RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14042
(238 letters)
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 46.8 bits (110), Expect = 2e-07
Identities = 23/86 (26%), Positives = 42/86 (48%)
Query: 32 LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
+++ ++ + S+ ++ ++ P I+V NK+DL R VSS + + LA +
Sbjct: 79 ILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEW 138
Query: 92 KVKFIEVSVGIHHNVDELLVGILNQI 117
F+E S VDEL I+ Q+
Sbjct: 139 GCPFMETSAKSKTMVDELFAEIVRQM 164
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 46.8 bits (110), Expect = 3e-07
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 19 EQYEKLTSSD---ETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75
E+Y ++TS+ G ++V+ + K + + ++ + ++V NK DL
Sbjct: 64 ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 123
Query: 76 ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122
RAV + +A+ A + FIE S NV+E IL +I S
Sbjct: 124 LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVS 170
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 46.4 bits (109), Expect = 5e-07
Identities = 17/92 (18%), Positives = 35/92 (38%)
Query: 31 GLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAAS 90
G ++V+ + + + + +++ NK DL R V ++ + A
Sbjct: 78 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFARE 137
Query: 91 FKVKFIEVSVGIHHNVDELLVGILNQIRLKRS 122
+ F+E S NV+E + +I K
Sbjct: 138 HGLIFMETSAKTACNVEEAFINTAKEIYRKIQ 169
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 45.6 bits (107), Expect = 8e-07
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Query: 8 HSGKVRAIIWN----EQYEKLTSSDETGLIIVWMLYKPSYH---RVEQDVIRLHEEGYLR 60
KV+ +W+ E++ +T + + +LY + Q + E
Sbjct: 52 DGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH 111
Query: 61 TRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
+++ NK+D A R V +D + LA + + F+E S NVD I +++
Sbjct: 112 DVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 169
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 45.4 bits (106), Expect = 1e-06
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 32 LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
L+ + +G + + P ++V NK D + +R V S +A+ LA ++
Sbjct: 79 LVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW 138
Query: 92 KVKFIEVSVGIHHNVDELLVGILNQIRLKRSL 123
K F+E S ++HNV EL +LN + +R++
Sbjct: 139 KCAFMETSAKLNHNVKELFQELLNLEK-RRTV 169
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 45.3 bits (106), Expect = 1e-06
Identities = 24/107 (22%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 19 EQYEKLTSS---DETGLIIVW-MLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLA 74
E++ LT++ D G ++++ + + S+ V + +L Y +++ NK DL
Sbjct: 75 ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 134
Query: 75 RARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
R V+ + A+ LA + + + E S NV++ + +L+ I +
Sbjct: 135 DQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 181
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 44.4 bits (103), Expect = 2e-06
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 34 IVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKV 93
+ + + S+ + + I+L P I+V NK DL R R VS + + A F
Sbjct: 84 VYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDC 143
Query: 94 KFIEVSVGIHHNVDELLVGILNQIRLKR 121
KFIE S + HNV EL GI+ Q+RL+R
Sbjct: 144 KFIETSAAVQHNVKELFEGIVRQVRLRR 171
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 44.3 bits (103), Expect = 2e-06
Identities = 32/83 (38%), Positives = 45/83 (54%)
Query: 39 YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEV 98
K S+ + + ++L P I+V NK DL R+R VS + + A F KFIE
Sbjct: 83 DKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIET 142
Query: 99 SVGIHHNVDELLVGILNQIRLKR 121
S +HHNV L G++ QIRL+R
Sbjct: 143 SAALHHNVQALFEGVVRQIRLRR 165
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 44.2 bits (103), Expect = 3e-06
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 36 WMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKF 95
M + + ++R+ E+ + P ++V NK DL R VS ++AKN A + V +
Sbjct: 87 EMESFAATADFREQILRVKEDENV---PFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNY 143
Query: 96 IEVSVGIHHNVDELLVGILNQIRLK 120
+E S NVD++ ++ +IR +
Sbjct: 144 VETSAKTRANVDKVFFDLMREIRAR 168
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 43.3 bits (101), Expect = 4e-06
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 3/102 (2%)
Query: 19 EQYEKLTSSDETGLIIVWMLYKPSYHR---VEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75
E++ +T S G M+Y + + I++ NK DL
Sbjct: 64 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 123
Query: 76 ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
R V+ ++AK A + F+E S NV++ + +I
Sbjct: 124 QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 42.7 bits (99), Expect = 7e-06
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 32 LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
