BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14046
(857 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CKJ|A Chain A, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|B Chain B, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|C Chain C, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|D Chain D, Human Milk Xanthine Oxidoreductase
Length = 1333
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/774 (46%), Positives = 499/774 (64%), Gaps = 53/774 (6%)
Query: 1 MHGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKD 60
+H +AVTTVEGIGSTKT+LHPVQER+AK+HGSQCGFCTPGIVMSMY LLR+ P +PTM++
Sbjct: 80 LHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQP-EPTMEE 138
Query: 61 MEVALQGNLCRCTGYRPILEGFKTFTEEWERDRLTNGTNGINGSVQNGNGVCAMGENCCK 120
+E A QGNLCRCTGYRPIL+GF+TF + NCC
Sbjct: 139 IENAFQGNLCRCTGYRPILQGFRTFARDGGCCGGD-----------------GNNPNCCM 181
Query: 121 N-KKPGDXXXXXXLFSPSEFTPYDKSQEPTFPPEL-QLNDTYDKEYLQIRGPRATWYRPQ 178
N KK LF P EFTP D +QEP FPPEL +L DT K+ L+ G R TW +
Sbjct: 182 NQKKDHSVSLSPSLFKPEEFTPLDPTQEPIFPPELLRLKDTPRKQ-LRFEGERVTWIQAS 240
Query: 179 TLTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEENGVWIG 238
TL +LL+LKA+ P+AKLVVGN+EIG+E+KFK +P+++ P+ IPEL +G+ G
Sbjct: 241 TLKELLDLKAQHPDAKLVVGNTEIGIEMKFKNMLFPMIVCPAWIPELNSVEHGPDGISFG 300
Query: 239 GATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMTGSPISD 298
A L+ + L + + KLP+ K+ V+ ++E L WFAG Q+++VA++GGNI+T SPISD
Sbjct: 301 AACPLSIVEKTLVDAVAKLPAQKTEVFRGVLEQLRWFAGKQVKSVASVGGNIITASPISD 360
Query: 299 MNPILMAARCRLLLESKAEGTRE-VTMDGSFYTSYRKNIVRPDEVLRAIYIPHTAETQYF 357
+NP+ MA+ +L L S+ GTR V MD +F+ YRK ++ P+E+L +I IP++ E +YF
Sbjct: 361 LNPVFMASGAKLTLVSR--GTRRTVQMDHTFFPGYRKTLLSPEEILLSIEIPYSREGEYF 418
Query: 358 KAYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQMINK 417
A+KQA RR+DDIA V + V + V++ +GGMA T+ A KTT++ ++K
Sbjct: 419 SAFKQASRREDDIAKVTSGMRVLF--KPGTTEVQELALCYGGMANRTISALKTTQRQLSK 476
Query: 418 PWNQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYKFYIAVSVDTQVTPISSRD 477
W + LL+D L +L L APGGM+ +R +LTLS F+KFY+ +V ++ + D
Sbjct: 477 LWKEELLQDVCAGLAEELHLPPDAPGGMVDFRCTLTLSFFFKFYL--TVLQKLGQENLED 534
Query: 478 KSGAQTFHTLPTKSSQYFQVFRVKSGPGGSLIRDLADALPPSLTRLAPYFQVPSTQAKSD 537
K G PT +S L PP+ +L + +VP Q++ D
Sbjct: 535 KCGKLD----PTFASATL----------------LFQKDPPADVQL--FQEVPKGQSEED 572
Query: 538 LVGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGV 597
+VGRP+ H +A QA+GEA+YCDDIP+Y+ EL L V S++ HAKI S+D S A + G
Sbjct: 573 MVGRPLPHLAADMQASGEAVYCDDIPRYENELSLRLVTSTRAHAKIKSIDTSEAKKVPGF 632
Query: 598 RGWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTY 657
++ DVPG + GI +D+ +FA+D VTCVG IG V+A+ QRAA VK+TY
Sbjct: 633 VCFISADDVPGSN--ITGICNDETVFAKDKVTCVGHIIGAVVADTPEHTQRAAQGVKITY 690
Query: 658 EELPAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETNV 717
EELPAI +I++AI++ SF+ E + +G++ + F + D+++ GE+ +GGQEHFYLET+
Sbjct: 691 EELPAIITIEDAIKNNSFYGPELKIE-KGDLKKGFSEADNVVSGEIYIGGQEHFYLETHC 749
Query: 718 SVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKE 771
++AVPK E G ME+FVS+Q+ + Q A LGVP+NRIV + KR+GGGFGGKE
Sbjct: 750 TIAVPKGEAGEMELFVSTQNTMKTQSFVAKMLGVPANRIVVRVKRMGGGFGGKE 803
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 790 IAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERR 849
IAE VA + + R NL+ G+LTH+NQ LE TL RC+E+ S +Y R+
Sbjct: 923 IAECWMSEVAVTCGMPAEEVRRKNLYKEGDLTHFNQKLEGFTLPRCWEECLASSQYHARK 982
Query: 850 KQCEEFNR 857
+ ++FN+
Sbjct: 983 SEVDKFNK 990
>pdb|1N5X|A Chain A, Xanthine Dehydrogenase From Bovine Milk With Inhibitor
Tei- 6720 Bound
pdb|1N5X|B Chain B, Xanthine Dehydrogenase From Bovine Milk With Inhibitor
Tei- 6720 Bound
Length = 1331
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/773 (45%), Positives = 498/773 (64%), Gaps = 52/773 (6%)
Query: 1 MHGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKD 60
+H +AVTTVEGIGSTKT+LHPVQER+AK+HGSQCGFCTPGIVMSMY LLR+ P +PT+++
Sbjct: 79 LHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQP-EPTVEE 137
Query: 61 MEVALQGNLCRCTGYRPILEGFKTFTEEWERDRLTNGTNGINGSVQNGNGVCAMGENCCK 120
+E A QGNLCRCTGYRPIL+GF+TF +
Sbjct: 138 IEDAFQGNLCRCTGYRPILQGFRTFAKNGGCCGGNGNNPNCC----------------MN 181
Query: 121 NKKPGDXXXXXXLFSPSEFTPYDKSQEPTFPPEL-QLNDTYDKEYLQIRGPRATWYRPQT 179
KK LF+P EF P D +QEP FPPEL +L D K+ L+ G R TW + T
Sbjct: 182 QKKDHTVTLSPSLFNPEEFMPLDPTQEPIFPPELLRLKDVPPKQ-LRFEGERVTWIQAST 240
Query: 180 LTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEENGVWIGG 239
L +LL+LKA+ PEAKLVVGN+EIG+E+KFK +P++I P+ IPEL G+ G
Sbjct: 241 LKELLDLKAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGISFGA 300
Query: 240 ATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMTGSPISDM 299
A +L+ + L E + KLP+ K+ V+ ++E L WFAG Q+++VA++GGNI+T SPISD+
Sbjct: 301 ACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITASPISDL 360
Query: 300 NPILMAARCRLLLESKAEGTRE-VTMDGSFYTSYRKNIVRPDEVLRAIYIPHTAETQYFK 358
NP+ MA+ +L + S+ GTR V MD +F+ SYRK ++ P+E+L +I IP++ E ++F
Sbjct: 361 NPVFMASGTKLTIVSR--GTRRTVPMDHTFFPSYRKTLLGPEEILLSIEIPYSREDEFFS 418
Query: 359 AYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQMINKP 418
A+KQA RR+DDIA V V Q VK+ +GGMA T+ A KTT++ ++K
Sbjct: 419 AFKQASRREDDIAKVTCGMRVLF--QPGSMQVKELALCYGGMADRTISALKTTQKQLSKF 476
Query: 419 WNQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYKFYIAVSVDTQVTPISSRDK 478
WN+ LL+D L +L L APGGMI++RR+LTLS F+KFY+ V + S+DK
Sbjct: 477 WNEKLLQDVCAGLAEELSLSPDAPGGMIEFRRTLTLSFFFKFYLTV---LKKLGKDSKDK 533
Query: 479 SGAQTFHTLPTKSSQYFQVFRVKSGPGGSLIRDLADALPPSLTRLAPYFQVPSTQAKSDL 538
G PT +S L PP+ +L + +VP+ Q+K D
Sbjct: 534 CGKLD----PTYTSATL----------------LFQKHPPANIQL--FQEVPNGQSKEDT 571
Query: 539 VGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVR 598
VGRP+ H +A QA+GEA+YCDDIP+Y+ EL+L V S++ HAKI S+D S A + G
Sbjct: 572 VGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFV 631
Query: 599 GWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYE 658
++ D+PG G+ +D+ +FA+D VTCVG IG V+A+ A+RAA +VKVTYE
Sbjct: 632 CFLSADDIPGSNET--GLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYE 689
Query: 659 ELPAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETNVS 718
+LPAI +I++AI++ SF+ E + +G++ + F + D+++ GE+ +GGQ+HFYLET+ +
Sbjct: 690 DLPAIITIEDAIKNNSFYGSELKIE-KGDLKKGFSEADNVVSGELYIGGQDHFYLETHCT 748
Query: 719 VAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKE 771
+A+PK E+G ME+FVS+Q+ + Q A LGVP NRI+ + KR+GGGFGGKE
Sbjct: 749 IAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKE 801
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 766 GFGGKEKLQSELYGLFTEVREDDWIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQ 825
GFGG + L +IAE VA L + N++ G+LTH+NQ
Sbjct: 912 GFGGPQAL---------------FIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQ 956
Query: 826 VLEHCTLGRCFEQVHESGKYKERRKQCEEFNR 857
LE ++ RC+++ +S +Y R+ + ++FN+
Sbjct: 957 RLEGFSVPRCWDECLKSSQYYARKSEVDKFNK 988
>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1FO4|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1V97|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1V97|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1VDV|A Chain A, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|1VDV|B Chain B, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|3BDJ|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With A Covalently Bound Oxipurinol Inhibitor
pdb|3BDJ|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With A Covalently Bound Oxipurinol Inhibitor
pdb|3AM9|A Chain A, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AM9|B Chain B, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AMZ|A Chain A, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AMZ|B Chain B, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AX7|A Chain A, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX7|B Chain B, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX9|A Chain A, Bovine Xanthone Oxidase, Protease Cleaved Form
pdb|3AX9|B Chain B, Bovine Xanthone Oxidase, Protease Cleaved Form
Length = 1332
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/773 (45%), Positives = 498/773 (64%), Gaps = 52/773 (6%)
Query: 1 MHGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKD 60
+H +AVTTVEGIGSTKT+LHPVQER+AK+HGSQCGFCTPGIVMSMY LLR+ P +PT+++
Sbjct: 80 LHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQP-EPTVEE 138
Query: 61 MEVALQGNLCRCTGYRPILEGFKTFTEEWERDRLTNGTNGINGSVQNGNGVCAMGENCCK 120
+E A QGNLCRCTGYRPIL+GF+TF +
Sbjct: 139 IEDAFQGNLCRCTGYRPILQGFRTFAKNGGCCGGNGNNPNCC----------------MN 182
Query: 121 NKKPGDXXXXXXLFSPSEFTPYDKSQEPTFPPEL-QLNDTYDKEYLQIRGPRATWYRPQT 179
KK LF+P EF P D +QEP FPPEL +L D K+ L+ G R TW + T
Sbjct: 183 QKKDHTVTLSPSLFNPEEFMPLDPTQEPIFPPELLRLKDVPPKQ-LRFEGERVTWIQAST 241
Query: 180 LTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEENGVWIGG 239
L +LL+LKA+ PEAKLVVGN+EIG+E+KFK +P++I P+ IPEL G+ G
Sbjct: 242 LKELLDLKAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGISFGA 301
Query: 240 ATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMTGSPISDM 299
A +L+ + L E + KLP+ K+ V+ ++E L WFAG Q+++VA++GGNI+T SPISD+
Sbjct: 302 ACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITASPISDL 361
Query: 300 NPILMAARCRLLLESKAEGTRE-VTMDGSFYTSYRKNIVRPDEVLRAIYIPHTAETQYFK 358
NP+ MA+ +L + S+ GTR V MD +F+ SYRK ++ P+E+L +I IP++ E ++F
Sbjct: 362 NPVFMASGTKLTIVSR--GTRRTVPMDHTFFPSYRKTLLGPEEILLSIEIPYSREDEFFS 419
Query: 359 AYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQMINKP 418
A+KQA RR+DDIA V V Q VK+ +GGMA T+ A KTT++ ++K
Sbjct: 420 AFKQASRREDDIAKVTCGMRVLF--QPGSMQVKELALCYGGMADRTISALKTTQKQLSKF 477
Query: 419 WNQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYKFYIAVSVDTQVTPISSRDK 478
WN+ LL+D L +L L APGGMI++RR+LTLS F+KFY+ V + S+DK
