Query psy14045
Match_columns 287
No_of_seqs 134 out of 1334
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 18:11:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02969 mam_aldehyde_ox alde 100.0 2.4E-52 5.2E-57 452.2 26.8 256 11-272 1071-1330(1330)
2 TIGR02965 xanthine_xdhB xanthi 100.0 2.6E-51 5.7E-56 424.9 25.0 234 11-252 501-757 (758)
3 PLN02906 xanthine dehydrogenas 100.0 5.7E-51 1.2E-55 441.5 26.7 243 11-255 1066-1315(1319)
4 TIGR02416 CO_dehy_Mo_lg carbon 100.0 2.4E-49 5.2E-54 410.9 23.1 213 11-247 529-769 (770)
5 TIGR03194 4hydrxCoA_A 4-hydrox 100.0 4.3E-49 9.2E-54 407.8 23.6 224 11-249 498-746 (746)
6 PRK09800 putative hypoxanthine 100.0 7.4E-49 1.6E-53 413.7 24.1 214 12-251 719-955 (956)
7 TIGR03313 Se_sel_red_Mo probab 100.0 9.6E-49 2.1E-53 412.9 23.6 213 12-251 715-951 (951)
8 PRK09970 xanthine dehydrogenas 100.0 1.5E-48 3.3E-53 404.5 23.5 214 12-252 516-756 (759)
9 TIGR03196 pucD xanthine dehydr 100.0 3E-47 6.5E-52 395.0 21.1 216 11-246 521-768 (768)
10 PLN00192 aldehyde oxidase 100.0 1.7E-46 3.8E-51 406.9 24.2 234 11-257 1092-1337(1344)
11 COG1529 CoxL Aerobic-type carb 100.0 1.5E-44 3.2E-49 373.3 20.4 226 9-250 494-730 (731)
12 COG4631 XdhB Xanthine dehydrog 100.0 4.1E-45 8.8E-50 355.8 12.8 236 12-252 519-774 (781)
13 TIGR03311 Se_dep_Molyb_1 selen 100.0 2.1E-41 4.5E-46 354.4 18.0 200 11-246 647-847 (848)
14 KOG0430|consensus 100.0 4.9E-41 1.1E-45 348.5 18.0 223 18-256 1032-1254(1257)
15 PF02738 Ald_Xan_dh_C2: Molybd 100.0 5.5E-35 1.2E-39 293.1 10.3 167 11-178 373-547 (547)
16 PF08529 NusA_N: NusA N-termin 47.5 28 0.0006 28.5 3.9 23 102-124 42-64 (122)
17 PF04143 Sulf_transp: Sulphur 23.0 62 0.0013 21.5 1.7 18 135-152 3-20 (43)
18 PRK12329 nusA transcription el 20.6 1.3E+02 0.0028 30.5 4.1 23 101-123 60-82 (449)
No 1
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=100.00 E-value=2.4e-52 Score=452.16 Aligned_cols=256 Identities=48% Similarity=0.850 Sum_probs=221.6
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHHHHHHHhccchhcCCCCCHHHHHHHhhcCCcceEEEEEeecCCcccccccCCCc
Q psy14045 11 IQPLYWFFNSERVGNEYWSICSQDACSKLNERLKPYKEKNPTGKWQDWVKAAFFDRTSLAATGYFKTPDIGYDMKKNEGA 90 (287)
Q Consensus 11 ~~~~~~~~t~~Sr~T~~~G~Av~~Aa~~Lk~rL~~~aa~~~~~~~~el~~~a~~~~~~l~~~~~y~~p~~~~d~~~~~g~ 90 (287)
..|+.+ +|+|||+|+++|+||++||++||+||+++++..++.+|.+++..++..+++|.+.++|..+...++.+...+.
T Consensus 1071 ~~p~~~-gt~gSr~t~~~G~Av~~A~~~l~~rl~~~aa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 1149 (1330)
T TIGR02969 1071 TVPNTN-ASGGSVVADLNGLAVKDACQTLLKRLEPIISKNPQGTWKDWAQTAFDQSISLSAVGYFRGYESNINWEKGEGH 1149 (1330)
T ss_pred CCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHhhccCCCceEEEEEecCCcccccccCcCCC
Confidence 456544 9999999999999999999999999999988877889999886566556789999988655544444333344
Q ss_pred cccccceeeEEEEEEEeCCCCcEEEEEEEEEeecccccChhhhhhhhHhHHHhhHHHHhccceEEcCCCcccCCCCCCCC
Q psy14045 91 IFNYFGYGASVSEVEIDCLTGDHQVRATEIVMDVGESLNPAIDVGQVEGAFMQGYGLYVMEELMFSPSGVLYTRGPGTYK 170 (287)
Q Consensus 91 ~~~~~~~~A~~aEVeVD~~TG~v~V~r~~~~~D~G~~iNP~~~~gQI~Gg~~qGlG~AL~E~~~~d~~G~~~~~~~~~Y~ 170 (287)
++.+|+||+|++|||||++||+++|+|+++++|||++|||.+++|||+||++||||++|+|++.||++|+++|.+|+||+
T Consensus 1150 ~~~~~~~ga~~aeVEVD~~TG~v~vlr~~~v~D~G~~INP~~~~GQieGg~vqGiG~al~Ee~~yd~~G~~lt~~~~dY~ 1229 (1330)
T TIGR02969 1150 PFEYFVYGAACSEVEIDCLTGDHKNIRTDIVMDVGHSINPALDIGQVEGAFIQGMGLYTIEELSYSPQGILYSRGPNQYK 1229 (1330)
T ss_pred CccccceeeEEEEEEEecCCCCEEEEEEEEEEeCCcccCHHHHhHhHHHHHHHHHHHHHcceeEECCCCCCCCCCccccc
Confidence 56689999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred CCCCCCCCCeeEEEEeeCCCCCCCCCCccccCCCCcc---hhH-HHHHHHHHHHHHhhhhhcCCCCcccccCCCCHHHHH
Q psy14045 171 IPGFADIPAEFNVSLLKGAPNPRAVYSSKAVGEPPLL---LAS-SVYFAIRDAIDAYRKQELGREDYYRLDSPATPAKIR 246 (287)
Q Consensus 171 iP~~~d~P~~~~v~~ve~~~~~~~p~GAkGvGE~~~~---~~a-Ai~~AI~~Ai~~a~~~~~g~~g~r~~~lP~tpe~i~ 246 (287)
+|++.|+|.+|+++++++++++.+|||+||+||++++ +++ ||+|||+||++. .|..|++++++|+|||+|+
T Consensus 1230 iPt~~DiP~~~~v~~~~~~~~~~~p~GaKGvGE~~~~~a~~v~~AI~nAI~~A~g~-----~g~~~~~~~~~P~Tperv~ 1304 (1330)
T TIGR02969 1230 IPAICDIPTELHISFLPPSEHSNTLYSSKGLGESGVFLGCSVFFAIHDAVRAARQE-----RGLSGPWKLTSPLTPEKIR 1304 (1330)
T ss_pred CCchhhcCCCEEEEEEeCCCCCCCCCccccCcccccccCccHHHHHHHHHHHHHhh-----cCCCcCccCCCCCCHHHHH
Confidence 9999999944999999756688899999999999999 456 888888888742 2444567999999999999
Q ss_pred HHhhcccccCCCCCCCCCCCcceeee
Q psy14045 247 LLCEDSITKEFPAPEPGSYKPWNISI 272 (287)
Q Consensus 247 ~al~~~~~~~~~~~~~~~~~~~~~~~ 272 (287)
+++.......+...++.+++||+|.+
T Consensus 1305 ~al~~~~~~~~~~~~~~~~~~~~~~~ 1330 (1330)
T TIGR02969 1305 MACEDKFTKMIPRDEPGSYVPWNVPV 1330 (1330)
T ss_pred HHhhhhHHHhhhccCccCCccceeeC
Confidence 99998877777777778899999863
No 2
>TIGR02965 xanthine_xdhB xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase.
