RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14046
(857 letters)
>gnl|CDD|215491 PLN02906, PLN02906, xanthine dehydrogenase.
Length = 1319
Score = 790 bits (2041), Expect = 0.0
Identities = 343/781 (43%), Positives = 469/781 (60%), Gaps = 49/781 (6%)
Query: 1 MHGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKD 60
+ G+ V TVEGIG+ + LHPVQE LA HGSQCGFCTPG +MSMYALLRS PT +
Sbjct: 57 VEGMHVITVEGIGNRRDGLHPVQEALASMHGSQCGFCTPGFIMSMYALLRSSKTPPTEEQ 116
Query: 61 MEVALQGNLCRCTGYRPILEGFKTFTEEWERDRLTNGTNGINGSVQNGNGVC---AMGEN 117
+E L GNLCRCTGYRPIL+ F+ F + D L G + ++ Q+G +C +
Sbjct: 117 IEECLAGNLCRCTGYRPILDAFRVFAKT--DDALYTGVSSLSL--QDGEPICPSTGKPCS 172
Query: 118 CCKNKKPGDEEEKEELFSPSEFTPYDKS----QEPTFPPELQLNDTYDKEYLQIRG-PRA 172
C K + F P ++ D S +E FPPEL L L++ G
Sbjct: 173 CGSKTTSAAGTCKSDRFQPISYSEIDGSWYTEKELIFPPELLLRKLTP---LKLLGNGGL 229
Query: 173 TWYRPQTLTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEE 232
TWYRP +L LLELKA++P+AKLVVGN+E+G+E++FK YPVLI P+ +PEL +V++
Sbjct: 230 TWYRPTSLQHLLELKAEYPDAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKD 289
Query: 233 NGVWIGGATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMT 292
+G+ IG A L++++ + + +++ P+H++ A +E L WFAG QIRNVA+IGGNI T
Sbjct: 290 DGLEIGAAVRLSELQNLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICT 349
Query: 293 GSPISDMNPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAIYIPHTA 352
SPISD+NP+ MAA ++ S R V F+ YRK ++PDE+L ++++P T
Sbjct: 350 ASPISDLNPLWMAAGATFVIISCDGDIRSV-PASDFFLGYRKVDLKPDEILLSVFLPWTR 408
Query: 353 ETQYFKAYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTE 412
+Y K +KQA RRDDDIAIVNA V L+ + +V D A+GG+AP +V A+KT E
Sbjct: 409 PFEYVKEFKQAHRRDDDIAIVNAGMRVKLEEKDGEWIVSDASIAYGGVAPLSVSARKTEE 468
Query: 413 QMINKPWNQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYKFYIAVSVDTQVTP 472
+I KPWN+ L+D + L D+ + APGGM+++R+SL LS F+KF++ VS +
Sbjct: 469 FLIGKPWNKETLQDALKVLQKDILIKEDAPGGMVEFRKSLALSFFFKFFLWVSHQLEA-- 526
Query: 473 ISSRDKSGAQTFHTLPTKSSQYFQVFRVKSGPGGSLIRDLADALPPSLTRLAPYFQVPST 532
D S +TF ++Q F P S+ Q T
Sbjct: 527 ----DGSTIETFPESHLSAAQPFP-------------------RPSSVGM-----QDYET 558
Query: 533 QAKSDLVGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAAL 592
+ VG+P VH SA Q TGEA Y DDIP L+ A V+S+KPHA+ILS+D S A
Sbjct: 559 VKQGTAVGQPEVHLSAELQVTGEAEYADDIPMPPNTLHAALVLSTKPHARILSIDDSEAK 618
Query: 593 AMEGVRGWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAAL 652
+ G G +DVPG N +G ++HD+ +FA DVVTCVGQ IG V+A+ Q A+ AA
Sbjct: 619 SSPGFAGIFLAKDVPGD-NMIGPVVHDEELFATDVVTCVGQVIGVVVADTQENAKAAARK 677
Query: 653 VKVTYEELPAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFL--KVDHILEGEVSVGGQEH 710
VKV YEELPAI SI+EAIE SF +G+V+ F + D I+EGEV +GGQEH
Sbjct: 678 VKVEYEELPAILSIEEAIEAGSFHPNTERRLEKGDVELCFASGQCDRIIEGEVQMGGQEH 737
Query: 711 FYLETNVSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGK 770
FYLE N S+ + + S+Q P + Q+ AH LG+P +++V KTKR+GGGFGGK
Sbjct: 738 FYLEPNSSLVWTSDSGNEVHMISSTQAPQKHQKYVAHVLGLPMSKVVCKTKRIGGGFGGK 797
Query: 771 E 771
E
Sbjct: 798 E 798
Score = 54.7 bits (132), Expect = 2e-07
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 15/91 (16%)
Query: 766 GFGGKEKLQSELYGLFTEVREDDWIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQ 825
GFGG + + L TE +WI +A L + N G++THY Q
Sbjct: 909 GFGGPQGM------LITE----NWI-----QRIAVELNKSPEEIREMNFQGEGSVTHYGQ 953
Query: 826 VLEHCTLGRCFEQVHESGKYKERRKQCEEFN 856
VL+HCTL + ++++ S + +RR++ +EFN
Sbjct: 954 VLQHCTLPQLWDELKVSCDFLKRREEVDEFN 984
>gnl|CDD|132014 TIGR02969, mam_aldehyde_ox, aldehyde oxidase. Members of this
family are mammalian aldehyde oxidase (EC 1.2.3.1)
isozymes, closely related to xanthine
dehydrogenase/oxidase.
Length = 1330
Score = 600 bits (1548), Expect = 0.0
Identities = 318/778 (40%), Positives = 471/778 (60%), Gaps = 60/778 (7%)
Query: 1 MHGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKD 60
++G AVTTVEGIGST+T+LHPVQER+AK HG+QCGFCTPG+VMSMYALLR+ P +PT+
Sbjct: 77 LYGAAVTTVEGIGSTRTRLHPVQERIAKCHGTQCGFCTPGMVMSMYALLRNHP-EPTLDQ 135
Query: 61 MEVALQGNLCRCTGYRPILEGFKTFTEEWERDRLTNGTNGINGSVQNG-NGVCAMGENCC 119
+ AL GNLCRCTGYRPI++ KTF + +G Q+ NGVC + +
Sbjct: 136 LTDALGGNLCRCTGYRPIIDACKTFCKT-------------SGCCQSKENGVCCLDQGI- 181
Query: 120 KNKKPGDEEEKE---ELFSPSEFTPYDKSQEPTFPPELQLNDTYDKEYLQIR---GPRAT 173
N P EE E ELFS EF P D +QE FPPEL +K+ + R R
Sbjct: 182 -NGLPEFEEGDETSPELFSEEEFLPLDPTQELIFPPELMR--MAEKQPQRTRVFYSERMM 238
Query: 174 WYRPQTLTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEEN 233
W P TL +LLE K K+P+A +V+GN+ +G EVKFK F+PV+I P I EL+ +
Sbjct: 239 WISPVTLKELLEAKFKYPQAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGD 298
Query: 234 GVWIGGATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMTG 293
G+ +G SL ++ IL++ ++KLP ++ Y A+++ L AG+QIRN+A++GG+I++
Sbjct: 299 GLTLGAGLSLAQVKDILADVVQKLPEETTQTYRALLKHLGTLAGSQIRNMASLGGHIISR 358
Query: 294 SPISDMNPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAIYIPHTAE 353
SD+NP+L C L L SK EG R++ + F + ++P E+L ++ IP++ +
Sbjct: 359 HLDSDLNPLLAVGNCTLNLLSK-EGKRQIPLSEQFLSKCPDADLKPQEILVSVNIPYSRK 417
Query: 354 TQYFKAYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQ 413
++ A++QA+R+ + +AIVN+ V ++++ ++GG+ PTT+ AK + ++
Sbjct: 418 WEFVSAFRQAQRQQNALAIVNSGMRVFF--GEGDGIIRELSISYGGVGPTTICAKNSCQK 475
Query: 414 MINKPWNQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYKFYIAVSVDTQVTPI 473
+I +PWN+ +L+ R ++ ++ L SAPGG ++++R+L +S +KFY+ +V+ I
Sbjct: 476 LIGRPWNEEMLDTACRLILDEVSLAGSAPGGKVEFKRTLIISFLFKFYL------EVSQI 529
Query: 474 SSRDKSGAQTFHTLPTKSSQYFQVFRVKSGPGGSLIRDLADALPPSLTRLAPYFQVPSTQ 533
R G P+ + +Y S + DL S + + V S Q
Sbjct: 530 LKRMDPGHY-----PSLADKY-----------ESALEDLHSKHHWSTLK---HQNVDSMQ 570
Query: 534 AKSDLVGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALA 593
D +G PI+H S K ATGEAIYCDD+P EL+L FV SS+ HAKI+S+D S AL+
Sbjct: 571 LPQDPIGHPIMHLSGVKHATGEAIYCDDMPAVDQELFLTFVTSSRAHAKIVSIDLSEALS 630
Query: 594 MEGVRGWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALV 653
+ GV VD + + + + A D V CVGQ + VIA+ ++ A++AA V
Sbjct: 631 LPGV---VD--IITAEHLQDANTFGTEKLLATDKVHCVGQLVCAVIADSEVQAKQAAKHV 685
Query: 654 KVTYEEL-PAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFY 712
K+ Y +L P I +I+EAI+HKSFF E + GNVDE F VD ILEGE+ +GGQEHFY
Sbjct: 686 KIVYRDLEPLILTIEEAIQHKSFFEPERKLE-YGNVDEAFKVVDQILEGEIHMGGQEHFY 744
Query: 713 LETNVSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGK 770
+ET + VPK ED M+++VS+Q P IQ++ A L +P N+++ +R+GG FGGK
Sbjct: 745 METQSMLVVPKGEDQEMDVYVSTQFPKYIQDIVAATLKLPVNKVMCHVRRVGGAFGGK 802
>gnl|CDD|234072 TIGR02963, xanthine_xdhA, xanthine dehydrogenase, small subunit.