L++ + + S+ + + ++ P I++ NK DL R V+ ++ + LA
Sbjct: 81 LLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQL 140
Query: 92 KVKFIEVSVGIHHNVDELLVGILNQIR 118
KV ++E S I NVD+ ++ IR
Sbjct: 141 KVTYMEASAKIRMNVDQAFHELVRVIR 167
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 42.9 bits (100), Expect = 8e-06
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 3/111 (2%)
Query: 19 EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR 75
E++ LT S G+I+V+ + + + + E R ++
Sbjct: 67 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 126
Query: 76 ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKRSLVQT 126
R V + A + FIE S V ++ +I L ++
Sbjct: 127 NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWES 177
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 41.3 bits (96), Expect = 2e-05
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 11 KVRAIIW----NEQYEKLTSSDET---GLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP 63
+++ IW E++ +T++ G+++V+ + ++ IR EE
Sbjct: 54 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVE 113
Query: 64 AIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120
+I+ NK D+ R VS + + LA + +KF+E S + NV+ + I+ K
Sbjct: 114 KMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 170
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 41.2 bits (95), Expect = 3e-05
Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 3/121 (2%)
Query: 1 MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLR 60
+ +G+ EQY + I ++ ++R+ +
Sbjct: 54 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD-- 111
Query: 61 TRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120
P ++V NK DL R V +A AS V + E S + NVDE ++ +R
Sbjct: 112 -FPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 170
Query: 121 R 121
+
Sbjct: 171 Q 171
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 40.8 bits (94), Expect = 4e-05
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 32 LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASF 91
LI+ + K S+ V++ + + P I+VANK+DL R V+ K +A +
Sbjct: 80 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKY 139
Query: 92 KVKFIEVSV-GIHHNVDELLVGILNQIR 118
+ +IE S NVD+ ++ IR
Sbjct: 140 NIPYIETSAKDPPLNVDKTFHDLVRVIR 167
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 39.6 bits (91), Expect = 8e-05
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 33 IIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFK 92
++ + + S+ V L E + I+V NK DL +R VS+++ + LA
Sbjct: 78 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELA 137
Query: 93 VKFIEVSVGI-HHNVDELLVGILNQIRLKR 121
F E S N+ E+ + ++R +R
Sbjct: 138 CAFYECSACTGEGNITEIFYELCREVRRRR 167
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 39.0 bits (90), Expect = 1e-04
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 10 GKVRAIIW----NEQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTR 62
KV+ IW E++ +T S LI+ + + R + +R E+
Sbjct: 52 EKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKV 111
Query: 63 PAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
++V NKIDLA R VS Q A+ + + + ++E S NV++L + + ++ +
Sbjct: 112 ITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 170
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 39.3 bits (90), Expect = 1e-04
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 33 IIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA---RAVSSQDAKNLAA 89
++V+ + KP + ++ E + +V NKID+ + R V+ ++ + LA
Sbjct: 80 LVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAE 139
Query: 90 SFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120
+ F E S NV+++ +GI +I LK
Sbjct: 140 EKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 39.1 bits (90), Expect = 1e-04
Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 4/112 (3%)
Query: 9 SGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVA 68
+G+ R Y + + G ++V+ + + + + + I+
Sbjct: 62 AGQERFRSVTRSYYRGAA----GALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 117
Query: 69 NKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120
NK DL R V+ +A A ++ F+E S NV+E V +I K
Sbjct: 118 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNK 169
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 39.1 bits (90), Expect = 2e-04
Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 7/146 (4%)
Query: 3 QSLQGHSGKVRAIIWN----EQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHE 55
++++ V+ IW+ E++ +TSS G+IIV+ + + ++ +
Sbjct: 46 KTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEID 105
Query: 56 EGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILN 115
T ++V NK DL R V AK A + K+ F+E S NV++ + +
Sbjct: 106 RYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMAR 165
Query: 116 QIRLKRSLVQTGGAQAAAPWKSNTTL 141
QI+ S K N L
Sbjct: 166 QIKESMSQQNLNETTQKKEDKGNVNL 191
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 38.8 bits (89), Expect = 2e-04
