RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14045
(287 letters)
>d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal domain
{Cow (Bos taurus) [TaxId: 9913]}
Length = 638
Score = 237 bits (605), Expect = 2e-74
Identities = 139/242 (57%), Positives = 177/242 (73%), Gaps = 2/242 (0%)
Query: 33 QDACSKLNERLKPYKEKNPTGKWQDWVKAAFFDRTSLAATGYFKTPDIGYDMKKNEGAIF 92
+AC + +RL+P+K+KNP G W+DWV AA+ DR SL+ TG+++TP++GY + N G F
Sbjct: 397 YEACQTILKRLEPFKKKNPDGSWEDWVMAAYQDRVSLSTTGFYRTPNLGYSFETNSGNAF 456
Query: 93 NYFGYGASVSEVEIDCLTGDHQVRATEIVMDVGESLNPAIDVGQVEGAFMQGYGLYVMEE 152
+YF YG + SEVEIDCLTGDH+ T+IVMDVG SLNPAID+GQVEGAF+QG GL+ +EE
Sbjct: 457 HYFTYGVACSEVEIDCLTGDHKNLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFTLEE 516
Query: 153 LMFSPSGVLYTRGPGTYKIPGFADIPAEFNVSLLKGAPNPRAVYSSKAVGEPPLLLASSV 212
L +SP G L+TRGP TYKIP F IP EF VSLL+ PN +A+Y+SKAVGEPPL L +SV
Sbjct: 517 LHYSPEGSLHTRGPSTYKIPAFGSIPTEFRVSLLRDCPNKKAIYASKAVGEPPLFLGASV 576
Query: 213 YFAIRDAIDAYRKQELGRE--DYYRLDSPATPAKIRLLCEDSITKEFPAPEPGSYKPWNI 270
+FAI+DAI A R Q + +RLDSPATP KIR C D T PG+ KPW++
Sbjct: 577 FFAIKDAIRAARAQHTNNNTKELFRLDSPATPEKIRNACVDKFTTLCVTGAPGNCKPWSL 636
Query: 271 SI 272
+
Sbjct: 637 RV 638
>d1jrob2 d.133.1.1 (B:124-777) Xanthine dehydrogenase chain B,
C-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}
Length = 654
Score = 195 bits (496), Expect = 2e-58
Identities = 83/202 (41%), Positives = 120/202 (59%), Gaps = 6/202 (2%)
Query: 50 NPTGKWQDWVKAAFFDRTSLAATGYFKTPDIGYDMKKNEGAIFNYFGYGASVSEVEIDCL 109
+ ++ + V AA+ R SL+ATG++ TP + +D + +G F YF YGA+++EV ID L
Sbjct: 454 GKSWRFAEIVAAAYMARISLSATGFYATPKLSWDRLRGQGRPFLYFAYGAAITEVVIDRL 513
Query: 110 TGDHQVRATEIVMDVGESLNPAIDVGQVEGAFMQGYGLYVMEELMFSPSGVLYTRGPGTY 169
TG++++ T+I+ D G SLNPA+D+GQ+EGA++QG G EEL++ G L T P TY
Sbjct: 514 TGENRILRTDILHDAGASLNPALDIGQIEGAYVQGAGWLTTEELVWDHCGRLMTHAPSTY 573
Query: 170 KIPGFADIPAEFNVSLLKGAPNPRAVYSSKAVGEPPLLLASSVYFAIRDAIDAYRKQELG 229
KIP F+D P FNV+L ++ SKAVGEPP LL S + A+ DA A
Sbjct: 574 KIPAFSDRPRIFNVALWDQPNREETIFRSKAVGEPPFLLGISAFLALHDACAACGP---- 629
Query: 230 REDYYRLDSPATPAKIRLLCED 251
+ L +PATP +
Sbjct: 630 --HWPDLQAPATPEAVLAAVRR 649
>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase
molybdoprotein {Oligotropha carboxidovorans, formerly
Pseudomonas carboxydovorans [TaxId: 40137]}
Length = 663
Score = 155 bits (393), Expect = 8e-44
Identities = 41/239 (17%), Positives = 76/239 (31%), Gaps = 25/239 (10%)
Query: 28 WSICSQDACSKLNERLKPYKEKNPTGKWQDWVKAA-----------FFDRTSLAATGYFK 76
+ A K+ + + D F LA Y
Sbjct: 430 AGAATAVAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGLPEKFKTMKELAWASYNS 489
Query: 77 TP---DIGYDMKKNEGAIFNYFGYGASVSEVEIDCLTGDHQVRATEIVMDVGESLNPAID 133
P + G + + +GA ++ID TG + R + D G +NP I
Sbjct: 490 PPPNLEPGLEAVNYYDPPNMTYPFGAYFCIMDIDVDTGVAKTRRFYALDDCGTRINPMII 549
Query: 134 VGQVEGAFMQGYGLYVMEELMFSPSGVLYTRGPGTYKIPGFADIPAEFNVSLLKGAPNPR 193
GQV G + + + + +E+ + G + + +P + P ++ P+P