Probab=100.00 E-value=2.6e-51 Score=424.93 Aligned_cols=234 Identities=43% Similarity=0.704 Sum_probs=202.8
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHHHHHHHhccchhcCC-------------------CCCHHHHHHHhhcCCcceEE
Q psy14045 11 IQPLYWFFNSERVGNEYWSICSQDACSKLNERLKPYKEKNP-------------------TGKWQDWVKAAFFDRTSLAA 71 (287)
Q Consensus 11 ~~~~~~~~t~~Sr~T~~~G~Av~~Aa~~Lk~rL~~~aa~~~-------------------~~~~~el~~~a~~~~~~l~~ 71 (287)
..|..+ +|+|||+|++.|+||++||++||+||+++|++.+ .++|.+++..++..+..+.+
T Consensus 501 ~~p~~~-gT~gSr~t~~~g~Av~~Aa~~lr~~l~~~Aa~~l~~~~~~l~~~~g~v~~~~~~~~~~~l~~~a~~~~~~l~~ 579 (758)
T TIGR02965 501 KVPNTS-ATAASSGSDLNGMAAQDAARQIKERLVAFAAEKWQVPAEDVRFAPNHVRVGEQRVPFAELVQQAYFARVQLSS 579 (758)
T ss_pred CCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHEEEECCEEEeCCCccCHHHHHHHHhhcCCCcEE
Confidence 456544 9999999999999999999999999999887632 26788988766544557899
Q ss_pred EEEeecCCcccccccCCCccccccceeeEEEEEEEeCCCCcEEEEEEEEEeecccccChhhhhhhhHhHHHhhHHHHhcc
Q psy14045 72 TGYFKTPDIGYDMKKNEGAIFNYFGYGASVSEVEIDCLTGDHQVRATEIVMDVGESLNPAIDVGQVEGAFMQGYGLYVME 151 (287)
Q Consensus 72 ~~~y~~p~~~~d~~~~~g~~~~~~~~~A~~aEVeVD~~TG~v~V~r~~~~~D~G~~iNP~~~~gQI~Gg~~qGlG~AL~E 151 (287)
.++|..+...+|..+..+.++.+++|++|++|||||++||+++|+|+++++|||++|||.+++|||+||++||||+||+|
T Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~~eVeVD~~TG~v~v~~~~~~~D~G~~iNP~~~~GQi~Gg~~qGiG~aL~E 659 (758)
T TIGR02965 580 TGFYKTPKIHWDRAKGRGRPFYYFAYGAACSEVSVDTLTGEYKVLRADILHDVGRSLNPAIDIGQVEGGFVQGMGWLTTE 659 (758)
T ss_pred EEEEcCCCccccccccCCCCcceeeeeEEEEEEEEecCCCcEEEEEEEEEEecCCcCCHHHhhhhhhhhhhhhhhHhhcc
Confidence 99998765555555555556557899999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCcccCCCCCCCCCCCCCCCCCeeEEEEeeC-CCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhhhhcCC
Q psy14045 152 ELMFSPSGVLYTRGPGTYKIPGFADIPAEFNVSLLKG-APNPRAVYSSKAVGEPPLLLASSVYFAIRDAIDAYRKQELGR 230 (287)
Q Consensus 152 ~~~~d~~G~~~~~~~~~Y~iP~~~d~P~~~~v~~ve~-~~~~~~p~GAkGvGE~~~~~~aAi~~AI~~Ai~~a~~~~~g~ 230 (287)
++.||++|+++|.+|.||++|++.|+|+.++++++|. ++++.+|||+||+||++++++++++|||.||+.+++
T Consensus 660 ~~~~d~~G~~l~~~~~dY~iPta~DiP~~~~~~~~e~~~~~~~~p~GaKGvGE~~~~~~aav~~AI~nAi~~a~------ 733 (758)
T TIGR02965 660 ELVWDEKGRLRTHAPSTYKIPAASDRPKDFNVRLFEWSENREDTIHRSKAVGEPPLMLGISVLFAISDAVASVA------ 733 (758)
T ss_pred ceEECCCcCCcCCCCcCcCCCChhhCCCccEEEEecCCCCCCCCCcCCcccCccchhhHHHHHHHHHHHHHHhh------
Confidence 9999988999999999999999999993399999983 335689999999999999985589999999998776
Q ss_pred CCccc---ccCCCCHHHHHHHhhcc
Q psy14045 231 EDYYR---LDSPATPAKIRLLCEDS 252 (287)
Q Consensus 231 ~g~r~---~~lP~tpe~i~~al~~~ 252 (287)
|+|+ +++|+|||+||++|++.
T Consensus 734 -g~~~~~~~~lP~tpe~v~~al~~~ 757 (758)
T TIGR02965 734 -DYRVCPRLDAPATPERVLMAVEAL 757 (758)
T ss_pred -ccCCCCCCCCCCCHHHHHHHHHhc
Confidence 6655 89999999999998763
No 3
>PLN02906 xanthine dehydrogenase
Probab=100.00 E-value=5.7e-51 Score=441.45 Aligned_cols=243 Identities=51% Similarity=0.891 Sum_probs=215.7
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHHHHHHHhccchhcCCCCCHHHHHHHhhcCCcceEEEEEeecCCcccccccCCCc
Q psy14045 11 IQPLYWFFNSERVGNEYWSICSQDACSKLNERLKPYKEKNPTGKWQDWVKAAFFDRTSLAATGYFKTPDIGYDMKKNEGA 90 (287)
Q Consensus 11 ~~~~~~~~t~~Sr~T~~~G~Av~~Aa~~Lk~rL~~~aa~~~~~~~~el~~~a~~~~~~l~~~~~y~~p~~~~d~~~~~g~ 90 (287)
..|+.+ +|+|||+|+++|+||++||++||+||+++++.+++++|.+++..++..+..+.+.++|..|...++..+..+.
T Consensus 1066 ~~p~~~-gT~aSr~t~~~G~Av~~Aa~~l~~rl~~~a~~~~~~~~~~l~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~~~ 1144 (1319)
T PLN02906 1066 KVPNAS-PTAASASSDMYGAAVLDACEQIKARMEPVASKLNFSSFAELVTACYFQRIDLSAHGFYITPDIGFDWKTGKGN 1144 (1319)
T ss_pred CCCCCC-CCccchhhHhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhccCCCeEEEEEecCCCcccccccccCC
Confidence 346555 9999999999999999999999999999988888899999998877656679999999876544444445556
Q ss_pred cccccceeeEEEEEEEeCCCCcEEEEEEEEEeecccccChhhhhhhhHhHHHhhHHHHhccceEEcCC-------CcccC
Q psy14045 91 IFNYFGYGASVSEVEIDCLTGDHQVRATEIVMDVGESLNPAIDVGQVEGAFMQGYGLYVMEELMFSPS-------GVLYT 163 (287)
Q Consensus 91 ~~~~~~~~A~~aEVeVD~~TG~v~V~r~~~~~D~G~~iNP~~~~gQI~Gg~~qGlG~AL~E~~~~d~~-------G~~~~ 163 (287)
++.+|+|++|++|||||++||+++|+|+++++|||++|||.+++|||+||++||||++|+|++.||++ |+++|
T Consensus 1145 ~~~~~~~ga~~~eVeVD~~TG~v~vlr~~~v~D~G~~iNP~~~~GQieGg~vqGiG~aL~Ee~~~d~~~~~~~~~G~llt 1224 (1319)
T PLN02906 1145 PFNYFTYGAAFAEVEIDTLTGDFHTRRVDIVMDLGYSINPAIDIGQIEGAFVQGLGWVALEELKWGDAAHKWIRPGSLFT 1224 (1319)
T ss_pred CccceeeeEEEEEEEEecCCCcEEEEEEEEEEecCccCCHHHHhHhhHHHHHHHHHHHhcCceEEcccccccCCCCcccc
Confidence 76789999999999999999999999999999999999999999999999999999999999999976 99999
Q ss_pred CCCCCCCCCCCCCCCCeeEEEEeeCCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccccCCCCHH
Q psy14045 164 RGPGTYKIPGFADIPAEFNVSLLKGAPNPRAVYSSKAVGEPPLLLASSVYFAIRDAIDAYRKQELGREDYYRLDSPATPA 243 (287)
Q Consensus 164 ~~~~~Y~iP~~~d~P~~~~v~~ve~~~~~~~p~GAkGvGE~~~~~~aAi~~AI~~Ai~~a~~~~~g~~g~r~~~lP~tpe 243 (287)
.+|++|++|++.|+|.+|++.++++++++.+|||+||+||+++++++++++||+||+.+++ ...|.+|++++++|+|||
T Consensus 1225 ~~~~~Y~iPt~~DiP~~~~v~~~~~~~~~~~p~gaKGvGE~~~~~~aav~~AI~~Ai~~A~-~~~g~~~~~~~~~P~Tpe 1303 (1319)
T PLN02906 1225 CGPGTYKIPSVNDIPFKFNVSLLKGAPNPKAIHSSKAVGEPPFFLAASVFFAIKDAIKAAR-AEVGLHGWFPLDTPATPE 1303 (1319)
T ss_pred CCCcccCCCCccccCCceEEEEEeCCCCCCCCCcCccCCccccccchHHHHHHHHHHHHHH-hhcCCCCcccCCCCCCHH
Confidence 9999999999999994499999954788999999999999999988888889999998877 555777889999999999
Q ss_pred HHHHHhhccccc
Q psy14045 244 KIRLLCEDSITK 255 (287)
Q Consensus 244 ~i~~al~~~~~~ 255 (287)
+|+.++......
T Consensus 1304 ri~~a~~~~~~~ 1315 (1319)
T PLN02906 1304 RIRMACGDEITA 1315 (1319)
T ss_pred HHHHHccchhhh
Confidence 999998765443
No 4
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit. This model represents the large subunits of group of carbon-monoxide dehydrogenases that include molybdenum as part of the enzymatic cofactor. There are various forms of carbon-monoxide dehydrogenase; Salicibacter pomeroyi DSS-3, for example, has two forms. Note that, at least in some species, the active site Cys is modified with a selenium attached to (rather than replacing) the sulfur atom. This is termed selanylcysteine, and created post-translationally, in contrast to selenocysteine incorporation during translation as for many other selenoproteins.
Probab=100.00 E-value=2.4e-49 Score=410.92 Aligned_cols=213 Identities=22% Similarity=0.300 Sum_probs=187.1
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHHHHHHHhccchhcCC----------------------CCCHHHHHHHhhcC---
Q psy14045 11 IQPLYWFFNSERVGNEYWSICSQDACSKLNERLKPYKEKNP----------------------TGKWQDWVKAAFFD--- 65 (287)
Q Consensus 11 ~~~~~~~~t~~Sr~T~~~G~Av~~Aa~~Lk~rL~~~aa~~~----------------------~~~~~el~~~a~~~--- 65 (287)
..|. +.+|+|||+|+++|+||++||++||+||+++|++.+ .++|.+++..++..
