+...
T Consensus 149 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 149 EARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRME 188 (195)
T ss_dssp HHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999876543
No 54
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.76 E-value=3e-18 Score=137.77 Aligned_cols=116 Identities=16% Similarity=0.361 Sum_probs=100.6
Q ss_pred cEEEECCeEEEEEEEe----CCCc-ccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYE-KLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~-~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+.+.||| ++|+ .++.. ++|++|+|||+ ++.+|+.+..|+.++.+.....+.|++||+||+|+
T Consensus 60 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 139 (189)
T 1z06_A 60 RAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139 (189)
T ss_dssp EEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTC
T ss_pred EEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 4567888899999999 6666 55544 99999999999 99999999999999988754578999999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCCC---CCHHHHHHHHHHHHH
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGIH---HNVDELLVGILNQIR 118 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~---~gv~elf~~i~~~l~ 118 (238)
...+++..++++.+++..+++++++||+++ .|++++|..|++.+.
T Consensus 140 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp GGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred cccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 888888889999999999999999999999 999999999987764
No 55
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.76 E-value=5.5e-18 Score=137.56 Aligned_cols=119 Identities=23% Similarity=0.424 Sum_probs=105.8
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+++|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+..+. ..+.|++||+||+|+.
T Consensus 48 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~ 126 (203)
T 1zbd_A 48 KTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDME 126 (203)
T ss_dssp EEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCT
T ss_pred EEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccC
Confidence 4567788899999999 777776655 89999999999 9999999999999998764 3678999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
..+.+..++++.+++..+++++++||++|.|++++|..|++.+.+...
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 174 (203)
T 1zbd_A 127 DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMS 174 (203)
T ss_dssp TSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 888888889999999999999999999999999999999999877643
No 56
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.76 E-value=6.6e-18 Score=132.37 Aligned_cols=114 Identities=27% Similarity=0.432 Sum_probs=101.9
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.+|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+.... ....|+++|+||+|+.
T Consensus 46 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 46 KTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG-PPSIVVAIAGNKCDLT 124 (170)
T ss_dssp EEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTSEEEEEEECTTCG
T ss_pred EEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECCccc
Confidence 4567788889999999 777777655 99999999999 9999999999999998764 3688999999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
..+++..+++..+++..+++++++||++|.|++++|..|.+.+
T Consensus 125 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 125 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 8888888899999999999999999999999999999998765
No 57
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=3.8e-18 Score=137.80 Aligned_cols=116 Identities=28% Similarity=0.390 Sum_probs=102.3
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+++|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+.+.. ..+.|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 63 KTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLS 141 (192)
T ss_dssp EEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGG
T ss_pred EEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccc
Confidence 3456677889999999 778777765 99999999999 9999999999999998765 3679999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
..+.+..++++++++..+++++++||+++.|++++|..|.+.+.+
T Consensus 142 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 142 DIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp GGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 878888899999999999999999999999999999999976643
No 58
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.75 E-value=4.7e-18 Score=133.06 Aligned_cols=114 Identities=25% Similarity=0.425 Sum_probs=100.5
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.+|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+.... ..+.|+++|+||+|+.
T Consensus 43 ~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~ 121 (170)
T 1ek0_A 43 QRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXL 121 (170)
T ss_dssp EEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGG
T ss_pred EEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcc
Confidence 4567788999999999 677777655 89999999999 9999999999999998765 3689999999999997
Q ss_pred Cc---ccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 75 RA---RAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 75 ~~---~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
.. +++..+++..+++..+++++++||++|.|++++|..|.+.+
T Consensus 122 ~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 122 QEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp GSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred ccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 55 67888889999999999999999999999999999998654
No 59
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.75 E-value=2.1e-17 Score=132.55 Aligned_cols=118 Identities=22% Similarity=0.366 Sum_probs=98.0
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.+|| ++|+.++.. ++|++++|||+ +..+|+.+..|+..+.......+.|+++|+||+|+.
T Consensus 60 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 139 (190)
T 3con_A 60 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP 139 (190)
T ss_dssp EEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred EEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCC
Confidence 4577888899999999 677777655 89999999999 999999999999999887644689999999999997
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
. +.+..++++++++..+++++++||+++.|++++|..|++.+.+.+
T Consensus 140 ~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 185 (190)
T 3con_A 140 T-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYR 185 (190)
T ss_dssp C-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred c-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 6 566788899999999999999999999999999999999887654
No 60
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.75 E-value=4.8e-18 Score=137.95 Aligned_cols=115 Identities=18% Similarity=0.379 Sum_probs=99.9
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.++||| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+.... ..+.|++||+||+|+.
T Consensus 68 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 68 KTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAA-HETVPIMLVGNKADIR 146 (199)
T ss_dssp EEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC----CCEEEEEECGGGH
T ss_pred EEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccc
Confidence 4677889999999999 778777655 89999999999 9999999999999988754 2579999999999996
Q ss_pred ------CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 75 ------RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 75 ------~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
..+.+..++++.+++..+++|+++||++|.|++++|..|++.+.
T Consensus 147 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 147 DTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred cccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 45677888899999999999999999999999999999998774
No 61
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.75 E-value=3e-18 Score=136.14 Aligned_cols=113 Identities=20% Similarity=0.366 Sum_probs=92.8
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
.+.+++..+.+++|| ++|+.++.. ++|++++|||+ ++.+|+.+. .|+..+..+. .+.|+++|+||+|+.
T Consensus 48 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~ 125 (182)
T 3bwd_D 48 NVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLR 125 (182)
T ss_dssp CCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHH
T ss_pred EEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhh
Confidence 345677789999999 888887765 89999999999 999999997 7999998875 589999999999997
Q ss_pred Cccc----------ccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 75 RARA----------VSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 75 ~~~~----------v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
..+. +..+++.++++..++ +|+++||++|.|++++|..|++.+.
T Consensus 126 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 126 DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred cCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6554 477888999999886 9999999999999999999998763
No 62
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.75 E-value=6.3e-18 Score=133.56 Aligned_cols=114 Identities=25% Similarity=0.398 Sum_probs=101.8
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.+|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+.... ..+.|+++|+||+|+.
T Consensus 54 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 54 KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLS 132 (179)
T ss_dssp EEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGG
T ss_pred EEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCccc
Confidence 4567788899999999 777777765 99999999999 9999999999999988765 2679999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
..+.+..+++..+++..+++++++||++|.|++++|..|.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 133 DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred ccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 8888888899999999999999999999999999999998755
No 63
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.75 E-value=2.5e-17 Score=134.05 Aligned_cols=114 Identities=19% Similarity=0.338 Sum_probs=100.3
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+.++||| ++|+.++.. ++|++|+|||+ ++.+|+.+ ..|+..+.... .+.|+++|+||+|+
T Consensus 64 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl 141 (201)
T 2gco_A 64 ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDL 141 (201)
T ss_dssp EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGG
T ss_pred EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHh
Confidence 4567889999999999 778877765 99999999999 99999999 68998888765 68999999999999
Q ss_pred CCc------------ccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 74 ARA------------RAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 74 ~~~------------~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
... +.+..+++..+++..++ +++++||++|.|++++|..|++.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 765 45778889999999988 8999999999999999999998764
No 64
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.75 E-value=2.7e-18 Score=140.95 Aligned_cols=112 Identities=25% Similarity=0.502 Sum_probs=99.4
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ 82 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~ 82 (238)
.+.++||| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+.......+.|++||+||+|+...+.+..+
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~ 162 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER 162 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH
Confidence 78999999 777776655 99999999999 99999999999988765543368999999999999888888889
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 83 DAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 83 ~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
+++.+++..+++++++||+++.|++++|..|++.+.+...
T Consensus 163 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 163 QARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp HHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999877543
No 65
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.75 E-value=5e-18 Score=137.67 Aligned_cols=119 Identities=19% Similarity=0.202 Sum_probs=93.6
Q ss_pred cEEEECCe--EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC--CCCCCEEEEEEe
Q psy14042 3 QSLQGHSG--KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY--LRTRPAIIVANK 70 (238)
Q Consensus 3 k~i~~~~~--~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~--~~~~piilVgNK 70 (238)
+.+.+++. .+.+++|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+..+.. ..+.|++||+||
T Consensus 62 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 141 (208)
T 2yc2_C 62 APVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141 (208)
T ss_dssp EEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEEC
T ss_pred EEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEEC
Confidence 45667776 89999999 667666655 89999999999 99999999999999988763 258999999999
Q ss_pred ccCCC-cccccHHHHHHHHHhCCCeEEEEccCC-CCCHHHHHHHHHHHHHhhh
Q psy14042 71 IDLAR-ARAVSSQDAKNLAASFKVKFIEVSVGI-HHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 71 ~DL~~-~~~v~~~~~~~~~~~~~~~~~evSA~t-~~gv~elf~~i~~~l~~~~ 121 (238)
+|+.. .+.+..+++..+++..+++++++||++ +.|++++|..|++.+.+..
T Consensus 142 ~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp C-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHHH
T ss_pred cccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHH
Confidence 99988 788888999999999999999999999 9999999999999887654
No 66
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.75 E-value=6e-18 Score=138.80 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=100.1
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+.++||| ++|+.++.. ++|++|+|||+ ++.+|+.+ ..|+..+.++. .+.|++||+||+|+
T Consensus 67 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl 144 (205)
T 1gwn_A 67 ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDL 144 (205)
T ss_dssp EEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGG
T ss_pred EEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhh
Confidence 3566788899999999 778887765 99999999999 99999999 78999998765 68999999999999
Q ss_pred CC------------cccccHHHHHHHHHhCC-CeEEEEccC-CCCCHHHHHHHHHHHHHh
Q psy14042 74 AR------------ARAVSSQDAKNLAASFK-VKFIEVSVG-IHHNVDELLVGILNQIRL 119 (238)
Q Consensus 74 ~~------------~~~v~~~~~~~~~~~~~-~~~~evSA~-t~~gv~elf~~i~~~l~~ 119 (238)
.. .+.+..+++..+++..+ ++|++|||+ ++.|++++|..|++.+..
T Consensus 145 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 145 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 74 25678888999999887 799999999 689999999999988754
No 67
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.75 E-value=2.2e-17 Score=128.32 Aligned_cols=116 Identities=23% Similarity=0.383 Sum_probs=102.2
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.+|| ++|+.++.. ++|++++|||+ ++.+|+.+..|+..+.......+.|+++|+||+|+.
T Consensus 42 ~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~ 121 (166)
T 2ce2_X 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA 121 (166)
T ss_dssp EEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred EEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh
Confidence 4567788899999999 677777665 89999999999 999999999999999887654689999999999997
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
. +.+..+++.++++..+++++++||++|.|++++|..|++.+.+
T Consensus 122 ~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 122 A-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp C-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHHT
T ss_pred h-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 6 5567788899999999999999999999999999999988753
No 68
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.74 E-value=2.3e-17 Score=130.46 Aligned_cols=116 Identities=18% Similarity=0.283 Sum_probs=100.6
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC---CCCCEEEEEEec
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL---RTRPAIIVANKI 71 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~---~~~piilVgNK~ 71 (238)
+.+.+++..+.+.+|| ++|+.++.. ++|++++|||+ +..+|+.+..|+.++...... .+.|+++|+||+
T Consensus 47 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 126 (177)
T 1wms_A 47 KDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126 (177)
T ss_dssp EEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECT
T ss_pred EEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECC
Confidence 4567788899999999 777776655 89999999999 999999999999998876532 678999999999
Q ss_pred cCCCcccccHHHHHHHHH-hCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 72 DLARARAVSSQDAKNLAA-SFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 72 DL~~~~~v~~~~~~~~~~-~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
|+. .+.+..+++..+++ ..+++++++||++|.|++++|..|++.+.+
T Consensus 127 Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 127 DIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp TCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 998 56677888888888 567899999999999999999999998865
No 69
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=4.6e-17 Score=133.05 Aligned_cols=115 Identities=22% Similarity=0.370 Sum_probs=100.7
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
.+.+++..+.+.||| ++|+.++.. ++|++|+|||+ ++.+|+.+ ..|+..+.... .+.|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~ 142 (207)
T 2fv8_A 65 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDLR 142 (207)
T ss_dssp EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGG
T ss_pred EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhh
Confidence 467788899999999 778877765 89999999999 89999999 78999888765 689999999999997
Q ss_pred Cc------------ccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 75 RA------------RAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 75 ~~------------~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
.. +.+..+++..+++..++ +++++||++|.|++++|..|++.+...
T Consensus 143 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 143 SDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp GCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred ccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 54 45777888899999887 899999999999999999999988654
No 70
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.73 E-value=3.9e-17 Score=129.32 Aligned_cols=118 Identities=19% Similarity=0.238 Sum_probs=93.6
Q ss_pred EEEEC-CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC---CCCCCEEEEEEec
Q psy14042 4 SLQGH-SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY---LRTRPAIIVANKI 71 (238)
Q Consensus 4 ~i~~~-~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~---~~~~piilVgNK~ 71 (238)
.+.++ +..+.+.+|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+.++..... ..+.|+++|+||+
T Consensus 49 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 128 (182)
T 1ky3_A 49 EVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128 (182)
T ss_dssp EECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECT
T ss_pred EEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECC
Confidence 34455 5678999999 778877665 99999999999 99999999999999887643 2678999999999
Q ss_pred cCC-CcccccHHHHHHHHH-hCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 72 DLA-RARAVSSQDAKNLAA-SFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 72 DL~-~~~~v~~~~~~~~~~-~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
|+. ..+.+..+++..+++ ..+++++++||++|.|++++|..|++.+.+..
T Consensus 129 Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 129 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp TSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 995 445677888888888 56789999999999999999999999887653
No 71
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=4.4e-17 Score=132.85 Aligned_cols=118 Identities=23% Similarity=0.443 Sum_probs=103.2
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.+|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+..... .+.|+++|+||+|+
T Consensus 60 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl- 137 (213)
T 3cph_A 60 KTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDM- 137 (213)
T ss_dssp EEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT-TCSEEEEEEECTTC-
T ss_pred EEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCC-
Confidence 4567788899999999 778777655 99999999999 99999999999999987652 57899999999999
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
..+.+..+++..+++..+++++++||+++.|++++|..|.+.+.+...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 185 (213)
T 3cph_A 138 ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID 185 (213)
T ss_dssp SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 456677788889999999999999999999999999999999877643
No 72
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.73 E-value=6.5e-18 Score=135.61 Aligned_cols=113 Identities=16% Similarity=0.130 Sum_probs=96.3
Q ss_pred EECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-C------cchHHHHHHHHHHHHHhcCCCCCCEEEEEEec
Q psy14042 6 QGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-Y------KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKI 71 (238)
Q Consensus 6 ~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d------~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~ 71 (238)
.+++..+.++||| ++|+.++.. ++|++|+|||+ + .++|..+..|+.++.. ...+.|++||+||+
T Consensus 68 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--~~~~~piilv~NK~ 145 (198)
T 3t1o_A 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--TLDDVPIVIQVNKR 145 (198)
T ss_dssp CSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--CTTSSCEEEEEECT
T ss_pred cccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--ccCCCCEEEEEEch
Confidence 4567789999999 788888775 99999999999 3 4677777888888732 23789999999999
Q ss_pred cCCCcccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 72 DLARARAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 72 DL~~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
||... +..++++++++..++ +++++||++|.|++++|..|++.+.+...
T Consensus 146 Dl~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 146 DLPDA--LPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp TSTTC--CCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred hcccc--cCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 99764 778889999999999 99999999999999999999999877653
No 73
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=1.2e-17 Score=131.00 Aligned_cols=115 Identities=25% Similarity=0.351 Sum_probs=99.5
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL 73 (238)
+.+..++..+.+.+|| ++|+.++.. ++|++++|||+ ++.+|+.+..|+..+.+.... .+.|+++|+||+|+
T Consensus 42 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl 121 (172)
T 2erx_A 42 QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE 121 (172)
T ss_dssp EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGG
T ss_pred EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccc
Confidence 3456788889999999 777776655 89999999999 999999999999888776432 57999999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
...+++..+++..+++..+++++++||++|.|++++|..|++.+
T Consensus 122 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp GGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred ccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 88888888888999999999999999999999999999998654
No 74
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.72 E-value=2.2e-17 Score=134.85 Aligned_cols=113 Identities=17% Similarity=0.332 Sum_probs=97.9
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+.++||| ++|+.++.. ++|++|+|||+ ++.+|+.+. .|+..+.... .+.|++||+||+|+
T Consensus 69 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl 146 (204)
T 4gzl_A 69 ANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDL 146 (204)
T ss_dssp EEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHH
T ss_pred EEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhh
Confidence 4567788899999999 788887765 99999999999 999999997 8999998865 78999999999999
Q ss_pred CCccc------------ccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 74 ARARA------------VSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 74 ~~~~~------------v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l 117 (238)
...+. +..+++..+++..++ +++++||++|.|++++|..|++.+
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred ccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 76543 777888999999886 699999999999999999998643
No 75
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.72 E-value=1.3e-18 Score=141.29 Aligned_cols=115 Identities=24% Similarity=0.443 Sum_probs=94.5
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.||| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+.... ..+.|++||+||+|+.
T Consensus 73 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 73 RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLT 151 (199)
T ss_dssp EEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC
T ss_pred EEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCC
Confidence 4677889999999999 788887766 99999999999 9999999999999997654 2589999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
..+.+..++++.+++..+++++++||++|.|++++|..|++.+.
T Consensus 152 ~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 152 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp --CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred ccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 88878777888999999999999999999999999999986653
No 76
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.72 E-value=6.8e-17 Score=131.17 Aligned_cols=119 Identities=17% Similarity=0.269 Sum_probs=101.7
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC---CCCCEEEEEEec
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL---RTRPAIIVANKI 71 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~---~~~piilVgNK~ 71 (238)
+.+.+++..+.+.+|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+.++...... .+.|+++|+||+
T Consensus 48 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (207)
T 1vg8_A 48 KEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127 (207)
T ss_dssp EEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECT
T ss_pred EEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 3556778889999999 778777665 99999999999 999999999999998776421 478999999999
Q ss_pred cCCCcccccHHHHHHHHH-hCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 72 DLARARAVSSQDAKNLAA-SFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 72 DL~~~~~v~~~~~~~~~~-~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
|+. .+.+..+++..++. ..+++++++||++|.|++++|..|++.+.+...
T Consensus 128 Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 128 DLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET 178 (207)
T ss_dssp TSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred CCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 998 55667778888887 678899999999999999999999999987654
No 77
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.72 E-value=4.8e-17 Score=132.38 Aligned_cols=110 Identities=14% Similarity=0.144 Sum_probs=89.5
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++ +.+++|| ++|+.++.. ++|++|+|||+ ++++|+.+..|+.++.+.....+.|+++|+||+|+.
T Consensus 62 ~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 62 EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 139 (198)
T ss_dssp EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTST
T ss_pred EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcc
Confidence 4566777 8899999 788888765 99999999999 999999999999998765434689999999999997
Q ss_pred CcccccHHHHHHHHHh-----------------CCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAAS-----------------FKVKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~-----------------~~~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
. .+..+++.+++.. .++++++|||++|+|++++|.+|++.
T Consensus 140 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 140 E--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp T--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred c--cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 5 4666777776652 34689999999999999999999853
No 78
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.71 E-value=1.7e-16 Score=127.54 Aligned_cols=105 Identities=23% Similarity=0.329 Sum_probs=93.6
Q ss_pred EEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHH
Q psy14042 12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQD 83 (238)
Q Consensus 12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~ 83 (238)
+.+.||| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+.++.... +.|+++|+||+| ...+.+..++
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D-~~~~~~~~~~ 168 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKID-KNKFQVDILE 168 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTT-CC-CCSCHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCC-cccccCCHHH
Confidence 8999999 777777665 99999999999 9999999999999998764 399999999999 5556778889
Q ss_pred HHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 84 AKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 84 ~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
+..+++..+++++++||++|.|++++|..|++.+.+.
T Consensus 169 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 169 VQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp HHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999888654
No 79
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.71 E-value=5.5e-17 Score=133.20 Aligned_cols=114 Identities=16% Similarity=0.271 Sum_probs=97.8
Q ss_pred CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc
Q psy14042 9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS 80 (238)
Q Consensus 9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~ 80 (238)
+..+.+.+|| ++|+.++.. ++|++|+|||+ +..+|+.+..|+..+..... .+.|++||+||+|+...+.+.
T Consensus 58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~ 136 (218)
T 4djt_A 58 GNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCANKIDIKNRQKIS 136 (218)
T ss_dssp SCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-SSSCEEEEEECTTCC----CC
T ss_pred CcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCccccccC
Confidence 4458999999 777777765 89999999999 99999999999999987652 568999999999999888888
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhcc
Q psy14042 81 SQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSL 123 (238)
Q Consensus 81 ~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~~ 123 (238)
.+++..+++..+++++++||++|.|++++|..|++.+......
T Consensus 137 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~ 179 (218)
T 4djt_A 137 KKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDL 179 (218)
T ss_dssp HHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhccccc
Confidence 9899999999999999999999999999999999998766543
No 80
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.70 E-value=8.3e-17 Score=130.02 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=90.1
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+++.+++ +.+++|| ++|+.++.. ++|++|+|||+ ++++|+.+..|+.++.+.....+.|+++|+||+|+.
T Consensus 60 ~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (190)
T 1m2o_B 60 EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP 137 (190)
T ss_dssp EEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred EEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCc
Confidence 3566676 8899999 778877755 99999999999 999999999999998765434689999999999997
Q ss_pred CcccccHHHHHHHHHh------------CCCeEEEEccCCCCCHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAAS------------FKVKFIEVSVGIHHNVDELLVGILN 115 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~------------~~~~~~evSA~t~~gv~elf~~i~~ 115 (238)
. .+..+++.+.+.. .+++|++|||++|.|++++|..|++
T Consensus 138 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 138 N--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp T--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred C--CCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence 6 4556666665442 4578999999999999999999974
No 81
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=5e-17 Score=130.98 Aligned_cols=118 Identities=21% Similarity=0.287 Sum_probs=100.4
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL 73 (238)
+.+.+++..+.+.+|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+...... .+.|+++|+||+|+
T Consensus 47 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl 126 (199)
T 2gf0_A 47 QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDE 126 (199)
T ss_dssp EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTC
T ss_pred EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccC
Confidence 3456788899999999 777776655 89999999999 899999999998888775432 57899999999999
Q ss_pred CCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 74 ARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
.. +.+..+++..++..++++++++||++|.|++++|..|++.+....
T Consensus 127 ~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 127 TQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRN 173 (199)
T ss_dssp SS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSSSC
T ss_pred Cc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhhhh
Confidence 75 566778888899999999999999999999999999998775543
No 82
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.70 E-value=5.7e-17 Score=133.63 Aligned_cols=116 Identities=13% Similarity=0.271 Sum_probs=100.1
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+.||| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+.+.. .+.|++||+||+|+.
T Consensus 55 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~ 132 (221)
T 3gj0_A 55 LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIK 132 (221)
T ss_dssp EEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSS
T ss_pred EEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccc
Confidence 3566788899999999 788887765 99999999999 9999999999999998875 689999999999997
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
...... +...+++..+++|+++||++|.|++++|..|++.+.....
T Consensus 133 ~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 133 DRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp SCSSCG--GGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCTT
T ss_pred cccccH--HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence 654322 5556777889999999999999999999999999987654
No 83
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.69 E-value=4.5e-17 Score=131.29 Aligned_cols=114 Identities=14% Similarity=0.139 Sum_probs=90.3
Q ss_pred CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC-------CCCCEEEEEEecc
Q psy14042 8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL-------RTRPAIIVANKID 72 (238)
Q Consensus 8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~-------~~~piilVgNK~D 72 (238)
++..+.++||| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+..+.+.... .+.|++||+||+|
T Consensus 59 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~D 138 (199)
T 4bas_A 59 EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMD 138 (199)
T ss_dssp EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTT
T ss_pred EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcC
Confidence 34458899999 788887766 99999999999 999999999999998764211 2899999999999
Q ss_pred CCCccc---ccHHHHH-HHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 73 LARARA---VSSQDAK-NLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 73 L~~~~~---v~~~~~~-~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
+..... +...... .+++..++++++|||++|.||+++|..|++.+.+..
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 139 AAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp STTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 976532 2222222 222557889999999999999999999999987664
No 84
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.69 E-value=2.6e-16 Score=136.72 Aligned_cols=115 Identities=17% Similarity=0.326 Sum_probs=101.3
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+.+++|| ++|+.++.. ++|++|+|||+ ++.+|+.+. .|+..+.... .+.|+++|+||+|+
T Consensus 194 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl 271 (332)
T 2wkq_A 194 ANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDL 271 (332)
T ss_dssp EEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHH
T ss_pred EEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhc
Confidence 4567889999999999 778777765 99999999999 999999997 7999988765 58999999999999
Q ss_pred CCc------------ccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 74 ARA------------RAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 74 ~~~------------~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
... +.+..+++..+++..++ +|++|||++|.|++++|..|++.+..
T Consensus 272 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred ccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 653 56788899999999997 99999999999999999999988754
No 85
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.68 E-value=9.6e-17 Score=136.19 Aligned_cols=89 Identities=20% Similarity=0.218 Sum_probs=74.9
Q ss_pred CceEEEEEEEC-Cc--chHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHh-CCCeEEEEccCCC
Q psy14042 28 DETGLIIVWML-YK--PSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAAS-FKVKFIEVSVGIH 103 (238)
Q Consensus 28 ~ad~~IlV~dv-d~--~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~-~~~~~~evSA~t~ 103 (238)
++|++|+|||+ ++ .+|+.+..|+.++.+.....+.|++||+||+||...+.+ +++..+++. .+++|+++||++|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g 239 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSN 239 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTT
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCC
Confidence 48999999999 87 999999999999877532367999999999999876655 567778876 4899999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy14042 104 HNVDELLVGILNQIR 118 (238)
Q Consensus 104 ~gv~elf~~i~~~l~ 118 (238)
.|++++|..|++.+.
T Consensus 240 ~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 240 VNVDLAFSTLVQLID 254 (255)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999998763
No 86
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.68 E-value=1.7e-17 Score=129.60 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=83.8
Q ss_pred eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS 81 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~ 81 (238)
..+.+++|| ++|+.++.. ++|++++|||+ ++++|+.+..|+.++.......+.|+++|+||+|+..... .
T Consensus 42 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~ 119 (164)
T 1r8s_A 42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--A 119 (164)
T ss_dssp SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--H
T ss_pred CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC--H
Confidence 348899999 677776654 99999999999 9999999999999987643336899999999999976421 2
Q ss_pred HHHHH-----HHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 82 QDAKN-----LAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 82 ~~~~~-----~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
++... .+...+++++++||++|.|++++|..|++.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 120 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred HHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 22211 122346789999999999999999999987643
No 87
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.68 E-value=2.3e-16 Score=126.54 Aligned_cols=115 Identities=18% Similarity=0.193 Sum_probs=89.6
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
++.++ .+.+++|| ++|+.++.. ++|++|+|||+ ++++|+.+..|+.++.......+.|+++|+||+|+..
T Consensus 60 ~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 60 TLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD 137 (189)
T ss_dssp EEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTT
T ss_pred EEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcC
Confidence 44555 37899999 788888765 99999999999 9999999999999887654446899999999999976
Q ss_pred ccc---ccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 76 ARA---VSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 76 ~~~---v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
... +........++..+++++++||+++.|++++|..|.+.+.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 138 AASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 422 111111112233467899999999999999999999988654
No 88
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.68 E-value=1.3e-16 Score=129.24 Aligned_cols=106 Identities=18% Similarity=0.213 Sum_probs=88.7
Q ss_pred CeEEEEEEEe----CCCcccc---cC---CceEEEEEEEC-Cc--chHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 9 SGKVRAIIWN----EQYEKLT---SS---DETGLIIVWML-YK--PSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 9 ~~~v~l~iWD----e~~~~l~---~~---~ad~~IlV~dv-d~--~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
+..+.++||| ++|+.+. .. ++|++|+|||+ ++ +++..+..|+.++.... .+.|++|||||+||..
T Consensus 66 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 66 SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN--PDMNFEVFIHKVDGLS 143 (196)
T ss_dssp TTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC--TTCEEEEEEECGGGSC
T ss_pred CCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC--CCCcEEEEEeccccCc
Confidence 6678999999 8887775 33 99999999999 76 67777788888876544 6899999999999864
Q ss_pred -------cccccHHHHHHHHH----hCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 76 -------ARAVSSQDAKNLAA----SFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 76 -------~~~v~~~~~~~~~~----~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
.+.+..+++..+++ ..+++|++|||++ .||+++|..|++.+
T Consensus 144 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 144 DDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 45666777888888 6789999999999 99999999999764
No 89
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.68 E-value=1.3e-16 Score=125.21 Aligned_cols=114 Identities=14% Similarity=0.189 Sum_probs=88.7
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
.+.++ .+.+++|| ++|+.++.. ++|++|+|||+ ++.+|..+..|+..+.+.....+.|+++|+||+|+..
T Consensus 45 ~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 45 TVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122 (171)
T ss_dssp EEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred EEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcC
Confidence 44555 47899999 778877755 99999999999 8999999999998887654336899999999999976
Q ss_pred ccc---ccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 76 ARA---VSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 76 ~~~---v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
... +........++..+++++++||++|.|++++|..|++.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 123 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp CCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 532 11111112233457789999999999999999999988754
No 90
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.67 E-value=1.1e-16 Score=129.60 Aligned_cols=106 Identities=15% Similarity=0.190 Sum_probs=82.1
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ 82 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~ 82 (238)
.+.+++|| ++|+.++.. ++|++|+|||+ ++++|+.+..|+.++.+.....+.|++||+||+|+..... .+
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~ 149 (192)
T 2b6h_A 72 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP--VS 149 (192)
T ss_dssp TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HH
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC--HH
Confidence 38899999 788888765 99999999999 9999999999999987654346899999999999975422 22
Q ss_pred HHHH-----HHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 83 DAKN-----LAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 83 ~~~~-----~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
+... .+...++++++|||++|.|++++|..|++.+.
T Consensus 150 ~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 150 ELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp HHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred HHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 2211 12234568999999999999999999997763
No 91
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=6.8e-16 Score=123.67 Aligned_cols=114 Identities=11% Similarity=0.201 Sum_probs=88.2
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++ +.+++|| ++|+.++.. ++|++|+|||+ ++++|+.+..|+.++.+.....+.|+++|+||+|+.
T Consensus 53 ~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (187)
T 1zj6_A 53 EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 130 (187)
T ss_dssp EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTST
T ss_pred EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCc
Confidence 3556655 8899999 788887765 99999999999 999999999999998775333689999999999997
Q ss_pred CcccccHHHHHHHH-----HhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 75 RARAVSSQDAKNLA-----ASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 75 ~~~~v~~~~~~~~~-----~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
.. ...++..... +..+++++++||++|.|++++|++|++.+...
T Consensus 131 ~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 131 EC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp TC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC-
T ss_pred CC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHH
Confidence 53 2333443332 23467899999999999999999999877443
No 92
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.65 E-value=1.2e-15 Score=122.64 Aligned_cols=112 Identities=18% Similarity=0.205 Sum_probs=89.6
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC--CCCCEEEEEEeccC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL--RTRPAIIVANKIDL 73 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~--~~~piilVgNK~DL 73 (238)
.+.+++ +.+.+|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+.++.+.... .+.|+++|+||+|+
T Consensus 61 ~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 138 (190)
T 2h57_A 61 KFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDL 138 (190)
T ss_dssp EEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTS
T ss_pred EEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCc
Confidence 445554 7899999 788887765 99999999999 999999999999998876433 57999999999999
Q ss_pred CCcccccHHHHHHHHH-----hCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 74 ARARAVSSQDAKNLAA-----SFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~-----~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
... ...+++...+. ..+++++++||++|.|++++|+.|.+.+.+
T Consensus 139 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 139 RDA--VTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred ccC--CCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 753 33445555543 246789999999999999999999987643
No 93
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.65 E-value=7.8e-17 Score=129.10 Aligned_cols=112 Identities=20% Similarity=0.211 Sum_probs=86.0
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
++.+++ +.+++|| ++|+.++.. ++|++++|||+ ++.+|+.+..|+.++.+.....+.|+++|+||+|+..
T Consensus 54 ~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (181)
T 1fzq_A 54 SVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 131 (181)
T ss_dssp EEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTT
T ss_pred EEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCccc
Confidence 455553 7899999 677776654 99999999999 9999999999998876543336899999999999976
Q ss_pred cccccHHHHHHH-----HHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 76 ARAVSSQDAKNL-----AASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 76 ~~~v~~~~~~~~-----~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
.... ++..+. +...++++++|||++|.|++++|.+|++.+.+
T Consensus 132 ~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 132 AAPA--SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred CCCH--HHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 5432 222222 12345789999999999999999999977644
No 94
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.65 E-value=5.7e-16 Score=123.13 Aligned_cols=113 Identities=16% Similarity=0.171 Sum_probs=87.9
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
.+.+++ +.+.+|| ++|+.++.. ++|++++|||+ ++.+|+.+..|+.++.+.....+.|+++|+||+|+..
T Consensus 56 ~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 56 TLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp EEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred EEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence 455554 8899999 778777765 99999999999 9999999999999987654347899999999999975
Q ss_pred cccccHHHHHHHHH-----hCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 76 ARAVSSQDAKNLAA-----SFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 76 ~~~v~~~~~~~~~~-----~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
.. ..++...... ..+++++++||++|.|++++|..|++.+.++
T Consensus 134 ~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 134 AL--SASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp CC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred CC--CHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence 32 2333333322 2346899999999999999999999988654
No 95
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.65 E-value=2.2e-16 Score=126.10 Aligned_cols=110 Identities=12% Similarity=0.175 Sum_probs=86.8
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+++.+++ +.+++|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+.++.+.....+.|+++|+||+||.
T Consensus 58 ~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 135 (181)
T 2h17_A 58 EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 135 (181)
T ss_dssp EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcc
Confidence 3566665 8899999 778877765 99999999999 899999999999998765323789999999999997
Q ss_pred CcccccHHHHHHHH-----HhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLA-----ASFKVKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 75 ~~~~v~~~~~~~~~-----~~~~~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
.. ...++..... +..+++++++||++|.|++++|..|++.
T Consensus 136 ~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 136 EC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp TC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred cC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 53 2233333332 2346789999999999999999999853
No 96
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.65 E-value=1.3e-16 Score=127.96 Aligned_cols=111 Identities=14% Similarity=0.211 Sum_probs=89.7
Q ss_pred CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-Cc-chHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc
Q psy14042 9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YK-PSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV 79 (238)
Q Consensus 9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~-~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v 79 (238)
+..+.+++|| ++|+.+++. +++++++|||+ ++ .+|+.+..|+.++.... .+.|++|||||+|+...+.+
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~ 130 (184)
T 2zej_A 53 KRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQR 130 (184)
T ss_dssp ---CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHH
T ss_pred CCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhh
Confidence 4678999999 778877765 89999999999 66 58999999999988764 57999999999999876654
Q ss_pred c---HHHHHHHHHhCCCe----EEEEccCCCC-CHHHHHHHHHHHHHhhh
Q psy14042 80 S---SQDAKNLAASFKVK----FIEVSVGIHH-NVDELLVGILNQIRLKR 121 (238)
Q Consensus 80 ~---~~~~~~~~~~~~~~----~~evSA~t~~-gv~elf~~i~~~l~~~~ 121 (238)
. .+.+..+++..+++ |+++||+++. |+++++..|.+.+...+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 131 KACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp HHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhccc
Confidence 3 34556677777886 9999999997 99999999998887654
No 97
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.45 E-value=1.2e-17 Score=135.97 Aligned_cols=113 Identities=17% Similarity=0.334 Sum_probs=96.1
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
+.+.+++..+.+++|| ++|+.++.. ++|++|+|||+ ++.+|+.+. .|+..+.... .+.|+++|+||+|+
T Consensus 69 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl 146 (204)
T 3th5_A 69 ANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDL 146 (204)
Confidence 3456778889999999 788877765 89999999999 999999997 8988887654 48999999999999
Q ss_pred CCcc------------cccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 74 ARAR------------AVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 74 ~~~~------------~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l 117 (238)
...+ .+..+++..+++..++ +++++||++|.|++++|..|++.+
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 7543 5566778888888887 899999999999999999998654
No 98
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.64 E-value=5.2e-15 Score=120.00 Aligned_cols=118 Identities=30% Similarity=0.449 Sum_probs=104.0
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++..+.+++|| ++|+.++.. +++++++|||+ +..+|+.+..|+.++.... ..+.|+++|+||+||.
T Consensus 45 ~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 45 RSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLR 123 (199)
T ss_dssp EEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCG
T ss_pred EEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccc
Confidence 4678899999999999 677776655 89999999999 8999999999998887653 2578999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
..+.+..++++.++...++.++++||+++.|++++|..|.+.+.+..
T Consensus 124 ~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~ 170 (199)
T 2f9l_A 124 HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV 170 (199)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999999987654
No 99
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.63 E-value=2e-15 Score=120.57 Aligned_cols=113 Identities=19% Similarity=0.203 Sum_probs=88.8
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
++.+++ +.+++|| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+.++.+.....+.|+++|+||+|+..
T Consensus 56 ~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 56 TLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133 (186)
T ss_dssp EEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred EEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC
Confidence 455554 7899999 667776655 99999999999 9999999999999987654336899999999999976
Q ss_pred cccccHHHHHHHH-----HhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 76 ARAVSSQDAKNLA-----ASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 76 ~~~v~~~~~~~~~-----~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
... .++..+.. +..+++++++||++|.|++++|..|.+.+.+.
T Consensus 134 ~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 134 ALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp CCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred CCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 433 22332222 23467899999999999999999999888653
No 100
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.61 E-value=1.7e-15 Score=131.69 Aligned_cols=96 Identities=17% Similarity=0.234 Sum_probs=83.4
Q ss_pred EEEEEe--CCCcccccC---CceEEEEEEEC-Ccc-hHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHH
Q psy14042 13 RAIIWN--EQYEKLTSS---DETGLIIVWML-YKP-SYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAK 85 (238)
Q Consensus 13 ~l~iWD--e~~~~l~~~---~ad~~IlV~dv-d~~-s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~ 85 (238)
+++||| |+|+++++. ++|++|+|||+ ++. +|+.+..|+.++.. .++|++||+||+||...+.+ +++.
T Consensus 64 ~~~iwD~qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~~~v--~~~~ 137 (301)
T 1u0l_A 64 SGVIENVLHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDL--RKVR 137 (301)
T ss_dssp SEEEEEECCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHH--HHHH
T ss_pred eEEEEEEccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCchhH--HHHH
Confidence 689999 999999987 99999999999 776 79999999998865 57999999999999876544 4566
Q ss_pred HHHHhCC--CeEEEEccCCCCCHHHHHHHHH
Q psy14042 86 NLAASFK--VKFIEVSVGIHHNVDELLVGIL 114 (238)
Q Consensus 86 ~~~~~~~--~~~~evSA~t~~gv~elf~~i~ 114 (238)
++++.++ ++|++|||++|.|++++|..+.
T Consensus 138 ~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 138 ELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 6777666 8999999999999999998775
No 101
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.60 E-value=1.9e-14 Score=116.29 Aligned_cols=114 Identities=30% Similarity=0.460 Sum_probs=100.2
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+++.+++..+.+++|| ++|+.++.. +++++++|||+ +..+|+++..|+.++.... ..+.|+++|+||+||.
T Consensus 69 ~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 69 RSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLR 147 (191)
T ss_dssp EEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGG
T ss_pred EEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccc
Confidence 4678899999999999 677777655 78999999999 8999999999998887653 2578999999999998
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
..+.+..++++.++...++.++++||+++.|++++|+.|.+.+
T Consensus 148 ~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 148 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 8778888889999999999999999999999999999998764
No 102
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.60 E-value=3.8e-16 Score=125.55 Aligned_cols=106 Identities=13% Similarity=0.236 Sum_probs=83.0
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ 82 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~ 82 (238)
.+.++||| ++|+.++.. ++|++|+|||+ ++++|+.+..|+.++.+.....+.|++||+||+|+.... ..+
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~ 143 (188)
T 1zd9_A 66 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEK 143 (188)
T ss_dssp TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHH
T ss_pred CEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHH
Confidence 47899999 667776655 89999999999 999999999999988765333689999999999997542 122
Q ss_pred HHHHH-----HHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 83 DAKNL-----AASFKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 83 ~~~~~-----~~~~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
+.... +...+++++++||++|.|++++|..|++.+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 144 ELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred HHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22211 1234578999999999999999999997653
No 103
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.59 E-value=2.9e-15 Score=133.05 Aligned_cols=115 Identities=12% Similarity=0.079 Sum_probs=95.6
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-C----------cchHHHHHHHHHHHHHhcCCCCCCEE
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-Y----------KPSYHRVEQDVIRLHEEGYLRTRPAI 65 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d----------~~s~~~~~~~~~~l~~~~~~~~~pii 65 (238)
++.++ .+.++||| ++|+++|.. +++++|+|||+ + ..+|.....|+..+.......+.|+|
T Consensus 187 ~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pii 264 (353)
T 1cip_A 187 HFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 264 (353)
T ss_dssp EEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred EEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEE
Confidence 34444 48899999 899999987 99999999999 7 57899999999998775433689999
Q ss_pred EEEEeccCCCcc---------------cccHHHHHHHHH-----------hCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 66 IVANKIDLARAR---------------AVSSQDAKNLAA-----------SFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 66 lVgNK~DL~~~~---------------~v~~~~~~~~~~-----------~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
|||||+||..++ .+..+++..++. ..++.+++|||+++.||+++|.++++.+..
T Consensus 265 Lv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 265 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp EEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence 999999996433 356778888776 356789999999999999999999998865
Q ss_pred h
Q psy14042 120 K 120 (238)
Q Consensus 120 ~ 120 (238)
.
T Consensus 345 ~ 345 (353)
T 1cip_A 345 N 345 (353)
T ss_dssp H
T ss_pred H
Confidence 4
No 104
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.57 E-value=4.9e-15 Score=131.64 Aligned_cols=112 Identities=10% Similarity=0.062 Sum_probs=87.4
Q ss_pred eEEEEEEEe----CCCcccccC---CceEEEEEEEC-----------CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEec
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-----------YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKI 71 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-----------d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~ 71 (238)
+.++++||| ++|++++.. +++++|+|||+ +..+|+....|+..+.......++|++|||||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 689999999 999999987 99999999998 468899999999998765433689999999999
Q ss_pred cCCCccc--c-------------------cHHHHHHHHHh----------------CCCeEEEEccCCCCCHHHHHHHHH
Q psy14042 72 DLARARA--V-------------------SSQDAKNLAAS----------------FKVKFIEVSVGIHHNVDELLVGIL 114 (238)
Q Consensus 72 DL~~~~~--v-------------------~~~~~~~~~~~----------------~~~~~~evSA~t~~gv~elf~~i~ 114 (238)
||..++. + ..+++..++.. ..+.+++|||+++.||+++|..++
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9954322 1 24566666432 234579999999999999999999
Q ss_pred HHHHhhh
Q psy14042 115 NQIRLKR 121 (238)
Q Consensus 115 ~~l~~~~ 121 (238)
+.+....
T Consensus 341 ~~I~~~~ 347 (354)
T 2xtz_A 341 ETLRRRN 347 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9886543
No 105
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.56 E-value=7.6e-16 Score=135.15 Aligned_cols=109 Identities=12% Similarity=0.084 Sum_probs=85.3
Q ss_pred eEEEEEEEe----CCCcc---cccC---CceEEEEEEEC-Cc--chHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc
Q psy14042 10 GKVRAIIWN----EQYEK---LTSS---DETGLIIVWML-YK--PSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA 76 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~---l~~~---~ad~~IlV~dv-d~--~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~ 76 (238)
..++|+||| |+|+. ++.. +++++|+|||+ ++ +++..+..|+.++.+.. +++|++|||||+||..+
T Consensus 44 ~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~--~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 44 TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN--PSINIEVLIHKVDGLSE 121 (331)
T ss_dssp SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHC--TTCEEEEECCCCCSSCS
T ss_pred cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcC--CCCcEEEEEECcccCch
Confidence 348999999 89974 2333 99999999999 77 33344444566555544 68999999999999753
Q ss_pred -------ccccHHHHHHHHHh----CCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 77 -------RAVSSQDAKNLAAS----FKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 77 -------~~v~~~~~~~~~~~----~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
+++..++++++++. .+++||+|||++ .+|+++|..+++.+..+.
T Consensus 122 ~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~~ 176 (331)
T 3r7w_B 122 DFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIPEL 176 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSSTTH
T ss_pred hhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHhhH
Confidence 56778888888886 689999999998 699999999998776543
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.56 E-value=3e-15 Score=131.71 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=83.6
Q ss_pred eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS 81 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~ 81 (238)
..+.++||| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+.++.......++|++||+||+|+..... .
T Consensus 207 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~ 284 (329)
T 3o47_A 207 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--A 284 (329)
T ss_dssp TTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--H
T ss_pred CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--H
Confidence 347899999 888888765 99999999999 9999999999888876654346899999999999976432 2
Q ss_pred HHHHHH-----HHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 82 QDAKNL-----AASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 82 ~~~~~~-----~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
++.... +...+++|+++||++|.||+++|..|++.+.+
T Consensus 285 ~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 285 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred HHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 222221 22345789999999999999999999988754
No 107
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.56 E-value=1.1e-14 Score=131.15 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=93.1
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-C----------cchHHHHHHHHHHHHHhcCCCCCCEE
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-Y----------KPSYHRVEQDVIRLHEEGYLRTRPAI 65 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d----------~~s~~~~~~~~~~l~~~~~~~~~pii 65 (238)
++.+++ ++++||| ++|+++|.. +++++|+|||+ + ..+|+.+..|+..+.......++|++
T Consensus 211 ~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pii 288 (402)
T 1azs_C 211 KFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 288 (402)
T ss_dssp EEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEE
T ss_pred EeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEE
Confidence 455655 8999999 899999987 99999999999 8 89999999999999875434789999
Q ss_pred EEEEeccCCCccc---c---------------------------cHHHHHHHH-----Hh--------CCCeEEEEccCC
Q psy14042 66 IVANKIDLARARA---V---------------------------SSQDAKNLA-----AS--------FKVKFIEVSVGI 102 (238)
Q Consensus 66 lVgNK~DL~~~~~---v---------------------------~~~~~~~~~-----~~--------~~~~~~evSA~t 102 (238)
|||||+||...+. + ..+++..++ +. .++.+++|||++
T Consensus 289 LvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d 368 (402)
T 1azs_C 289 LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVD 368 (402)
T ss_dssp EEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTC
T ss_pred EEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeec
Confidence 9999999965433 2 134555543 22 246788999999
Q ss_pred CCCHHHHHHHHHHHHHhhh
Q psy14042 103 HHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 103 ~~gv~elf~~i~~~l~~~~ 121 (238)
+.||+++|..+.+.+....
T Consensus 369 ~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 369 TENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHH
Confidence 9999999999998886553
No 108
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.52 E-value=3e-14 Score=126.94 Aligned_cols=116 Identities=9% Similarity=0.023 Sum_probs=88.4
Q ss_pred EEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-C----------cchHHHHHHHHHHHHHhcCCCCCCEE
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-Y----------KPSYHRVEQDVIRLHEEGYLRTRPAI 65 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d----------~~s~~~~~~~~~~l~~~~~~~~~pii 65 (238)
++.+++ +.++||| ++|+++|.. +++++|+|||+ + ..+|.....|+..+.......++|+|
T Consensus 195 ~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piI 272 (362)
T 1zcb_A 195 DFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 272 (362)
T ss_dssp EEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred EeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEE
Confidence 345554 8899999 889999987 99999999999 7 78999999999998765433689999
Q ss_pred EEEEeccCCCcc----------------cccHHHHHHHH--------H---hCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 66 IVANKIDLARAR----------------AVSSQDAKNLA--------A---SFKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 66 lVgNK~DL~~~~----------------~v~~~~~~~~~--------~---~~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
|++||+||..++ .+..+++..++ + ..++.+++|||+++.||+++|..+.+.+.
T Consensus 273 Lv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 273 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp EEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence 999999996433 25667777665 1 34578999999999999999999999886
Q ss_pred hhh
Q psy14042 119 LKR 121 (238)
Q Consensus 119 ~~~ 121 (238)
...