Sbjct: 478 WNEKLLQDVCAGLAEELSLSPDAPGGMIEFRRTLTLSFFFKFYLTV---LKKLGKDSKDK 534
Query: 479 SGAQTFHTLPTKSSQYFQVFRVKSGPGGSLIRDLADALPPSLTRLAPYFQVPSTQAKSDL 538
G PT +S L PP+ +L + +VP+ Q+K D
Sbjct: 535 CGKLD----PTYTSATL----------------LFQKHPPANIQL--FQEVPNGQSKEDT 572
Query: 539 VGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVR 598
VGRP+ H +A QA+GEA+YCDDIP+Y+ EL+L V S++ HAKI S+D S A + G
Sbjct: 573 VGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFV 632
Query: 599 GWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYE 658
++ D+PG G+ +D+ +FA+D VTCVG IG V+A+ A+RAA +VKVTYE
Sbjct: 633 CFLSADDIPGSNET--GLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYE 690
Query: 659 ELPAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETNVS 718
+LPAI +I++AI++ SF+ E + +G++ + F + D+++ GE+ +GGQ+HFYLET+ +
Sbjct: 691 DLPAIITIEDAIKNNSFYGSELKIE-KGDLKKGFSEADNVVSGELYIGGQDHFYLETHCT 749
Query: 719 VAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKE 771
+A+PK E+G ME+FVS+Q+ + Q A LGVP NRI+ + KR+GGGFGGKE
Sbjct: 750 IAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKE 802
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 766 GFGGKEKLQSELYGLFTEVREDDWIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQ 825
GFGG + L +IAE VA L + N++ G+LTH+NQ
Sbjct: 913 GFGGPQAL---------------FIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQ 957
Query: 826 VLEHCTLGRCFEQVHESGKYKERRKQCEEFNR 857
LE ++ RC+++ +S +Y R+ + ++FN+
Sbjct: 958 RLEGFSVPRCWDECLKSSQYYARKSEVDKFNK 989
>pdb|3UNA|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nad Bound
pdb|3UNA|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nad Bound
pdb|3UNC|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNC|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNI|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nadh Bound
pdb|3UNI|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nadh Bound
Length = 1332
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/773 (45%), Positives = 498/773 (64%), Gaps = 52/773 (6%)
Query: 1 MHGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKD 60
+H +AVTTVEGIGSTKT+LHPVQER+AK+HGSQCGFCTPGIVMSMY LLR+ P +PT+++
Sbjct: 80 LHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQP-EPTVEE 138
Query: 61 MEVALQGNLCRCTGYRPILEGFKTFTEEWERDRLTNGTNGINGSVQNGNGVCAMGENCCK 120
+E A QGNLCRCTGYRPIL+GF+TF +
Sbjct: 139 IEDAFQGNLCRCTGYRPILQGFRTFAKNGGCCGGNGNNPNCC----------------MN 182
Query: 121 NKKPGDXXXXXXLFSPSEFTPYDKSQEPTFPPEL-QLNDTYDKEYLQIRGPRATWYRPQT 179
KK LF+P EF P D +QEP FPPEL +L D K+ L+ G R TW + T
Sbjct: 183 QKKDHTVTLSPSLFNPEEFMPLDPTQEPIFPPELLRLKDVPPKQ-LRFEGERVTWIQAST 241
Query: 180 LTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEENGVWIGG 239
L +LL+LKA+ PEAKLVVGN+EIG+E+KFK +P++I P+ IPEL G+ G
Sbjct: 242 LKELLDLKAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGISFGA 301
Query: 240 ATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMTGSPISDM 299
A +L+ + L E + KLP+ K+ V+ ++E L WFAG Q+++VA++GGNI+T SPISD+
Sbjct: 302 ACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITASPISDL 361
Query: 300 NPILMAARCRLLLESKAEGTRE-VTMDGSFYTSYRKNIVRPDEVLRAIYIPHTAETQYFK 358
NP+ MA+ +L + S+ GTR V MD +F+ SYRK ++ P+E+L +I IP++ E ++F
Sbjct: 362 NPVFMASGTKLTIVSR--GTRRTVPMDHTFFPSYRKTLLGPEEILLSIEIPYSREDEFFS 419
Query: 359 AYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQMINKP 418
A+KQA RR+DDIA V V Q VK+ +GGMA T+ A KTT++ ++K
Sbjct: 420 AFKQASRREDDIAKVTCGMRVLF--QPGSMQVKELALCYGGMADRTISALKTTQKQLSKF 477
Query: 419 WNQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYKFYIAVSVDTQVTPISSRDK 478
WN+ LL+D L +L L APGGMI++RR+LTLS F+KFY+ V + S+DK
Sbjct: 478 WNEKLLQDVCAGLAEELSLSPDAPGGMIEFRRTLTLSFFFKFYLTV---LKKLGKDSKDK 534
Query: 479 SGAQTFHTLPTKSSQYFQVFRVKSGPGGSLIRDLADALPPSLTRLAPYFQVPSTQAKSDL 538
G PT +S L PP+ +L + +VP+ Q+K D
Sbjct: 535 CGKLD----PTYTSATL----------------LFQKDPPANIQL--FQEVPNGQSKEDT 572
Query: 539 VGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVR 598
VGRP+ H +A QA+GEA+YCDDIP+Y+ EL+L V S++ HAKI S+D S A + G
Sbjct: 573 VGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFV 632
Query: 599 GWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYE 658
++ D+PG G+ +D+ +FA+D VTCVG IG V+A+ A+RAA +VKVTYE
Sbjct: 633 CFLSADDIPGSNET--GLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYE 690
Query: 659 ELPAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETNVS 718
+LPAI +I++AI++ SF+ E + +G++ + F + D+++ GE+ +GGQ+HFYLET+ +
Sbjct: 691 DLPAIITIEDAIKNNSFYGSELKIE-KGDLKKGFSEADNVVSGELYIGGQDHFYLETHCT 749
Query: 719 VAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKE 771
+A+PK E+G ME+FVS+Q+ + Q A LGVP NRI+ + KR+GGGFGGKE
Sbjct: 750 IAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKE 802
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 766 GFGGKEKLQSELYGLFTEVREDDWIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQ 825
GFGG + L +IAE VA L + N++ G+LTH+NQ
Sbjct: 913 GFGGPQAL---------------FIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQ 957
Query: 826 VLEHCTLGRCFEQVHESGKYKERRKQCEEFNR 857
LE ++ RC+++ +S +Y R+ + ++FN+
Sbjct: 958 RLEGFSVPRCWDECLKSSQYYARKSEVDKFNK 989
>pdb|2E1Q|A Chain A, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|B Chain B, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|C Chain C, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|D Chain D, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
Length = 1333
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/773 (46%), Positives = 498/773 (64%), Gaps = 53/773 (6%)
Query: 1 MHGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKD 60
+H +AVTTVEGIGSTKT+LHPVQER+AK+HGSQCGFCTPGIVMSMY LLR+ P +PTM++
Sbjct: 80 LHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQP-EPTMEE 138
Query: 61 MEVALQGNLCRCTGYRPILEGFKTFTEEWERDRLTNGTNGINGSVQNGNGVCAMGENCCK 120
+E A QGNLCRCTGYRPIL+GF+TF + NCC
Sbjct: 139 IENAFQGNLCRCTGYRPILQGFRTFARDGGCCGGD-----------------GNNPNCCM 181
Query: 121 N-KKPGDXXXXXXLFSPSEFTPYDKSQEPTFPPEL-QLNDTYDKEYLQIRGPRATWYRPQ 178
N KK LF P EFTP D +QEP FPPEL +L DT K+ L+ G R TW +
Sbjct: 182 NQKKDHSVSLSPSLFKPEEFTPLDPTQEPIFPPELLRLKDTPRKQ-LRFEGERVTWIQAS 240
Query: 179 TLTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEENGVWIG 238
TL +LL+LKA+ P+AKLVVGN+EIG+E+KFK +P+++ P+ IPEL +G+ G
Sbjct: 241 TLKELLDLKAQHPDAKLVVGNTEIGIEMKFKNMLFPMIVCPAWIPELNSVEHGPDGISFG 300
Query: 239 GATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMTGSPISD 298
A L+ + L + + KLP+ K+ V+ ++E L WFAG Q+++VA++GGNI+T SPISD
Sbjct: 301 AACPLSIVEKTLVDAVAKLPAQKTEVFRGVLEQLRWFAGKQVKSVASVGGNIITASPISD 360
Query: 299 MNPILMAARCRLLLESKAEGTRE-VTMDGSFYTSYRKNIVRPDEVLRAIYIPHTAETQYF 357
+NP+ MA+ +L L S+ GTR V MD +F+ YRK ++ P+E+L +I IP++ E +YF
Sbjct: 361 LNPVFMASGAKLTLVSR--GTRRTVQMDHTFFPGYRKTLLSPEEILLSIEIPYSREGEYF 418
Query: 358 KAYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQMINK 417
A+KQA RR+DDIA V + V + V++ +GGMA T+ A KTT++ ++K
Sbjct: 419 SAFKQASRREDDIAKVTSGMRVLF--KPGTTEVQELALCYGGMANRTISALKTTQRQLSK 476
Query: 418 PWNQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYKFYIAVSVDTQVTPISSRD 477
W + LL+D L +L L APGGM+ +R +LTLS F+KFY+ +V ++ + D
Sbjct: 477 LWKEELLQDVCAGLAEELHLPPDAPGGMVDFRCTLTLSFFFKFYL--TVLQKLGQENLED 534
Query: 478 KSGAQTFHTLPTKSSQYFQVFRVKSGPGGSLIRDLADALPPSLTRLAPYFQVPSTQAKSD 537
K G PT +S L PP+ +L + +VP Q++ D
Sbjct: 535 KCGKLD----PTFASATL----------------LFQKDPPADVQL--FQEVPKGQSEED 572
Query: 538 LVGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGV 597
+VGRP+ H +A QA+GEA+YCDDIP+Y+ EL L V S++ HAKI S+D S A + G
Sbjct: 573 MVGRPLPHLAADMQASGEAVYCDDIPRYENELSLRLVTSTRAHAKIKSIDTSEAKKVPGF 632
Query: 598 RGWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTY 657
++ DVPG + GI +D+ +FA+D VTCVG IG V+A+ QRAA VK+TY
Sbjct: 633 VCFISADDVPGSN--ITGICNDETVFAKDKVTCVGHIIGAVVADTPEHTQRAAQGVKITY 690
Query: 658 EELPAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETNV 717
EELPAI +I++AI++ SF+ E + +G++ + F + D+++ GE+ +GGQEHFYLET+
Sbjct: 691 EELPAIITIEDAIKNNSFYGPELKIE-KGDLKKGFSEADNVVSGEIYIGGQEHFYLETHC 749
Query: 718 SVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGK 770
++AVPK E G ME+FVS+Q+ + Q A LGVP+NRIV + KR+GGGFGGK
Sbjct: 750 TIAVPKGEAGEMELFVSTQNTMKTQSFVAKMLGVPANRIVVRVKRMGGGFGGK 802
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 790 IAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERR 849
IAE VA + + R NL+ G+LTH+NQ LE TL RC+E+ S +Y R+
Sbjct: 923 IAECWMSEVAVTCGMPAEEVRRKNLYKEGDLTHFNQKLEGFTLPRCWEECLASSQYHARK 982
Query: 850 KQCEEFNR 857
+ ++FN+
Sbjct: 983 SEVDKFNK 990
>pdb|1WYG|A Chain A, Crystal Structure Of A Rat Xanthine Dehydrogenase Triple
Mutant (C535a, C992r And C1324s)
Length = 1331
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/775 (45%), Positives = 497/775 (64%), Gaps = 56/775 (7%)
Query: 1 MHGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKD 60
+H +AVTTVEGIG+T+ KLHPVQER+A++HGSQCGFCTPGIVMSMY LLR+ P +PT+++
Sbjct: 80 LHHVAVTTVEGIGNTQ-KLHPVQERIARSHGSQCGFCTPGIVMSMYTLLRNQP-EPTVEE 137
Query: 61 MEVALQGNLCRCTGYRPILEGFKTFTEEWERDRLTNGTNGINGSVQNGNGVCAMGENCCK 120
+E A QGNLCRCTGYRPIL+GF+TF ++ + NCC
Sbjct: 138 IENAFQGNLCRCTGYRPILQGFRTFAKDGGCCGGS-----------------GNNPNCCM 180
Query: 121 NK-KPGDXXXXXXLFSPSEFTPYDKSQEPTFPPEL-QLNDTYDKEYLQIRGPRATWYRPQ 178
N+ K LF+P +F P D +QEP FPPEL +L DT K+ L+ G R TW +
Sbjct: 181 NQTKDQTVSLSPSLFNPEDFKPLDPTQEPIFPPELLRLKDTPQKK-LRFEGERVTWIQAS 239
Query: 179 TLTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEENGVWIG 238
T+ +LL+LKA+ P+AKLVVGN+EIG+E+KFK +P+++ P+ IPEL G+ G
Sbjct: 240 TMEELLDLKAQHPDAKLVVGNTEIGIEMKFKNMLFPLIVCPAWIPELNSVVHGPEGISFG 299
Query: 239 GATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMTGSPISD 298
+ L+ + ++L+E+I KLP K+ V+ ++E L WFAG Q+++VA+IGGNI+T SPISD
Sbjct: 300 ASCPLSLVESVLAEEIAKLPEQKTEVFRGVMEQLRWFAGKQVKSVASIGGNIITASPISD 359