T Consensus 529 ~~p~-~~gt~~Sr~t~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l~~~~g~v~~~~~~~~~~~~~~l~~~~~~~~~~ 607 (770)
T TIGR02416 529 TAPY-GLGTYGSRSTPVAGAATALAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGDPSKFKTMADIAWAAYNSPPP 607 (770)
T ss_pred CCCC-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHEEEECCEEEECCCCCCcccHHHHHHHHhccCcc
Confidence 3455 559999999999999999999999999999876531 15788887665432
Q ss_pred --CcceEEEEEeecCCcccccccCCCccccccceeeEEEEEEEeCCCCcEEEEEEEEEeecccccChhhhhhhhHhHHHh
Q psy14045 66 --RTSLAATGYFKTPDIGYDMKKNEGAIFNYFGYGASVSEVEIDCLTGDHQVRATEIVMDVGESLNPAIDVGQVEGAFMQ 143 (287)
Q Consensus 66 --~~~l~~~~~y~~p~~~~d~~~~~g~~~~~~~~~A~~aEVeVD~~TG~v~V~r~~~~~D~G~~iNP~~~~gQI~Gg~~q 143 (287)
...|.+.++|..+. .+|+|++|++|||||++||+++|+|+++++|||++|||++++|||+||++|
T Consensus 608 ~~~~~l~~~~~~~~~~-------------~~~~~ga~~~eVeVD~~TG~v~v~~~~~~~D~G~~iNP~~~~GQi~Gg~~q 674 (770)
T TIGR02416 608 GLEPGLEAVNYYDPPN-------------MTYPFGAYFCVVDIDVDTGVAKVRRFYALDDCGTRINPMIIEGQIHGGLTE 674 (770)
T ss_pred CcCCceEEEEEeCCCC-------------CCCCceeEEEEEEEECCCCeEEEEEEEEEEECCCccCHHHHHHHHHhhHHH
Confidence 12367777774321 257899999999999999999999999999999999999999999999999
Q ss_pred hHHHHhccceEEcCCCcccCCCCCCCCCCCCCCCCCeeEEEEeeCCCCCCCCCCccccCCCCcchhH-HHHHHHHHHHHH
Q psy14045 144 GYGLYVMEELMFSPSGVLYTRGPGTYKIPGFADIPAEFNVSLLKGAPNPRAVYSSKAVGEPPLLLAS-SVYFAIRDAIDA 222 (287)
Q Consensus 144 GlG~AL~E~~~~d~~G~~~~~~~~~Y~iP~~~d~P~~~~v~~ve~~~~~~~p~GAkGvGE~~~~~~a-Ai~~AI~~Ai~~ 222 (287)
|||++|+|++.||++|+++|.+|+||++|++.|+|+ +++.+++ ++++.+|||+||+||+++++++ ||+|||+||+..
T Consensus 675 GiG~aL~E~~~~d~~G~~l~~~~~dY~iPta~DvP~-~~~~~~e-~~~~~~p~GaKGvGE~~~~~~~aAianAI~dA~~~ 752 (770)
T TIGR02416 675 GFAVAMGQEIRFDEQGNVLGASLMDYFLPTAVETPH-WETDHTV-TPSPHHPIGAKGVGESPHVGSVPCFSNAVVDAYAF 752 (770)
T ss_pred HHHHHHhCcceECCCCCCCCCChhhCcCCchhcCCC-eEEEEee-cCCCCCCCCccccCCcccccHHHHHHHHHHHHHhh
Confidence 999999999999989999999999999999999997 9999998 8889999999999999999999 999999999842
Q ss_pred hhhhhcCCCCcccccCCCCHHHHHH
Q psy14045 223 YRKQELGREDYYRLDSPATPAKIRL 247 (287)
Q Consensus 223 a~~~~~g~~g~r~~~lP~tpe~i~~ 247 (287)
+ |+|++++|+|||+||+
T Consensus 753 -~-------Gv~~~~lP~Tpe~v~~ 769 (770)
T TIGR02416 753 -L-------GVGHIDMPHTAWRVWK 769 (770)
T ss_pred -c-------CCCcccCCCCHHHHhh
Confidence 2 7899999999999985
No 5
>TIGR03194 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha subunit. This model represents the largest chain, alpha, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=100.00 E-value=4.3e-49 Score=407.81 Aligned_cols=224 Identities=24% Similarity=0.316 Sum_probs=189.9
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHHHHHHHhccchhcCC----------------------CCCHHHHHHHhhcCCcc
Q psy14045 11 IQPLYWFFNSERVGNEYWSICSQDACSKLNERLKPYKEKNP----------------------TGKWQDWVKAAFFDRTS 68 (287)
Q Consensus 11 ~~~~~~~~t~~Sr~T~~~G~Av~~Aa~~Lk~rL~~~aa~~~----------------------~~~~~el~~~a~~~~~~ 68 (287)
..|. .++|+|||+|+++|+||++||++||+||++++++.+ .++|.++...++.....
T Consensus 498 ~~p~-~~gt~~Sr~t~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (746)
T TIGR03194 498 LTPK-DNGSYSSRVTFMVGNAAIDAAEELKGVLVAAAAKKLDAREEDIECAGEMFFVSGSADPGLSFQEVVKAALVDSGT 576 (746)
T ss_pred CCCC-CCCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHEEEECCEEEECCCCCCceeHHHHHHHhcccCCC
Confidence 4554 459999999999999999999999999999987643 25677777544433346
Q ss_pred eEEEEEeecC-CcccccccCCCc-cccccceeeEEEEEEEeCCCCcEEEEEEEEEeecccccChhhhhhhhHhHHHhhHH
Q psy14045 69 LAATGYFKTP-DIGYDMKKNEGA-IFNYFGYGASVSEVEIDCLTGDHQVRATEIVMDVGESLNPAIDVGQVEGAFMQGYG 146 (287)
Q Consensus 69 l~~~~~y~~p-~~~~d~~~~~g~-~~~~~~~~A~~aEVeVD~~TG~v~V~r~~~~~D~G~~iNP~~~~gQI~Gg~~qGlG 146 (287)
+.+.+.|..+ +..++++...+. ...+++|+|+++|||||++||+++|+|+++++|||++|||++++|||+||++||||
T Consensus 577 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aeVeVD~~TG~v~v~~~~~~~D~G~viNP~~v~gQi~Gg~~~GiG 656 (746)
T TIGR03194 577 ITVKGTYTCPPEFQGGKKRGGAVGSTMGFSYAAQVVEVSVDEETGKVTVHKVWVAVDCGKAINPLAVEGQVQGAVWMGMG 656 (746)
T ss_pred ceEEEEecCCCccccccccccccCcccccceeEEEEEEEEECCCCCEEEEEEEEEEeCCCcCCHHHHHHHHHHHHHHHHH
Confidence 8888888633 222222111010 11367899999999999999999999999999999999999999999999999999
Q ss_pred HHhccceEEcCCCcccCCCCCCCCCCCCCCCCCeeEEEEeeCCCCCCCCCCccccCCCCcchhH-HHHHHHHHHHHHhhh
Q psy14045 147 LYVMEELMFSPSGVLYTRGPGTYKIPGFADIPAEFNVSLLKGAPNPRAVYSSKAVGEPPLLLAS-SVYFAIRDAIDAYRK 225 (287)
Q Consensus 147 ~AL~E~~~~d~~G~~~~~~~~~Y~iP~~~d~P~~~~v~~ve~~~~~~~p~GAkGvGE~~~~~~a-Ai~~AI~~Ai~~a~~ 225 (287)
++|+|++.|| +|+++|.||.||++|++.|+|+ ++++++| ++++.+|||+||+||+++++++ ||+|||+||+
T Consensus 657 ~aL~E~~~~d-~G~~~~~~l~~Y~ipt~~d~P~-i~v~~ve-~~~~~~p~Gakg~GE~~~~~~~~AIanAI~~A~----- 728 (746)
T TIGR03194 657 QALSEETVYD-NGRMKHASLLDYRVPTIVESPD-IEVIIVE-SMDPNGPFGAKEASEGALAGFLPAIHNAVYDAV----- 728 (746)
T ss_pred HHhcCceEec-CCeECCCChhhccCCChhccCC-eEEEEEe-CCCCCCCCCCCcCCCCcccchHHHHHHHHHHhh-----
Confidence 9999999998 5999999999999999999996 9999998 7888999999999999999988 9999999998
Q ss_pred hhcCCCCcccccCCCCHHHHHHHh
Q psy14045 226 QELGREDYYRLDSPATPAKIRLLC 249 (287)
Q Consensus 226 ~~~g~~g~r~~~lP~tpe~i~~al 249 (287)
|+|++++|+|||+|+++|
T Consensus 729 ------G~r~~~lP~tpe~v~~al 746 (746)
T TIGR03194 729 ------GVRATDLPLTPDRVTEAL 746 (746)
T ss_pred ------CCCcccCCCCHHHHHhhC
Confidence 588999999999999875
No 6
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=100.00 E-value=7.4e-49 Score=413.67 Aligned_cols=214 Identities=25% Similarity=0.328 Sum_probs=188.6
Q ss_pred CCCccccccccHHHHHHHHHHHHHHHHHHHHhccchhcCCC--------------------CCHHHHHHHhhcC--Ccce
Q psy14045 12 QPLYWFFNSERVGNEYWSICSQDACSKLNERLKPYKEKNPT--------------------GKWQDWVKAAFFD--RTSL 69 (287)
Q Consensus 12 ~~~~~~~t~~Sr~T~~~G~Av~~Aa~~Lk~rL~~~aa~~~~--------------------~~~~el~~~a~~~--~~~l 69 (287)
