RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14046
(857 letters)
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL;
1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A*
1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A*
2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B*
3b9j_A* 1fiq_A*
Length = 1332
Score = 906 bits (2342), Expect = 0.0
Identities = 347/784 (44%), Positives = 488/784 (62%), Gaps = 62/784 (7%)
Query: 1 MHGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKD 60
+H +AVTTVEGIGSTKT+LHPVQER+AK+HGSQCGFCTPGIVMSMY LLR+ P +PT+++
Sbjct: 80 LHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQP-EPTVEE 138
Query: 61 MEVALQGNLCRCTGYRPILEGFKTFTEEWERDRLTNGTNGINGSVQNGNGVCAMGENCCK 120
+E A QGNLCRCTGYRPIL+GF+TF + G NCC
Sbjct: 139 IEDAFQGNLCRCTGYRPILQGFRTFAKNG-----------------GCCGGNGNNPNCCM 181
Query: 121 NKKPGDEEE-KEELFSPSEFTPYDKSQEPTFPPELQLNDTYDKEYLQIRGPRATWYRPQT 179
N+K LF+P EF P D +QEP FPPEL + L+ G R TW + T
Sbjct: 182 NQKKDHTVTLSPSLFNPEEFMPLDPTQEPIFPPELLRLKDVPPKQLRFEGERVTWIQAST 241
Query: 180 LTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEENGVWIGG 239
L +LL+LKA+ PEAKLVVGN+EIG+E+KFK +P++I P+ IPEL G+ G
Sbjct: 242 LKELLDLKAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGISFGA 301
Query: 240 ATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMTGSPISDM 299
A +L+ + L E + KLP+ K+ V+ ++E L WFAG Q+++VA++GGNI+T SPISD+
Sbjct: 302 ACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITASPISDL 361
Query: 300 NPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAIYIPHTAETQYFKA 359
NP+ MA+ +L + S+ R V MD +F+ SYRK ++ P+E+L +I IP++ E ++F A
Sbjct: 362 NPVFMASGTKLTIVSR-GTRRTVPMDHTFFPSYRKTLLGPEEILLSIEIPYSREDEFFSA 420
Query: 360 YKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQMINKPW 419
+KQA RR+DDIA V V VK+ +GGMA T+ A KTT++ ++K W
Sbjct: 421 FKQASRREDDIAKVTCGMRVLFQ--PGSMQVKELALCYGGMADRTISALKTTQKQLSKFW 478
Query: 420 NQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYKFYIAVS------VDTQVTPI 473
N+ LL+D L +L L APGGMI++RR+LTLS F+KFY+ V + +
Sbjct: 479 NEKLLQDVCAGLAEELSLSPDAPGGMIEFRRTLTLSFFFKFYLTVLKKLGKDSKDKCGKL 538
Query: 474 SSRDKSGAQTFHTLPTKSSQYFQVFRVKSGPGGSLIRDLADALPPSLTRLAPYFQVPSTQ 533
S F P + Q FQ +VP+ Q
Sbjct: 539 DPTYTSATLLFQKDPPANIQLFQ-------------------------------EVPNGQ 567
Query: 534 AKSDLVGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALA 593
+K D VGRP+ H +A QA+GEA+YCDDIP+Y+ EL+L V S++ HAKI S+D S A
Sbjct: 568 SKEDTVGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQK 627
Query: 594 MEGVRGWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALV 653
+ G ++ D+PG G+ +D+ +FA+D VTCVG IG V+A+ A+RAA +V
Sbjct: 628 VPGFVCFLSADDIPGSNET--GLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVV 685
Query: 654 KVTYEELPAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYL 713
KVTYE+LPAI +I++AI++ SF+ +G++ + F + D+++ GE+ +GGQ+HFYL
Sbjct: 686 KVTYEDLPAIITIEDAIKNNSFY-GSELKIEKGDLKKGFSEADNVVSGELYIGGQDHFYL 744
Query: 714 ETNVSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKEKL 773
ET+ ++A+PK E+G ME+FVS+Q+ + Q A LGVP NRI+ + KR+GGGFGGKE
Sbjct: 745 ETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETR 804
Query: 774 QSEL 777
+ +
Sbjct: 805 STLV 808
Score = 69.5 bits (170), Expect = 4e-12
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 789 WIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKER 848