Members of this protein family are the small subunit
(or, in eukaryotes, the N-terminal domain) of xanthine
dehydrogenase, an enzyme of purine catabolism via urate.
The small subunit contains both an FAD and a 2Fe-2S
cofactor. Aldehyde oxidase (retinal oxidase) appears to
have arisen as a neofunctionalization among xanthine
dehydrogenases in eukaryotes and [Purines, pyrimidines,
nucleosides, and nucleotides, Other].
Length = 467
Score = 425 bits (1095), Expect = e-141
Identities = 154/465 (33%), Positives = 223/465 (47%), Gaps = 72/465 (15%)
Query: 1 MHGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKD 60
+ G AV TVE + +LHPVQ+ + + HGSQCGFCTPG VMS+YAL ++ P P+ D
Sbjct: 74 LDGKAVVTVEDLRQPDGRLHPVQQAMVECHGSQCGFCTPGFVMSLYALYKNSP-APSRAD 132
Query: 61 MEVALQGNLCRCTGYRPILEGFKTFTEEWERDRLTNGTNGINGSVQNGNGVCAMGENCCK 120
+E ALQGNLCRCTGYRPIL+ + + D
Sbjct: 133 IEDALQGNLCRCTGYRPILDAAEAAFDYPCSD---------------------------- 164
Query: 121 NKKPGDEEEKEELFSPSEFTPYDKSQEPTFPPELQLNDTYDKEYLQIRGPRATWYRPQTL 180
P D + P +L E +++ + P TL
Sbjct: 165 --------------------PLDADRAPIIE---RLRALRAGETVELNFGGERFIAPTTL 201
Query: 181 TQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEENGVWIGGA 240
L LKA P+A++V G++++G+ V + P +I + EL + ++G+ IG A
Sbjct: 202 DDLAALKAAHPDARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAA 261
Query: 241 TSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMTGSPISDMN 300
+L D A L+++ +L E+L FA QIRN +GGNI GSPI D
Sbjct: 262 VTLTDAYAALAKRYPELG-----------ELLRRFASLQIRNAGTLGGNIANGSPIGDSP 310
Query: 301 PILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAIYIPHTAETQYFKAY 360
P L+A RL L EG R + ++ F+ Y K +P E + A+++P + F+AY
Sbjct: 311 PALIALGARLTLRKG-EGRRTLPLE-DFFIDYGKTDRQPGEFVEALHVPRPTPGERFRAY 368
Query: 361 KQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQMINKPWN 420
K ++R DDDI+ V AAFN+ L DG VV + AFGGMA T A T ++ KPWN
Sbjct: 369 KISKRFDDDISAVCAAFNLEL----DGGVVAEIRIAFGGMAATPKRAAATEAALLGKPWN 424
Query: 421 QSLLEDTWRNLMADL-PLDHSAPGGMIQYRRSLTLSLFYKFYIAV 464
++ +E L D PL +YR +L +F++
Sbjct: 425 EATVEAAMAALAGDFTPLSDMRASA--EYRLLTAKNLLRRFFLET 467
>gnl|CDD|215096 PLN00192, PLN00192, aldehyde oxidase.
Length = 1344
Score = 355 bits (912), Expect = e-106
Identities = 247/819 (30%), Positives = 383/819 (46%), Gaps = 130/819 (15%)
Query: 1 MHGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALL----------- 49
++G ++TT EG+G++K HP+ +R A H SQCGFCTPG+ +S+++ L
Sbjct: 80 VNGCSITTSEGLGNSKDGFHPIHKRFAGFHASQCGFCTPGMCISLFSALVNADKTDRPEP 139
Query: 50 RSLPGKPTMKDMEVALQGNLCRCTGYRPILEGFKTFTEEWERDRLTNGTNGINGSVQNGN 109
S K T+ + E A+ GNLCRCTGYRPI++ K+F + + + L G+N
Sbjct: 140 PSGFSKLTVVEAEKAVSGNLCRCTGYRPIVDACKSFAADVDIEDL-----GLN------- 187
Query: 110 GVCAMGENCCKNKKPGDEEEKEELFSPSEFTPYDKSQEP-TFPPELQLNDTYDKEYLQIR 168
KK EE K S+ PY+ S TFP L+ + K L +
Sbjct: 188 ---------SFWKKGESEEAKL-----SKLPPYNHSDHICTFPEFLK-KEI--KSSLLLD 230
Query: 169 GPRATWYRPQTLTQLLEL--KAKFPEA--KLVVGNSEIGV---EVKFKKFFYPVLIQPSL 221
R WY P ++ +L L F KLVVGN+ G E + K+ I
Sbjct: 231 SSRYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKDEELYDKY-----IDIRH 285
Query: 222 IPELTQPRVEENGVWIGGATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIR 281
IPEL+ R +E G+ IG +++ L E+ S V+ I + + A +R
Sbjct: 286 IPELSMIRRDEKGIEIGAVVTISKAIEALREE-----SKSEYVFKKIADHMEKIASRFVR 340
Query: 282 NVAAIGGNIMTGS----PISDMNPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIV 337
N +IGGN++ P SD+ IL+AA + +++ A ++T++ F +
Sbjct: 341 NTGSIGGNLVMAQRKQFP-SDIATILLAAGSTVNIQN-ASKREKLTLE-EF-------LE 390
Query: 338 RP----DEVLRAIYIPH---TAETQ---YFKAYKQA-RRRDDDIAIVNAAF--NVTLDIQ 384
RP +L ++ IP ++ + F+ Y+ A R + + +NAAF V+ D
Sbjct: 391 RPPLDSKSLLLSVEIPSWTSSSGSDTKLLFETYRAAPRPLGNALPYLNAAFLAEVSQDAS 450
Query: 385 SDGAVVKDCEFAFGGM-APTTVLAKKTTEQMINKPWNQSLLEDTWRNLMADL-PLD---H 439
S G VV DC AFG + A+K E + K + S+L + R L + P D H
Sbjct: 451 SGGIVVNDCRLAFGAYGTKHAIRARKVEEFLTGKVLSDSVLYEAVRLLKGIVVPEDGTSH 510
Query: 440 SAPGGMIQYRRSLTLSLFYKFYIAVSVDTQVTPISSRDKSGAQTFHTLPTKSSQYFQVFR 499
YR SL + + F + I S KS L S+
Sbjct: 511 PE------YRSSLAVGFLFDFLSPL--------IESNAKSSN---GWLDGGSN------- 546
Query: 500 VKSGPGGSLIRDLADALPPSLTRLAPYFQVPSTQAKSDLVGRPIVHASAFKQATGEAIYC 559
K P D+ ++ QV VG PI A QA+GEA+Y
Sbjct: 547 TKQNPDQHD--DVKKPTLLLSSKQ----QVEENNEYHP-VGEPIKKVGAALQASGEAVYV 599
Query: 560 DDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVRGWVDERDVPGQKNYVG--GII 617
DDIP + LY AF+ S+KP A++ + + L +GV + +D+P +G I
Sbjct: 600 DDIPSPKNCLYGAFIYSTKPLARVKGIKFKSNLVPQGVLAVITFKDIPKGGQNIGSKTIF 659
Query: 618 HDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTY--EEL-PAIFSIQEAIEHKS 674
+ +FA +V C GQ I V+A+ Q A AA L V Y E L P I ++++A++ S
Sbjct: 660 GPEPLFADEVTRCAGQRIALVVADTQKHADMAANLAVVEYDTENLEPPILTVEDAVKRSS 719
Query: 675 FFNLEPSVYGR--GNVDEEFLKVDH-ILEGEVSVGGQEHFYLETNVSVAVPKLEDGCMEI 731
F + P +Y + G++ + + DH IL E+ +G Q +FY+ET ++A+P ED C+ +
Sbjct: 720 LFEVPPFLYPKPVGDISKGMAEADHKILSAEIKLGSQYYFYMETQTALALPD-EDNCIVV 778
Query: 732 FVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGK 770
+ S+Q P + + A LG+P + + T+R+GGGFGGK
Sbjct: 779 YSSTQCPEYVHSVIARCLGIPEHNVRVITRRVGGGFGGK 817
Score = 37.4 bits (87), Expect = 0.039
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 789 WIAETMGHHVAQFLKLDYADFARSNLFVTGNLT-HYNQVLEHC---TLGRCFEQVHESGK 844
+IAE + HVA L +D + NL +L Y TL ++++ S +
Sbjct: 936 YIAEAIIEHVASTLSMDVDSVRKINLHTYESLKLFYGDSAGEPSEYTLPSIWDKLASSSE 995
Query: 845 YKERRKQCEEFNR 857
+K+R + +EFNR
Sbjct: 996 FKQRTEMVKEFNR 1008
>gnl|CDD|226977 COG4630, XdhA, Xanthine dehydrogenase, iron-sulfur cluster and
FAD-binding subunit A [Nucleotide transport and
metabolism].