.|. +.+|+|||+|+++|+||++||++||+||++++++.++ ++|.++...++.. ...+
T Consensus 719 ~p~-~~gt~aSr~t~~~G~Av~~Aa~~l~~kl~~~aa~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l 797 (956)
T PRK09800 719 ALF-DKGAYASSGTCFSGNAARLAAENLREKILFHGAQMLGEPVADVQLATPGVVRGKKGEVSFGDIAHKGETGTGFGSL 797 (956)
T ss_pred CCC-CCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHEEEecCCEEeCCCCcccHHHHHHHHhcCCCCCCe
Confidence 454 5599999999999999999999999999988765422 4577776554332 2357
Q ss_pred EEEEEeecCCcccccccCCCccccccceeeEEEEEEEeCCCCcEEEEEEEEEeecccccChhhhhhhhHhHHHhhHHHHh
Q psy14045 70 AATGYFKTPDIGYDMKKNEGAIFNYFGYGASVSEVEIDCLTGDHQVRATEIVMDVGESLNPAIDVGQVEGAFMQGYGLYV 149 (287)
Q Consensus 70 ~~~~~y~~p~~~~d~~~~~g~~~~~~~~~A~~aEVeVD~~TG~v~V~r~~~~~D~G~~iNP~~~~gQI~Gg~~qGlG~AL 149 (287)
.+.++|..|. .+++|+|+++|||||++||+++|+|+++++|||++|||.+++|||+||++||||+||
T Consensus 798 ~~~~~~~~~~-------------~~~~~~a~~aeVeVD~~TG~vkvl~~~~~~D~G~vINP~~v~gQieGgi~qGiG~AL 864 (956)
T PRK09800 798 VGTGSYITPD-------------FAFPYGANFAEVAVNTRTGEIRLDKFYALLDCGTPVNPELALGQIYGATLRAIGHSM 864 (956)
T ss_pred EEEEEecCCC-------------CCcceEEEEEEEEEECCCCcEEEEEEEEEEECCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 7777775432 257899999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEcCCCcccCCCCCCCCCCCCCCCCCeeEEEEeeCCCCCCCCCCccccCCCCcchhH-HHHHHHHHHHHHhhhhhc
Q psy14045 150 MEELMFSPSGVLYTRGPGTYKIPGFADIPAEFNVSLLKGAPNPRAVYSSKAVGEPPLLLAS-SVYFAIRDAIDAYRKQEL 228 (287)
Q Consensus 150 ~E~~~~d~~G~~~~~~~~~Y~iP~~~d~P~~~~v~~ve~~~~~~~p~GAkGvGE~~~~~~a-Ai~~AI~~Ai~~a~~~~~ 228 (287)
+|++.||++|++++.+|.+|++|++.|+|+.++++++| ++++.+|||+||+||+++++++ ||+|||+||+
T Consensus 865 ~Ee~~~d~~G~~~~~~l~~Y~iPt~~DiP~~i~v~~ve-~~~~~~p~GaKgvGE~~~~~~a~AIanAI~~A~-------- 935 (956)
T PRK09800 865 SEEIIYDAEGHPLTRDLRSYGAPKIGDIPRDFRAVLVP-SDDKVGPFGAKSISEIGVNGAAPAIATAIHDAC-------- 935 (956)
T ss_pred hCCcEECCCCcCCCCCcccCCCCChhhCCCceEEEEEc-CCCCCCCCCCcccCCCcccchHHHHHHHHHHHh--------
Confidence 99999998899999999999999999999339999998 8899999999999999999999 9999999999
Q ss_pred CCCCcccccCCCCHHHHHHHhhc
Q psy14045 229 GREDYYRLDSPATPAKIRLLCED 251 (287)
Q Consensus 229 g~~g~r~~~lP~tpe~i~~al~~ 251 (287)
|+|++++|+|||+|+++|.+
T Consensus 936 ---G~r~~~lP~tpe~vl~al~~ 955 (956)
T PRK09800 936 ---GIWLREWHFTPEKILTALEK 955 (956)
T ss_pred ---CcCcccCCCCHHHHHHHHhh
Confidence 57899999999999999874
No 7
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=100.00 E-value=9.6e-49 Score=412.88 Aligned_cols=213 Identities=25% Similarity=0.321 Sum_probs=186.8
Q ss_pred CCCccccccccHHHHHHHHHHHHHHHHHHHHhccchhcCCC--------------------CCHHHHHHHhhcC--Ccce
Q psy14045 12 QPLYWFFNSERVGNEYWSICSQDACSKLNERLKPYKEKNPT--------------------GKWQDWVKAAFFD--RTSL 69 (287)
Q Consensus 12 ~~~~~~~t~~Sr~T~~~G~Av~~Aa~~Lk~rL~~~aa~~~~--------------------~~~~el~~~a~~~--~~~l 69 (287)
.|. ..+|+|||+|+++|+|+++||++||+||++++++.++ ++|.++...++.. ...+
T Consensus 715 ~p~-~~gt~aSr~t~~~G~Av~~Aa~~l~~kl~~~aa~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (951)
T TIGR03313 715 ALF-DKGAYASSGTCFSGNAAKRAAENLREKILFHGAEMLGEPVADVDLAAPGLVRGKTGEVSYFDIAHKAETGTGFGQL 793 (951)
T ss_pred CCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHEEEecCCEEeCCCCcccHHHHHHHHhccCCCCCe
Confidence 454 4599999999999999999999999999988765322 4577765444321 2246
Q ss_pred EEEEEeecCCcccccccCCCccccccceeeEEEEEEEeCCCCcEEEEEEEEEeecccccChhhhhhhhHhHHHhhHHHHh
Q psy14045 70 AATGYFKTPDIGYDMKKNEGAIFNYFGYGASVSEVEIDCLTGDHQVRATEIVMDVGESLNPAIDVGQVEGAFMQGYGLYV 149 (287)
Q Consensus 70 ~~~~~y~~p~~~~d~~~~~g~~~~~~~~~A~~aEVeVD~~TG~v~V~r~~~~~D~G~~iNP~~~~gQI~Gg~~qGlG~AL 149 (287)
.+.+.|..+. .+|+|+|+++|||||++||+++|+|+++++|||++|||.+++|||+||++||||+||
T Consensus 794 ~~~~~~~~~~-------------~~~~~~a~~aeVeVD~~TG~vkv~r~~~~~D~G~~INP~~v~gQieGg~~qGiG~AL 860 (951)
T TIGR03313 794 VGTGSYITSE-------------FAFPYGANFAEVAVNTRTGEIRLDKFYALLDCGTPVNPELALGQIYGATMRAIGHSM 860 (951)
T ss_pred EEEEEecCCC-------------CCccceeEEEEEEEECCCCcEEEEEEEEEEECCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 6777765431 257899999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEcCCCcccCCCCCCCCCCCCCCCC-CeeEEEEeeCCCCCCCCCCccccCCCCcchhH-HHHHHHHHHHHHhhhhh
Q psy14045 150 MEELMFSPSGVLYTRGPGTYKIPGFADIP-AEFNVSLLKGAPNPRAVYSSKAVGEPPLLLAS-SVYFAIRDAIDAYRKQE 227 (287)
Q Consensus 150 ~E~~~~d~~G~~~~~~~~~Y~iP~~~d~P-~~~~v~~ve~~~~~~~p~GAkGvGE~~~~~~a-Ai~~AI~~Ai~~a~~~~ 227 (287)
+|++.||++|++++.+|.+|++|++.|+| + +++++++ ++++.+|||+||+||+++++++ ||+|||+||+
T Consensus 861 ~Ee~~~d~~G~~~~~~l~~Y~iPt~~D~P~~-~~v~~ve-~~~~~~p~GaKGiGE~~~~~~apAIanAI~dA~------- 931 (951)
T TIGR03313 861 TEEIVYDDNGIPLTRDLKSYGAPKIGDIPRD-FRAVLVP-SDDKVGPYGAKSISEIGVNGAAPAIATAIHDAC------- 931 (951)
T ss_pred hCCcEECCCCcCCCCChhhCCCCChHhCCCc-eEEEEEc-CCCCCCCCCCcccCCCcccchHHHHHHHHHHHh-------
Confidence 99999998899999999999999999999 6 9999998 8899999999999999999998 9999999998
Q ss_pred cCCCCcccccCCCCHHHHHHHhhc
Q psy14045 228 LGREDYYRLDSPATPAKIRLLCED 251 (287)
Q Consensus 228 ~g~~g~r~~~lP~tpe~i~~al~~ 251 (287)
|+|++++|+|||+||++|.+
T Consensus 932 ----G~r~~~lP~tPe~vl~al~~ 951 (951)
T TIGR03313 932 ----GVWLRDWHFTPEKILKGLNK 951 (951)
T ss_pred ----CcccccCCCCHHHHHHHhhC
Confidence 58899999999999998853
No 8
>PRK09970 xanthine dehydrogenase subunit XdhA; Provisional
Probab=100.00 E-value=1.5e-48 Score=404.47 Aligned_cols=214 Identities=21% Similarity=0.319 Sum_probs=188.5
Q ss_pred CCCccccccccHHHHHHHHHHHHHHHHHHHHhccchhcCC----------------------CCCHHHHHHHhhcC---C
Q psy14045 12 QPLYWFFNSERVGNEYWSICSQDACSKLNERLKPYKEKNP----------------------TGKWQDWVKAAFFD---R 66 (287)
Q Consensus 12 ~~~~~~~t~~Sr~T~~~G~Av~~Aa~~Lk~rL~~~aa~~~----------------------~~~~~el~~~a~~~---~ 66 (287)
.| ++.+|+|||+|+++|.|+++||++||+||++++++.. .++|.+++..++.. .