Query: 299 MNPILMAARCRLLLESKAEGTRE-VTMDGSFYTSYRKNIVRPDEVLRAIYIPHTAETQYF 357
+NP+ MA+ +L L S+ GTR V MD +F+ YRK ++RP+E+L +I IP++ E ++F
Sbjct: 360 LNPVFMASGAKLTLVSR--GTRRTVRMDHTFFPGYRKTLLRPEEILLSIEIPYSKEGEFF 417
Query: 358 KAYKQARRRDDDIAIVNAAFNVTLDIQSDGAV-VKDCEFAFGGMAPTTVLAKKTTEQMIN 416
A+KQA RR+DDIA V + V G + V++ FGGMA T+ A KTT + ++
Sbjct: 418 SAFKQASRREDDIAKVTSGMRVLF---KPGTIEVQELSLCFGGMADRTISALKTTPKQLS 474
Query: 417 KPWNQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYKFYIAVSVDTQVTPISSR 476
K WN+ LL+ L +L L APGGM+++RR+LTLS F+KFY+ V
Sbjct: 475 KSWNEELLQSVCAGLAEELQLAPDAPGGMVEFRRTLTLSFFFKFYLTV-----------L 523
Query: 477 DKSGAQTFHTLPTKSSQYFQVFRVKSGPGGSLIRDLADALPPSLTRLAPYFQVPSTQAKS 536
K G + K F + L PP+ +L + +VP Q++
Sbjct: 524 QKLGRADLEDMAGKLDPTFASATL-----------LFQKDPPANVQL--FQEVPKDQSEE 570
Query: 537 DLVGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEG 596
D+VGRP+ H +A QA+GEA+YCDDIP+Y+ EL L V S++ HAKI S+D S A + G
Sbjct: 571 DMVGRPLPHLAANMQASGEAVYCDDIPRYENELSLRLVTSTRAHAKITSIDTSEAKKVPG 630
Query: 597 VRGWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVT 656
++ DVP G+ +D+ +FA+D VTCVG IG V+A+ AQRAA VK+T
Sbjct: 631 FVCFLTAEDVPNSN--ATGLFNDETVFAKDEVTCVGHIIGAVVADTPEHAQRAARGVKIT 688
Query: 657 YEELPAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETN 716
YE+LPAI +IQ+AI + SF+ E + +G++ + F + D+++ GE+ +GGQEHFYLETN
Sbjct: 689 YEDLPAIITIQDAINNNSFYGSEIKIE-KGDLKKGFSEADNVVSGELYIGGQEHFYLETN 747
Query: 717 VSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKE 771
++AVPK E G ME+FVS+Q+ + Q A LGVP NRIV + KR+GGGFGGKE
Sbjct: 748 CTIAVPKGEAGEMELFVSTQNTMKTQSFVAKMLGVPDNRIVVRVKRMGGGFGGKE 802
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%)
Query: 790 IAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERR 849
IAE VA L + R N++ G+LTH+NQ LE TL RC+++ S +Y R+
Sbjct: 922 IAEYWMSEVAITCGLPAEEVRRKNMYKEGDLTHFNQKLEGFTLPRCWDECIASSQYLARK 981
Query: 850 KQCEEFNR 857
++ E+FNR
Sbjct: 982 REVEKFNR 989
>pdb|3AN1|A Chain A, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
pdb|3AN1|B Chain B, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
Length = 1331
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/775 (45%), Positives = 496/775 (64%), Gaps = 56/775 (7%)
Query: 1 MHGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKD 60
+H +AVTTVEGIG+T+ KLHPVQER+A++HGSQCGFCTPGIVMSMY LLR+ P +PT+++
Sbjct: 80 LHHVAVTTVEGIGNTQ-KLHPVQERIARSHGSQCGFCTPGIVMSMYTLLRNQP-EPTVEE 137
Query: 61 MEVALQGNLCRCTGYRPILEGFKTFTEEWERDRLTNGTNGINGSVQNGNGVCAMGENCCK 120
+E A QGNLCRCTGYRPIL+GF+TF ++ + NCC
Sbjct: 138 IENAFQGNLCRCTGYRPILQGFRTFAKDGGCCGGS-----------------GNNPNCCM 180
Query: 121 NK-KPGDXXXXXXLFSPSEFTPYDKSQEPTFPPEL-QLNDTYDKEYLQIRGPRATWYRPQ 178
N+ K LF+P +F P D +QEP FPPEL +L DT K+ L+ G R TW +
Sbjct: 181 NQTKDQTVSLSPSLFNPEDFKPLDPTQEPIFPPELLRLKDTPQKK-LRFEGERVTWIQAS 239
Query: 179 TLTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEENGVWIG 238
T+ +LL+LKA+ P+AKLVVGN+EIG+E+KFK +P+++ P+ IPEL G+ G
Sbjct: 240 TMEELLDLKAQHPDAKLVVGNTEIGIEMKFKNMLFPLIVCPAWIPELNSVVHGPEGISFG 299
Query: 239 GATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMTGSPISD 298
+ L+ + ++L+E+I KLP K+ V+ ++E L WFAG Q+++VA+IGGNI+T SPISD
Sbjct: 300 ASCPLSLVESVLAEEIAKLPEQKTEVFRGVMEQLRWFAGKQVKSVASIGGNIITASPISD 359
Query: 299 MNPILMAARCRLLLESKAEGTRE-VTMDGSFYTSYRKNIVRPDEVLRAIYIPHTAETQYF 357
+NP+ MA+ +L L S+ GTR V MD +F+ YRK ++RP+E+L +I IP++ E ++F
Sbjct: 360 LNPVFMASGAKLTLVSR--GTRRTVRMDHTFFPGYRKTLLRPEEILLSIEIPYSKEGEFF 417
Query: 358 KAYKQARRRDDDIAIVNAAFNVTLDIQSDGAV-VKDCEFAFGGMAPTTVLAKKTTEQMIN 416
A+KQA RR+ DIA V + V G + V++ FGGMA T+ A KTT + ++
Sbjct: 418 SAFKQASRREADIAKVTSGMRVLF---KPGTIEVQELSLCFGGMADRTISALKTTPKQLS 474
Query: 417 KPWNQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYKFYIAVSVDTQVTPISSR 476
K WN+ LL+ L +L L APGGM+++RR+LTLS F+KFY+ V
Sbjct: 475 KSWNEELLQSVCAGLAEELQLAPDAPGGMVEFRRTLTLSFFFKFYLTV-----------L 523
Query: 477 DKSGAQTFHTLPTKSSQYFQVFRVKSGPGGSLIRDLADALPPSLTRLAPYFQVPSTQAKS 536
K G + K F + L PP+ +L + +VP Q++
Sbjct: 524 QKLGRADLEDMCGKLDPTFASATL-----------LFQKDPPANVQL--FQEVPKDQSEE 570
Query: 537 DLVGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEG 596
D+VGRP+ H +A QA+GEA+YCDDIP+Y+ EL L V S++ HAKI S+D S A + G
Sbjct: 571 DMVGRPLPHLAANMQASGEAVYCDDIPRYENELSLRLVTSTRAHAKITSIDTSEAKKVPG 630
Query: 597 VRGWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVT 656
++ DVP G+ +D+ +FA+D VTCVG IG V+A+ AQRAA VK+T
Sbjct: 631 FVCFLTAEDVPNSN--ATGLFNDETVFAKDEVTCVGHIIGAVVADTPEHAQRAARGVKIT 688
Query: 657 YEELPAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETN 716
YE+LPAI +IQ+AI + SF+ E + +G++ + F + D+++ GE+ +GGQEHFYLETN
Sbjct: 689 YEDLPAIITIQDAINNNSFYGSEIKIE-KGDLKKGFSEADNVVSGELYIGGQEHFYLETN 747
Query: 717 VSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKE 771
++AVPK E G ME+FVS+Q+ + Q A LGVP NRIV + KR+GGGFGGKE
Sbjct: 748 CTIAVPKGEAGEMELFVSTQNTMKTQSFVAKMLGVPDNRIVVRVKRMGGGFGGKE 802
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%)
Query: 790 IAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERR 849
IAE VA L + R N++ G+LTH+NQ LE TL RC+++ S +Y R+
Sbjct: 922 IAEYWMSEVAITCGLPAEEVRRKNMYKEGDLTHFNQKLEGFTLPRCWDECIASSQYLARK 981
Query: 850 KQCEEFNR 857
++ E+FNR
Sbjct: 982 REVEKFNR 989
>pdb|2E3T|A Chain A, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
pdb|2E3T|B Chain B, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
Length = 1331
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/775 (45%), Positives = 495/775 (63%), Gaps = 56/775 (7%)
Query: 1 MHGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKD 60
+H +AVTTVEGIG+T+ KLHPVQER+A++HGSQCGFCTPGIVMSMY LLR+ P +PT+++
Sbjct: 80 LHHVAVTTVEGIGNTQ-KLHPVQERIARSHGSQCGFCTPGIVMSMYTLLRNQP-EPTVEE 137
Query: 61 MEVALQGNLCRCTGYRPILEGFKTFTEEWERDRLTNGTNGINGSVQNGNGVCAMGENCCK 120
+E A QGNLCRCTGYRPIL+GF+TF ++ + NCC
Sbjct: 138 IENAFQGNLCRCTGYRPILQGFRTFAKDGGCCGGS-----------------GNNPNCCM 180
Query: 121 NK-KPGDXXXXXXLFSPSEFTPYDKSQEPTFPPEL-QLNDTYDKEYLQIRGPRATWYRPQ 178
N+ K LF+P +F P D +QEP FPPEL +L DT K+ L+ G R TW +
Sbjct: 181 NQTKDQTVSLSPSLFNPEDFKPLDPTQEPIFPPELLRLKDTPQKK-LRFEGERVTWIQAS 239
Query: 179 TLTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEENGVWIG 238
T+ +LL+LKA+ P+AKLVVGN+EIG+E+KFK +P+++ P+ IPEL G+ G
Sbjct: 240 TMEELLDLKAQHPDAKLVVGNTEIGIEMKFKNMLFPLIVCPAWIPELNSVVHGPEGISFG 299
Query: 239 GATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMTGSPISD 298
+ L+ + ++L+E+I KLP K+ V+ ++E L AG Q+++VA+IGGNI+T SPISD
Sbjct: 300 ASCPLSLVESVLAEEIAKLPEQKTEVFRGVMEQLRALAGKQVKSVASIGGNIITASPISD 359
Query: 299 MNPILMAARCRLLLESKAEGTRE-VTMDGSFYTSYRKNIVRPDEVLRAIYIPHTAETQYF 357
+NP+ MA+ +L L S+ GTR V MD +F+ YRK ++RP+E+L +I IP++ E ++F
Sbjct: 360 LNPVFMASGAKLTLVSR--GTRRTVRMDHTFFPGYRKTLLRPEEILLSIEIPYSKEGEFF 417
Query: 358 KAYKQARRRDDDIAIVNAAFNVTLDIQSDGAV-VKDCEFAFGGMAPTTVLAKKTTEQMIN 416
A+KQA RR+DDIA V + V G + V++ FGGMA T+ A KTT + ++
Sbjct: 418 SAFKQASRREDDIAKVTSGMRVLF---KPGTIEVQELSLCFGGMADRTISALKTTPKQLS 474
Query: 417 KPWNQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYKFYIAVSVDTQVTPISSR 476
K WN+ LL+ L +L L APGGM+++RR+LTLS F+KFY+ V
Sbjct: 475 KSWNEELLQSVCAGLAEELQLAPDAPGGMVEFRRTLTLSFFFKFYLTV-----------L 523
Query: 477 DKSGAQTFHTLPTKSSQYFQVFRVKSGPGGSLIRDLADALPPSLTRLAPYFQVPSTQAKS 536
K G + K F + L PP+ +L + +VP Q++
Sbjct: 524 QKLGRADLEDMCGKLDPTFASATL-----------LFQKDPPANVQL--FQEVPKDQSEE 570
Query: 537 DLVGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEG 596
D+VGRP+ H +A QA+GEA+YCDDIP+Y+ EL L V S++ HAKI S+D S A + G
Sbjct: 571 DMVGRPLPHLAANMQASGEAVYCDDIPRYENELSLRLVTSTRAHAKITSIDTSEAKKVPG 630
Query: 597 VRGWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVT 656
++ DVP G+ +D+ +FA+D VTCVG IG V+A+ AQRAA VK+T
Sbjct: 631 FVCFLTAEDVPNSN--ATGLFNDETVFAKDEVTCVGHIIGAVVADTPEHAQRAARGVKIT 688
Query: 657 YEELPAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETN 716
YE+LPAI +IQ+AI + SF+ E + +G++ + F + D+++ GE+ +GGQEHFYLETN
Sbjct: 689 YEDLPAIITIQDAINNNSFYGSEIKIE-KGDLKKGFSEADNVVSGELYIGGQEHFYLETN 747
Query: 717 VSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKE 771
++AVPK E G ME+FVS+Q+ + Q A LGVP NRIV + KR+GGGFGGKE
Sbjct: 748 CTIAVPKGEAGEMELFVSTQNTMKTQSFVAKMLGVPDNRIVVRVKRMGGGFGGKE 802
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%)
Query: 790 IAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERR 849
IAE VA L + R N++ G+LTH+NQ LE TL RC+++ S +Y R+
Sbjct: 922 IAEYWMSEVAITCGLPAEEVRRKNMYKEGDLTHFNQKLEGFTLPRCWDECIASSQYLARK 981
Query: 850 KQCEEFNR 857
++ E+FNR
Sbjct: 982 REVEKFNR 989
>pdb|3ZYV|A Chain A, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|B Chain B, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|C Chain C, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|D Chain D, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
Length = 1335
Score = 560 bits (1442), Expect = e-159, Method: Compositional matrix adjust.
Identities = 309/772 (40%), Positives = 450/772 (58%), Gaps = 51/772 (6%)
Query: 1 MHGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKD 60
+HG AVTTVEGIGSTKT++HPVQER+AK HG+QCGFCTPG+VMS+Y LLR+ P T +
Sbjct: 84 LHGAAVTTVEGIGSTKTRIHPVQERIAKGHGTQCGFCTPGMVMSIYTLLRNHPEPSTEQI 143
Query: 61 MEVALQGNLCRCTGYRPILEGFKTFTEEWERDRLTNGTNGINGSVQNGNGVCAMGENCCK 120
ME L GNLCRCTGYRPI+E K+F ++ NG G C + E K
Sbjct: 144 ME-TLGGNLCRCTGYRPIVESAKSFCPSSTCCQM------------NGEGKCCLDEE--K 188
Query: 121 NKKPGDXXXXXXLFSPSEFTPYDKSQEPTFPPEL-QLNDTYDKEYLQIRGPRATWYRPQT 179
N+ L+ EF P D +QE FPPEL ++ + L RG R TW P T
Sbjct: 189 NEPERKNSVCTKLYEKKEFQPLDPTQELIFPPELMRMAEESQNTVLTFRGERTTWIAPGT 248
Query: 180 LTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEENGVWIGG 239
L LLELK K P A LV+GN+ +G+ +KF YP++I P+ I EL + G+ +G
Sbjct: 249 LNDLLELKMKHPSAPLVIGNTYLGLHMKFTDVSYPIIISPARILELFVVTNTKQGLTLGT 308