Length = 493
Score = 271 bits (695), Expect = 6e-82
Identities = 142/464 (30%), Positives = 210/464 (45%), Gaps = 71/464 (15%)
Query: 1 MHGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKD 60
+ G V TVE + LHPVQ+ + HGSQCGFCTPG VMS+YAL + P P+
Sbjct: 82 LDGTHVVTVEHLRGQDGTLHPVQQAMVDFHGSQCGFCTPGFVMSLYALWMNSPT-PSRAA 140
Query: 61 MEVALQGNLCRCTGYRPILEGFKTFTEEWERDRLTNGTNGINGSVQNGNGVCAMGENCCK 120
+E ALQGNLCRCTGYRPI+ + A+G
Sbjct: 141 IEKALQGNLCRCTGYRPIIRA--------------------------AEAIAALGP---- 170
Query: 121 NKKPGDEEEKEELFSPSEFTPYDKSQEPTFPPELQLNDTYDKEYLQIRGPRATWYRPQTL 180
+ F P + +L D E +++ + P TL
Sbjct: 171 ---------------AAGFDPLAARRTAITA---RLRALRDTETVEVGSGDDRFIVPATL 212
Query: 181 TQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEENGVWIGGA 240
+L A P A +V G++++G+ V + +I + EL + V G+ IG
Sbjct: 213 ADFADLLAAHPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAG 272
Query: 241 TSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMTGSPISDMN 300
+ L+ + Y A+ E+ F G Q+RN+ +GGNI GSPI D
Sbjct: 273 VTYTQAYRALAGR-----------YPALGELWDRFGGEQVRNMGTLGGNIANGSPIGDTP 321
Query: 301 PILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAIYIPHTAETQYFKAY 360
P L+A L L S +G R + ++ ++ +Y K +P E + A+ +P A ++ F AY
Sbjct: 322 PALIALGATLTLRSG-DGRRTLPLE-DYFIAYGKQDRQPGEFVEAVRVPLPAPSERFAAY 379
Query: 361 KQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQMINKPWN 420
K ++RRD+DI+ V AF + L DG V D AFGGMA T A + ++ KPW
Sbjct: 380 KISKRRDEDISAVCGAFALDL----DGGRVADARIAFGGMAATPKRASEVEAALLGKPWT 435
Query: 421 QSLLEDTWRNLMADL-PL-DHSAPGGMIQYRRSLTLSLFYKFYI 462
++ +E L D PL D A +YR +L +F++
Sbjct: 436 EATVEAAAAALAGDFTPLTDMRASA---EYRALTAKNLLRRFFL 476
>gnl|CDD|200222 TIGR02965, xanthine_xdhB, xanthine dehydrogenase, molybdopterin
binding subunit. Members of the protein family are the
molybdopterin-containing large subunit (or, in,
eukaryotes, the molybdopterin-binding domain) of
xanthine dehydrogenase, and enzyme that reduces the
purine pool by catabolizing xanthine to urate. This
model is based primarily on bacterial sequences; it does
not manage to include all eukaryotic xanthine
dehydrogenases and thereby discriminate them from the
closely related enzyme aldehyde dehydrogenase [Purines,
pyrimidines, nucleosides, and nucleotides, Other].
Length = 758
Score = 266 bits (682), Expect = 2e-77
Identities = 105/233 (45%), Positives = 142/233 (60%), Gaps = 2/233 (0%)
Query: 539 VGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVR 598
VG + H SA K G A+Y DDIP+ L+ A +S++ HA+I S+D SA A GV
Sbjct: 1 VGTSLKHESAHKHVAGTAVYIDDIPEPAGTLHAALGLSTRAHARITSMDLSAVRAAPGVV 60
Query: 599 GWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYE 658
+ D+PG+ N + IIHDD + A V VGQPI V+A + A+RAA L K+ YE
Sbjct: 61 DVLTAADIPGE-NDISPIIHDDPLLADGKVEFVGQPIFAVVATSRDAARRAARLAKIEYE 119
Query: 659 ELPAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETNVS 718
ELPA+ I+EA+ S P RG+ H L G + +GGQEHFYLE ++
Sbjct: 120 ELPAVLDIEEALAAGSRLVTPPLTLERGDAAAALAAAPHRLSGTMRIGGQEHFYLEGQIA 179
Query: 719 VAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKE 771
+AVP EDG M ++ S+QHPSE+Q + AH LGVPS+ + + +R+GGGFGGKE
Sbjct: 180 LAVPG-EDGGMHVWSSTQHPSEVQHLVAHVLGVPSHAVTVEVRRMGGGFGGKE 231
Score = 55.8 bits (135), Expect = 7e-08
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 17/94 (18%)
Query: 766 GFGGKEKLQSELYGLFTEVREDDWIAETMGHHVAQFLKLDYADFARSNLFVTG--NLTHY 823
GFGG + G+ E + VA+ L D + + N + N+T Y
Sbjct: 342 GFGGPQ-------GMVA--------IERIMDEVARALGKDPLEVRKRNFYGKDERNVTPY 386
Query: 824 NQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNR 857
+Q +E + E++ S Y RR FN
Sbjct: 387 HQTVEDNIIHEIIEELEASSDYAARRAAIRAFNA 420
>gnl|CDD|226978 COG4631, XdhB, Xanthine dehydrogenase, molybdopterin-binding
subunit B [Nucleotide transport and metabolism].
Length = 781
Score = 247 bits (633), Expect = 2e-70
Identities = 103/240 (42%), Positives = 142/240 (59%), Gaps = 4/240 (1%)
Query: 539 VGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVR 598
VG + H SA K TG A+Y DDIP+ L+ A +S + HA+I +D SA A GV
Sbjct: 19 VGTSLRHESAHKHVTGTAVYIDDIPEPAGTLHGALGLSERAHARITRMDLSAVRAAPGVV 78
Query: 599 GWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYE 658
+ DVPG+ N + + HDD + A V GQP+ VIAE + A+RAA L K+ YE
Sbjct: 79 DVLTAADVPGE-NDISPVKHDDPLLADGKVEFHGQPVFAVIAESREAARRAARLAKIEYE 137
Query: 659 ELPAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETNVS 718
+LP + I EAI P RG+ H L+GE+ +GGQEHFYLE ++
Sbjct: 138 DLPPVTDIDEAIAAGRLV-TPPLTLKRGDAAAALAAAPHRLQGEMRIGGQEHFYLEGQIA 196
Query: 719 VAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKEKLQSELY 778
+AVP EDG + ++ S+QHP+E+Q + AH LGVPSN + + +R+GGGFGGKE Q+ +
Sbjct: 197 LAVPG-EDGDVTVWSSTQHPTEVQHLVAHVLGVPSNAVTVEVRRMGGGFGGKE-TQANQF 254
Score = 50.1 bits (120), Expect = 4e-06
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 791 AETMGHHVAQFLKLDYADFARSNLFVTG--NLTHYNQVLEHCTLGRCFEQVHESGKYKER 848
E + VA L D + + N + N+T Y+Q +E + R +++ S Y R
Sbjct: 369 IERIIDEVAYALGKDPLEIRKLNFYGKDGRNVTPYHQTVEDNIIARIVDELEASSDYAAR 428
Query: 849 RKQCEEFNR 857
R+ FN
Sbjct: 429 REAIRAFNA 437
>gnl|CDD|216208 pfam00941, FAD_binding_5, FAD binding domain in molybdopterin
dehydrogenase.