Identities = 10/90 (11%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 33 IIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA---RAVSSQDAKNLAA 89
++V + +++ ++ LR +I ANK D+ +S
Sbjct: 88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIK 147
Query: 90 SFKVKFIEVSVGIHHNVDELLVGILNQIRL 119
+ + + L +++++++
Sbjct: 148 DHQWHIQACCALTGEGLCQGLEWMMSRLKI 177
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 38.0 bits (87), Expect = 3e-04
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 8 HSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIV 67
+G+ +QY + I S+ + Q ++ P ++V
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNT---KSFEDIHQYREQIKRVKDSDDVPMVLV 114
Query: 68 ANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
NK D AR V S+ A++LA S+ + +IE S V++ ++ +IR
Sbjct: 115 GNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 38.1 bits (87), Expect = 3e-04
Identities = 12/86 (13%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 36 WMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARA---RAVSSQDAKNLAASFK 92
+ + ++ L ++ L+ P +++ NK DL A + + + + +
Sbjct: 79 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDRE 138
Query: 93 VKFIEVSVGIHHNVDELLVGILNQIR 118
+ +S N+D L ++ +
Sbjct: 139 ICCYSISCKEKDNIDITLQWLIQHSK 164
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 37.2 bits (85), Expect = 5e-04
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 4/117 (3%)
Query: 1 MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLR 60
+ L +G+ R Y + +++ + S+ + + + + E
Sbjct: 49 IRLQLWDTAGQERFRSLIPSYIR---DSAAAVVVYDITNVNSFQQTTKWIDDVRTE-RGS 104
Query: 61 TRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
++V NK DLA R VS ++ + A V FIE S +NV +L + +
Sbjct: 105 DVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 36.3 bits (83), Expect = 0.001
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 8 HSGKVRAIIW----NEQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLR 60
+ KV+ IW E++ +T++ G+I+V+ + + + E
Sbjct: 47 NGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND 106
Query: 61 TRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120
++V NK D+ R V++ + LA + FIE S NV+E+ + I+ K
Sbjct: 107 EAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 165
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 36.2 bits (82), Expect = 0.002
Identities = 14/125 (11%), Positives = 38/125 (30%)
Query: 1 MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLR 60
+ + +G+ R + + + + + +
Sbjct: 51 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 110
Query: 61 TRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIRLK 120
P +++ NKIDL + + + + + + E S NV++ I +
Sbjct: 111 NFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 170
Query: 121 RSLVQ 125
+ V+
Sbjct: 171 ETEVE 175
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 36.0 bits (82), Expect = 0.002
Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 7/124 (5%)
Query: 1 MNQSLQGHSGKVRAIIW----NEQYEKLTSS---DETGLIIVWMLYKPSYHRVEQDVIRL 53
+++ + +++ IW E+Y +T++ G I+++ + QD
Sbjct: 43 KVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQ 102
Query: 54 HEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGI 113
+ ++V NK D+ R VSS+ + LA +F E S + NV + +
Sbjct: 103 IKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 162
Query: 114 LNQI 117
++ I
Sbjct: 163 VDVI 166
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 35.7 bits (81), Expect = 0.002
Identities = 15/117 (12%), Positives = 35/117 (29%), Gaps = 16/117 (13%)
Query: 17 WNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEE---GYLRTRPAIIVANKIDL 73
E Y++L + + + Q+V Y P +++ +IDL
Sbjct: 66 GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 125
Query: 74 ------------ARARAVSSQDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQI 117
+ + + + + LA ++E S + + + I
Sbjct: 126 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 35.3 bits (80), Expect = 0.003
Identities = 17/118 (14%), Positives = 43/118 (36%), Gaps = 2/118 (1%)
Query: 1 MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLR 60
+ + +G+ R + + + + + +++ I +
Sbjct: 55 VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPE 114
Query: 61 TRPAIIVANKIDLARARAVSSQDAKNLAAS-FKVKFIEVSVGIHHNVDELLVGILNQI 117
+ P +I+ NKID++ R VS+++A+ + E S NV + ++
Sbjct: 115 SFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 35.0 bits (79), Expect = 0.003
Identities = 15/123 (12%), Positives = 35/123 (28%), Gaps = 16/123 (13%)
Query: 11 KVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEE---GYLRTRPAIIV 67
+ E Y++L + + + ++V + P I+V
Sbjct: 56 GLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV 115
Query: 68 ANKIDLARARAVSSQD------------AKNLAASFK-VKFIEVSVGIHHNVDELLVGIL 114
K+DL + + +A VK++E S + + +
Sbjct: 116 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175
Query: 115 NQI 117
+
Sbjct: 176 RAV 178