T Consensus 353 ~~~ 355 (362)
T 1zcb_A 353 HDN 355 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.51 E-value=8e-15 Score=135.31 Aligned_cols=109 Identities=18% Similarity=0.203 Sum_probs=85.6
Q ss_pred eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS 81 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~ 81 (238)
..+.+.||| ++|+.++.. ++|++|+|||+ ++.+|+.+..|+.++.+.....++|+|||+||+||..... .
T Consensus 364 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~ 441 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--P 441 (497)
T ss_dssp SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCC--H
T ss_pred CCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCC--H
Confidence 347899999 888888765 99999999999 9999999999999987654446899999999999975422 2
Q ss_pred HHHHHH-----HHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 82 QDAKNL-----AASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 82 ~~~~~~-----~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
++.... +...++++++|||++|.||+++|++|.+.+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 442 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp HHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC--
T ss_pred HHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 222221 122356799999999999999999999876443
No 110
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.50 E-value=1e-13 Score=114.91 Aligned_cols=93 Identities=13% Similarity=0.096 Sum_probs=73.3
Q ss_pred CceEEEEEEEC-CcchHH--HHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHH---HHHHHHHhCC--CeEEEEc
Q psy14042 28 DETGLIIVWML-YKPSYH--RVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQ---DAKNLAASFK--VKFIEVS 99 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~--~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~---~~~~~~~~~~--~~~~evS 99 (238)
.+|++|+|||+ ++.+|+ ....|+..+.... .+.|+++|+||+|+...+.+..+ .+..+++..+ +++++||
T Consensus 108 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 185 (228)
T 2qu8_A 108 INGVILFIIDISEQCGLTIKEQINLFYSIKSVF--SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFS 185 (228)
T ss_dssp SSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC---CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECC
T ss_pred cccEEEEEEecccccCcchHHHHHHHHHHHHhh--cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 78999999999 887775 2345666665432 58999999999999877777654 4566777777 8999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 100 VGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 100 A~t~~gv~elf~~i~~~l~~~~~ 122 (238)
|++|.|++++|..|++.+...+.
T Consensus 186 A~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 186 TLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999876653
No 111
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.49 E-value=7.8e-14 Score=121.43 Aligned_cols=111 Identities=13% Similarity=0.139 Sum_probs=88.2
Q ss_pred EECCeEEEEEEEe----CCC-----cccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC-CCCCCEEEEEEec
Q psy14042 6 QGHSGKVRAIIWN----EQY-----EKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY-LRTRPAIIVANKI 71 (238)
Q Consensus 6 ~~~~~~v~l~iWD----e~~-----~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~-~~~~piilVgNK~ 71 (238)
.+++ .+.++||| ++| +.++.. ++|++|+|||+ ++.+|+++..|...+..... ..+.|++||+||+
T Consensus 47 ~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~ 125 (307)
T 3r7w_A 47 RFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKM 125 (307)
T ss_dssp EETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECG
T ss_pred EeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecc
Confidence 3434 58899999 556 555544 89999999999 99999999777554433211 2689999999999
Q ss_pred cCCC--ccc----ccHHHHHHHHHhCC---CeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 72 DLAR--ARA----VSSQDAKNLAASFK---VKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 72 DL~~--~~~----v~~~~~~~~~~~~~---~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
|+.. .+. +..+++.++++.+| ++|+++||++ .|+.++|..+++.+.
T Consensus 126 Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 126 DLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHc
Confidence 9987 554 66788899999987 7899999999 899999999987553
No 112
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.49 E-value=1.6e-14 Score=126.92 Aligned_cols=111 Identities=10% Similarity=0.056 Sum_probs=92.3
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEE----------C-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWM----------L-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKID 72 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~d----------v-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~D 72 (238)
.++++||| ++||++|.. +++++|+||| . +..+|.....|+..+.......+.|++|+|||+|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence 48999999 899999987 9999999995 4 5788888888888887654347899999999999
Q ss_pred CCCcc----------------cccHHHHHHHH----------HhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 73 LARAR----------------AVSSQDAKNLA----------ASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 73 L~~~~----------------~v~~~~~~~~~----------~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
|..++ .+..+++.++. +..++.+++|||+++.||+++|..+.+.+....
T Consensus 246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 96544 46677777773 345678899999999999999999999987643
No 113
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.49 E-value=7.2e-14 Score=109.93 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=79.7
Q ss_pred EEEECCeEEEEEEEe----CCCccc------ccC-----CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEE
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKL------TSS-----DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIV 67 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l------~~~-----~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilV 67 (238)
.+.+++ +.+++|| ++|+.. ... +++++++|+|. +. +....|+.++.+ .+.|+++|
T Consensus 44 ~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~---~~~~~~~~~~~~----~~~p~ilv 114 (165)
T 2wji_A 44 EFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---ERNLYLTLQLME----MGANLLLA 114 (165)
T ss_dssp EEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH---HHHHHHHHHHHH----TTCCEEEE
T ss_pred EEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch---hHhHHHHHHHHh----cCCCEEEE
Confidence 344555 6799999 556422 111 78999999999 64 344568877765 47999999
Q ss_pred EEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 68 ANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 68 gNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
+||+|+...+.+.. +++.+++.++++++++||++|.|++++|..|++.+
T Consensus 115 ~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 115 LNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp EECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred EEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 99999976555543 46778888899999999999999999999998764
No 114
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.45 E-value=4.4e-13 Score=116.54 Aligned_cols=102 Identities=19% Similarity=0.145 Sum_probs=84.7
Q ss_pred CeEEEEEEEe----------CCCcccccC---CceEEEEEEEC-Ccc-hHHHHHHHHHHHHHhcCCCCCCEEEEEEeccC
Q psy14042 9 SGKVRAIIWN----------EQYEKLTSS---DETGLIIVWML-YKP-SYHRVEQDVIRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 9 ~~~v~l~iWD----------e~~~~l~~~---~ad~~IlV~dv-d~~-s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL 73 (238)
|..|.+++|| ++|+.+.+. ++|++++|||+ ++. +++.+..|+..+.. .++|++||+||+||
T Consensus 47 GD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL 122 (302)
T 2yv5_A 47 GDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDL 122 (302)
T ss_dssp TCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGG
T ss_pred ceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccC
Confidence 4457777776 788888877 99999999999 775 89999999998765 67999999999999
Q ss_pred CCccccc-HHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHH
Q psy14042 74 ARARAVS-SQDAKNLAASFKVKFIEVSVGIHHNVDELLVGIL 114 (238)
Q Consensus 74 ~~~~~v~-~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~ 114 (238)
..++++. .++...+++..+++++++||++|.|++++|..+.
T Consensus 123 ~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 123 LNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 8665433 4456667777899999999999999999998764
No 115
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.44 E-value=2.6e-14 Score=116.73 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=74.3
Q ss_pred EEECCe-EEEEEEEe----CCCcc-cccC---CceEEEEEEEC-Cc-chHHHHHH-HHHHHHHhc-CCCCCCEEEEEEec
Q psy14042 5 LQGHSG-KVRAIIWN----EQYEK-LTSS---DETGLIIVWML-YK-PSYHRVEQ-DVIRLHEEG-YLRTRPAIIVANKI 71 (238)
Q Consensus 5 i~~~~~-~v~l~iWD----e~~~~-l~~~---~ad~~IlV~dv-d~-~s~~~~~~-~~~~l~~~~-~~~~~piilVgNK~ 71 (238)
+.+++. .+.++||| ++|+. ++.. ++|++|+|||+ +. .++..+.. |...+.... ...+.|++||+||+
T Consensus 46 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 125 (214)
T 2fh5_B 46 YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQ 125 (214)
T ss_dssp EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECT
T ss_pred EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECC
Confidence 455544 68999999 66766 5543 99999999999 63 35666655 444444322 12579999999999
Q ss_pred cCCCcccccH--HHHHHHHH---------------------------------hC--CCeEEEEccCCC------CCHHH
Q psy14042 72 DLARARAVSS--QDAKNLAA---------------------------------SF--KVKFIEVSVGIH------HNVDE 108 (238)
Q Consensus 72 DL~~~~~v~~--~~~~~~~~---------------------------------~~--~~~~~evSA~t~------~gv~e 108 (238)
||...+.... +.+..... .. +++|++|||++| .||++
T Consensus 126 Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~ 205 (214)
T 2fh5_B 126 DIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQD 205 (214)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHH
T ss_pred CCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHH
Confidence 9976543211 11111111 11 678999999999 99999
Q ss_pred HHHHHHHH
Q psy14042 109 LLVGILNQ 116 (238)
Q Consensus 109 lf~~i~~~ 116 (238)
+|.+|++.
T Consensus 206 lf~~l~~~ 213 (214)
T 2fh5_B 206 LEKWLAKI 213 (214)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999864
No 116
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.44 E-value=1.5e-12 Score=102.64 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=76.2
Q ss_pred cEEEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
+.+.+++. .+.+|| ++|+.++.. ++|++|+|||+ +....+.. .++..+.. .+.|+++|+||+|+.
T Consensus 48 ~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~p~ilv~nK~Dl~ 120 (178)
T 2lkc_A 48 YQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTV-EAINHAKA----ANVPIIVAINKMDKP 120 (178)
T ss_dssp CEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHH-HHHHHHGG----GSCCEEEEEETTTSS
T ss_pred EEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHh----CCCCEEEEEECccCC
Confidence 45667774 567999 788887765 89999999999 63222221 22222222 578999999999997
Q ss_pred CcccccHHHHHHHHHh-------CC--CeEEEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy14042 75 RARAVSSQDAKNLAAS-------FK--VKFIEVSVGIHHNVDELLVGILNQIRLKRS 122 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~-------~~--~~~~evSA~t~~gv~elf~~i~~~l~~~~~ 122 (238)
... .++.....+. ++ ++++++||++|.|++++|..|++.+...+.
T Consensus 121 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 121 EAN---PDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp CSC---HHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred cCC---HHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhcc
Confidence 531 2222222222 22 589999999999999999999998876543
No 117
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.39 E-value=5.8e-13 Score=106.17 Aligned_cols=107 Identities=16% Similarity=0.185 Sum_probs=82.9
Q ss_pred EEECCeEEEEEEEe----CCCcc------cccC-----CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEE
Q psy14042 5 LQGHSGKVRAIIWN----EQYEK------LTSS-----DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVAN 69 (238)
Q Consensus 5 i~~~~~~v~l~iWD----e~~~~------l~~~-----~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgN 69 (238)
+.+++ +.+++|| ++|+. ++.. +++++++|+|. .+++....|+.++.. .+.|+++|+|
T Consensus 49 ~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~--~~~~~~~~~~~~~~~----~~~piilv~n 120 (188)
T 2wjg_A 49 FEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDA--TALERNLYLTLQLME----MGANLLLALN 120 (188)
T ss_dssp EEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEG--GGHHHHHHHHHHHHT----TTCCEEEEEE
T ss_pred EEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecc--hhHHHHHHHHHHHHh----cCCCEEEEEE
Confidence 44444 7789999 55542 2222 58999998887 236777788888765 5789999999
Q ss_pred eccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 70 KIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 70 K~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
|+|+...+.+. .+++.+++..+++++++||+++.|++++|..+++.+...
T Consensus 121 K~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 121 KMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp CHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred hhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 99997655554 356778888899999999999999999999999887543
No 118
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.38 E-value=3.6e-13 Score=125.56 Aligned_cols=109 Identities=12% Similarity=0.145 Sum_probs=89.3
Q ss_pred CeEEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042 9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS 81 (238)
Q Consensus 9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~ 81 (238)
+..+.+.+|| +.|+.+... ++|++|+|||+. +++.+..|+.++..+. .++|++||+||+|+...+.+..
T Consensus 95 ~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s--~~~~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~ 170 (535)
T 3dpu_A 95 LKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR--TDSNKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQ 170 (535)
T ss_dssp TTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGG--GGGGHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCH
T ss_pred CceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCC--CchhHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCH
Confidence 3468899999 788887765 999999999982 2356678999998876 5799999999999998888888
Q ss_pred HHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 82 QDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 82 ~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
++++.++...+++++++||++|.|++++|..|++.+....
T Consensus 171 ~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 171 KKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp HHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred HHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhccc
Confidence 8899999999999999999999999999999999886543
No 119
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.37 E-value=2.7e-13 Score=108.04 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=71.0
Q ss_pred ceEEEEEEEC-CcchHHHH-HHHHHH--------HHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCe----
Q psy14042 29 ETGLIIVWML-YKPSYHRV-EQDVIR--------LHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVK---- 94 (238)
Q Consensus 29 ad~~IlV~dv-d~~s~~~~-~~~~~~--------l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~---- 94 (238)
++++++||++ |..+|..+ ..|... +.......+.|+++|+||+|+...+ .++++.+++.++++
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~ 156 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEI 156 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhhhhcc
Confidence 8888888988 89999887 667653 2222112679999999999998655 55677888887764
Q ss_pred ---EEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 95 ---FIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 95 ---~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
++++||++|.|++++|..|++.+.+.+
T Consensus 157 ~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 157 DKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp HHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 799999999999999999999887654
No 120
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.33 E-value=7.8e-13 Score=104.94 Aligned_cols=105 Identities=10% Similarity=0.025 Sum_probs=76.2
Q ss_pred cEEEECCeEEEEEEEe----CCCcc---------ccc-C-CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEE
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEK---------LTS-S-DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAII 66 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~---------l~~-~-~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piil 66 (238)
+.+.+++. .+++|| +++.. .+. . ++|++++|||+ ++.+++. ..|+.++.+.. ..++|+++
T Consensus 45 ~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~il 120 (172)
T 2gj8_A 45 EHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPITV 120 (172)
T ss_dssp EEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEEE
T ss_pred EEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEEE
Confidence 45677774 478999 32211 111 2 89999999999 8888774 56777777654 25799999
Q ss_pred EEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 67 VANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 67 VgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
|+||+||..... .+++..+.+++++||++|.|++++|..|.+.+.
T Consensus 121 v~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 121 VRNKADITGETL-------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp EEECHHHHCCCC-------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred EEECccCCcchh-------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 999999954211 112235678999999999999999999997764
No 121
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.32 E-value=7.9e-13 Score=116.64 Aligned_cols=110 Identities=15% Similarity=0.098 Sum_probs=87.8
Q ss_pred eEEEEEEEe----CCCcccccC---CceEEEEEEECC-----------cchHHHHHHHHHHHHHhcCCCCCCEEEEEEec
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWMLY-----------KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKI 71 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd-----------~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~ 71 (238)
..++++||| ++||++|.. +++++|+|||+. ..+|.....|+..+.......++|++|+|||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 458899999 899999987 999999999993 68899999999998776544789999999999
Q ss_pred cCCCccc---------------ccHHHHHHHHH-hC--------------------------CCeEEEEccCCCCCHHHH
Q psy14042 72 DLARARA---------------VSSQDAKNLAA-SF--------------------------KVKFIEVSVGIHHNVDEL 109 (238)
Q Consensus 72 DL~~~~~---------------v~~~~~~~~~~-~~--------------------------~~~~~evSA~t~~gv~el 109 (238)
||..++. ...+++.+++. .+ ++.+++|||++..||+.+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v 318 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV 318 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence 9954221 12444433322 22 367899999999999999
Q ss_pred HHHHHHHHHh
Q psy14042 110 LVGILNQIRL 119 (238)
Q Consensus 110 f~~i~~~l~~ 119 (238)
|..+.+.+..
T Consensus 319 F~~v~~~Il~ 328 (340)
T 4fid_A 319 FMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999987
No 122
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.31 E-value=2.2e-12 Score=99.80 Aligned_cols=102 Identities=17% Similarity=0.190 Sum_probs=70.1
Q ss_pred EEEECCeEEEEEEEe----CCCc-------cccc---CCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEE
Q psy14042 4 SLQGHSGKVRAIIWN----EQYE-------KLTS---SDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVA 68 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~-------~l~~---~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVg 68 (238)
.+..++. .+.+|| +++. ..+. .++|++|+|+|. +..+... .++.++.+. .+.|+++|+
T Consensus 43 ~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~ 115 (161)
T 2dyk_A 43 VVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVA 115 (161)
T ss_dssp EEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEE
T ss_pred EEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEE
Confidence 3445553 688999 4421 1221 189999999999 6544432 333333222 468999999
Q ss_pred EeccCCCcccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 69 NKIDLARARAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 69 NK~DL~~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l 117 (238)
||+|+...+ +++.+++ ..++ +++++||++|.|++++|..|++.+
T Consensus 116 nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 116 TKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp ECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred ECcccccch----HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 999997652 2334444 5677 799999999999999999998754
No 123
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.28 E-value=6.2e-12 Score=111.16 Aligned_cols=106 Identities=21% Similarity=0.229 Sum_probs=86.2
Q ss_pred EEEEEEe--------CCCcccccC------CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCC-CCCCEEEEEEecc
Q psy14042 12 VRAIIWN--------EQYEKLTSS------DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYL-RTRPAIIVANKID 72 (238)
Q Consensus 12 v~l~iWD--------e~~~~l~~~------~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~D 72 (238)
..+.||| ++++.+... .++++|+|+|+ + +++++.+..|+.++..+... .++|++||+||+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D 285 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD 285 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence 4689999 345445433 59999999999 7 89999999999999987642 6899999999999
Q ss_pred CCCcccccHHHHHHHHHhCC--CeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 73 LARARAVSSQDAKNLAASFK--VKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 73 L~~~~~v~~~~~~~~~~~~~--~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
+...+ +..+++++.++ .+++++||+++.|++++|..|.+.+.+.+
T Consensus 286 l~~~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 286 MPEAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTP 332 (342)
T ss_dssp STTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred CCCCH----HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhCc
Confidence 97543 34566777766 78999999999999999999998886543
No 124
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.27 E-value=7.5e-12 Score=114.48 Aligned_cols=113 Identities=14% Similarity=0.117 Sum_probs=83.6
Q ss_pred cEEEECCeEEEEEEEe--------------CCCcccccC----CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCE
Q psy14042 3 QSLQGHSGKVRAIIWN--------------EQYEKLTSS----DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPA 64 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD--------------e~~~~l~~~----~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~pi 64 (238)
+.+..++. .++||| |+|+.+... ++|++|+|+|......+....|...+.. .++|+
T Consensus 236 ~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~----~~~~~ 309 (456)
T 4dcu_A 236 TSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE----AGKAV 309 (456)
T ss_dssp EEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH----TTCEE
T ss_pred EEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH----cCCCE
Confidence 45666665 789999 223333221 7899999999933333444556666654 67999
Q ss_pred EEEEEeccCCCcccccHHHHHHHHHhC-----CCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 65 IIVANKIDLARARAVSSQDAKNLAASF-----KVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 65 ilVgNK~DL~~~~~v~~~~~~~~~~~~-----~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
+||+||+|+...+.+..+++.+.++.. +++++++||++|.|++++|..+.+.+....
T Consensus 310 ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 310 VIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp EEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence 999999999887777766666665543 589999999999999999999998886654
No 125
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.25 E-value=1.5e-11 Score=107.00 Aligned_cols=106 Identities=15% Similarity=0.121 Sum_probs=85.8
Q ss_pred EEEEEEEe----CCCc----------ccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042 11 KVRAIIWN----EQYE----------KLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKID 72 (238)
Q Consensus 11 ~v~l~iWD----e~~~----------~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~D 72 (238)
.+.+.+|| .++. ..... ++|++++|+|. +..++.+...|+..+.. .+.|+++|+||+|
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~D 133 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKID 133 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGG
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECcc
Confidence 47889999 3333 11112 89999999999 88889988888888765 5789999999999
Q ss_pred CCCcccccHHHHHHHHHhCC--CeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 73 LARARAVSSQDAKNLAASFK--VKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 73 L~~~~~v~~~~~~~~~~~~~--~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
+...+....+....+.+.++ .+++++||++|.|++++|..|.+.+.+.
T Consensus 134 l~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 134 KIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp GSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred CCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 98555666677788888876 7899999999999999999999887543
No 126
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.25 E-value=1.2e-11 Score=99.10 Aligned_cols=86 Identities=20% Similarity=0.144 Sum_probs=64.2
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH--HHHHH-HHHhCCCeEEEEccCCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS--QDAKN-LAASFKVKFIEVSVGIH 103 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~~~-~~~~~~~~~~evSA~t~ 103 (238)
.+|++++|+|+ +..++.... +...+.. .+.|+++|+||+|+...+++.. +++.+ ++...+++++++||++|
T Consensus 105 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 179 (195)
T 1svi_A 105 ELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETK 179 (195)
T ss_dssp TEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTC
T ss_pred cCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCC
Confidence 44999999999 777777643 2233333 6789999999999987665543 33333 33345789999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy14042 104 HNVDELLVGILNQIR 118 (238)
Q Consensus 104 ~gv~elf~~i~~~l~ 118 (238)
.|++++|..|.+.+.
T Consensus 180 ~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 180 KGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999997763
No 127
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.25 E-value=1.1e-11 Score=105.25 Aligned_cols=100 Identities=14% Similarity=0.094 Sum_probs=78.3
Q ss_pred EEEEEEEe----CCCcccc------c-----CCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 11 KVRAIIWN----EQYEKLT------S-----SDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~------~-----~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
.+.+.+|| +.|+..+ . .++|++|+|+|. +.++. ..|..++.. .+.|+++|+||+|+.
T Consensus 51 ~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 51 GYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEA 123 (258)
T ss_dssp TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHH
T ss_pred CeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCC
Confidence 37899999 5555422 1 279999999999 65443 346666654 579999999999997
Q ss_pred CcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
..+.+.. +...+++.++++++++||++|.|++++|..+.+.+.
T Consensus 124 ~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 124 KKTGMKI-DRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp HHTTCCB-CHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CccchHH-HHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 6555543 467888889999999999999999999999998764
No 128
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.23 E-value=7.7e-12 Score=107.18 Aligned_cols=103 Identities=14% Similarity=0.070 Sum_probs=78.8
Q ss_pred EECCeEEEEEEEe----CCCcc------cccC-----CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEE
Q psy14042 6 QGHSGKVRAIIWN----EQYEK------LTSS-----DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVAN 69 (238)
Q Consensus 6 ~~~~~~v~l~iWD----e~~~~------l~~~-----~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgN 69 (238)
.++. .+.+++|| ++|.. +... ++|++|+|+|. +.++ ...|..++.. .+.|+++|+|
T Consensus 44 ~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~---~~~~~~~l~~----~~~p~ilv~N 115 (272)
T 3b1v_A 44 LVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLER---NLYLTTQLIE----TGIPVTIALN 115 (272)
T ss_dssp ECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHH---HHHHHHHHHH----TCSCEEEEEE
T ss_pred EEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHh---HHHHHHHHHh----cCCCEEEEEE
Confidence 3444 56799999 55542 2221 69999999999 6443 3456666665 5799999999
Q ss_pred eccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 70 KIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 70 K~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l 117 (238)
|+|+...+.+. .+...+++.++++++++||++|.|++++|..|++.+
T Consensus 116 K~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 116 MIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp CHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred ChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 99997655554 356778888899999999999999999999998654
No 129
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.21 E-value=2.6e-11 Score=109.74 Aligned_cols=144 Identities=13% Similarity=0.078 Sum_probs=108.5
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV 106 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv 106 (238)
.++.++.++|+.+.++..+..|..++..+... ...|.+||+||+|+... ...+++.+.++..+++++.+||++++|+
T Consensus 235 ra~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi 312 (416)
T 1udx_A 235 RTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGL 312 (416)
T ss_dssp SSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred HHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCH
Confidence 68999999999767888888888888776421 46899999999999765 2233455556667889999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCCCcCccCcceeecceEEeecccCc-eeeecccceeeeEEEEeCCCCCeEEEE
Q psy14042 107 DELLVGILNQIRLKRSLVQTGGAQAAAPWKSNTTLVRASAVIVGSVDGN-RIWGKEFKKTSMLGVQWTSDSQNLLFA 182 (238)
Q Consensus 107 ~elf~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-rv~g~~~~~~~~~~~~~~~~~~~~~~g 182 (238)
++++..|.+.+.+.+..... . .... ......+.+....+|. ++.|+.+++ ++.+++|+.++++.+|.
T Consensus 313 ~eL~~~i~~~l~~~~~~~~~-~----~~~~---~~~~~~~~i~~~~~~~~~v~g~~~~~-~~~~~~~~~~~~~~~~~ 380 (416)
T 1udx_A 313 PALKEALHALVRSTPPPEMP-K----PVPR---KEVQAGVEVVPVAEGVYEVRAPEVER-YLARIKGDLMEAAGYLQ 380 (416)
T ss_dssp HHHHHHHHHHHHTSCCCCCC-C----CCC-------CCCCEEEEEETTEEEEECHHHHH-HHTTEEECTGGGHHHHH
T ss_pred HHHHHHHHHHHHhccccccc-c----cccc---cccCCCcEEEEcCCCeEEEeChHHHH-HHHhcCCCCHHHHHHHH
Confidence 99999999999876543211 0 0111 1122356666666777 999999999 99999999999986664
No 130
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.18 E-value=4.8e-11 Score=108.54 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=81.8
Q ss_pred cEEEECCeEEEEEEEe----C----------CCccccc---C-CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCC
Q psy14042 3 QSLQGHSGKVRAIIWN----E----------QYEKLTS---S-DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRP 63 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e----------~~~~l~~---~-~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~p 63 (238)
+.+..++. .++||| . +|+.+.. . ++|++|+|+|+ +..++++. .|...+.. .++|
T Consensus 216 ~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~ 288 (436)
T 2hjg_A 216 TSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKA 288 (436)
T ss_dssp EEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCE
T ss_pred EEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCc
Confidence 35566665 488999 2 2222222 1 89999999999 87888776 47777654 6799
Q ss_pred EEEEEEeccCCCcccccHHHHH-HHHH----hCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 64 AIIVANKIDLARARAVSSQDAK-NLAA----SFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 64 iilVgNK~DL~~~~~v~~~~~~-~~~~----~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
+++|+||+|+...+.+..++.. .+.+ ..+++++++||++|.|++++|..+.+.+....
T Consensus 289 iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 289 VVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp EEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence 9999999999876655443332 2222 34689999999999999999999998876543
No 131
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.17 E-value=8.2e-11 Score=93.70 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=62.8
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc--cccHHHHHHHHHhC-CCeEEEEccCCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR--AVSSQDAKNLAASF-KVKFIEVSVGIH 103 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~--~v~~~~~~~~~~~~-~~~~~evSA~t~ 103 (238)
+++++++|+|. +..+.... .+...+.. .+.|+++|+||+|+.... ....+++..++... +++++++||++|
T Consensus 104 ~~~~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 178 (195)
T 3pqc_A 104 SLQMVFLLVDGRIPPQDSDL-MMVEWMKS----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTG 178 (195)
T ss_dssp TEEEEEEEEETTSCCCHHHH-HHHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTC
T ss_pred CceEEEEEecCCCCCCHHHH-HHHHHHHH----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCC
Confidence 56999999998 54333322 22222322 369999999999997543 34455667777764 479999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy14042 104 HNVDELLVGILNQIR 118 (238)
Q Consensus 104 ~gv~elf~~i~~~l~ 118 (238)
.|++++|+.|.+.+.
T Consensus 179 ~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 179 EGISELLDLISTLLK 193 (195)
T ss_dssp TTHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998774
No 132
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.15 E-value=1.7e-10 Score=102.14 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=75.3
Q ss_pred CceEEEEEEEC-Ccc--hHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCC
Q psy14042 28 DETGLIIVWML-YKP--SYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHH 104 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~--s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~ 104 (238)
.+|++++|+|+ +.. +++....|+.++.... .+.|+++|+||+|+.....+ +++..+++..+++++++||++|+
T Consensus 246 ~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~ 321 (357)
T 2e87_A 246 LGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGT 321 (357)
T ss_dssp TCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTTTB
T ss_pred cCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCCCc
Confidence 69999999998 666 7888889999988764 38999999999999865543 44566677788999999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q psy14042 105 NVDELLVGILNQIRLK 120 (238)
Q Consensus 105 gv~elf~~i~~~l~~~ 120 (238)
|++++|..|.+.+...
T Consensus 322 gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 322 GIDLVKEEIIKTLRPL 337 (357)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988654
No 133
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.13 E-value=4.1e-11 Score=108.73 Aligned_cols=108 Identities=18% Similarity=0.116 Sum_probs=83.1
Q ss_pred EEEECCeEEEEEEEe----CCCccccc--------C--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEE
Q psy14042 4 SLQGHSGKVRAIIWN----EQYEKLTS--------S--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVAN 69 (238)
Q Consensus 4 ~i~~~~~~v~l~iWD----e~~~~l~~--------~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgN 69 (238)
.++.++. ..+.+|| +.|..+.. . ++|++|+|+|. ........|+..+.+ .+.|+++|+|
T Consensus 76 ~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~----~~~piIvV~N 148 (423)
T 3qq5_A 76 SMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKE----MEIPFVVVVN 148 (423)
T ss_dssp EEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHH----TTCCEEEECC
T ss_pred EEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHh----cCCCEEEEEe
Confidence 4445443 2789999 66665522 1 89999999998 222344678888776 4799999999
Q ss_pred eccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 70 KIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 70 K~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
|+|+...+.. +..+.+++.++++++++||++|.|++++|..|.+.+.+.
T Consensus 149 K~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 149 KIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred CcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 9999876554 556667777899999999999999999999999988554
No 134
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.09 E-value=6.8e-11 Score=100.28 Aligned_cols=102 Identities=16% Similarity=0.128 Sum_probs=73.6
Q ss_pred EEECCeEEEEEEEe----CCCccc----------cc-----CCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCE
Q psy14042 5 LQGHSGKVRAIIWN----EQYEKL----------TS-----SDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPA 64 (238)
Q Consensus 5 i~~~~~~v~l~iWD----e~~~~l----------~~-----~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~pi 64 (238)
+..++. .+.+|| ..+... .. .++|++|+|+|. +.+++..+ ...+.. .+.|+
T Consensus 43 ~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l---~~~l~~----~~~pv 113 (256)
T 3iby_A 43 FLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYL---TSQLFE----LGKPV 113 (256)
T ss_dssp EEETTE--EEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHH---HHHHTT----SCSCE
T ss_pred EEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHH---HHHHHH----cCCCE
Confidence 445553 789999 444431 11 279999999999 75554433 333332 47999
Q ss_pred EEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHH
Q psy14042 65 IIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQ 116 (238)
Q Consensus 65 ilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~ 116 (238)
++|+||+|+...+.+.. ....+++.++++++++||++|.|++++|..|.+.
T Consensus 114 ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 114 VVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp EEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred EEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 99999999975544332 2455777889999999999999999999999865
No 135
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.07 E-value=5.9e-10 Score=102.54 Aligned_cols=108 Identities=11% Similarity=0.041 Sum_probs=74.7
Q ss_pred cEEEECCeEEEEEEEe----CCCccc----------ccC-CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEE
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEKL----------TSS-DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAII 66 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~l----------~~~-~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piil 66 (238)
+.+.+++ +.+.+|| ++++.+ ... ++|++|+|+|. +..+++.+..+..-+... .+.|+++
T Consensus 274 ~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---~~~piIv 348 (476)
T 3gee_A 274 ECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH---PAAKFLT 348 (476)
T ss_dssp EEEEETT--EEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC---TTSEEEE
T ss_pred EEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc---CCCCEEE
Confidence 3456666 5789999 334322 122 89999999999 887776433333323222 3799999
Q ss_pred EEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 67 VANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 67 VgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
|+||+|+........ +.+.+....+++++||++|.|++++|..|.+.+.
T Consensus 349 V~NK~Dl~~~~~~~~---~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 349 VANKLDRAANADALI---RAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp EEECTTSCTTTHHHH---HHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred EEECcCCCCccchhH---HHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 999999986654422 3344432378999999999999999999998886
No 136
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.05 E-value=4.6e-11 Score=97.55 Aligned_cols=95 Identities=16% Similarity=0.103 Sum_probs=68.8
Q ss_pred EEEEEEEe----CCCcccccC---C----ceEEEEEEEC--CcchHHHHHHHHHHHHHhc---CCCCCCEEEEEEeccCC
Q psy14042 11 KVRAIIWN----EQYEKLTSS---D----ETGLIIVWML--YKPSYHRVEQDVIRLHEEG---YLRTRPAIIVANKIDLA 74 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~----ad~~IlV~dv--d~~s~~~~~~~~~~l~~~~---~~~~~piilVgNK~DL~ 74 (238)
.+.+.+|| ++|+.++.. + ++++|+|||+ ++++|..+..|+.++.... ...+.|+++|+||+|+.
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 133 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 133 (218)
T ss_dssp GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhc
Confidence 35789999 677665544 4 8999999999 5689999999998887653 23689999999999998
Q ss_pred Cccccc------HHHHHHHHHhCCCeEEEEccCCCCC
Q psy14042 75 RARAVS------SQDAKNLAASFKVKFIEVSVGIHHN 105 (238)
Q Consensus 75 ~~~~v~------~~~~~~~~~~~~~~~~evSA~t~~g 105 (238)
..+.+. .+++..++...+++|+++||++|.+
T Consensus 134 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 134 TARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 766554 4566777777788999999999875
No 137
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.05 E-value=4.5e-10 Score=95.59 Aligned_cols=107 Identities=16% Similarity=0.132 Sum_probs=77.8
Q ss_pred EEECCeEEEEEEEe----CCCcc------ccc-----CCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEE
Q psy14042 5 LQGHSGKVRAIIWN----EQYEK------LTS-----SDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVA 68 (238)
Q Consensus 5 i~~~~~~v~l~iWD----e~~~~------l~~-----~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVg 68 (238)
+..++ ..+.+|| +.|.. +.. .++|++++|+|. +. +....|..++... ...|+++|+
T Consensus 45 ~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~ 116 (271)
T 3k53_A 45 MEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVL 116 (271)
T ss_dssp EEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEE
T ss_pred EEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEE
Confidence 34445 3589999 44444 121 279999999998 53 3334455555542 339999999
Q ss_pred EeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 69 NKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 69 NK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
||+|+...+.+... ...+++.++++++++||++|.|++++|..+.+.+...
T Consensus 117 NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 117 NKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp ECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred EChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhcc
Confidence 99999755544432 6778888899999999999999999999999887544
No 138
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.04 E-value=8e-10 Score=90.32 Aligned_cols=88 Identities=14% Similarity=0.057 Sum_probs=62.3
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH--HHHHH-HHHh------CCCeEEE
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS--QDAKN-LAAS------FKVKFIE 97 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~~~-~~~~------~~~~~~e 97 (238)
.+|++|+|+|. +..+ .....|+..+.. .+.|+++|+||+|+...+.+.. ++..+ +... .+.++++
T Consensus 115 ~~d~vi~v~d~~~~~~-~~~~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 189 (223)
T 4dhe_A 115 QLCGMILMMDARRPLT-ELDRRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQL 189 (223)
T ss_dssp TEEEEEEEEETTSCCC-HHHHHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CcCEEEEEEeCCCCCC-HHHHHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEE
Confidence 58999999999 5433 223445555544 5789999999999976544322 22222 2332 5678999
Q ss_pred EccCCCCCHHHHHHHHHHHHHhh
Q psy14042 98 VSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 98 vSA~t~~gv~elf~~i~~~l~~~ 120 (238)
+||++|.|++++|..|.+.+...
T Consensus 190 ~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 190 FSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp EBTTTTBSHHHHHHHHHHHHC--
T ss_pred eecCCCcCHHHHHHHHHHhcCcc
Confidence 99999999999999999887543
No 139
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.02 E-value=2.8e-10 Score=97.33 Aligned_cols=83 Identities=19% Similarity=0.158 Sum_probs=64.3
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV 106 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv 106 (238)
++|++|+|+|. +.+++ ..|...+.. .+.|+++|+||+|+...+.+.. ....+++.++++++++||++|.|+
T Consensus 85 ~~d~ii~VvD~~~~~~~---~~~~~~l~~----~~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~~g~gi 156 (274)
T 3i8s_A 85 DADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVSTRGRGI 156 (274)
T ss_dssp CCSEEEEEEEGGGHHHH---HHHHHHHHH----HTCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCGGGHHH
T ss_pred CCCEEEEEecCCChHHH---HHHHHHHHh----cCCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcCCCCCH
Confidence 89999999999 64443 445555554 3699999999999975444322 346677888999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy14042 107 DELLVGILNQIR 118 (238)
Q Consensus 107 ~elf~~i~~~l~ 118 (238)
+++|..|.+.+.
T Consensus 157 ~el~~~i~~~~~ 168 (274)
T 3i8s_A 157 EALKLAIDRYKA 168 (274)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHHHh
Confidence 999999986543
No 140
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.01 E-value=3.9e-09 Score=97.25 Aligned_cols=105 Identities=12% Similarity=0.160 Sum_probs=75.9
Q ss_pred cEEEECCeEEEEEEEe----C-CCccc---------cc-C-CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEE
Q psy14042 3 QSLQGHSGKVRAIIWN----E-QYEKL---------TS-S-DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAI 65 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e-~~~~l---------~~-~-~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~pii 65 (238)
+.+.+++ +.+.+|| + ++... .. . ++|++|+|+|. +..++++..- ++.+ .+.|++
T Consensus 284 ~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~i-l~~l------~~~pii 354 (482)
T 1xzp_A 284 EEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKI-LERI------KNKRYL 354 (482)
T ss_dssp EEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHH-HHHH------TTSSEE
T ss_pred EEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHH-HHHh------cCCCEE
Confidence 4567776 4689999 4 44321 11 1 89999999999 7778876432 2222 468999
Q ss_pred EEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 66 IVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 66 lVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
+|+||+||... +..+++..++. .+++++++||++|.|++++|..|.+.+..
T Consensus 355 vV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 355 VVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp EEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred EEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 99999999753 33444444432 45789999999999999999999987663
No 141
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.00 E-value=1.2e-09 Score=103.17 Aligned_cols=105 Identities=14% Similarity=0.130 Sum_probs=81.6
Q ss_pred CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc
Q psy14042 8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV 79 (238)
Q Consensus 8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v 79 (238)
++..+.++||| ++|...... .+|++|+|+|. +..+++....|...+. .+.|+++|+||+|+...+
T Consensus 67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~-- 139 (599)
T 3cb4_D 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAAD-- 139 (599)
T ss_dssp TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC--
T ss_pred CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCccccc--
Confidence 56678999999 666554433 89999999999 7777777777765542 468999999999997643
Q ss_pred cHHHHHHHHHhCCCe---EEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 80 SSQDAKNLAASFKVK---FIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 80 ~~~~~~~~~~~~~~~---~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
..+...++.+.+++. ++++||++|.|++++|+.|++.++.
T Consensus 140 ~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 140 PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 233455666667764 9999999999999999999987643
No 142
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.99 E-value=9.9e-10 Score=98.85 Aligned_cols=105 Identities=23% Similarity=0.199 Sum_probs=79.1
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc--
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS-- 80 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~-- 80 (238)
...+.+|| ++|...... ++|++|+|+|. +..++.....|+..+... ...|+++|+||+|+.......
T Consensus 74 ~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~ 150 (403)
T 3sjy_A 74 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQ 150 (403)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHH
T ss_pred cceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHH
Confidence 37899999 667655443 99999999999 666688888888776653 336899999999997654322
Q ss_pred HHHHHHHHHhC---CCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 81 SQDAKNLAASF---KVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 81 ~~~~~~~~~~~---~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
.++..++.+.. +++++++||++|.|++++|+.|.+.+.
T Consensus 151 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 151 YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 23344444333 578999999999999999999987664
No 143
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.97 E-value=1.5e-09 Score=102.31 Aligned_cols=105 Identities=18% Similarity=0.156 Sum_probs=81.4
Q ss_pred CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc
Q psy14042 8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV 79 (238)
Q Consensus 8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v 79 (238)
++..+.++||| ++|...... .+|++|+|+|. +..+++....|...+. .+.|+++|+||+|+...+
T Consensus 69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~-- 141 (600)
T 2ywe_A 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD-- 141 (600)
T ss_dssp TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC--
T ss_pred CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC--
Confidence 45678999999 666544433 89999999999 7777887777765432 578999999999997643
Q ss_pred cHHHHHHHHHhCCC---eEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 80 SSQDAKNLAASFKV---KFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 80 ~~~~~~~~~~~~~~---~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
..+...++++.+++ +++++||++|.|++++|+.|++.++.
T Consensus 142 ~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 142 VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 23345566666776 49999999999999999999987643
No 144
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.91 E-value=9.3e-10 Score=95.45 Aligned_cols=100 Identities=18% Similarity=0.158 Sum_probs=68.8
Q ss_pred EEEEEEEe----CCC--------cccccC---CceEEEEEEEC-CcchHHHHHHHH-HHHHHhcCCCCCCEEEEEEeccC
Q psy14042 11 KVRAIIWN----EQY--------EKLTSS---DETGLIIVWML-YKPSYHRVEQDV-IRLHEEGYLRTRPAIIVANKIDL 73 (238)
Q Consensus 11 ~v~l~iWD----e~~--------~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~-~~l~~~~~~~~~piilVgNK~DL 73 (238)
.+++.+|| .++ ...... ++|++++|+|. +..+.. ..|+ ..+.+.. .+.|+++|+||+|+
T Consensus 54 ~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~--~~~p~ilV~NK~Dl 129 (301)
T 1wf3_A 54 RRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV--GKVPILLVGNKLDA 129 (301)
T ss_dssp TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT--TTSCEEEEEECGGG
T ss_pred CcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc--CCCCEEEEEECccc
Confidence 47899999 332 222211 89999999999 654444 3444 4454432 47999999999999
Q ss_pred CCcccccHHHHHHHHHh-CC-CeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 74 ARARAVSSQDAKNLAAS-FK-VKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 74 ~~~~~v~~~~~~~~~~~-~~-~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
...+.. ....++. .+ .+++++||++|.|++++|..|.+.+.
T Consensus 130 ~~~~~~----~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 130 AKYPEE----AMKAYHELLPEAEPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp CSSHHH----HHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred CCchHH----HHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 754330 1222222 23 57999999999999999999987654
No 145
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.89 E-value=1.1e-08 Score=92.88 Aligned_cols=88 Identities=16% Similarity=0.074 Sum_probs=64.3
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHH-HHHH----hCCCeEEEEccC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAK-NLAA----SFKVKFIEVSVG 101 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~-~~~~----~~~~~~~evSA~ 101 (238)
.+|++++|+|. +..++++. .+...+.. .++|+++|+||+|+...+....++.. .+.+ ..+.+++++||+
T Consensus 263 ~ad~vllv~d~~~~~~~~~~-~i~~~l~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 337 (439)
T 1mky_A 263 KADVVVIVLDATQGITRQDQ-RMAGLMER----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSAD 337 (439)
T ss_dssp HCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTT
T ss_pred hCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECC
Confidence 68999999999 66666642 23333333 57999999999999865554433332 2222 335789999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q psy14042 102 IHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 102 t~~gv~elf~~i~~~l~~~ 120 (238)
+|.|++++|..+.+.+...
T Consensus 338 ~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 338 KGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999877654
No 146
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.88 E-value=1.4e-09 Score=96.90 Aligned_cols=94 Identities=13% Similarity=0.090 Sum_probs=71.2
Q ss_pred EeCCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc---ccHHHHHHHHH
Q psy14042 17 WNEQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA---VSSQDAKNLAA 89 (238)
Q Consensus 17 WDe~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~---v~~~~~~~~~~ 89 (238)
-+|+|+++... .++++++|+|+ |.. ..|..++.++. .+.|+++|+||+||..... ...+....+++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH
Confidence 33788887766 78899999999 642 56777777765 5899999999999965432 11223344567
Q ss_pred hCCC---eEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 90 SFKV---KFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 90 ~~~~---~~~evSA~t~~gv~elf~~i~~~l 117 (238)
..|+ +++++||++|+|+++++..+.+..
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 7787 799999999999999999987654
No 147
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.88 E-value=4.1e-09 Score=93.99 Aligned_cols=104 Identities=13% Similarity=-0.003 Sum_probs=78.8
Q ss_pred EEEEEEEe----CCCccccc-C--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCE-EEEEE-eccCCCcccccH
Q psy14042 11 KVRAIIWN----EQYEKLTS-S--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPA-IIVAN-KIDLARARAVSS 81 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~-~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~pi-ilVgN-K~DL~~~~~v~~ 81 (238)
..++.||| ++|..... . .+|++|+|+| +...+...+.++..+.. .+.|. +++.| |+|+ ..+.+..
T Consensus 59 ~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~ 132 (370)
T 2elf_A 59 GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDE 132 (370)
T ss_dssp SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHH
T ss_pred CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHH
Confidence 35699999 66643332 2 9999999999 87777777777777655 45787 89999 9999 5433322
Q ss_pred --HHHHHHHHhCC---CeEEE--EccCC---CCCHHHHHHHHHHHHHhh
Q psy14042 82 --QDAKNLAASFK---VKFIE--VSVGI---HHNVDELLVGILNQIRLK 120 (238)
Q Consensus 82 --~~~~~~~~~~~---~~~~e--vSA~t---~~gv~elf~~i~~~l~~~ 120 (238)
++++++++..+ +++++ +||++ +.|+++++..|.+.+...
T Consensus 133 ~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 133 LKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcccc
Confidence 45666665543 68999 99999 999999999999887654
No 148
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.88 E-value=4.9e-09 Score=94.43 Aligned_cols=101 Identities=24% Similarity=0.196 Sum_probs=66.4
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEEC-Cc----chHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YK----PSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA 78 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~----~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~ 78 (238)
...+.+|| ++|...... .+|++|+|+|. +. ++++.+. .+... ...|+++|+||+|+.....
T Consensus 80 ~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l---~~~~iivv~NK~Dl~~~~~ 152 (408)
T 1s0u_A 80 LRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL---GIDKIIIVQNKIDLVDEKQ 152 (408)
T ss_dssp EEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT---TCCCEEEEEECTTSSCTTT
T ss_pred ccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc---CCCeEEEEEEccCCCCHHH
Confidence 37899999 666544333 78999999999 43 2333332 22221 3358999999999976543
Q ss_pred --ccHHHHHHHHHh---CCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 79 --VSSQDAKNLAAS---FKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 79 --v~~~~~~~~~~~---~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
...+++.++++. .+++++++||++|.|++++++.|.+.+.
T Consensus 153 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 153 AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 234566677665 3678999999999999999999987654
No 149
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.87 E-value=4.6e-09 Score=96.77 Aligned_cols=99 Identities=20% Similarity=0.139 Sum_probs=72.7
Q ss_pred EEEEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc--
Q psy14042 12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA-- 78 (238)
Q Consensus 12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~-- 78 (238)
..+.+|| ++|...... .+|++|+|+|. + +++++.+ ..+.. .++|+++|+||+|+.....
T Consensus 73 ~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~----~~ip~IvviNK~Dl~~~~~~~ 144 (482)
T 1wb1_A 73 YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM----LILDH----FNIPIIVVITKSDNAGTEEIK 144 (482)
T ss_dssp EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH----HHHHH----TTCCBCEEEECTTSSCHHHHH
T ss_pred EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH----HHHHH----cCCCEEEEEECCCcccchhHH
Confidence 6799999 566443322 89999999999 5 3444433 23333 4688899999999976422
Q ss_pred ccHHHHHHHHHhC----CCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 79 VSSQDAKNLAASF----KVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 79 v~~~~~~~~~~~~----~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
...+++..+++.. +++++++||++|.|++++++.|.+.+.
T Consensus 145 ~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 145 RTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp HHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 2234556666655 578999999999999999999999876
No 150
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.87 E-value=4.9e-09 Score=95.30 Aligned_cols=107 Identities=18% Similarity=0.174 Sum_probs=72.3
Q ss_pred cEEEECCeEEEEEEEe----CCC---------cccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEE
Q psy14042 3 QSLQGHSGKVRAIIWN----EQY---------EKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAI 65 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~---------~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~pii 65 (238)
+.+++++. .+++|| +.+ +..+.. ++|++|+|+|. +..++.+ .++.++.+. .+.|++
T Consensus 42 ~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~i 114 (439)
T 1mky_A 42 DTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK---STVDTI 114 (439)
T ss_dssp EEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEE
T ss_pred EEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEE
Confidence 34566664 568999 332 112222 99999999999 6555443 233333222 468999
Q ss_pred EEEEeccCCCcccccHHHH-HHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 66 IVANKIDLARARAVSSQDA-KNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 66 lVgNK~DL~~~~~v~~~~~-~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
||+||+|+... . ..+. .++. ..++ +++++||++|.|++++|+.+++.+.+.