Query: 240 ATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMTGSPISDM 299
SL ++ +LS+ + +LP K+++Y A+++ L AG QIRNVA++GG+I++ P SD+
Sbjct: 309 GLSLTQVKNVLSDVVSRLPKEKTQIYCALLKQLKTLAGQQIRNVASLGGHIISRLPTSDL 368
Query: 300 NPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAIYIPHTAETQYFKA 359
NPIL C L + S EG +++ ++ F I++P++VL ++++P +++ ++ A
Sbjct: 369 NPILGIGNCILNVAS-TEGIQQIPLNDHFLAGVPDAILKPEQVLISVFVPRSSKWEFVSA 427
Query: 360 YKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQMINKPW 419
++QA R+ + A VNA V + D + D +GG+ T + A K+ Q+I + W
Sbjct: 428 FRQAPRQQNAFATVNAGMKVVF--KEDTNTITDLGILYGGIGATVISADKSCRQLIGRCW 485
Query: 420 NQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYKFYIAVSVDTQVTPISSRDKS 479
++ +L+D + + ++ L +APGGM +YR++L +S + FY+ V + + +RD
Sbjct: 486 DEEMLDDAGKMICEEVSLLMAAPGGMEEYRKTLAISFLFMFYLDV-----LKQLKTRDP- 539
Query: 480 GAQTFHTLPTKSSQYFQVFRVKSGPGGSLIRDLADALPPSLTRLAPYFQVPSTQAKSDLV 539
H P S + + + D +P + + V Q D +
Sbjct: 540 -----HKYPDISQKLLHI-----------LEDFPLTMPYGMQS---FQDVDFQQPLQDPI 580
Query: 540 GRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVRG 599
GRPI+H S K ATGEA++CDD+ EL+LA V SSK HAKI+S+D S ALA GV
Sbjct: 581 GRPIMHQSGIKHATGEAVFCDDMSVLPGELFLAVVTSSKSHAKIISLDASEALASLGVVD 640
Query: 600 WVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYEE 659
V RDVPG ++ ++A+D V CVGQ + V A+ AQ+AA VK+ Y++
Sbjct: 641 VVTARDVPGDNGR-----EEESLYAQDEVICVGQIVCAVAADSYAHAQQAAKKVKIVYQD 695
Query: 660 L-PAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETNVS 718
+ P I ++Q+A++++SF E + +GNV+E F D ILEGEV +GGQEHFY+ET
Sbjct: 696 IEPMIVTVQDALQYESFIGPERKLE-QGNVEEAFQCADQILEGEVHLGGQEHFYMETQSV 754
Query: 719 VAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGK 770
VPK ED M+I+VSSQ + QEM A LG+P NRI KR+GG FGGK
Sbjct: 755 RVVPKGEDKEMDIYVSSQDAAFTQEMVARTLGIPKNRINCHVKRVGGAFGGK 806
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 789 WIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKER 848
++ ET VA +L N++ T + T +NQ + L +C+E E+ Y R
Sbjct: 926 FVTETCMSAVAAKCRLPPEKVRELNMYRTIDRTIHNQEFDPTNLLQCWEACVENSSYYNR 985
Query: 849 RKQCEEFNR 857
+K +EFN+
Sbjct: 986 KKAVDEFNQ 994
>pdb|3NVV|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVV|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVW|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVW|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVY|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVY|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
Length = 334
Score = 314 bits (804), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 158/334 (47%), Positives = 224/334 (67%), Gaps = 7/334 (2%)
Query: 133 LFSPSEFTPYDKSQEPTFPPEL-QLNDTYDKEYLQIRGPRATWYRPQTLTQLLELKAKFP 191
LF+P EF P D +QEP FPPEL +L D K+ L+ G R TW + TL +LL+LKA+ P
Sbjct: 1 LFNPEEFMPLDPTQEPIFPPELLRLKDVPPKQ-LRFEGERVTWIQASTLKELLDLKAQHP 59
Query: 192 EAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEENGVWIGGATSLNDMRAILS 251
EAKLVVGN+EIG+E+KFK +P++I P+ IPEL G+ G A +L+ + L
Sbjct: 60 EAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGISFGAACALSSVEKTLL 119
Query: 252 EQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMTGSPISDMNPILMAARCRLL 311
E + KLP+ K+ V+ ++E L WFAG Q+++VA++GGNI+T SPISD+NP+ MA+ +L
Sbjct: 120 EAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITASPISDLNPVFMASGTKLT 179
Query: 312 LESKAEGTRE-VTMDGSFYTSYRKNIVRPDEVLRAIYIPHTAETQYFKAYKQARRRDDDI 370
+ S+ GTR V MD +F+ SYRK ++ P+E+L +I IP++ E ++F A+KQA RR+DDI
Sbjct: 180 IVSR--GTRRTVPMDHTFFPSYRKTLLGPEEILLSIEIPYSREDEFFSAFKQASRREDDI 237
Query: 371 AIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQMINKPWNQSLLEDTWRN 430
A V V Q VK+ +GGMA T+ A KTT++ ++K WN+ LL+D
Sbjct: 238 AKVTCGMRVLF--QPGSMQVKELALCYGGMADRTISALKTTQKQLSKFWNEKLLQDVCAG 295
Query: 431 LMADLPLDHSAPGGMIQYRRSLTLSLFYKFYIAV 464
L +L L APGGMI++RR+LTLS F+KFY+ V
Sbjct: 296 LAEELSLSPDAPGGMIEFRRTLTLSFFFKFYLTV 329
>pdb|3B9J|B Chain B, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
pdb|3B9J|J Chain J, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
Length = 350
Score = 285 bits (730), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 140/301 (46%), Positives = 202/301 (67%), Gaps = 5/301 (1%)
Query: 165 LQIRGPRATWYRPQTLTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPE 224
L+ G R TW + TL +LL+LKA+ PEAKLVVGN+EIG+E+KFK +P++I P+ IPE
Sbjct: 8 LRFEGERVTWIQASTLKELLDLKAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPE 67
Query: 225 LTQPRVEENGVWIGGATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVA 284
L G+ G A +L+ + L E + KLP+ K+ V+ ++E L WFAG Q+++VA
Sbjct: 68 LNAVEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVA 127
Query: 285 AIGGNIMTGSPISDMNPILMAARCRLLLESKAEGTRE-VTMDGSFYTSYRKNIVRPDEVL 343
++GGNI+T SPISD+NP+ MA+ +L + S+ GTR V MD +F+ SYRK ++ P+E+L
Sbjct: 128 SLGGNIITASPISDLNPVFMASGTKLTIVSR--GTRRTVPMDHTFFPSYRKTLLGPEEIL 185
Query: 344 RAIYIPHTAETQYFKAYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPT 403
+I IP++ E ++F A+KQA RR+DDIA V V Q VK+ +GGMA
Sbjct: 186 LSIEIPYSREDEFFSAFKQASRREDDIAKVTCGMRVLF--QPGSMQVKELALCYGGMADR 243
Query: 404 TVLAKKTTEQMINKPWNQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYKFYIA 463
T+ A KTT++ ++K WN+ LL+D L +L L APGGMI++RR+LTLS F+KFY+
Sbjct: 244 TISALKTTQKQLSKFWNEKLLQDVCAGLAEELSLSPDAPGGMIEFRRTLTLSFFFKFYLT 303
Query: 464 V 464
V
Sbjct: 304 V 304
>pdb|1FIQ|B Chain B, Crystal Structure Of Xanthine Oxidase From Bovine Milk
Length = 350
Score = 285 bits (729), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 140/301 (46%), Positives = 202/301 (67%), Gaps = 5/301 (1%)
Query: 165 LQIRGPRATWYRPQTLTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPE 224
L+ G R TW + TL +LL+LKA+ PEAKLVVGN+EIG+E+KFK +P++I P+ IPE
Sbjct: 8 LRFEGERVTWIQASTLKELLDLKAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPE 67
Query: 225 LTQPRVEENGVWIGGATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVA 284
L G+ G A +L+ + L E + KLP+ K+ V+ ++E L WFAG Q+++VA
Sbjct: 68 LNAVEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVA 127
Query: 285 AIGGNIMTGSPISDMNPILMAARCRLLLESKAEGTRE-VTMDGSFYTSYRKNIVRPDEVL 343
++GGNI+T SPISD+NP+ MA+ +L + S+ GTR V MD +F+ SYRK ++ P+E+L
Sbjct: 128 SLGGNIITASPISDLNPVFMASGTKLTIVSR--GTRRTVPMDHTFFPSYRKTLLGPEEIL 185
Query: 344 RAIYIPHTAETQYFKAYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPT 403
+I IP++ E ++F A+KQA RR+DDIA V V Q VK+ +GGMA
Sbjct: 186 LSIEIPYSREDEFFSAFKQASRREDDIAKVTCGMRVLF--QPGSMQVKELALCYGGMADR 243
Query: 404 TVLAKKTTEQMINKPWNQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYKFYIA 463
T+ A KTT++ ++K WN+ LL+D L +L L APGGMI++RR+LTLS F+KFY+
Sbjct: 244 TISALKTTQKQLSKFWNEKLLQDVCAGLAEELSLSPDAPGGMIEFRRTLTLSFFFKFYLT 303
Query: 464 V 464
V
Sbjct: 304 V 304
>pdb|3ETR|B Chain B, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3ETR|M Chain M, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3EUB|B Chain B, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|K Chain K, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|T Chain T, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|3 Chain 3, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3NRZ|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NRZ|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NS1|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NS1|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NVZ|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3NVZ|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3SR6|B Chain B, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
pdb|3SR6|K Chain K, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
Length = 305
Score = 285 bits (729), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 140/301 (46%), Positives = 202/301 (67%), Gaps = 5/301 (1%)
Query: 165 LQIRGPRATWYRPQTLTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPE 224
L+ G R TW + TL +LL+LKA+ PEAKLVVGN+EIG+E+KFK +P++I P+ IPE
Sbjct: 4 LRFEGERVTWIQASTLKELLDLKAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPE 63
Query: 225 LTQPRVEENGVWIGGATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVA 284
L G+ G A +L+ + L E + KLP+ K+ V+ ++E L WFAG Q+++VA
Sbjct: 64 LNAVEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVA 123
Query: 285 AIGGNIMTGSPISDMNPILMAARCRLLLESKAEGTRE-VTMDGSFYTSYRKNIVRPDEVL 343
++GGNI+T SPISD+NP+ MA+ +L + S+ GTR V MD +F+ SYRK ++ P+E+L
Sbjct: 124 SLGGNIITASPISDLNPVFMASGTKLTIVSR--GTRRTVPMDHTFFPSYRKTLLGPEEIL 181
Query: 344 RAIYIPHTAETQYFKAYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPT 403
+I IP++ E ++F A+KQA RR+DDIA V V Q VK+ +GGMA
Sbjct: 182 LSIEIPYSREDEFFSAFKQASRREDDIAKVTCGMRVLF--QPGSMQVKELALCYGGMADR 239
Query: 404 TVLAKKTTEQMINKPWNQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYKFYIA 463
T+ A KTT++ ++K WN+ LL+D L +L L APGGMI++RR+LTLS F+KFY+
Sbjct: 240 TISALKTTQKQLSKFWNEKLLQDVCAGLAEELSLSPDAPGGMIEFRRTLTLSFFFKFYLT 299
Query: 464 V 464
V
Sbjct: 300 V 300
>pdb|3NRZ|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NRZ|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NVW|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVW|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVY|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVY|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
Length = 756
Score = 239 bits (611), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 168/235 (71%), Gaps = 3/235 (1%)
Query: 537 DLVGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEG 596
D VGRP+ H +A QA+GEA+YCDDIP+Y+ EL+L V S++ HAKI S+D S A + G
Sbjct: 1 DTVGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPG 60
Query: 597 VRGWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVT 656
++ D+PG G+ +D+ +FA+D VTCVG IG V+A+ A+RAA +VKVT
Sbjct: 61 FVCFLSADDIPGSNET--GLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVT 118