T Consensus 516 ~p-~~~gt~aSr~t~~~g~Av~~Aa~~lr~~l~~~aa~~l~~~~~~l~~~~G~v~~~~~~~~~~~~~~la~~a~~~~~~~ 594 (759)
T PRK09970 516 TP-FDPGAYASRQSYVAGPAIRKAALELKEKILAHAAVMLHQSAMNLDIIDGHIVVKRPGEPLMSLEELAMDAYYHPERG 594 (759)
T ss_pred CC-CCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHEEEECCEEEECCCCCccccHHHHHHHhhccccCC
Confidence 44 4569999999999999999999999999998877532 25677777655432 2
Q ss_pred cceEEEEEeecCCcccccccCCCccccccceeeEEEEEEEeCCCCcEEEEEEEEEeecccccChhhhhhhhHhHHHhhHH
Q psy14045 67 TSLAATGYFKTPDIGYDMKKNEGAIFNYFGYGASVSEVEIDCLTGDHQVRATEIVMDVGESLNPAIDVGQVEGAFMQGYG 146 (287)
Q Consensus 67 ~~l~~~~~y~~p~~~~d~~~~~g~~~~~~~~~A~~aEVeVD~~TG~v~V~r~~~~~D~G~~iNP~~~~gQI~Gg~~qGlG 146 (287)
.++...+.|..+. .+|+|+|+++|||||++||+++|+|+++++|||++|||.+++|||+||++||||
T Consensus 595 ~~~~~~~~~~~~~-------------~~~~~~a~~aeVeVD~~TG~v~v~~~~~~~D~G~~iNP~~v~gQi~Gg~~qGiG 661 (759)
T PRK09970 595 GQITAESSIKTTT-------------NPPAFGCTFVDVEVDIALCKVTINRILNVHDSGHILNPLLAEGQVHGGMGMGIG 661 (759)
T ss_pred CceeEEEEecCCC-------------CCCceEEEEEEEEEeCCCCeEEEEEEEEEEEcCcccCHHHHHHHHHhHHHHHHH
Confidence 3466666665331 257899999999999999999999999999999999999999999999999999
Q ss_pred HHhccceEEcCC-CcccCCCCCCCCCCCCCCCCCeeEEEEeeCCCCCCCCCCccccCCCCcchhH-HHHHHHHHHHHHhh
Q psy14045 147 LYVMEELMFSPS-GVLYTRGPGTYKIPGFADIPAEFNVSLLKGAPNPRAVYSSKAVGEPPLLLAS-SVYFAIRDAIDAYR 224 (287)
Q Consensus 147 ~AL~E~~~~d~~-G~~~~~~~~~Y~iP~~~d~P~~~~v~~ve~~~~~~~p~GAkGvGE~~~~~~a-Ai~~AI~~Ai~~a~ 224 (287)
++|+|++.||++ |++++.||.||++|++.|+|+ +++++++ ++++.+|||+||+||+++++++ ||+|||+||+
T Consensus 662 ~aL~E~~~~d~~~G~~~~~~~~dY~ip~~~d~P~-i~v~~ve-~~~~~~p~GaKgvGE~~~~~~~~AIanAi~~A~---- 735 (759)
T PRK09970 662 WALFEEMIIDEKTGVVRNPNLLDYKLPTMMDLPQ-LESAFVE-IYEPQSAYGHKSLGEPPIISPAPAIRNAVLMAT---- 735 (759)
T ss_pred HHhcceeEEcCCCCeECCCChhhccCCCcccCCC-eEEEEEe-cCCCCCCCCCcccCCCcccchHHHHHHHHHHhh----
Confidence 999999999985 999999999999999999996 9999998 7889999999999999999988 9999999998
Q ss_pred hhhcCCCCcccccCCCCHHHHHHHhhcc
Q psy14045 225 KQELGREDYYRLDSPATPAKIRLLCEDS 252 (287)
Q Consensus 225 ~~~~g~~g~r~~~lP~tpe~i~~al~~~ 252 (287)
|+|++++|+|||+||++|...
T Consensus 736 -------G~r~~~lP~tpe~v~~al~~~ 756 (759)
T PRK09970 736 -------GVAINTLPMTPQRLFEEFKEA 756 (759)
T ss_pred -------CCCcCCCCCCHHHHHHHHHhc
Confidence 578999999999999998764
No 9
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=100.00 E-value=3e-47 Score=395.01 Aligned_cols=216 Identities=25% Similarity=0.320 Sum_probs=180.8
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHHHHHHHhccchhcCCCCC------------------------------HHHHHH
Q psy14045 11 IQPLYWFFNSERVGNEYWSICSQDACSKLNERLKPYKEKNPTGK------------------------------WQDWVK 60 (287)
Q Consensus 11 ~~~~~~~~t~~Sr~T~~~G~Av~~Aa~~Lk~rL~~~aa~~~~~~------------------------------~~el~~ 60 (287)
..|..+ +|+|||+|+++|+||++||++||+||++++++.++.+ |.++..
T Consensus 521 ~~p~~~-gt~~Sr~t~~~G~Av~~Aa~~l~~kl~~~aa~~l~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~ 599 (768)
T TIGR03196 521 KGPKAG-SSSASRGTSMSGGAIQGACAAFAAQLKARAAETAGLPAEVVEAPAENLIPGAAEIVGDKNEAALRVPLAEAAA 599 (768)
T ss_pred CCCCCC-CCchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhEEEeCCeeeecccceeeecCCCcceEEHHHHhc
Confidence 456655 9999999999999999999999999998877543322 222210
Q ss_pred HhhcCCcceEEEEEe-ecCCcccccccCCCccccccceeeEEEEEEEeCCCCcEEEEEEEEEeecccccChhhhhhhhHh
Q psy14045 61 AAFFDRTSLAATGYF-KTPDIGYDMKKNEGAIFNYFGYGASVSEVEIDCLTGDHQVRATEIVMDVGESLNPAIDVGQVEG 139 (287)
Q Consensus 61 ~a~~~~~~l~~~~~y-~~p~~~~d~~~~~g~~~~~~~~~A~~aEVeVD~~TG~v~V~r~~~~~D~G~~iNP~~~~gQI~G 139 (287)
...+.+.+.| ..|..+++.....+.++.+|+|+||++|||||++||+++|+|+++++|||++|||.+++|||+|
T Consensus 600 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~~eveVd~~tG~v~v~~~~~~~D~G~~iNp~~~~gQi~G 674 (768)
T TIGR03196 600 -----DGPIAAETAFHDFPTSALDADVGQGDGHFAFAAAAAAAEVDVDLDLGDVKLIDCAHAIAAGPVLNPLALRGQIEG 674 (768)
T ss_pred -----cccceeeeccccCCCcccccccccCCCcccccceEEEEEEEEECCCCcEEEEEEEEEEECCCccCHHHHHHHHHH
Confidence 0113333433 2333233443334445567899999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHhccceEEcCCCcccCCCCCCCCCCCCCCCCCeeEEEEeeCCCCCCCCCCccccCCCCcchhH-HHHHHHHH
Q psy14045 140 AFMQGYGLYVMEELMFSPSGVLYTRGPGTYKIPGFADIPAEFNVSLLKGAPNPRAVYSSKAVGEPPLLLAS-SVYFAIRD 218 (287)
Q Consensus 140 g~~qGlG~AL~E~~~~d~~G~~~~~~~~~Y~iP~~~d~P~~~~v~~ve~~~~~~~p~GAkGvGE~~~~~~a-Ai~~AI~~ 218 (287)
|++||||+||+|++.|| +|+++|.||.||++|++.|+|+ +++++++ ++++.+|||+||+||+++++++ ||+|||+|
T Consensus 675 g~~~Gig~al~E~~~~~-~G~~~~~~~~~Y~~p~~~d~P~-~~~~~~~-~~~~~~p~G~kG~GE~~~~~~~~AianAi~~ 751 (768)
T TIGR03196 675 GAAMALGLALMEEAKMT-DGRVAAENFDDYLIPGIADVPD-LDFIAIE-DLMKDAPYGPKGVGEAGTCAATPAIIAAIHD 751 (768)
T ss_pred HHHHHHHHHHhCCeEec-CCeECCCCcccccCCChhhCCC-eEEEEEe-CCCCCCCCCCccCcCccccchHHHHHHHHHH
Confidence 99999999999999997 8999999999999999999996 9999998 7889999999999999999998 99999999
Q ss_pred HHHHhhhhhcCCCCcccccCCCCHHHHH
Q psy14045 219 AIDAYRKQELGREDYYRLDSPATPAKIR 246 (287)
Q Consensus 219 Ai~~a~~~~~g~~g~r~~~lP~tpe~i~ 246 (287)
|+ |+|+++||+|||+|+
T Consensus 752 A~-----------G~r~~~lP~tpe~v~ 768 (768)
T TIGR03196 752 AV-----------GCDINKLPIRPEDLL 768 (768)
T ss_pred Hh-----------CcCcccCCCChhhCC
Confidence 99 578999999999984
No 10
>PLN00192 aldehyde oxidase
Probab=100.00 E-value=1.7e-46 Score=406.89 Aligned_cols=234 Identities=38% Similarity=0.645 Sum_probs=204.3
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHHHHHHHhccchhcC----CCCCHHHHHHHhhcCCcceEEEEEeecCCccccccc
Q psy14045 11 IQPLYWFFNSERVGNEYWSICSQDACSKLNERLKPYKEKN----PTGKWQDWVKAAFFDRTSLAATGYFKTPDIGYDMKK 86 (287)
Q Consensus 11 ~~~~~~~~t~~Sr~T~~~G~Av~~Aa~~Lk~rL~~~aa~~----~~~~~~el~~~a~~~~~~l~~~~~y~~p~~~~d~~~ 86 (287)
..|+.+ +|+|||+|+++|+||++||++|++||+++++.+ ..++|.+++..++..+.+|+++++|.++.