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 35.0 bits (79), Expect = 0.004
Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 33 IIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLAR---ARAVSSQDAKNLAA 89
+V K +++ + +E L+ ++ ANK D A VS +
Sbjct: 90 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELK 149
Query: 90 SFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
+ S + E L +++ I+ ++
Sbjct: 150 DRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ 181
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 34.2 bits (77), Expect = 0.005
Identities = 25/85 (29%), Positives = 39/85 (45%)
Query: 33 IIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFK 92
IIV+ + K ++ +R + + I NK DL R V +DAK+ A S
Sbjct: 81 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIH 140
Query: 93 VKFIEVSVGIHHNVDELLVGILNQI 117
F+E S N++EL + I +I
Sbjct: 141 AIFVETSAKNAININELFIEISRRI 165
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 34.2 bits (77), Expect = 0.005
Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 3/103 (2%)
Query: 19 EQYEKLTSSDETGLIIVWMLYKPSYHRVEQDV---IRLHEEGYLRTRPAIIVANKIDLAR 75
E+Y L G ++Y + ++ + + NK DLA
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 76 ARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
RAV Q+A++ A + F+E S NV+E+ + I ++
Sbjct: 126 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 34.3 bits (77), Expect = 0.006
Identities = 16/127 (12%), Positives = 38/127 (29%), Gaps = 7/127 (5%)
Query: 1 MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGY-- 58
+G + + + + + + + + QD R +
Sbjct: 39 KTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVE 98
Query: 59 --LRTRPAIIVANKIDLARARAVSSQDAK---NLAASFKVKFIEVSVGIHHNVDELLVGI 113
L +I ANK DL A + ++ + S + S ++ + +
Sbjct: 99 ERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 158
Query: 114 LNQIRLK 120
L+ I +
Sbjct: 159 LDDISSR 165
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 34.3 bits (77), Expect = 0.006
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 66 IVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQIR 118
+V NK DL R +S ++ K LA S+ F+E S + ++ I+ +
Sbjct: 114 LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE 166
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1
{Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 35.0 bits (78), Expect = 0.006
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 1 MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 36
++Q GH+ + A+ + + L S+D G I W
Sbjct: 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW 39
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 34.1 bits (77), Expect = 0.007
Identities = 22/90 (24%), Positives = 42/90 (46%)
Query: 28 DETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNL 87
D G I+V+ + + ++ ++ + IV NKIDL + R VS Q+A++
Sbjct: 75 DSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESY 134
Query: 88 AASFKVKFIEVSVGIHHNVDELLVGILNQI 117
A S K S + ++EL + + ++
Sbjct: 135 AESVGAKHYHTSAKQNKGIEELFLDLCKRM 164
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 34.2 bits (77), Expect = 0.007
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 33 IIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFK 92
++ + + +++ ++ ++ P I+V NK DL R V + +NLA +
Sbjct: 80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWC 139
Query: 93 -VKFIEVSVGIHHNVDELLVGILNQIR 118
F+E S NV+E+ ++ QI
Sbjct: 140 NCAFLESSAKSKINVNEIFYDLVRQIN 166
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 34.3 bits (77), Expect = 0.008
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 3 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 36
+L GH V +I++ + + S+ E I VW
Sbjct: 11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW 44
Score = 30.9 bits (68), Expect = 0.13
Identities = 5/34 (14%), Positives = 15/34 (44%)
Query: 3 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 36
++L H V ++ +++ + + + VW
Sbjct: 283 KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
Score = 30.1 bits (66), Expect = 0.20
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 3 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 36
+L GH VR ++++ + + S + + VW
Sbjct: 241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 274
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 33.5 bits (75), Expect = 0.010
Identities = 15/93 (16%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 32 LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS---SQDAKNLA 88
+ +V + + +++ + EE LR ++ ANK D+ +A S +
Sbjct: 77 IYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPAL 136
Query: 89 ASFKVKFIEVSVGIHHNVDELLVGILNQIRLKR 121
K + + S +DE + ++ ++ ++
Sbjct: 137 KDRKWQIFKTSATKGTGLDEAMEWLVETLKSRQ 169
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 33.4 bits (75), Expect = 0.011
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 63 PAIIVANKIDLARAR---AVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