Query: 657 YEELPAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETN 716
YE+LPAI +I++AI++ SF+ E + +G++ + F + D+++ GE+ +GGQ+HFYLET+
Sbjct: 119 YEDLPAIITIEDAIKNNSFYGSELKIE-KGDLKKGFSEADNVVSGELYIGGQDHFYLETH 177
Query: 717 VSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKE 771
++A+PK E+G ME+FVS+Q+ + Q A LGVP NRI+ + KR+GGGFGGKE
Sbjct: 178 CTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKE 232
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 766 GFGGKEKLQSELYGLFTEVREDDWIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQ 825
GFGG + L +IAE VA L + N++ G+LTH+NQ
Sbjct: 343 GFGGPQAL---------------FIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQ 387
Query: 826 VLEHCTLGRCFEQVHESGKYKERRKQCEEFNR 857
LE ++ RC+++ +S +Y R+ + ++FN+
Sbjct: 388 RLEGFSVPRCWDECLKSSQYYARKSEVDKFNK 419
>pdb|3ETR|C Chain C, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3ETR|N Chain N, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3NS1|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NS1|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NVV|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVV|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVZ|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3NVZ|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
Length = 755
Score = 239 bits (611), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 168/235 (71%), Gaps = 3/235 (1%)
Query: 537 DLVGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEG 596
D VGRP+ H +A QA+GEA+YCDDIP+Y+ EL+L V S++ HAKI S+D S A + G
Sbjct: 1 DTVGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPG 60
Query: 597 VRGWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVT 656
++ D+PG G+ +D+ +FA+D VTCVG IG V+A+ A+RAA +VKVT
Sbjct: 61 FVCFLSADDIPGSNET--GLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVT 118
Query: 657 YEELPAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETN 716
YE+LPAI +I++AI++ SF+ E + +G++ + F + D+++ GE+ +GGQ+HFYLET+
Sbjct: 119 YEDLPAIITIEDAIKNNSFYGSELKIE-KGDLKKGFSEADNVVSGELYIGGQDHFYLETH 177
Query: 717 VSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKE 771
++A+PK E+G ME+FVS+Q+ + Q A LGVP NRI+ + KR+GGGFGGKE
Sbjct: 178 CTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKE 232
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 766 GFGGKEKLQSELYGLFTEVREDDWIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQ 825
GFGG + L +IAE VA L + N++ G+LTH+NQ
Sbjct: 343 GFGGPQAL---------------FIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQ 387
Query: 826 VLEHCTLGRCFEQVHESGKYKERRKQCEEFNR 857
LE ++ RC+++ +S +Y R+ + ++FN+
Sbjct: 388 RLEGFSVPRCWDECLKSSQYYARKSEVDKFNK 419
>pdb|3SR6|C Chain C, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
pdb|3SR6|L Chain L, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
Length = 745
Score = 239 bits (611), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 168/235 (71%), Gaps = 3/235 (1%)
Query: 537 DLVGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEG 596
D VGRP+ H +A QA+GEA+YCDDIP+Y+ EL+L V S++ HAKI S+D S A + G
Sbjct: 1 DTVGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPG 60
Query: 597 VRGWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVT 656
++ D+PG G+ +D+ +FA+D VTCVG IG V+A+ A+RAA +VKVT
Sbjct: 61 FVCFLSADDIPGSNET--GLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVT 118
Query: 657 YEELPAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETN 716
YE+LPAI +I++AI++ SF+ E + +G++ + F + D+++ GE+ +GGQ+HFYLET+
Sbjct: 119 YEDLPAIITIEDAIKNNSFYGSELKIE-KGDLKKGFSEADNVVSGELYIGGQDHFYLETH 177
Query: 717 VSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKE 771
++A+PK E+G ME+FVS+Q+ + Q A LGVP NRI+ + KR+GGGFGGKE
Sbjct: 178 CTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKE 232
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 766 GFGGKEKLQSELYGLFTEVREDDWIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQ 825
GFGG + L +IAE VA L + N++ G+LTH+NQ
Sbjct: 343 GFGGPQAL---------------FIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQ 387
Query: 826 VLEHCTLGRCFEQVHESGKYKERRKQCEEFNR 857
LE ++ RC+++ +S +Y R+ + ++FN+
Sbjct: 388 RLEGFSVPRCWDECLKSSQYYARKSEVDKFNK 419
>pdb|3EUB|C Chain C, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|L Chain L, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|U Chain U, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|4 Chain 4, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
Length = 762
Score = 239 bits (610), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 168/235 (71%), Gaps = 3/235 (1%)
Query: 537 DLVGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEG 596
D VGRP+ H +A QA+GEA+YCDDIP+Y+ EL+L V S++ HAKI S+D S A + G
Sbjct: 1 DTVGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPG 60
Query: 597 VRGWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVT 656
++ D+PG G+ +D+ +FA+D VTCVG IG V+A+ A+RAA +VKVT
Sbjct: 61 FVCFLSADDIPGSNET--GLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVT 118
Query: 657 YEELPAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETN 716
YE+LPAI +I++AI++ SF+ E + +G++ + F + D+++ GE+ +GGQ+HFYLET+
Sbjct: 119 YEDLPAIITIEDAIKNNSFYGSELKIE-KGDLKKGFSEADNVVSGELYIGGQDHFYLETH 177
Query: 717 VSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKE 771
++A+PK E+G ME+FVS+Q+ + Q A LGVP NRI+ + KR+GGGFGGKE
Sbjct: 178 CTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKE 232
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 766 GFGGKEKLQSELYGLFTEVREDDWIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQ 825
GFGG + L +IAE VA L + N++ G+LTH+NQ
Sbjct: 343 GFGGPQAL---------------FIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQ 387
Query: 826 VLEHCTLGRCFEQVHESGKYKERRKQCEEFNR 857
LE ++ RC+++ +S +Y R+ + ++FN+
Sbjct: 388 RLEGFSVPRCWDECLKSSQYYARKSEVDKFNK 419
>pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase From Bovine Milk
pdb|3B9J|C Chain C, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
pdb|3B9J|K Chain K, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
Length = 763
Score = 239 bits (610), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 168/235 (71%), Gaps = 3/235 (1%)
Query: 537 DLVGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEG 596
D VGRP+ H +A QA+GEA+YCDDIP+Y+ EL+L V S++ HAKI S+D S A + G
Sbjct: 2 DTVGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPG 61
Query: 597 VRGWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVT 656
++ D+PG G+ +D+ +FA+D VTCVG IG V+A+ A+RAA +VKVT
Sbjct: 62 FVCFLSADDIPGSNET--GLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVT 119
Query: 657 YEELPAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETN 716
YE+LPAI +I++AI++ SF+ E + +G++ + F + D+++ GE+ +GGQ+HFYLET+
Sbjct: 120 YEDLPAIITIEDAIKNNSFYGSELKIE-KGDLKKGFSEADNVVSGELYIGGQDHFYLETH 178
Query: 717 VSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKE 771
++A+PK E+G ME+FVS+Q+ + Q A LGVP NRI+ + KR+GGGFGGKE
Sbjct: 179 CTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKE 233
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 766 GFGGKEKLQSELYGLFTEVREDDWIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQ 825
GFGG + L +IAE VA L + N++ G+LTH+NQ
Sbjct: 344 GFGGPQAL---------------FIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQ 388
Query: 826 VLEHCTLGRCFEQVHESGKYKERRKQCEEFNR 857
LE ++ RC+++ +S +Y R+ + ++FN+
Sbjct: 389 RLEGFSVPRCWDECLKSSQYYARKSEVDKFNK 420
>pdb|1FIQ|A Chain A, Crystal Structure Of Xanthine Oxidase From Bovine Milk
pdb|3B9J|A Chain A, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
pdb|3B9J|I Chain I, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
Length = 219
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 100/154 (64%), Gaps = 17/154 (11%)
Query: 1 MHGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKD 60
+H +AVTTVEGIGSTKT+LHPVQER+AK+HGSQCGFCTPGIVMSMY LLR+ P +PT+++
Sbjct: 80 LHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQP-EPTVEE 138
Query: 61 MEVALQGNLCRCTGYRPILEGFKTFTEEWERDRLTNGTNGINGSVQNGNGVCAMGENCCK 120
+E A QGNLCRCTGYRPIL+GF+TF + +
Sbjct: 139 IEDAFQGNLCRCTGYRPILQGFRTFAKNGGCCGGNGNNPNCCMN---------------- 182
Query: 121 NKKPGDXXXXXXLFSPSEFTPYDKSQEPTFPPEL 154
KK LF+P EF P D +QEP FPPEL
Sbjct: 183 QKKDHTVTLSPSLFNPEEFMPLDPTQEPIFPPEL 216
>pdb|1JRO|A Chain A, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|C Chain C, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|E Chain E, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|G Chain G, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRP|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|C Chain C, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|E Chain E, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|G Chain G, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
Length = 462
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 132/438 (30%), Positives = 180/438 (41%), Gaps = 91/438 (20%)
Query: 1 MHGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKD 60
+ G A+ T+EGI + +LHPVQ+ + HGSQCGFCTPG ++SM A KD
Sbjct: 70 IAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVSMAA-----AHDRDRKD 124
Query: 61 MEVALQGNLCRCTGYRPILEGFKTFTEEWERDRLTNGTNGINGSVQNGNGVCAMGENCCK 120
+ L GNLCRCTGY PIL + E D L
Sbjct: 125 YDDLLAGNLCRCTGYAPILRAAEAAAGEPPADWL-------------------------- 158
Query: 121 NKKPGDXXXXXXLFSPSEFTPYDKSQ-EPTFPPELQLNDTYDKEYLQIRGPRATWYRPQT 179
F+ ++ + + Q P F PE T D A WY
Sbjct: 159 --------QADAAFTLAQLSSGVRGQTAPAFLPE-----TSDA--------LADWYLAH- 196
Query: 180 LTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEENGVWIGG 239
PEA L+ G +++ + V P + S +L Q R +G IG
Sbjct: 197 -----------PEATLIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQIRETPDGYGIGA 245