T Consensus 115 lv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 115 LVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp EEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence 99999998532 1 1222 3333 4566 689999999999999999999988754
No 151
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.85 E-value=8.1e-09 Score=94.62 Aligned_cols=105 Identities=13% Similarity=0.183 Sum_probs=71.8
Q ss_pred cEEEECCeEEEEEEEe----CCCcc----------cccC-CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEE
Q psy14042 3 QSLQGHSGKVRAIIWN----EQYEK----------LTSS-DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAII 66 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD----e~~~~----------l~~~-~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piil 66 (238)
+.+.+++ +.+.+|| ..+.. .... ++|++|+|+|. +..++.. ..|+..+ .+.|+++
T Consensus 265 ~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piiv 335 (462)
T 3geh_A 265 SQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLIL 335 (462)
T ss_dssp HEEEETT--EEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEE
T ss_pred EEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEE
Confidence 4567777 4568999 22221 1112 89999999999 7666554 4454444 3379999
Q ss_pred EEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q psy14042 67 VANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120 (238)
Q Consensus 67 VgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~ 120 (238)
|+||+|+.....+. ....+ ..+.+++++||++|.|++++|..|.+.+...
T Consensus 336 V~NK~Dl~~~~~~~--~~~~~--~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 336 VMNKIDLVEKQLIT--SLEYP--ENITQIVHTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp EEECTTSSCGGGST--TCCCC--TTCCCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred EEECCCCCcchhhH--HHHHh--ccCCcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 99999998665443 11111 1356899999999999999999999887543
No 152
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.85 E-value=1.2e-08 Score=90.73 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=79.4
Q ss_pred cEEEECCeEEEEEEEe-CC------------CcccccC--CceEEEEEEEC-Ccc--hHHHHHHHHHHHHHhcCCCCCCE
Q psy14042 3 QSLQGHSGKVRAIIWN-EQ------------YEKLTSS--DETGLIIVWML-YKP--SYHRVEQDVIRLHEEGYLRTRPA 64 (238)
Q Consensus 3 k~i~~~~~~v~l~iWD-e~------------~~~l~~~--~ad~~IlV~dv-d~~--s~~~~~~~~~~l~~~~~~~~~pi 64 (238)
+.+.+++ ..+.+|| -- |+..... .+|++++|+|+ ++. +++.+..|...+.... ..+.|+
T Consensus 219 ~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~-~~~~p~ 295 (364)
T 2qtf_A 219 YAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG-VSGKPI 295 (364)
T ss_dssp EEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT-CCSCCE
T ss_pred EEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC-cCCCCE
Confidence 4677777 4578999 22 2222222 89999999999 665 5666666666555442 367899
Q ss_pred EEEEEeccCCCccccc-HHHHHHHHHhC---CCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 65 IIVANKIDLARARAVS-SQDAKNLAASF---KVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 65 ilVgNK~DL~~~~~v~-~~~~~~~~~~~---~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
++|+||+|+....... .+.+..++... +.+++++||+++.|+++++..|.+.+....
T Consensus 296 ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 296 LVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp EEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence 9999999997543111 12233334444 347899999999999999999998776544
No 153
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.83 E-value=5.7e-10 Score=99.17 Aligned_cols=110 Identities=10% Similarity=0.099 Sum_probs=67.8
Q ss_pred EECCeEEEEEEEe-----------CCCccccc-------C---Cc-----------eEEEEEEEC-C-cchHHHHH-HHH
Q psy14042 6 QGHSGKVRAIIWN-----------EQYEKLTS-------S---DE-----------TGLIIVWML-Y-KPSYHRVE-QDV 50 (238)
Q Consensus 6 ~~~~~~v~l~iWD-----------e~~~~l~~-------~---~a-----------d~~IlV~dv-d-~~s~~~~~-~~~ 50 (238)
..++..+.+.||| ++|+.+.. . ++ ++-+++|++ + ..++..+. .|+
T Consensus 89 ~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~ 168 (361)
T 2qag_A 89 EERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFM 168 (361)
T ss_dssp ---CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHH
T ss_pred ecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHH
Confidence 3456678999999 34666654 1 22 233467777 4 56776665 344
Q ss_pred HHHHHhcCCCCCCEEEEEEeccCCCcccccH--HHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 51 IRLHEEGYLRTRPAIIVANKIDLARARAVSS--QDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 51 ~~l~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
..+ . .++|+|+|+||+|+...+++.. +++..+++..++++|++||+++.| ++.|..+.+.+....
T Consensus 169 ~~l---~--~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 169 KAI---H--NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI 235 (361)
T ss_dssp HHT---C--S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred HHh---c--cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence 433 2 6799999999999988776655 577788888899999999999999 999999998887654
No 154
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.83 E-value=2.2e-09 Score=96.56 Aligned_cols=108 Identities=18% Similarity=0.211 Sum_probs=75.0
Q ss_pred EECCeEEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCcc
Q psy14042 6 QGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARAR 77 (238)
Q Consensus 6 ~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~ 77 (238)
.++.....+.||| ++|...... .+|++|+|+|.....+.....++..+.. .++| +++|+||+|+....
T Consensus 69 ~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~ 144 (405)
T 2c78_A 69 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ----VGVPYIVVFMNKVDMVDDP 144 (405)
T ss_dssp EEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH----TTCCCEEEEEECGGGCCCH
T ss_pred EeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH----cCCCEEEEEEECccccCcH
Confidence 3444457789999 667554433 8999999999933334445666666654 4678 89999999997532
Q ss_pred cc---cHHHHHHHHHhCC-----CeEEEEccCCCCC------------------HHHHHHHHHHHH
Q psy14042 78 AV---SSQDAKNLAASFK-----VKFIEVSVGIHHN------------------VDELLVGILNQI 117 (238)
Q Consensus 78 ~v---~~~~~~~~~~~~~-----~~~~evSA~t~~g------------------v~elf~~i~~~l 117 (238)
+. ..++++.+++..+ ++++++||++|.| ++++++.|.+.+
T Consensus 145 ~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 145 ELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 21 2335666777665 6899999999987 667776666544
No 155
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.82 E-value=4.9e-08 Score=92.05 Aligned_cols=99 Identities=18% Similarity=0.179 Sum_probs=70.9
Q ss_pred EEEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc-
Q psy14042 13 RAIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS- 80 (238)
Q Consensus 13 ~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~- 80 (238)
.+.+|| +.|..++.. .+|++|+|+|. + +++++.+.. +.. .++|+++|+||+|+.......
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~----~~vPiIVViNKiDl~~~~~~~~ 142 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM----YRTPFVVAANKIDRIHGWRVHE 142 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH----TTCCEEEEEECGGGSTTCCCCT
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH----cCCeEEEEeccccccccccccc
Confidence 589999 888887765 79999999999 6 667765542 332 578999999999996421100
Q ss_pred ------------H---H-------HHHHHHHhC---------------CCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 81 ------------S---Q-------DAKNLAASF---------------KVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 81 ------------~---~-------~~~~~~~~~---------------~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
. + +......+. .++++++||++|.|+++++..|...+..
T Consensus 143 ~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 143 GRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp TCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 0 0 111111111 2379999999999999999999988764
No 156
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.78 E-value=8.2e-08 Score=87.33 Aligned_cols=97 Identities=12% Similarity=0.098 Sum_probs=63.9
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEECCcch----HH---HHHHHHHHHHHhcCCCCCC-EEEEEEeccCCC
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPS----YH---RVEQDVIRLHEEGYLRTRP-AIIVANKIDLAR 75 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s----~~---~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~ 75 (238)
...+.||| ++|...... ++|++|+|+|.+... |+ ..+..+..+.. .++| +++|+||+|+..
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPT 169 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcc
Confidence 35899999 777655443 899999999993322 22 22222222222 4566 999999999953
Q ss_pred c------ccccHHHHHHHHHhCC------CeEEEEccCCCCCHHHHHH
Q psy14042 76 A------RAVSSQDAKNLAASFK------VKFIEVSVGIHHNVDELLV 111 (238)
Q Consensus 76 ~------~~v~~~~~~~~~~~~~------~~~~evSA~t~~gv~elf~ 111 (238)
. .+...+++..+++..+ ++++++||++|.|+++++.
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 2 1112234555555554 4799999999999999765
No 157
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.77 E-value=1.1e-08 Score=92.85 Aligned_cols=98 Identities=18% Similarity=0.111 Sum_probs=68.2
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcc-c-c--
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR-A-V-- 79 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~-~-v-- 79 (238)
...+.||| ++|...... .+|++|+|+|.....+.....++..+... .-.|+++|+||+|+.... + +
T Consensus 103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~~~ 179 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVFES 179 (434)
T ss_dssp SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHHHH
T ss_pred CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHHHH
Confidence 46789999 677554433 99999999999333333444455444432 223699999999997521 1 1
Q ss_pred cHHHHHHHHHhCC-----CeEEEEccCCCCCHHHHHH
Q psy14042 80 SSQDAKNLAASFK-----VKFIEVSVGIHHNVDELLV 111 (238)
Q Consensus 80 ~~~~~~~~~~~~~-----~~~~evSA~t~~gv~elf~ 111 (238)
..++...+++..+ ++++++||++|.|++++|.
T Consensus 180 i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 180 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 2345667777777 6899999999999998543
No 158
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.77 E-value=1.2e-08 Score=91.90 Aligned_cols=101 Identities=20% Similarity=0.156 Sum_probs=70.8
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEEC-Cc----chHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YK----PSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA 78 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~----~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~ 78 (238)
...+.+|| ++|...... .+|++|+|+|. +. ++++.+. .+... ...|+++|+||+|+.....
T Consensus 82 ~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~---~~~~iivviNK~Dl~~~~~ 154 (410)
T 1kk1_A 82 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQII---GQKNIIIAQNKIELVDKEK 154 (410)
T ss_dssp EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHH---TCCCEEEEEECGGGSCHHH
T ss_pred ccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHc---CCCcEEEEEECccCCCHHH
Confidence 37899999 556443322 77999999999 43 2333333 22222 3368999999999986543
Q ss_pred --ccHHHHHHHHHh---CCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 79 --VSSQDAKNLAAS---FKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 79 --v~~~~~~~~~~~---~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
...+++..+++. .+++++++||++|.|++++++.|.+.+.
T Consensus 155 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 155 ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 223455566554 3678999999999999999999987654
No 159
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.77 E-value=4.6e-09 Score=94.29 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=72.3
Q ss_pred CeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCccc-
Q psy14042 9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARA- 78 (238)
Q Consensus 9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~- 78 (238)
.....+.||| ++|...... .+|++|+|+|. +....+.. .++..+.. .++| +++|+||+|+....+
T Consensus 63 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~----~~vp~iivviNK~Dl~~~~~~ 137 (397)
T 1d2e_A 63 TAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQ----IGVEHVVVYVNKADAVQDSEM 137 (397)
T ss_dssp CSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCCEEEEEECGGGCSCHHH
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHH----cCCCeEEEEEECcccCCCHHH
Confidence 3346789999 566543322 89999999999 54333333 33344443 4688 789999999975322
Q ss_pred --ccHHHHHHHHHhCC-----CeEEEEccCCCCC----------HHHHHHHHHHHHH
Q psy14042 79 --VSSQDAKNLAASFK-----VKFIEVSVGIHHN----------VDELLVGILNQIR 118 (238)
Q Consensus 79 --v~~~~~~~~~~~~~-----~~~~evSA~t~~g----------v~elf~~i~~~l~ 118 (238)
...++++++++..+ ++++++||++|.| ++++++.|.+.+.
T Consensus 138 ~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 138 VELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 12346667777765 5899999999764 8888888876653
No 160
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.76 E-value=8.4e-09 Score=94.91 Aligned_cols=99 Identities=9% Similarity=-0.006 Sum_probs=61.6
Q ss_pred ECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHH------HHHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042 7 GHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHR------VEQDVIRLHEEGYLRTRPAIIVANKID 72 (238)
Q Consensus 7 ~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~------~~~~~~~l~~~~~~~~~piilVgNK~D 72 (238)
++...+.+.||| ++|...... ++|++|+|+|. +..++.. .......+.. . ...|+|||+||+|
T Consensus 106 ~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~--~~~~iIvviNK~D 182 (483)
T 3p26_A 106 FSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-L--GIHNLIIAMNKMD 182 (483)
T ss_dssp EECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-T--TCCCEEEEEECGG
T ss_pred EecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-c--CCCcEEEEEECcC
Confidence 344457899999 677655443 99999999999 5443322 1222222222 1 3357999999999
Q ss_pred CCCcccccHH----HHHHHHHhC-----CCeEEEEccCCCCCHHH
Q psy14042 73 LARARAVSSQ----DAKNLAASF-----KVKFIEVSVGIHHNVDE 108 (238)
Q Consensus 73 L~~~~~v~~~----~~~~~~~~~-----~~~~~evSA~t~~gv~e 108 (238)
+...++...+ ++..+.+.. +++++++||++|.|+++
T Consensus 183 l~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 183 NVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp GGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred cccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 9764333322 333333333 46899999999999985
No 161
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.76 E-value=2.2e-08 Score=93.14 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=46.3
Q ss_pred eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
..+.+.||| ++|...+.. .+|++|+|+|. +..+.+....|. .+.. .++|+++|+||+|+..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~----~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 80 KDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL----RHTPIMTFINKMDRDT 148 (528)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT----TTCCEEEEEECTTSCC
T ss_pred CCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCEEEEEeCCCCcc
Confidence 347899999 677665543 89999999999 766666665553 3333 5789999999999964
No 162
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.76 E-value=4.4e-09 Score=93.70 Aligned_cols=96 Identities=11% Similarity=0.080 Sum_probs=69.9
Q ss_pred EEEeCCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc---ccHHHHHHH
Q psy14042 15 IIWNEQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA---VSSQDAKNL 87 (238)
Q Consensus 15 ~iWDe~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~---v~~~~~~~~ 87 (238)
.+-+|+|+++... +++++++|+|+ |..+ .|..++.++. .+.|+++|+||+||..... ...+.....
T Consensus 55 ~~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~ 127 (369)
T 3ec1_A 55 PLDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRM 127 (369)
T ss_dssp ----CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHH
Confidence 3444888887766 78899999999 7653 4666666664 5899999999999975422 122334445
Q ss_pred HHhCCC---eEEEEccCCCCCHHHHHHHHHHHH
Q psy14042 88 AASFKV---KFIEVSVGIHHNVDELLVGILNQI 117 (238)
Q Consensus 88 ~~~~~~---~~~evSA~t~~gv~elf~~i~~~l 117 (238)
++..|. +++.+||++|+|+++++..+.+..
T Consensus 128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 667776 799999999999999999987654
No 163
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.75 E-value=1.7e-09 Score=98.36 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=71.7
Q ss_pred CeEEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcC---CCC-CCEEEEEEeccCCCcc
Q psy14042 9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGY---LRT-RPAIIVANKIDLARAR 77 (238)
Q Consensus 9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~---~~~-~piilVgNK~DL~~~~ 77 (238)
...+.+.||| ++|...... .+|++|+|+|....+|+....|..+.+++.. ..+ .|+++|+||+|+....
T Consensus 81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 3446799999 777654433 9999999999944889876554433332210 124 4699999999997621
Q ss_pred ------cccHHHHHHHHHhCC-----CeEEEEccCCCCCHHHHHH
Q psy14042 78 ------AVSSQDAKNLAASFK-----VKFIEVSVGIHHNVDELLV 111 (238)
Q Consensus 78 ------~v~~~~~~~~~~~~~-----~~~~evSA~t~~gv~elf~ 111 (238)
....++++.+++..+ ++++++||++|.|+.+++.
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 223456777777765 6899999999999986654
No 164
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.73 E-value=3.6e-08 Score=85.31 Aligned_cols=86 Identities=19% Similarity=0.206 Sum_probs=64.8
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC-eEEEEccCCCCCH
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV-KFIEVSVGIHHNV 106 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv 106 (238)
.+|++++|+|... +.....|+.+... ..+.|+++|+||+|+...+....+.+..+++.+++ .++++||+++.|+
T Consensus 88 ~~D~vl~Vvd~~~--~~~~~~~i~~~l~---~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 88 DVELVIFVVEGTR--WTPDDEMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp CEEEEEEEEETTC--CCHHHHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred cCCEEEEEEeCCC--CCHHHHHHHHHHH---hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 8999999999932 4444445554333 15799999999999986333344556667777776 7999999999999
Q ss_pred HHHHHHHHHHHH
Q psy14042 107 DELLVGILNQIR 118 (238)
Q Consensus 107 ~elf~~i~~~l~ 118 (238)
+++++.+.+.+.
T Consensus 163 ~~l~~~i~~~l~ 174 (301)
T 1ega_A 163 DTIAAIVRKHLP 174 (301)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHhCC
Confidence 999999987654
No 165
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.72 E-value=2.9e-09 Score=99.14 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=70.4
Q ss_pred EEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc-cHHH
Q psy14042 13 RAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV-SSQD 83 (238)
Q Consensus 13 ~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v-~~~~ 83 (238)
.+.+|| +.|..++.. .+|++|+|+|. +....+... .+..+.. .+.|+++|+||+|+...... ...+
T Consensus 53 ~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e-~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~ 127 (537)
T 3izy_P 53 KITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVE-SIQHAKD----AHVPIVLAINKCDKAEADPEKVKKE 127 (537)
T ss_dssp CCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHH-HHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSH
T ss_pred EEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEecccccccchHHHHHH
Confidence 688999 788887765 89999999999 544444333 3333332 57899999999999743211 1112
Q ss_pred HHHH---HHhC--CCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 84 AKNL---AASF--KVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 84 ~~~~---~~~~--~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
...+ +..+ .++++++||++|.|++++|..|...+.
T Consensus 128 l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 128 LLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp HHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred HHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 2211 1222 358999999999999999999987764
No 166
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.69 E-value=1.5e-08 Score=83.39 Aligned_cols=97 Identities=7% Similarity=-0.010 Sum_probs=66.0
Q ss_pred CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHH---hcC-CCCCCEEEEEEec-cCCCcccccHHHHHHHHH
Q psy14042 19 EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHE---EGY-LRTRPAIIVANKI-DLARARAVSSQDAKNLAA 89 (238)
Q Consensus 19 e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~---~~~-~~~~piilVgNK~-DL~~~~~v~~~~~~~~~~ 89 (238)
+++|.+|.. ++|++|+|.|. |++.++ .+..+.++.. ... ..++|++|++||. |++. ..+..++.....
T Consensus 113 ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e~L~ 189 (227)
T 3l82_B 113 YSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAHELH 189 (227)
T ss_dssp ----CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHHHcC
Confidence 577888877 99999999999 886655 4444433322 221 2689999999996 7753 344444433221
Q ss_pred ----hCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 90 ----SFKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 90 ----~~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
...+.++.|||.+|+|+.+.++||++.+.
T Consensus 190 L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 190 LNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp GGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred CcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 24567899999999999999999986653
No 167
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.65 E-value=3e-10 Score=93.33 Aligned_cols=58 Identities=26% Similarity=0.298 Sum_probs=47.2
Q ss_pred CCEEEEEEeccCCCcccccHHHHHHHHHhC--CCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 62 RPAIIVANKIDLARARAVSSQDAKNLAASF--KVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 62 ~piilVgNK~DL~~~~~v~~~~~~~~~~~~--~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
.|.++|+||+|+...+.+..+++..+++.. +++++++||++|.|++++|..|.+.+..
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 566999999999765545666677766653 6799999999999999999999987754
No 168
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.64 E-value=1.5e-08 Score=101.19 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=74.6
Q ss_pred ECCeEEEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCccc
Q psy14042 7 GHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARA 78 (238)
Q Consensus 7 ~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~ 78 (238)
++.....+.||| ++|...... .+|++|+|+|.+...+.....++..+.. .++| +|+|+||+|+....+
T Consensus 354 f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e 429 (1289)
T 3avx_A 354 YDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ----VGVPYIIVFLNKCDMVDDEE 429 (1289)
T ss_dssp EECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH----HTCSCEEEEEECCTTCCCHH
T ss_pred EcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH----cCCCeEEEEEeecccccchh
Confidence 344457889999 667544332 8999999999932223334445555544 4678 799999999985332
Q ss_pred c---cHHHHHHHHHhCC-----CeEEEEccCCC--------CCHHHHHHHHHHHH
Q psy14042 79 V---SSQDAKNLAASFK-----VKFIEVSVGIH--------HNVDELLVGILNQI 117 (238)
Q Consensus 79 v---~~~~~~~~~~~~~-----~~~~evSA~t~--------~gv~elf~~i~~~l 117 (238)
. ..+++..+++..+ ++++++||++| .|++++++.|.+.+
T Consensus 430 ~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 430 LLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 2 2346677777765 68999999999 46888888887654
No 169
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.63 E-value=9.7e-09 Score=88.98 Aligned_cols=82 Identities=7% Similarity=0.039 Sum_probs=52.0
Q ss_pred EEEECC--cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc--cHHHHHHHHHhCCCeEEEEccCCCCCHHHH
Q psy14042 34 IVWMLY--KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV--SSQDAKNLAASFKVKFIEVSVGIHHNVDEL 109 (238)
Q Consensus 34 lV~dvd--~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~~~~~~~~~~evSA~t~~gv~el 109 (238)
++|+.. ..+|+.... ..+++.. .+.|+++|+||.|+...+++ ..+++.++++.++++||++||+++ |++++
T Consensus 130 ll~ldePt~~~Ld~~~~--~~l~~l~--~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~ 204 (301)
T 2qnr_A 130 CFYFISPFGHGLKPLDV--AFMKAIH--NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDED 204 (301)
T ss_dssp EEEEECSSSSSCCHHHH--HHHHHHT--TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------
T ss_pred eeeeecCcccCCCHHHH--HHHHHHH--hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHH
Confidence 444442 334665542 3333333 56899999999999876554 356788889999999999999999 99999
Q ss_pred HHHHHHHHHhh
Q psy14042 110 LVGILNQIRLK 120 (238)
Q Consensus 110 f~~i~~~l~~~ 120 (238)
|..+++.+...
T Consensus 205 f~~l~~~i~~~ 215 (301)
T 2qnr_A 205 FKEQTRLLKAS 215 (301)
T ss_dssp CHHHHHHHHTT
T ss_pred HHHHHHHhhcC
Confidence 99999888643
No 170
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.63 E-value=4.4e-09 Score=97.19 Aligned_cols=96 Identities=19% Similarity=0.262 Sum_probs=66.2
Q ss_pred EEEEEEe----CCCcccccC---CceEEEEEEEC-C---cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCc--cc
Q psy14042 12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-Y---KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA--RA 78 (238)
Q Consensus 12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d---~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~--~~ 78 (238)
..+.+|| +.|..++.. .+|++|+|+|. + +++++.+ ..+.. .+.|+++++||+|+... +.
T Consensus 51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l----~~~~~----~~vPiIVviNKiDl~~~~~~~ 122 (501)
T 1zo1_I 51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI----QHAKA----AQVPVVVAVNKIDKPEADPDR 122 (501)
T ss_dssp SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH----HHHHH----TTCCEEEEEECSSSSTTCCCC
T ss_pred EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH----HHHHh----cCceEEEEEEeccccccCHHH
Confidence 3678999 888877765 89999999999 5 3444432 23332 57899999999999642 11
Q ss_pred ccHH--HHHHHHHhCC--CeEEEEccCCCCCHHHHHHHHHH
Q psy14042 79 VSSQ--DAKNLAASFK--VKFIEVSVGIHHNVDELLVGILN 115 (238)
Q Consensus 79 v~~~--~~~~~~~~~~--~~~~evSA~t~~gv~elf~~i~~ 115 (238)
+..+ +...+++.++ ++++++||++|.|++++|+.|..
T Consensus 123 v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 123 VKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp TTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 1110 0001122333 78999999999999999999873
No 171
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.61 E-value=1.3e-08 Score=92.34 Aligned_cols=98 Identities=13% Similarity=0.141 Sum_probs=66.7
Q ss_pred EEEEEEe----C--------CCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 12 VRAIIWN----E--------QYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 12 v~l~iWD----e--------~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
..+.+|| + +++.++.. ++|++|+|+|. +..++.+ .++.++.+ ..+.|++||+||+|+..
T Consensus 51 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~---~~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 51 YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILY---RTKKPVVLAVNKLDNTE 125 (436)
T ss_dssp SCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHT---TCCSCEEEEEECCCC--
T ss_pred ceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHH---HcCCCEEEEEECccCcc
Confidence 4689999 2 33443333 89999999999 7666553 34444332 26789999999999965
Q ss_pred cccccHHHHHHHHHhCCC-eEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 76 ARAVSSQDAKNLAASFKV-KFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~-~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
.+.. ..++. ..++ +++++||++|.|++++|+.+.+.+.+
T Consensus 126 ~~~~----~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 126 MRAN----IYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp ---C----CCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred chhh----HHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcCc
Confidence 3211 11122 3455 78999999999999999999987754
No 172
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.60 E-value=9.3e-09 Score=94.31 Aligned_cols=98 Identities=15% Similarity=0.113 Sum_probs=60.5
Q ss_pred EEEEEEe----CCCcccccC---CceEEEEEEEC-Cc---chHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCc---
Q psy14042 12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-YK---PSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARA--- 76 (238)
Q Consensus 12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~---~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~--- 76 (238)
..+.||| ++|...... .+|++|+|+|. +. .+|+...+|...+.... ..++| +|+|+||+|+...
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTTCSSEEEEEECTTSTTCSSC
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-HcCCCEEEEEEECccCCCcccc
Confidence 5789999 778665543 89999999999 43 34443333333332211 15677 9999999999641
Q ss_pred c---cccHHHHHHHHHhC-------CCeEEEEccCCCCCHHHHH
Q psy14042 77 R---AVSSQDAKNLAASF-------KVKFIEVSVGIHHNVDELL 110 (238)
Q Consensus 77 ~---~v~~~~~~~~~~~~-------~~~~~evSA~t~~gv~elf 110 (238)
. ....+++..+++.. +++++++||++|.|++++|
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1 12233566666655 4679999999999998866
No 173
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.60 E-value=7.6e-08 Score=91.92 Aligned_cols=65 Identities=9% Similarity=0.035 Sum_probs=45.7
Q ss_pred EEECCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 5 LQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 5 i~~~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
..+....+.++||| ++|...... .+|++++|+|. +..... ...++..+.. .+.|+++|+||+|+.
T Consensus 67 ~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 67 APLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp EEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred eEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence 34444458899999 566554433 89999999999 543333 3355555554 579999999999987
No 174
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.58 E-value=3.5e-08 Score=90.29 Aligned_cols=97 Identities=13% Similarity=0.115 Sum_probs=64.5
Q ss_pred CeEEEEEEEe----CCCcccccC---CceEEEEEEECCcc----hHH---HHHHHHHHHHHhcCCCCCC-EEEEEEeccC
Q psy14042 9 SGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKP----SYH---RVEQDVIRLHEEGYLRTRP-AIIVANKIDL 73 (238)
Q Consensus 9 ~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~----s~~---~~~~~~~~l~~~~~~~~~p-iilVgNK~DL 73 (238)
.....+.||| ++|...... .+|++|+|+|.... +|+ .....+..+.. .++| +++|+||+|+
T Consensus 82 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl 157 (458)
T 1f60_A 82 TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDS 157 (458)
T ss_dssp CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGG
T ss_pred cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEcccc
Confidence 3447899999 666554332 99999999999433 231 23333333332 4565 9999999999
Q ss_pred CCc-cc---ccHHHHHHHHHhCC-----CeEEEEccCCCCCHHHH
Q psy14042 74 ARA-RA---VSSQDAKNLAASFK-----VKFIEVSVGIHHNVDEL 109 (238)
Q Consensus 74 ~~~-~~---v~~~~~~~~~~~~~-----~~~~evSA~t~~gv~el 109 (238)
... .+ ...+++..+++..+ ++++++||++|.|++++
T Consensus 158 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 158 VKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 731 11 22345666666655 68999999999999755
No 175
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.57 E-value=6.1e-08 Score=82.47 Aligned_cols=84 Identities=13% Similarity=0.058 Sum_probs=47.5
Q ss_pred CceEEEEEEECCcchHHH-HHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH--HHHHHHHHhCCCeEEEEccCCCC
Q psy14042 28 DETGLIIVWMLYKPSYHR-VEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS--QDAKNLAASFKVKFIEVSVGIHH 104 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~-~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~~~~~~~~~~~~~evSA~t~~ 104 (238)
.+|+++++.+.....+.. -..++..+. .++|+++|+||+|+....+... +.+.+.....+++++++||++++
T Consensus 115 r~~~~l~~i~~~~~~~~~~d~~~l~~l~-----~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~ 189 (274)
T 3t5d_A 115 RVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDE 189 (274)
T ss_dssp CCCEEEEEECSCCSSCCHHHHHHHHHHT-----TTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC------
T ss_pred ceeEEEEEecCCCCCCCHHHHHHHHHHh-----ccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCCh
Confidence 467888877652222222 233444442 2799999999999975444322 34555666789999999999999
Q ss_pred CHHHHHHHHHHH
Q psy14042 105 NVDELLVGILNQ 116 (238)
Q Consensus 105 gv~elf~~i~~~ 116 (238)
|+++++..|.+.
T Consensus 190 ~~~~l~~~l~~~ 201 (274)
T 3t5d_A 190 EENKLVKKIKDR 201 (274)
T ss_dssp -----CHHHHHT
T ss_pred hHHHHHHHHhcC
Confidence 999999988754
No 176
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.50 E-value=3.1e-08 Score=93.75 Aligned_cols=101 Identities=11% Similarity=0.028 Sum_probs=63.1
Q ss_pred eEEEEEEEe----CCCcccccC---CceEEEEEEECCcchHH----HHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYH----RVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA 78 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~----~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~ 78 (238)
..+++.||| ++|...... ++|++|+|+|.....|+ ...++...+.........|+|||+||+|+...++
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 346889999 777654433 99999999999443222 1122222222111113345999999999976332
Q ss_pred cc----HHHHHHHHHhC-----CCeEEEEccCCCCCHHHHH
Q psy14042 79 VS----SQDAKNLAASF-----KVKFIEVSVGIHHNVDELL 110 (238)
Q Consensus 79 v~----~~~~~~~~~~~-----~~~~~evSA~t~~gv~elf 110 (238)
.. .+++..+++.. +++++++||++|.|++++.
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 22 22344444444 3589999999999998763
No 177
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.46 E-value=1e-07 Score=81.88 Aligned_cols=97 Identities=7% Similarity=0.003 Sum_probs=68.1
Q ss_pred CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHH---HHHhcC-CCCCCEEEEEEe-ccCCCcccccHHHHHHHHH
Q psy14042 19 EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIR---LHEEGY-LRTRPAIIVANK-IDLARARAVSSQDAKNLAA 89 (238)
Q Consensus 19 e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~---l~~~~~-~~~~piilVgNK-~DL~~~~~v~~~~~~~~~~ 89 (238)
+++|.+|.. ++|++|+|.|. |++.++ .+..+.+ +..... ..++|++|.+|| .|++. ..+..++.+...
T Consensus 198 ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e~L~ 274 (312)
T 3l2o_B 198 YSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAHELH 274 (312)
T ss_dssp CCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHHHcC
Confidence 567888877 99999999999 887665 3333332 222221 368999999998 48853 334444433221
Q ss_pred ----hCCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 90 ----SFKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 90 ----~~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
...+.+..|||.||+|+.+.+++|++.+.
T Consensus 275 L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 275 LNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp GGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred CccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 23567899999999999999999997763
No 178
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.40 E-value=7.5e-07 Score=74.71 Aligned_cols=91 Identities=21% Similarity=0.175 Sum_probs=58.3
Q ss_pred CceEEEEEEECCcchHHHH-HHHHHHHHHhcCC-CCCCEEEEEE-eccCCCcccccH-------HHHHHHHHhCCCe---
Q psy14042 28 DETGLIIVWMLYKPSYHRV-EQDVIRLHEEGYL-RTRPAIIVAN-KIDLARARAVSS-------QDAKNLAASFKVK--- 94 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~-~~~~~~l~~~~~~-~~~piilVgN-K~DL~~~~~v~~-------~~~~~~~~~~~~~--- 94 (238)
++|++|+|+|+.+ |... ..+...+.+.... ...|.++|.| |+|+... .+.. .++..+++..+..
T Consensus 105 ~~d~il~V~d~~~--~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~ 181 (260)
T 2xtp_A 105 GPHVLLLVTQLGR--YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGGRICA 181 (260)
T ss_dssp CCSEEEEEEETTC--CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEE
T ss_pred CCcEEEEEEeCCC--CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEE
Confidence 8999999999932 2222 2222333333211 2456666555 9999743 2222 3355566666532
Q ss_pred E--EEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 95 F--IEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 95 ~--~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
+ +++||+++.|++++|..|.+.+....
T Consensus 182 ~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 182 FNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 3 78999999999999999999887643
No 179
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.38 E-value=4.9e-08 Score=83.35 Aligned_cols=86 Identities=13% Similarity=0.028 Sum_probs=55.6
Q ss_pred CceEEE-EEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHh--CC-CeEEEEccCC
Q psy14042 28 DETGLI-IVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAAS--FK-VKFIEVSVGI 102 (238)
Q Consensus 28 ~ad~~I-lV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~--~~-~~~~evSA~t 102 (238)
+++++| +|+|. +..+......+...+. ..+.|+++|+||+|+...+....+..+..... .+ .+++++||++
T Consensus 161 ~~~~~il~v~d~~~~~~~~~~~~~~~~~~----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~ 236 (299)
T 2aka_B 161 KENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKD 236 (299)
T ss_dssp STTEEEEEEEESSSCGGGCHHHHHHHHHC----TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBC
T ss_pred CCCeEEEEEecCCcchhhhHHHHHHHHhC----CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhh
Confidence 566565 68888 5444443334444442 25789999999999976544323222211011 13 3688999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy14042 103 HHNVDELLVGILNQI 117 (238)
Q Consensus 103 ~~gv~elf~~i~~~l 117 (238)
|.|++++|..+.+..
T Consensus 237 ~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 237 IDGKKDITAALAAER 251 (299)
T ss_dssp TTSCBCHHHHHHHHH
T ss_pred ccccccHHHHHHHHH
Confidence 999999999998743
No 180
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.33 E-value=3.6e-07 Score=72.53 Aligned_cols=68 Identities=15% Similarity=0.074 Sum_probs=53.3
Q ss_pred EEEEEEEe----CCCcccccC---C----ceEEEEEEEC--CcchHHHHHHHHHHHHHhc---CCCCCCEEEEEEeccCC
Q psy14042 11 KVRAIIWN----EQYEKLTSS---D----ETGLIIVWML--YKPSYHRVEQDVIRLHEEG---YLRTRPAIIVANKIDLA 74 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~----ad~~IlV~dv--d~~s~~~~~~~~~~l~~~~---~~~~~piilVgNK~DL~ 74 (238)
.+.+.+|| ++|+..+.. + +|++|+|||+ +..+|..+..|+.++.... ...+.|+++|+||+|+.
T Consensus 90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 169 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 169 (193)
T ss_dssp CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhc
Confidence 45688999 667665544 3 8999999999 5789999999988876543 22589999999999997
Q ss_pred Cccc
Q psy14042 75 RARA 78 (238)
Q Consensus 75 ~~~~ 78 (238)
..+.
T Consensus 170 ~~~~ 173 (193)
T 2ged_A 170 TARP 173 (193)
T ss_dssp TCCC
T ss_pred CCCC
Confidence 6443
No 181
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.32 E-value=5.7e-07 Score=74.57 Aligned_cols=91 Identities=13% Similarity=0.094 Sum_probs=59.2
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcC-CCCCCEEEEEEeccCCCccccc------HHHHHHHHHhCCCeEEEEc
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGY-LRTRPAIIVANKIDLARARAVS------SQDAKNLAASFKVKFIEVS 99 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~~~v~------~~~~~~~~~~~~~~~~evS 99 (238)
++|++|+|+|+ +... ....|+..+.+... ....|++||+||+|+...+.+. .+.++.+++..+..|+.++
T Consensus 112 ~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~ 189 (239)
T 3lxx_A 112 GPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALN 189 (239)
T ss_dssp CCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECC
T ss_pred CCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEE
Confidence 78999999998 4322 12233333332211 1346999999999997654443 2457778888888888787
Q ss_pred cCCC-----CCHHHHHHHHHHHHHhh
Q psy14042 100 VGIH-----HNVDELLVGILNQIRLK 120 (238)
Q Consensus 100 A~t~-----~gv~elf~~i~~~l~~~ 120 (238)
+..+ .++.++|..+.+.+.+.
T Consensus 190 ~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 190 NKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHc
Confidence 7654 68999999988877654
No 182
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.29 E-value=1.3e-07 Score=86.37 Aligned_cols=81 Identities=15% Similarity=0.231 Sum_probs=51.6
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCC-eEEEEccCCCCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV-KFIEVSVGIHHN 105 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~evSA~t~~g 105 (238)
++|++|+|+|. +..+ ....|+.++.+. .+.|++||+||+|+...+. ...++. ..++ +++++||++|.|
T Consensus 102 ~ad~il~VvD~~~~~~--~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 102 EADVIIFMVNGREGVT--AADEEVAKILYR---TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLG 171 (456)
T ss_dssp HCSEEEEEEESSSCSC--HHHHHHHHHHTT---CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTT
T ss_pred hCCEEEEEEeCCCCCC--hHHHHHHHHHHH---cCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeecccccc
Confidence 89999999998 4332 333444444332 6899999999999864321 111111 2233 467999999999
Q ss_pred HHHHHHHHHHHHH
Q psy14042 106 VDELLVGILNQIR 118 (238)
Q Consensus 106 v~elf~~i~~~l~ 118 (238)
+++++..+.+.+.
T Consensus 172 v~~L~~~i~~~l~ 184 (456)
T 4dcu_A 172 LGDLLDAVAEHFK 184 (456)
T ss_dssp HHHHHHHHHTTGG
T ss_pred hHHHHHHHHhhcc
Confidence 9999999987654
No 183
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.27 E-value=6.9e-07 Score=72.69 Aligned_cols=83 Identities=19% Similarity=0.189 Sum_probs=57.7
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhC--CCeEEEEccCCCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF--KVKFIEVSVGIHH 104 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~--~~~~~evSA~t~~ 104 (238)
.++.+++|+|. ..... ...+. .. .+.|.++|+||+|+........++....++.. +++++++||++|.
T Consensus 129 ~~~~~i~vvd~~~~~~~--~~~~~---~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~ 199 (221)
T 2wsm_A 129 GENYRVVMVSVTEGDDV--VEKHP---EI----FRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGK 199 (221)
T ss_dssp SCSEEEEEEEGGGCTTH--HHHCH---HH----HHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTB
T ss_pred ccCcEEEEEeCCCcchh--hhhhh---hh----hhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCC
Confidence 56788999998 43211 11111 11 24789999999999754434455555555543 5789999999999
Q ss_pred CHHHHHHHHHHHHHh
Q psy14042 105 NVDELLVGILNQIRL 119 (238)
Q Consensus 105 gv~elf~~i~~~l~~ 119 (238)
|++++|..|.+.+..
T Consensus 200 gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 200 GFEEWIDFLRGILNV 214 (221)
T ss_dssp THHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987744
No 184
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.24 E-value=2.5e-06 Score=81.75 Aligned_cols=60 Identities=18% Similarity=0.079 Sum_probs=46.7
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
.+.++||| ++|...+.. .+|++|+|+|. +..+++....|.. +.+ .+.|+++|+||+|+..
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTG 143 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTT
T ss_pred CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCccc
Confidence 37899999 566655544 89999999999 7777777766653 433 5799999999999864
No 185
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.23 E-value=1.7e-06 Score=82.96 Aligned_cols=105 Identities=12% Similarity=0.083 Sum_probs=71.2
Q ss_pred EEEEEe-C------CCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH
Q psy14042 13 RAIIWN-E------QYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS 81 (238)
Q Consensus 13 ~l~iWD-e------~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~ 81 (238)
.+.||| . ....++.. ++|++|+|+|. +..+..+...|...+.. .+.|+++|+||+|+.....+.+
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----~~~~iiiVlNK~Dl~~~~~~~~ 250 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG----RGLTVFFLVNAWDQVRESLIDP 250 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT----SCCCEEEEEECGGGGGGGCSST
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh----hCCCEEEEEECcccccccccCh
Confidence 589999 1 12222222 89999999999 77788777666554432 4678999999999975432211
Q ss_pred H----------HHH-----HHHHhC--------CCeEEEEccC--------------CCCCHHHHHHHHHHHHHhhh
Q psy14042 82 Q----------DAK-----NLAASF--------KVKFIEVSVG--------------IHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 82 ~----------~~~-----~~~~~~--------~~~~~evSA~--------------t~~gv~elf~~i~~~l~~~~ 121 (238)
+ ... .+.... ..+++++||+ ++.|+++++..+.+.+...+
T Consensus 251 ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 251 DDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHHhH
Confidence 1 111 111111 2469999999 99999999999998776543
No 186
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.22 E-value=2.3e-06 Score=73.35 Aligned_cols=84 Identities=13% Similarity=0.072 Sum_probs=61.4
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV 106 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv 106 (238)
.+|+++.|.|. ++.+..+ ..+.++. .+.|.++|+||+||..... .+....+.++.+++++.+||+++.|+
T Consensus 23 ~aDvVl~VvDAr~p~~~~~-----~~l~~~l--~~kp~ilVlNK~DL~~~~~--~~~~~~~~~~~g~~~i~iSA~~~~gi 93 (282)
T 1puj_A 23 LIDIVYELVDARIPMSSRN-----PMIEDIL--KNKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSINSVNGQGL 93 (282)
T ss_dssp GCSEEEEEEETTSTTTTSC-----HHHHHHC--SSSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECCTTTCTTG
T ss_pred hCCEEEEEEeCCCCCccCC-----HHHHHHH--CCCCEEEEEECcccCCHHH--HHHHHHHHHhcCCcEEEEECCCcccH
Confidence 89999999999 7666542 1122222 5799999999999976321 12223334456789999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy14042 107 DELLVGILNQIRLK 120 (238)
Q Consensus 107 ~elf~~i~~~l~~~ 120 (238)
++++..+.+.+...
T Consensus 94 ~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 94 NQIVPASKEILQEK 107 (282)
T ss_dssp GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988877644
No 187
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.22 E-value=3.2e-07 Score=83.01 Aligned_cols=85 Identities=14% Similarity=0.174 Sum_probs=51.0
Q ss_pred CceEEEEEEEC-Cc-chHHHHH-HHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH--HHHHHHHHhCCCeEEEEccCC
Q psy14042 28 DETGLIIVWML-YK-PSYHRVE-QDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS--QDAKNLAASFKVKFIEVSVGI 102 (238)
Q Consensus 28 ~ad~~IlV~dv-d~-~s~~~~~-~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~~~~~~~~~~~~~evSA~t 102 (238)
++++.+++|+. .. .+|.... .|+..+. .++|+|+|+||+|+...+++.. +++...+...++++|++||++
T Consensus 136 d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~ 210 (418)
T 2qag_C 136 DNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETD 210 (418)
T ss_dssp CC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC---
T ss_pred CCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCC
Confidence 67777777777 43 4676664 5666653 4689999999999987776665 677888888899999999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy14042 103 HHNVDELLVGILNQI 117 (238)
Q Consensus 103 ~~gv~elf~~i~~~l 117 (238)
+.+++++|..+...+
T Consensus 211 ~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 211 DEEENKLVKKIKDRL 225 (418)
T ss_dssp --------------C
T ss_pred CcCHHHHHHHHHhhC
Confidence 999999888887554
No 188
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.21 E-value=2.8e-07 Score=86.88 Aligned_cols=93 Identities=12% Similarity=0.055 Sum_probs=52.5
Q ss_pred EEEEEEEe----CCCcccccC---CceEEEEEEEC-Ccc---hH---HHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCC
Q psy14042 11 KVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKP---SY---HRVEQDVIRLHEEGYLRTRP-AIIVANKIDLAR 75 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~---s~---~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~ 75 (238)
...+.||| ++|...... .+|++|+|+|. +.. .| ......+..+.. .++| +|+|+||+|+..
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEecccccc
Confidence 36789999 777655444 89999999999 421 11 111222222222 4565 999999999975
Q ss_pred c-ccc---cHHHHHHHH-HhCCC-----eEEEEccCCCCCHH
Q psy14042 76 A-RAV---SSQDAKNLA-ASFKV-----KFIEVSVGIHHNVD 107 (238)
Q Consensus 76 ~-~~v---~~~~~~~~~-~~~~~-----~~~evSA~t~~gv~ 107 (238)
. ... ...++..+. +..++ +++++||++|.|++
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 2 111 123444555 55554 79999999999998
No 189
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.20 E-value=3.2e-06 Score=78.66 Aligned_cols=61 Identities=15% Similarity=0.081 Sum_probs=41.4
Q ss_pred eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
..+.+.||| ++|...+.. .+|++|+|+|. +..... ...+.. .....++|+++|+||+|+..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~----~~~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 80 HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLME----VTRLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHH----HHTTTTCCEEEEEECTTSCC
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHH----HHHHcCCCEEEEEcCcCCcc
Confidence 347899999 667654333 99999999999 543222 122222 22236799999999999964
No 190
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.16 E-value=6.4e-06 Score=79.09 Aligned_cols=61 Identities=15% Similarity=0.068 Sum_probs=44.8
Q ss_pred eEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 10 GKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
..+.++||| ++|...+.. .+|++|+|+|. +....+....|. .+.. .+.|+++|+||+|+..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~----~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 80 EPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK----YKVPRIAFVNKMDRMG 148 (704)
T ss_pred CceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH----cCCCEEEEEeCCCccc
Confidence 448899999 667655544 89999999999 655555544443 3332 5799999999999853
No 191
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.13 E-value=4.4e-06 Score=69.91 Aligned_cols=92 Identities=17% Similarity=0.097 Sum_probs=62.2
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCC--CCCCEEEEEEeccCCCcccc---c---HHHHHHHHHhCCCeEEEEc
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYL--RTRPAIIVANKIDLARARAV---S---SQDAKNLAASFKVKFIEVS 99 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~--~~~piilVgNK~DL~~~~~v---~---~~~~~~~~~~~~~~~~evS 99 (238)
++|++|+|+|+.+.+- ....++..+.+.... .+.|+||++||.||...... . .+.++.+.+..+..|+.++
T Consensus 105 ~~d~il~V~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~ 183 (247)
T 3lxw_A 105 GPHALLLVTQLGRFTA-QDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFD 183 (247)
T ss_dssp CCSEEEEEEETTBCCH-HHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECC
T ss_pred CCCEEEEEEeCCCCCH-HHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEe
Confidence 8999999999943221 122333444433211 37899999999999753211 1 1346778888888777666
Q ss_pred cCC-----CCCHHHHHHHHHHHHHhh
Q psy14042 100 VGI-----HHNVDELLVGILNQIRLK 120 (238)
Q Consensus 100 A~t-----~~gv~elf~~i~~~l~~~ 120 (238)
+.. +.|+++|+..|.+.+.+.