+IAE VA L + N++ G+LTH+NQ LE ++ RC+++ +S +Y R
Sbjct: 921 FIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQRLEGFSVPRCWDECLKSSQYYAR 980
Query: 849 RKQCEEFNR 857
+ + ++FN+
Sbjct: 981 KSEVDKFNK 989
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur,
oxidoreductase, purine metabolism, molybdenum cofactor,
hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter
capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Length = 462
Score = 444 bits (1144), Expect = e-148
Identities = 119/466 (25%), Positives = 183/466 (39%), Gaps = 85/466 (18%)
Query: 1 MHGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKD 60
+ G A+ T+EGI + +LHPVQ+ + HGSQCGFCTPG ++SM A KD
Sbjct: 70 IAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVSMAAAHD-----RDRKD 124
Query: 61 MEVALQGNLCRCTGYRPILEGFKTFTEEWERDRLTNGTNGINGSVQNGNGVCAMGENCCK 120
+ L GNLCRCTGY PIL + +
Sbjct: 125 YDDLLAGNLCRCTGYAPILRAAEAA--------------------------------AGE 152
Query: 121 NKKPGDEEEKEELFSPSEFTPYDKSQEPTFPPELQLNDTYDKEYLQIRGPRATWYRPQTL 180
+ + + ++ P +T
Sbjct: 153 PPADWLQADAAFTLAQLSSGVRGQTAPAFLP--------------------------ETS 186
Query: 181 TQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEENGVWIGGA 240
L + PEA L+ G +++ + V P + S +L Q R +G IG
Sbjct: 187 DALADWYLAHPEATLIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQIRETPDGYGIGAG 246
Query: 241 TSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMTGSPISDMN 300
++ +RA + A+ +L FA Q+R VA IGGNI GSPI D
Sbjct: 247 VTIAALRAFAEG-----------PHPALAGLLRRFASEQVRQVATIGGNIANGSPIGDGP 295
Query: 301 PILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAIYIPHTAETQYFKAY 360
P L+A L L + R + ++ F+ YRK RP E + ++ +P +A + Y
Sbjct: 296 PALIAMGASLTLRRG-QERRRMPLE-DFFLEYRKQDRRPGEFVESVTLPKSAP--GLRCY 351
Query: 361 KQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQMINKPWN 420
K ++R D DI+ V N+TL G+ ++ AFGGMA A +I + +
Sbjct: 352 KLSKRFDQDISAVCGCLNLTL----KGSKIETARIAFGGMAGVPKRAAAFEAALIGQDFR 407
Query: 421 QSLLEDTWRNLMADL-PLDHSAPGGMIQYRRSLTLSLFYKFYIAVS 465
+ + L D PL S YR + ++ ++ +S
Sbjct: 408 EDTIAAALPLLAQDFTPL--SDMRASAAYRMNAAQAMALRYVRELS 451
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine
oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE
I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B*
3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B*
Length = 305
Score = 402 bits (1034), Expect = e-134
Identities = 137/303 (45%), Positives = 200/303 (66%), Gaps = 3/303 (0%)
Query: 163 EYLQIRGPRATWYRPQTLTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLI 222
+ L+ G R TW + TL +LL+LKA+ PEAKLVVGN+EIG+E+KFK +P++I P+ I
Sbjct: 2 KQLRFEGERVTWIQASTLKELLDLKAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWI 61
Query: 223 PELTQPRVEENGVWIGGATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRN 282
PEL G+ G A +L+ + L E + KLP+ K+ V+ ++E L WFAG Q+++
Sbjct: 62 PELNAVEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKS 121
Query: 283 VAAIGGNIMTGSPISDMNPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEV 342
VA++GGNI+T SPISD+NP+ MA+ +L + S+ R V MD +F+ SYRK ++ P+E+
Sbjct: 122 VASLGGNIITASPISDLNPVFMASGTKLTIVSR-GTRRTVPMDHTFFPSYRKTLLGPEEI 180
Query: 343 LRAIYIPHTAETQYFKAYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAP 402