Query: 240 ATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMTGSPISDM 299
++ +RA + A+ +L FA Q+R VA IGGNI GSPI D
Sbjct: 246 GVTIAALRAFAEGP-----------HPALAGLLRRFASEQVRQVATIGGNIANGSPIGDG 294
Query: 300 NPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAIYIPHTAETQYFKA 359
P L+A L L E R D F+ YRK RP E + ++ +P +A +
Sbjct: 295 PPALIAMGASLTLRRGQERRRMPLED--FFLEYRKQDRRPGEFVESVTLPKSAPG--LRC 350
Query: 360 YKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQMINKPW 419
YK ++R D DI+ V N+TL G+ ++ AFGGMA A +I
Sbjct: 351 YKLSKRFDQDISAVCGCLNLTL----KGSKIETARIAFGGMAGVPKRAAAFEAALI---- 402
Query: 420 NQSLLEDTWRNLMADLPL 437
Q EDT + A LPL
Sbjct: 403 GQDFREDT---IAAALPL 417
>pdb|2W3R|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3S|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W54|A Chain A, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|C Chain C, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|E Chain E, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|G Chain G, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W55|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
Length = 462
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 132/438 (30%), Positives = 180/438 (41%), Gaps = 91/438 (20%)
Query: 1 MHGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKD 60
+ G A+ T+EGI + +LHPVQ+ + HGSQCGFCTPG ++SM A KD
Sbjct: 70 IAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVSMAA-----AHDRDRKD 124
Query: 61 MEVALQGNLCRCTGYRPILEGFKTFTEEWERDRLTNGTNGINGSVQNGNGVCAMGENCCK 120
+ L GNLCRCTGY PIL + E D L
Sbjct: 125 YDDLLAGNLCRCTGYAPILRAAEAAAGEPPADWL-------------------------- 158
Query: 121 NKKPGDXXXXXXLFSPSEFTPYDKSQ-EPTFPPELQLNDTYDKEYLQIRGPRATWYRPQT 179
F+ ++ + + Q P F PE T D A WY
Sbjct: 159 --------QADAAFTLAQLSSGVRGQTAPAFLPE-----TSDA--------LADWYLAH- 196
Query: 180 LTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEENGVWIGG 239
PEA L+ G +++ + V P + S +L Q R +G IG
Sbjct: 197 -----------PEATLIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQIRETPDGYGIGA 245
Query: 240 ATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMTGSPISDM 299
++ +RA + A+ +L FA Q+R VA IGGNI GSPI D
Sbjct: 246 GVTIAALRAFAEGP-----------HPALAGLLRRFASEQVRQVATIGGNIANGSPIGDG 294
Query: 300 NPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAIYIPHTAETQYFKA 359
P L+A L L E R D F+ YRK RP E + ++ +P +A +
Sbjct: 295 PPALIAMGASLTLRRGQERRRMPLED--FFLEYRKQDRRPGEFVESVTLPKSAPG--LRC 350
Query: 360 YKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQMINKPW 419
YK ++R D DI+ V N+TL G+ ++ AFGGMA A +I
Sbjct: 351 YKLSKRFDQDISAVCGCLNLTL----KGSKIETARIAFGGMAGVPKRAAAFEAALI---- 402
Query: 420 NQSLLEDTWRNLMADLPL 437
Q EDT + A LPL
Sbjct: 403 GQDFREDT---IAAALPL 417
>pdb|3EUB|A Chain A, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|J Chain J, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|S Chain S, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|2 Chain 2, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
Length = 165
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/87 (75%), Positives = 80/87 (91%), Gaps = 1/87 (1%)
Query: 1 MHGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKD 60
+H +AVTTVEGIGSTKT+LHPVQER+AK+HGSQCGFCTPGIVMSMY LLR+ P +PT+++
Sbjct: 80 LHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQP-EPTVEE 138
Query: 61 MEVALQGNLCRCTGYRPILEGFKTFTE 87
+E A QGNLCRCTGYRPIL+GF+TF +
Sbjct: 139 IEDAFQGNLCRCTGYRPILQGFRTFAK 165
>pdb|3ETR|A Chain A, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3ETR|L Chain L, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3NRZ|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NRZ|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NS1|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NS1|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NVV|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVV|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVW|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVW|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVY|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVY|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVZ|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3NVZ|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3SR6|A Chain A, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
pdb|3SR6|J Chain J, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
Length = 164
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/87 (75%), Positives = 80/87 (91%), Gaps = 1/87 (1%)
Query: 1 MHGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKD 60
+H +AVTTVEGIGSTKT+LHPVQER+AK+HGSQCGFCTPGIVMSMY LLR+ P +PT+++
Sbjct: 79 LHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQP-EPTVEE 137
Query: 61 MEVALQGNLCRCTGYRPILEGFKTFTE 87
+E A QGNLCRCTGYRPIL+GF+TF +
Sbjct: 138 IEDAFQGNLCRCTGYRPILQGFRTFAK 164
>pdb|1JRO|B Chain B, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|D Chain D, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|F Chain F, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|H Chain H, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRP|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|D Chain D, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|F Chain F, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|H Chain H, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|2W3R|B Chain B, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|D Chain D, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|F Chain F, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|H Chain H, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3S|B Chain B, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|D Chain D, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|F Chain F, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|H Chain H, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W54|B Chain B, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|D Chain D, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|F Chain F, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|H Chain H, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
Length = 777
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 127/239 (53%), Gaps = 3/239 (1%)
Query: 539 VGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVR 598
VG+P+ H SA TG+A Y DD+P L+LAF +S++ A I +D GV
Sbjct: 3 VGKPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVI 62
Query: 599 GWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYE 658
D+P N + + A V VGQPI V A A+ AA ++TY
Sbjct: 63 AVFTAADLP-HDNDASPAPSPEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARITYA 121
Query: 659 ELPAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETNVS 718
PAI ++ +A+ S F P ++ RG+V+ H+ EG +GGQEHFYLE +
Sbjct: 122 PRPAILTLDQALAADSRFEGGPVIWARGDVETALAGAAHLAEGCFEIGGQEHFYLEGQAA 181
Query: 719 VAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKEKLQSEL 777
+A+P +G + I SSQHPSEIQ AHALG+ + + + +R+GGGFGGKE + L
Sbjct: 182 LALPA--EGGVVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKESQGNHL 238
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 21/123 (17%)
Query: 748 ALGVPSNRIVAKTKRLGG--GFGGKEKLQSELYGLFTEVREDDWIAETMGHHVAQFLKLD 805
AL + S+R+ T+ GFGG + G R + +A MG A+ L+
Sbjct: 323 ALRIESHRLRTNTQSNTAFRGFGGPQ-------GALGMERAIEHLARGMGRDPAELRALN 375
Query: 806 YADFA-RSNLFV-----------TGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCE 853
+ D R L THY Q + C LG ++ +S + RR +
Sbjct: 376 FYDPPERGGLSAPPSPPEPIATKKTQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIA 435
Query: 854 EFN 856
+N
Sbjct: 436 AWN 438
>pdb|2W55|B Chain B, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|D Chain D, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|F Chain F, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|H Chain H, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
Length = 777
Score = 126 bits (316), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 117/225 (52%), Gaps = 3/225 (1%)
Query: 539 VGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVR 598
VG+P+ H SA TG+A Y DD+P L+LAF +S++ A I +D GV
Sbjct: 3 VGKPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVI 62
Query: 599 GWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYE 658
D+P N + + A V VGQPI V A A+ AA ++TY
Sbjct: 63 AVFTAADLP-HDNDASPAPSPEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARITYA 121
Query: 659 ELPAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETNVS 718
PAI ++ +A+ S F P ++ RG+V+ H+ EG +GGQEHFYLE +
Sbjct: 122 PRPAILTLDQALAADSRFEGGPVIWARGDVETALAGAAHLAEGCFEIGGQEHFYLEGQAA 181
Query: 719 VAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRL 763
+A+P +G + I SSQHPSEIQ AHALG+ + + + +R+
Sbjct: 182 LALPA--EGGVVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRM 224
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 21/123 (17%)
Query: 748 ALGVPSNRIVAKTKRLGG--GFGGKEKLQSELYGLFTEVREDDWIAETMGHHVAQFLKLD 805
AL + S+R+ T+ GFGG + G R + +A MG A+ L+
Sbjct: 323 ALRIESHRLRTNTQSNTAFRGFGGPQ-------GALGMERAIEHLARGMGRDPAELRALN 375
Query: 806 YADFA-RSNLFV-----------TGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCE 853
+ D R L THY Q + C LG ++ +S + RR +
Sbjct: 376 FYDPPERGGLSAPPSPPEPIATKKTQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIA 435
Query: 854 EFN 856
+N
Sbjct: 436 AWN 438
>pdb|3HRD|A Chain A, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|E Chain E, Crystal Structure Of Nicotinate Dehydrogenase
Length = 425
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 122/252 (48%), Gaps = 19/252 (7%)
Query: 538 LVGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGV 597
++G+ V + ++ G A + D + LY S+ PHA+I+S+D S A A++GV
Sbjct: 7 VLGKNKVKVDSLEKVMGTAKFAADY-SFPDMLYAGVFRSTVPHARIVSLDLSKARAIDGV 65