Length = 171
Score = 203 bits (519), Expect = 6e-61
Identities = 74/182 (40%), Positives = 99/182 (54%), Gaps = 11/182 (6%)
Query: 170 PRATWYRPQTLTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPR 229
PR T+YRP +L + L L AK P+AKLV G + +G E+K + PVLI + IPEL
Sbjct: 1 PRFTYYRPASLEEALALLAKGPDAKLVAGGTSLGPEMKLRLARPPVLIDINGIPELRGIE 60
Query: 230 VEENGVWIGGATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGN 289
+G+ IG A +L D+ + V+ A+ E L A QIRNVA IGGN
Sbjct: 61 ETGDGLEIGAAVTLTDLIDS---------PLVAEVFPALAEALRKIASPQIRNVATIGGN 111
Query: 290 IMTGSPISDMNPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAIYIP 349
I SPISD+ P L+A + L S EG R V ++ F+ YRK + P E+L A+ IP
Sbjct: 112 IANASPISDLPPALLALDATVELRS-PEGRRTVPLE-DFFLGYRKTDLEPGELLTAVRIP 169
Query: 350 HT 351
Sbjct: 170 LP 171
>gnl|CDD|216430 pfam01315, Ald_Xan_dh_C, Aldehyde oxidase and xanthine
dehydrogenase, a/b hammerhead domain.
Length = 111
Score = 140 bits (354), Expect = 4e-39
Identities = 57/112 (50%), Positives = 71/112 (63%), Gaps = 4/112 (3%)
Query: 553 TGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVRGWVDERDVPGQKNY 612
TGEA+Y DDIP LYLAFV S+K HA+I S+D SAALA+ GV + +D+PG
Sbjct: 1 TGEAVYVDDIP-APGNLYLAFVRSTKAHARIKSIDTSAALALPGVVAVITAKDLPGLNRG 59
Query: 613 VGGIIH---DDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYEELP 661
+G D + A D V VGQPI V+A+D+ A+ AA LVKV YEELP
Sbjct: 60 IGAPNPLDEPDALLADDKVRFVGQPIAAVVADDEETARDAAELVKVEYEELP 111
>gnl|CDD|214971 smart01008, Ald_Xan_dh_C, Aldehyde oxidase and xanthine
dehydrogenase, a/b hammerhead domain. Aldehyde oxidase
catalyses the conversion of an aldehyde in the presence
of oxygen and water to an acid and hydrogen peroxide.
The enzyme is a homodimer, and requires FAD, molybdenum
and two 2FE-2S clusters as cofactors. Xanthine
dehydrogenase catalyses the hydrogenation of xanthine to
urate, and also requires FAD, molybdenum and two 2FE-2S
clusters as cofactors. This activity is often found in a
bifunctional enzyme with xanthine oxidase activity too.
The enzyme can be converted from the dehydrogenase form
to the oxidase form irreversibly by proteolysis or
reversibly through oxidation of sulphydryl groups.
Length = 107
Score = 137 bits (348), Expect = 3e-38
Identities = 52/109 (47%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 553 TGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVRGWVDERDVPGQKNY 612
TGEA Y DDI + L+ A V S HA+I S+D SAA AM GV + +DVPG N
Sbjct: 1 TGEARYGDDI-RLPGMLHAAVVRSPVAHARIKSIDTSAARAMPGVVAVLTAKDVPG-LND 58
Query: 613 VGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYEELP 661
G + D+ + A D V VGQP+ V+AE + A+ AA VKV YEELP
Sbjct: 59 FGPLGPDEPVLADDKVRYVGQPVAAVVAETEEAARDAAEAVKVEYEELP 107
>gnl|CDD|217566 pfam03450, CO_deh_flav_C, CO dehydrogenase flavoprotein C-terminal
domain.
Length = 103
Score = 131 bits (331), Expect = 5e-36
Identities = 47/107 (43%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 358 KAYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQMINK 417
+AYK ARRRDDDIAIVNAAF VTLD + V D AFGG+APT + A + ++ K
Sbjct: 1 RAYKIARRRDDDIAIVNAAFRVTLD---EDGTVTDARIAFGGVAPTPLRATEAEAALVGK 57
Query: 418 PWNQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYKFYIAV 464
P ++ LE L DL S G +YRR L L +F +
Sbjct: 58 PLDEETLEAAAAALAEDLTPL-SDVRGSAEYRRHLARVLLRRFLLEA 103
>gnl|CDD|201981 pfam01799, Fer2_2, [2Fe-2S] binding domain.
Length = 75
Score = 120 bits (303), Expect = 1e-32
Identities = 39/76 (51%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 8 TVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDMEVALQG 67
TVEG+ KLHPVQ+ + QCG+CTPG+VM+ ALL P PT +++ AL G
Sbjct: 1 TVEGLAEDG-KLHPVQQAFVEHGAVQCGYCTPGMVMAATALLERNP-DPTEEEIREALSG 58
Query: 68 NLCRCTGYRPILEGFK 83
NLCRCTGYR I++ K
Sbjct: 59 NLCRCTGYRRIVDAVK 74
>gnl|CDD|217210 pfam02738, Ald_Xan_dh_C2, Molybdopterin-binding domain of aldehyde
dehydrogenase.
Length = 543
Score = 131 bits (331), Expect = 5e-32
Identities = 43/104 (41%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Query: 669 AIEHKSFFN--LEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETNVSVAVPKLED 726
AIEH S F G+V+ F DH++EGE + G QEHFY+ET+ ++AVP ED
Sbjct: 1 AIEHDSLFENVPHERPAEVGDVEAAFASADHVVEGEYTFGRQEHFYMETHGALAVPD-ED 59
Query: 727 GCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGK 770
+ I+ S+Q P ++ M A LG+P +++ R+GGGFG K
Sbjct: 60 DELTIYSSTQAPHYVRTMVARVLGIPEHKVRVIVPRVGGGFGKK 103
Score = 54.6 bits (132), Expect = 1e-07
Identities = 19/69 (27%), Positives = 36/69 (52%)
Query: 789 WIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKER 848
+ E + +A+ L +D + R NL+ G+ T + Q L+ L C ++ +S +++ R
Sbjct: 222 FALERLIDELARELGIDPLEIRRKNLYKEGDTTPFGQRLDSGNLPECLDECRKSSEFRAR 281
Query: 849 RKQCEEFNR 857
R E+FN
Sbjct: 282 RAAVEKFNI 290
>gnl|CDD|224446 COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large
subunit CoxL/CutL homologs [Energy production and
conversion].
Length = 731
Score = 132 bits (334), Expect = 9e-32
Identities = 72/238 (30%), Positives = 118/238 (49%), Gaps = 9/238 (3%)
Query: 538 LVGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGV 597
++GR ++ A + TG+ Y DDI LY AFV S HA+I+S+D S A + GV
Sbjct: 5 IIGRSVLRADGLGKVTGKGRYADDIV-APGMLYAAFVRSPYAHARIVSIDVSEAQGLPGV 63
Query: 598 RGWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTY 657
+ ++P + D + AR V G+P+ V+AED+ A+ AA LV V Y
Sbjct: 64 LAVITAEELPAWSPVRVELAPADEVLARGKVRYTGEPVAAVVAEDEYQARAAAELVLVEY 123
Query: 658 EELPAIFSIQEAIEHKSF-FNLEPSVYGRGN--VDEEFLKVDHILEGEVSVGGQEHFYLE 714
E LP + +EA+ + + E ++ D+ F ++E ++ +E
Sbjct: 124 EALPPVVDPEEALAEDAPVIHDELNIARDATFGDDDAFAAAAVVVEAPYKTPRKDPNPME 183
Query: 715 TNVSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSN--RIVAKTKRLGGGFGGK 770
+ VAVP D + ++ S+Q P ++ M A LG+P + R+++ +GGGFG K
Sbjct: 184 PHGVVAVPDDGDK-LTVWASTQIPHRLRGMLAAVLGIPPSKVRVIS--PDVGGGFGSK 238
>gnl|CDD|132240 TIGR03196, pucD, xanthine dehydrogenase D subunit. This gene has
been characterized in B. subtilis as the molybdopterin
binding-subunit of xanthine dehydrogenase (pucD), acting
in conjunction with pucC, the FAD-binding subunit and
pucE, the FeS-binding subunit. The more common XDH
complex (GenProp0640) includes the xdhB gene which is
related to pucD. It appears that most of the relatives
of pucD outside of this narrow clade are involved in
other processes as they are found in unrelated genomic
contexts, contain the more common XDH complex and/or do
not appear to process purines to allantoin.