Sbjct: 550 EGQVHGGLTEAFAVAMGQEIRYDEQGNVLGASFMDFFLPTAVETP-KWETDYTV-TPSPH 607
Query: 194 AVYSSKAVGEPPLLLASSVYF-AIRDAIDAYRKQELGREDYYRLDSPATPAKIRLLCED 251
+K VGE P + + A+ DA + P ++ + E
Sbjct: 608 HPIGAKGVGESPHVGGVPCFSNAVNDAYAFLNAG--------HIQMPHDAWRLWKVGEQ 658
>d1ffvb2 d.133.1.1 (B:147-803) Carbon monoxide (CO) dehydrogenase
molybdoprotein {Hydrogenophaga pseudoflava [TaxId:
47421]}
Length = 657
Score = 154 bits (390), Expect = 2e-43
Identities = 44/243 (18%), Positives = 80/243 (32%), Gaps = 25/243 (10%)
Query: 24 GNEYWSICSQDACSKLNERLKPYKEKNPTGKWQDWVKAAFFDRTS-----------LAAT 72
A K++ + + D + +A
Sbjct: 420 STPVAGAAIALAARKIHAKARKIAAHMLEVNENDLDWEVDRFKVKGDDSKFKTMADIAWQ 479
Query: 73 GYFKTPD---IGYDMKKNEGAIFNYFGYGASVSEVEIDCLTGDHQVRATEIVMDVGESLN 129
Y + P G + + +G + V+ID TG+ +VR + D G +N
Sbjct: 480 AYHQPPAGLEPGLEAVHYYDPPNFTYPFGIYLCVVDIDRATGETKVRRFYALDDCGTRIN 539
Query: 130 PAIDVGQVEGAFMQGYGLYVMEELMFSPSGVLYTRGPGTYKIPGFADIPAEFNVSLLKGA 189
P I GQ+ G +GY + + +++ F G L Y +P + P +
Sbjct: 540 PMIIEGQIHGGLTEGYAVAMGQQMPFDAQGNLLGNTLMDYFLPTAVETPHWETDHTVT-- 597
Query: 190 PNPRAVYSSKAVGEPPLLLASSVYF-AIRDAIDAYRKQELGREDYYRLDSPATPAKIRLL 248
P+P +K V E P + + + A+ DA LD P T ++
Sbjct: 598 PSPHHPIGAKGVAESPHVGSIPTFTAAVVDAFAHVGV--------THLDMPHTSYRVWKS 649
Query: 249 CED 251
++
Sbjct: 650 LKE 652
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large
subunit QorL {Pseudomonas putida [TaxId: 303]}
Length = 621
Score = 147 bits (370), Expect = 8e-41
Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 16/198 (8%)
Query: 55 WQDWVKAAFFDRTSLAATGYFKTPDIGYDMKKNEGAIFNYFGYGASVSEVEIDCLTGDHQ 114
+ + V AA+F + + D + G + VEID T +
Sbjct: 437 FAEVVGAAYFADAT-----HPPGFDATLEATATYDPSDLVLANGGHAAIVEIDASTYATR 491
Query: 115 VRATEIVMDVGESLNPAIDVGQVEGAFMQGYGLYVMEELMFSPSGVLYTRGPGTYKIPGF 174
V V D G +NP I GQ+ G Q G ++EE+++ G L T Y IP
Sbjct: 492 VTDFFAVEDCGTMINPMIVEGQIRGGIAQAIGQTLLEEVIYDDFGQLVTTTLMDYLIPTT 551
Query: 175 ADIPAEFNVSLLKGAPNPRAVYSSKAVGEPPLLL-ASSVYFAIRDAIDAYRKQELGREDY 233
D+P + + L+ P+P K +GE ++ ++V A+ DA+ +
Sbjct: 552 LDVP-DIRIRHLE-TPSPLVPGGIKGMGESAMISAPAAVVAAVNDAL--------AHLEV 601
Query: 234 YRLDSPATPAKIRLLCED 251
P TP +I ++
Sbjct: 602 VIETVPITPERIFRSIQE 619
>d1vlba4 d.133.1.1 (A:311-907) Aldehyde oxidoreductase
{Desulfovibrio gigas [TaxId: 879]}
Length = 597
Score = 139 bits (350), Expect = 4e-38
Identities = 50/224 (22%), Positives = 81/224 (36%), Gaps = 22/224 (9%)
Query: 28 WSICSQDACSKLNERLKPYKEKNPTGKWQDWVKAAFFDRTSLAATGYFKTPDIGYDMKKN 87
+ AC L + + P G + + + D+ + + + D
Sbjct: 394 TGNAIRVACENLLKACEK-----PGGGYYTYDELKAADKPTKITGNWTASGATHCDAVTG 448
Query: 88 EGAIFNYFGYGASVSEVEIDCLTGDHQVRATEIVMDVGESLNPAIDVGQVEGAFMQGYGL 147
G F + YG ++EV +D TG V ++ D+G N GQ+ G QG GL
Sbjct: 449 LGKPFVVYMYGVFMAEVTVDVATGQTTVDGMTLMADLGSLCNQLATDGQIYGGLAQGIGL 508
Query: 148 YVMEELMFSPSGVLYTRGPGTYKIPGFADIPAEFNVSLLKGAPNPRAVYSSKAVGEPPLL 207
+ E+ P IP + ++ + P P + + VGE PL