T Consensus 184 ~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 184 NRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHc
Confidence 554 589999999999888764
No 192
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.11 E-value=1.6e-05 Score=63.79 Aligned_cols=87 Identities=14% Similarity=0.083 Sum_probs=61.0
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccc--ccHHHHHHHHHhCC--CeEEEEccCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA--VSSQDAKNLAASFK--VKFIEVSVGI 102 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~--v~~~~~~~~~~~~~--~~~~evSA~t 102 (238)
.++++++++|+ +..++... .....+.. .+.|+++|+||+|+....+ ...+.++.++...+ +.++++||++
T Consensus 108 ~~~~~~~v~d~~~~~~~~~~-~~~~~~~~----~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~ 182 (210)
T 1pui_A 108 SLQGLVVLMDIRHPLKDLDQ-QMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLK 182 (210)
T ss_dssp TEEEEEEEEETTSCCCHHHH-HHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTT
T ss_pred cccEEEEEEECCCCCchhHH-HHHHHHHH----cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecC
Confidence 68999999999 65555421 11222222 5689999999999875432 22345566665554 5789999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy14042 103 HHNVDELLVGILNQIRL 119 (238)
Q Consensus 103 ~~gv~elf~~i~~~l~~ 119 (238)
+.|+++++..|.+.+.+
T Consensus 183 ~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 183 KQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp TBSHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999876543
No 193
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.10 E-value=3.4e-06 Score=74.39 Aligned_cols=99 Identities=9% Similarity=0.076 Sum_probs=64.4
Q ss_pred EEEEEEe-CCCccccc---CCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH--HHH
Q psy14042 12 VRAIIWN-EQYEKLTS---SDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS--QDA 84 (238)
Q Consensus 12 v~l~iWD-e~~~~l~~---~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~ 84 (238)
+.+.||| .-+..... ..+|++|+|+|. ..+.+..+. ....+.|.++|+||+|+........ .+.
T Consensus 172 ~~~iiiDTpGi~~~~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l 242 (355)
T 3p32_A 172 FDVILIETVGVGQSEVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVVNKADGEHHKEARLAAREL 242 (355)
T ss_dssp CCEEEEEECSCSSHHHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEEECCCGGGHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCcHHHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEEECCCCcChhHHHHHHHHH
Confidence 5688999 32222111 289999999998 444333211 0113469999999999975433211 122
Q ss_pred HHHHH-------hCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 85 KNLAA-------SFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 85 ~~~~~-------~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
..... .++.+++++||++|.|+++++..|.+.+..
T Consensus 243 ~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 243 SAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 22211 125789999999999999999999988865
No 194
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.05 E-value=1.4e-06 Score=76.97 Aligned_cols=87 Identities=11% Similarity=0.036 Sum_probs=60.4
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV 106 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv 106 (238)
++|++|+|++. +.+... ..|+..+.... ..+.|+++|+||+|+...+....+.+..++...+.+|+++|+.++.++
T Consensus 172 ~~d~iilvv~~~~~~~~~--~~~~~l~~~~~-~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i 248 (360)
T 3t34_A 172 KPNCIILAISPANQDLAT--SDAIKISREVD-PSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADI 248 (360)
T ss_dssp SSSEEEEEEEETTSCGGG--CHHHHHHHHSC-TTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHH
T ss_pred cCCeEEEEeecccCCcCC--HHHHHHHHHhc-ccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHh
Confidence 89999999876 443332 33444443333 357899999999999876655555555555567889999999999998
Q ss_pred HHHHHHHHHHH
Q psy14042 107 DELLVGILNQI 117 (238)
Q Consensus 107 ~elf~~i~~~l 117 (238)
++.+..+....
T Consensus 249 ~~~~~~~~~~~ 259 (360)
T 3t34_A 249 NKNVDMIAARK 259 (360)
T ss_dssp HTTCCHHHHHH
T ss_pred ccCCCHHHHHH
Confidence 87766544433
No 195
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.00 E-value=2.2e-05 Score=75.22 Aligned_cols=59 Identities=15% Similarity=0.039 Sum_probs=45.5
Q ss_pred EEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 12 VRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
+.+.||| .+|...+.. .+|++|+|+|. +..+++....|. .+.+ .+.|+++|+||+|+..
T Consensus 75 ~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~----~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 75 HRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT----YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp EEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTT
T ss_pred eeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH----cCCCEEEEEECCCccc
Confidence 6789999 566554443 89999999999 777777766654 3444 5789999999999964
No 196
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.98 E-value=7.5e-06 Score=73.47 Aligned_cols=49 Identities=18% Similarity=0.134 Sum_probs=34.3
Q ss_pred CCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHH
Q psy14042 61 TRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLV 111 (238)
Q Consensus 61 ~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~ 111 (238)
..|+++|+||+|+... ...+...+.....+.+++.+||+.+.|+.+++.
T Consensus 214 ~kP~i~v~NK~D~~~~--~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAASD--EQIKRLVREEEKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGSCH--HHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCccccch--HHHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence 4899999999998721 111223333333478999999999999887654
No 197
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.94 E-value=8e-06 Score=70.86 Aligned_cols=90 Identities=12% Similarity=0.118 Sum_probs=60.3
Q ss_pred CCCcccccC---CceEEEEEEEC-Cc-chHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc--cHHHHHHHHHhC
Q psy14042 19 EQYEKLTSS---DETGLIIVWML-YK-PSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV--SSQDAKNLAASF 91 (238)
Q Consensus 19 e~~~~l~~~---~ad~~IlV~dv-d~-~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~~~~~ 91 (238)
+|-..+... ++|.+++|.|. ++ .+...+..++..+.. .++|.+||.||+||...... ..+......+..
T Consensus 74 ~R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~----~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~ 149 (307)
T 1t9h_A 74 ERTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI 149 (307)
T ss_dssp CCSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC
Confidence 444444443 99999999999 44 344444444433322 67999999999999765321 122333444456
Q ss_pred CCeEEEEccCCCCCHHHHHHH
Q psy14042 92 KVKFIEVSVGIHHNVDELLVG 112 (238)
Q Consensus 92 ~~~~~evSA~t~~gv~elf~~ 112 (238)
|.+++.+||.++.|+++++..
T Consensus 150 g~~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 150 GYDVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp TCCEEECCHHHHTTCTTTGGG
T ss_pred CCeEEEEecCCCCCHHHHHhh
Confidence 889999999999998877653
No 198
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.91 E-value=2.1e-05 Score=65.48 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=42.2
Q ss_pred CCCCEEEEEEeccCCCcccccH--H---HHH----H-----------------HHHhCC--CeEEEEccCCCCCHHHHHH
Q psy14042 60 RTRPAIIVANKIDLARARAVSS--Q---DAK----N-----------------LAASFK--VKFIEVSVGIHHNVDELLV 111 (238)
Q Consensus 60 ~~~piilVgNK~DL~~~~~v~~--~---~~~----~-----------------~~~~~~--~~~~evSA~t~~gv~elf~ 111 (238)
.+.|+++|+||+|+....++.. + +.. . ++++++ .+++++||+++.|+++++.
T Consensus 170 ~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 249 (262)
T 1yrb_A 170 LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLET 249 (262)
T ss_dssp HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHH
T ss_pred cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHH
Confidence 4689999999999976442210 0 000 1 123333 4899999999999999999
Q ss_pred HHHHHHHh
Q psy14042 112 GILNQIRL 119 (238)
Q Consensus 112 ~i~~~l~~ 119 (238)
.|.+.+..
T Consensus 250 ~i~~~~~~ 257 (262)
T 1yrb_A 250 LAYEHYCT 257 (262)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 99987754
No 199
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.86 E-value=8.9e-06 Score=69.85 Aligned_cols=89 Identities=13% Similarity=0.070 Sum_probs=54.6
Q ss_pred CceEEEEEEEC-CcchH-HHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccC---C
Q psy14042 28 DETGLIIVWML-YKPSY-HRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVG---I 102 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~-~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~---t 102 (238)
++|++++|+|. +.+.. .....+...+. ..+.|+++|+||+|+........+.++......+.+|+++|+. +
T Consensus 167 ~~d~iilvvd~~~~~~~~~~~~~i~~~~~----~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~ 242 (315)
T 1jwy_B 167 KQNAIIVAVTPANTDLANSDALQLAKEVD----PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQED 242 (315)
T ss_dssp STTEEEEEEEESSSCSTTCSHHHHHHHHC----SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHH
T ss_pred CCCeEEEEEEecCcchhhhHHHHHHHHhC----CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhh
Confidence 89999999997 43311 11112333322 2678999999999997554422222221111223566666654 4
Q ss_pred ---CCCHHHHHHHHHHHHHhh
Q psy14042 103 ---HHNVDELLVGILNQIRLK 120 (238)
Q Consensus 103 ---~~gv~elf~~i~~~l~~~ 120 (238)
+.|+++++..+.+.+...
T Consensus 243 ~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 243 IIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp HSSSCCHHHHHHHHHHHHHTC
T ss_pred hccCCCHHHHHHHHHHHHhCC
Confidence 789999999998887654
No 200
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.79 E-value=7.7e-05 Score=65.98 Aligned_cols=81 Identities=16% Similarity=0.218 Sum_probs=56.2
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCccccc-HHHHHHHHHhCCCeEEEEccCCCCC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS-SQDAKNLAASFKVKFIEVSVGIHHN 105 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~-~~~~~~~~~~~~~~~~evSA~t~~g 105 (238)
++|.+++|... ...+...+..++..... .++|.+||.||+||....... .+.........|++++.+||.++.|
T Consensus 130 nvD~v~iv~a~~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~g 205 (358)
T 2rcn_A 130 NIDQIVIVSAILPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDG 205 (358)
T ss_dssp CCCEEEEEEESTTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBT
T ss_pred cCCEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcC
Confidence 89999999777 34444555555544433 568889999999997653210 1122233446789999999999999
Q ss_pred HHHHHHH
Q psy14042 106 VDELLVG 112 (238)
Q Consensus 106 v~elf~~ 112 (238)
++++...
T Consensus 206 l~~L~~~ 212 (358)
T 2rcn_A 206 LKPLEEA 212 (358)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988764
No 201
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.66 E-value=5.9e-05 Score=63.62 Aligned_cols=70 Identities=9% Similarity=-0.058 Sum_probs=46.9
Q ss_pred eEEEEEEEe----CCCccccc------------CCceEEEEEEECCcchHHHH-HHHHHHHHHhcCC-CCCCEEEEEEec
Q psy14042 10 GKVRAIIWN----EQYEKLTS------------SDETGLIIVWMLYKPSYHRV-EQDVIRLHEEGYL-RTRPAIIVANKI 71 (238)
Q Consensus 10 ~~v~l~iWD----e~~~~l~~------------~~ad~~IlV~dvd~~s~~~~-~~~~~~l~~~~~~-~~~piilVgNK~ 71 (238)
..+.+.||| +++..+.. .++|++|+|+|++..++... ..|+..+...... ...|+++|+||+
T Consensus 85 ~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~ 164 (270)
T 1h65_A 85 AGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHA 164 (270)
T ss_dssp TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECC
T ss_pred CCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECc
Confidence 346899999 34432221 16999999999954445543 4788777665321 227999999999
Q ss_pred cCCCcccc
Q psy14042 72 DLARARAV 79 (238)
Q Consensus 72 DL~~~~~v 79 (238)
|+...+..
T Consensus 165 Dl~~~~~~ 172 (270)
T 1h65_A 165 QFSPPDGL 172 (270)
T ss_dssp SCCCGGGC
T ss_pred ccCCcCCC
Confidence 99755443
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.65 E-value=3.4e-05 Score=67.59 Aligned_cols=98 Identities=14% Similarity=0.091 Sum_probs=60.2
Q ss_pred EEEEEEe-CC---CcccccCCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH--HHH
Q psy14042 12 VRAIIWN-EQ---YEKLTSSDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS--QDA 84 (238)
Q Consensus 12 v~l~iWD-e~---~~~l~~~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~ 84 (238)
+.+.||| .- +.......+|++++|+|. ..+.++.+.. .. .+.|.++|+||+|+.....+.. ++.
T Consensus 149 ~~i~liDTpG~~~~~~~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~l 219 (341)
T 2p67_A 149 YDVVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAIARHMY 219 (341)
T ss_dssp CSEEEEEEECCTTHHHHHHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCccchHHHHHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHHHHHHH
Confidence 5688999 22 222222389999999998 4332211110 00 1468899999999975432221 122
Q ss_pred HHHHHhC-------CCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 85 KNLAASF-------KVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 85 ~~~~~~~-------~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
+...... ..+++++||++|.|+++++..|.+.+.
T Consensus 220 ~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 220 ESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 2222222 457899999999999999999998765
No 203
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.64 E-value=2.8e-05 Score=65.78 Aligned_cols=75 Identities=11% Similarity=-0.047 Sum_probs=53.1
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV 106 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv 106 (238)
++|+++.|.|. ++.+..+.. +. . . +.|.++|.||+||..... .+....+.+..|.++ .+||+++.|+
T Consensus 21 ~~D~vl~VvDar~P~~~~~~~-----l~-l--l-~k~~iivlNK~DL~~~~~--~~~~~~~~~~~g~~v-~iSa~~~~gi 88 (262)
T 3cnl_A 21 LVNTVVEVRDARAPFATSAYG-----VD-F--S-RKETIILLNKVDIADEKT--TKKWVEFFKKQGKRV-ITTHKGEPRK 88 (262)
T ss_dssp TCSEEEEEEETTSTTTTSCTT-----SC-C--T-TSEEEEEEECGGGSCHHH--HHHHHHHHHHTTCCE-EECCTTSCHH
T ss_pred hCCEEEEEeeCCCCCcCcChH-----HH-h--c-CCCcEEEEECccCCCHHH--HHHHHHHHHHcCCeE-EEECCCCcCH
Confidence 89999999999 665544210 00 1 1 789999999999976422 112233444567888 9999999999
Q ss_pred HHHHHHHH
Q psy14042 107 DELLVGIL 114 (238)
Q Consensus 107 ~elf~~i~ 114 (238)
++++..+.
T Consensus 89 ~~L~~~l~ 96 (262)
T 3cnl_A 89 VLLKKLSF 96 (262)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHH
Confidence 99887764
No 204
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.50 E-value=5e-06 Score=73.19 Aligned_cols=56 Identities=13% Similarity=0.081 Sum_probs=38.6
Q ss_pred CCCCEEEEEEeccCCCcccccHHHHHHH--HHhCC-CeEEEEccCCCCCHHHHHHHHHH
Q psy14042 60 RTRPAIIVANKIDLARARAVSSQDAKNL--AASFK-VKFIEVSVGIHHNVDELLVGILN 115 (238)
Q Consensus 60 ~~~piilVgNK~DL~~~~~v~~~~~~~~--~~~~~-~~~~evSA~t~~gv~elf~~i~~ 115 (238)
.+.|+++|+||+|+........+..+.. ....+ .+++++||+++.|+++++..+.+
T Consensus 196 ~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 196 QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 6789999999999975443222111110 01123 35788999999999999999986
No 205
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.43 E-value=0.00012 Score=61.50 Aligned_cols=72 Identities=11% Similarity=-0.026 Sum_probs=47.6
Q ss_pred EECCeEEEEEEEe----CCCccccc------------CCceEEEEEEECCcchHHHH-HHHHHHHHHhcCC-CCCCEEEE
Q psy14042 6 QGHSGKVRAIIWN----EQYEKLTS------------SDETGLIIVWMLYKPSYHRV-EQDVIRLHEEGYL-RTRPAIIV 67 (238)
Q Consensus 6 ~~~~~~v~l~iWD----e~~~~l~~------------~~ad~~IlV~dvd~~s~~~~-~~~~~~l~~~~~~-~~~piilV 67 (238)
..++ ..+.||| ++|..+.. .++|++|+|++++...+... ..|+..+...... ...|+++|
T Consensus 80 ~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv 157 (262)
T 3def_A 80 TMGG--FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLV 157 (262)
T ss_dssp EETT--EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred EECC--eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEE
Confidence 4444 5889999 44433221 17899999999954335544 4788887765422 23599999
Q ss_pred EEeccCCCcccc
Q psy14042 68 ANKIDLARARAV 79 (238)
Q Consensus 68 gNK~DL~~~~~v 79 (238)
+||+|+...+..
T Consensus 158 ~nK~Dl~~~~~~ 169 (262)
T 3def_A 158 LTHAQFSPPDEL 169 (262)
T ss_dssp EECTTCCCSTTC
T ss_pred EeCcccCCCCCc
Confidence 999999644333
No 206
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.31 E-value=0.00042 Score=67.77 Aligned_cols=62 Identities=11% Similarity=0.050 Sum_probs=49.3
Q ss_pred CCeEEEEEEEe----CCCcccccC---CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 8 HSGKVRAIIWN----EQYEKLTSS---DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 8 ~~~~v~l~iWD----e~~~~l~~~---~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
++..+.++||| ++|...+.. .+|++|+|+|. +..+++....|... .. .+.|+++|+||+|+.
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQA-LG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHH-HH----TTCEEEEEEECHHHH
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH-HH----cCCCeEEEEECCCcc
Confidence 44578999999 777766554 99999999999 87788877666533 22 578999999999985
No 207
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.21 E-value=0.00058 Score=59.98 Aligned_cols=98 Identities=9% Similarity=0.056 Sum_probs=56.2
Q ss_pred EEEEEEe-CCCc--ccc-cCCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHH
Q psy14042 12 VRAIIWN-EQYE--KLT-SSDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKN 86 (238)
Q Consensus 12 v~l~iWD-e~~~--~l~-~~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~ 86 (238)
+.+.++| --+. ... ...+|++++|+|. .....+.+. .. .-+.|.++|.||+|+........ ....
T Consensus 167 ~~~iliDT~Gi~~~~~~l~~~~d~vl~V~d~~~~~~~~~i~---~~------il~~~~ivVlNK~Dl~~~~~~~~-~~~~ 236 (349)
T 2www_A 167 YDIILIETVGVGQSEFAVADMVDMFVLLLPPAGGDELQGIK---RG------IIEMADLVAVTKSDGDLIVPARR-IQAE 236 (349)
T ss_dssp CSEEEEECCCC--CHHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH-HHHH
T ss_pred CCEEEEECCCcchhhhhHHhhCCEEEEEEcCCcchhHHHhH---HH------HHhcCCEEEEeeecCCCchhHHH-HHHH
Confidence 3567888 2222 111 1189999999998 433222111 11 13468899999999964321110 1111
Q ss_pred HHH----------hCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 87 LAA----------SFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 87 ~~~----------~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
+.. .++.+++.+||++|.|+++++..|.+.+..
T Consensus 237 l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 237 YVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 211 124578999999999999999999887643
No 208
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.17 E-value=0.004 Score=55.07 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=43.2
Q ss_pred CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCC----------------------CCCHHHHHHHHHHHH
Q psy14042 60 RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGI----------------------HHNVDELLVGILNQI 117 (238)
Q Consensus 60 ~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t----------------------~~gv~elf~~i~~~l 117 (238)
...|+++++||.|..-........++.+++..+.+++.+||+. ..|++.+...+.+.+
T Consensus 198 t~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L 277 (363)
T 1jal_A 198 TLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALL 277 (363)
T ss_dssp TTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHT
T ss_pred cCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHh
Confidence 3589999999999753223345677788888899999999764 367777777766554
Q ss_pred H
Q psy14042 118 R 118 (238)
Q Consensus 118 ~ 118 (238)
-
T Consensus 278 ~ 278 (363)
T 1jal_A 278 N 278 (363)
T ss_dssp T
T ss_pred C
Confidence 3
No 209
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.10 E-value=0.0023 Score=56.70 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=34.6
Q ss_pred CCCEEEEEEeccCC--Cc-ccccHHHHHHHHHhCCCeEEEEccCCCCCHH
Q psy14042 61 TRPAIIVANKIDLA--RA-RAVSSQDAKNLAASFKVKFIEVSVGIHHNVD 107 (238)
Q Consensus 61 ~~piilVgNK~DL~--~~-~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~ 107 (238)
..|+++++||.|.. +. +....+.++.+++..+.+++++||++..++.
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~ 250 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELA 250 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHH
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHH
Confidence 47999999999843 22 1344567788888889999999998844433
No 210
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.85 E-value=0.003 Score=58.79 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=38.8
Q ss_pred EEEEEEe----CCCcccc-cC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 12 VRAIIWN----EQYEKLT-SS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 12 v~l~iWD----e~~~~l~-~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
++++|.| ..|..-. .. -+|++|+|.|....--...+.....+.+ .++|.+++.||+|.+.
T Consensus 100 ~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~----~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 100 RVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM----RATPVMTFVNKMDREA 166 (548)
T ss_dssp EEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCCEEEEEECTTSCC
T ss_pred EEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH----hCCceEEEEecccchh
Confidence 6788999 4443222 22 7999999999932222222333344444 6799999999999853
No 211
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.74 E-value=0.0021 Score=56.10 Aligned_cols=98 Identities=12% Similarity=0.110 Sum_probs=55.9
Q ss_pred EEEEEEe-CCCcc--cc-cCCceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHH
Q psy14042 12 VRAIIWN-EQYEK--LT-SSDETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKN 86 (238)
Q Consensus 12 v~l~iWD-e~~~~--l~-~~~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~ 86 (238)
+.+.++| --++. .. ...+|.+++|+|. ..+..+.+.. .+ .+.|.++|.||+|+......+....+.
T Consensus 148 ~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~---~i------~~~~~ivvlNK~Dl~~~~~~s~~~~~~ 218 (337)
T 2qm8_A 148 FDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKK---GI------FELADMIAVNKADDGDGERRASAAASE 218 (337)
T ss_dssp CCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCT---TH------HHHCSEEEEECCSTTCCHHHHHHHHHH
T ss_pred CCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHH---HH------hccccEEEEEchhccCchhHHHHHHHH
Confidence 4567777 22211 11 1289999999987 3322211110 01 124667778999975433222222333
Q ss_pred HHHh----------CCCeEEEEccCCCCCHHHHHHHHHHHHH
Q psy14042 87 LAAS----------FKVKFIEVSVGIHHNVDELLVGILNQIR 118 (238)
Q Consensus 87 ~~~~----------~~~~~~evSA~t~~gv~elf~~i~~~l~ 118 (238)
+... +..+++.+||+++.|+++++..|.+...
T Consensus 219 l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 219 YRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3221 1357899999999999999999988764
No 212
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.45 E-value=0.0012 Score=63.79 Aligned_cols=83 Identities=8% Similarity=0.011 Sum_probs=54.1
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHh----CC-CeEEEEccC
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAAS----FK-VKFIEVSVG 101 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~----~~-~~~~evSA~ 101 (238)
.+|.+++|.|. ....-.+...++..+.. .+.|+++|.||+|+............ .+. .+ .+++.+||+
T Consensus 187 ~aDlIL~VVDAs~~~~~~d~l~ll~~L~~----~g~pvIlVlNKiDlv~~~~~~~~il~--~~~~~l~lg~~~VV~iSA~ 260 (772)
T 3zvr_A 187 ENCLILAVSPANSDLANSDALKIAKEVDP----QGQRTIGVITKLDLMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQK 260 (772)
T ss_dssp TTEEEEEEEETTSCSSSCHHHHHHHHHCT----TCSSEEEEEECTTSSCTTCCSHHHHT--TCSSCCSSCEEECCCCCCE
T ss_pred CCcEEEEEEcCCCCcchhHHHHHHHHHHh----cCCCEEEEEeCcccCCcchhhHHHHH--HHhhhhhccCCceEEeccc
Confidence 78999999988 43222222233444332 67899999999999765443322111 111 13 357789999
Q ss_pred CCCCHHHHHHHHHHH
Q psy14042 102 IHHNVDELLVGILNQ 116 (238)
Q Consensus 102 t~~gv~elf~~i~~~ 116 (238)
+|.|+++++..+.+.
T Consensus 261 ~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 261 DIDGKKDITAALAAE 275 (772)
T ss_dssp ESSSSEEHHHHHHHH
T ss_pred ccccchhHHHHHHHH
Confidence 999999999998864
No 213
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.35 E-value=0.0011 Score=61.71 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=37.6
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccc
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAV 79 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v 79 (238)
++|++|+|+|. +.........|+..+.+ .+.|+++|+||+|+...+++
T Consensus 188 ~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl~~~~el 236 (550)
T 2qpt_A 188 RVDLIILLFDAHKLEISDEFSEAIGALRG----HEDKIRVVLNKADMVETQQL 236 (550)
T ss_dssp HCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGGEEEEEECGGGSCHHHH
T ss_pred hCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCCEEEEEECCCccCHHHH
Confidence 79999999999 55566667777776643 46899999999999765443
No 214
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=95.86 E-value=0.051 Score=48.48 Aligned_cols=78 Identities=14% Similarity=0.082 Sum_probs=56.1
Q ss_pred ceEEeecccCc-eeeecccc---------eeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCC-CCcee
Q psy14042 145 SAVIVGSVDGN-RIWGKEFK---------KTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPG-SEMGE 213 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~~---------~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~-~~~~~ 213 (238)
.....++.+|. ++|..+-. ...+..+.|+|++..+..|..+|.|++||..|.....+..+.... .....
T Consensus 163 ~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 242 (434)
T 2oit_A 163 SMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVR 242 (434)
T ss_dssp TEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEE
T ss_pred CEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCcee
Confidence 34556778887 88864321 125778899999999999999999999999987665555443221 12358
Q ss_pred EEEEEeecC
Q psy14042 214 IAALKYYLN 222 (238)
Q Consensus 214 i~~~~w~~~ 222 (238)
+.++.|..+
T Consensus 243 v~~v~w~~~ 251 (434)
T 2oit_A 243 VLDVLWIGT 251 (434)
T ss_dssp EEEEEEEET
T ss_pred EEEEEEecC
Confidence 999999764
No 215
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.055 Score=50.64 Aligned_cols=75 Identities=12% Similarity=0.297 Sum_probs=53.1
Q ss_pred eEEeecccCc-eeeecc-----c-cee-----eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCee--------eeeeeec
Q psy14042 146 AVIVGSVDGN-RIWGKE-----F-KKT-----SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFM--------NKVSMWS 205 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~-----~-~~~-----~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~--------~~~~~~~ 205 (238)
...+.+.+|+ ++|..+ + ... .+..+.||||++.+..|+.+|+|++||.++..+ ..+..+.
T Consensus 99 ~LAs~s~dg~V~iwd~~~~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~ 178 (588)
T 2j04_A 99 WMAVLSNNGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD 178 (588)
T ss_dssp CEEEEETTSCEEEEETTEEEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC
T ss_pred EEEEEeCCCcEEEEeCCceeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccc
Confidence 3456778888 999621 1 211 388899999999999999999999999987642 3232221
Q ss_pred CCCCCceeEEEEEeecC
Q psy14042 206 GPGSEMGEIAALKYYLN 222 (238)
Q Consensus 206 ~~~~~~~~i~~~~w~~~ 222 (238)
......|.++.|..+
T Consensus 179 --~gh~~~V~sVawSPd 193 (588)
T 2j04_A 179 --AGSKDWVTHIVWYED 193 (588)
T ss_dssp --TTCCCCEEEEEEETT
T ss_pred --ccccccEEEEEEcCC
Confidence 123467999988854
No 216
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.06 Score=45.91 Aligned_cols=51 Identities=16% Similarity=0.502 Sum_probs=43.0
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
.+..+.|+|++..+..|..+|.|++||..|..+..+.-+ ..+|.++.|...
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~------~~~v~~~~~~~~ 160 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFH------RAPIVSVKWNKD 160 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCC------CSCEEEEEECTT
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCC------CccEEEEEECCC
Confidence 678889999999999999999999999989888776644 456888888654
No 217
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=95.00 E-value=0.1 Score=47.05 Aligned_cols=69 Identities=17% Similarity=0.398 Sum_probs=50.3
Q ss_pred EEeecccCc-eeeecccc--------eeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEE
Q psy14042 147 VIVGSVDGN-RIWGKEFK--------KTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAAL 217 (238)
Q Consensus 147 ~~~~~~~g~-rv~g~~~~--------~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 217 (238)
.+.++.+|. ++|...-+ ...+..+.|+|+++.+..|..+|.|+|||..|..+..+.-+ ..+|.++
T Consensus 31 las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~~~~~~~~------~~~v~~~ 104 (577)
T 2ymu_A 31 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH------SSSVRGV 104 (577)
T ss_dssp EEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCC------SSCEEEE
T ss_pred EEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEECC------CCCEEEE
Confidence 445666776 77753211 12567789999999999999999999999999887766544 3456677
Q ss_pred Eeec
Q psy14042 218 KYYL 221 (238)
Q Consensus 218 ~w~~ 221 (238)
.|..
T Consensus 105 ~~s~ 108 (577)
T 2ymu_A 105 AFSP 108 (577)
T ss_dssp EECT
T ss_pred EECC
Confidence 7654
No 218
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=94.95 E-value=0.098 Score=43.59 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=52.7
Q ss_pred EEeecccCc-eeeeccccee------------------------eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeee
Q psy14042 147 VIVGSVDGN-RIWGKEFKKT------------------------SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNK 200 (238)
Q Consensus 147 ~~~~~~~g~-rv~g~~~~~~------------------------~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~ 200 (238)
.+.++.+|. ++|.-..... .+..+.|+|++..+..|..+|.|++||.. |..+..
T Consensus 231 ~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 310 (368)
T 3mmy_A 231 FALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310 (368)
T ss_dssp EEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEE
Confidence 566777887 8886543210 37889999999999999999999999986 555555
Q ss_pred eeeecCCCCCceeEEEEEeecCC
Q psy14042 201 VSMWSGPGSEMGEIAALKYYLNR 223 (238)
Q Consensus 201 ~~~~~~~~~~~~~i~~~~w~~~~ 223 (238)
+.-+ ..+|.++.|....
T Consensus 311 ~~~~------~~~v~~~~~s~~g 327 (368)
T 3mmy_A 311 SEQL------DQPISACCFNHNG 327 (368)
T ss_dssp CCCC------SSCEEEEEECTTS
T ss_pred ecCC------CCCceEEEECCCC
Confidence 5433 4578888887643
No 219
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=94.91 E-value=0.14 Score=43.66 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=54.3
Q ss_pred ceEEeecccCc-eeeecccce-----------eeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCce
Q psy14042 145 SAVIVGSVDGN-RIWGKEFKK-----------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMG 212 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~~~-----------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~ 212 (238)
...+.++.+|. ++|...-.. ..+..+.|+|++..+..|..+|.|++||..|..+..+.-+ ..
T Consensus 132 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h------~~ 205 (383)
T 3ei3_B 132 NQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLH------KA 205 (383)
T ss_dssp EEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECS------SS
T ss_pred CEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccC------CC
Confidence 34456677777 888643110 1477889999999999999999999999998887776654 45
Q ss_pred eEEEEEeecCC
Q psy14042 213 EIAALKYYLNR 223 (238)
Q Consensus 213 ~i~~~~w~~~~ 223 (238)
.|.++.|....
T Consensus 206 ~v~~~~~~~~~ 216 (383)
T 3ei3_B 206 KVTHAEFNPRC 216 (383)
T ss_dssp CEEEEEECSSC
T ss_pred cEEEEEECCCC
Confidence 67788886543
No 220
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=94.89 E-value=0.18 Score=41.86 Aligned_cols=69 Identities=17% Similarity=0.344 Sum_probs=51.0
Q ss_pred eEEeecccCc-eeeeccc------------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCce
Q psy14042 146 AVIVGSVDGN-RIWGKEF------------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMG 212 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~------------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~ 212 (238)
..+.++.+|. ++|...- .. .+..+.|+|++..+..|..+|.|++||........+.-+ ..
T Consensus 56 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------~~ 128 (368)
T 3mmy_A 56 FLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG-PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQH------DA 128 (368)
T ss_dssp EEEEEETTSEEEEEEECTTSCEEEEEEEECSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC------SS
T ss_pred EEEEECCCCcEEEEEcCCCCceeEEEeccccC-CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccc------cC
Confidence 4556777777 8885432 21 467789999999999999999999999976665544333 45
Q ss_pred eEEEEEeec
Q psy14042 213 EIAALKYYL 221 (238)
Q Consensus 213 ~i~~~~w~~ 221 (238)
+|.++.|..
T Consensus 129 ~v~~~~~~~ 137 (368)
T 3mmy_A 129 PVKTIHWIK 137 (368)
T ss_dssp CEEEEEEEE
T ss_pred ceEEEEEEe
Confidence 788888843
No 221
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=94.89 E-value=0.021 Score=53.99 Aligned_cols=59 Identities=17% Similarity=0.102 Sum_probs=36.3
Q ss_pred EEEEEEe----CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 12 VRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 12 v~l~iWD----e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
.+++|.| ..|..-... -+|++|+|.|....--...+.....+.+ .++|.+++.||.|..
T Consensus 67 ~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~----~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 67 TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK----MGIPTIFFINKIDQN 132 (638)
T ss_dssp CBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH----HTCSCEECCEECCSS
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH----cCCCeEEEEeccccc
Confidence 5567788 444332222 7899999999922111112333334444 468999999999975
No 222
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=94.88 E-value=0.07 Score=46.90 Aligned_cols=71 Identities=13% Similarity=0.168 Sum_probs=52.5
Q ss_pred ceEEeecccCc-eeeecccc-----------eeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCce
Q psy14042 145 SAVIVGSVDGN-RIWGKEFK-----------KTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMG 212 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~~-----------~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~ 212 (238)
...+.++.||. ++|.-+-. ...+..+.|+|++..+..|..+|.|++||..|..+..+..+ ..
T Consensus 178 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h------~~ 251 (435)
T 4e54_B 178 NQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMH------KK 251 (435)
T ss_dssp TEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCC------SS
T ss_pred CEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecc------cc
Confidence 35566778887 88853211 01345678999999999999999999999999887766655 44
Q ss_pred eEEEEEeec
Q psy14042 213 EIAALKYYL 221 (238)
Q Consensus 213 ~i~~~~w~~ 221 (238)
+|.++.|..
T Consensus 252 ~v~~v~~~p 260 (435)
T 4e54_B 252 KVTHVALNP 260 (435)
T ss_dssp CEEEEEECT
T ss_pred eEEeeeecC
Confidence 677777764
No 223
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=94.65 E-value=0.15 Score=43.69 Aligned_cols=71 Identities=11% Similarity=0.173 Sum_probs=51.1
Q ss_pred cceEEeecccCc-eeeeccc--------------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCC
Q psy14042 144 ASAVIVGSVDGN-RIWGKEF--------------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGP 207 (238)
Q Consensus 144 ~~~~~~~~~~g~-rv~g~~~--------------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~ 207 (238)
++..+.++.+|. ++|.-+- .. .+..+.|+|+++.+..|..+|.|++||.. |..+..+.-|
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~-~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h--- 168 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDD-IVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH--- 168 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC---
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCC-CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc---
Confidence 355667888888 9995321 11 46788999999999999999999999975 6656555433
Q ss_pred CCCceeEEEEEeec
Q psy14042 208 GSEMGEIAALKYYL 221 (238)
Q Consensus 208 ~~~~~~i~~~~w~~ 221 (238)
..+|.++.|..
T Consensus 169 ---~~~V~~~~~~~ 179 (344)
T 4gqb_B 169 ---AAQVTCVAASP 179 (344)
T ss_dssp ---SSCEEEEEECS
T ss_pred ---CCceEEEEecC
Confidence 33566666654
No 224
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=94.56 E-value=0.077 Score=50.77 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=38.8
Q ss_pred EEEEEEEe----CCCcccc-cC--CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCC
Q psy14042 11 KVRAIIWN----EQYEKLT-SS--DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74 (238)
Q Consensus 11 ~v~l~iWD----e~~~~l~-~~--~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 74 (238)
.+.++|.| -.|..-. .. -+|++|+|.|.-..--...+..+..+.+ .+.|.+++.||+|..
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~----~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK----YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----HTCCEEEEEECSSST
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEcccccc
Confidence 57889999 3443221 22 6899999999932222223334444444 469999999999974
No 225
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=94.55 E-value=0.21 Score=42.81 Aligned_cols=70 Identities=9% Similarity=0.233 Sum_probs=51.3
Q ss_pred eEEeecccCc-eeeecc----------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCcee
Q psy14042 146 AVIVGSVDGN-RIWGKE----------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGE 213 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~----------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~ 213 (238)
..+.++.+|. ++|... ... .+..+.|+|++..+..|..+|.|++||.. |..+..+.-+ ..+
T Consensus 111 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h------~~~ 183 (420)
T 3vl1_A 111 RFILGTTEGDIKVLDSNFNLQREIDQAHVS-EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH------RAT 183 (420)
T ss_dssp EEEEEETTSCEEEECTTSCEEEEETTSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC------SSC
T ss_pred EEEEEECCCCEEEEeCCCcceeeecccccC-ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC------CCc
Confidence 4556677776 777632 222 57788999999999999999999999984 6666665533 456
Q ss_pred EEEEEeecC
Q psy14042 214 IAALKYYLN 222 (238)
Q Consensus 214 i~~~~w~~~ 222 (238)
|.++.|...
T Consensus 184 v~~~~~~~~ 192 (420)
T 3vl1_A 184 VTDIAIIDR 192 (420)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEcCC
Confidence 777877653
No 226
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=94.26 E-value=0.33 Score=39.98 Aligned_cols=70 Identities=21% Similarity=0.332 Sum_probs=49.0
Q ss_pred eEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeE
Q psy14042 146 AVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEI 214 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i 214 (238)
..+.++.+|. ++|...-.+ ..+....|+|++..+..|..+|.|++||.. |..+..+.-+ ...|
T Consensus 37 ~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~------~~~v 110 (312)
T 4ery_A 37 WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH------SNYV 110 (312)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC------SSCE
T ss_pred EEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCC------CCCE
Confidence 4456677787 888643111 146788999999999999999999999985 6656655533 3345
Q ss_pred EEEEeec
Q psy14042 215 AALKYYL 221 (238)
Q Consensus 215 ~~~~w~~ 221 (238)
.++.|..
T Consensus 111 ~~~~~~~ 117 (312)
T 4ery_A 111 FCCNFNP 117 (312)
T ss_dssp EEEEECS
T ss_pred EEEEEcC
Confidence 6666654
No 227
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=94.24 E-value=0.37 Score=40.62 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=53.5
Q ss_pred ceEEeecccCc-eeeecccce-----------eeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCc
Q psy14042 145 SAVIVGSVDGN-RIWGKEFKK-----------TSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEM 211 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~~~-----------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~ 211 (238)
...+.++.+|. ++|...-.+ ..+..+.|+|++..+..|..+|.|++||. .|..+..+.-| .
T Consensus 239 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h------~ 312 (340)
T 1got_B 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH------D 312 (340)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC------S
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecC------C
Confidence 34567788887 899754221 13567899999999999999999999997 46666555433 4
Q ss_pred eeEEEEEeecCC
Q psy14042 212 GEIAALKYYLNR 223 (238)
Q Consensus 212 ~~i~~~~w~~~~ 223 (238)
.+|.++.|..+.
T Consensus 313 ~~v~~~~~s~dg 324 (340)
T 1got_B 313 NRVSCLGVTDDG 324 (340)
T ss_dssp SCEEEEEECTTS
T ss_pred CcEEEEEEcCCC
Confidence 578889887543
No 228
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=94.09 E-value=0.24 Score=41.49 Aligned_cols=57 Identities=11% Similarity=0.312 Sum_probs=42.7
Q ss_pred eEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeee
Q psy14042 146 AVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVS 202 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~ 202 (238)
..+.++.||. ++|.-.-.+ ..+..+.|+|++..+..|..+|.|++||..|..+..+.
T Consensus 79 ~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~ 145 (319)
T 3frx_A 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL 145 (319)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEEC
T ss_pred EEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3455677776 787643211 25677899999999999999999999999987665543
No 229
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.04 E-value=0.18 Score=42.55 Aligned_cols=72 Identities=17% Similarity=0.152 Sum_probs=49.1
Q ss_pred eEEeecccCc-eeeecccce----------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCee-eeeeeecCCCCCce
Q psy14042 146 AVIVGSVDGN-RIWGKEFKK----------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFM-NKVSMWSGPGSEMG 212 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~~----------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~-~~~~~~~~~~~~~~ 212 (238)
..+.++.+|. ++|.-+-.+ ..+..+.|+|++..+..|..+|.|++||.. |..+ ..+.. ....
T Consensus 141 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~-----~h~~ 215 (343)
T 3lrv_A 141 YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV-----DEEA 215 (343)
T ss_dssp EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-----CTTS
T ss_pred EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-----cCCC
Confidence 4455677777 777633211 146678999999999999999999999986 4433 34433 1145
Q ss_pred eEEEEEeecC
Q psy14042 213 EIAALKYYLN 222 (238)
Q Consensus 213 ~i~~~~w~~~ 222 (238)
+|.++.|..+
T Consensus 216 ~v~~l~fs~~ 225 (343)
T 3lrv_A 216 KIKEVKFADN 225 (343)
T ss_dssp CEEEEEECTT
T ss_pred CEEEEEEeCC
Confidence 7778887654
No 230
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=93.93 E-value=0.38 Score=41.02 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=53.2
Q ss_pred eEEeecccCc-eeeecccce-----------eeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCce
Q psy14042 146 AVIVGSVDGN-RIWGKEFKK-----------TSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMG 212 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~~-----------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~ 212 (238)
..+.++.||. |+|.-.-.+ ..+..+.|+|++..+..|..+|.|++||. .|..+..+.-| ..
T Consensus 254 ~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h------~~ 327 (354)
T 2pbi_B 254 AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH------EN 327 (354)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC------SS
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC------CC
Confidence 4567788888 999743221 13457899999999999999999999997 57766554433 45
Q ss_pred eEEEEEeecCC
Q psy14042 213 EIAALKYYLNR 223 (238)
Q Consensus 213 ~i~~~~w~~~~ 223 (238)
+|.++.|....
T Consensus 328 ~v~~l~~spdg 338 (354)
T 2pbi_B 328 RVSTLRVSPDG 338 (354)
T ss_dssp CEEEEEECTTS
T ss_pred cEEEEEECCCC
Confidence 78899987643
No 231
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=93.91 E-value=0.14 Score=46.17 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=41.8
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeec
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYL 221 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~ 221 (238)
.+..+.|+||++.+..|..+|.|+|||..|..+..+.-| ..+|.+|.|..
T Consensus 18 ~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh------~~~V~~l~fsp 67 (577)
T 2ymu_A 18 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH------SSSVWGVAFSP 67 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECC------SSCEEEEEECT
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCC------CCCEEEEEECC
Confidence 788999999999999999999999999999888776654 34567777654
No 232
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=93.83 E-value=0.4 Score=40.43 Aligned_cols=72 Identities=14% Similarity=0.298 Sum_probs=49.8
Q ss_pred cceEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCce
Q psy14042 144 ASAVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMG 212 (238)
Q Consensus 144 ~~~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~ 212 (238)
.+..+.++.+|. ++|..+-.+ ..+..+.|+|++..+..|..+|.|++||.. |..+..+.-+ ..
T Consensus 154 ~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h------~~ 227 (340)
T 1got_B 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH------ES 227 (340)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC------SS
T ss_pred CCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC------cC
Confidence 344566777887 888643211 156778999999999999999999999974 5555544433 33
Q ss_pred eEEEEEeec
Q psy14042 213 EIAALKYYL 221 (238)
Q Consensus 213 ~i~~~~w~~ 221 (238)
+|.++.|..
T Consensus 228 ~v~~v~~~p 236 (340)
T 1got_B 228 DINAICFFP 236 (340)
T ss_dssp CEEEEEECT
T ss_pred CEEEEEEcC
Confidence 566666654
No 233
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=93.78 E-value=0.31 Score=42.47 Aligned_cols=72 Identities=17% Similarity=0.314 Sum_probs=54.1
Q ss_pred eEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeE
Q psy14042 146 AVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEI 214 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i 214 (238)
+.+.++.+|. ++|...-.. ..+..+.|+|++..+.-|..+|.|++||.. |..+..+.-| ...|
T Consensus 310 ~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h------~~~v 383 (410)
T 1vyh_C 310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH------EHFV 383 (410)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC------SSCE
T ss_pred EEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC------CCcE
Confidence 5667888887 888643211 146788999999999999999999999985 5556665544 4578
Q ss_pred EEEEeecCC
Q psy14042 215 AALKYYLNR 223 (238)
Q Consensus 215 ~~~~w~~~~ 223 (238)
.++.|....
T Consensus 384 ~~l~~~~~~ 392 (410)
T 1vyh_C 384 TSLDFHKTA 392 (410)
T ss_dssp EEEEECSSS
T ss_pred EEEEEcCCC
Confidence 999997654
No 234
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=93.72 E-value=0.42 Score=40.28 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=50.1
Q ss_pred eEEeecccCc-eeeeccc-----------------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecC
Q psy14042 146 AVIVGSVDGN-RIWGKEF-----------------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSG 206 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~-----------------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~ 206 (238)
..+.++.||. ++|...- .. .+..+.|+|++..+.-|..+|.|++||.. |..+..+.-+
T Consensus 41 ~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~-~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h-- 117 (343)
T 2xzm_R 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH-FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH-- 117 (343)
T ss_dssp EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSS-CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC--
T ss_pred EEEEEcCCCEEEEEECCcCCcccccccccchhccCCC-ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC--
Confidence 4567788887 8886421 11 46788999999999999999999999974 6666555433
Q ss_pred CCCCceeEEEEEeec
Q psy14042 207 PGSEMGEIAALKYYL 221 (238)
Q Consensus 207 ~~~~~~~i~~~~w~~ 221 (238)
..+|.++.|..
T Consensus 118 ----~~~v~~v~~sp 128 (343)
T 2xzm_R 118 ----QSEVYSVAFSP 128 (343)
T ss_dssp ----CSCEEEEEECS
T ss_pred ----CCcEEEEEECC
Confidence 34566666654
No 235
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=93.66 E-value=0.37 Score=40.49 Aligned_cols=72 Identities=17% Similarity=0.279 Sum_probs=52.7
Q ss_pred eEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeE
Q psy14042 146 AVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEI 214 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i 214 (238)
..+.++.+|. ++|...-.. ..+..+.|+|++..+..|..+|.|++||.. |..+..+.-+ ..+|
T Consensus 220 ~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h------~~~v 293 (321)
T 3ow8_A 220 LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH------QDQV 293 (321)
T ss_dssp EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC------SSCE
T ss_pred EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC------CCcE
Confidence 4567788887 888643211 146788999999999999999999999985 5555544333 4578
Q ss_pred EEEEeecCC
Q psy14042 215 AALKYYLNR 223 (238)
Q Consensus 215 ~~~~w~~~~ 223 (238)
.++.|..+.
T Consensus 294 ~~v~~s~~g 302 (321)
T 3ow8_A 294 WGVKYNGNG 302 (321)
T ss_dssp EEEEECTTS
T ss_pred EEEEECCCC
Confidence 899997643
No 236
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=93.58 E-value=0.38 Score=40.83 Aligned_cols=73 Identities=18% Similarity=0.323 Sum_probs=53.0
Q ss_pred eEEeecccCc-eeeecc------------cceeeeEEEEeCC-CCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCc
Q psy14042 146 AVIVGSVDGN-RIWGKE------------FKKTSMLGVQWTS-DSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEM 211 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~------------~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~ 211 (238)
..+.++.+|. ++|... ... .+..+.|+| ++..+..|..+|.|++||..|..+..+..+. ...
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~~ 163 (383)
T 3ei3_B 88 TVAVGSKGGDIILWDYDVQNKTSFIQGMGPGD-AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTD---SWD 163 (383)
T ss_dssp EEEEEEBTSCEEEEETTSTTCEEEECCCSTTC-BEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCC---CSS
T ss_pred EEEEEcCCCeEEEEeCCCcccceeeecCCcCC-ceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccC---CCC
Confidence 5667777887 888654 232 677889999 7799999999999999999986665554331 123
Q ss_pred eeEEEEEeecC
Q psy14042 212 GEIAALKYYLN 222 (238)
Q Consensus 212 ~~i~~~~w~~~ 222 (238)
..|.++.|...
T Consensus 164 ~~v~~~~~~~~ 174 (383)
T 3ei3_B 164 YWYCCVDVSVS 174 (383)
T ss_dssp CCEEEEEEETT
T ss_pred CCeEEEEECCC
Confidence 56777777654
No 237
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=93.53 E-value=0.21 Score=41.57 Aligned_cols=51 Identities=12% Similarity=0.179 Sum_probs=41.5
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
.+..+.|+|++..+..|..+|.|++||. .|..+..+.-+ ..+|.++.|...