P +I ANK DL A ++ + + S V + + + +
Sbjct: 119 PVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 33.0 bits (74), Expect = 0.015
Identities = 12/94 (12%), Positives = 24/94 (25%), Gaps = 3/94 (3%)
Query: 32 LIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKID--LARARAVSSQDAKNLAA 89
+ + + +V + + R V A+ L A
Sbjct: 77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCA 136
Query: 90 SFK-VKFIEVSVGIHHNVDELLVGILNQIRLKRS 122
K + E NVD + + ++ R
Sbjct: 137 DMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRK 170
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 32.7 bits (73), Expect = 0.019
Identities = 7/87 (8%), Positives = 27/87 (31%), Gaps = 2/87 (2%)
Query: 37 MLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFI 96
P ++ NK+D+ + + +++
Sbjct: 83 FDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVF--HRKKNLQYY 140
Query: 97 EVSVGIHHNVDELLVGILNQIRLKRSL 123
++S ++N ++ + + ++ +L
Sbjct: 141 DISAKSNYNFEKPFLWLARKLIGDPNL 167
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 32.2 bits (72), Expect = 0.033
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 3/83 (3%)
Query: 39 YKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARAR---AVSSQDAKNLAASFKVKF 95
+ Q++ R+ + +R +I ANK DL A + +
Sbjct: 91 DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYV 150
Query: 96 IEVSVGIHHNVDELLVGILNQIR 118
+ E L + + +
Sbjct: 151 QPSCATSGDGLYEGLTWLTSNYK 173
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 32.3 bits (72), Expect = 0.034
Identities = 17/117 (14%), Positives = 34/117 (29%), Gaps = 16/117 (13%)
Query: 17 WNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAI---IVANKIDL 73
E Y++L + + + ++V P +V +IDL
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119
Query: 74 ARARAVSS------------QDAKNLAASFK-VKFIEVSVGIHHNVDELLVGILNQI 117
+ + A+ LA K VK++E S + + +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 371
Score = 32.1 bits (71), Expect = 0.045
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 3 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYH 44
L+ H+G+V + W ++ + VW L ++
Sbjct: 45 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86
Score = 27.1 bits (58), Expect = 2.3
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 170 VQWTSDSQNLLFAIKGGQVHLYDYEGNFMNKVSMWSG 206
W D + +VH+Y+ GN +V
Sbjct: 13 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE 49
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 31.6 bits (70), Expect = 0.068
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 3 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRV 46
++L+GH K+ A+ W L S+ + G +I+W Y +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA 92
Score = 31.2 bits (69), Expect = 0.088
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 3 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 36
L GH +V + + + + + +W
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 31.2 bits (69), Expect = 0.072
Identities = 16/123 (13%), Positives = 34/123 (27%), Gaps = 2/123 (1%)
Query: 1 MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLR 60
+ +G+ R + + + + + +
Sbjct: 52 ATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPE 111
Query: 61 TRPAIIVANKIDLARARAVSSQDAKNLAAS--FKVKFIEVSVGIHHNVDELLVGILNQIR 118
T P +I+ NKID ++ + S+ + A + S NVD I
Sbjct: 112 TFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 171
Query: 119 LKR 121
+
Sbjct: 172 QQN 174
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 30.7 bits (67), Expect = 0.12
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 3 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 36
+++ GH+ + A+ N L S G I+ W
Sbjct: 7 KTISGHNKGITALTVN----PLISGSYDGRIMEW 36
Score = 28.4 bits (61), Expect = 0.67
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 3 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 36
++L H V ++W ++S + I W
Sbjct: 252 KALNAHKDGVNNLLWETPSTLVSSGAD-ACIKRW 284
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 30.0 bits (66), Expect = 0.15
Identities = 5/49 (10%), Positives = 14/49 (28%)
Query: 69 NKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
+ + A ++ + + + E L + NQ+
Sbjct: 112 DLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 30.0 bits (66), Expect = 0.21
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 3/82 (3%)
Query: 45 RVEQDVIRLHEEGYLRTRPAIIVANKIDLARARA---VSSQDAKNLAASFKVKFIEVSVG 101
+ + + +I NK D+A A++ + Q K L + S
Sbjct: 92 AEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL 151
Query: 102 IHHNVDELLVGILNQIRLKRSL 123
+ +G + L
Sbjct: 152 DSSSTAPAQLGKKGKEFEFSQL 173
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 29.8 bits (65), Expect = 0.26
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 3 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 36
++L HSG+V + ++E + SS I++W
Sbjct: 261 RTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIW 292