Sbjct: 509 ALSEDFEDIKKHATLV----GAGFPFIKQIPDKLDIVYVN-HPRPDGPFGASGVGELPL- 562
Query: 208 LASSVYFAIRDAI-DAYRKQELGREDYYRLDSPATPAKIRLLCE 250
+S + AI +AI A G Y PA P K+ +
Sbjct: 563 --TSPHAAIINAIKSA-----TGVRIY---RLPAYPEKVLEALK 596
>d1dgja4 d.133.1.1 (A:311-906) Aldehyde oxidoreductase
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 596
Score = 134 bits (338), Expect = 2e-36
Identities = 48/224 (21%), Positives = 79/224 (35%), Gaps = 24/224 (10%)
Query: 24 GNEYWSICSQDACSKLNERLKPYKEKNPTGKWQDWVKAAFFDRTSLAATGYFKTPDIGYD 83
+ AC L E ++ T + + G + P D
Sbjct: 392 SQVVTGNAIRVACEMLIEGMRKPGGGFFTPAEMKA------EGRPMRYDGKWTAPAKDCD 445
Query: 84 MKKNEGAIFNYFGYGASVSEVEIDCLTGDHQVRATEIVMDVGESLNPAIDVGQVEGAFMQ 143
K +G+ F + YG ++EV ++ TG V V D+G+ N + GQ+ G Q
Sbjct: 446 AK-GQGSPFACYMYGLFLTEVAVEVATGKATVEKMVCVADIGKICNKLVVDGQIYGGLAQ 504
Query: 144 GYGLYVMEELMFSPSGVLYTRGPGTYKIPGFADIPAEFNVSLLKGAPNPRAVYSSKAVGE 203
G GL + E+ + G IP IP + + ++ P + + VGE
Sbjct: 505 GVGLALSEDY----EDLKKHSTMGGAGIPSIKMIPDDIEIVYVE-TPRKDGPFGASGVGE 559
Query: 204 PPLLL-ASSVYFAIRDAIDAYRKQELGREDYYRLDSPATPAKIR 246
PL +++ I +A A PA P K+
Sbjct: 560 MPLTAPHAAIINGIYNACGA-----------RVRHLPARPEKVL 592
>d1rm6a2 d.133.1.1 (A:134-769) 4-hydroxybenzoyl-CoA reductase alpha
subunit HrcA, C-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 636
Score = 134 bits (338), Expect = 2e-36
Identities = 55/251 (21%), Positives = 97/251 (38%), Gaps = 18/251 (7%)
Query: 5 WAKNKPIQPLYWFFNSERVGNEYWSICSQDACSKLNERLKPYKEKNPTGKWQDWVKAAFF 64
N I ++ ++E ++P +Q+ VKAA
Sbjct: 395 MVGNASISAAEELKGVLVKAAAKKLDAREEDIEVIDEMFMVSGSQDPGLSFQEVVKAAMV 454
Query: 65 DRTSLAATGYFKTPDIGYDMKKNEGAIFN---YFGYGASVSEVEIDCLTGDHQVRATEIV 121
D ++ G + P KK G+ F Y A V E +D +TG +
Sbjct: 455 DSGTITVKGTYTCPTEFQGDKKIRGSAIGATMGFCYAAQVVEASVDEITGKVTAHKVWVA 514
Query: 122 MDVGESLNPAIDVGQVEGAFMQGYGLYVMEELMFSPSGVLYTRGPGTYKIPGFADIPAEF 181
+DVG++LNP GQ +G G G + EE ++ +G + Y++P + P +
Sbjct: 515 VDVGKALNPLAVEGQTQGGVWMGMGQALSEETVYD-NGRMVHGNILDYRVPTIVESP-DI 572
Query: 182 NVSLLKGAPNPRAVYSSKAVGEPPLLLASSVYFAIRDAI-DAYRKQELGREDYYRLDSPA 240
V +++ + +P + +K E L AI +A+ +A +G D P
Sbjct: 573 EVIIVE-SMDPNGPFGAKEASEGMLA---GFLPAIHEAVYEA-----VGVR---ATDFPL 620
Query: 241 TPAKIRLLCED 251
+P +I L +
Sbjct: 621 SPDRITELLDA 631
>d1ovla_ a.123.1.1 (A:) Orphan nuclear receptor NURR1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 236
Score = 29.6 bits (66), Expect = 0.39
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 170 KIPGFADIPAEFNVSLLKGA 189
KIPGFAD+P L + A
Sbjct: 61 KIPGFADLPKADQDLLFESA 80
>d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase
{Penicillium funiculosum [TaxId: 28572]}
Length = 318
Score = 28.5 bits (63), Expect = 1.0
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 43 LKPYKEKNPTGKWQDWVKAAFFDRTSLAATGYFKTPD 79
L +G + ++ + + TGY P
Sbjct: 176 LNARNTGTLSGSVLSFAQSGSYGANGMDTTGYLYVPQ 212