Query: 598 RGWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTY 657
+D +PG KN G II D+ D V G I V A+ + Q A + + Y
Sbjct: 66 EAVLDYHAIPG-KNRFGIIIKDEPCLVDDKVRRYGDAIAVVAAQTPDLVQEALDAITIEY 124
Query: 658 EELPAIFSIQEAIEHKSFFNLEPSVYGR-----------GNVDEEFLKVDHILEGEVSVG 706
EEL IF+++ A+E S P+++G G+VD F + D ++E S
Sbjct: 125 EELEGIFTMERALEEDS-----PAIHGDTNIHQVKHLEYGDVDAAFKQCDIVVEDTYSTH 179
Query: 707 GQEHFYLETNVSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGG 766
H ++E + V+ E G + + VS+Q+P + A L +P++++ GGG
Sbjct: 180 RLTHMFIEPDAGVSYYDNE-GMLTVVVSTQNPHYDRGEVAGMLALPNSKVRIIQATTGGG 238
Query: 767 FGGKEKLQSELY 778
FGGK L + +
Sbjct: 239 FGGKLDLSVQCH 250
>pdb|1RM6|A Chain A, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1RM6|D Chain D, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|A Chain A, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|D Chain D, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
Length = 769
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 111/237 (46%), Gaps = 11/237 (4%)
Query: 550 KQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVRGWVDERDVPGQ 609
++ TG+A Y DI L + S HA+IL++D SAA A+EGV + P
Sbjct: 22 EKVTGKAKYTADIAAPDA-LVGRILRSPHAHARILAIDTSAAEALEGVIAVCTGAETPVP 80
Query: 610 KNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYEELPAIFSIQEA 669
+ I ++ ARD V G P+ V A D++ A++A AL+KV YE LPA + + A
Sbjct: 81 FGVLP-IAENEYPLARDKVRYRGDPVAAVAAIDEVTAEKALALIKVDYEVLPAYMTPKAA 139
Query: 670 IEHKSFF-------NLEPSVYGR-GNVDEEFLKVDHILEGEVSVGGQEHFYLETNVSVAV 721
++ + N+ V+ G+V F + D I E + H ++E N ++A
Sbjct: 140 MKAGAIALHDDKPNNILREVHAEFGDVAAAFAEADLIREKTYTFAEVNHVHMELNATLAE 199
Query: 722 PKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGK-EKLQSEL 777
+ + ++Q P + A L + S RI LGGGFG + E L E+
Sbjct: 200 YDPVRDMLTLNTTTQVPYYVHLKVAACLQMDSARIRVIKPFLGGGFGARTEALHFEI 256
>pdb|1FFU|A Chain A, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFU|D Chain D, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFV|A Chain A, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
pdb|1FFV|D Chain D, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
Length = 163
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 3 GLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDME 62
G V TVEG+ + K LH VQE K HG QCGFCTPG++M Y L+ P PT ++
Sbjct: 71 GSEVLTVEGL-ANKGVLHAVQEGFYKEHGLQCGFCTPGMLMRAYRFLQENP-NPTEAEIR 128
Query: 63 VALQGNLCRCTGYRPILEGFK 83
+ + GNLCRCTGY+ I++ +
Sbjct: 129 MGMTGNLCRCTGYQNIVKAVQ 149
>pdb|1N5W|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N5W|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N60|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N60|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N61|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N61|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N62|A Chain A, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N62|D Chain D, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N63|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
pdb|1N63|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
pdb|1ZXI|A Chain A, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
pdb|1ZXI|D Chain D, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
Length = 166
Score = 77.4 bits (189), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 2 HGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDM 61
+G ++TT+EG+ + L +QE HG QCG+CTPG++M + LL+ P PT ++
Sbjct: 70 NGASITTIEGMAAPDGTLSALQEGFRMMHGLQCGYCTPGMIMRSHRLLQENP-SPTEAEI 128
Query: 62 EVALQGNLCRCTGYRPILEGFK 83
+ GNLCRCTGY+ I++ +
Sbjct: 129 RFGIGGNLCRCTGYQNIVKAIQ 150
>pdb|1T3Q|B Chain B, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|E Chain E, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 788
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 119/262 (45%), Gaps = 27/262 (10%)
Query: 535 KSDLVGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAM 594
K +G ++ + TG Y D+ L++A + S HA+I+S+D + A A+
Sbjct: 10 KKKSIGTSVLRREDTRLLTGRGRYIADL-VLSGMLHVASLRSPFAHARIVSIDVADAQAL 68
Query: 595 EGV-------------RGWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAE 641
GV +G V V G + + + A V VG+ + V+A
Sbjct: 69 PGVELVWCGADVAELSQGIVATMQVEGFQTTI------QPLLANGVTRFVGEIVAVVVAS 122
Query: 642 DQLIAQRAAALVKVTYEELPAIFSIQEAIEHKSFFN--LEPSVYGRGNVDEE-----FLK 694
+ IA+ AA L++V YEELPA+ I+ A+E ++ N L +V R + + F
Sbjct: 123 SRAIAEDAAQLIQVEYEELPAVTGIEAALEGEARANDTLAGNVVSRTSRARDELAPIFAS 182
Query: 695 VDHILEGEVSVGGQEHFYLETNVSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSN 754
++ G+ S G +ET +VA + + ++ ++Q PS ++ M A +P +
Sbjct: 183 SAGVVRGQFSCGRVSACPMETRGAVAQYEWTTQQLILWTATQMPSFVRTMVAMFCAIPEH 242
Query: 755 RIVAKTKRLGGGFGGKEKLQSE 776
I + +GGGFG K L E
Sbjct: 243 LIEVRVPDVGGGFGQKAHLHPE 264
>pdb|1RM6|C Chain C, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1RM6|F Chain F, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|C Chain C, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|F Chain F, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
Length = 161
Score = 75.1 bits (183), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 3 GLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDME 62
G V TVE + +T+ L +Q + G+QCGFCTPG++M+ ALLR P P+ +++
Sbjct: 70 GKKVETVESL-ATQGTLSKLQAAFHEKLGTQCGFCTPGMIMASEALLRKNP-SPSRDEIK 127
Query: 63 VALQGNLCRCTGYRPILEGFKT 84
AL GNLCRCTGY I++ +T
Sbjct: 128 AALAGNLCRCTGYVKIIKSVET 149
>pdb|3HRD|C Chain C, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|G Chain G, Crystal Structure Of Nicotinate Dehydrogenase
Length = 296
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 127/298 (42%), Gaps = 24/298 (8%)
Query: 174 WYRPQTLTQ---LLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRV 230
++ P+TL + LL P A ++ G +++ +E+ + V+I + EL RV
Sbjct: 6 FFAPKTLEEAKGLLHQYKDVPPA-IIAGGTDLVIEINDRWEKPDVVIDIKKLKELEYIRV 64
Query: 231 EENGVWIGGATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNI 290
EEN + IG ++ QIE P +S V A+ + QIRN+ IGGN+
Sbjct: 65 EENTIHIGALSTFT--------QIENHPFIRSHVR-ALYKAASQVGSPQIRNLGTIGGNL 115
Query: 291 MTGSPISDMNPILMAARCRLLLESKAEGTREVTM----DGSFYTSYRKNIVRPDEVLRAI 346
T S D + ++LES GTR++ + DG + R+N + DE++ +
Sbjct: 116 STSSVAGDGVSAMTTLDATVVLES-VRGTRQMKLTDFFDGEGFK--RRNALEADEIMTEV 172
Query: 347 YIPHTAETQYFKAYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVL 406
I YK A+R+ I+++ V +D D V G + +
Sbjct: 173 IIDRPDAHSASAFYKLAKRKSLAISVIGGGMAVKVD---DAGVCTWASMRGGCIGRYPLH 229
Query: 407 AKKTTEQMINKPWNQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYKFYIAV 464
K+ E ++ P +E T ++ D D + + Y++ +F K ++ +
Sbjct: 230 FKQAEEMLVGAPLTMETMEATL-PILHDTVYDMARARPSVLYKKESVQGVFKKLFVDI 286
>pdb|1FFV|C Chain C, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
pdb|1FFV|F Chain F, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
Length = 287
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 110/237 (46%), Gaps = 21/237 (8%)
Query: 170 PRATWYRPQTLTQLLELKAKF-PEAKLVVGNSEIGVEVKFKKFFYPV-LIQPSLIPELTQ 227
PR ++ P+++ + + L + +AKL+ G + +K + F P LI + IPEL
Sbjct: 4 PRFEYHAPKSVGEAVALLGQLGSDAKLLAGGHSLLPMMKLR-FAQPEHLIDINRIPELRG 62
Query: 228 PRVEENGVWIGGATSLNDMRAILSEQIE-KLPSHKSRVYVAIVEMLHWFAGNQIRNVAAI 286
R E + V IG T ND+ I S ++ +LP + E A Q+RN I
Sbjct: 63 IREEGSTVVIGAMTVENDL--ISSPIVQARLP--------LLAEAAKLIADPQVRNRGTI 112
Query: 287 GGNIMTGSPISDMNPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAI 346
GG+I G P +D + +A +LE G R V DG F +Y ++ +EV+ I
Sbjct: 113 GGDIAHGDPGNDHPALSIAVEAHFVLEGP-NGRRTVPADGFFLGTY-MTLLEENEVMVEI 170
Query: 347 YIPHTAETQYFKAYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPT 403
+P A+ + AY++ +R+ D A A + ++ G V A +APT
Sbjct: 171 RVPAFAQGTGW-AYEKLKRKTGDWATAGCA----VVMRKSGNTVSHIRIALTNVAPT 222
>pdb|1FFU|C Chain C, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFU|F Chain F, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
Length = 287
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 109/237 (45%), Gaps = 21/237 (8%)
Query: 170 PRATWYRPQTLTQLLELKAKF-PEAKLVVGNSEIGVEVKFKKFFYPV-LIQPSLIPELTQ 227
PR ++ P+++ + + L + +AKL+ G + +K + F P LI + IPEL
Sbjct: 4 PRFEYHAPKSVGEAVALLGQLGSDAKLLAGGHSLLPMMKLR-FAQPEHLIDINRIPELRG 62
Query: 228 PRVEENGVWIGGATSLNDMRAILSEQIE-KLPSHKSRVYVAIVEMLHWFAGNQIRNVAAI 286
R E + V IG T ND+ I S ++ +LP + E A Q+RN I
Sbjct: 63 IREEGSTVVIGAMTVENDL--ISSPIVQARLP--------LLAEAAKLIADPQVRNRGTI 112
Query: 287 GGNIMTGSPISDMNPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAI 346
GG+I G P +D + +A +LE G R V DG F +Y ++ +EV+ I
Sbjct: 113 GGDIAHGDPGNDHPALSIAVEAHFVLEGP-NGRRTVPADGFFLGTY-MTLLEENEVMVEI 170
Query: 347 YIPHTAETQYFKAYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPT 403
+P A + AY++ +R+ D A A + ++ G V A +APT
Sbjct: 171 RVPAFAAGTGW-AYEKLKRKTGDWATAGCA----VVMRKSGGTVSHIRIALTNVAPT 222
>pdb|1SIJ|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
pdb|1VLB|A Chain A, Structure Refinement Of The Aldehyde Oxidoreductase From
Desulfovibrio Gigas At 1.28 A
pdb|3FAH|A Chain A, Glycerol Inhibited Form Of Aldehyde Oxidoreductase From
Desulfovibrio Gigas
pdb|3FC4|A Chain A, Ethylene Glycol Inhibited Form Of Aldehyde Oxidoreductase
From Desulfovibrio Gigas
pdb|3L4P|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
Length = 907
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 3 GLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDME 62
G +TT+EG+G + LHP+Q+ G+QCGFC+PG ++S LL + P+ +D+
Sbjct: 70 GAQITTIEGVGQPE-NLHPLQKAWVLHGGAQCGFCSPGFIVSAKGLLDT-NADPSREDVR 127
Query: 63 VALQG--NLCRCTGYRPILE 80
Q N CRCTGY+P+++
Sbjct: 128 DWFQKHRNACRCTGYKPLVD 147
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 97/226 (42%), Gaps = 21/226 (9%)
Query: 569 LYLAFVVSSKPHAKILSVDPSAALAMEGVRGWVDERDVPGQKNYVGGIIH---------D 619