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 28.5 bits (62), Expect = 0.47
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 27 SDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKN 86
++V+ R + P +V NKIDL + +++A+
Sbjct: 73 RGAQACVLVFSTTDR-ESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEG 131
Query: 87 LAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
LA K++F SV NV E+ + +
Sbjct: 132 LAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 29.0 bits (64), Expect = 0.49
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 56 EGYLRTRPAIIVANKIDLA 74
E L+ +P I++ NK D A
Sbjct: 37 EDILKNKPRIMLLNKADKA 55
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 28.7 bits (62), Expect = 0.68
Identities = 5/52 (9%), Positives = 13/52 (25%), Gaps = 2/52 (3%)
Query: 3 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLH 54
+ + H + ++ + S D + VW +
Sbjct: 8 NAGKAHDADIFSVSACNSFTVSCSGDGY--LKVWDNKLLDNENPKDKSYSHF 57
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 27.9 bits (60), Expect = 1.1
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 3 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 36
Q Q + I L + G + V+
Sbjct: 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVY 38
>d1s1da_ b.67.3.1 (A:) Soluble calcium-activated nucleotidase SCAN-1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 317
Score = 26.6 bits (59), Expect = 2.5
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 7 GHSGKVRAIIWNEQYEKLTSS 27
G+ G V W Y L ++
Sbjct: 168 GYKGSVDHENWVSNYNALRAA 188
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 26.5 bits (57), Expect = 2.5
Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 16/110 (14%)
Query: 17 WNEQYEKLTSSDETGLIIVWMLYKPSYHRVEQDVIRLHEEGYLRTRP---AIIVANKIDL 73
E Y++L ++ M + +++ P I+V NK DL
Sbjct: 59 GLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 118
Query: 74 ARARAV------------SSQDAKNLAASFK-VKFIEVSVGIHHNVDELL 110
++ +++A ++E S V E+
Sbjct: 119 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 168
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 26.8 bits (58), Expect = 2.6
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 47 EQDVIRLHEEGYLRTRPAIIVANKIDLARARAVSSQDAKNLAASFKVKFIEVSVGIHHNV 106
+ D++ E +P +I ANK D A + + I S +
Sbjct: 200 QDDLLAFASEIRRVNKPMVIAANKADAASDEQI--KRLVREEEKRGYIVIPTSAAAELTL 257
Query: 107 DEL 109
+
Sbjct: 258 RKA 260
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 327
Score = 26.6 bits (59), Expect = 2.6
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Query: 174 SDSQNLLFAI-KGGQVHLYDYEGN---FMNKVS 202
S+ +++F I K G +HLYD E +MN++S
Sbjct: 264 SEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS 296
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 25.9 bits (55), Expect = 4.7
Identities = 7/55 (12%), Positives = 18/55 (32%), Gaps = 9/55 (16%)
Query: 147 VIVGSVDGN-RIW----GKEFKKT----SMLGVQWTSDSQNLLFAIKGGQVHLYD 192
+ D W G ++ S+L + D + ++ + +Y+
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
Score = 25.2 bits (53), Expect = 7.9
Identities = 3/30 (10%), Positives = 9/30 (30%)
Query: 7 GHSGKVRAIIWNEQYEKLTSSDETGLIIVW 36
S V + + + + + V+
Sbjct: 304 KESSSVLSCDISVDDKYIVTGSGDKKATVY 333
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 25.4 bits (54), Expect = 4.9
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 62 RPAIIVANKIDLARARAVSSQDAK----NLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
P I+ NK+D + + FI +S N++ L I I
Sbjct: 122 IPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 181
Query: 118 R 118
R
Sbjct: 182 R 182
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 25.4 bits (54), Expect = 5.0
Identities = 13/100 (13%), Positives = 28/100 (28%), Gaps = 15/100 (15%)
Query: 33 IIVWMLYKPSYHRVEQDVIRLHEEGYLRTRPAIIVANKIDLARARAVS------------ 80
+V ++++ L + + P +I+ NKID A +
Sbjct: 86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQT 145
Query: 81 ---SQDAKNLAASFKVKFIEVSVGIHHNVDELLVGILNQI 117
+ + ++ SV E + I
Sbjct: 146 TGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 25.5 bits (54), Expect = 6.3
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 6/40 (15%)
Query: 3 QSLQGHSGKVRAI------IWNEQYEKLTSSDETGLIIVW 36
LQGH V ++ +Y + +W
Sbjct: 344 LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 25.5 bits (54), Expect = 6.9
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 3 QSLQGHSGKVRAII-WNEQYEKLTSSDETGLIIVW 36
+ L+GH V + + + S + + VW
Sbjct: 10 KVLKGHDDHVITCLQFCGNR--IVSGSDDNTLKVW 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.386
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 852,850
Number of extensions: 36589
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 74
Length of query: 238
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 155
Effective length of database: 1,268,006
Effective search space: 196540930
Effective search space used: 196540930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)