T Consensus 1092 ~~p~~~-~t~gSr~t~~~G~Av~~Ac~~l~~rl~~~a~~~~~~~~~~~~~~~~~~a~~~~~~L~a~~~~~~~~------- 1163 (1344)
T PLN00192 1092 SMIQGG-FTAGSTTSESSCEAVRLCCVILVERLKPIKERLQEQMGSVTWDMLISQAYMQSVNLSASSYYTPDP------- 1163 (1344)
T ss_pred CCCCCC-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCHHHHHHHhcCCCCCeEEEEEECCCC-------
Confidence 446544 999999999999999999999999999998776 56899999877765567899999995321
Q ss_pred CCCccccccceeeEEEEEEEeCCCCcEEEEEEEEEeecccccChhhhhhhhHhHHHhhHHHHhccceEEcCCCcccCCCC
Q psy14045 87 NEGAIFNYFGYGASVSEVEIDCLTGDHQVRATEIVMDVGESLNPAIDVGQVEGAFMQGYGLYVMEELMFSPSGVLYTRGP 166 (287)
Q Consensus 87 ~~g~~~~~~~~~A~~aEVeVD~~TG~v~V~r~~~~~D~G~~iNP~~~~gQI~Gg~~qGlG~AL~E~~~~d~~G~~~~~~~ 166 (287)
. ++.|++||++++|||||++||+++|+|+++++|||++|||.+++||||||++||||++|+|++.||++|+++|.+|
T Consensus 1164 --~-~~~y~~~ga~~~eVEVD~~TG~v~vlr~~~~~D~G~~INP~i~~GQIeGg~vqGiG~al~Ee~~yd~~G~llt~~~ 1240 (1344)
T PLN00192 1164 --S-SMEYLNYGAAVSEVEVDLLTGETTILRSDIIYDCGQSLNPAVDLGQIEGAFVQGIGFFMLEEYTTNSDGLVVTDGT 1240 (1344)
T ss_pred --C-CccccceeEEEEEEEEecCCCcEEEEEEEEEEecCcccCHHHHHHHHHHHHHHHHhHHhceeEEECCCCCCCCCCh
Confidence 0 1347889999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred CCCCCCCCCCCCCeeEEEEeeCCC-CCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhhhh---cC----CCCcccccC
Q psy14045 167 GTYKIPGFADIPAEFNVSLLKGAP-NPRAVYSSKAVGEPPLLLASSVYFAIRDAIDAYRKQE---LG----REDYYRLDS 238 (287)
Q Consensus 167 ~~Y~iP~~~d~P~~~~v~~ve~~~-~~~~p~GAkGvGE~~~~~~aAi~~AI~~Ai~~a~~~~---~g----~~g~r~~~l 238 (287)
+||++|++.|+|.+|++.+++ ++ ++.+|||+||+||++++++++++.||+||+..+| .+ .| .......+.
T Consensus 1241 ~dY~iPt~~DiP~~~~v~~~e-~~~~~~~p~gaKgvGE~~~~~~~~v~~Ai~~Ai~~Ar-~~~~~~g~~~~~~~~~~l~~ 1318 (1344)
T PLN00192 1241 WTYKIPTVDTIPKQFNVEILN-SGHHKKRVLSSKASGEPPLLLAASVHCATRAAIREAR-KQLLSWGGIDGSDSTFQLPV 1318 (1344)
T ss_pred hhcCCCcccccCCceEEEEEe-CCCCCCCCCccccCccCcccccHHHHHHHHHHHHHHH-hhhcccCCcccCCCceecCC
Confidence 999999999999449999998 56 4789999999999999987788899999998888 55 44 444567789
Q ss_pred CCCHHHHHHHhhcccccCC
Q psy14045 239 PATPAKIRLLCEDSITKEF 257 (287)
Q Consensus 239 P~tpe~i~~al~~~~~~~~ 257 (287)
|.|||+|..++.....+.+
T Consensus 1319 pat~e~i~~~~~~~~~~~~ 1337 (1344)
T PLN00192 1319 PATMPVVKELCGLDVVERY 1337 (1344)
T ss_pred CCChHHHHHhcCChHHHHh
Confidence 9999999999887655444
No 11
>COG1529 CoxL Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]
Probab=100.00 E-value=1.5e-44 Score=373.27 Aligned_cols=226 Identities=27% Similarity=0.322 Sum_probs=179.6
Q ss_pred CCCCCCccccccccHHHHHHHHHHHHHHHHHHHHhccchhcCCCCCHHHHHHH-----hhcC-C---cceEEEEEe-ecC
Q psy14045 9 KPIQPLYWFFNSERVGNEYWSICSQDACSKLNERLKPYKEKNPTGKWQDWVKA-----AFFD-R---TSLAATGYF-KTP 78 (287)
Q Consensus 9 ~~~~~~~~~~t~~Sr~T~~~G~Av~~Aa~~Lk~rL~~~aa~~~~~~~~el~~~-----a~~~-~---~~l~~~~~y-~~p 78 (287)
..-.|..|++|+|||+|.+.+.|+..||.+|++|+...++..++.+-.+++.. .-.. . .++.....- ..+
T Consensus 494 Dt~~~~~~~~s~GS~~~~~~~~A~~~a~~~l~~k~~~~aa~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~ 573 (731)
T COG1529 494 DTDVPVGGWGSVGSRGTAVAGSAVIDAAAKLAEKDPVAAARMLGADAEDVVLEDGAFKVGGGDRRSAVSLKEVAGKGLAP 573 (731)
T ss_pred CCCCCCCCCCCcCcccccchHHHHHHHHHHHHHHHHHHHHhhhCCChhHeeeccCeeeeccCCccceeeHHHhhhccccC
Confidence 34456666799999999999999999999999999988776553332222110 0000 0 000000000 001
Q ss_pred CcccccccCCCccccccceeeEEEEEEEeCCCCcEEEEEEEEEeecccccChhhhhhhhHhHHHhhHHHHhccceEEcCC
Q psy14045 79 DIGYDMKKNEGAIFNYFGYGASVSEVEIDCLTGDHQVRATEIVMDVGESLNPAIDVGQVEGAFMQGYGLYVMEELMFSPS 158 (287)
Q Consensus 79 ~~~~d~~~~~g~~~~~~~~~A~~aEVeVD~~TG~v~V~r~~~~~D~G~~iNP~~~~gQI~Gg~~qGlG~AL~E~~~~d~~ 158 (287)
..... .......+|+|+||++|||||++||++||+|+++++|||++|||++++|||+||++||||++|+|+.+||++
T Consensus 574 ~~~~~---~~~~~~~~~~~~A~~~EV~Vd~~tG~vrV~r~~~~~D~G~vvNP~~~~~Qv~GGi~~Gig~aL~E~~i~d~~ 650 (731)
T COG1529 574 GLAVA---ASFGSDNTYPYGAHIAEVEVDPETGEVRVLRVVAVDDCGRVVNPKLAEGQVEGGILMGIGMALYEEAIYDED 650 (731)
T ss_pred ccccc---ccccccccccceeEEEEEEEECCCCcEEEEEEEEEEecCCccCHHHHHHHHHhHHHHHHHHHhhccceECCC
Confidence 10000 000111267899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCCCCCCCCCCCeeEEEEeeCCCCCCCCCCccccCCCCcchhH-HHHHHHHHHHHHhhhhhcCCCCccccc
Q psy14045 159 GVLYTRGPGTYKIPGFADIPAEFNVSLLKGAPNPRAVYSSKAVGEPPLLLAS-SVYFAIRDAIDAYRKQELGREDYYRLD 237 (287)
Q Consensus 159 G~~~~~~~~~Y~iP~~~d~P~~~~v~~ve~~~~~~~p~GAkGvGE~~~~~~a-Ai~~AI~~Ai~~a~~~~~g~~g~r~~~ 237 (287)
|+++|.||.||.+|++.|+|+ +++++++ ++++.+|+|+||+||+++++++ ||+|||.||+ |+|+++
T Consensus 651 g~~~~~n~~dY~ip~~~d~P~-iev~~v~-~p~~~~p~g~kGvGE~g~~~~~pAvaNAV~~At-----------Gkri~~ 717 (731)
T COG1529 651 GQLLNSNLADYGIPRAADAPE-VEVEFVE-SPSPFGPLGAKGVGEGGIIGIAPAIANAVFDAT-----------GKRIRD 717 (731)
T ss_pred CCcCCCCcccccCCCcccCCc-eEEEEec-CCCCCCCCCCCCcCcCccCchhHHHHHHHHHHh-----------CCcccc
Confidence 999999999999999999997 9999999 5677889999999999999998 9999999988 578999
Q ss_pred CCCCHHHHHHHhh
Q psy14045 238 SPATPAKIRLLCE 250 (287)
Q Consensus 238 lP~tpe~i~~al~ 250 (287)
||+||++|+.++.
T Consensus 718 lP~tp~~i~~al~ 730 (731)
T COG1529 718 LPITPERILAALR 730 (731)
T ss_pred CCCCHHHHHHhhh
Confidence 9999999999875
No 12
>COG4631 XdhB Xanthine dehydrogenase, molybdopterin-binding subunit B [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.1e-45 Score=355.81 Aligned_cols=236 Identities=42% Similarity=0.651 Sum_probs=213.1
Q ss_pred CCCccccccccHHHHHHHHHHHHHHHHHHHHhccchhcCC-------------------CCCHHHHHHHhhcCCcceEEE
Q psy14045 12 QPLYWFFNSERVGNEYWSICSQDACSKLNERLKPYKEKNP-------------------TGKWQDWVKAAFFDRTSLAAT 72 (287)
Q Consensus 12 ~~~~~~~t~~Sr~T~~~G~Av~~Aa~~Lk~rL~~~aa~~~-------------------~~~~~el~~~a~~~~~~l~~~ 72 (287)
-||+- .|.+|+|+.++|+|+++||+++|+||.++|++.. .+.|.++++.+|..+++|++.