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h------~~~v~~~~~~~~ 85 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGH------TGTIWSIDVDCF 85 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCC------SSCEEEEEECTT
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhc------CCcEEEEEEcCC
Confidence 7888999999999999999999999996 56666665543 456888888753
No 238
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=93.46 E-value=0.46 Score=39.71 Aligned_cols=70 Identities=14% Similarity=0.172 Sum_probs=49.6
Q ss_pred ceEEeecccCc-eeeecc---------c------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCC
Q psy14042 145 SAVIVGSVDGN-RIWGKE---------F------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGP 207 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~---------~------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~ 207 (238)
...+.++.||. ++|... + .. .+..+.|+|++..+.-|..+|.|++||.. |..+..+.-+
T Consensus 31 ~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h--- 106 (319)
T 3frx_A 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH-IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH--- 106 (319)
T ss_dssp TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC---
T ss_pred cEEEEecCCccEEEecCCCCCccccccceEEeCCcc-cEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccC---
Confidence 35567788887 888432 1 22 56678999999999999999999999974 6666555433
Q ss_pred CCCceeEEEEEeec
Q psy14042 208 GSEMGEIAALKYYL 221 (238)
Q Consensus 208 ~~~~~~i~~~~w~~ 221 (238)
..+|.++.|..
T Consensus 107 ---~~~v~~~~~~~ 117 (319)
T 3frx_A 107 ---KSDVMSVDIDK 117 (319)
T ss_dssp ---SSCEEEEEECT
T ss_pred ---CCcEEEEEEcC
Confidence 33566666644
No 239
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=93.36 E-value=0.55 Score=38.03 Aligned_cols=73 Identities=11% Similarity=0.142 Sum_probs=51.9
Q ss_pred cceEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCce
Q psy14042 144 ASAVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMG 212 (238)
Q Consensus 144 ~~~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~ 212 (238)
.+..+.+..+|. ++|...-.+ ..+....|+|++ .+..|..+|.|++||. .|..+..+..+ ..
T Consensus 195 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~------~~ 267 (313)
T 3odt_A 195 DGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP------AI 267 (313)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS------SS
T ss_pred CCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc------Cc
Confidence 344566777777 787644211 146678899998 6889999999999996 57767666654 34
Q ss_pred eEEEEEeecCC
Q psy14042 213 EIAALKYYLNR 223 (238)
Q Consensus 213 ~i~~~~w~~~~ 223 (238)
+|.++.|....
T Consensus 268 ~i~~~~~~~~~ 278 (313)
T 3odt_A 268 SIWSVDCMSNG 278 (313)
T ss_dssp CEEEEEECTTS
T ss_pred eEEEEEEccCC
Confidence 68888886643
No 240
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=93.29 E-value=0.36 Score=41.62 Aligned_cols=67 Identities=21% Similarity=0.459 Sum_probs=48.9
Q ss_pred eEEeecccCc-eeeeccc-----------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCce
Q psy14042 146 AVIVGSVDGN-RIWGKEF-----------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMG 212 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~-----------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~ 212 (238)
..+.+..+|. ++|...- . ..+..+.|+|++..+..|..+|.|++||.. |..+..+.-+ ..
T Consensus 105 ~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~ 177 (401)
T 4aez_A 105 NVVAVALERNVYVWNADSGSVSALAETDES-TYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGH------QA 177 (401)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEECCTT-CCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC------SS
T ss_pred CEEEEECCCeEEEeeCCCCcEeEeeecCCC-CCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCC------CC
Confidence 3445566666 7775431 2 257788999999999999999999999975 6656655433 45
Q ss_pred eEEEEEe
Q psy14042 213 EIAALKY 219 (238)
Q Consensus 213 ~i~~~~w 219 (238)
+|.++.|
T Consensus 178 ~v~~~~~ 184 (401)
T 4aez_A 178 RVGCLSW 184 (401)
T ss_dssp CEEEEEE
T ss_pred ceEEEEE
Confidence 6888888
No 241
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=93.28 E-value=0.42 Score=40.46 Aligned_cols=73 Identities=18% Similarity=0.292 Sum_probs=48.2
Q ss_pred eEEeecccCc-eeeecccc------------eeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCC-eeeeeeeecCCCCCc
Q psy14042 146 AVIVGSVDGN-RIWGKEFK------------KTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGN-FMNKVSMWSGPGSEM 211 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~------------~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~-~~~~~~~~~~~~~~~ 211 (238)
..+.++.||. ++|..+-. ...+..+.|+|++..+..|..+|.|.+||.... +.....+. + ..
T Consensus 30 ~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~---~-h~ 105 (345)
T 3fm0_A 30 LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE---G-HE 105 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC---C-CS
T ss_pred EEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc---C-CC
Confidence 4456677887 88854311 015778899999999999999999999997543 22111111 1 13
Q ss_pred eeEEEEEeecC
Q psy14042 212 GEIAALKYYLN 222 (238)
Q Consensus 212 ~~i~~~~w~~~ 222 (238)
.+|.++.|...
T Consensus 106 ~~v~~v~~sp~ 116 (345)
T 3fm0_A 106 NEVKSVAWAPS 116 (345)
T ss_dssp SCEEEEEECTT
T ss_pred CCceEEEEeCC
Confidence 46777777653
No 242
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=93.27 E-value=0.21 Score=42.28 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=35.5
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCC-e----eeeeeeecCCCCCceeEEEEEeec
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGN-F----MNKVSMWSGPGSEMGEIAALKYYL 221 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~-~----~~~~~~~~~~~~~~~~i~~~~w~~ 221 (238)
.+..+.|+|++..+..|..+|.|++||.... . +..+.-+ ..+|.++.|..
T Consensus 207 ~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------~~~v~~~~~s~ 261 (377)
T 3dwl_C 207 WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS------QLPLRSLLWAN 261 (377)
T ss_dssp SEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS------SSCEEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC------CCceEEEEEcC
Confidence 4778899999999999999999999998643 3 3333332 33566666654
No 243
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=93.26 E-value=0.66 Score=43.26 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=50.1
Q ss_pred ceEEeecccCc-eeeecc---------------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCC
Q psy14042 145 SAVIVGSVDGN-RIWGKE---------------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGP 207 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~---------------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~ 207 (238)
...+.++.||. ++|.-. ... .+..+.|+|++..+..|..+|.|+|||.. |..+..+.-|
T Consensus 396 ~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~-~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h--- 471 (694)
T 3dm0_A 396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH-FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGH--- 471 (694)
T ss_dssp SEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC---
T ss_pred CEEEEEeCCCcEEEEEccCCCcccccccceecCCCC-cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCC---
Confidence 35667888998 999532 112 46788999999999999999999999975 5555544433
Q ss_pred CCCceeEEEEEeec
Q psy14042 208 GSEMGEIAALKYYL 221 (238)
Q Consensus 208 ~~~~~~i~~~~w~~ 221 (238)
..+|.++.|..
T Consensus 472 ---~~~v~~~~~s~ 482 (694)
T 3dm0_A 472 ---TKDVLSVAFSL 482 (694)
T ss_dssp ---SSCEEEEEECT
T ss_pred ---CCCEEEEEEeC
Confidence 33566666654
No 244
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=93.17 E-value=0.47 Score=40.18 Aligned_cols=58 Identities=10% Similarity=0.169 Sum_probs=45.2
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCC---------------ceeEEEEEeecCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSE---------------MGEIAALKYYLNR 223 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~---------------~~~i~~~~w~~~~ 223 (238)
.+..+.|+|++..+..|..+|.|++||.. |..+..+..++..... ..+|.++.|....
T Consensus 293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g 366 (397)
T 1sq9_A 293 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG 366 (397)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence 57788999999999999999999999984 6667776643322122 5689999998764
No 245
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=93.16 E-value=0.31 Score=40.33 Aligned_cols=71 Identities=13% Similarity=0.220 Sum_probs=49.5
Q ss_pred eEEeecccCc-eeeeccc-------------ceeeeEEEEeCCCCC-eEEEEeeCceEEEEeC-CCCeeeeeeeecCCCC
Q psy14042 146 AVIVGSVDGN-RIWGKEF-------------KKTSMLGVQWTSDSQ-NLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGS 209 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~-------------~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~ 209 (238)
..++++.+|. ++|...- .. .+..+.|+|++. .+..|..+|.|++||. .+.....+.-. .
T Consensus 25 ~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~ 99 (342)
T 1yfq_A 25 LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH-PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNN----E 99 (342)
T ss_dssp EEEEEETTSEEEEEEEETTTTEEEEEEEEECSS-CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSC----C
T ss_pred EEEEEcCCCeEEEEEeCCCCccccceeeeecCC-ceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEecccc----C
Confidence 3445566665 6665321 22 567889999999 9999999999999998 76655444330 0
Q ss_pred CceeEEEEEeec
Q psy14042 210 EMGEIAALKYYL 221 (238)
Q Consensus 210 ~~~~i~~~~w~~ 221 (238)
...+|.++.|..
T Consensus 100 ~~~~v~~l~~~~ 111 (342)
T 1yfq_A 100 ANLGICRICKYG 111 (342)
T ss_dssp CCSCEEEEEEET
T ss_pred CCCceEEEEeCC
Confidence 245788888876
No 246
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=93.14 E-value=0.48 Score=39.80 Aligned_cols=47 Identities=28% Similarity=0.577 Sum_probs=35.8
Q ss_pred eEEeecccCc-eeeecc-----------------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeC
Q psy14042 146 AVIVGSVDGN-RIWGKE-----------------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDY 193 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~-----------------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~ 193 (238)
..+.++.+|. ++|..+ -.. .+..+.|+|++..+..|..+|.|++||.
T Consensus 72 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~sp~g~~las~s~D~~v~iwd~ 136 (330)
T 2hes_X 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHEN-EVKGVAWSNDGYYLATCSRDKSVWIWET 136 (330)
T ss_dssp EEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCC-cEEEEEECCCCCEEEEEeCCCEEEEEec
Confidence 3456667776 888541 122 5778899999999999999999999998
No 247
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=93.10 E-value=0.53 Score=39.27 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=41.6
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
.+....|+|++..+..|..+|.|++||. .|..+..+..+ ..+|.++.|...
T Consensus 204 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~ 255 (372)
T 1k8k_C 204 WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE------TLPLLAVTFITE 255 (372)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS------SCCEEEEEEEET
T ss_pred eEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC------CCCeEEEEEecC
Confidence 5778899999999999999999999999 57777666544 446888888754
No 248
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=93.03 E-value=0.45 Score=39.43 Aligned_cols=70 Identities=11% Similarity=0.224 Sum_probs=49.4
Q ss_pred eEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeE
Q psy14042 146 AVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEI 214 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i 214 (238)
..+.++.+|. ++|.-+-.. ..+....|+|+++.+..|..+|.|++||.. |..+..+.-+ ...|
T Consensus 27 ~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h------~~~v 100 (304)
T 2ynn_A 27 WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH------PDYI 100 (304)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECC------SSCE
T ss_pred EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCC------CCcE
Confidence 4456677887 888643211 146678899999999999999999999975 6666655544 3345
Q ss_pred EEEEeec
Q psy14042 215 AALKYYL 221 (238)
Q Consensus 215 ~~~~w~~ 221 (238)
-++.|..
T Consensus 101 ~~~~~~~ 107 (304)
T 2ynn_A 101 RSIAVHP 107 (304)
T ss_dssp EEEEECS
T ss_pred EEEEEcC
Confidence 5666654
No 249
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=93.00 E-value=0.5 Score=40.40 Aligned_cols=69 Identities=9% Similarity=0.116 Sum_probs=48.9
Q ss_pred eEEeecccCc-eeeecc----c------ceeeeEEEEeCCCC-CeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCcee
Q psy14042 146 AVIVGSVDGN-RIWGKE----F------KKTSMLGVQWTSDS-QNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGE 213 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~----~------~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~ 213 (238)
+.+.++.+|. ++|..+ + .. .+..+.|+|++ .++.-|..+|.|+|||.....+.++.-| ...
T Consensus 229 ~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H------~~~ 301 (344)
T 4gqb_B 229 VFVFGDENGTVSLVDTKSTSCVLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAH------RDF 301 (344)
T ss_dssp EEEEEETTSEEEEEESCC--CCEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCC------SSC
T ss_pred ceEEeccCCcEEEEECCCCcEEEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCC------CCC
Confidence 4456778887 888532 1 22 57788999998 4677899999999999976655444322 446
Q ss_pred EEEEEeec
Q psy14042 214 IAALKYYL 221 (238)
Q Consensus 214 i~~~~w~~ 221 (238)
|.++.|..
T Consensus 302 V~~v~~sp 309 (344)
T 4gqb_B 302 VRDATWSP 309 (344)
T ss_dssp EEEEEECS
T ss_pred EEEEEEeC
Confidence 88888864
No 250
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=92.94 E-value=0.38 Score=39.26 Aligned_cols=70 Identities=16% Similarity=0.284 Sum_probs=48.3
Q ss_pred eEEeecccCc-eeeecc--------------cceeeeEEEEeCC--CCCeEEEEeeCceEEEEeCCCC----------ee
Q psy14042 146 AVIVGSVDGN-RIWGKE--------------FKKTSMLGVQWTS--DSQNLLFAIKGGQVHLYDYEGN----------FM 198 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~--------------~~~~~~~~~~~~~--~~~~~~~g~~~g~~~~~d~~g~----------~~ 198 (238)
..+.++.+|. ++|.-. .. ..+..+.|+| ++..+..|..+|.|++||.... .+
T Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 103 (351)
T 3f3f_A 25 HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHD-SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKL 103 (351)
T ss_dssp EEEEEETTSEEEEEEECSSSCCEEEEEEEECCS-SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEE
T ss_pred EEEEeeCCCeEEEEECCCCCCcceecceeccCC-CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCccee
Confidence 4456677776 888532 12 2578889999 5899999999999999998653 22
Q ss_pred eeeeeecCCCCCceeEEEEEeecC
Q psy14042 199 NKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 199 ~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
..+.-+ ..+|.++.|...
T Consensus 104 ~~~~~~------~~~v~~~~~~~~ 121 (351)
T 3f3f_A 104 CTLNDS------KGSLYSVKFAPA 121 (351)
T ss_dssp EEECCC------SSCEEEEEECCG
T ss_pred eeeccc------CCceeEEEEcCC
Confidence 222222 456777877764
No 251
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=92.88 E-value=0.55 Score=38.85 Aligned_cols=71 Identities=10% Similarity=0.138 Sum_probs=51.9
Q ss_pred eEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeE
Q psy14042 146 AVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEI 214 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i 214 (238)
..+.++.+|. ++|.-+-.+ ..+....|+|++..+..|..+|.|++||.. |..+..+..+ ...+
T Consensus 200 ~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~------~~~~ 273 (304)
T 2ynn_A 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG------LERS 273 (304)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS------SSSE
T ss_pred EEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC------CccE
Confidence 4567788888 999644221 145677899999999999999999999985 6666665543 3456
Q ss_pred EEEEeecC
Q psy14042 215 AALKYYLN 222 (238)
Q Consensus 215 ~~~~w~~~ 222 (238)
.++.|+..
T Consensus 274 ~~~~~~~~ 281 (304)
T 2ynn_A 274 WCIATHPT 281 (304)
T ss_dssp EEEEECTT
T ss_pred EEEEECCC
Confidence 77777654
No 252
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=92.88 E-value=0.42 Score=40.19 Aligned_cols=70 Identities=20% Similarity=0.373 Sum_probs=47.0
Q ss_pred eEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeE
Q psy14042 146 AVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEI 214 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i 214 (238)
..+.++.+|. ++|.-+-.+ ..+..+.|+|+++.+..|..+|.|++||.. |..+..+.-+ ..+|
T Consensus 136 ~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h------~~~v 209 (321)
T 3ow8_A 136 YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH------AMPI 209 (321)
T ss_dssp EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC------SSCC
T ss_pred EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc------CCce
Confidence 3445566666 666543211 146778999999999999999999999975 6555555433 3345
Q ss_pred EEEEeec
Q psy14042 215 AALKYYL 221 (238)
Q Consensus 215 ~~~~w~~ 221 (238)
-++.|..
T Consensus 210 ~~l~~sp 216 (321)
T 3ow8_A 210 RSLTFSP 216 (321)
T ss_dssp CEEEECT
T ss_pred eEEEEcC
Confidence 5566644
No 253
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=92.83 E-value=0.47 Score=40.53 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=48.4
Q ss_pred cceEEeecccCc-eeeeccc--------------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCC
Q psy14042 144 ASAVIVGSVDGN-RIWGKEF--------------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGP 207 (238)
Q Consensus 144 ~~~~~~~~~~g~-rv~g~~~--------------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~ 207 (238)
++..++++.+|. ++|.-.- .. .+..+.|+|++..+..|..+|.|++||.. |..+..+..+
T Consensus 105 d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h--- 180 (357)
T 4g56_B 105 EKGILVASDSGAVELWEILEKESLLVNKFAKYEHDD-IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH--- 180 (357)
T ss_dssp TTEEEEEETTSCEEEC--------CCCCEEECCCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCC---
T ss_pred CCCEEEEECCCEEEEeeccccceeEEEeeccCCCCC-CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC---
Confidence 344556777787 8884211 22 57788999999999999999999999985 5556555443
Q ss_pred CCCceeEEEEEeec
Q psy14042 208 GSEMGEIAALKYYL 221 (238)
Q Consensus 208 ~~~~~~i~~~~w~~ 221 (238)
...|-++.|..
T Consensus 181 ---~~~v~~v~~s~ 191 (357)
T 4g56_B 181 ---SSEVNCVAACP 191 (357)
T ss_dssp ---SSCEEEEEECT
T ss_pred ---CCCEEEEEEcc
Confidence 33455566543
No 254
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=92.77 E-value=0.24 Score=43.12 Aligned_cols=69 Identities=14% Similarity=0.360 Sum_probs=47.8
Q ss_pred ceEEeecccCc-eeeecccc-----------eeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCc
Q psy14042 145 SAVIVGSVDGN-RIWGKEFK-----------KTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEM 211 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~~-----------~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~ 211 (238)
.+..++. ++. ++|...-. ...+..+.|+|++..+..|+.+|.|++||.. |..+..+.-+ .
T Consensus 117 n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h------~ 189 (420)
T 4gga_A 117 NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH------S 189 (420)
T ss_dssp SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC------S
T ss_pred CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCC------C
Confidence 3445554 555 88864311 1147889999999999999999999999985 6656555443 3
Q ss_pred eeEEEEEee
Q psy14042 212 GEIAALKYY 220 (238)
Q Consensus 212 ~~i~~~~w~ 220 (238)
..+.++.|.
T Consensus 190 ~~v~~~s~~ 198 (420)
T 4gga_A 190 ARVGSLSWN 198 (420)
T ss_dssp SCEEEEEEE
T ss_pred CceEEEeeC
Confidence 456666664
No 255
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=92.77 E-value=0.47 Score=40.92 Aligned_cols=71 Identities=21% Similarity=0.313 Sum_probs=52.0
Q ss_pred eEEeecccCc-eeeeccc----------------------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeee
Q psy14042 146 AVIVGSVDGN-RIWGKEF----------------------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKV 201 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~----------------------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~ 201 (238)
..+.++.+|. ++|.-.- .. .+..+.|++++..+..|..+|.|++||.. |..+..+
T Consensus 270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l 348 (393)
T 1erj_A 270 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML 348 (393)
T ss_dssp EEEEEETTSEEEEEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE
Confidence 4566778887 8885321 11 36678999999999999999999999974 7666655
Q ss_pred eeecCCCCCceeEEEEEeecCC
Q psy14042 202 SMWSGPGSEMGEIAALKYYLNR 223 (238)
Q Consensus 202 ~~~~~~~~~~~~i~~~~w~~~~ 223 (238)
.-| ...|.++.|..+.
T Consensus 349 ~~h------~~~v~~v~~~~~~ 364 (393)
T 1erj_A 349 QGH------RNSVISVAVANGS 364 (393)
T ss_dssp ECC------SSCEEEEEECSSC
T ss_pred CCC------CCCEEEEEecCCc
Confidence 544 4568888887643
No 256
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=92.73 E-value=0.61 Score=39.14 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=37.1
Q ss_pred eEEeecccCc-eeeeccc-------------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC
Q psy14042 146 AVIVGSVDGN-RIWGKEF-------------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE 194 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~-------------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~ 194 (238)
..+.++.||. ++|...- ....+..+.|+|++..+..|..+|.|++||..
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~ 88 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE 88 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcc
Confidence 5566777877 7774321 01157788999999999999999999999984
No 257
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=92.47 E-value=0.39 Score=41.27 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=51.4
Q ss_pred eEEeecccCc-eeeecccce----------------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCC
Q psy14042 146 AVIVGSVDGN-RIWGKEFKK----------------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGP 207 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~~----------------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~ 207 (238)
..+.++.||. ++|...-.. ..+..+.|+|++..+..|..+|.|++||.. |..+..+.. ..
T Consensus 263 ~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~--~~ 340 (380)
T 3iz6_a 263 RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT--LQ 340 (380)
T ss_dssp EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC--SC
T ss_pred eEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec--cc
Confidence 4567788888 999754321 015678999999999999999999999974 555544421 11
Q ss_pred CCCceeEEEEEeecC
Q psy14042 208 GSEMGEIAALKYYLN 222 (238)
Q Consensus 208 ~~~~~~i~~~~w~~~ 222 (238)
......|.++.|...
T Consensus 341 ~~h~~~v~~l~~s~d 355 (380)
T 3iz6_a 341 NSHEGRISCLGLSSD 355 (380)
T ss_dssp SSCCCCCCEEEECSS
T ss_pred CCCCCceEEEEECCC
Confidence 222456777877654
No 258
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=92.36 E-value=0.75 Score=37.57 Aligned_cols=71 Identities=11% Similarity=0.255 Sum_probs=48.9
Q ss_pred eEEeecccCc-eeeecccce--------eeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEE
Q psy14042 146 AVIVGSVDGN-RIWGKEFKK--------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAA 216 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~~--------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~ 216 (238)
..+.++.+|. ++|..+-.+ ..+....|+|++..+..|+.+|.|++||..+.....+.-+ ..+|.+
T Consensus 197 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~------~~~v~~ 270 (337)
T 1gxr_A 197 KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH------ESCVLS 270 (337)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCC------SSCEEE
T ss_pred EEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCC------ccceeE
Confidence 3445566666 676543211 1467789999999999999999999999987654433322 446777
Q ss_pred EEeecC
Q psy14042 217 LKYYLN 222 (238)
Q Consensus 217 ~~w~~~ 222 (238)
+.|...
T Consensus 271 ~~~~~~ 276 (337)
T 1gxr_A 271 LKFAYC 276 (337)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 777653
No 259
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=92.28 E-value=0.86 Score=38.36 Aligned_cols=48 Identities=21% Similarity=0.407 Sum_probs=39.0
Q ss_pred eEEeecccCc-eeeecc--------------------------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC
Q psy14042 146 AVIVGSVDGN-RIWGKE--------------------------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE 194 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~--------------------------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~ 194 (238)
+.+.+..+|. ++|... .. ..+....|+|++..+..|..+|.|++||..
T Consensus 201 ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 275 (408)
T 4a11_B 201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHN-GKVNGLCFTSDGLHLLTVGTDNRMRLWNSS 275 (408)
T ss_dssp EEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCS-SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEEcCCCcEEEEECCCCCcccccccccccccceeecccccccc-CceeEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 4567778887 888642 23 268889999999999999999999999975
No 260
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=92.10 E-value=0.99 Score=37.90 Aligned_cols=69 Identities=6% Similarity=0.112 Sum_probs=47.2
Q ss_pred eEEeecccCc-eeeecc------------cceeeeEEEEeCCCC----------CeEEEEeeCceEEEEeCCCCeeeeee
Q psy14042 146 AVIVGSVDGN-RIWGKE------------FKKTSMLGVQWTSDS----------QNLLFAIKGGQVHLYDYEGNFMNKVS 202 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~------------~~~~~~~~~~~~~~~----------~~~~~g~~~g~~~~~d~~g~~~~~~~ 202 (238)
..+.++.+|. ++|.-. ... .+..+.|+|++ ..+..|..+|.|++||..+.....+.
T Consensus 132 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 210 (343)
T 2xzm_R 132 QILSAGAEREIKLWNILGECKFSSAEKENHSD-WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFK 210 (343)
T ss_dssp EEEEEETTSCEEEEESSSCEEEECCTTTSCSS-CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEE
T ss_pred EEEEEcCCCEEEEEeccCCceeeeecccCCCc-eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEc
Confidence 4456677887 888642 222 57788999987 67889999999999997766554443
Q ss_pred eecCCCCCceeEEEEEeec
Q psy14042 203 MWSGPGSEMGEIAALKYYL 221 (238)
Q Consensus 203 ~~~~~~~~~~~i~~~~w~~ 221 (238)
-+ ..+|.++.|..
T Consensus 211 ~h------~~~v~~~~~s~ 223 (343)
T 2xzm_R 211 AH------ESNVNHLSISP 223 (343)
T ss_dssp CC------SSCEEEEEECT
T ss_pred Cc------cccceEEEECC
Confidence 33 23455666644
No 261
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.05 E-value=0.3 Score=45.95 Aligned_cols=51 Identities=14% Similarity=0.289 Sum_probs=42.1
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
.+..+.|+|++..+..|..+|.|+|||. .|..+..+..+ ..+|.++.|...
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~ 66 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVT------ETPVRAGKFIAR 66 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC------SSCEEEEEEEGG
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecC------CCcEEEEEEeCC
Confidence 7888999999999999999999999995 57677766644 456888888764
No 262
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.02 E-value=0.53 Score=44.23 Aligned_cols=71 Identities=13% Similarity=0.243 Sum_probs=50.6
Q ss_pred eEEeecccCc-eeeecc----------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCcee
Q psy14042 146 AVIVGSVDGN-RIWGKE----------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMGE 213 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~----------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~~ 213 (238)
..+++..+|. ++|.-. .. ..+....|+|++..+..|..+|.|++||. .|..+..+.-+ ..+
T Consensus 27 ~la~~~~~g~v~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~------~~~ 99 (814)
T 3mkq_A 27 WVLTTLYSGRVEIWNYETQVEVRSIQVTE-TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH------PDY 99 (814)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCS-SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECC------SSC
T ss_pred EEEEEeCCCEEEEEECCCCceEEEEecCC-CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecC------CCC
Confidence 3445556665 666532 12 25778899999999999999999999996 47666666544 446
Q ss_pred EEEEEeecCC
Q psy14042 214 IAALKYYLNR 223 (238)
Q Consensus 214 i~~~~w~~~~ 223 (238)
|.++.|....
T Consensus 100 v~~~~~s~~~ 109 (814)
T 3mkq_A 100 IRSIAVHPTK 109 (814)
T ss_dssp EEEEEECSSS
T ss_pred EEEEEEeCCC
Confidence 7888886543
No 263
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=91.95 E-value=0.45 Score=39.16 Aligned_cols=51 Identities=12% Similarity=0.201 Sum_probs=40.1
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
.+..+.|+|++..+..|..+|.|++||.. |.+...+.-+ ..+|.++.|...
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h------~~~v~~~~~~~~ 76 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGISDVAWSSD 76 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC------SSCEEEEEECTT
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccC------CCceEEEEEcCC
Confidence 67889999999999999999999999984 6666555433 446777777653
No 264
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=91.92 E-value=0.41 Score=39.05 Aligned_cols=50 Identities=6% Similarity=0.131 Sum_probs=38.5
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCC-----eeeeeeeecCCCCCceeEEEEEeec
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGN-----FMNKVSMWSGPGSEMGEIAALKYYL 221 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~-----~~~~~~~~~~~~~~~~~i~~~~w~~ 221 (238)
.+..+.|+|++..+..|..+|.|++||.... .+..+.-+ ..+|.++.|..
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~ 67 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAH------DSSIVAIDWAS 67 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECC------SSCEEEEEECC
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccC------CCcEEEEEEcC
Confidence 7889999999999999999999999998743 22222222 45788888875
No 265
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=91.91 E-value=0.32 Score=40.70 Aligned_cols=51 Identities=16% Similarity=0.424 Sum_probs=40.0
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCC---eeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGN---FMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~---~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
.+....|+|++..+..|..+|.|++||..+. .+..+.-+ ..+|.++.|...
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h------~~~v~~~~~~~~ 63 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH------NGQVTGVDWAPD 63 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECC------SSCEEEEEEETT
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCC------CCcccEEEEeCC
Confidence 6788899999999999999999999999766 44444322 446888888753
No 266
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=91.91 E-value=0.93 Score=38.28 Aligned_cols=76 Identities=17% Similarity=0.245 Sum_probs=51.7
Q ss_pred eEEeecccCc-eeeeccc----------------ceeeeEEEEeCCCCCeEEEEeeC---ceEEEEeC-CCCeeeeeeee
Q psy14042 146 AVIVGSVDGN-RIWGKEF----------------KKTSMLGVQWTSDSQNLLFAIKG---GQVHLYDY-EGNFMNKVSMW 204 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~----------------~~~~~~~~~~~~~~~~~~~g~~~---g~~~~~d~-~g~~~~~~~~~ 204 (238)
..+++..+|. ++|...- . ..+....|+|++..+..|..+ |.|++||. .|..+..+.-.
T Consensus 199 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~-~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~ 277 (397)
T 1sq9_A 199 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS-NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP 277 (397)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCC---CCC-CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC
T ss_pred eEEEEeCCCcEEEEECCCCceeEEEeccccccccC-CccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccC
Confidence 5556677776 7776431 2 256778999999999999999 99999997 56666665541
Q ss_pred cCCC-------CCceeEEEEEeecC
Q psy14042 205 SGPG-------SEMGEIAALKYYLN 222 (238)
Q Consensus 205 ~~~~-------~~~~~i~~~~w~~~ 222 (238)
..+. ....+|.++.|...
T Consensus 278 ~~~~~~~~~~~~~~~~v~~~~~~~~ 302 (397)
T 1sq9_A 278 THSSQASLGEFAHSSWVMSLSFNDS 302 (397)
T ss_dssp --------CCBSBSSCEEEEEECSS
T ss_pred cccccccccccccCCcEEEEEECCC
Confidence 0000 02457888888753
No 267
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=91.89 E-value=0.23 Score=44.07 Aligned_cols=72 Identities=7% Similarity=0.060 Sum_probs=52.1
Q ss_pred EeecccCc-eeeec------ccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeee-eeeeecCCC-----CCceeE
Q psy14042 148 IVGSVDGN-RIWGK------EFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMN-KVSMWSGPG-----SEMGEI 214 (238)
Q Consensus 148 ~~~~~~g~-rv~g~------~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~-~~~~~~~~~-----~~~~~i 214 (238)
.+...+|. .+|.- .+.. .+.++.|+|++ +.+|..+|.+++|+..|..+. +-.+++.+. .+...+
T Consensus 140 av~~~dG~L~v~dl~~~~~~~~~~-~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V 216 (388)
T 1xip_A 140 VILNSVNDLSALDLRTKSTKQLAQ-NVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSP 216 (388)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEE-SEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEE
T ss_pred EEEECCCCEEEEEccCCccccccC-CceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeE
Confidence 33455666 66522 2333 78899999999 789999999999999998865 445655432 136889
Q ss_pred EEEEeecC
Q psy14042 215 AALKYYLN 222 (238)
Q Consensus 215 ~~~~w~~~ 222 (238)
.+|.|-.+
T Consensus 217 ~sI~wl~~ 224 (388)
T 1xip_A 217 LSVTILSP 224 (388)
T ss_dssp EEEEESSS
T ss_pred EEEEEecC
Confidence 99999864
No 268
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=91.89 E-value=1 Score=39.28 Aligned_cols=72 Identities=17% Similarity=0.220 Sum_probs=51.4
Q ss_pred ecceEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCc
Q psy14042 143 RASAVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEM 211 (238)
Q Consensus 143 ~~~~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~ 211 (238)
.....+.++.+|. ++|...-.+ ..+..+.|++++ .+..|..+|.|++||.. |..+..+.-+ .
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h------~ 203 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGH------N 203 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCC------S
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCC------C
Confidence 4466778888998 999743211 256778899887 89999999999999985 5555544433 4
Q ss_pred eeEEEEEeec
Q psy14042 212 GEIAALKYYL 221 (238)
Q Consensus 212 ~~i~~~~w~~ 221 (238)
.+|.++.|..
T Consensus 204 ~~v~~l~~~~ 213 (464)
T 3v7d_B 204 STVRCLDIVE 213 (464)
T ss_dssp SCEEEEEEEE
T ss_pred CccEEEEEec
Confidence 4677777764
No 269
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=91.80 E-value=0.34 Score=41.60 Aligned_cols=51 Identities=6% Similarity=0.023 Sum_probs=39.9
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeee-eeecCCCCCceeEEEEEeecC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKV-SMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~-~~~~~~~~~~~~i~~~~w~~~ 222 (238)
.+..+.|+|+++.+..|..+|.|+|||.. |..+..+ .-| ..+|.++.|...
T Consensus 271 ~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH------~~~V~~v~fSpd 323 (365)
T 4h5i_A 271 GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH------SFAITEVTISPD 323 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS------SSCEEEEEECTT
T ss_pred CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc------cCCEEEEEECCC
Confidence 46788999999999999999999999985 6655543 333 457888888654
No 270
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=91.77 E-value=0.9 Score=37.80 Aligned_cols=77 Identities=12% Similarity=0.176 Sum_probs=50.0
Q ss_pred ceEEeecccCc-eeeecccc-------------eeeeEEEEeCCC---CCeEEEEeeCceEEEEeCCCCe-eeeeeeecC
Q psy14042 145 SAVIVGSVDGN-RIWGKEFK-------------KTSMLGVQWTSD---SQNLLFAIKGGQVHLYDYEGNF-MNKVSMWSG 206 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~~-------------~~~~~~~~~~~~---~~~~~~g~~~g~~~~~d~~g~~-~~~~~~~~~ 206 (238)
...+.++.+|. ++|...-. ...+....|+|+ +..+..|..+|.|++||..... .....+...
T Consensus 173 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 252 (379)
T 3jrp_A 173 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE 252 (379)
T ss_dssp CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSS
T ss_pred CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeecc
Confidence 45567778887 88842210 125678899999 8999999999999999986432 111222211
Q ss_pred CCCCceeEEEEEeecC
Q psy14042 207 PGSEMGEIAALKYYLN 222 (238)
Q Consensus 207 ~~~~~~~i~~~~w~~~ 222 (238)
. ....+|.++.|...
T Consensus 253 ~-~~~~~v~~~~~s~~ 267 (379)
T 3jrp_A 253 E-KFPDVLWRASWSLS 267 (379)
T ss_dssp S-CCSSCEEEEEECSS
T ss_pred c-cCCCcEEEEEEcCC
Confidence 1 12456778888654
No 271
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=91.73 E-value=0.79 Score=37.94 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=48.6
Q ss_pred eEEeecccCc-eeeecc----------cceeeeEEEEeCC-CCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCce
Q psy14042 146 AVIVGSVDGN-RIWGKE----------FKKTSMLGVQWTS-DSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMG 212 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~----------~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~ 212 (238)
..+.+..+|. ++|... ... .+..+.|+| ++..+..|..+|.|++||.. |..+..+... .....
T Consensus 87 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~ 162 (366)
T 3k26_A 87 LLAVAGSRGIIRIINPITMQCIKHYVGHGN-AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV---EGHRD 162 (366)
T ss_dssp EEEEEETTCEEEEECTTTCCEEEEEESCCS-CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST---TSCSS
T ss_pred EEEEecCCCEEEEEEchhceEeeeecCCCC-cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc---ccccC
Confidence 3445556665 666532 122 567789999 89999999999999999986 5544443210 11245
Q ss_pred eEEEEEeecC
Q psy14042 213 EIAALKYYLN 222 (238)
Q Consensus 213 ~i~~~~w~~~ 222 (238)
.|.++.|...
T Consensus 163 ~v~~~~~~~~ 172 (366)
T 3k26_A 163 EVLSADYDLL 172 (366)
T ss_dssp CEEEEEECTT
T ss_pred ceeEEEECCC
Confidence 7888888754
No 272
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=91.60 E-value=0.76 Score=39.51 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=48.7
Q ss_pred ceEEeecccCc-eeeecccce----------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCce
Q psy14042 145 SAVIVGSVDGN-RIWGKEFKK----------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMG 212 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~~~----------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~ 212 (238)
...+.++.+|. ++|.-.... ..+....|+|++..+..|..+|.|++||.. |..+..+.-+ ..
T Consensus 187 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~------~~ 260 (401)
T 4aez_A 187 HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNH------NA 260 (401)
T ss_dssp TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCC------SS
T ss_pred CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCC------cc
Confidence 45566777777 777654211 256778999999999999999999999986 4444444322 33
Q ss_pred eEEEEEeec
Q psy14042 213 EIAALKYYL 221 (238)
Q Consensus 213 ~i~~~~w~~ 221 (238)
+|.++.|..
T Consensus 261 ~v~~~~~~p 269 (401)
T 4aez_A 261 AVKAVAWCP 269 (401)
T ss_dssp CCCEEEECT
T ss_pred eEEEEEECC
Confidence 455666654
No 273
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=91.56 E-value=0.65 Score=38.68 Aligned_cols=73 Identities=14% Similarity=0.254 Sum_probs=48.2
Q ss_pred eEEeecccCc-eeeecc------------cceeeeEEEEeCCC--CCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCC
Q psy14042 146 AVIVGSVDGN-RIWGKE------------FKKTSMLGVQWTSD--SQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSE 210 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~------------~~~~~~~~~~~~~~--~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~ 210 (238)
..+.+..+|. ++|.-. ... .+..+.|+++ +..+..|..+|.|++||........+..... .
T Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---~ 100 (379)
T 3jrp_A 25 RLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV---H 100 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECC---C
T ss_pred EEEEEECCCcEEEEecCCCcceeeeEecCCCC-cEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecC---C
Confidence 4455666776 777543 122 5677899988 8999999999999999997553222222211 1
Q ss_pred ceeEEEEEeecC
Q psy14042 211 MGEIAALKYYLN 222 (238)
Q Consensus 211 ~~~i~~~~w~~~ 222 (238)
..+|.++.|...
T Consensus 101 ~~~v~~~~~~~~ 112 (379)
T 3jrp_A 101 SASVNSVQWAPH 112 (379)
T ss_dssp SSCEEEEEECCG
T ss_pred CcceEEEEeCCC
Confidence 346777777654
No 274
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=91.49 E-value=0.77 Score=37.98 Aligned_cols=51 Identities=12% Similarity=0.418 Sum_probs=39.9
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCC--CeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEG--NFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g--~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
.+....|+|++..+..|..+|.|++||... ..+..+..+ ..+|.++.|...
T Consensus 177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~v~~~~~~~~ 229 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH------EKSISDMQFSPD 229 (369)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC------SSCEEEEEECTT
T ss_pred ceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC------CCceeEEEECCC
Confidence 677889999999999999999999999974 445544443 456788888653
No 275
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=91.42 E-value=0.97 Score=36.51 Aligned_cols=70 Identities=14% Similarity=0.308 Sum_probs=51.3
Q ss_pred ceEEeecccCc-eeeecc---------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCcee
Q psy14042 145 SAVIVGSVDGN-RIWGKE---------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGE 213 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~---------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~ 213 (238)
...+.++.+|. ++|... .. ..+....|+|++. +..|..+|.|++||.. |..+..+..+ ..+
T Consensus 156 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~ 227 (313)
T 3odt_A 156 NKFLTASADKTIKLWQNDKVIKTFSGIHN-DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH------ESF 227 (313)
T ss_dssp TEEEEEETTSCEEEEETTEEEEEECSSCS-SCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC------SSC
T ss_pred CEEEEEECCCCEEEEecCceEEEEeccCc-ccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC------Cce
Confidence 45566677777 777532 22 2567789999988 8899999999999986 7777766544 456
Q ss_pred EEEEEeecC
Q psy14042 214 IAALKYYLN 222 (238)
Q Consensus 214 i~~~~w~~~ 222 (238)
|.++.|...
T Consensus 228 i~~~~~~~~ 236 (313)
T 3odt_A 228 VYCIKLLPN 236 (313)
T ss_dssp EEEEEECTT
T ss_pred EEEEEEecC
Confidence 788888754
No 276
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=91.42 E-value=0.63 Score=39.89 Aligned_cols=57 Identities=23% Similarity=0.437 Sum_probs=43.0
Q ss_pred ceEEeecccCc-eeeecccc----------eeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeee
Q psy14042 145 SAVIVGSVDGN-RIWGKEFK----------KTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKV 201 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~ 201 (238)
...+.++.||. ++|.-+.. ...+..+.|+|++..+..|..+|.|++||.. |..+..+
T Consensus 219 ~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~ 287 (380)
T 3iz6_a 219 NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVY 287 (380)
T ss_dssp CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEe
Confidence 45667888888 99974321 0146788999999999999999999999986 4444433
No 277
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=91.06 E-value=0.64 Score=40.59 Aligned_cols=57 Identities=26% Similarity=0.536 Sum_probs=43.3
Q ss_pred ceEEeecccCc-eeeecccc-----------eeeeEEEEeCC-CCCeEEEEeeCceEEEEeCCCCeeeee
Q psy14042 145 SAVIVGSVDGN-RIWGKEFK-----------KTSMLGVQWTS-DSQNLLFAIKGGQVHLYDYEGNFMNKV 201 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~~-----------~~~~~~~~~~~-~~~~~~~g~~~g~~~~~d~~g~~~~~~ 201 (238)
.+.+.|+.+|. ++|.-... ...+..+.|+| ++..+.-|..+|.|++||..|..+..+
T Consensus 133 ~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 202 (435)
T 4e54_B 133 STVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVF 202 (435)
T ss_dssp TCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEE
Confidence 46778999998 99953211 11567889997 678899999999999999988765433
No 278
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=90.95 E-value=1.1 Score=37.12 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=39.3
Q ss_pred eeEEEEeCCC----CCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeec
Q psy14042 166 SMLGVQWTSD----SQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYL 221 (238)
Q Consensus 166 ~~~~~~~~~~----~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~ 221 (238)
.+....|+|+ +..+..|..+|.|++||.. |..+..+.-+ ..+|.++.|..
T Consensus 71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------~~~i~~~~~~~ 125 (366)
T 3k26_A 71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGH------GNAINELKFHP 125 (366)
T ss_dssp CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESC------CSCEEEEEECS
T ss_pred cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCC------CCcEEEEEECC
Confidence 3677889999 6689999999999999975 6666655533 45788888875
No 279
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=90.86 E-value=0.96 Score=38.73 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=48.5
Q ss_pred ceEEeecccCc-eeeecccc----------------eeeeEEEEeCCCC-CeEEEEeeCceEEEEeCC-CCeeeeeeeec
Q psy14042 145 SAVIVGSVDGN-RIWGKEFK----------------KTSMLGVQWTSDS-QNLLFAIKGGQVHLYDYE-GNFMNKVSMWS 205 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~~----------------~~~~~~~~~~~~~-~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~ 205 (238)
...+.++.+|. ++|.-.-. ...+..+.|+|++ ..+..|..+|.|++||.. |..+..+...
T Consensus 95 ~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~- 173 (402)
T 2aq5_A 95 NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPD- 173 (402)
T ss_dssp TEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTT-
T ss_pred CEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecC-
Confidence 34556677776 77764321 0156778999998 689999999999999975 5445444101
Q ss_pred CCCCCceeEEEEEeec
Q psy14042 206 GPGSEMGEIAALKYYL 221 (238)
Q Consensus 206 ~~~~~~~~i~~~~w~~ 221 (238)
.....|.++.|..
T Consensus 174 ---~~~~~v~~~~~~~ 186 (402)
T 2aq5_A 174 ---VHPDTIYSVDWSR 186 (402)
T ss_dssp ---TCCSCEEEEEECT
T ss_pred ---CCCCceEEEEECC
Confidence 1144677888865
No 280
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=90.74 E-value=0.76 Score=39.04 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=38.1
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCC-----CeeeeeeeecCCCCCceeEEEEEeec
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEG-----NFMNKVSMWSGPGSEMGEIAALKYYL 221 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g-----~~~~~~~~~~~~~~~~~~i~~~~w~~ 221 (238)
.+..+.|+|++..+..|..+|.|++||... ..+..+.-+ ..+|.++.|..
T Consensus 69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h------~~~v~~~~~~~ 123 (416)
T 2pm9_A 69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNH------SSSVKTVKFNA 123 (416)
T ss_dssp CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCS------SSCCCEEEECS
T ss_pred ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCC------ccceEEEEEcC
Confidence 678899999999999999999999999976 234333322 34577777764
No 281
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=90.65 E-value=1.1 Score=41.08 Aligned_cols=75 Identities=20% Similarity=0.227 Sum_probs=50.6
Q ss_pred EEeecccCc-eeeeccc----------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCC-CCcee
Q psy14042 147 VIVGSVDGN-RIWGKEF----------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPG-SEMGE 213 (238)
Q Consensus 147 ~~~~~~~g~-rv~g~~~----------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~-~~~~~ 213 (238)
.+.++.||. ++|...- .. .+..+.|+|++..+..|..+|.|++||. .|..+..+.-..... .....
T Consensus 163 l~s~s~D~~v~lwd~~~~~~~~~l~~H~~-~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~ 241 (611)
T 1nr0_A 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTK-FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS 241 (611)
T ss_dssp EEEEETTSCEEEEETTTBEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred EEEEeCCCeEEEEECCCCeEeeeeccccC-ceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCC
Confidence 566778887 8886321 22 5778999999999999999999999995 566655442110000 12346
Q ss_pred EEEEEeecC
Q psy14042 214 IAALKYYLN 222 (238)
Q Consensus 214 i~~~~w~~~ 222 (238)
|.++.|...
T Consensus 242 V~~v~~spd 250 (611)
T 1nr0_A 242 VFGLTWSPD 250 (611)
T ss_dssp EEEEEECTT
T ss_pred EEEEEECCC
Confidence 777777653
No 282
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=90.56 E-value=0.61 Score=40.19 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=38.3
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
.+..+.|+|+++.+..|..+|.|++||.. |..+..+.-+ ..+|.++.|...
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h------~~~v~~~~~~p~ 176 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH------EQDIYSLDYFPS 176 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC------SSCEEEEEECTT
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccC------CCCEEEEEEcCC
Confidence 47789999999999999999999999986 4444444333 345777777643
No 283
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=90.49 E-value=0.77 Score=39.64 Aligned_cols=70 Identities=4% Similarity=-0.057 Sum_probs=49.1
Q ss_pred eEEeecccCc-eeeecccce--------------eeeEEEEeCC--------CCCeEEEEeeCceEEEEeC-CCCeeeee
Q psy14042 146 AVIVGSVDGN-RIWGKEFKK--------------TSMLGVQWTS--------DSQNLLFAIKGGQVHLYDY-EGNFMNKV 201 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~~--------------~~~~~~~~~~--------~~~~~~~g~~~g~~~~~d~-~g~~~~~~ 201 (238)
+...++.|+. |+|..+-.. ..+..+.|+| |+.++.-|..++.|+|||. .|..+..+
T Consensus 103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~ 182 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG 182 (393)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee
Confidence 4456677887 888643221 1578889987 8899999999999999996 45555444
Q ss_pred eeecCCCCCceeEEEEEeec
Q psy14042 202 SMWSGPGSEMGEIAALKYYL 221 (238)
Q Consensus 202 ~~~~~~~~~~~~i~~~~w~~ 221 (238)
.-+ ..++.++.|..
T Consensus 183 ~~~------~~~v~~v~~~p 196 (393)
T 4gq1_A 183 YPL------SSPGISVQFRP 196 (393)
T ss_dssp EEC------SSCEEEEEEET
T ss_pred cCC------CCCcEEEEECC
Confidence 433 34567777764
No 284
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=90.37 E-value=1.4 Score=37.19 Aligned_cols=50 Identities=18% Similarity=0.369 Sum_probs=36.9
Q ss_pred eEEeecccCc-eeeecccc-----------eeeeEEEEeCCCCCeEEEEeeCceEEEEeCCC
Q psy14042 146 AVIVGSVDGN-RIWGKEFK-----------KTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEG 195 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~-----------~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g 195 (238)
..+.++.+|. ++|...-. ...+..+.|+|++..+..|..+|.|++||...
T Consensus 75 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~ 136 (345)
T 3fm0_A 75 YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136 (345)
T ss_dssp EEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred EEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence 3445666776 77743211 01577889999999999999999999999753
No 285
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=90.26 E-value=1.3 Score=37.35 Aligned_cols=72 Identities=13% Similarity=0.157 Sum_probs=50.8
Q ss_pred cceEEeecccCc-eeeeccc----------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCc
Q psy14042 144 ASAVIVGSVDGN-RIWGKEF----------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEM 211 (238)
Q Consensus 144 ~~~~~~~~~~g~-rv~g~~~----------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~ 211 (238)
.+..+++..+|. ++|...- .. .+....|+|++..+..|..+|.|++||.. |..+..+.-+ .