>d1n46a_ a.123.1.1 (A:) Thyroid hormone receptor beta (TR-beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 28.1 bits (62), Expect = 1.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 170 KIPGFADIPAEFNVSLLKGA 189
K+P F ++P E + LLKG
Sbjct: 79 KLPMFCELPCEDQIILLKGC 98
>d1pdua_ a.123.1.1 (A:) Nuclear hormone receptor HR38 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 230
Score = 28.0 bits (62), Expect = 1.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 170 KIPGFADIPAEFNVSLLKGA 189
KIPG+ D+ E L + A
Sbjct: 58 KIPGYFDLLPEDQELLFQSA 77
>d1pq9a_ a.123.1.1 (A:) Oxysterols receptor LXR-beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 239
Score = 27.7 bits (61), Expect = 1.3
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 170 KIPGFADIPAEFNVSLLKGAPNP----RAVYSSKAVGEPPLLLASSVY 213
++PGF + E ++LLK + E L Y
Sbjct: 69 QVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTY 116
>d2b50b1 a.123.1.1 (B:211-475) Peroxisome proliferator-activated
receptor delta, PPAR-DELTA {Human (Homo sapiens) [TaxId:
9606]}
Length = 265
Score = 27.6 bits (61), Expect = 1.5
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 170 KIPGFADIPAEFNVSLLKGA 189
IP F+ + V+LLK
Sbjct: 92 SIPSFSSLFLNDQVTLLKYG 111
>d1n83a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 27.4 bits (60), Expect = 1.9
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 170 KIPGFADIPAEFNVSLLKGA 189
+I GF ++ + LLK
Sbjct: 80 RIDGFMELCQNDQIVLLKAG 99
>d1osha_ a.123.1.1 (A:) Bile acid receptor FXR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 231
Score = 27.3 bits (60), Expect = 2.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 170 KIPGFADIPAEFNVSLLKGA 189
K+PGF + E ++LLKG+
Sbjct: 64 KLPGFQTLDHEDQIALLKGS 83
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300,
N-terminal domain {Bacteroides thetaiotaomicron [TaxId:
818]}
Length = 147
Score = 26.9 bits (58), Expect = 2.2
Identities = 7/70 (10%), Positives = 18/70 (25%)
Query: 170 KIPGFADIPAEFNVSLLKGAPNPRAVYSSKAVGEPPLLLASSVYFAIRDAIDAYRKQELG 229
++P F + E S+L + + + + F ++ I +
Sbjct: 10 QLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKEN 69
Query: 230 REDYYRLDSP 239
Sbjct: 70 IYTVIEQIEA 79
>d1pzla_ a.123.1.1 (A:) Hepatocyte nuclear factor 4-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 27.0 bits (59), Expect = 2.6
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 170 KIPGFADIPAEFNVSLLKGA 189
IP F ++P + V+LL+
Sbjct: 59 YIPAFCELPLDDQVALLRAH 78
>d2r40d1 a.123.1.1 (D:287-529) Ecdysone receptor {Noctuid moth
(Heliothis virescens) [TaxId: 7102]}
Length = 243
Score = 26.9 bits (59), Expect = 2.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 170 KIPGFADIPAEFNVSLLKGA 189
+PGFA I ++LLK
Sbjct: 70 GLPGFAKISQSDQITLLKAC 89
>d1nq7a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-beta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 244
Score = 26.6 bits (58), Expect = 3.4
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 170 KIPGFADIPAEFNVSLLKGA 189
+I GF ++ + LLK