T Consensus 519 VpNTS-aTAASSGsDLNGmAa~dAa~qIk~RLv~fAA~~~~V~~~~v~F~~n~vrig~~~~~F~~lv~~AY~arvqLsaa 597 (781)
T COG4631 519 VPNTS-ATAASSGSDLNGMAAQDAARQIKERLVAFAAEHWGVPEEDVAFLPNRVRIGGQELAFADLVKQAYFARVQLSAA 597 (781)
T ss_pred CCCCc-cccccccCCcccHHHHHHHHHHHHHHHHHHHHhcCCCHHHeEecCCeeEEcceecCHHHHHHHHhheeeeeecc
Confidence 46666 7999999999999999999999999999988621 378999999999999999999
Q ss_pred EEeecCCcccccccCCCccccccceeeEEEEEEEeCCCCcEEEEEEEEEeecccccChhhhhhhhHhHHHhhHHHHhccc
Q psy14045 73 GYFKTPDIGYDMKKNEGAIFNYFGYGASVSEVEIDCLTGDHQVRATEIVMDVGESLNPAIDVGQVEGAFMQGYGLYVMEE 152 (287)
Q Consensus 73 ~~y~~p~~~~d~~~~~g~~~~~~~~~A~~aEVeVD~~TG~v~V~r~~~~~D~G~~iNP~~~~gQI~Gg~~qGlG~AL~E~ 152 (287)
++|++|+++||.+.+.|.||.||+|||.+.||.||++||+.+|+|.++.||+|++|||.++.|||||||+||+||.++||
T Consensus 598 GFY~TPkihwdra~~~G~PFyYFaYGAacSEV~vDtlTGey~~~R~DiLHDvG~SLNpaiDlGQiEGgFvQGmGWLTtEe 677 (781)
T COG4631 598 GFYKTPKIHWDRAAGRGRPFYYFAYGAACSEVSVDTLTGEYKVERTDILHDVGRSLNPAIDLGQIEGGFVQGMGWLTTEE 677 (781)
T ss_pred ccccCCccccchhhcCCCceEEEeecceeeeEEEecccceEEEEeehhhhhhhhhcccccccccccchhcccccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcCCCcccCCCCCCCCCCCCCCCCCeeEEEEeeCC-CCCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhhhhcCCC
Q psy14045 153 LMFSPSGVLYTRGPGTYKIPGFADIPAEFNVSLLKGA-PNPRAVYSSKAVGEPPLLLASSVYFAIRDAIDAYRKQELGRE 231 (287)
Q Consensus 153 ~~~d~~G~~~~~~~~~Y~iP~~~d~P~~~~v~~ve~~-~~~~~p~GAkGvGE~~~~~~aAi~~AI~~Ai~~a~~~~~g~~ 231 (287)
+.||++|++.+...++|+||...|+|++++|.+.+.+ ......+++|.+||+|++.+-++..||++|+.... +.+
T Consensus 678 L~wd~kGRlrThapSTYKiP~~sdrP~~f~V~L~~~~~n~e~ti~rSKAVGEPPlmL~iSV~~Al~~AvAsva--D~r-- 753 (781)
T COG4631 678 LWWDEKGRLRTHAPSTYKIPLASDRPKIFNVRLAEWSENAEPTIHRSKAVGEPPLMLGISVLEALSDAVASVA--DYR-- 753 (781)
T ss_pred heeccCCCeeecCCccccCcccccCchheeeehhccccccccccccccccCCCCcchhHHHHHHHHHHHHHhc--ccC--
Confidence 9999999999999999999999999999999998742 23347899999999999977699999999997542 111
Q ss_pred CcccccCCCCHHHHHHHhhcc
Q psy14045 232 DYYRLDSPATPAKIRLLCEDS 252 (287)
Q Consensus 232 g~r~~~lP~tpe~i~~al~~~ 252 (287)
-....+.|.|||+++.++...
T Consensus 754 ~~p~ldaPATpErVlmave~l 774 (781)
T COG4631 754 VCPRLDAPATPERVLMAVERL 774 (781)
T ss_pred cCCCCCCCCCHHHHHHHHHHH
Confidence 123567899999999998763
No 13
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=100.00 E-value=2.1e-41 Score=354.38 Aligned_cols=200 Identities=21% Similarity=0.278 Sum_probs=157.6
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHHHHHHHhccchhcCCCCCHHHHHHHhhcCCcceEEEEEeecCCcccccccCCCc
Q psy14045 11 IQPLYWFFNSERVGNEYWSICSQDACSKLNERLKPYKEKNPTGKWQDWVKAAFFDRTSLAATGYFKTPDIGYDMKKNEGA 90 (287)
Q Consensus 11 ~~~~~~~~t~~Sr~T~~~G~Av~~Aa~~Lk~rL~~~aa~~~~~~~~el~~~a~~~~~~l~~~~~y~~p~~~~d~~~~~g~ 90 (287)
..|.-+ +|+|||+|+++|+||++||++||+||++. .+.++.... +. ..|......+........
T Consensus 647 ~~p~~~-gt~aSR~t~~~G~Av~~Aa~~l~~~l~~~-------~~~~l~~~~------~~--~~~~~~~~~~~~~~~~~~ 710 (848)
T TIGR03311 647 LTPDSG-TTTASRQSLFTGEATRRAAAKLKEALRGR-------TLAELEGEE------FY--GEYHSITDPLNSDKENPV 710 (848)
T ss_pred CCCCCC-CCchhhHHHHHHHHHHHHHHHHHHHHHhc-------CHHHcCCCE------Ee--eccccccCcceeeccCCC
Confidence 456544 99999999999999999999999999743 233331100 00 001100000000000111
Q ss_pred cccccceeeEEEEEEEeCCCCcEEEEEEEEEeecccccChhhhhhhhHhHHHhhHHHHhccceEEcCCCcccCCCCCCCC
Q psy14045 91 IFNYFGYGASVSEVEIDCLTGDHQVRATEIVMDVGESLNPAIDVGQVEGAFMQGYGLYVMEELMFSPSGVLYTRGPGTYK 170 (287)
Q Consensus 91 ~~~~~~~~A~~aEVeVD~~TG~v~V~r~~~~~D~G~~iNP~~~~gQI~Gg~~qGlG~AL~E~~~~d~~G~~~~~~~~~Y~ 170 (287)
++..|+|+++++|| | +|| +|+|+++++|||++|||.+++|||+||++||||+||+|++.|| +|++++ +|.||+
T Consensus 711 ~~~~~~~~~~~~eV--d-~tG--~v~r~~~v~D~G~vINP~~veGQieGG~~qGlG~AL~Ee~~~d-~G~~~~-~~~dY~ 783 (848)
T TIGR03311 711 SHVGYGYATQVVIL--D-DAG--KVEKVVAAYDVGRAINPLNLEGQIEGGIVMGLGYALTEDFPLR-EGIPTA-KFGTLG 783 (848)
T ss_pred CccccceEEEEEEE--C-CCC--eEEEEEEEEeCCccCCHHHHHHHHHHHHHHHHHHHhcCcEEec-CCeecC-Chhhcc
Confidence 23345666666665 6 899 5779999999999999999999999999999999999999998 699886 599999
Q ss_pred CCCCCCCCCeeEEEEeeCCCCCCCCCCccccCCCCcchhH-HHHHHHHHHHHHhhhhhcCCCCcccccCCCCHHHHH
Q psy14045 171 IPGFADIPAEFNVSLLKGAPNPRAVYSSKAVGEPPLLLAS-SVYFAIRDAIDAYRKQELGREDYYRLDSPATPAKIR 246 (287)
Q Consensus 171 iP~~~d~P~~~~v~~ve~~~~~~~p~GAkGvGE~~~~~~a-Ai~~AI~~Ai~~a~~~~~g~~g~r~~~lP~tpe~i~ 246 (287)
+|++.|+|+ ++++++| ++++.+|||+||+||+++++++ ||+|||+||+ |+|+++||++||++|
T Consensus 784 iPt~~D~P~-i~v~~ve-~~~~~~p~GaKGvGE~~~~~~~~AIanAV~~A~-----------G~r~~~lP~~p~~v~ 847 (848)
T TIGR03311 784 LFRSTQVPE-IETHLIE-KNGTPLAYGAKGVGELATIPTAPAVAGAYYRFD-----------GKFRLSLPLENTPYT 847 (848)
T ss_pred CCChhhCCC-eEEEEEe-CCCCCCCCCCccCCCCcccchHHHHHHHHHHhH-----------CcCcccCCCCccccc
Confidence 999999997 9999998 8899999999999999999998 9999999999 689999999999986
No 14
>KOG0430|consensus
Probab=100.00 E-value=4.9e-41 Score=348.55 Aligned_cols=223 Identities=50% Similarity=0.881 Sum_probs=206.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHhccchhcCCCCCHHHHHHHhhcCCcceEEEEEeecCCcccccccCCCccccccce
Q psy14045 18 FNSERVGNEYWSICSQDACSKLNERLKPYKEKNPTGKWQDWVKAAFFDRTSLAATGYFKTPDIGYDMKKNEGAIFNYFGY 97 (287)
Q Consensus 18 ~t~~Sr~T~~~G~Av~~Aa~~Lk~rL~~~aa~~~~~~~~el~~~a~~~~~~l~~~~~y~~p~~~~d~~~~~g~~~~~~~~ 97 (287)
.|+||.++.+.|.||+.||+.|.+||.++..+.+..+|.+++..+|.+.++|+++..|+. .|+++.|+.|
T Consensus 1032 ~Ta~S~~Sd~~g~AV~~~C~~l~~RL~Pv~~k~~~~tw~~~i~~AY~q~V~LsAs~~~~~----------~g~~~~Y~~y 1101 (1257)
T KOG0430|consen 1032 PTAASVSSDMYGAAVLDACETINARLEPVKSKHNFNTWEELIQAAYGQSINLSASDWYKP----------EGDMFPYLTY 1101 (1257)
T ss_pred ccccccccccccHHHHHHHHHHHHhhhhhhhhcCCccHHHHHHHHhhCccceeeeccccC----------CCCcccceec
Confidence 589999999999999999999999999999999889999999999999999999977642 3678899999
Q ss_pred eeEEEEEEEeCCCCcEEEEEEEEEeecccccChhhhhhhhHhHHHhhHHHHhccceEEcCCCcccCCCCCCCCCCCCCCC
Q psy14045 98 GASVSEVEIDCLTGDHQVRATEIVMDVGESLNPAIDVGQVEGAFMQGYGLYVMEELMFSPSGVLYTRGPGTYKIPGFADI 177 (287)
Q Consensus 98 ~A~~aEVeVD~~TG~v~V~r~~~~~D~G~~iNP~~~~gQI~Gg~~qGlG~AL~E~~~~d~~G~~~~~~~~~Y~iP~~~d~ 177 (287)
|++++|||||++||..+|+|.+++.|||.+|||.++.|||||+|+||+|+.++|++.||++|.+++.+.++|+||++.||
T Consensus 1102 G~a~sEVEID~LTG~~~ilRtDIv~D~G~SLNPaIDIGQIEGAFvQGlG~~t~Eel~~~~~G~l~t~gt~~YKiP~~~dI 1181 (1257)
T KOG0430|consen 1102 GAAASEVEIDTLTGDTEVLRVDILYDCGESLNPAIDIGQIEGAFVQGLGLVTLEELIYDPEGSLLTNGTWTYKIPGAKDI 1181 (1257)
T ss_pred cceeEEEEEEEecCcceEEEEEEeeecccccCcccccchhhhHHHhchhhhhhhhheeCCCceEeecCCCcccCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred CCeeEEEEeeCCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccccCCCCHHHHHHHhhcccccC
Q psy14045 178 PAEFNVSLLKGAPNPRAVYSSKAVGEPPLLLASSVYFAIRDAIDAYRKQELGREDYYRLDSPATPAKIRLLCEDSITKE 256 (287)
Q Consensus 178 P~~~~v~~ve~~~~~~~p~GAkGvGE~~~~~~aAi~~AI~~Ai~~a~~~~~g~~g~r~~~lP~tpe~i~~al~~~~~~~ 256 (287)
|.+|+|.++...+++.+.|.+|++||+|+..++++..||++|+..+|+ .+.....|+|||+|..++...-.++
T Consensus 1182 P~~FrV~LL~~~pn~~~v~sSKA~GEPPl~La~sv~fAi~~Ai~aAR~------~~f~L~~PaTpe~i~~~c~~~~~~~ 1254 (1257)
T KOG0430|consen 1182 PKDFRVELLNKNPNKAGVMSSKATGEPPLFLAASVFFAIRQAIKSARK------DWFRLEAPATPERIRLACGDEFSEF 1254 (1257)
T ss_pred chheEeeeccCCCCccceeeccccCCChHHHHHHHHHHHHHHHHHHhh------ccccCCCCCCHHHHHHhhcchhhhh
Confidence 999999999547888899999999999999988777799999988873 1567889999999999987654443
No 15
>PF02738 Ald_Xan_dh_C2: Molybdopterin-binding domain of aldehyde dehydrogenase; InterPro: IPR008274 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3NVZ_C 3NVY_C 1FO4_B 3NRZ_L 3AM9_A 3B9J_C 3AX7_B 3NVW_L 3BDJ_A 3ETR_N ....