T Consensus 217 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------~ 289 (425)
T 1r5m_A 217 DDKFVIPGPKGAIFVYQITEKTPTGKLIGHHG-PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH------S 289 (425)
T ss_dssp TTEEEEECGGGCEEEEETTCSSCSEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC------S
T ss_pred CCEEEEEcCCCeEEEEEcCCCceeeeeccCCC-ceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC------C
Confidence 455666777776 6665332 22 57788999999999999999999999975 5555544322 4
Q ss_pred eeEEEEEeecC
Q psy14042 212 GEIAALKYYLN 222 (238)
Q Consensus 212 ~~i~~~~w~~~ 222 (238)
.+|.++.|...
T Consensus 290 ~~i~~~~~~~~ 300 (425)
T 1r5m_A 290 QSIVSASWVGD 300 (425)
T ss_dssp SCEEEEEEETT
T ss_pred ccEEEEEECCC
Confidence 46778888653
No 286
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=90.00 E-value=0.87 Score=38.72 Aligned_cols=53 Identities=13% Similarity=0.314 Sum_probs=40.5
Q ss_pred eeEEEEeCCCCCeEEEEeeCce-EEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQ-VHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~-~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
.+..+.|+|++..+..|..+|. |++||.. |..+..+.. +....+|.++.|...
T Consensus 197 ~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~----g~h~~~v~~~~~s~~ 251 (355)
T 3vu4_A 197 PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRR----GLDRADVVDMKWSTD 251 (355)
T ss_dssp CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEEC----TTCCSCEEEEEECTT
T ss_pred ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc----CCCCCcEEEEEECCC
Confidence 6788999999999999999998 9999996 777766652 101346777777653
No 287
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=89.99 E-value=0.67 Score=38.19 Aligned_cols=49 Identities=6% Similarity=0.199 Sum_probs=36.8
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCC---eeeeeeeecCCCCCceeEEEEEee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGN---FMNKVSMWSGPGSEMGEIAALKYY 220 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~---~~~~~~~~~~~~~~~~~i~~~~w~ 220 (238)
.+..+.|+|+++.+..|..+|.|+|||..+. .+..+.-| ..+|-++.|.
T Consensus 11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH------~~~V~~v~~s 62 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGH------EGPVWRVDWA 62 (297)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCC------SSCEEEEEEC
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccc------cCCeEEEEec
Confidence 6778899999999999999999999998643 33333322 3456677774
No 288
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=89.98 E-value=2.3 Score=35.96 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=31.0
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVS 202 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~ 202 (238)
.+....|+|++..+..|..+|.|++||.. |..+..+.
T Consensus 156 ~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~ 193 (354)
T 2pbi_B 156 YLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH 193 (354)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc
Confidence 46788999999999999999999999974 66665554
No 289
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=89.94 E-value=0.76 Score=39.94 Aligned_cols=50 Identities=14% Similarity=0.298 Sum_probs=40.4
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeec
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYL 221 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~ 221 (238)
.+.++.|+|++..+..|..+|.|+|||.. |.+...+.-| ..+|.++.|..
T Consensus 110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h------~~~V~~v~~~~ 160 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH------TDSVQDISFDH 160 (410)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCC------SSCEEEEEECT
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEecc------CCcEEEEEEcC
Confidence 78899999999999999999999999974 7777666544 34577777754
No 290
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=89.85 E-value=1.5 Score=38.07 Aligned_cols=70 Identities=16% Similarity=0.324 Sum_probs=51.2
Q ss_pred ceEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCcee
Q psy14042 145 SAVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMGE 213 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~~ 213 (238)
...+.++.+|. ++|...-.+ ..+....|+|++..+..|..+|.|++||. .|..+..+.-+ ..+
T Consensus 281 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h------~~~ 354 (464)
T 3v7d_B 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH------TAL 354 (464)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC------SSC
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC------CCc
Confidence 45667777887 888643211 24667899999999999999999999997 57777666544 345
Q ss_pred EEEEEee
Q psy14042 214 IAALKYY 220 (238)
Q Consensus 214 i~~~~w~ 220 (238)
|.++.|.
T Consensus 355 v~~~~~~ 361 (464)
T 3v7d_B 355 VGLLRLS 361 (464)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 7777765
No 291
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=89.62 E-value=2.9 Score=33.95 Aligned_cols=70 Identities=10% Similarity=0.141 Sum_probs=48.0
Q ss_pred eEEeecccCc-eeeecc---------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeE
Q psy14042 146 AVIVGSVDGN-RIWGKE---------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEI 214 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~---------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i 214 (238)
..+++..+|. ++|... ... .+....|+|++..+..|..+|.|++||.. |..+.... ...+|
T Consensus 238 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-------~~~~v 309 (337)
T 1gxr_A 238 WLAVGMESSNVEVLHVNKPDKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-------ESSSV 309 (337)
T ss_dssp EEEEEETTSCEEEEETTSSCEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-------CSSCE
T ss_pred EEEEEcCCCcEEEEECCCCCeEEEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec-------CCCcE
Confidence 3445555665 666533 232 57788999999999999999999999975 44442221 14568
Q ss_pred EEEEeecCC
Q psy14042 215 AALKYYLNR 223 (238)
Q Consensus 215 ~~~~w~~~~ 223 (238)
.++.|....
T Consensus 310 ~~~~~s~~~ 318 (337)
T 1gxr_A 310 LSCDISVDD 318 (337)
T ss_dssp EEEEECTTS
T ss_pred EEEEECCCC
Confidence 888887643
No 292
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=89.56 E-value=0.59 Score=38.56 Aligned_cols=51 Identities=10% Similarity=0.174 Sum_probs=39.3
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCe----eeeeeeecCCCCCceeEEEEEeecC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNF----MNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~----~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
.+..+.|+|++..+..|..+|.|++||..... ...+.-+ ..+|.++.|...
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~ 67 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRY------KHPLLCCNFIDN 67 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEEC------SSCEEEEEEEES
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeec------CCceEEEEECCC
Confidence 78889999999999999999999999986443 3222222 457888888754
No 293
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=89.50 E-value=1.2 Score=36.68 Aligned_cols=49 Identities=22% Similarity=0.470 Sum_probs=37.4
Q ss_pred ceEEeecccCc-eeeecc---------------cceeeeEEEEeCCCCC-eEEEEeeCceEEEEeCC
Q psy14042 145 SAVIVGSVDGN-RIWGKE---------------FKKTSMLGVQWTSDSQ-NLLFAIKGGQVHLYDYE 194 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~---------------~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~d~~ 194 (238)
...+++..+|. ++|... .. ..+..+.|+|++. ++..|..+|.|++||..
T Consensus 225 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 225 NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHK-STVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCS-SCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCc-CCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 44556677776 777542 12 2567889999998 89999999999999975
No 294
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=89.47 E-value=2.8 Score=35.09 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=39.9
Q ss_pred ceEEeecccCc-eeeecc-----------------------cceeeeEEEEeCC-CCCeEEEEeeCceEEEEeCCCCe
Q psy14042 145 SAVIVGSVDGN-RIWGKE-----------------------FKKTSMLGVQWTS-DSQNLLFAIKGGQVHLYDYEGNF 197 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~-----------------------~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~d~~g~~ 197 (238)
...+.++.+|. ++|... ... .+..+.|+| ++..+..|..+|.|++||.....
T Consensus 57 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 133 (408)
T 4a11_B 57 RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY-SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ 133 (408)
T ss_dssp CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS-CEEEEEECTTCTTCEEEEETTSEEEEEETTTTE
T ss_pred CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC-cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc
Confidence 34556777887 888654 332 688899999 77799999999999999986443
No 295
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=89.46 E-value=0.56 Score=40.39 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=28.2
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGN 196 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~ 196 (238)
.+..+.|+|++..+..|..+|.|+|||....
T Consensus 30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~ 60 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGDKGGRVVIFQQEQE 60 (447)
T ss_dssp SEEEEEECSSSSEEEEEETTSEEEEEEECC-
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEecCC
Confidence 8899999999999999999999999998643
No 296
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=89.43 E-value=1.3 Score=39.66 Aligned_cols=71 Identities=8% Similarity=0.245 Sum_probs=52.2
Q ss_pred eEEeecccCc-eeeecc-----------cceeeeEEEEeCC----------CCCeEEEEeeCceEEEEeCCC--Ceeeee
Q psy14042 146 AVIVGSVDGN-RIWGKE-----------FKKTSMLGVQWTS----------DSQNLLFAIKGGQVHLYDYEG--NFMNKV 201 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~-----------~~~~~~~~~~~~~----------~~~~~~~g~~~g~~~~~d~~g--~~~~~~ 201 (238)
..+.++.+|. ++|... .. ..+..+.|+| ++..+..|..+|.|++||... ..+..+
T Consensus 502 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 580 (615)
T 1pgu_A 502 YIAAGDVMGKILLYDLQSREVKTSRWAFRT-SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL 580 (615)
T ss_dssp EEEEEETTSCEEEEETTTTEEEECCSCCCS-SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET
T ss_pred EEEEcCCCCeEEEeeCCCCcceeEeecCCC-CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh
Confidence 4556677777 787653 22 2678889999 999999999999999999964 344443
Q ss_pred eeecCCCCCceeEEEEEeecCC
Q psy14042 202 SMWSGPGSEMGEIAALKYYLNR 223 (238)
Q Consensus 202 ~~~~~~~~~~~~i~~~~w~~~~ 223 (238)
.-+ ..+|.++.|....
T Consensus 581 ~~h------~~~v~~l~~s~~~ 596 (615)
T 1pgu_A 581 NAH------KDGVNNLLWETPS 596 (615)
T ss_dssp TSS------TTCEEEEEEEETT
T ss_pred hcC------ccceEEEEEcCCC
Confidence 333 4578999998654
No 297
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=89.38 E-value=1.8 Score=37.26 Aligned_cols=70 Identities=9% Similarity=0.127 Sum_probs=48.9
Q ss_pred eEEeecccCc-eeeecc------------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCc
Q psy14042 146 AVIVGSVDGN-RIWGKE------------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEM 211 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~------------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~ 211 (238)
..+.++.+|. ++|..+ -.. .+..+.|+|++..+..|+.+|.|++||.. |..+..+.+. ..
T Consensus 184 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~ 257 (437)
T 3gre_A 184 LLVALTNLSRVIIFDIRTLERLQIIENSPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG-----DH 257 (437)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT-----TC
T ss_pred EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC-----CC
Confidence 4456666776 777542 122 67788999999999999999999999975 5555544432 13
Q ss_pred eeEEEEEeec
Q psy14042 212 GEIAALKYYL 221 (238)
Q Consensus 212 ~~i~~~~w~~ 221 (238)
.+|.++.|..
T Consensus 258 ~~v~~~~~~~ 267 (437)
T 3gre_A 258 APITHVEVCQ 267 (437)
T ss_dssp EEEEEEEECT
T ss_pred CceEEEEecc
Confidence 4677776654
No 298
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=89.26 E-value=1.9 Score=35.36 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=37.1
Q ss_pred eEEeecccCc-eeeecc------------cceeeeEEEEeCCC--CCeEEEEeeCceEEEEeCCCC
Q psy14042 146 AVIVGSVDGN-RIWGKE------------FKKTSMLGVQWTSD--SQNLLFAIKGGQVHLYDYEGN 196 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~------------~~~~~~~~~~~~~~--~~~~~~g~~~g~~~~~d~~g~ 196 (238)
..+.++.||. ++|... -.. .+..+.|+++ +..+.-|..+|.|++||....
T Consensus 23 ~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~-~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~ 87 (297)
T 2pm7_B 23 RMATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHPKFGTILASCSYDGKVMIWKEENG 87 (297)
T ss_dssp EEEEEETTSCEEEEEBCSSCBCCCEEECCCSS-CEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS
T ss_pred EEEEEeCCCEEEEEecCCCCcEEEEEEccccC-CeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC
Confidence 3456677887 888532 122 5678899874 789999999999999998643
No 299
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=89.00 E-value=2.1 Score=39.83 Aligned_cols=75 Identities=20% Similarity=0.388 Sum_probs=49.9
Q ss_pred eEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEE
Q psy14042 146 AVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIA 215 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 215 (238)
..+.++.+|. ++|.-.-.+ ..+..+.|+|++..+..|..+|.|++||..|.....+.. ........|.
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~--~~~~h~~~v~ 521 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE--GGEGHRDWVS 521 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS--STTSCSSCEE
T ss_pred EEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc--CCCCCCCcEE
Confidence 4456778888 999643211 146788999999999999999999999987764433221 1111234566
Q ss_pred EEEeecC
Q psy14042 216 ALKYYLN 222 (238)
Q Consensus 216 ~~~w~~~ 222 (238)
++.|..+
T Consensus 522 ~~~~~~~ 528 (694)
T 3dm0_A 522 CVRFSPN 528 (694)
T ss_dssp EEEECSC
T ss_pred EEEEeCC
Confidence 6666543
No 300
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=88.84 E-value=1.4 Score=36.62 Aligned_cols=53 Identities=25% Similarity=0.480 Sum_probs=40.5
Q ss_pred ceEEeecccCc-eeeecc--------------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeC--CCCee
Q psy14042 145 SAVIVGSVDGN-RIWGKE--------------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDY--EGNFM 198 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~--------------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~--~g~~~ 198 (238)
...+.++.||. ++|..+ ... .+..+.|+|++..+..|..+|.|++||. .|...
T Consensus 229 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~-~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~ 298 (316)
T 3bg1_A 229 STIASCSQDGRVFIWTCDDASSNTWSPKLLHKFND-VVWHVSWSITANILAVSGGDNKVTLWKESVDGQWV 298 (316)
T ss_dssp CEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSS-CEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEE
T ss_pred ceEEEEcCCCeEEEEEccCccccchhhhhhhcCCC-cEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEE
Confidence 34567788888 999532 122 5778999999999999999999999996 35443
No 301
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=88.66 E-value=1.3 Score=35.87 Aligned_cols=39 Identities=15% Similarity=0.370 Sum_probs=32.1
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMW 204 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~ 204 (238)
.+..+.|+|+++.+..|+.+|.|++||.. |..+..+.-+
T Consensus 69 ~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h 108 (318)
T 4ggc_A 69 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH 108 (318)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred eEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCc
Confidence 47788999999999999999999999985 5556555433
No 302
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=88.28 E-value=1.3 Score=41.93 Aligned_cols=73 Identities=14% Similarity=0.254 Sum_probs=48.7
Q ss_pred eEEeecccCc-eeeecc------------cceeeeEEEEeCCC--CCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCC
Q psy14042 146 AVIVGSVDGN-RIWGKE------------FKKTSMLGVQWTSD--SQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSE 210 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~------------~~~~~~~~~~~~~~--~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~ 210 (238)
..+.++.+|. ++|... -.. .+..+.|+|+ +..+..|..+|.|++||..+.....+..... .
T Consensus 23 ~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~-~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~---h 98 (753)
T 3jro_A 23 RLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV---H 98 (753)
T ss_dssp CEEEEETTTEEEEEEEETTEEEEEEEECCCSS-CEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECC---C
T ss_pred eEEEEECCCcEEEEecCCCCCccceeccCCcC-ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccC---C
Confidence 4456667776 777543 122 5778899988 9999999999999999987653222222211 1
Q ss_pred ceeEEEEEeecC
Q psy14042 211 MGEIAALKYYLN 222 (238)
Q Consensus 211 ~~~i~~~~w~~~ 222 (238)
..+|.++.|...
T Consensus 99 ~~~V~~v~~sp~ 110 (753)
T 3jro_A 99 SASVNSVQWAPH 110 (753)
T ss_dssp SSCEEEEEECCG
T ss_pred CCCeEEEEECCC
Confidence 446777777654
No 303
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=87.98 E-value=2.3 Score=35.01 Aligned_cols=70 Identities=16% Similarity=0.366 Sum_probs=45.9
Q ss_pred eEEeecccCc-eeeecccce-----e---------eeEEEE----eCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecC
Q psy14042 146 AVIVGSVDGN-RIWGKEFKK-----T---------SMLGVQ----WTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSG 206 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~~-----~---------~~~~~~----~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~ 206 (238)
..+.++.+|. ++|...-.. . .+..+. |+|++..+..|..+|.|++||..........-+
T Consensus 131 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-- 208 (357)
T 3i2n_A 131 EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNI-- 208 (357)
T ss_dssp EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEEC--
T ss_pred EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCC--
Confidence 4556677777 888644321 0 233344 889999999999999999999976554333222
Q ss_pred CCCCceeEEEEEeec
Q psy14042 207 PGSEMGEIAALKYYL 221 (238)
Q Consensus 207 ~~~~~~~i~~~~w~~ 221 (238)
..+|.++.|..
T Consensus 209 ----~~~v~~~~~~~ 219 (357)
T 3i2n_A 209 ----KNGVCSLEFDR 219 (357)
T ss_dssp ----SSCEEEEEESC
T ss_pred ----CCceEEEEcCC
Confidence 34677777765
No 304
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=87.98 E-value=2.8 Score=35.61 Aligned_cols=48 Identities=6% Similarity=-0.009 Sum_probs=34.3
Q ss_pred EEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 170 VQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 170 ~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
..|+|++..+..|..+|.|++||.. |..+..+.. ....+|.++.|...
T Consensus 253 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~ 301 (420)
T 3vl1_A 253 LEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS-----KFTCSCNSLTVDGN 301 (420)
T ss_dssp TCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC-----TTSSCEEEEEECSS
T ss_pred eEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc-----ccCCCceeEEEeCC
Confidence 4578999999999999999999985 443433321 12346777877654
No 305
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=87.92 E-value=2.4 Score=36.01 Aligned_cols=69 Identities=12% Similarity=0.110 Sum_probs=46.7
Q ss_pred eEEeecccCc-eeeecc----------cceeeeEEEEeCCCCC-eEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCcee
Q psy14042 146 AVIVGSVDGN-RIWGKE----------FKKTSMLGVQWTSDSQ-NLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGE 213 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~----------~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~ 213 (238)
..+.++.+|. ++|... ... .+..+.|+|++. ++.-|..+|.|+|||.+...+.+..-| ..+
T Consensus 241 ~la~g~~d~~i~~wd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H------~~~ 313 (357)
T 4g56_B 241 TFACGDETGNVSLVNIKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSH------RDF 313 (357)
T ss_dssp EEEEEESSSCEEEEESSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCC------SSC
T ss_pred eEEEeecccceeEEECCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCC------CCC
Confidence 4556777776 777532 122 567889999874 677899999999999975443322212 346
Q ss_pred EEEEEeec
Q psy14042 214 IAALKYYL 221 (238)
Q Consensus 214 i~~~~w~~ 221 (238)
|.+|.|..
T Consensus 314 V~~vafsP 321 (357)
T 4g56_B 314 VTGVAWSP 321 (357)
T ss_dssp EEEEEECS
T ss_pred EEEEEEeC
Confidence 88888863
No 306
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=87.71 E-value=2.7 Score=41.68 Aligned_cols=70 Identities=11% Similarity=0.237 Sum_probs=50.4
Q ss_pred eEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeE
Q psy14042 146 AVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEI 214 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i 214 (238)
..+.++.+|. ++|...-.. ..+..+.|+|++..+..|..+|.|++||.. |..+..+.-+ ..+|
T Consensus 629 ~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~------~~~v 702 (1249)
T 3sfz_A 629 RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH------SEQV 702 (1249)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC------SSCE
T ss_pred EEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCC------CCcE
Confidence 4456677887 888643211 256788999999999999999999999985 6666655533 3456
Q ss_pred EEEEeec
Q psy14042 215 AALKYYL 221 (238)
Q Consensus 215 ~~~~w~~ 221 (238)
.++.|..
T Consensus 703 ~~~~~~~ 709 (1249)
T 3sfz_A 703 NCCHFTN 709 (1249)
T ss_dssp EEEEECS
T ss_pred EEEEEec
Confidence 6666654
No 307
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=87.69 E-value=3.2 Score=35.97 Aligned_cols=73 Identities=15% Similarity=0.142 Sum_probs=50.2
Q ss_pred ceEEeecccCc-eeeecccc------------eeeeEEEEeCCCCC-eEEEEeeCceEEEEeCCC--CeeeeeeeecCCC
Q psy14042 145 SAVIVGSVDGN-RIWGKEFK------------KTSMLGVQWTSDSQ-NLLFAIKGGQVHLYDYEG--NFMNKVSMWSGPG 208 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~~------------~~~~~~~~~~~~~~-~~~~g~~~g~~~~~d~~g--~~~~~~~~~~~~~ 208 (238)
...+.++.+|. ++|..+-. ...+..+.|+|++. ++..|..+|.|++||... ..+..+.-+
T Consensus 245 ~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h---- 320 (430)
T 2xyi_A 245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH---- 320 (430)
T ss_dssp TEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC----
T ss_pred CEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC----
Confidence 34455666776 77764321 12467889999987 677999999999999863 334444433
Q ss_pred CCceeEEEEEeecCC
Q psy14042 209 SEMGEIAALKYYLNR 223 (238)
Q Consensus 209 ~~~~~i~~~~w~~~~ 223 (238)
..+|.++.|....
T Consensus 321 --~~~v~~i~~sp~~ 333 (430)
T 2xyi_A 321 --KDEIFQVQWSPHN 333 (430)
T ss_dssp --SSCEEEEEECSSC
T ss_pred --CCCEEEEEECCCC
Confidence 4578899997644
No 308
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=87.38 E-value=1.2 Score=41.63 Aligned_cols=54 Identities=6% Similarity=0.023 Sum_probs=38.2
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
.+..+.|||++..+-.++.+|+|++||.+| .+..+. +..+ -+...+-++.|...
T Consensus 87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~-~~~~sv~svafSPD 140 (588)
T 2j04_A 87 YPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGN-LSSRTYHCFEWNPI 140 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSC-STTTCEEEEEECSS
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCc-cccccEEEEEEcCC
Confidence 799999999999999999999999999766 333333 2111 01224667777553
No 309
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=87.13 E-value=3.2 Score=36.49 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=50.4
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccCCC--------cccccHHHHHHHHHhCCCeEEE
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYL-RTRPAIIVANKIDLAR--------ARAVSSQDAKNLAASFKVKFIE 97 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~-~~~piilVgNK~DL~~--------~~~v~~~~~~~~~~~~~~~~~e 97 (238)
.+|++++|.|. + +....+.+..+|..+... ...|.+++.||+|... ......++.+.+...+.+.--.
T Consensus 149 ~ad~il~vvD~~~--p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp 226 (376)
T 4a9a_A 149 TCNLLFIILDVNK--PLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE 226 (376)
T ss_dssp HCSEEEEEEETTS--HHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred hcCccccccccCc--cHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence 89999999998 5 355556666666554322 5788899999999742 1234456666666666543222
Q ss_pred EccCCCCCHHHHHH
Q psy14042 98 VSVGIHHNVDELLV 111 (238)
Q Consensus 98 vSA~t~~gv~elf~ 111 (238)
+--..+...+++..
T Consensus 227 v~~~~nv~eddl~d 240 (376)
T 4a9a_A 227 IAFRCDATVDDLID 240 (376)
T ss_dssp EEECSCCCHHHHHH
T ss_pred eeecccCCHHHHHH
Confidence 33333445555543
No 310
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=87.13 E-value=1.6 Score=37.37 Aligned_cols=52 Identities=6% Similarity=0.171 Sum_probs=38.9
Q ss_pred eeEEEEeCC-CCCeEEEEeeCceEEEEeCCCC--------eeeeeeeecCCCCCceeEEEEEeecCC
Q psy14042 166 SMLGVQWTS-DSQNLLFAIKGGQVHLYDYEGN--------FMNKVSMWSGPGSEMGEIAALKYYLNR 223 (238)
Q Consensus 166 ~~~~~~~~~-~~~~~~~g~~~g~~~~~d~~g~--------~~~~~~~~~~~~~~~~~i~~~~w~~~~ 223 (238)
.+..+.|+| ++..+..|..+|.|++||.... .+..+.-+ ..+|.++.|....
T Consensus 83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h------~~~v~~~~~~p~~ 143 (402)
T 2aq5_A 83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH------TKRVGIVAWHPTA 143 (402)
T ss_dssp CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC------SSCEEEEEECSSB
T ss_pred CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC------CCeEEEEEECcCC
Confidence 678899999 9999999999999999998643 23333322 4568888887553
No 311
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=86.79 E-value=2.4 Score=35.43 Aligned_cols=32 Identities=13% Similarity=0.301 Sum_probs=27.0
Q ss_pred eeEEEEeCC--CCCeEEEEeeCceEEEEeCCCCe
Q psy14042 166 SMLGVQWTS--DSQNLLFAIKGGQVHLYDYEGNF 197 (238)
Q Consensus 166 ~~~~~~~~~--~~~~~~~g~~~g~~~~~d~~g~~ 197 (238)
.+..+.|+| ++..+..|..+|.|++||.....
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~ 160 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS 160 (343)
T ss_dssp CEEEEECCC---CCEEEEEETTCCEEEEESSSSC
T ss_pred CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc
Confidence 478889999 99999999999999999986433
No 312
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=86.76 E-value=2.4 Score=36.42 Aligned_cols=56 Identities=16% Similarity=0.297 Sum_probs=42.7
Q ss_pred ceEEeecccCc-eeeeccc---------------ceeeeEEEEeCCCCCeEEEEeeCceEEEEeC----CCCeeeee
Q psy14042 145 SAVIVGSVDGN-RIWGKEF---------------KKTSMLGVQWTSDSQNLLFAIKGGQVHLYDY----EGNFMNKV 201 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~---------------~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~----~g~~~~~~ 201 (238)
...+.++.+|. ++|...- . ..+..+.|+|++..+..|..+|.|++||. .|..+..+
T Consensus 77 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 152 (437)
T 3gre_A 77 PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCS-STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFL 152 (437)
T ss_dssp CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECS-SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEE
T ss_pred CEEEEecCCceEEEeECcccccCcccceeeeccCC-CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecc
Confidence 35667788887 8886422 2 25778999999999999999999999998 45554433
No 313
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=86.74 E-value=1 Score=37.42 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=37.1
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCC-Ce--eeeeeeecCCCCCceeEEEEEeec
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEG-NF--MNKVSMWSGPGSEMGEIAALKYYL 221 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g-~~--~~~~~~~~~~~~~~~~i~~~~w~~ 221 (238)
.+..+.|+|++..+..|..+|.|+|||... .. +..+.-| ..+|-++.|..
T Consensus 15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH------~~~V~~v~~~~ 67 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGH------EGPVWQVAWAH 67 (316)
T ss_dssp CEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECC------SSCEEEEEECC
T ss_pred eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCC------CccEEEEEeCC
Confidence 788899999999999999999999999853 32 2333322 34677777753
No 314
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=86.00 E-value=3.5 Score=35.64 Aligned_cols=69 Identities=20% Similarity=0.450 Sum_probs=47.5
Q ss_pred cceEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCce
Q psy14042 144 ASAVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMG 212 (238)
Q Consensus 144 ~~~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~ 212 (238)
....+.++.+|. ++|...-.+ ..+..+.| ++..+..|..+|.|++||.. |..+..+.-+ ..
T Consensus 143 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h------~~ 214 (435)
T 1p22_A 143 DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHH------CE 214 (435)
T ss_dssp SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCC------CS
T ss_pred CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCC------CC
Confidence 345667788887 888643211 14555666 78899999999999999975 6666655533 34
Q ss_pred eEEEEEee
Q psy14042 213 EIAALKYY 220 (238)
Q Consensus 213 ~i~~~~w~ 220 (238)
+|.++.|.
T Consensus 215 ~v~~l~~~ 222 (435)
T 1p22_A 215 AVLHLRFN 222 (435)
T ss_dssp CEEEEECC
T ss_pred cEEEEEEc
Confidence 57777764
No 315
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=85.63 E-value=1.4 Score=36.94 Aligned_cols=29 Identities=10% Similarity=0.225 Sum_probs=26.7
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE 194 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~ 194 (238)
.+..+.|+|++..+..|..+|.|++||..
T Consensus 148 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 176 (377)
T 3dwl_C 148 TILSLDWHPNNVLLAAGCADRKAYVLSAY 176 (377)
T ss_dssp CEEEEEECTTSSEEEEEESSSCEEEEEEC
T ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEEE
Confidence 57788999999999999999999999974
No 316
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=85.56 E-value=1.3 Score=37.47 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=36.8
Q ss_pred eeEEEEeCC-CCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeec
Q psy14042 166 SMLGVQWTS-DSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYL 221 (238)
Q Consensus 166 ~~~~~~~~~-~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~ 221 (238)
.+..+.|+| ++..+..|..+|.|++||.. |..+..+.-+ ..+|.++.|..
T Consensus 264 ~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~------~~~v~~~~~s~ 315 (416)
T 2pm9_A 264 GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR------GNWCFKTKFAP 315 (416)
T ss_dssp CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS------SSCCCCEEECT
T ss_pred ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC------CCceEEEEECC
Confidence 567889999 99999999999999999974 6666655543 23444555544
No 317
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=85.51 E-value=3 Score=33.99 Aligned_cols=50 Identities=20% Similarity=0.223 Sum_probs=36.4
Q ss_pred EEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCCCC
Q psy14042 147 VIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGN 196 (238)
Q Consensus 147 ~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~ 196 (238)
.+.++.++. ++|...-.+ ..+..+.|+|++..+..|..+|.|++||....
T Consensus 188 ~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred EEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 344555665 666543211 14677899999999999999999999998643
No 318
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=85.30 E-value=5.2 Score=34.64 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=48.4
Q ss_pred eEEeecccCc-eeeeccc----------c------eeeeEEEEeCC-CCCeEEEEeeCceEEEEeCCCC----eeeeeee
Q psy14042 146 AVIVGSVDGN-RIWGKEF----------K------KTSMLGVQWTS-DSQNLLFAIKGGQVHLYDYEGN----FMNKVSM 203 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~----------~------~~~~~~~~~~~-~~~~~~~g~~~g~~~~~d~~g~----~~~~~~~ 203 (238)
..+.+..+|. ++|.-.- . ...+..+.|+| ++.++..|..+|.|++||.... .+..+..
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 275 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 275 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence 5667777887 8886542 0 01467789999 6778888999999999998643 3333332
Q ss_pred ecCCCCCceeEEEEEeecC
Q psy14042 204 WSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 204 ~~~~~~~~~~i~~~~w~~~ 222 (238)
+ ..+|-+|.|...
T Consensus 276 ~------~~~v~~i~~~p~ 288 (430)
T 2xyi_A 276 H------TAEVNCLSFNPY 288 (430)
T ss_dssp C------SSCEEEEEECSS
T ss_pred C------CCCeEEEEeCCC
Confidence 2 346777777653
No 319
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=85.24 E-value=1.9 Score=35.20 Aligned_cols=56 Identities=7% Similarity=0.022 Sum_probs=35.5
Q ss_pred eeEEEEeCCC-CCeEEEEeeCceEEEEeCCCCe-eeeeeeecCCCCCceeEEEEEeecC
Q psy14042 166 SMLGVQWTSD-SQNLLFAIKGGQVHLYDYEGNF-MNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 166 ~~~~~~~~~~-~~~~~~g~~~g~~~~~d~~g~~-~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
.+..+.|+|+ +.++.-|..+|.|+|||..... ..........+. ..+|.++.|..+
T Consensus 40 ~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h-~~~V~~~~~s~d 97 (340)
T 4aow_A 40 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH-SHFVSDVVISSD 97 (340)
T ss_dssp CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCC-SSCEEEEEECTT
T ss_pred CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCC-CCCEEEEEECCC
Confidence 7888999998 4688889999999999965322 111111111221 345777777543
No 320
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=84.94 E-value=3.7 Score=38.83 Aligned_cols=73 Identities=22% Similarity=0.336 Sum_probs=48.5
Q ss_pred eEEeecccCc-eeeecccc-----------eeeeEEEEeCCC--CCeEEEEeeCceEEEEeCCCC-eeeeeeeecCCCCC
Q psy14042 146 AVIVGSVDGN-RIWGKEFK-----------KTSMLGVQWTSD--SQNLLFAIKGGQVHLYDYEGN-FMNKVSMWSGPGSE 210 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~-----------~~~~~~~~~~~~--~~~~~~g~~~g~~~~~d~~g~-~~~~~~~~~~~~~~ 210 (238)
..+.++.+|. ++|...-. ...+..+.|+|+ +..+..|+.+|.|++||.... ......+. ..
T Consensus 69 ~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~----~~ 144 (753)
T 3jro_A 69 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID----AH 144 (753)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE----CC
T ss_pred EEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee----cC
Confidence 3445566665 66653221 126778899999 999999999999999998654 23333332 12
Q ss_pred ceeEEEEEeecC
Q psy14042 211 MGEIAALKYYLN 222 (238)
Q Consensus 211 ~~~i~~~~w~~~ 222 (238)
..+|.++.|...
T Consensus 145 ~~~v~~l~~~p~ 156 (753)
T 3jro_A 145 AIGVNSASWAPA 156 (753)
T ss_dssp SSCEEEEEECCC
T ss_pred CCceEEEEecCc
Confidence 446888888763
No 321
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=84.94 E-value=2.5 Score=36.17 Aligned_cols=59 Identities=12% Similarity=0.203 Sum_probs=44.6
Q ss_pred ceEEeecccCc-eeeeccccee-------------------------eeEEEEeCCCCCeEEEEeeCceEEEEeCC--CC
Q psy14042 145 SAVIVGSVDGN-RIWGKEFKKT-------------------------SMLGVQWTSDSQNLLFAIKGGQVHLYDYE--GN 196 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~~~~-------------------------~~~~~~~~~~~~~~~~g~~~g~~~~~d~~--g~ 196 (238)
...+.++.+|. ++|.-.-.+. .+..+.|+|++..+..|.. |.|++||.. |.
T Consensus 240 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~ 318 (447)
T 3dw8_B 240 NTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR 318 (447)
T ss_dssp TEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS
T ss_pred cEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc
Confidence 35667788887 8887543221 5778899999999999998 999999985 66
Q ss_pred eeeeeeee
Q psy14042 197 FMNKVSMW 204 (238)
Q Consensus 197 ~~~~~~~~ 204 (238)
.+..+..+
T Consensus 319 ~~~~~~~~ 326 (447)
T 3dw8_B 319 PVETYQVH 326 (447)
T ss_dssp CSCCEESC
T ss_pred ccceeecc
Confidence 66655543
No 322
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=84.18 E-value=4.6 Score=35.09 Aligned_cols=69 Identities=12% Similarity=0.084 Sum_probs=46.6
Q ss_pred EeecccCc-eeeecc-----cce--------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeee----eeeeecCCC
Q psy14042 148 IVGSVDGN-RIWGKE-----FKK--------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMN----KVSMWSGPG 208 (238)
Q Consensus 148 ~~~~~~g~-rv~g~~-----~~~--------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~----~~~~~~~~~ 208 (238)
+.++.+|. ++|.-. ..+ ..+..+.|+|++..+..|..+|.|++||.. |.... .+.-+
T Consensus 119 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h---- 194 (450)
T 2vdu_B 119 ACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGH---- 194 (450)
T ss_dssp EEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEEC----
T ss_pred EEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecc----
Confidence 56667776 777644 111 145678999999999999999999999974 33322 22222
Q ss_pred CCceeEEEEEeecC
Q psy14042 209 SEMGEIAALKYYLN 222 (238)
Q Consensus 209 ~~~~~i~~~~w~~~ 222 (238)
...|.++.|...
T Consensus 195 --~~~v~~~~~sp~ 206 (450)
T 2vdu_B 195 --VSMLTDVHLIKD 206 (450)
T ss_dssp --SSCEEEEEEEEC
T ss_pred --cCceEEEEEcCC
Confidence 346777777765
No 323
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=84.14 E-value=5.7 Score=36.12 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=37.0
Q ss_pred ceEEeecccCc-eeeecccc--------------------eeeeEEEEeCCCCCeEEEEeeCceEEEEeCC
Q psy14042 145 SAVIVGSVDGN-RIWGKEFK--------------------KTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE 194 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~~--------------------~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~ 194 (238)
.....++.||. ++|.-.-. ...+..+.|+++ ..+..|+.+|.|.+||..
T Consensus 226 ~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~ 295 (524)
T 2j04_B 226 GCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLT 295 (524)
T ss_dssp CEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETT
T ss_pred ceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECC
Confidence 35566788887 88864211 025778999986 479999999999999997
No 324
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=84.01 E-value=4.3 Score=39.53 Aligned_cols=75 Identities=11% Similarity=0.248 Sum_probs=48.6
Q ss_pred EEeecccCc-eeeecccce--------eeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeec------CCCCCc
Q psy14042 147 VIVGSVDGN-RIWGKEFKK--------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWS------GPGSEM 211 (238)
Q Consensus 147 ~~~~~~~g~-rv~g~~~~~--------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~------~~~~~~ 211 (238)
.+.++.+|. ++|.-+-.+ ..+..+.|+|++..+..|+.+|.|++||..+..+....++. ......
T Consensus 72 L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~ 151 (902)
T 2oaj_A 72 LVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL 151 (902)
T ss_dssp EEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC
T ss_pred EEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC
Confidence 344556666 777543211 15678899999999999999999999999876543332210 011123
Q ss_pred eeEEEEEeec
Q psy14042 212 GEIAALKYYL 221 (238)
Q Consensus 212 ~~i~~~~w~~ 221 (238)
.+|.+|.|..
T Consensus 152 ~~V~sl~~sp 161 (902)
T 2oaj_A 152 SPIVSIQWNP 161 (902)
T ss_dssp CCCCEEEEET
T ss_pred CCeEEEEEcc
Confidence 4677777765
No 325
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=83.26 E-value=7 Score=31.37 Aligned_cols=51 Identities=10% Similarity=0.236 Sum_probs=39.8
Q ss_pred eeEEEEeCCCCCeEEEEe--eCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 166 SMLGVQWTSDSQNLLFAI--KGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~--~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
.+....|++++..+.+++ .+|.|++||.. |..+..+.-| ..+|.+|.|...
T Consensus 242 ~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH------~~~V~~l~~spd 295 (318)
T 4ggc_A 242 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH------TSRVLSLTMSPD 295 (318)
T ss_dssp CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC------SSCEEEEEECTT
T ss_pred eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC------CCCEEEEEEcCC
Confidence 456778999999998876 78999999984 7777666544 457999999754
No 326
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=83.14 E-value=2.1 Score=38.29 Aligned_cols=50 Identities=18% Similarity=0.359 Sum_probs=37.6
Q ss_pred eEEEEeCC--CCCeEEEEeeCceEEEEeCC-C--------CeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 167 MLGVQWTS--DSQNLLFAIKGGQVHLYDYE-G--------NFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 167 ~~~~~~~~--~~~~~~~g~~~g~~~~~d~~-g--------~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
+....|+| ++..+..|..+|.|++||.. | ..+..+.-+ ..+|.++.|...
T Consensus 67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~s~~ 127 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL------AGPISDISWDFE 127 (615)
T ss_dssp EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC------SSCEEEEEECTT
T ss_pred EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcc------cccEEEEEEeCC
Confidence 88999999 99999999999999999993 4 333333322 346777777654
No 327
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=82.90 E-value=2.9 Score=36.37 Aligned_cols=53 Identities=9% Similarity=0.143 Sum_probs=42.7
Q ss_pred eeEEEEeCCCCCeEEEEeeCc---eEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeecCCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGG---QVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLNRT 224 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g---~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~~~ 224 (238)
.+....|+|+++.++++..++ .|++||.+|.....+.-+ ...|-++.|-.-.+
T Consensus 355 ~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~------~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 355 LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT------DGQVKFPAWSPYLH 410 (415)
T ss_dssp SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS------SSEEEEEEECCCCC
T ss_pred CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCC------CCCCcCCccccccc
Confidence 356789999999999998887 899999999887766544 45788999976554
No 328
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=82.62 E-value=3 Score=36.34 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=37.7
Q ss_pred eeEEEEeCCCCCeE-EEEeeCceEEEEeCC---CCeeeeeeeecCCCCCceeEEEEEeec
Q psy14042 166 SMLGVQWTSDSQNL-LFAIKGGQVHLYDYE---GNFMNKVSMWSGPGSEMGEIAALKYYL 221 (238)
Q Consensus 166 ~~~~~~~~~~~~~~-~~g~~~g~~~~~d~~---g~~~~~~~~~~~~~~~~~~i~~~~w~~ 221 (238)
.+..+.|+|++..+ ..|..+|.|++||.. |..+..+..+.. ...|.++.|..
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~v~~~~~sp 159 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCF----SKRPNAISIAE 159 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEEC----SSCEEEEEECT
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccC----CCCceEEEEcC
Confidence 68899999999996 788899999999976 556665553321 23455666654
No 329
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=82.37 E-value=3.6 Score=37.67 Aligned_cols=52 Identities=10% Similarity=0.051 Sum_probs=35.8
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecCCCCCceeEEEEEeec
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMGEIAALKYYL 221 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~~i~~~~w~~ 221 (238)
.+..+.|+|++..+.-|..+|.|+|||. .|....+..+... ..+|.++.|..
T Consensus 61 ~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~----~~~v~~v~fs~ 113 (611)
T 1nr0_A 61 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF----SGPVKDISWDS 113 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECS----SSCEEEEEECT
T ss_pred ceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeeccc----CCceEEEEECC
Confidence 5788899999999999999999999997 3443322222211 23455565553
No 330
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=80.93 E-value=3.2 Score=40.40 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=37.2
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeec
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYL 221 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~ 221 (238)
.+..+.|+|++..+..|+.+|.|+|||..+...... + . ...+|.++.|..
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~-~---~--~~~~V~~l~fsp 68 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK-L---E--DRSAIKEMRFVK 68 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE-C---S--SCCCEEEEEEET
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE-c---C--CCCCEEEEEEcC
Confidence 788999999999999999999999999876543211 1 1 134677777765
No 331
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=80.79 E-value=8.4 Score=33.16 Aligned_cols=69 Identities=12% Similarity=0.280 Sum_probs=46.1
Q ss_pred cceEEeecccCc-eeeecccce---------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCce
Q psy14042 144 ASAVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMG 212 (238)
Q Consensus 144 ~~~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~ 212 (238)
....+.++.+|. ++|...-.+ ..+....|+ +..+..|..+|.|++||.. |..+..+.-+ ..
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h------~~ 200 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGH------TS 200 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCC------SS
T ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCC------CC
Confidence 345567788888 888754221 134556665 5689999999999999975 6555555433 34
Q ss_pred eEEEEEee
Q psy14042 213 EIAALKYY 220 (238)
Q Consensus 213 ~i~~~~w~ 220 (238)
+|.++.|.
T Consensus 201 ~v~~~~~~ 208 (445)
T 2ovr_B 201 TVRCMHLH 208 (445)
T ss_dssp CEEEEEEE
T ss_pred cEEEEEec
Confidence 67777774
No 332
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=80.70 E-value=3.2 Score=36.24 Aligned_cols=47 Identities=23% Similarity=0.468 Sum_probs=35.0
Q ss_pred EEeecccCc-eeeecccce---e------eeE-EEEeCCCCCeEEEEeeCceEEEEeC
Q psy14042 147 VIVGSVDGN-RIWGKEFKK---T------SML-GVQWTSDSQNLLFAIKGGQVHLYDY 193 (238)
Q Consensus 147 ~~~~~~~g~-rv~g~~~~~---~------~~~-~~~~~~~~~~~~~g~~~g~~~~~d~ 193 (238)
.+.++.||. ++|.-.-.+ + .+. .+.|+|+++.+.-|..+|.|+|||.
T Consensus 298 lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 298 AAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 345677887 888654321 0 122 4689999999999999999999984
No 333
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=80.62 E-value=8.2 Score=33.11 Aligned_cols=67 Identities=15% Similarity=0.318 Sum_probs=46.9
Q ss_pred ecccCc-eeeecccce--------eeeEEEEeCCCCCeEEEEe--eCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEE
Q psy14042 150 GSVDGN-RIWGKEFKK--------TSMLGVQWTSDSQNLLFAI--KGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAAL 217 (238)
Q Consensus 150 ~~~~g~-rv~g~~~~~--------~~~~~~~~~~~~~~~~~g~--~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~ 217 (238)
++.||. ++|...-.. ..+....|++++..+..++ .+|.|+|||.. |..+..+.-| ..+|.+|
T Consensus 297 gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH------~~~V~~l 370 (420)
T 4gga_A 297 GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH------TSRVLSL 370 (420)
T ss_dssp CTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC------SSCEEEE
T ss_pred ecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC------CCCEEEE
Confidence 456776 777543211 2556778999999999876 68999999984 7767666544 4468888
Q ss_pred EeecC
Q psy14042 218 KYYLN 222 (238)
Q Consensus 218 ~w~~~ 222 (238)
.|...
T Consensus 371 ~~spd 375 (420)
T 4gga_A 371 TMSPD 375 (420)
T ss_dssp EECTT
T ss_pred EEcCC
Confidence 88653
No 334
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=80.41 E-value=3.6 Score=40.79 Aligned_cols=51 Identities=10% Similarity=0.193 Sum_probs=40.1
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
.+..+.|+|++..+..|..+|.|++||.. |..+..+.-+ ..+|.++.|...
T Consensus 617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h------~~~v~~~~~s~~ 668 (1249)
T 3sfz_A 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH------EDEVLCCAFSSD 668 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC------SSCEEEEEECTT
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccC------CCCEEEEEEecC
Confidence 78889999999999999999999999984 6666665533 345667776543
No 335
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=80.03 E-value=3.9 Score=34.55 Aligned_cols=49 Identities=20% Similarity=0.446 Sum_probs=37.2
Q ss_pred eEEeecccCc--eeeecc------------cceeeeEEEEeCCCCCeEEEEeeCceEEEEeCCC
Q psy14042 146 AVIVGSVDGN--RIWGKE------------FKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYEG 195 (238)
Q Consensus 146 ~~~~~~~~g~--rv~g~~------------~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g 195 (238)
..+.++.||. ++|... .. ..+..+.|+|++..+..|..+|.|++||...
T Consensus 209 ~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~-~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 209 MVATCSQDGTIIRVFKTEDGVLVREFRRGLDR-ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp EEEEEETTCSEEEEEETTTCCEEEEEECTTCC-SCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred EEEEEeCCCCEEEEEECCCCcEEEEEEcCCCC-CcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence 3456677773 777543 12 2567789999999999999999999999853
No 336
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=79.58 E-value=2 Score=36.70 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=40.7
Q ss_pred eEEeecccCc-eeeecc----cce------eeeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeee
Q psy14042 146 AVIVGSVDGN-RIWGKE----FKK------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMN 199 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~----~~~------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~ 199 (238)
....++.||. ++|..+ +.. ..+..+.|+||++.+.-|+.+|.|+|||--.++..
T Consensus 283 ~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~ 347 (365)
T 4h5i_A 283 LAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYAN 347 (365)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTTC
T ss_pred ceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcC
Confidence 4456778887 888643 111 14678899999999999999999999997655543
No 337
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=79.53 E-value=5.9 Score=32.07 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=33.6
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSG 206 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~ 206 (238)
......|+|+++.++.+..+|+|++||. .|..+..+....+
T Consensus 281 ~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 281 SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred ceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 3456789999999999999999999997 4777777776644
No 338
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=79.36 E-value=5.6 Score=31.22 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=27.3
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCC-Cee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEG-NFM 198 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g-~~~ 198 (238)
.+....|+|+++.+.++. +|.|++||..+ ...
T Consensus 43 ~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 43 LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 678899999999998876 89999999977 443
No 339
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=78.06 E-value=7 Score=33.90 Aligned_cols=36 Identities=11% Similarity=0.337 Sum_probs=29.1
Q ss_pred eeEEEEeCCCCCeEEEEeeCc---eEEEEeCCCCeeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGG---QVHLYDYEGNFMNKV 201 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g---~~~~~d~~g~~~~~~ 201 (238)
.+....|+|+++.+.++..++ .|++||..+.....+
T Consensus 180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l 218 (415)
T 2hqs_A 180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV 218 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE
T ss_pred cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEe
Confidence 677889999999999999875 999999875544333
No 340
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=76.24 E-value=8.6 Score=34.93 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=48.2
Q ss_pred eEEeecccCc-eeeecccc--------e---eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCce
Q psy14042 146 AVIVGSVDGN-RIWGKEFK--------K---TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMG 212 (238)
Q Consensus 146 ~~~~~~~~g~-rv~g~~~~--------~---~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~ 212 (238)
..+.++.||. ++|.-+-. . ..+..+.|+|++..+..|..++.|++||.. |..+..+.-+ ..