Sbjct: 72 RITGFMELCQNDQILLLKSG 91
>d1fcya_ a.123.1.1 (A:) Retinoic acid receptor gamma (RAR-gamma)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 26.5 bits (58), Expect = 3.6
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 170 KIPGFADIPAEFNVSLLKGA 189
++PGF + ++LLK A
Sbjct: 66 RLPGFTGLSIADQITLLKAA 85
>d2fvja1 a.123.1.1 (A:207-477) Peroxisome proliferator activated
receptor gamma, PPAR-gamma {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 25.7 bits (56), Expect = 5.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 170 KIPGFADIPAEFNVSLLKGA 189
IPGF ++ V+LLK
Sbjct: 96 SIPGFVNLDLNDQVTLLKYG 115
>d2qw4a1 a.123.1.1 (A:32-264) Orphan nuclear receptor NR4A1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 25.8 bits (56), Expect = 6.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 170 KIPGFADIPAEFNVSLLKGA 189
KIPGFA++ LL+ A
Sbjct: 61 KIPGFAELSPADQDLLLESA 80
>d2p54a1 a.123.1.1 (A:202-468) Peroxisome proliferator activated
receptor alpha, PPAR-alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 267
Score = 25.7 bits (56), Expect = 6.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 170 KIPGFADIPAEFNVSLLKGA 189
IPGFA++ V+LLK
Sbjct: 92 AIPGFANLDLNDQVTLLKYG 111
>d2ftra1 d.58.4.15 (A:4-106) Hypothetical protein BH0200 {Bacillus
halodurans [TaxId: 86665]}
Length = 103
Score = 24.5 bits (53), Expect = 9.3
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 8/85 (9%)
Query: 151 EELMFSPSGVLYTRGPGTYKIPGFADIPAEFNVSLLKGAPNPRAVYSSKAV----GEPPL 206
E +M LY + F + + L + P R + ++ V GE
Sbjct: 1 ENMMVKLI-ALYEQPEDKQA---FDEHYFNTHAPLTRKIPGLRDMKVTRIVGSPMGESKF 56
Query: 207 LLASSVYFAIRDAIDAYRKQELGRE 231
L +Y+ +++ + + G+
Sbjct: 57 YLMCEMYYDDHESLQQAMRTDEGKA 81
>d1szqa_ e.44.1.1 (A:) 2-methylcitrate dehydratase PrpD {Escherichia
coli [TaxId: 562]}
Length = 473
Score = 25.3 bits (54), Expect = 9.4
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 212 VYFAIRDAIDAYRKQELGREDYYRLDSPATPAKIRLLCEDSITKEFPAPEPGSY 265
V + E R+D A KI + + T ++ PE +
Sbjct: 342 VAIPLLFGRLTAADYEDNVAQDKRID--ALREKINCFEDPAFTADYHDPEKRAI 393
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta
subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 325
Score = 25.3 bits (55), Expect = 9.4
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 6/69 (8%)
Query: 9 KPIQPLYWFFNSERVGNEYWSICSQDACSKLNERLK------PYKEKNPTGKWQDWVKAA 62
K Y R+ YW + D +L+ K ++ G +
Sbjct: 27 KKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHD 86
Query: 63 FFDRTSLAA 71
+L+A
Sbjct: 87 PHLLYTLSA 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.417
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,123,806
Number of extensions: 52353
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 29
Length of query: 287
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,254,276
Effective search space: 254618028
Effective search space used: 254618028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.2 bits)