Length = 768
Score = 129 bits (324), Expect = 1e-30
Identities = 76/248 (30%), Positives = 125/248 (50%), Gaps = 10/248 (4%)
Query: 539 VGRPI-VHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGV 597
+G+P V + TGE Y D+ ++ L+ + S+ HA+I V AA +EGV
Sbjct: 3 IGKPSRVRPDGPDKVTGEFKYMGDL-RFPGMLHAKTLRSAHAHAEIRRVCTDAAEKLEGV 61
Query: 598 RGWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTY 657
+ V DVPG + G II D +FA D + G I V AED+ IA+ A A ++V Y
Sbjct: 62 QAMVTAADVPGLARF-GIIIADQPVFAADEIRYAGDAIAAVAAEDEEIAEAALAAIEVDY 120
Query: 658 EELPAIFSIQEAIE------HKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHF 711
EEL + +A++ H++ L + + G+ DE F D + E + +G Q+H
Sbjct: 121 EELAPMDDPDKALQPDAEPLHEAGNILHEAEFRHGDPDEGFAAGDTVFEDQYELGMQDHA 180
Query: 712 YLETNVSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKE 771
+L ++A+P DG ++ ++QH + +E A +P +I +GG FGGK+
Sbjct: 181 FLAPEAALAMPA-ADGGFDLRAATQHGHKDREQIAACFDIPEEKIRITLAGMGGAFGGKD 239
Query: 772 KLQSELYG 779
L +++
Sbjct: 240 DLNIQIHA 247
>gnl|CDD|236637 PRK09970, PRK09970, xanthine dehydrogenase subunit XdhA;
Provisional.
Length = 759
Score = 128 bits (323), Expect = 2e-30
Identities = 73/251 (29%), Positives = 111/251 (44%), Gaps = 18/251 (7%)
Query: 537 DLVGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEG 596
+G+ I+ A + TG A Y DD LY +V S H K+ S+D A ++ G
Sbjct: 1 MAIGKSIMRVDAIAKVTGRAKYTDDYVM-AGMLYAKYVRSPIAHGKVKSIDTEEARSLPG 59
Query: 597 VRGWVDERDVPGQKNYVGG------IIHDDV---IFARDVVTCVGQPIGGVIAEDQLIAQ 647
V DVP G H D+ V G + V+A D+L A+
Sbjct: 60 VEAVFTWEDVPDIPFPTAGHPWSLDPNHRDIADRALLTRHVRHHGDAVAAVVARDELTAE 119
Query: 648 RAAALVKVTYEELPAIFSIQEAIE------HKSFFN-LEPSVYGRGNVDEEFLKVDHILE 700
+A L+KV YEELP I + A+ H N L+ S GNV + D+ ++
Sbjct: 120 KALKLIKVEYEELPVITDPEAALAEGAPPIHNGRGNLLKQSTMSTGNVQQTIKAADYQVQ 179
Query: 701 GEVSVGGQEHFYLETNVSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKT 760
G +H ++E NV+ +DG + I S+Q P ++ + ALG+P ++
Sbjct: 180 GHYETPIVQHCHME-NVTSYAYMEDDGRITIVSSTQIPHIVRRVVGQALGIPWGKVRVIK 238
Query: 761 KRLGGGFGGKE 771
+GGGFG K+
Sbjct: 239 PYVGGGFGNKQ 249
>gnl|CDD|182175 PRK09971, PRK09971, xanthine dehydrogenase subunit XdhB;
Provisional.
Length = 291
Score = 113 bits (285), Expect = 1e-27
Identities = 83/259 (32%), Positives = 118/259 (45%), Gaps = 23/259 (8%)
Query: 172 ATWYRPQTLTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVE 231
A ++ TL + +EL A P+AKL+ G +++ +++ Y L+ I EL +
Sbjct: 5 AEYHEAATLEEAIELLADNPQAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLA 64
Query: 232 ENG-VWIGGATSLNDMRAILSEQIEKLPSHKSRVYV---AIVEMLHWFAGNQIRNVAAIG 287
E+G + IG AT+ QI + P + + A V + G QIRNVA IG
Sbjct: 65 EDGSIRIGAATTFT--------QIIEDPIIQKHLPALAEAAVSI----GGPQIRNVATIG 112
Query: 288 GNIMTGSPISDMNPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAIY 347
GNI G+ +D P L A +L + S G R V ++G FYT K + DE+L A
Sbjct: 113 GNICNGATSADSAPPLFALDAKLEIHSP-NGVRFVPING-FYTGPGKVSLEHDEILVAFI 170
Query: 348 IPHTAETQYFKAY-KQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVL 406
IP AY K A R DIA + A LD +G +D AFG APT +
Sbjct: 171 IPPEPYEHAGGAYIKYAMRDAMDIATIGCAVLCRLD---NGN-FEDLRLAFGVAAPTPIR 226
Query: 407 AKKTTEQMINKPWNQSLLE 425
+ + P N LE
Sbjct: 227 CQHAEQTAKGAPLNLETLE 245
>gnl|CDD|215021 smart01092, CO_deh_flav_C, CO dehydrogenase flavoprotein C-terminal
domain.
Length = 102
Score = 103 bits (258), Expect = 3e-26
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 359 AYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQMINKP 418
AYK++RRRD DIA+V+AA +TLD G V + A GG+APT A + ++ KP
Sbjct: 1 AYKKSRRRDGDIALVSAAVALTLD----GGRVTEARIALGGVAPTPKRAAEAEAALVGKP 56
Query: 419 WNQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYKFYIAV 464
L +A S +YRR L +L + +
Sbjct: 57 LTDEALARAAAAALAQDFTPLSDMRASAEYRRQLAANLLRRALLEA 102
>gnl|CDD|132238 TIGR03194, 4hydrxCoA_A, 4-hydroxybenzoyl-CoA reductase, alpha
subunit. This model represents the largest chain,
alpha, of the enzyme 4-hydroxybenzoyl-CoA reductase. In
species capable of degrading various aromatic compounds
by way of benzoyl-CoA, this enzyme can convert
4-hydroxybenzoyl-CoA to benzoyl-CoA.
Length = 746
Score = 114 bits (288), Expect = 4e-26
Identities = 74/236 (31%), Positives = 109/236 (46%), Gaps = 11/236 (4%)
Query: 553 TGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVRGWVDERDVPGQKNY 612
TG+A Y D+ L + S HA+IL++D S A A+ GV V D P
Sbjct: 11 TGKAKYTADLA-APGALVGRILRSPHAHARILAIDTSEAEALPGVIAVVTGADCP-VPYG 68
Query: 613 VGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYEELPAIFSIQEAIEH 672
V I ++ ARD V G P+ V A D++ A++A AL+KV YEELPA + A++
Sbjct: 69 VLPIAENEYPLARDKVRYRGDPVAAVAAVDEVTAEKALALIKVEYEELPAYMDPKAAMKA 128
Query: 673 KSFF-------NLEPSVYGR-GNVDEEFLKVDHILEGEVSVGGQEHFYLETNVSVAVPKL 724
+ N+E V+ G+V F + D I E + H ++E N ++A
Sbjct: 129 GAILLHDNKPGNIEREVHNEFGDVAAAFAEADLIREKTFTCAEVNHAHMEPNATLAEYDP 188
Query: 725 EDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGK-EKLQSELYG 779
G + + +Q P + A L + S RI LGGGFG + E L E+
Sbjct: 189 VRGMLTLNSVTQVPYYVHLKLARCLQMDSARIRVIKPFLGGGFGARVEPLNFEIIA 244
>gnl|CDD|132354 TIGR03311, Se_dep_Molyb_1, selenium-dependent molybdenum
hydroxylase 1. Members of this protein family show full
length homology to the molybdenum-containing aldehyde
oxido-reductase of Desulfovibrio gigas. Members,
however, are found only within species that have, and
near those genes that encode, a set of predicted
accessory proteins for selenium-dependent molybdenum
hydroxylases. The best known examples of such enzymes
are forms of xanthine dehydrogenase and purine
hydroxylase; this family appears to be another such
enzyme.