T Consensus 325 ~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH------~~ 398 (524)
T 2j04_B 325 VVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR------ET 398 (524)
T ss_dssp EEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEEC------SS
T ss_pred EEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecC------CC
Confidence 5567788998 99985321 0 024568999999999999999999999975 4433433333 34
Q ss_pred eEEEEEeec
Q psy14042 213 EIAALKYYL 221 (238)
Q Consensus 213 ~i~~~~w~~ 221 (238)
+|-++.|..
T Consensus 399 ~V~sva~Sp 407 (524)
T 2j04_B 399 TITAIGVSR 407 (524)
T ss_dssp CEEEEECCS
T ss_pred ceEEEEeCC
Confidence 567777754
No 341
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=75.68 E-value=15 Score=30.55 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=35.3
Q ss_pred eeEEEEeCCCCCeEE-EEeeCceEEEEeC-CCCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 166 SMLGVQWTSDSQNLL-FAIKGGQVHLYDY-EGNFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~-~g~~~g~~~~~d~-~g~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
.+..+.|+|++..++ .|..+|.|++||. .|..+..+... ..+.++.|...
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-------~~v~~~~~spd 84 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-------SSPQGVAVSPD 84 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-------SSEEEEEECTT
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-------CCccceEECCC
Confidence 456789999999875 4558999999997 46666555433 15666666543
No 342
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=75.57 E-value=6.3 Score=34.63 Aligned_cols=52 Identities=4% Similarity=0.205 Sum_probs=36.3
Q ss_pred eeEEEEeCCC-CCeEEEEeeCceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 166 SMLGVQWTSD-SQNLLFAIKGGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 166 ~~~~~~~~~~-~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
.+..+.|+|+ +.++..|+.+|.|++||...... .+... .....|.++.|...
T Consensus 151 ~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-~~~~~----~~~~~v~~v~wspd 203 (434)
T 2oit_A 151 MVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-VCATL----PSTVAVTSVCWSPK 203 (434)
T ss_dssp SEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-EEEEE----CGGGCEEEEEECTT
T ss_pred ceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-eeecc----CCCCceeEEEEcCC
Confidence 6888999998 78888899999999999864421 11111 01346777777643
No 343
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=74.81 E-value=21 Score=29.65 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=25.7
Q ss_pred eeEEEEeCCCCCeEEEEe-eCceEEEEeCCCCe
Q psy14042 166 SMLGVQWTSDSQNLLFAI-KGGQVHLYDYEGNF 197 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~-~~g~~~~~d~~g~~ 197 (238)
.+....|+|++..++++. .+|.|++||.....
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~ 107 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT 107 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEECCCCe
Confidence 567889999999887665 56999999987543
No 344
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=73.49 E-value=6.5 Score=32.08 Aligned_cols=38 Identities=5% Similarity=0.113 Sum_probs=31.2
Q ss_pred eEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeee
Q psy14042 167 MLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMW 204 (238)
Q Consensus 167 ~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~ 204 (238)
.....|+|+++.++.+..+|.|.+||.. |..+..+.+.
T Consensus 297 ~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 297 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp CCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred ccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 4567899999999999999999999985 6667666654
No 345
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=73.25 E-value=17 Score=31.15 Aligned_cols=67 Identities=16% Similarity=0.318 Sum_probs=42.7
Q ss_pred ceEEeecccCc-eeeecccce------------eeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCC
Q psy14042 145 SAVIVGSVDGN-RIWGKEFKK------------TSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSE 210 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~~~------------~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~ 210 (238)
+..+.++.+|. ++|.-.-.. ..+..+.| ++..+..|..+|.|++||.. |..+..+.-+
T Consensus 224 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------ 295 (435)
T 1p22_A 224 GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH------ 295 (435)
T ss_dssp TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECC------
T ss_pred CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCC------
Confidence 45566777777 777543211 13445566 67788889999999999964 6666655533
Q ss_pred ceeEEEEEe
Q psy14042 211 MGEIAALKY 219 (238)
Q Consensus 211 ~~~i~~~~w 219 (238)
..+|.++.|
T Consensus 296 ~~~v~~~~~ 304 (435)
T 1p22_A 296 KRGIACLQY 304 (435)
T ss_dssp SSCEEEEEE
T ss_pred CCcEEEEEe
Confidence 335666666
No 346
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=71.92 E-value=10 Score=31.50 Aligned_cols=63 Identities=8% Similarity=0.022 Sum_probs=45.2
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEE-EEEEeccCCCcccccHHHHHHHHHhCCCeEEE
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAI-IVANKIDLARARAVSSQDAKNLAASFKVKFIE 97 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~pii-lVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~e 97 (238)
.+|.+|+|...+..++..+...++.+.......+.+++ +|.|+.+-. ...+.+.+.++.+++.
T Consensus 179 ~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-------~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 179 HADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-------DEVDRFCKETNFRRLA 242 (307)
T ss_dssp TCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------HHHHHHHHHHTCCEEE
T ss_pred HCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-------HHHHHHHHHcCCCcee
Confidence 78999998877888899998888888765323556655 899999832 2455556666766553
No 347
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=70.81 E-value=6.4 Score=33.69 Aligned_cols=51 Identities=16% Similarity=0.339 Sum_probs=37.7
Q ss_pred ceEEeecccCc-eeeecccce---------eeeEEEEeCCCCC-eEEEEeeCceEEEEeCCC
Q psy14042 145 SAVIVGSVDGN-RIWGKEFKK---------TSMLGVQWTSDSQ-NLLFAIKGGQVHLYDYEG 195 (238)
Q Consensus 145 ~~~~~~~~~g~-rv~g~~~~~---------~~~~~~~~~~~~~-~~~~g~~~g~~~~~d~~g 195 (238)
.....++.|+. |+|.-.-.. ..+..+.|+|++. .+..|..+|.|++||...
T Consensus 157 ~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t 218 (393)
T 4gq1_A 157 QVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL 218 (393)
T ss_dssp EEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred CEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCC
Confidence 34556788888 999632111 1456789999885 788999999999999753
No 348
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=70.48 E-value=36 Score=28.66 Aligned_cols=36 Identities=19% Similarity=0.478 Sum_probs=28.1
Q ss_pred eeEEEEeCCCCCeEEEEe--------eCceEEEEeCC-CCeeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAI--------KGGQVHLYDYE-GNFMNKV 201 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~--------~~g~~~~~d~~-g~~~~~~ 201 (238)
.+....|+|+++.++.+. .+|.|++||.. |..+..+
T Consensus 255 ~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~ 299 (433)
T 3bws_A 255 LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI 299 (433)
T ss_dssp EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec
Confidence 456789999999999998 58999999975 5444433
No 349
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=70.09 E-value=8.2 Score=35.97 Aligned_cols=38 Identities=8% Similarity=0.281 Sum_probs=29.9
Q ss_pred eeEEEEeCCCCCeEEEEeeCc-----eEEEEeCCCCeeeeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGG-----QVHLYDYEGNFMNKVSM 203 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g-----~~~~~d~~g~~~~~~~~ 203 (238)
.+....||||++.+.|+...+ +|+++|..|.-.....+
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~ 168 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL 168 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc
Confidence 567889999999999988765 99999997665444333
No 350
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=70.06 E-value=9.1 Score=32.49 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=35.8
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeecCCCCCceeEEEEEeec
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWSGPGSEMGEIAALKYYL 221 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~~~~w~~ 221 (238)
.+..+.|++++.++..+..+|.|++||.. |..+..+..+ ...+.++.|..
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~------~~~~~~~~~~~ 221 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLT------GKWSKILLYDP 221 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECS------SSSEEEEEEET
T ss_pred ceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCC------CCCeeEEEEcC
Confidence 55668999999999999999999999975 5555555422 23455555553
No 351
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=69.57 E-value=2.5 Score=38.74 Aligned_cols=77 Identities=10% Similarity=0.047 Sum_probs=46.0
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCE-EEEEEeccCCCcccccHHHHHHHHHhCCCeE----------
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPA-IIVANKIDLARARAVSSQDAKNLAASFKVKF---------- 95 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~pi-ilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~---------- 95 (238)
.+|.+++|.|. .... .+ .....+.. ..|+ ++|.||.|....... ........+.|+
T Consensus 213 ~pd~vllVvDa~~g~~--~~-~~a~~~~~-----~~~i~gvVlNK~D~~~~~g~----~l~~~~~~g~PI~fig~ge~~~ 280 (504)
T 2j37_W 213 QPDNIVYVMDASIGQA--CE-AQAKAFKD-----KVDVASVIVTKLDGHAKGGG----ALSAVAATKSPIIFIGTGEHID 280 (504)
T ss_dssp CCSEEEEEEETTCCTT--HH-HHHHHHHH-----HHCCCCEEEECTTSCCCCTH----HHHHHHHHCCCEEEEECSSSTT
T ss_pred cCceEEEEEecccccc--HH-HHHHHHHh-----hcCceEEEEeCCccccchHH----HHHHHHHhCCCeEEeccccchh
Confidence 67899999998 4222 11 12222222 2574 889999998743221 111223333332
Q ss_pred --------EEEccCCCCC-HHHHHHHHHHH
Q psy14042 96 --------IEVSVGIHHN-VDELLVGILNQ 116 (238)
Q Consensus 96 --------~evSA~t~~g-v~elf~~i~~~ 116 (238)
+.+|+.+|.| ++++++.+.+.
T Consensus 281 dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 281 DFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred hhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 3468999999 99998888754
No 352
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=66.77 E-value=12 Score=32.17 Aligned_cols=34 Identities=21% Similarity=0.516 Sum_probs=22.8
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKV 201 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~ 201 (238)
.+....|+ +..+..|..+|.|++||.. |..+..+
T Consensus 364 ~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 364 AVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeee
Confidence 56667774 4677777778888888753 5555544
No 353
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=64.50 E-value=23 Score=27.63 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=44.1
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEE
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFI 96 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~ 96 (238)
.+|.+|++...+..++..+...++.+.+.. +.++.+|.|+.|-... ....+..+..++++.+++
T Consensus 90 ~aD~viiv~~~~~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~~--~~~~~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 90 GCDLLVIPSTPDALALDALMLTIETLQKLG---NNRFRILLTIIPPYPS--KDGDEARQLLTTAGLPLF 153 (209)
T ss_dssp TSSEEEEEECSSHHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTTS--CHHHHHHHHHHHTTCCBC
T ss_pred HCCEEEEEecCCchhHHHHHHHHHHHHhcc---CCCEEEEEEecCCccc--hHHHHHHHHHHHcCCchh
Confidence 789998888878888888888888877632 5668899999986430 112344444445665544
No 354
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=64.07 E-value=8.2 Score=35.74 Aligned_cols=29 Identities=38% Similarity=0.843 Sum_probs=25.9
Q ss_pred eEEEEeCCCCCeEEEEeeCceEEEEeCCCC
Q psy14042 167 MLGVQWTSDSQNLLFAIKGGQVHLYDYEGN 196 (238)
Q Consensus 167 ~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~ 196 (238)
+..+.||||++.+.++.. |+|++||..|.
T Consensus 111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~ 139 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQE 139 (741)
T ss_dssp SCCCEECTTSSEEEEEET-TEEEEEESSSC
T ss_pred cceeEECCCCCEEEEEeC-CcEEEEECCCC
Confidence 567899999999999986 99999999876
No 355
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=63.86 E-value=25 Score=27.29 Aligned_cols=50 Identities=12% Similarity=0.268 Sum_probs=31.6
Q ss_pred eEEEEeCCCCCeEE-EEeeCceEEEEe--CCCCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 167 MLGVQWTSDSQNLL-FAIKGGQVHLYD--YEGNFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 167 ~~~~~~~~~~~~~~-~g~~~g~~~~~d--~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
+....|+|+++.++ .+..+|.+.||+ ..+.....+.-+ ...+.++.|...
T Consensus 131 ~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~s~d 183 (297)
T 2ojh_A 131 SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG------EGRNDGPDYSPD 183 (297)
T ss_dssp EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS------SSCEEEEEECTT
T ss_pred ccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC------CCccccceECCC
Confidence 45568999999877 577889888877 444443333211 235666777543
No 356
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=63.38 E-value=11 Score=33.08 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=41.8
Q ss_pred CCCEEEEEEeccCC--CcccccHHHHHHHHHhCC--CeEEEEccCC---------------------CCCHHHHHHHHHH
Q psy14042 61 TRPAIIVANKIDLA--RARAVSSQDAKNLAASFK--VKFIEVSVGI---------------------HHNVDELLVGILN 115 (238)
Q Consensus 61 ~~piilVgNK~DL~--~~~~v~~~~~~~~~~~~~--~~~~evSA~t---------------------~~gv~elf~~i~~ 115 (238)
..|++.+.|+.|-. .......+.++++++..+ .+++.+||+. ..|++.+.....+
T Consensus 224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~~ 303 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYN 303 (392)
T ss_dssp GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 47999999999842 112223456777777765 7899999986 6788888887765
Q ss_pred HHH
Q psy14042 116 QIR 118 (238)
Q Consensus 116 ~l~ 118 (238)
.+.
T Consensus 304 ~L~ 306 (392)
T 1ni3_A 304 ALN 306 (392)
T ss_dssp HTT
T ss_pred HhC
Confidence 553
No 357
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=62.79 E-value=12 Score=32.83 Aligned_cols=55 Identities=35% Similarity=0.414 Sum_probs=39.3
Q ss_pred CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHhhh
Q psy14042 60 RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121 (238)
Q Consensus 60 ~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~~~ 121 (238)
...|.+++.||+|... .++.+.+.+ .-.++++|+..+.|++.+...+.+.+...+
T Consensus 248 ~~~p~i~v~nKid~~~-----~eele~l~~--~~~~~~is~~~e~gLd~Li~~~y~~L~Li~ 302 (376)
T 4a9a_A 248 RYMPAIYVLNKIDSLS-----IEELELLYR--IPNAVPISSGQDWNLDELLQVMWDRLNLVR 302 (376)
T ss_dssp EEECEEEEEECGGGSC-----HHHHHHHTT--STTEEECCTTTCTTHHHHHHHHHHHHCCEE
T ss_pred hccceEEEEecccccC-----HHHHHHHhc--ccchhhhhhhhcccchhHHHHHHHHcCCcE
Confidence 4579999999999643 223333221 224788999999999999998888775443
No 358
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=62.25 E-value=29 Score=28.25 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=33.4
Q ss_pred eeEEEEeCCCCCeEEEEeeC-----ceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeecC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKG-----GQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~-----g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~~ 222 (238)
.+....|+||++.+.|.... .+|+++|..|....++.-. .. +.++.|...
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~------~~-~~~~~wspd 114 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA------KN-IRSLEWNED 114 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE------SE-EEEEEECTT
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC------CC-ccceeECCC
Confidence 45668999999988887754 2588889877655444322 11 666777543
No 359
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=62.03 E-value=4.2 Score=21.01 Aligned_cols=16 Identities=13% Similarity=0.447 Sum_probs=13.2
Q ss_pred ceEEEEeCCCCeeeee
Q psy14042 186 GQVHLYDYEGNFMNKV 201 (238)
Q Consensus 186 g~~~~~d~~g~~~~~~ 201 (238)
..-.|||.+|+++..|
T Consensus 5 ~ss~IYD~~g~~i~~l 20 (26)
T 2v2f_A 5 TSSKIYDNKNQLIADL 20 (26)
T ss_pred CCCEEEeCCCCEeeec
Confidence 3458999999999876
No 360
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=61.97 E-value=32 Score=28.36 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=24.7
Q ss_pred eEEEEeCCCCCeEEEEe-eCceEEEEeCCCC
Q psy14042 167 MLGVQWTSDSQNLLFAI-KGGQVHLYDYEGN 196 (238)
Q Consensus 167 ~~~~~~~~~~~~~~~g~-~~g~~~~~d~~g~ 196 (238)
.....|+|+++.++++. .+++|.+||..+.
T Consensus 213 ~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g 243 (361)
T 3scy_A 213 PRHLIFNSDGKFAYLINEIGGTVIAFRYADG 243 (361)
T ss_dssp EEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred CeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence 45678999999888887 6899999998533
No 361
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=57.10 E-value=42 Score=27.18 Aligned_cols=51 Identities=8% Similarity=0.128 Sum_probs=40.1
Q ss_pred ccCceeeecccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeee
Q psy14042 152 VDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSM 203 (238)
Q Consensus 152 ~~g~rv~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~ 203 (238)
.+|..+|--.... ........+++.++..+..++.|..+|.+ |+++.++.-
T Consensus 153 ~~G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 153 PNGQLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA 204 (276)
T ss_dssp TTSCEEEEEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred CCCCEEEEEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence 3477777766553 45556778899999999999999999999 999888763
No 362
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=56.76 E-value=20 Score=28.88 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=24.6
Q ss_pred eeEEEEeCCCCCeEEEEeeC-ceEEEEeCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKG-GQVHLYDYE 194 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~-g~~~~~d~~ 194 (238)
.+..+.|+|+++.++++..+ |.|.+||-+
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~ 68 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 68 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEECCCCCEEEEeecCCCeEEEEEec
Confidence 45567899999999988887 999999875
No 363
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=56.14 E-value=19 Score=28.88 Aligned_cols=35 Identities=6% Similarity=0.173 Sum_probs=28.2
Q ss_pred eeEEEEeCCCCC-eEEEEeeCceEEEEeCCCCeeeee
Q psy14042 166 SMLGVQWTSDSQ-NLLFAIKGGQVHLYDYEGNFMNKV 201 (238)
Q Consensus 166 ~~~~~~~~~~~~-~~~~g~~~g~~~~~d~~g~~~~~~ 201 (238)
......|+|+++ ++..++.+|.|+.||..|. ...+
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~ 64 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPE 64 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEE
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEE
Confidence 456788999998 7788899999999999887 4433
No 364
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=56.12 E-value=13 Score=28.40 Aligned_cols=65 Identities=14% Similarity=-0.036 Sum_probs=41.9
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcC-CCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEE
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGY-LRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFI 96 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~ 96 (238)
.+|.+|++...+..+ ..+...++.+.+... ..+.++.+|.|+.|-... . ..+..+..++++.+++
T Consensus 97 ~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~--~-~~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 97 VSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT--M-LNVLKESIKDTGVKAF 162 (206)
T ss_dssp HCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE--E-EHHHHHHHHHHTCCBC
T ss_pred HCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch--H-HHHHHHHHHHcCCcee
Confidence 789999888877777 788888877765432 145678999999985322 1 1233444444554443
No 365
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=55.97 E-value=46 Score=26.92 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=42.9
Q ss_pred eEEeecccCceeeecccc-eeeeEEEEeCCCCCeEEEEee-CceEEEEeCCCCeeeeeeee
Q psy14042 146 AVIVGSVDGNRIWGKEFK-KTSMLGVQWTSDSQNLLFAIK-GGQVHLYDYEGNFMNKVSMW 204 (238)
Q Consensus 146 ~~~~~~~~g~rv~g~~~~-~~~~~~~~~~~~~~~~~~g~~-~g~~~~~d~~g~~~~~~~~~ 204 (238)
+..+.. +|..+|--... ...+....+.++++++..... ++.|+.+|.+|..+.++.+.
T Consensus 58 V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~ 117 (276)
T 3no2_A 58 AKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFE 117 (276)
T ss_dssp EEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEEC
T ss_pred EEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEecc
Confidence 334444 67777765543 125566778999999888887 99999999999998887764
No 366
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=55.50 E-value=26 Score=28.16 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=24.5
Q ss_pred eEEEEeCCCCCeEEEEe-eCceEEEEeCCC
Q psy14042 167 MLGVQWTSDSQNLLFAI-KGGQVHLYDYEG 195 (238)
Q Consensus 167 ~~~~~~~~~~~~~~~g~-~~g~~~~~d~~g 195 (238)
+..+.|+|+++.++++. .+|.|++||...
T Consensus 131 ~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 131 CHSANISPDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp BCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence 44578999999998887 899999999753
No 367
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=55.23 E-value=54 Score=31.95 Aligned_cols=38 Identities=8% Similarity=0.285 Sum_probs=30.6
Q ss_pred eeEEEEeCCCCCeEEEEeeC------ceEEEEeCCCCeeeeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKG------GQVHLYDYEGNFMNKVSM 203 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~------g~~~~~d~~g~~~~~~~~ 203 (238)
.+....||||++.+.|+... ++|++||..|.....+.-
T Consensus 54 ~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~ 97 (1045)
T 1k32_A 54 VINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY 97 (1045)
T ss_dssp EEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC
T ss_pred cccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEccc
Confidence 67889999999999998654 489999998876655543
No 368
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=54.71 E-value=10 Score=33.64 Aligned_cols=62 Identities=13% Similarity=0.144 Sum_probs=40.5
Q ss_pred CCCCEEEEEEeccCC-------CcccccH----HHHHHHH----HhCC---CeEEEEcc--CCCCCHHHHHHHHHHHHHh
Q psy14042 60 RTRPAIIVANKIDLA-------RARAVSS----QDAKNLA----ASFK---VKFIEVSV--GIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 60 ~~~piilVgNK~DL~-------~~~~v~~----~~~~~~~----~~~~---~~~~evSA--~t~~gv~elf~~i~~~l~~ 119 (238)
.+.|+++|.||.|+. .-+.... +.++++. .+.| ...+.+|+ ..+.|++++.+.+.+.+++
T Consensus 174 ~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 174 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 468999999999973 1111112 2233333 2222 35788999 6667899999999988866
Q ss_pred hh
Q psy14042 120 KR 121 (238)
Q Consensus 120 ~~ 121 (238)
.+
T Consensus 254 g~ 255 (413)
T 1tq4_A 254 YK 255 (413)
T ss_dssp GG
T ss_pred ch
Confidence 55
No 369
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=53.99 E-value=11 Score=34.91 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=27.7
Q ss_pred eEEEEeCCCCCeEEEEee---------CceEEEEeCCCCee
Q psy14042 167 MLGVQWTSDSQNLLFAIK---------GGQVHLYDYEGNFM 198 (238)
Q Consensus 167 ~~~~~~~~~~~~~~~g~~---------~g~~~~~d~~g~~~ 198 (238)
+..+.||||++.+.++.. +++|++||..+...
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~ 102 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF 102 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc
Confidence 567899999999999987 79999999976655
No 370
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=53.66 E-value=17 Score=34.07 Aligned_cols=34 Identities=9% Similarity=0.081 Sum_probs=27.6
Q ss_pred eeEEEEeCCCCCeEEEEeeC-----ceEEEEeCCCCeee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKG-----GQVHLYDYEGNFMN 199 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~-----g~~~~~d~~g~~~~ 199 (238)
.+....||||++.+.|+... .+|+++|..|.-..
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~ 202 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL 202 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC
Confidence 67788999999999998775 57999999765443
No 371
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=53.63 E-value=30 Score=29.76 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=39.5
Q ss_pred eEEEEeCCCCCeEEEEe-eCceEEEEeCCCCeeeeeeeecCC--CCCceeEEEEEee
Q psy14042 167 MLGVQWTSDSQNLLFAI-KGGQVHLYDYEGNFMNKVSMWSGP--GSEMGEIAALKYY 220 (238)
Q Consensus 167 ~~~~~~~~~~~~~~~g~-~~g~~~~~d~~g~~~~~~~~~~~~--~~~~~~i~~~~w~ 220 (238)
-....|.+....+++|. -+|+|..||..|..+..+.+.-.. +.+.....||.|-
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~ 71 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLL 71 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEES
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEe
Confidence 35678988889999999 689999999996655555443222 4445667899993
No 372
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=52.35 E-value=38 Score=27.42 Aligned_cols=35 Identities=14% Similarity=0.310 Sum_probs=27.1
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNK 200 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~ 200 (238)
.+....|++++++...++.+|.|++||..+..+..
T Consensus 46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 46 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred cccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE
Confidence 35677899999866678899999999987654443
No 373
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=51.99 E-value=67 Score=24.99 Aligned_cols=65 Identities=17% Similarity=0.046 Sum_probs=45.6
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEE
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEV 98 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~ev 98 (238)
.+|.+|++...+..++..+...++.+.+.. .....+-+|.|+.+-... ... +.+.+.++.+++.+
T Consensus 140 ~ad~viiv~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~N~~~~~~~--~~~---~~~~~~~~~~v~~~ 204 (245)
T 3ea0_A 140 HLDELCIVTTPSLQSLRRAGQLLKLCKEFE-KPISRIEIILNRADTNSR--ITS---DEIEKVIGRPISKR 204 (245)
T ss_dssp GCSEEEEEECSSHHHHHHHHHHHHHHHTCS-SCCSCEEEEEESTTSCTT--SCH---HHHHHHHTSCEEEE
T ss_pred HCCEEEEEecCcHHHHHHHHHHHHHHHHhC-CCccceEEEEecCCCCCC--CCH---HHHHHHhCCCeEEE
Confidence 789999988878889999998888887543 134567899999985432 222 33445567776654
No 374
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=51.96 E-value=27 Score=31.98 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=27.8
Q ss_pred eEEEEeCCCCCeEEEEe---------------------------------eCceEEEEeCCCCeeeee
Q psy14042 167 MLGVQWTSDSQNLLFAI---------------------------------KGGQVHLYDYEGNFMNKV 201 (238)
Q Consensus 167 ~~~~~~~~~~~~~~~g~---------------------------------~~g~~~~~d~~g~~~~~~ 201 (238)
+..+.|+||++.+.++. .+++|++||..+.....+
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~ 250 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYL 250 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEEC
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEee
Confidence 35778999999999987 557899999987655443
No 375
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=51.67 E-value=20 Score=33.48 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=27.5
Q ss_pred EEeCCCCCeEEEEeeC---------ceEEEEeCCCCeeeeee
Q psy14042 170 VQWTSDSQNLLFAIKG---------GQVHLYDYEGNFMNKVS 202 (238)
Q Consensus 170 ~~~~~~~~~~~~g~~~---------g~~~~~d~~g~~~~~~~ 202 (238)
+.||||++.+.|++.+ |.+++||..+....++.
T Consensus 67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~ 108 (740)
T 4a5s_A 67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEE 108 (740)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS
T ss_pred eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcc
Confidence 7899999999999986 77889999877665543
No 376
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=51.17 E-value=20 Score=32.15 Aligned_cols=34 Identities=3% Similarity=-0.220 Sum_probs=27.0
Q ss_pred EEEEeCCCCCeEEEEeeC----ceEEEEeCCCCeeeee
Q psy14042 168 LGVQWTSDSQNLLFAIKG----GQVHLYDYEGNFMNKV 201 (238)
Q Consensus 168 ~~~~~~~~~~~~~~g~~~----g~~~~~d~~g~~~~~~ 201 (238)
....||||++.+.++..+ ++|+++|..+.....+
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l 190 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF 190 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEE
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEe
Confidence 456899999999999888 8999999765544444
No 377
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=50.97 E-value=8.1 Score=34.51 Aligned_cols=41 Identities=12% Similarity=0.064 Sum_probs=26.2
Q ss_pred CCCCEEEEEEeccCCCcccccH--HHHHHHHHhCCCeEEEEcc
Q psy14042 60 RTRPAIIVANKIDLARARAVSS--QDAKNLAASFKVKFIEVSV 100 (238)
Q Consensus 60 ~~~piilVgNK~DL~~~~~v~~--~~~~~~~~~~~~~~~evSA 100 (238)
.+.|+|+|.||+|.....++.. ..+.......|+++|.+|.
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 6789999999999865544322 2233323456777777774
No 378
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=50.77 E-value=18 Score=29.96 Aligned_cols=31 Identities=10% Similarity=-0.004 Sum_probs=26.5
Q ss_pred EEeCCCCCeEEEEeeCceEEEEeCCCCeeee
Q psy14042 170 VQWTSDSQNLLFAIKGGQVHLYDYEGNFMNK 200 (238)
Q Consensus 170 ~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~ 200 (238)
..|+||++.+.|+..+++|+++|..|.....
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence 5799999999999999999999997765443
No 379
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=49.96 E-value=53 Score=29.62 Aligned_cols=35 Identities=11% Similarity=0.188 Sum_probs=28.4
Q ss_pred EEEEeCCCCCeEEEEeeCceEEEEeC---CCCeeeeee
Q psy14042 168 LGVQWTSDSQNLLFAIKGGQVHLYDY---EGNFMNKVS 202 (238)
Q Consensus 168 ~~~~~~~~~~~~~~g~~~g~~~~~d~---~g~~~~~~~ 202 (238)
..+.++|+++.++.+..+|.|.+||. .|..+..+.
T Consensus 182 ~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 182 HISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred ceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 45669999999999999999999998 455555444
No 380
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=49.77 E-value=21 Score=33.50 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=45.1
Q ss_pred eEEeecccCceeeecccceeeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecC
Q psy14042 146 AVIVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSG 206 (238)
Q Consensus 146 ~~~~~~~~g~rv~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~ 206 (238)
+..+.-..|..+|-..... ......++..+.++++|+.+|.+++||. .|..+-+.++..+
T Consensus 457 l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~ 517 (689)
T 1yiq_A 457 LIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASG 517 (689)
T ss_dssp EEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred EEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCC
Confidence 4456666788888776653 3333455667889999999999999997 5999988887644
No 381
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=49.58 E-value=30 Score=30.99 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=39.0
Q ss_pred CceEEEEEEEC-C-cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCC
Q psy14042 28 DETGLIIVWML-Y-KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHN 105 (238)
Q Consensus 28 ~ad~~IlV~dv-d-~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~g 105 (238)
.+|.+++|.|. . .+... ....+.. .-.+..+|.||.|...... .+.......+.|+..++. |++
T Consensus 212 ~pd~vlLVvDA~~gq~a~~----~a~~f~~----~~~i~gVIlTKlD~~~~gG----~~ls~~~~~g~PI~fig~--Ge~ 277 (443)
T 3dm5_A 212 HPHEVILVIDGTIGQQAYN----QALAFKE----ATPIGSIIVTKLDGSAKGG----GALSAVAATGAPIKFIGT--GEK 277 (443)
T ss_dssp CCSEEEEEEEGGGGGGHHH----HHHHHHH----SCTTEEEEEECCSSCSSHH----HHHHHHHTTCCCEEEEEC--SSS
T ss_pred cCceEEEEEeCCCchhHHH----HHHHHHh----hCCCeEEEEECCCCccccc----HHHHHHHHHCCCEEEEEc--CCC
Confidence 67888999888 3 22222 2223322 2245678999999865322 234445567888777775 554
Q ss_pred HH
Q psy14042 106 VD 107 (238)
Q Consensus 106 v~ 107 (238)
++
T Consensus 278 vd 279 (443)
T 3dm5_A 278 ID 279 (443)
T ss_dssp TT
T ss_pred hH
Confidence 43
No 382
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=49.14 E-value=80 Score=25.31 Aligned_cols=37 Identities=14% Similarity=0.269 Sum_probs=29.5
Q ss_pred eEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeee
Q psy14042 167 MLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSM 203 (238)
Q Consensus 167 ~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~ 203 (238)
.....|+|+++.++++..+|+|.+||.. |..+..+..
T Consensus 187 ~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~ 224 (353)
T 3vgz_A 187 STGLALDSEGKRLYTTNADGELITIDTADNKILSRKKL 224 (353)
T ss_dssp CCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred cceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEc
Confidence 4556899999999999999999999985 555555444
No 383
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=47.91 E-value=62 Score=25.75 Aligned_cols=65 Identities=11% Similarity=-0.027 Sum_probs=44.0
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCE-EEEEEeccCCCcccccHHHHHHHHHhCCCeEE
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPA-IIVANKIDLARARAVSSQDAKNLAASFKVKFI 96 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~pi-ilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~ 96 (238)
.+|.+|++...+..++..+...+..+.......+.++ -+|.|+.+-.. ..+..+.+.+.++.+++
T Consensus 140 ~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~----~~~~~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 140 KAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN----EYELLDAFAKELGSQLI 205 (269)
T ss_dssp SCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC----CHHHHHHHHHHHTCCEE
T ss_pred hCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcch----hHHHHHHHHHHcCCccc
Confidence 5899998887788888888888888776543234554 68899986322 23445556566666654
No 384
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=47.38 E-value=57 Score=31.79 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=27.1
Q ss_pred eEEEEeCCCCCeEEEEeeCc----------eEEEEeCCCCeeeee
Q psy14042 167 MLGVQWTSDSQNLLFAIKGG----------QVHLYDYEGNFMNKV 201 (238)
Q Consensus 167 ~~~~~~~~~~~~~~~g~~~g----------~~~~~d~~g~~~~~~ 201 (238)
+..+.|+||++.+.++..++ +|++||..+..+..+
T Consensus 423 v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l 467 (1045)
T 1k32_A 423 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 467 (1045)
T ss_dssp CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe
Confidence 45678999999998887654 999999986554433
No 385
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=47.29 E-value=25 Score=32.35 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=28.2
Q ss_pred eeEEEEeCCCCCeEEEEee-Cc-----eEEEEeCCCCee
Q psy14042 166 SMLGVQWTSDSQNLLFAIK-GG-----QVHLYDYEGNFM 198 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~-~g-----~~~~~d~~g~~~ 198 (238)
.+....||||++.+.++.. +| .|++||..+...
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~ 76 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQT 76 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCE
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCce
Confidence 5778899999999999998 88 999999875543
No 386
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=46.72 E-value=23 Score=29.19 Aligned_cols=65 Identities=14% Similarity=0.000 Sum_probs=36.1
Q ss_pred CceEEEEEEECCcchHHHH-HHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccH--HHHHHHHHhCCCeEEE
Q psy14042 28 DETGLIIVWMLYKPSYHRV-EQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSS--QDAKNLAASFKVKFIE 97 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~~~~~~~~~~~~~e 97 (238)
.+.+.+++.|-....+... ...+..+.+ . .++|+|.+|+|.....+... .......+..++++|.
T Consensus 111 Ral~~lllldep~~gL~~lD~~~l~~L~~----~-~~vI~Vi~K~D~lt~~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 111 RVHCCLYFISPTGHSLRPLDLEFMKHLSK----V-VNIIPVIAKADTMTLEEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp SCCEEEEEECCCSSSCCHHHHHHHHHHHT----T-SEEEEEETTGGGSCHHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred eeeeeeEEEecCCCcCCHHHHHHHHHHHh----c-CcEEEEEeccccCCHHHHHHHHHHHHHHHHHcCccccC
Confidence 4577766666421222222 334444432 3 89999999999876543322 2344445566776553
No 387
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=46.48 E-value=39 Score=27.19 Aligned_cols=29 Identities=7% Similarity=0.258 Sum_probs=24.5
Q ss_pred eEEEEeCCCCCeEEEEeeC------------ceEEEEeCCC
Q psy14042 167 MLGVQWTSDSQNLLFAIKG------------GQVHLYDYEG 195 (238)
Q Consensus 167 ~~~~~~~~~~~~~~~g~~~------------g~~~~~d~~g 195 (238)
+....|+|+++.++++..+ ++|.+||...
T Consensus 94 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 134 (349)
T 1jmx_B 94 MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD 134 (349)
T ss_dssp SSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred ccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC
Confidence 4567899999999999876 9999999753
No 388
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=46.27 E-value=34 Score=31.27 Aligned_cols=18 Identities=22% Similarity=0.518 Sum_probs=15.2
Q ss_pred EEEEeCCCCCeEEEEeeC
Q psy14042 168 LGVQWTSDSQNLLFAIKG 185 (238)
Q Consensus 168 ~~~~~~~~~~~~~~g~~~ 185 (238)
..+.||||++.+.++..+
T Consensus 176 ~~~~~SpDg~~la~~~~~ 193 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAIN 193 (723)
T ss_dssp EEEEECTTSSEEEEEEEE
T ss_pred ceEEECCCCCEEEEEEEC
Confidence 568899999999988755
No 389
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=45.82 E-value=41 Score=26.92 Aligned_cols=43 Identities=9% Similarity=0.003 Sum_probs=35.3
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKID 72 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~D 72 (238)
.+|.+|++...+..+...+...++.+.+.. .+.++.+|.|+.+
T Consensus 166 ~aD~vivv~~~~~~s~~~~~~~~~~l~~~~--~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 166 CSDYVIIPMTAEKWAVESLDLFNFFVRKLN--LFLPIFLIITRFK 208 (267)
T ss_dssp TCSEEEEEEESCTTHHHHHHHHHHHHHTTT--CCCCEEEEEEEEC
T ss_pred HCCeEEEEeCCChHHHHHHHHHHHHHHHHh--ccCCEEEEEeccc
Confidence 789999998888888888888888877653 4568889999994
No 390
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=44.65 E-value=24 Score=29.26 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=26.4
Q ss_pred EEEeCCCCCeEEEEeeCceEEEEeCCCCeee
Q psy14042 169 GVQWTSDSQNLLFAIKGGQVHLYDYEGNFMN 199 (238)
Q Consensus 169 ~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~ 199 (238)
...|+||++.++|+..++.++++|..+....
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~ 115 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEEN 115 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCcce
Confidence 4579999999999999999999998765443
No 391
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=44.49 E-value=28 Score=32.59 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=44.9
Q ss_pred ceEEeecccCceeeecccceeeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeec
Q psy14042 145 SAVIVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWS 205 (238)
Q Consensus 145 ~~~~~~~~~g~rv~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~ 205 (238)
.+..+....|..+|-..... .......+.++.++++|+.+|.++++|. .|..+.++.+..
T Consensus 458 ~l~A~D~~tG~~~W~~~~~~-~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 458 RLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp EEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEEeCCCCcEEeecCCCC-CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 34455566777888776653 3334445667889999999999999997 599999888775
No 392
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=44.48 E-value=30 Score=27.88 Aligned_cols=66 Identities=17% Similarity=0.245 Sum_probs=42.7
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEE-EEEEeccCCC-----cccc-cHHHHHHHHHhCCCeEEE
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAI-IVANKIDLAR-----ARAV-SSQDAKNLAASFKVKFIE 97 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~pii-lVgNK~DL~~-----~~~v-~~~~~~~~~~~~~~~~~e 97 (238)
.+|.+|+|...+..+...+...++.+.+ .+.+++ +|.|+.|... ...+ .....+.+.+.++.+++.
T Consensus 152 ~aD~viiv~~~~~~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 224 (262)
T 2ph1_A 152 KPTGVVVVSTPQELTAVIVEKAINMAEE----TNTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGFFT 224 (262)
T ss_dssp CCSEEEEEECSSSCCHHHHHHHHHHHHT----TTCCEEEEEETTCCEECTTTCCEECTTCCCCHHHHHHHTTCSEEE
T ss_pred cCCeEEEEecCccchHHHHHHHHHHHHh----CCCCEEEEEECCCccCCcccccccccccccHHHHHHHHcCCCeEE
Confidence 6788888876677778888777777654 356776 9999987421 1111 112345566677777654
No 393
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=44.47 E-value=40 Score=31.40 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=43.6
Q ss_pred eEEeecccCceeeecccceeeeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeeeeec
Q psy14042 146 AVIVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVSMWS 205 (238)
Q Consensus 146 ~~~~~~~~g~rv~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~~ 205 (238)
+..+....|..+|-..... ..........+.++++|+.+|+++++|.. |..+.+..+..
T Consensus 440 l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 440 LLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS 499 (668)
T ss_dssp EEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCC
Confidence 4445566777778766543 33344555678999999999999999985 99998887753
No 394
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=44.40 E-value=42 Score=27.26 Aligned_cols=36 Identities=19% Similarity=0.394 Sum_probs=27.4
Q ss_pred eEEEEeCCCCCeEEEEee---------------------------CceEEEEeCCCCee-eeee
Q psy14042 167 MLGVQWTSDSQNLLFAIK---------------------------GGQVHLYDYEGNFM-NKVS 202 (238)
Q Consensus 167 ~~~~~~~~~~~~~~~g~~---------------------------~g~~~~~d~~g~~~-~~~~ 202 (238)
+....|+||++.+.|+.. .++|+++|..+... ..+.
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~ 169 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE 169 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec
Confidence 567899999999998874 36899999876554 5444
No 395
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=44.23 E-value=43 Score=31.22 Aligned_cols=36 Identities=8% Similarity=0.110 Sum_probs=29.3
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVS 202 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~ 202 (238)
.+....||||++.+.|+ .++.|+++|..|....++.
T Consensus 113 ~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 113 NTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp TEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECC
T ss_pred cceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEc
Confidence 56788999999999998 6789999999776555543
No 396
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=44.09 E-value=36 Score=31.27 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=27.5
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNK 200 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~ 200 (238)
.+....||||++.+.++. +++|++||..+....+
T Consensus 111 ~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~ 144 (719)
T 1z68_A 111 PIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ 144 (719)
T ss_dssp SBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE
T ss_pred ccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE
Confidence 466789999999999985 8899999997654433
No 397
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=43.48 E-value=88 Score=24.71 Aligned_cols=62 Identities=18% Similarity=0.097 Sum_probs=42.6
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEE
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFI 96 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~ 96 (238)
.+|.+|+|...+..+...+...+..+.+. ...++-+|.|+.|-.... ...+.+.+..+.+++
T Consensus 132 ~ad~vi~v~~~~~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~----~~~~~~~~~~~~~~~ 193 (263)
T 1hyq_A 132 AAQELLLVVNPEISSITDGLKTKIVAERL---GTKVLGVVVNRITTLGIE----MAKNEIEAILEAKVI 193 (263)
T ss_dssp HSSEEEEEECSSHHHHHHHHHHHHHHHHH---TCEEEEEEEEEECTTTHH----HHHHHHHHHTTSCEE
T ss_pred HCCEEEEEeCCChhHHHHHHHHHHHHHhc---CCCeeEEEEccCCccccc----chHHHHHHHhCCCeE
Confidence 78888888777888888888888887764 224456899999864322 334455566676644
No 398
>3pqh_A Gene product 138; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, viral protein; 1.29A {Bacteriophage PHI92}
Probab=43.42 E-value=15 Score=27.02 Aligned_cols=24 Identities=17% Similarity=0.392 Sum_probs=16.2
Q ss_pred CCCeEEEEeeCceEEEEeCCCCeee
Q psy14042 175 DSQNLLFAIKGGQVHLYDYEGNFMN 199 (238)
Q Consensus 175 ~~~~~~~g~~~g~~~~~d~~g~~~~ 199 (238)
+.+....|. .||+-|||.+|..+.
T Consensus 28 d~ryR~~gL-~GEvaiY~~~G~~I~ 51 (127)
T 3pqh_A 28 KQTYASFDP-NGNISVYNTQGMKID 51 (127)
T ss_dssp TTEEEEECT-TSCEEEEETTSCEEE
T ss_pred CcccccCCC-CCcEEEEcCCCCEEE
Confidence 334444567 888888888887753
No 399
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=43.20 E-value=55 Score=26.82 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=31.4
Q ss_pred eEEEEeCCCCCeEEEEe-eCceEEEE--eCC-CCeeeee-eeecCCCCCceeEEEEEee
Q psy14042 167 MLGVQWTSDSQNLLFAI-KGGQVHLY--DYE-GNFMNKV-SMWSGPGSEMGEIAALKYY 220 (238)
Q Consensus 167 ~~~~~~~~~~~~~~~g~-~~g~~~~~--d~~-g~~~~~~-~~~~~~~~~~~~i~~~~w~ 220 (238)
...+.|+|+++.++.+. .++.|.+| |.. |...... .++ ....++|.|.
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~------~~~p~~v~~~ 360 (361)
T 3scy_A 308 PRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIK------VDKPVCLKFV 360 (361)
T ss_dssp CCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEE------CSSEEEEEEE
T ss_pred CceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeee------CCCCeEEEEc
Confidence 44678999999998887 67999995 543 4433221 111 2357888875
No 400
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=42.62 E-value=50 Score=26.26 Aligned_cols=35 Identities=23% Similarity=0.474 Sum_probs=26.2
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCC-CCeeeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE-GNFMNKVS 202 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~-g~~~~~~~ 202 (238)
......|+|+++.++++ +|.|++||.. |..+..+.
T Consensus 136 ~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~ 171 (337)
T 1pby_B 136 QITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKP 171 (337)
T ss_dssp SCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEEC
T ss_pred CcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeee
Confidence 34556799999999888 7999999986 44444443
No 401
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=42.61 E-value=31 Score=28.49 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=33.1
Q ss_pred eeEEEEeCCCCCeEEEEe-----eCceEEEEeCCCCeeeeeeeecC
Q psy14042 166 SMLGVQWTSDSQNLLFAI-----KGGQVHLYDYEGNFMNKVSMWSG 206 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~-----~~g~~~~~d~~g~~~~~~~~~~~ 206 (238)
......++|++..++.+. .+|.|.+||..|.++..+..-..
T Consensus 268 ~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~G~~ 313 (328)
T 3dsm_A 268 KYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGII 313 (328)
T ss_dssp CEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEEEES
T ss_pred ceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEEeccC
Confidence 455678899888888885 68999999999999998876433
No 402
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=42.34 E-value=26 Score=28.98 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=25.4
Q ss_pred EEeCCCCCeEEEEee-Cc--eEEEEeCCCCeeeee
Q psy14042 170 VQWTSDSQNLLFAIK-GG--QVHLYDYEGNFMNKV 201 (238)
Q Consensus 170 ~~~~~~~~~~~~g~~-~g--~~~~~d~~g~~~~~~ 201 (238)
..|+||++.+.|+.. +| +|+++|..|....++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l 75 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL 75 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe
Confidence 679999999999887 67 599999876655444
No 403
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=41.27 E-value=82 Score=24.68 Aligned_cols=37 Identities=16% Similarity=0.334 Sum_probs=27.8
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVS 202 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~ 202 (238)
....+.+++++.+....+.++.|++||.+|..+..+.
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~ 67 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFG 67 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEEC
T ss_pred CCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEec
Confidence 4456677888875555578899999999998776553
No 404
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=41.04 E-value=91 Score=25.22 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=21.9
Q ss_pred EEEEeCCCCCeEEE-EeeCceEEEEeCC
Q psy14042 168 LGVQWTSDSQNLLF-AIKGGQVHLYDYE 194 (238)
Q Consensus 168 ~~~~~~~~~~~~~~-g~~~g~~~~~d~~ 194 (238)
....|+||++.+++ +..++.|.+||.+
T Consensus 190 ~~~~~spdg~~l~v~~~~~~~v~v~~~~ 217 (347)
T 3hfq_A 190 RHLVFSPDGQYAFLAGELSSQIASLKYD 217 (347)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 45689999997777 5678999999876
No 405
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=39.95 E-value=24 Score=31.59 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=30.9
Q ss_pred eeeEEEEeCCCCCeEEEEee-CceEEEEeCCCCeeeeee
Q psy14042 165 TSMLGVQWTSDSQNLLFAIK-GGQVHLYDYEGNFMNKVS 202 (238)
Q Consensus 165 ~~~~~~~~~~~~~~~~~g~~-~g~~~~~d~~g~~~~~~~ 202 (238)
..+..+.++||++.+.|+.. +|.+.||+.+|....++.
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt 60 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLN 60 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECC
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeee
Confidence 36777889999999998877 999999998877665554
No 406
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=38.47 E-value=40 Score=27.11 Aligned_cols=32 Identities=9% Similarity=0.325 Sum_probs=25.9
Q ss_pred EEeCCCCCeEEEEee-CceEEEEeCCCCeeeee
Q psy14042 170 VQWTSDSQNLLFAIK-GGQVHLYDYEGNFMNKV 201 (238)
Q Consensus 170 ~~~~~~~~~~~~g~~-~g~~~~~d~~g~~~~~~ 201 (238)
+.|+|+++.++++.. +|.|.+||-.+..+..+
T Consensus 278 ~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 278 MALNKTETKLFISANISRELKVFTISGKVVGYV 310 (331)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred eEECCCCCEEEEecCCCCcEEEEEecCCcccce
Confidence 589999999988776 56999999988765543
No 407
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=38.25 E-value=50 Score=26.96 Aligned_cols=43 Identities=9% Similarity=0.043 Sum_probs=33.7
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEE-EEEEeccCC
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAI-IVANKIDLA 74 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~pii-lVgNK~DL~ 74 (238)
.+|++|+|...+..+...+...++.+.+ .+.+++ +|.|+.|..