Probab=100.00 E-value=5.5e-35 Score=293.15 Aligned_cols=167 Identities=28% Similarity=0.373 Sum_probs=128.1
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHHHHHHHhccchhcCCC-----CCHHHH--HHHhhcCCcceEEEEEeecCCcccc
Q psy14045 11 IQPLYWFFNSERVGNEYWSICSQDACSKLNERLKPYKEKNPT-----GKWQDW--VKAAFFDRTSLAATGYFKTPDIGYD 83 (287)
Q Consensus 11 ~~~~~~~~t~~Sr~T~~~G~Av~~Aa~~Lk~rL~~~aa~~~~-----~~~~el--~~~a~~~~~~l~~~~~y~~p~~~~d 83 (287)
..|..+ +|+|||+|++.|.|+++||++||+||++.|+..++ ++|++. ........+.+.+...+..+....+
T Consensus 373 ~~p~~~-~t~gSr~t~~~g~Av~~Aa~~lr~~l~~~Aa~~~~~~~~~l~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~ 451 (547)
T PF02738_consen 373 TTPYDG-GTGGSRSTYMSGNAVRKAAEDLREKLLEIAAEILGVDPEDLELEDGRVISPAKGVSISEAAIAAYANPPTGFD 451 (547)
T ss_dssp TS-SB---S-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSGGGEECHCHETHHHHHHEEHHHEEEHHHCTTSTTCE
T ss_pred CCCCCC-CCccchhhHhhHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhhccccccccccccccccccccccccccc
Confidence 456555 99999999999999999999999999999998764 344444 2222223344455555544432233
Q ss_pred ccc-CCCccccccceeeEEEEEEEeCCCCcEEEEEEEEEeecccccChhhhhhhhHhHHHhhHHHHhccceEEcCCCccc
Q psy14045 84 MKK-NEGAIFNYFGYGASVSEVEIDCLTGDHQVRATEIVMDVGESLNPAIDVGQVEGAFMQGYGLYVMEELMFSPSGVLY 162 (287)
Q Consensus 84 ~~~-~~g~~~~~~~~~A~~aEVeVD~~TG~v~V~r~~~~~D~G~~iNP~~~~gQI~Gg~~qGlG~AL~E~~~~d~~G~~~ 162 (287)
... ..+..+.+++|+++++|||||++||+++|+|+++++|||++|||+.++|||+||++||||+||+|++.||++|+++
T Consensus 452 ~~~~~~~~~~~~~~~~a~~~eVeVD~~TG~v~v~~~~~~~D~G~~iNP~~v~gQi~Gg~~~Glg~al~E~~~~d~~G~~~ 531 (547)
T PF02738_consen 452 PGTGGYGPPASYYSFGAHFAEVEVDTETGEVRVLRVVAAHDCGRVINPDIVEGQIEGGIVQGLGYALYEELVYDENGRPL 531 (547)
T ss_dssp TTTTEESBSSSEEEEEEEEEEEEEETTTSEEEEEEEEEEEEEBS-SBHHHHHHHHHHHHHHHHHHHHT--BEBTTTSEBS
T ss_pred cccccccCCccceeeeeeecccccccccccccceeeeeeccCCcccCHHHHhhhccccHHHHHHHHhcCCeEECCCCcCC
Confidence 322 2456778899999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred CCCCCCCCCCCCCCCC
Q psy14045 163 TRGPGTYKIPGFADIP 178 (287)
Q Consensus 163 ~~~~~~Y~iP~~~d~P 178 (287)
|.||.||++|++.|+|
T Consensus 532 ~~~~~dY~ip~~~d~P 547 (547)
T PF02738_consen 532 NPNFADYKIPTAADVP 547 (547)
T ss_dssp TSSTTTST---GGGS-
T ss_pred CCChhhCcCCCccccC
Confidence 9999999999999998
No 16
>PF08529 NusA_N: NusA N-terminal domain; InterPro: IPR013735 This entry represents the N-terminal RNA polymerase-binding domain of bacterial transcription factors such as NusA (N-utilising substance A). NusA is involved in transcriptional pausing, termination and anti-termination. NusA from Thermotoga maritima contains an N-terminal domain and three RNA-binding domains (one S1 domain and two KH domains). The N-terminal domain consists of a bifurcated coiled beta-sheet within an alpha/beta(3)/alpha/beta/alpha fold, which can be divided into two subdomains: a globular head and a helical body. The globular head subdomain may interact with RNA polymerase, while the helical body displays a similar structure to that of the helical domain in sigma70 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0031554 regulation of transcription termination, DNA-dependent; PDB: 1K0R_B 1HH2_P 1L2F_A 2KWP_A.
Probab=47.48 E-value=28 Score=28.45 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcEEEEEEEEEeec
Q psy14045 102 SEVEIDCLTGDHQVRATEIVMDV 124 (287)
Q Consensus 102 aEVeVD~~TG~v~V~r~~~~~D~ 124 (287)
++|++|..||+++|-+...++|=
T Consensus 42 ~~v~id~~~g~i~v~~~~~VV~d 64 (122)
T PF08529_consen 42 IRVEIDEDTGEIKVYRKKEVVED 64 (122)
T ss_dssp EEEEEETTTTEEEEEEEEEEETT
T ss_pred EEEEEECCCCeEEEEEEeeecCC
Confidence 48999999999999998888765
No 17
>PF04143 Sulf_transp: Sulphur transport; InterPro: IPR007272 This entry includes YeeE and YedE from Escherichia coli. These proteins are integral membrane proteins of unknown function. Many of these proteins contain two homologous regions that are represented by this entry. This region contains several conserved glycines and an invariant cysteine that is probably an important functional residue.
Probab=23.00 E-value=62 Score=21.49 Aligned_cols=18 Identities=22% Similarity=0.553 Sum_probs=14.8
Q ss_pred hhhHhHHHhhHHHHhccc
Q psy14045 135 GQVEGAFMQGYGLYVMEE 152 (287)
Q Consensus 135 gQI~Gg~~qGlG~AL~E~ 152 (287)
..+-||+++|+|+.|.--
T Consensus 3 ~~~iGg~lfG~G~~lagg 20 (43)
T PF04143_consen 3 AAIIGGFLFGFGARLAGG 20 (43)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 467899999999988643
No 18
>PRK12329 nusA transcription elongation factor NusA; Provisional
Probab=20.57 E-value=1.3e+02 Score=30.46 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.3
Q ss_pred EEEEEEeCCCCcEEEEEEEEEee
Q psy14045 101 VSEVEIDCLTGDHQVRATEIVMD 123 (287)
Q Consensus 101 ~aEVeVD~~TG~v~V~r~~~~~D 123 (287)
=++|++|++||.++|.+...++|
T Consensus 60 n~~V~ID~~tG~i~v~~~~~VVe 82 (449)
T PRK12329 60 NFDVELDLEEEGFRVLATKIIVE 82 (449)
T ss_pred CeEEEEECCCCcEEEEEEEEEec
Confidence 45899999999999999988886
Done!