Length = 848
Score = 114 bits (287), Expect = 5e-26
Identities = 74/244 (30%), Positives = 115/244 (47%), Gaps = 12/244 (4%)
Query: 538 LVGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGV 597
+G A + GE +Y DD+ + + LY + + S P A + S+D + AL GV
Sbjct: 161 KLGENFPRVDAVPKVLGEGVYVDDM-QIEGMLYGSALRSKYPRALVKSIDITVALKHPGV 219
Query: 598 RGWVDERDVPGQKNYVGGIIHD-DVIFARDVVT-CVGQPIGGVIAEDQLIAQRAAALVKV 655
+ +D+PG +G I D + A +T VG + V A+ + + A L+KV
Sbjct: 220 VAVLTAKDIPG-NRKIGHIFKDWPALIAVGEITRYVGDAVALVAAKSKEALREALNLIKV 278
Query: 656 TYEELPAIFSIQEAIE------HKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQE 709
YEELP + S +EA+ H L RG+ +E +++ S E
Sbjct: 279 DYEELPPLTSPEEALAEGAPAIHPKGNILSEEHVVRGDAEEALENSAYVVTNHYSTPFTE 338
Query: 710 HFYLETNVSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGG 769
H +LE ++AVP E + I+ S+Q + Q A LG+P +I K +GGGFGG
Sbjct: 339 HAFLEPESALAVP--EGDGVIIYTSTQGVYDEQRELASLLGLPKEKIRVINKFVGGGFGG 396
Query: 770 KEKL 773
KE +
Sbjct: 397 KEDM 400
Score = 71.8 bits (176), Expect = 1e-12
Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 7/90 (7%)
Query: 3 GLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDME 62
G +TTVEG+ + ++ AKA QCGFC PG+V+S ALL P PT +++
Sbjct: 64 GKEITTVEGLTEREKDVYAWA--FAKAGAVQCGFCIPGMVISAKALLDKNP-NPTEAEIK 120
Query: 63 VALQGNLCRCTGYRPILEGF----KTFTEE 88
AL+GN+CRCTGY I++ K F EE
Sbjct: 121 KALKGNICRCTGYVKIIKAVRLAAKAFREE 150
>gnl|CDD|224238 COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle
subunit CoxM/CutM homologs [Energy production and
conversion].
Length = 284
Score = 108 bits (272), Expect = 5e-26
Identities = 70/283 (24%), Positives = 120/283 (42%), Gaps = 23/283 (8%)
Query: 173 TWYRPQTLTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQ-PRVE 231
+YRP ++ + L L A+ P+AK + G +++ +K L+ + + EL E
Sbjct: 5 EYYRPASVEEALNLLARAPDAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTE 64
Query: 232 ENGVWIGGATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIM 291
+ IG +L ++ R+ A+ E A Q+RN A IGGN+
Sbjct: 65 GGSLRIGALVTLTEIARH---------PAVRRIPPALSEAASAIASPQVRNRATIGGNLC 115
Query: 292 TGSPISDMNPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAIYIPHT 351
P +D+ P L+A + + S G R + ++ F+ + + P E++ A+ +P
Sbjct: 116 NADPAADLAPALLALDAEVEIRSPG-GERTIPIED-FFRGPGETALEPGELITAVILP-P 172
Query: 352 AETQYFKAYKQARRRDD-DIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKT 410
YK+ RRR IA+V+ A + D V + A GG+AP +
Sbjct: 173 PPAARGAYYKKVRRRASFAIALVSVAAKLRGD------RVSEARVALGGVAPKPWRLEDA 226
Query: 411 TEQMINKPWNQSLLEDTWRNLMADL-PLDHSAPGGMIQYRRSL 452
++ KP + LE M + P+ G +YRR L
Sbjct: 227 EAALLGKPLSLETLEAAAEAAMQEAAPISD--VRGSAEYRRKL 267
>gnl|CDD|224991 COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small
subunit CoxS/CutS homologs [Energy production and
conversion].
Length = 156
Score = 103 bits (258), Expect = 2e-25
Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 2 HGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDM 61
G +TT+EG+ LHPVQ+ + QCG+CTPG +MS ALL P PT +++
Sbjct: 68 EGAEITTIEGLAKKDGGLHPVQQAFLEHDAFQCGYCTPGQIMSATALLDRNP-APTDEEI 126
Query: 62 EVALQGNLCRCTGYRPILE 80
AL GNLCRCTGY+ I+
Sbjct: 127 REALSGNLCRCTGYQNIVA 145
>gnl|CDD|132237 TIGR03193, 4hydroxCoAred, 4-hydroxybenzoyl-CoA reductase, gamma
subunit. 4-hydroxybenzoyl-CoA reductase converts
4-hydroxybenzoyl-CoA to benzoyl-CoA, a common
intermediate in the degradation of aromatic compounds.
This protein family represents the gamma chain of this
three-subunit enzyme.
Length = 148
Score = 84.2 bits (208), Expect = 5e-19
Identities = 38/82 (46%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 3 GLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDME 62
G V TVEG+ +T +L +Q+ + G+QCGFCTPG++M+ ALLR P P+ ++
Sbjct: 67 GRKVETVEGL-ATNGRLSRLQQAFHERLGTQCGFCTPGMIMAAEALLRRNP-SPSRDEIR 124
Query: 63 VALQGNLCRCTGYRPILEGFKT 84
AL GNLCRCTGY I+E +
Sbjct: 125 AALAGNLCRCTGYVKIIESVEA 146
>gnl|CDD|132242 TIGR03198, pucE, xanthine dehydrogenase E subunit. This gene has
been characterized in B. subtilis as the Iron-sulfur
cluster binding-subunit of xanthine dehydrogenase
(pucE), acting in conjunction with pucC, the FAD-binding
subunit and pucD, the molybdopterin binding subunit. The
more common XDH complex (GenProp0640) includes the xdhA
gene as the Fe-S cluster binding component.
Length = 151
Score = 84.1 bits (208), Expect = 5e-19
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 3 GLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDME 62
G +TT+EGI + +L P Q + G QCG+CTPG+V+++ AL R P +P+ +DME
Sbjct: 69 GHEITTIEGI--AENELDPCQTAFLEEGGFQCGYCTPGMVVALKALFRETP-QPSDEDME 125
Query: 63 VALQGNLCRCTGYRPILEGFK 83
L GNLCRCTGY I+
Sbjct: 126 EGLSGNLCRCTGYGGIIRSAC 146
>gnl|CDD|182139 PRK09908, PRK09908, xanthine dehydrogenase subunit XdhC;
Provisional.
Length = 159
Score = 77.6 bits (191), Expect = 1e-16
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 3 GLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKP-TMKDM 61
G + T+EG KL VQ+ AK+ QCGFCTPG++M+ A+L KP T+ ++
Sbjct: 73 GKEIRTLEGEAKGG-KLSHVQQAYAKSGAVQCGFCTPGLIMATTAMLAKPREKPLTITEI 131
Query: 62 EVALQGNLCRCTGYRPILEGFK 83
L GNLCRCTGY+ I+
Sbjct: 132 RRGLAGNLCRCTGYQMIVNTVL 153
>gnl|CDD|131469 TIGR02416, CO_dehy_Mo_lg, carbon-monoxide dehydrogenase, large
subunit. This model represents the large subunits of
group of carbon-monoxide dehydrogenases that include
molybdenum as part of the enzymatic cofactor. There are
various forms of carbon-monoxide dehydrogenase;
Salicibacter pomeroyi DSS-3, for example, has two forms.
Note that, at least in some species, the active site Cys
is modified with a selenium attached to (rather than
replacing) the sulfur atom. This is termed
selanylcysteine, and created post-translationally, in
contrast to selenocysteine incorporation during
translation as for many other selenoproteins [Energy
metabolism, Other].