T Consensus 214 ~aD~vilVv~~~~~~~~~~~~~~~~l~~----~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 214 FTGNVVYVVNSENNNKDEVKKGKELIEA----TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HHCEEEEEEETTSCCHHHHHHHHHHHHT----TTCEEEEEEEEEECC-
T ss_pred HCCEEEEEEeCCCCcHHHHHHHHHHHHh----CCCCEEEEEEeCCcCC
Confidence 6899999988888888888888877765 456665 899999864
No 408
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=38.14 E-value=27 Score=30.97 Aligned_cols=60 Identities=13% Similarity=0.053 Sum_probs=34.6
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCC-C-EEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEc
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTR-P-AIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVS 99 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~-p-iilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evS 99 (238)
.+|.+++|.|. ... + .... +..+. ... | ..+|.||.|...... .........+.|+..++
T Consensus 210 ~~d~vllVvda~~g~--~-~~~~---~~~~~--~~~~~i~gvVlnK~D~~~~~g----~~l~~~~~~~~pi~~ig 272 (432)
T 2v3c_C 210 NPDEIILVIDGTIGQ--Q-AGIQ---AKAFK--EAVGEIGSIIVTKLDGSAKGG----GALSAVAETKAPIKFIG 272 (432)
T ss_dssp CCSEEEEEEEGGGGG--G-HHHH---HHHHH--TTSCSCEEEEEECSSSCSTTH----HHHHHHHHSSCCEEEEC
T ss_pred cCcceeEEeeccccH--H-HHHH---HHHHh--hcccCCeEEEEeCCCCccchH----HHHHHHHHHCCCEEEee
Confidence 68888888887 322 1 1111 22232 334 5 889999999854221 23345566777765553
No 409
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=37.66 E-value=1e+02 Score=28.03 Aligned_cols=37 Identities=14% Similarity=0.261 Sum_probs=29.9
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeC---CCCeeeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDY---EGNFMNKVS 202 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~---~g~~~~~~~ 202 (238)
....+.++||++.+|.+..+|.|.++|. .+..+..+.
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~ 237 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK 237 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe
Confidence 3456789999999999999999999998 565565544
No 410
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=37.49 E-value=1.5e+02 Score=23.44 Aligned_cols=29 Identities=14% Similarity=0.052 Sum_probs=23.9
Q ss_pred EEEeCCCCCeEEEEee-CceEEEEeCCCCe
Q psy14042 169 GVQWTSDSQNLLFAIK-GGQVHLYDYEGNF 197 (238)
Q Consensus 169 ~~~~~~~~~~~~~g~~-~g~~~~~d~~g~~ 197 (238)
...|+|+++.++++.. ++.|++||..+..
T Consensus 44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~ 73 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQTLVQIETQLEP 73 (331)
T ss_dssp EEEECSSSCEEEEEESTTCEEEEEECSSSS
T ss_pred eEEEcCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 7889999997777766 8999999996443
No 411
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=37.31 E-value=1.3e+02 Score=24.27 Aligned_cols=65 Identities=11% Similarity=0.004 Sum_probs=42.2
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCcccccHHHHHHHHHhCCCeEE
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARAVSSQDAKNLAASFKVKFI 96 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~ 96 (238)
.+|.+|++...+..++..+...+..+.+.....+.+ .-+|.|+.+-.. ..+..+.+.+.++.+++
T Consensus 143 ~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~----~~~~~~~l~~~~g~~~l 208 (289)
T 2afh_E 143 KAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR----EDELIIALANKLGTQMI 208 (289)
T ss_dssp CCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT----HHHHHHHHHHHHTSCEE
T ss_pred hCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCchh----HHHHHHHHHHHcCcccc
Confidence 589999888778888888877777776653223455 457889986322 23344555556666644
No 412
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=36.78 E-value=42 Score=28.65 Aligned_cols=40 Identities=8% Similarity=0.081 Sum_probs=30.4
Q ss_pred CceEEEEEEEC-Ccc----------hHHHHHHHHHHHHHhcCCCCCCEEEEEE
Q psy14042 28 DETGLIIVWML-YKP----------SYHRVEQDVIRLHEEGYLRTRPAIIVAN 69 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~----------s~~~~~~~~~~l~~~~~~~~~piilVgN 69 (238)
+.-.++++|++ +|+ +.+..+.|+..+...- .+.|+++|.-
T Consensus 89 g~~pvlVvY~lP~RDC~a~ssgG~~~~~~Yk~~Id~ia~~i--~~~~~vvIlE 139 (315)
T 1uoz_A 89 GAMPVLTLYGIPHRDCGSYASGGFATGTDYRGWIDAVASGL--GSSPATIIVE 139 (315)
T ss_dssp TCBCEEEECCCTTBGGGSTTCBCCSSHHHHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred CCCcEEEEeCCCCCCchhhccCCCCCHHHHHHHHHHHHHHh--CCCceEEEEC
Confidence 44457889999 765 6888899999998765 5678777663
No 413
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=36.11 E-value=74 Score=24.64 Aligned_cols=45 Identities=11% Similarity=-0.062 Sum_probs=34.2
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCC
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 75 (238)
.+|.+|+|...+..++..+...+..+.+. ...+.-+|.|+.+-..
T Consensus 133 ~ad~vi~v~~~~~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 133 SGEEALLVTNPEISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSD 177 (237)
T ss_dssp TCSEEEEEECSCHHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCT
T ss_pred HCCeEEEEecCCcccHHHHHHHHHHHHhC---CCceEEEEEecCCccc
Confidence 78888888877888888888888887763 2234668999998643
No 414
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=35.70 E-value=1.3e+02 Score=23.96 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=28.7
Q ss_pred eEEEEeCCCCCeEEEEeeC-ceEEEEeC-CCCeeeeeee
Q psy14042 167 MLGVQWTSDSQNLLFAIKG-GQVHLYDY-EGNFMNKVSM 203 (238)
Q Consensus 167 ~~~~~~~~~~~~~~~g~~~-g~~~~~d~-~g~~~~~~~~ 203 (238)
.....|+|+++.++++... |.|++||. .|..+..+..
T Consensus 233 ~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 233 FINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp EEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 4457899999988887765 99999998 4666666554
No 415
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=35.64 E-value=67 Score=26.73 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=41.0
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCC-EEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP-AIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV 106 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv 106 (238)
.+|.+++|.|.... .+.......+.. ..| ..+|.||.|.... .......+...+.|+..++ +|+++
T Consensus 212 ~~d~vllVvda~~g--~~~~~~~~~~~~-----~~~i~gvVlnk~D~~~~----~g~~~~~~~~~~~pi~~i~--~Ge~v 278 (297)
T 1j8m_F 212 KPDEVTLVIDASIG--QKAYDLASKFNQ-----ASKIGTIIITKMDGTAK----GGGALSAVAATGATIKFIG--TGEKI 278 (297)
T ss_dssp CCSEEEEEEEGGGG--GGHHHHHHHHHH-----TCTTEEEEEECGGGCTT----HHHHHHHHHTTTCCEEEEE--CSSST
T ss_pred cCCEEEEEeeCCch--HHHHHHHHHHHh-----hCCCCEEEEeCCCCCcc----hHHHHHHHHHHCcCEEEEe--CCCCh
Confidence 78899999887211 111112222222 355 6788999997532 2234456677888877766 56666
Q ss_pred HHH
Q psy14042 107 DEL 109 (238)
Q Consensus 107 ~el 109 (238)
+++
T Consensus 279 ~dl 281 (297)
T 1j8m_F 279 DEL 281 (297)
T ss_dssp TCE
T ss_pred hhc
Confidence 543
No 416
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=35.12 E-value=38 Score=30.67 Aligned_cols=30 Identities=3% Similarity=-0.018 Sum_probs=26.4
Q ss_pred eeEEEEeCCCCCeEEEEeeC----------ceEEEEeCCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKG----------GQVHLYDYEG 195 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~----------g~~~~~d~~g 195 (238)
......|+||++.+.++..+ .+|++||..|
T Consensus 131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 56678999999999999877 6899999987
No 417
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=34.90 E-value=58 Score=28.18 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=22.6
Q ss_pred CCCeEEEEeeCceEEEEeCC-CCeeeeee
Q psy14042 175 DSQNLLFAIKGGQVHLYDYE-GNFMNKVS 202 (238)
Q Consensus 175 ~~~~~~~g~~~g~~~~~d~~-g~~~~~~~ 202 (238)
++..+.-|+.++.|+|||.. |..+..+.
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~ 220 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQLLKKMH 220 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCceEEEecCCCcEEEEECCCCcEEEEEc
Confidence 55667778999999999996 88777764
No 418
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=34.63 E-value=62 Score=29.49 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=26.8
Q ss_pred eeEEEEeCCCCCeEEEEeeCc-----eEEEEeCCCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGG-----QVHLYDYEGN 196 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g-----~~~~~d~~g~ 196 (238)
.+..+.|+||++.++++..++ .|++||..+.
T Consensus 259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG 294 (706)
T ss_dssp EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence 577899999999999988876 9999998654
No 419
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=34.60 E-value=51 Score=26.22 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=27.5
Q ss_pred EEEeCCCCCeEEEEeeCceEEEEeCCCCeeeeeeee
Q psy14042 169 GVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMW 204 (238)
Q Consensus 169 ~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~ 204 (238)
...+++++. +++++ ++.|.+||.+|..+..+..+
T Consensus 222 ~i~~d~~G~-l~v~~-~~~v~~~~~~g~~~~~~~~~ 255 (296)
T 3e5z_A 222 GLRVDAGGL-IWASA-GDGVHVLTPDGDELGRVLTP 255 (296)
T ss_dssp SEEEBTTSC-EEEEE-TTEEEEECTTSCEEEEEECS
T ss_pred eEEECCCCC-EEEEc-CCeEEEECCCCCEEEEEECC
Confidence 556788875 77788 89999999999988777655
No 420
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=33.95 E-value=58 Score=26.06 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=23.0
Q ss_pred CCeEEEEeeCceEEEEeCCCCeeeeeee
Q psy14042 176 SQNLLFAIKGGQVHLYDYEGNFMNKVSM 203 (238)
Q Consensus 176 ~~~~~~g~~~g~~~~~d~~g~~~~~~~~ 203 (238)
+..+++|+.+|.++.+|.+|..+....+
T Consensus 265 ~g~l~v~t~~ggl~~~d~~g~~~~~~~~ 292 (330)
T 3hxj_A 265 TDTIYFGSYDGHLYAINPDGTEKWNFET 292 (330)
T ss_dssp TSCEEEECTTCEEEEECTTSCEEEEEEC
T ss_pred CCeEEEecCCCCEEEECCCCcEEEEEEc
Confidence 5678899999999999998888766554
No 421
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=33.82 E-value=62 Score=26.86 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=32.1
Q ss_pred EeCC---CCCeEEEEee-CceEEEEeCCCCeeeeeeeecCCCCCceeEEEEEeec
Q psy14042 171 QWTS---DSQNLLFAIK-GGQVHLYDYEGNFMNKVSMWSGPGSEMGEIAALKYYL 221 (238)
Q Consensus 171 ~~~~---~~~~~~~g~~-~g~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~w~~ 221 (238)
.|+| +++.++.+.. ++.|.+||-++..+..+.-... .+..-++..-|++
T Consensus 313 a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l~~~~~~~~--~~p~~~~~~~~~~ 365 (365)
T 1jof_A 313 AVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRVARVRI--PEPGFGMNAIWYD 365 (365)
T ss_dssp CEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEEEEEEC--CSTTEEEEEEEEC
T ss_pred eecCCCcCCCEEEEEEcCCCeEEEEEEchhhCceeeEEEc--CCCcceeeeEecC
Confidence 4578 7899888876 4999999988775544331111 2234577777763
No 422
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=33.82 E-value=1.6e+02 Score=22.88 Aligned_cols=39 Identities=13% Similarity=0.285 Sum_probs=27.5
Q ss_pred eeEEEEeCCCCCeEEEEeeCc-eEEEEeCCCCeeeeeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGG-QVHLYDYEGNFMNKVSMW 204 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g-~~~~~d~~g~~~~~~~~~ 204 (238)
......+++++.+..-...++ .|.+||..|.++..+...
T Consensus 208 ~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~ 247 (286)
T 1q7f_A 208 YPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESK 247 (286)
T ss_dssp SEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEES
T ss_pred CCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEccc
Confidence 345667888886444444554 999999999988776543
No 423
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=33.41 E-value=63 Score=26.48 Aligned_cols=33 Identities=12% Similarity=-0.024 Sum_probs=24.7
Q ss_pred eeEEEEeCCCCCeEEEEeeC-----ceEEEEeCCCCee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKG-----GQVHLYDYEGNFM 198 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~-----g~~~~~d~~g~~~ 198 (238)
.+....|+|+++.++++... +.|++||..+...
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred cccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 45667999999988877654 5599999865443
No 424
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=33.12 E-value=81 Score=25.38 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=24.4
Q ss_pred eeEEEEeCCCCC-eEEEEeeCceEEEEeCCCCe
Q psy14042 166 SMLGVQWTSDSQ-NLLFAIKGGQVHLYDYEGNF 197 (238)
Q Consensus 166 ~~~~~~~~~~~~-~~~~g~~~g~~~~~d~~g~~ 197 (238)
+.....|+++++ ++..++.+|.|+.||..|..
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~ 78 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTV 78 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEETTSCE
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeCCCCE
Confidence 445677888887 66677788899999887763
No 425
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=32.77 E-value=44 Score=30.53 Aligned_cols=33 Identities=15% Similarity=0.106 Sum_probs=27.0
Q ss_pred eEEEEeCCCCCeEEEEeeC---------ceEEEEeCCCCeee
Q psy14042 167 MLGVQWTSDSQNLLFAIKG---------GQVHLYDYEGNFMN 199 (238)
Q Consensus 167 ~~~~~~~~~~~~~~~g~~~---------g~~~~~d~~g~~~~ 199 (238)
+..+.||||++.+.++..+ +.+++||..+....
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 104 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ 104 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE
Confidence 6678999999999999764 88999998765443
No 426
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=32.26 E-value=95 Score=25.65 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=23.5
Q ss_pred CCCeEEEEeeCceEEEEeCC-CCeeeeeeee
Q psy14042 175 DSQNLLFAIKGGQVHLYDYE-GNFMNKVSMW 204 (238)
Q Consensus 175 ~~~~~~~g~~~g~~~~~d~~-g~~~~~~~~~ 204 (238)
++..+++++.+|.++.+|.. |..+-+..+.
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 132 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVA 132 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence 46788999999999999974 8887665543
No 427
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=31.46 E-value=1.2e+02 Score=24.46 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=21.4
Q ss_pred eEEEEeCCCCCeEEEEeeCceEEEEeCC
Q psy14042 167 MLGVQWTSDSQNLLFAIKGGQVHLYDYE 194 (238)
Q Consensus 167 ~~~~~~~~~~~~~~~g~~~g~~~~~d~~ 194 (238)
+..+.|+|++++...+..++.|++||..
T Consensus 143 ~~~~~~spdg~l~v~~~~~~~v~~~~~~ 170 (347)
T 3hfq_A 143 IHYTDLTPDNRLAVIDLGSDKVYVYNVS 170 (347)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred ceEEEECCCCcEEEEeCCCCEEEEEEEC
Confidence 5568899999944444568899999976
No 428
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=30.26 E-value=58 Score=29.79 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=38.4
Q ss_pred EeecccCceeeecccceeeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecC
Q psy14042 148 IVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSG 206 (238)
Q Consensus 148 ~~~~~~g~rv~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~ 206 (238)
.+....|..+|-..... ........-.+.++++|+.+|.++.||. .|..+-+.++..+
T Consensus 470 A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g 528 (582)
T 1flg_A 470 AMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG 528 (582)
T ss_dssp EECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred EEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCC
Confidence 34445566667654432 2211111224788999999999999997 6999998887643
No 429
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=30.13 E-value=1.3e+02 Score=24.47 Aligned_cols=31 Identities=16% Similarity=0.098 Sum_probs=25.4
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCCCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYEGN 196 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~g~ 196 (238)
....+.+++++.+....+.++.|++||.+|.
T Consensus 92 ~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~ 122 (329)
T 3fvz_A 92 LPHGLSIDTDGNYWVTDVALHQVFKLDPHSK 122 (329)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEECTTCS
T ss_pred CceEEEECCCCCEEEEECCCCEEEEEeCCCC
Confidence 4556778899996666777899999999998
No 430
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=29.05 E-value=88 Score=24.83 Aligned_cols=47 Identities=13% Similarity=0.023 Sum_probs=32.9
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhc--CCCCCCEE-EEEEeccCC
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEG--YLRTRPAI-IVANKIDLA 74 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~--~~~~~pii-lVgNK~DL~ 74 (238)
.+|.+|++...+..++..+...++.+.+.. ...+.+++ +|.|+.|-.
T Consensus 133 ~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 133 AAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp HCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred HCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 789999998888778777766666554422 12456664 899999854
No 431
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=28.91 E-value=1.1e+02 Score=24.28 Aligned_cols=27 Identities=7% Similarity=0.089 Sum_probs=22.1
Q ss_pred CeEEEEeeCceEEEEeCCCCeeeeeee
Q psy14042 177 QNLLFAIKGGQVHLYDYEGNFMNKVSM 203 (238)
Q Consensus 177 ~~~~~g~~~g~~~~~d~~g~~~~~~~~ 203 (238)
..+++|+.+|.+..+|..|..+.+...
T Consensus 226 g~l~v~t~~~gl~~~~~~g~~~~~~~~ 252 (330)
T 3hxj_A 226 GTIYVTSLDGHLYAINPDGTEKWRFKT 252 (330)
T ss_dssp SCEEEEETTTEEEEECTTSCEEEEEEC
T ss_pred CeEEEEcCCCeEEEECCCCCEeEEeeC
Confidence 478999999999999998988765543
No 432
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=28.85 E-value=69 Score=28.10 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=26.5
Q ss_pred CCCEEEEEEecc--CCCcccccHHHHHHHHHh--CCCeEEEEccCC
Q psy14042 61 TRPAIIVANKID--LARARAVSSQDAKNLAAS--FKVKFIEVSVGI 102 (238)
Q Consensus 61 ~~piilVgNK~D--L~~~~~v~~~~~~~~~~~--~~~~~~evSA~t 102 (238)
..|++.+.|+.+ +..........++++++. .+.+++.+||+.
T Consensus 222 ~KPviy~~Nv~e~~~~~~~n~~~~~v~~~~~~~~~~~~~v~~sa~~ 267 (396)
T 2ohf_A 222 SKPMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPGALVIPFSGAL 267 (396)
T ss_dssp GSCEEEEEECCHHHHHHTCCHHHHHHHHHHHHHSTTCEEEEECHHH
T ss_pred CCceEEEEEecHHHhcccccHHHHHHHHHHHhhCCCCeEEEEEcHH
Confidence 479999999973 332111122345555554 368899999985
No 433
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=28.67 E-value=72 Score=28.32 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=39.5
Q ss_pred CceEEEEEEEC-C-cchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCC
Q psy14042 28 DETGLIIVWML-Y-KPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHN 105 (238)
Q Consensus 28 ~ad~~IlV~dv-d-~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~g 105 (238)
..+.+++|.|. . .+... ....+.+ .-.+..+|.||.|..... ..+.......+.|+..++. |++
T Consensus 211 ~pd~vlLVlDa~~gq~a~~----~a~~f~~----~~~~~gVIlTKlD~~a~~----G~als~~~~~g~Pi~fig~--Ge~ 276 (433)
T 3kl4_A 211 KPDDVILVIDASIGQKAYD----LASRFHQ----ASPIGSVIITKMDGTAKG----GGALSAVVATGATIKFIGT--GEK 276 (433)
T ss_dssp CCSEEEEEEEGGGGGGGHH----HHHHHHH----HCSSEEEEEECGGGCSCH----HHHHHHHHHHTCEEEEEEC--CSS
T ss_pred CCcceEEEEeCccchHHHH----HHHHHhc----ccCCcEEEEecccccccc----hHHHHHHHHHCCCEEEEEC--CCC
Confidence 56888999888 3 22222 2233332 224577899999976432 1334445567899877775 665
Q ss_pred HH
Q psy14042 106 VD 107 (238)
Q Consensus 106 v~ 107 (238)
++
T Consensus 277 v~ 278 (433)
T 3kl4_A 277 ID 278 (433)
T ss_dssp SS
T ss_pred hH
Confidence 53
No 434
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=28.56 E-value=67 Score=29.24 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=39.1
Q ss_pred eEEeecccCceeeecccceeeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeec
Q psy14042 146 AVIVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWS 205 (238)
Q Consensus 146 ~~~~~~~~g~rv~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~ 205 (238)
+..+....|..+|-..... ..........+.++++|+.+|.++++|. .|..+.++.+..
T Consensus 446 l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 446 IRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp EEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 3344455676677655442 2222222234688999999999999996 699998887764
No 435
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=28.11 E-value=2e+02 Score=21.98 Aligned_cols=58 Identities=19% Similarity=0.072 Sum_probs=40.0
Q ss_pred EEEEEEe--CCCcccccC---CceEEEEEEECCcchHHHHHHHHHHHHHhcCCCCCCEEEEEEecc
Q psy14042 12 VRAIIWN--EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKID 72 (238)
Q Consensus 12 v~l~iWD--e~~~~l~~~---~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~D 72 (238)
+.+.|.| ..+...... .+|.+|++...+..++..+....+.+.+.. -..+.+|.|+.+
T Consensus 132 yD~viiD~pp~~~~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~---~~~~~~v~N~~~ 194 (254)
T 3kjh_A 132 KEAVVMDMGAGIEHLTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLG---IKKVRYVINKVR 194 (254)
T ss_dssp CSEEEEEECTTCTTCCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHT---CSCEEEEEEEEC
T ss_pred CCEEEEeCCCcccHHHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcC---CccEEEEEeCCC
Confidence 4567788 222222222 889999998888888888887777555432 245789999997
No 436
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=27.85 E-value=71 Score=29.49 Aligned_cols=60 Identities=17% Similarity=0.297 Sum_probs=39.7
Q ss_pred eEEeecccCceeeecccceeeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeeeeecC
Q psy14042 146 AVIVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVSMWSG 206 (238)
Q Consensus 146 ~~~~~~~~g~rv~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~~~~ 206 (238)
+..+....|..+|-..... ....--..-.+.++++|+.+|.++.||. .|..+-+.++..+
T Consensus 455 l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g 515 (599)
T 1w6s_A 455 IKAYNAITGDYKWEKMERF-AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG 515 (599)
T ss_dssp EEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred EEEEECCCCCEEeEecCCC-CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCC
Confidence 3344455677777765432 2211111236788999999999999997 5999988887643
No 437
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=27.53 E-value=60 Score=26.41 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=26.2
Q ss_pred EEEEeCCCCCeEEEEeeCceEEEEeCCCCeee
Q psy14042 168 LGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMN 199 (238)
Q Consensus 168 ~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~ 199 (238)
....|++++.+++.++.+|.|+.||..|..+.
T Consensus 22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~ 53 (322)
T 2fp8_A 22 NSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV 53 (322)
T ss_dssp CCEECCTTCSSEEEECTTSEEEEECCTTTCEE
T ss_pred eEEEEcCCCCEEEEEcCCCeEEEECCCCCceE
Confidence 34568888888999999999999999876544
No 438
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=27.32 E-value=99 Score=28.54 Aligned_cols=32 Identities=19% Similarity=0.381 Sum_probs=25.4
Q ss_pred eeEEEEeCCCCCeEEEEeeC-----ceEEEEeCCCCe
Q psy14042 166 SMLGVQWTSDSQNLLFAIKG-----GQVHLYDYEGNF 197 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~-----g~~~~~d~~g~~ 197 (238)
.+..+.||||++.+.++... .+|+++|..+.-
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~ 166 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ 166 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC
Confidence 67788999999999886642 479999987544
No 439
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=27.09 E-value=1.4e+02 Score=24.39 Aligned_cols=36 Identities=14% Similarity=0.072 Sum_probs=25.5
Q ss_pred eeEEEEeCCCC-CeEEEEeeCceEEEEeCCCCeeeee
Q psy14042 166 SMLGVQWTSDS-QNLLFAIKGGQVHLYDYEGNFMNKV 201 (238)
Q Consensus 166 ~~~~~~~~~~~-~~~~~g~~~g~~~~~d~~g~~~~~~ 201 (238)
......|++++ .+.+.++..|+|+.||..|..+..+
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~ 86 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVH 86 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 34566799875 4555667789999999887655443
No 440
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=26.28 E-value=1e+02 Score=27.68 Aligned_cols=37 Identities=8% Similarity=0.184 Sum_probs=30.4
Q ss_pred eeEEEEeCCCCCeEEEEee-----CceEEEEeCC-CCeeeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAIK-----GGQVHLYDYE-GNFMNKVS 202 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~-----~g~~~~~d~~-g~~~~~~~ 202 (238)
.+....+++++..++++.- ++.|.|||.+ |..+..++
T Consensus 480 ~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 480 RVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp EEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 6778899999999999854 6999999986 66666555
No 441
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=26.12 E-value=79 Score=29.10 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=25.9
Q ss_pred eeEEEEeCCCCCeEEEEeeC-----ceEEEEeCCCCe
Q psy14042 166 SMLGVQWTSDSQNLLFAIKG-----GQVHLYDYEGNF 197 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~-----g~~~~~d~~g~~ 197 (238)
.+....||||++.+.|+... .+|+++|..|.-
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~ 158 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGE 158 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCC
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCC
Confidence 57788999999999977653 489999997544
No 442
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=25.93 E-value=55 Score=25.80 Aligned_cols=46 Identities=9% Similarity=-0.093 Sum_probs=34.2
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcC-----CCCCCEEEEEEeccC
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGY-----LRTRPAIIVANKIDL 73 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~-----~~~~piilVgNK~DL 73 (238)
.+|.+|++...+..++..+...+..+..... ....++-+|.|+.|-
T Consensus 135 ~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 135 FADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred hCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 8899999988888888888888777754321 022467899999975
No 443
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=25.86 E-value=78 Score=24.30 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=25.6
Q ss_pred CCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEE
Q psy14042 60 RTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEV 98 (238)
Q Consensus 60 ~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~ev 98 (238)
.++|+|++|. +=.. -..++..++++. ++|++.+
T Consensus 35 AkRPvIl~Gg-v~~~----~A~~eL~~~ae~-~iPVvtT 67 (174)
T 1ytl_A 35 AKRPLLIVGP-DMTD----EMFERVKKFVEK-DITVVAT 67 (174)
T ss_dssp CSSEEEEECS-CCCH----HHHHHHHHHHTS-SSEEEEE
T ss_pred CCCCEEEECC-CCCc----cHHHHHHHHHHc-CCCEEEc
Confidence 7899999999 7321 223577899999 9999877
No 444
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=25.79 E-value=67 Score=26.62 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=23.7
Q ss_pred CCeEEEEeeCceEEEEeC-CCCeeeeeee
Q psy14042 176 SQNLLFAIKGGQVHLYDY-EGNFMNKVSM 203 (238)
Q Consensus 176 ~~~~~~g~~~g~~~~~d~-~g~~~~~~~~ 203 (238)
+..+++++.+|.++++|. .|.++.+..+
T Consensus 318 ~~~l~v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 318 NGNLVVGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 568999999999999995 6988877665
No 445
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=25.57 E-value=63 Score=24.35 Aligned_cols=44 Identities=9% Similarity=0.085 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEE
Q psy14042 47 EQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEV 98 (238)
Q Consensus 47 ~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~ev 98 (238)
....+.|.+ .++|+|++|.-+... -..+++.++++..++|++.+
T Consensus 25 ~~aa~~L~~----AkrPvil~G~g~~~~----~a~~~l~~lae~~~iPV~~t 68 (170)
T 3cf4_G 25 EMAAKIISK----AKRPLLMVGTLALDP----ELLDRVVKISKAANIPIAAT 68 (170)
T ss_dssp HHHHHHHHH----CSSEEEEECSTTCCH----HHHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHc----CCCCEEEECCCccch----hHHHHHHHHHHHhCCCEEEC
Confidence 334444444 789999999877432 13457889999999998754
No 446
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=24.74 E-value=37 Score=28.76 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=28.4
Q ss_pred EeecccCceeeecccceeeeEEEEeCCCCCeEEEEeeCceEEEEeC-CCCeeeeee
Q psy14042 148 IVGSVDGNRIWGKEFKKTSMLGVQWTSDSQNLLFAIKGGQVHLYDY-EGNFMNKVS 202 (238)
Q Consensus 148 ~~~~~~g~rv~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~d~-~g~~~~~~~ 202 (238)
.+....|..+|-... . .+.......++.++..++.+|.++.||. .|..+.+..
T Consensus 23 a~d~~tG~~~W~~~~-~-~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~ 76 (369)
T 2hz6_A 23 AVSKRTGSIKWTLKE-D-PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP 76 (369)
T ss_dssp EEETTTCCEEEEEEC-C-CSCCCC-----CCEEECTTTCCEEEC-----CCSEECS
T ss_pred EEECCCCCEEEEecC-C-CceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee
Confidence 344456666666555 2 3334445566777777789999999998 587755443
No 447
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=24.59 E-value=2.8e+02 Score=25.37 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=25.0
Q ss_pred eEEEEeCCCCCeEEEEeeCce----------------EEEEeCCCCe
Q psy14042 167 MLGVQWTSDSQNLLFAIKGGQ----------------VHLYDYEGNF 197 (238)
Q Consensus 167 ~~~~~~~~~~~~~~~g~~~g~----------------~~~~d~~g~~ 197 (238)
+....|+||++.+++++.++. |++|+-.+..
T Consensus 173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~ 219 (710)
T 2xdw_A 173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ 219 (710)
T ss_dssp SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCG
T ss_pred cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCc
Confidence 345789999999999998766 9999986543
No 448
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=23.87 E-value=3.1e+02 Score=23.69 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=30.6
Q ss_pred eeEEEEeCCCCCeEEEEe-e-CceEEEEeC-CCCeeeeeeeecCCC
Q psy14042 166 SMLGVQWTSDSQNLLFAI-K-GGQVHLYDY-EGNFMNKVSMWSGPG 208 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~-~-~g~~~~~d~-~g~~~~~~~~~~~~~ 208 (238)
......+++|++.+++.+ . +|.|.|+|. .|..+..+.....++
T Consensus 332 ~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~ 377 (386)
T 3sjl_D 332 EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGP 377 (386)
T ss_dssp EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSC
T ss_pred CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCc
Confidence 344678899998544443 3 899999999 588888777664433
No 449
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=23.87 E-value=1.6e+02 Score=26.93 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=28.3
Q ss_pred eeEEEEeCCCCCeEEEEeeCc----eEEEEeCCCCeeeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGG----QVHLYDYEGNFMNKVS 202 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g----~~~~~d~~g~~~~~~~ 202 (238)
.+....||||++.+.++..++ +|+++|..+....++.
T Consensus 228 ~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~ 268 (695)
T 2bkl_A 228 TFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLV 268 (695)
T ss_dssp CEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEE
T ss_pred EEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEee
Confidence 556788999999999998877 9999987544444443
No 450
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=23.85 E-value=1.1e+02 Score=28.31 Aligned_cols=59 Identities=17% Similarity=0.267 Sum_probs=39.3
Q ss_pred ceEEeecccCceeeecccce---------eeeEEEEeCCCCC---eEEEEeeCceEEEEeC-CCCeeeeeee
Q psy14042 145 SAVIVGSVDGNRIWGKEFKK---------TSMLGVQWTSDSQ---NLLFAIKGGQVHLYDY-EGNFMNKVSM 203 (238)
Q Consensus 145 ~~~~~~~~~g~rv~g~~~~~---------~~~~~~~~~~~~~---~~~~g~~~g~~~~~d~-~g~~~~~~~~ 203 (238)
++..+....|..+|.-.... ......+...+++ .+++++.+|.++++|. .|.++....+
T Consensus 271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~ 342 (668)
T 1kv9_A 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKF 342 (668)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccc
Confidence 35666667888888765420 0222333334554 6899999999999997 5998865544
No 451
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=23.63 E-value=1.6e+02 Score=25.50 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=7.5
Q ss_pred EEEEeeCceEEEEeCC
Q psy14042 179 LLFAIKGGQVHLYDYE 194 (238)
Q Consensus 179 ~~~g~~~g~~~~~d~~ 194 (238)
+..++.+|++++||-.
T Consensus 139 ~av~~~dG~L~v~dl~ 154 (388)
T 1xip_A 139 LVILNSVNDLSALDLR 154 (388)
T ss_dssp EEEEETTSEEEEEETT
T ss_pred EEEEECCCCEEEEEcc
Confidence 3334455555555543
No 452
>2y9w_C Lectin-like fold protein, polyphenol oxidase; oxidoreductase, copper-containing, pigmentation, type-3 COPP protein; HET: PGE; 2.30A {Agaricus bisporus} PDB: 2y9x_E
Probab=23.39 E-value=29 Score=24.67 Aligned_cols=29 Identities=21% Similarity=0.487 Sum_probs=19.1
Q ss_pred eeEEEEeCCCCCeEEEEeeCceEEEEeCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGGQVHLYDYE 194 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g~~~~~d~~ 194 (238)
.+....|.+.++...+.|.+|.+.++|..
T Consensus 16 ilnganwannsatenlatnsgtliifdqs 44 (150)
T 2y9w_C 16 ILNGANWANNSATENLATNSGTLIIFDQS 44 (150)
T ss_dssp EEETTEEEEECCC------CCEEEEEESC
T ss_pred eeccccccccchhhhhhcCCceEEEEcCC
Confidence 44566899999999999999999999974
No 453
>2bog_X Endoglucanase E-2; hydrolase, thermobifida fusca, TIM A/B fold, glycoside hydrolase family 6; HET: MGL SGC BGC; 1.04A {Thermomonospora fusca} PDB: 2bof_X* 2boe_X* 2bod_X* 1tml_A* 3ru8_X 3rpt_X
Probab=22.98 E-value=82 Score=26.42 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=27.1
Q ss_pred ceEEEEEEEC-Ccc----------hHHHHHHHHHHHHHhcCCCCCCEEEEE
Q psy14042 29 ETGLIIVWML-YKP----------SYHRVEQDVIRLHEEGYLRTRPAIIVA 68 (238)
Q Consensus 29 ad~~IlV~dv-d~~----------s~~~~~~~~~~l~~~~~~~~~piilVg 68 (238)
.-.++++|++ +|+ +.+..+.|+..+...- .+.|+++|.
T Consensus 66 ~~pvlVvY~lP~RDCa~aS~Gg~~~~~~Yk~~Id~ia~~i--~~~~~vvIl 114 (286)
T 2bog_X 66 KIPILVVSNAPGRDCGNHSSGGAPSHSAYRSWIDEFAAGL--KNRPAYIIV 114 (286)
T ss_dssp CBCEEEECCCSCSCCC------CSSHHHHHHHHHHHHHTT--TTCCCEEEE
T ss_pred CceEEEEeCCCCCCcccccCCCCCCHHHHHHHHHHHHHHh--CCCceEEEE
Confidence 3446888888 643 5788889999997754 567766654
No 454
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=22.50 E-value=99 Score=27.82 Aligned_cols=31 Identities=16% Similarity=0.368 Sum_probs=23.1
Q ss_pred eeEEEEeCCCCCeEEEEeeCc--eEEEEeCCCC
Q psy14042 166 SMLGVQWTSDSQNLLFAIKGG--QVHLYDYEGN 196 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~~g--~~~~~d~~g~ 196 (238)
.+....|+||+++++.+..+| .|+++|..+.
T Consensus 243 ~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~ 275 (662)
T 3azo_A 243 AIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG 275 (662)
T ss_dssp CEEEEEECTTSCEEEEECTTSSCEEEEECTTTC
T ss_pred eEcceEECCCCeEEEEECCCCCeEEEEEECCCC
Confidence 556788999999666666667 8888887443
No 455
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=22.18 E-value=78 Score=29.02 Aligned_cols=69 Identities=13% Similarity=0.048 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q psy14042 45 RVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRL 119 (238)
Q Consensus 45 ~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv~elf~~i~~~l~~ 119 (238)
++..-++.+++ -+.|+|+..|+..-..+.+ .+.+++++++.|+.+..+=++-|+|-.+|-+.+++.+..
T Consensus 362 NL~kHien~~~----fGvpvVVaiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~wa~GG~G~~~LA~~Vv~~~~~ 430 (557)
T 3pzx_A 362 NLEKHIENIGK----FGVPAVVAINAFPTDTEAE--LNLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLES 430 (557)
T ss_dssp HHHHHHHHHHT----TTCCEEEEEECCTTCCHHH--HHHHHHHCCSSEEEEECHHHHGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----cCCCeEEEEeCCCCCCHHH--HHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHHhc
Confidence 33344444444 5799999999975433322 234566777788876656677788988988888877754
No 456
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=22.15 E-value=91 Score=26.25 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=23.0
Q ss_pred CCCeEEEEeeCceEEEEeC-CCCeeeeeee
Q psy14042 175 DSQNLLFAIKGGQVHLYDY-EGNFMNKVSM 203 (238)
Q Consensus 175 ~~~~~~~g~~~g~~~~~d~-~g~~~~~~~~ 203 (238)
++..+++|+.+|.|+.||. .|..+.+...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~ 37 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE 37 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC
Confidence 4678888999999999994 6888776654
No 457
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=21.97 E-value=1.5e+02 Score=25.55 Aligned_cols=82 Identities=16% Similarity=0.066 Sum_probs=50.8
Q ss_pred CceEEEEEEECCcchH-----------HHHHHHHHHHHHhcCC-CCC-CEEEEEEeccCCCcccccHHHHHHHHHhCCCe
Q psy14042 28 DETGLIIVWMLYKPSY-----------HRVEQDVIRLHEEGYL-RTR-PAIIVANKIDLARARAVSSQDAKNLAASFKVK 94 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~-----------~~~~~~~~~l~~~~~~-~~~-piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~ 94 (238)
+.+.+|+|++..+..+ ++.-..+..+.+.... .+. .+=++.|..++.... ..+..+.+.+..++|
T Consensus 253 ~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~~--~~~~~~~ie~~~glP 330 (349)
T 2obn_A 253 QPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEYA--AKEAIAHTIAETGLP 330 (349)
T ss_dssp CCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTTSCHHH--HHHHHHHHHHHHCSC
T ss_pred CCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCCHHH--HHHHHHHHHHHHCCC
Confidence 7789999999744333 6666666666553320 233 445788998875332 334566677778888
Q ss_pred EEEEccCCCCCHHHHHHHHH
Q psy14042 95 FIEVSVGIHHNVDELLVGIL 114 (238)
Q Consensus 95 ~~evSA~t~~gv~elf~~i~ 114 (238)
.+ .-...|++.+.+.|.
T Consensus 331 v~---d~~r~g~~~l~~~~~ 347 (349)
T 2obn_A 331 CT---DVVRFGADVLLDAVM 347 (349)
T ss_dssp EE---CHHHHCSHHHHHHHH
T ss_pred EE---EEecCCHHHHHHHHh
Confidence 54 333347777776654
No 458
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=21.89 E-value=2.9e+02 Score=21.85 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=26.7
Q ss_pred EEEEeCCCCCeEEEEee-CceEEEEeCC-CCeeeeeeee
Q psy14042 168 LGVQWTSDSQNLLFAIK-GGQVHLYDYE-GNFMNKVSMW 204 (238)
Q Consensus 168 ~~~~~~~~~~~~~~g~~-~g~~~~~d~~-g~~~~~~~~~ 204 (238)
....+++++ .+++++. .|.|..||.+ |.++..+.++
T Consensus 202 ~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 202 DGMCIDAEG-KLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp EEEEEBTTS-CEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred CeeEECCCC-CEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 345567777 5666664 6789999997 9998887765
No 459
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=21.69 E-value=1.7e+02 Score=23.56 Aligned_cols=63 Identities=13% Similarity=0.015 Sum_probs=38.4
Q ss_pred CceEEEEEEECCcchHHHHHHHHHHHHHhcC--CCCCCE-EEEEEeccCCCcccccHHHHHHHHHhCC
Q psy14042 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGY--LRTRPA-IIVANKIDLARARAVSSQDAKNLAASFK 92 (238)
Q Consensus 28 ~ad~~IlV~dvd~~s~~~~~~~~~~l~~~~~--~~~~pi-ilVgNK~DL~~~~~v~~~~~~~~~~~~~ 92 (238)
.+|.+|++...+..++..+...+..+.+... ..+.++ -+|.|+.|.... ...+..+++.+.++
T Consensus 176 ~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~--~~~~~~~~~~~~~~ 241 (298)
T 2oze_A 176 ASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSA--TIKSNLEELYKQHK 241 (298)
T ss_dssp HCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCH--HHHHHHHHHHHHTT
T ss_pred HCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcH--HHHHHHHHHHHHhc
Confidence 6889998887777777777766666544210 145664 489999986432 12233444445544
No 460
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=21.52 E-value=3.3e+02 Score=22.16 Aligned_cols=32 Identities=13% Similarity=0.019 Sum_probs=24.8
Q ss_pred eeEEEEeCCCCCeEEEEee-CceEEEEeC---CCCe
Q psy14042 166 SMLGVQWTSDSQNLLFAIK-GGQVHLYDY---EGNF 197 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~~-~g~~~~~d~---~g~~ 197 (238)
......|+|+++.++++.. +++|.+|+. .|.+
T Consensus 194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~ 229 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP 229 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence 3556789999999988775 789999864 3665
No 461
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=21.41 E-value=2.5e+02 Score=21.85 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=0.0
Q ss_pred EEEEeCCCCCeEEE-------EeeCceEEEEeCCCCeeeeeee-----ecCCCCCceeEEEEEeecC
Q psy14042 168 LGVQWTSDSQNLLF-------AIKGGQVHLYDYEGNFMNKVSM-----WSGPGSEMGEIAALKYYLN 222 (238)
Q Consensus 168 ~~~~~~~~~~~~~~-------g~~~g~~~~~d~~g~~~~~~~~-----~~~~~~~~~~i~~~~w~~~ 222 (238)
....|++++.+... ++.+|.|++||..+..+..+.. . ...+.++.+...
T Consensus 21 ~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~------~~~~~~i~~~~~ 81 (314)
T 1pjx_A 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGY------GGIPAGCQCDRD 81 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTE------ECCEEEEEECSS
T ss_pred cCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCC------CCCCceEEEecC
No 462
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=21.34 E-value=1e+02 Score=21.77 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=26.5
Q ss_pred CCCeEEEEeeCceEEEEeCCCCeeeeeeeec
Q psy14042 175 DSQNLLFAIKGGQVHLYDYEGNFMNKVSMWS 205 (238)
Q Consensus 175 ~~~~~~~g~~~g~~~~~d~~g~~~~~~~~~~ 205 (238)
.+..++|-..+|.+.+.|..|+|++--+|..
T Consensus 63 ~dskVy~N~~T~~~Viid~~g~FvsGwKl~p 93 (107)
T 1v74_A 63 KGSKVYFNPNTMNVVIIKSNGEFLSGWKINP 93 (107)
T ss_dssp TTCEEEECTTTCEEEEECTTSCEEEEEECCT
T ss_pred CCcEEEEeCCCCeEEEEcCCCCEEEEEEcCC
Confidence 3577889999999999999999998777763
No 463
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=20.52 E-value=2e+02 Score=19.66 Aligned_cols=78 Identities=10% Similarity=-0.010 Sum_probs=38.7
Q ss_pred CceEEEEEEEC-CcchHHHHHHHHHHHHHhcCCCCCCEEEEEEeccCCCcccccHHHHHHHHHhCCCeEEEEccCCCCCH
Q psy14042 28 DETGLIIVWML-YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV 106 (238)
Q Consensus 28 ~ad~~IlV~dv-d~~s~~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~evSA~t~~gv 106 (238)
..|++|+=+.+ +.+.++ ++..+++.......|+|++....|. .....+...|+..|..- ....
T Consensus 52 ~~dlii~d~~l~~~~g~~----~~~~l~~~~~~~~~pii~ls~~~~~---------~~~~~~~~~g~~~~l~k---p~~~ 115 (147)
T 2zay_A 52 HPHLIITEANMPKISGMD----LFNSLKKNPQTASIPVIALSGRATA---------KEEAQLLDMGFIDFIAK---PVNA 115 (147)
T ss_dssp CCSEEEEESCCSSSCHHH----HHHHHHTSTTTTTSCEEEEESSCCH---------HHHHHHHHHTCSEEEES---SCCH
T ss_pred CCCEEEEcCCCCCCCHHH----HHHHHHcCcccCCCCEEEEeCCCCH---------HHHHHHHhCCCCEEEeC---CCCH
Confidence 45555554444 444443 4444544222367899888876542 11222233454333222 4456
Q ss_pred HHHHHHHHHHHHhhh
Q psy14042 107 DELLVGILNQIRLKR 121 (238)
Q Consensus 107 ~elf~~i~~~l~~~~ 121 (238)
+++...|...+...+
T Consensus 116 ~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 116 IRLSARIKRVLKLLY 130 (147)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 677666665554443
No 464
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=20.40 E-value=1e+02 Score=19.93 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=18.8
Q ss_pred eEEEEeeCceEEEEeCCCCeee
Q psy14042 178 NLLFAIKGGQVHLYDYEGNFMN 199 (238)
Q Consensus 178 ~~~~g~~~g~~~~~d~~g~~~~ 199 (238)
..++|..+|.|+++-.+|.-+.
T Consensus 19 A~flg~~dgki~LhK~nGv~I~ 40 (68)
T 2hbp_A 19 AEFIGCAKGKIHLHKANGVKIA 40 (68)
T ss_dssp EEEEEEETTEEEEECTTSCEEE
T ss_pred EEEEEEeCCEEEEEecCCcEEE
Confidence 4569999999999999998764
No 465
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=20.25 E-value=1.2e+02 Score=23.34 Aligned_cols=32 Identities=9% Similarity=-0.019 Sum_probs=22.0
Q ss_pred EEEEeCCCCCeEEEEeeCceEEEEeCCCCeeee
Q psy14042 168 LGVQWTSDSQNLLFAIKGGQVHLYDYEGNFMNK 200 (238)
Q Consensus 168 ~~~~~~~~~~~~~~g~~~g~~~~~d~~g~~~~~ 200 (238)
....+++++. ++++..+|.|.+||..|.....
T Consensus 70 ~~i~~~~~g~-l~v~~~~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 70 QGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CCEEECTTCC-EEEEETTTEEEEECTTCSCCEE
T ss_pred ceeEECCCCC-EEEEcCCCEEEEEeCCCceEee
Confidence 3455677766 6666668888888888876543
No 466
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=20.19 E-value=1.7e+02 Score=23.75 Aligned_cols=37 Identities=8% Similarity=0.154 Sum_probs=28.1
Q ss_pred eeEEEEeCCCCCeEEEEe--eCceEEEEeCCCCeeeeee
Q psy14042 166 SMLGVQWTSDSQNLLFAI--KGGQVHLYDYEGNFMNKVS 202 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~g~--~~g~~~~~d~~g~~~~~~~ 202 (238)
....+.++|++..+|+.. .++.|++||.+|.++..+.
T Consensus 144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~ 182 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWG 182 (329)
T ss_dssp SEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEEC
T ss_pred CCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEec
Confidence 345678888556666665 5899999999999987664
No 467
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=20.14 E-value=1.8e+02 Score=23.59 Aligned_cols=38 Identities=13% Similarity=0.380 Sum_probs=31.3
Q ss_pred eeEEEEeCCCCCeEEE-EeeCceEEEEeCCCCeeeeeee
Q psy14042 166 SMLGVQWTSDSQNLLF-AIKGGQVHLYDYEGNFMNKVSM 203 (238)
Q Consensus 166 ~~~~~~~~~~~~~~~~-g~~~g~~~~~d~~g~~~~~~~~ 203 (238)
.+....|+|++..++. .-.+++|..+|.+|..+.++.+
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l 66 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPL 66 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEEC
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEec
Confidence 5667788888887775 7778999999999999888866
Done!