L+LA V + HA I +D S AL M GV + +DV G KN + G+I D
Sbjct: 208 LHLAMVQAKVSHANIKGIDTSEALTMPGVHSVITHKDVKG-KNRITGLITFPTNKGDGWD 266
Query: 620 DVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYEELPAIFS------IQEAIEHK 673
I + V G I V A+ + A+ AA VKV EELPA S H
Sbjct: 267 RPILCDEKVFQYGDCIALVCADSEANARAAAEKVKVDLEELPAYMSGPAAAAEDAIEIHP 326
Query: 674 SFFNL---EPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETNVSVAVPKLEDGCME 730
N+ +P V G + F D +EG+ VG Q H +E +V+ A +DG
Sbjct: 327 GTPNVYFEQPIVKGE-DTGPIFASADVTVEGDFYVGRQPHMPIEPDVAFAYMG-DDGKCY 384
Query: 731 IFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKEKLQSE 776
I S M A +G+ +++V +GG FG K SE
Sbjct: 385 IHSKSIGVHLHLYMIAPGVGLEPDQLVLVANPMGGTFGYKFSPTSE 430
>pdb|1DGJ|A Chain A, Crystal Structure Of The Aldehyde Oxidoreductase From
Desulfovibrio Desulfuricans Atcc 27774
Length = 907
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 4/78 (5%)
Query: 5 AVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDMEVA 64
+VTT+EGIG+ LHP+Q + +QCGFCTPG ++S ALL P+ +D+
Sbjct: 72 SVTTLEGIGAPDC-LHPLQHAWIQHGAAQCGFCTPGFIVSAKALLDENVA-PSREDVRDW 129
Query: 65 LQG--NLCRCTGYRPILE 80
Q N+CRCTGY+P+++
Sbjct: 130 FQKHHNICRCTGYKPLVD 147
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 65/155 (41%), Gaps = 15/155 (9%)
Query: 527 FQVPSTQAKSDLVGRPIVHASAFKQATGEAIYCDDIPKYQTE--LYLAFVVSSKPHAKIL 584
F++P A + G I SA + TG A + D E L+LA + HA I
Sbjct: 167 FKMP---ADGRIWGSSIPRPSAVAKVTGLAEFGADAALRMPENTLHLALAQAKVSHALIK 223
Query: 585 SVDPSAALAMEGVRGWVDERDVPGQKNYVGGIIH---------DDVIFARDVVTCVGQPI 635
+D S A M GV + +DV G KN + G+I + I + G +
Sbjct: 224 GIDTSEAEKMPGVYKVLTHKDVKG-KNRITGLITFPTNKGDGWERPILNDSKIFQYGDAL 282
Query: 636 GGVIAEDQLIAQRAAALVKVTYEELPAIFSIQEAI 670
V A+ + A+ AA VK E LP S EA+
Sbjct: 283 AIVCADSEANARAAAEKVKFDLELLPEYMSAPEAM 317
>pdb|1T3Q|A Chain A, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|D Chain D, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 168
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 3 GLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDME 62
G ++ TVEG+ S KL+ +Q+ + H QCGFCT G++ + ++L P P+ ++
Sbjct: 77 GCSIETVEGL-SQGEKLNALQDSFRRHHALQCGFCTAGMLATARSILAENPA-PSRDEVR 134
Query: 63 VALQGNLCRCTGYRPILEG 81
+ GNLCRCTGY I++
Sbjct: 135 EVMSGNLCRCTGYETIIDA 153
>pdb|1ZXI|B Chain B, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
pdb|1ZXI|E Chain E, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
Length = 809
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 104/242 (42%), Gaps = 28/242 (11%)
Query: 554 GEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVRGWVDERDV-PGQKNY 612
G+ Y DD+ K L+ FV SS HA+I S+D S A A+ GV + D+ P +Y
Sbjct: 36 GKGNYVDDV-KLPGMLFGDFVRSSHAHARIKSIDTSKAKALPGVFAVLTAADLKPLNLHY 94
Query: 613 VGGIIHD-DVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYEELPAIFSIQEAIE 671
+ + D + A + V Q + V+A+D+ +A A LV+V YE LP + +A+E
Sbjct: 95 MPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVLVDPFKAME 154
Query: 672 -----------------------HKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQ 708
H F E + + D F K + + + +
Sbjct: 155 PDAPLLREDIKDKMTGAHGARKHHNHIFRWE--IGDKEGTDATFAKAEVVSKDMFTYHRV 212
Query: 709 EHFYLETNVSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFG 768
LET VA G + ++ + Q P I+ + + G+P ++I +GGGFG
Sbjct: 213 HPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFG 272
Query: 769 GK 770
K
Sbjct: 273 NK 274
>pdb|1N5W|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N5W|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N60|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N60|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N61|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N61|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N62|B Chain B, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N62|E Chain E, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N63|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
pdb|1N63|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
Length = 809
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 104/242 (42%), Gaps = 28/242 (11%)
Query: 554 GEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVRGWVDERDV-PGQKNY 612
G+ Y DD+ K L+ FV SS HA+I S+D S A A+ GV + D+ P +Y
Sbjct: 36 GKGNYVDDV-KLPGMLFGDFVRSSHAHARIKSIDTSKAKALPGVFAVLTAADLKPLNLHY 94
Query: 613 VGGIIHD-DVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYEELPAIFSIQEAIE 671
+ + D + A + V Q + V+A+D+ +A A LV+V YE LP + +A+E
Sbjct: 95 MPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVLVDPFKAME 154
Query: 672 -----------------------HKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQ 708
H F E + + D F K + + + +
Sbjct: 155 PDAPLLREDIKDKMTGAHGARKHHNHIFRWE--IGDKEGTDATFAKAEVVSKDMFTYHRV 212
Query: 709 EHFYLETNVSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFG 768
LET VA G + ++ + Q P I+ + + G+P ++I +GGGFG
Sbjct: 213 HPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFG 272
Query: 769 GK 770
K
Sbjct: 273 NK 274
>pdb|3HRD|D Chain D, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|H Chain H, Crystal Structure Of Nicotinate Dehydrogenase
Length = 160
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 6 VTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDMEVAL 65
+ T+EG+ + K +Q+ +A QCG+CTPG++++ ALL P PT +++ VA+
Sbjct: 74 IITLEGV-AEDGKPSLLQQCFLEAGAVQCGYCTPGMILTAKALLDKNP-DPTDEEITVAM 131
Query: 66 QGNLCRCTGYRPI 78
GNLCRCTGY I
Sbjct: 132 SGNLCRCTGYIKI 144
>pdb|1FFU|B Chain B, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFU|E Chain E, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFV|B Chain B, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
pdb|1FFV|E Chain E, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
Length = 803
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 103/242 (42%), Gaps = 28/242 (11%)
Query: 554 GEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVRGWVDERDVPGQKNYV 613
G+ Y DDI K L++ V + H +I + AALAM GV + D+ K +
Sbjct: 33 GKGNYVDDI-KMPGMLHMDIVRAPIAHGRIKKIHKDAALAMPGVHAVLTAEDLKPLKLHW 91
Query: 614 GGIIHDDV--IFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYEELPAIFS------ 665
+ DV + A + V Q + VIA+D+ IA A VKV Y+ELP +
Sbjct: 92 MPTLAGDVAAVLADEKVHFQMQEVAIVIADDRYIAADAVEAVKVEYDELPVVIDPIDALK 151
Query: 666 -----IQEAIEHKSFFNLEP-----SVYGRGNVDEEFLKVDHILEGEVSVGGQEHFY--- 712
++E + K+ P ++ G D+ D + Q +Y
Sbjct: 152 PDAPVLREDLAGKTSGAHGPREHHNHIFTWGAGDKA--ATDAVFANAPVTVSQHMYYPRV 209
Query: 713 ----LETNVSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFG 768
LET VA G + +++SQ P ++ + + G+P +++ + +GGGFG
Sbjct: 210 HPCPLETCGCVASFDPIKGDLTTYITSQAPHVVRTVVSMLSGIPESKVRIVSPDIGGGFG 269
Query: 769 GK 770
K
Sbjct: 270 NK 271
>pdb|1N5W|C Chain C, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N5W|F Chain F, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N60|C Chain C, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N60|F Chain F, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N61|C Chain C, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N61|F Chain F, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N62|C Chain C, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N62|F Chain F, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N63|C Chain C, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
pdb|1N63|F Chain F, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
Length = 288
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 89/202 (44%), Gaps = 23/202 (11%)
Query: 174 WYRPQTLTQLLELKAKFPE-AKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEE 232
++RP+++ + L K E A+ + G + +K + L+ I +L R E
Sbjct: 8 YHRPKSIADAVALLTKLGEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGIREEG 67
Query: 233 NGVWIGGATSLNDMRAILSEQIE-KLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIM 291
V IG T+ + + I S+ + KLP I E A QIR + IGGN
Sbjct: 68 TDVVIGAMTTQHAL--IGSDFLAAKLP--------IIRETSLLIADPQIRYMGTIGGNAA 117
Query: 292 TGSPISDMNPILMAARCRLLLESKAEGTREVTM----DGSFYTSYRKNIVRPDEVLRAIY 347
G P +DM P LM + EG R V G+++T+ + P E+L AI
Sbjct: 118 NGDPGNDM-PALMQCLGAAYELTGPEGARIVAARDYYQGAYFTA-----IEPGELLTAIR 171
Query: 348 IPHTAETQYFKAYKQARRRDDD 369
IP T + AY++ +R+ D
Sbjct: 172 IP-VPPTGHGYAYEKLKRKIGD 192
>pdb|1ZXI|C Chain C, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
pdb|1ZXI|F Chain F, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
Length = 288
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 89/202 (44%), Gaps = 23/202 (11%)
Query: 174 WYRPQTLTQLLELKAKFPE-AKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEE 232
++RP+++ + L K E A+ + G + +K + L+ I +L R E
Sbjct: 8 YHRPKSIADAVALLTKLGEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGIREEG 67
Query: 233 NGVWIGGATSLNDMRAILSEQIE-KLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIM 291
V IG T+ + + I S+ + KLP I E A QIR + IGGN
Sbjct: 68 TDVVIGAMTTQHAL--IGSDFLAAKLP--------IIRETSLLIADPQIRYMGTIGGNAA 117
Query: 292 TGSPISDMNPILMAARCRLLLESKAEGTREVTM----DGSFYTSYRKNIVRPDEVLRAIY 347
G P +DM P LM + EG R V G+++T+ + P E+L AI
Sbjct: 118 NGDPGNDM-PALMQCLGAAYELTGPEGARIVAARDYYQGAYFTA-----IEPGELLTAIR 171
Query: 348 IPHTAETQYFKAYKQARRRDDD 369
IP T + AY++ +R+ D
Sbjct: 172 IP-VPPTGHGYAYEKLKRKIGD 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,094,935
Number of Sequences: 62578
Number of extensions: 1108081
Number of successful extensions: 2320
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2133
Number of HSP's gapped (non-prelim): 71
length of query: 857
length of database: 14,973,337
effective HSP length: 107
effective length of query: 750
effective length of database: 8,277,491
effective search space: 6208118250
effective search space used: 6208118250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)