Length = 770
Score = 76.5 bits (188), Expect = 4e-14
Identities = 63/242 (26%), Positives = 103/242 (42%), Gaps = 28/242 (11%)
Query: 554 GEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVRGWVDERDVPGQKNYV 613
G+ Y DD+ K L+ V S HA+I S+D SAA A+ GV + D+ +
Sbjct: 8 GKGNYVDDV-KLPGMLHGDIVRSPHAHARIKSIDTSAAKALPGVFAVLTAADLKPLNLHW 66
Query: 614 GGIIHDDV--IFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYEELPAIFSIQEAIE 671
+ DV + A + V Q + V+A+D+ +A A LV+V YE LP + +A+E
Sbjct: 67 MPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVVIDPFKALE 126
Query: 672 -----------------------HKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQ 708
H F E + D F K + +++ ++
Sbjct: 127 PDAPVLREDLKGKTTGAHGARKHHNHIFRWEIG--DKAATDAVFAKAEVVVKQMMTYPRV 184
Query: 709 EHFYLETNVSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFG 768
LET VA G + ++ + Q P I+ + + G+P ++I + +GGGFG
Sbjct: 185 HPSPLETCGCVASMDPIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIRVISPDIGGGFG 244
Query: 769 GK 770
K
Sbjct: 245 NK 246
>gnl|CDD|236910 PRK11433, PRK11433, aldehyde oxidoreductase 2Fe-2S subunit;
Provisional.
Length = 217
Score = 71.7 bits (176), Expect = 5e-14
Identities = 36/95 (37%), Positives = 48/95 (50%), Gaps = 16/95 (16%)
Query: 1 MH-GLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALL---------- 49
MH G +TT+EG+G + LHP+Q K G QCG+CTPG + S A+L
Sbjct: 114 MHQGAEITTIEGLG-SPDNLHPMQAAFVKHDGFQCGYCTPGQICSSVAVLKEIKDGIPSH 172
Query: 50 --RSLPGKPTMKDMEVA--LQGNLCRCTGYRPILE 80
L P + E+ + GN+CRC Y ILE
Sbjct: 173 VTVDLTAAPELTADEIRERMSGNICRCGAYSNILE 207
>gnl|CDD|182084 PRK09800, PRK09800, putative hypoxanthine oxidase; Provisional.
Length = 956
Score = 72.9 bits (179), Expect = 5e-13
Identities = 87/396 (21%), Positives = 153/396 (38%), Gaps = 92/396 (23%)
Query: 466 VDTQVTPISSRDKSGAQTFHTLPTKSSQYFQVFRVKSGPGGSLIRDLADALPPSLTRLAP 525
+D ++ + SRD +G Q QY+QV + + P + +AP
Sbjct: 124 IDDALSGLFSRD-AGWQ----------QYYQVIELAV-------ARKNN--PQATIDIAP 163
Query: 526 YFQVPSTQAKSDLVGRPIVHASAFKQATGEAIYCDD-IPKYQTELYLAFVVSSKPHAKIL 584
F+ +++G+ A K + Y +D + + + S HA I
Sbjct: 164 TFR-----DDLEVIGKHYPKTDAAKMVQAKPCYVEDRVT--ADACVIKMLRSPHAHALIT 216
Query: 585 SVDPSAALAMEGVRGWVDERDVPGQKNYVGG------IIHDDVIFARDVVTCVGQPIGGV 638
+D S A A+ GV + + P GG D +F + + VG + V
Sbjct: 217 HLDVSKAEALPGVVHVITHLNCPDIYYTPGGQSAPEPSPLDRRMFGKKMRH-VGDRVAAV 275
Query: 639 IAEDQLIAQRAAALVKVTYEELPAIFSIQEA------------IEHKS------------ 674
+AE + IA A L+ V YE L + SI EA + + +
Sbjct: 276 VAESEEIALEALKLIDVEYEVLKPVMSIDEAMAEDAPVVHDEPVVYVAGAPDTLEDDNSH 335
Query: 675 ------------------FFNLEPSVYGR-GNVDEEFLKVDHILEGEVSVGGQEHFYLET 715
N+ S++G G++D+ F D I+E + + ET
Sbjct: 336 AAQRGEHMIINFPIGSRPRKNIAASIHGHIGDMDKGFADADVIIERTYNSTQAQQCPTET 395
Query: 716 NVSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKEK-LQ 774
++ +++ + I S+Q P ++ A +G+ +++ +R+GGGFG K+ L
Sbjct: 396 HICFT--RMDGDRLVIHASTQVPWHLRRQVARLVGMKQHKVHVIKERVGGGFGSKQDILL 453
Query: 775 SELYG----------LFTEVREDDWIAETMGHHVAQ 800
E+ LF RE+++IA T HVA+
Sbjct: 454 EEVCAWATCVTGRPVLFRYTREEEFIANT-SRHVAK 488
Score = 34.0 bits (78), Expect = 0.43
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 1 MHGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKD 60
+ + T E +G +L VQ+ + Q G+ P + + LL + PT ++
Sbjct: 66 LEKADIRTAESLGKWN-ELSLVQQAMVDVGVVQSGYNDPAAALIITDLLDRIA-APTREE 123
Query: 61 MEVALQGNLCRCTGYR 76
++ AL G R G++
Sbjct: 124 IDDALSGLFSRDAGWQ 139
>gnl|CDD|132356 TIGR03313, Se_sel_red_Mo, probable selenate reductase,
molybdenum-binding subunit. Our comparative genomics
suggests this protein family to be a subunit of a
selenium-dependent molybdenum hydroxylase, although the
substrate is not specified. This protein is suggested by
Bebien, et al., to be the molybdenum-binding subunit of
a molydbopterin-containing selenate reductase. Xi, et
al, however, show that mutation of this gene in E. coli
conferred sensitivity to adenine, suggesting a defect in
purine interconversion. This finding, plus homology of
nearby genes in a 23-gene purine catabolism region in E.
coli to xanthine dehydrogase subunits suggests xanthine
dehydrogenase activity.
Length = 951
Score = 63.1 bits (153), Expect = 5e-10
Identities = 83/371 (22%), Positives = 142/371 (38%), Gaps = 85/371 (22%)
Query: 493 QYFQVFRVKSGPGGSLIRDLADALPPSLTRLAPYFQVPSTQAKSDL--VGRPIVHASAFK 550
Q++QV + ++D P +AP F + DL +G+ A K
Sbjct: 136 QFYQVIELAV----KRLKD-----PEHKQSIAPEF-------RDDLTIIGKNCPKIDAAK 179
Query: 551 QATGEAIYCDD-IPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVRGWVDERDVPGQ 609
+ Y +D +P + + S PHA I +D S A A+ GV + + P
Sbjct: 180 MVQAKPCYVEDRVP--ADACVIKMLRSPHPHAWITHLDVSKAEALPGVVHVITHLNCPDI 237
Query: 610 KNYVGGIIH------DDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYEELPAI 663
GG D +F + + VG + V+AE + IA A L++V Y+ L +
Sbjct: 238 YYTPGGQSAPEPSPLDRRMFGQKM-RHVGDRVAAVVAESEEIALHALKLIEVEYDVLTPV 296
Query: 664 FSIQEAI-EHKSFFNLEPSVYGR------------------------------------- 685
SI EA+ + EP VYG
Sbjct: 297 MSIDEAMAAEAPIVHDEPIVYGAGAPDDLEEQNANADPRGEHMIINFPIGSRPRKNIAAS 356
Query: 686 -----GNVDEEFLKVDHILEGEVSVGGQEHFYLETNVSVAVPKLEDGCMEIFVSSQHPSE 740
G++++ F + D I+E + ET++ ++ + I S+Q P
Sbjct: 357 VHGHIGDLNKGFAEADVIIERTYESTQAQQCPTETHICFT--YMDGERLVIHASTQVPWH 414
Query: 741 IQEMTAHALGVPSNRIVAKTKRLGGGFGGKEKLQSE--------LYG---LFTEVREDDW 789
++ A +G+ +++ +R+GGGFG K+ + E + G F RE+++
Sbjct: 415 VRRQVARIVGMKQHKVHVIKERVGGGFGSKQDILLEEVCAWATWVTGRPVYFRYTREEEF 474
Query: 790 IAETMGHHVAQ 800
I T HVA+
Sbjct: 475 ICNT-SRHVAK 484
>gnl|CDD|234145 TIGR03199, pucC, xanthine dehydrogenase C subunit. This gene has
been characterized in B. subtilis as the FAD
binding-subunit of xanthine dehydrogenase (pucC), acting
in conjunction with pucD, the molybdopterin-binding
subunit and pucE, the FeS-binding subunit.
Length = 264
Score = 58.8 bits (142), Expect = 3e-09
Identities = 65/266 (24%), Positives = 113/266 (42%), Gaps = 28/266 (10%)
Query: 177 PQTLTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPV---LIQPSLIPELTQPRVEEN 233
P L + L K P++ V G++ ++++++K P+ L+ I EL +
Sbjct: 1 PAALDEAWSLLEKAPDSTFVSGSTL--LQLQWEKGTLPMKQHLVSLEGIDELKGISTSDT 58
Query: 234 GVWIGGATSLNDMRAILSEQI-EKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMT 292
V IG T+LN+ R + I LP V+ A +RN A IGGNI +
Sbjct: 59 HVSIGALTTLNECRK--NPLIKRALPC--------FVDAASAIAAPGVRNRATIGGNIAS 108
Query: 293 GSPISDMNPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAIYIPHTA 352
G I D P L+ L++ K + + + S + +P ++ + I A
Sbjct: 109 G--IGDFIPALLVLGAELIVYQK----ELIRLPLGAWLS--EEDFKPTAIVTRVIIGPRA 160
Query: 353 ETQYFKAYKQARRRDDDI-AIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTT 411
ET F Y + RR+ ++V A LD +K+ A GG T +
Sbjct: 161 ETGEFVFYHKVGRRETFTGSLVVVAGRFLLD---GSQTIKEIRLAVGGADITPRRLLDSE 217
Query: 412 EQMINKPWNQSLLEDTWRNLMADLPL 437
+++ PW+ LL + ++ ++ +LP
Sbjct: 218 AKLMAPPWDPHLLAELYKTIIQELPF 243
>gnl|CDD|132355 TIGR03312, Se_sel_red_FAD, probable selenate reductase, FAD-binding
subunit. This protein is suggested by Bebien, et al.,
to be the FAD-binding subunit of a
molydbopterin-containing selenate reductase. Our
comparative genomics suggests it to be a subunit of a
selenium-dependent molybdenum hydroxylase for an unknown
substrate.
Length = 257
Score = 36.0 bits (83), Expect = 0.052
Identities = 59/293 (20%), Positives = 100/293 (34%), Gaps = 70/293 (23%)
Query: 174 WYRPQTLTQLLELKAKFP-EAKLVVGNSEIG---------VEVKFKKFFYPVLIQPSLIP 223
++RP++ Q LELK + A G S++ V + K
Sbjct: 4 FFRPESTIQALELKKRHTGVAVWFAGGSKLNATPTRTDKKVAISLDKL------------ 51
Query: 224 ELTQPRVEENGVWIGGATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNV 283
L + ++ + IG L + A+ E L + IRN
Sbjct: 52 ALDKIELQGGALHIGAMCHLQSLI------------DNELTPAALKEALGFVYSRHIRNQ 99
Query: 284 AAIGGNIMTGSPISDMNPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVL 343
A IGG I S + P+L+A + ++L + + MD Y + + E++
Sbjct: 100 ATIGGEIAAFQSESLLLPVLLALKATVVLANAS------QMDIEDYLASEQ-----RELI 148
Query: 344 RAIYIPHTAETQYFKAYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPT 403
+ IP A + R +A+V AA V Q + A G++P
Sbjct: 149 VEVIIP---NPNLMCATRNISRSAAGLAVVTAAVAVD---QKGNMRI-----ALDGVSPV 197
Query: 404 TVLAKKTTEQMINKPWNQSLLEDTWRNLM---ADLPLDHSAPGGMIQYRRSLT 453
V + Q + LE + + ADL G + Y+R +
Sbjct: 198 PVRLRDVEAQDL----KGEALEQAVADAIHPVADL-------CGSVAYKRYIA 239
>gnl|CDD|182083 PRK09799, PRK09799, putative oxidoreductase; Provisional.
Length = 258
Score = 36.3 bits (84), Expect = 0.052
Identities = 52/238 (21%), Positives = 88/238 (36%), Gaps = 48/238 (20%)
Query: 174 WYRPQTLTQLLELKAKF-PEAKLVVGNSEIGVEVKFKKFFYPVLIQPSL---IPELTQPR 229
++RP ++ Q LELK ++ EA G S++ P + + +L
Sbjct: 5 FFRPDSVEQALELKRRYQDEAVWFAGGSKLNAT--------PTRTDKKIAISLQDLELDW 56
Query: 230 VEENG--VWIGGATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIG 287
+E + + IG + L +R +P A+ E L + +RN + IG
Sbjct: 57 IEWDNGALRIGAMSRLQPLR-----DARFIP-------AALREALGFVYSRHLRNQSTIG 104
Query: 288 GNIMTGSPISDMNPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAIY 347
G I S + P+L+A L+ + T+ Y + D +L I
Sbjct: 105 GEIAARQEESVLLPVLLALDAELVFGNGE------TLSIEDYLACPC-----DRLLTEII 153
Query: 348 IPHTAETQYFKAYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTV 405
IP + A ++ R + +V AA V L DG A G+A +
Sbjct: 154 IP---DPYRTCATRKISRSQAGLTVVTAA--VALT-DHDGMR-----IALDGVASKPL 200
>gnl|CDD|132239 TIGR03195, 4hydrxCoA_B, 4-hydroxybenzoyl-CoA reductase, beta
subunit. This model represents the second largest
chain, beta, of the enzyme 4-hydroxybenzoyl-CoA
reductase. In species capable of degrading various
aromatic compounds by way of benzoyl-CoA, this enzyme
can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Length = 321
Score = 35.6 bits (82), Expect = 0.11
Identities = 66/323 (20%), Positives = 117/323 (36%), Gaps = 62/323 (19%)
Query: 176 RPQTLTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEENGV 235
RP +L + A P A+ + G +++ ++ L+ + I E+ Q +G+
Sbjct: 9 RPASLADAVAALAAHPAARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGL 68
Query: 236 WIGGATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMTGS- 294
IG +L A L+E + A+ + AG R A +GGN+ +
Sbjct: 69 RIGAGVTL----AALAEDALVRTR-----WPALAQAARAVAGPTHRAAATLGGNLCLDTR 119
Query: 295 ----------------------------PIS---------DMNPILMAARCRLLLESKAE 317
P S D+ P L+ + A
Sbjct: 120 CIYYNQSEWWRSGNGYCLKYRGDKCHVAPKSDRCYAAFSGDVAPALLVLDAEAEIVGPA- 178
Query: 318 GTREVTMDGSFYTSYRKNI-VRPDEVLRAIYIPHTAETQYFKAYKQARRRDDDIAIVNAA 376
G R V + + ++ + P EVL A+ +P T + AY + R R AI
Sbjct: 179 GVRRVPLAELYVEDGAAHLTLEPGEVLAAVRVPPT--GGWTSAYSKVRVRG---AIDFPL 233
Query: 377 FNVTLDIQSDGAVVKDCEFAFGGM--APTTVLAKKTTEQMINKPWNQSLLEDTWRNLMAD 434
V + +Q DG + A G P V T+ + +P + + E+ R +
Sbjct: 234 AGVAVALQRDGDRIAGLRVALTGTNSRPLMV---PGTDALAGRPLDDAAAEEIARLVRKT 290
Query: 435 L-PLDHSAPGGMIQYRRSLTLSL 456
P+ + G ++YRR + L++
Sbjct: 291 SQPMRTTLMG--VKYRRRVLLAI 311
>gnl|CDD|236632 PRK09918, PRK09918, putative fimbrial chaperone protein;
Provisional.
Length = 230
Score = 28.9 bits (65), Expect = 9.6
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 214 PVLIQPSLIPELTQPRVEENGVWIGGATSL---NDMRAI--LSEQIEKLPSHKS 262
PVLIQP+ +P + P + VW +L N + L +Q+ LPS K
Sbjct: 130 PVLIQPAALPVVRDPW--KLLVWSISGNNLVVSNPSPYVVRLGQQVILLPSGKV 181
>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP).
This family consists of several Trypanosoma brucei
procyclic acidic repetitive protein (PARP) like
sequences. The procyclic acidic repetitive protein
(parp) genes of Trypanosoma brucei encode a small family
of abundant surface proteins whose expression is
restricted to the procyclic form of the parasite. They
are found at two unlinked loci, parpA and parpB;
transcription of both loci is developmentally regulated.
Length = 145
Score = 28.4 bits (62), Expect = 9.9
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 81 GFKTFTEEWERDRLTNGTNGINGSVQNGNGVCAMGENCCKNKKPGDEEEKEELFSPSEFT 140
GF +E +T G G G +G + P DE E+EE P E
Sbjct: 23 GFAAAADEPADKGITKGGKG------KGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEG 76
Query: 141 PYDKSQEPTFPPELQLNDTYDKE 163
+ E E + +T ++E
Sbjct: 77 EEEPEPEEEGEEEPEPEETGEEE 99
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 44,199,584
Number of extensions: 4420451
Number of successful extensions: 3272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3184
Number of HSP's successfully gapped: 52
Length of query: 857
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 752
Effective length of database: 6,280,432
Effective search space: 4722884864
Effective search space used: 4722884864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.0 bits)