L +I IP++ E ++F A+KQA RR+DDIA V V VK+ +GGMA
Sbjct: 181 LLSIEIPYSREDEFFSAFKQASRREDDIAKVTCGMRVLFQ--PGSMQVKELALCYGGMAD 238
Query: 403 TTVLAKKTTEQMINKPWNQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYKFYI 462
T+ A KTT++ ++K WN+ LL+D L +L L APGGMI++RR+LTLS F+KFY+
Sbjct: 239 RTISALKTTQKQLSKFWNEKLLQDVCAGLAEELSLSPDAPGGMIEFRRTLTLSFFFKFYL 298
Query: 463 AVS 465
V
Sbjct: 299 TVL 301
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur,
oxidoreductase, purine metabolism, molybdenum cofactor,
hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter
capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Length = 777
Score = 349 bits (898), Expect = e-108
Identities = 90/239 (37%), Positives = 127/239 (53%), Gaps = 3/239 (1%)
Query: 539 VGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVR 598
VG+P+ H SA TG+A Y DD+P L+LAF +S++ A I +D GV
Sbjct: 3 VGKPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVI 62
Query: 599 GWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYE 658
D+P N + + A V VGQPI V A A+ AA ++TY
Sbjct: 63 AVFTAADLPHD-NDASPAPSPEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARITYA 121
Query: 659 ELPAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETNVS 718
PAI ++ +A+ S F P ++ RG+V+ H+ EG +GGQEHFYLE +
Sbjct: 122 PRPAILTLDQALAADSRFEGGPVIWARGDVETALAGAAHLAEGCFEIGGQEHFYLEGQAA 181
Query: 719 VAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKEKLQSEL 777
+A+P +G + I SSQHPSEIQ AHALG+ + + + +R+GGGFGGKE + L
Sbjct: 182 LALP--AEGGVVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKESQGNHL 238
Score = 58.4 bits (142), Expect = 7e-09
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 20/89 (22%)
Query: 789 WIAETMGHHVAQFLKLDYADFARSNL--------------------FVTGNLTHYNQVLE 828
E H+A+ + D A+ N THY Q +
Sbjct: 351 LGMERAIEHLARGMGRDPAELRALNFYDPPERGGLSAPPSPPEPIATKKTQTTHYGQEVA 410
Query: 829 HCTLGRCFEQVHESGKYKERRKQCEEFNR 857
C LG ++ +S + RR + +N
Sbjct: 411 DCVLGELVTRLQKSANFTTRRAEIAAWNS 439
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine
oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE
I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C*
3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C*
3sr6_C*
Length = 755
Score = 339 bits (872), Expect = e-104
Identities = 113/235 (48%), Positives = 166/235 (70%), Gaps = 3/235 (1%)
Query: 537 DLVGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEG 596
D VGRP+ H +A QA+GEA+YCDDIP+Y+ EL+L V S++ HAKI S+D S A + G
Sbjct: 1 DTVGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPG 60
Query: 597 VRGWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVT 656
++ D+PG G+ +D+ +FA+D VTCVG IG V+A+ A+RAA +VKVT
Sbjct: 61 FVCFLSADDIPGSNET--GLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVT 118
Query: 657 YEELPAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETN 716
YE+LPAI +I++AI++ SF+ +G++ + F + D+++ GE+ +GGQ+HFYLET+
Sbjct: 119 YEDLPAIITIEDAIKNNSFY-GSELKIEKGDLKKGFSEADNVVSGELYIGGQDHFYLETH 177
Query: 717 VSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKE 771
++A+PK E+G ME+FVS+Q+ + Q A LGVP NRI+ + KR+GGGFGGKE
Sbjct: 178 CTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKE 232
Score = 71.9 bits (177), Expect = 5e-13
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 789 WIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKER 848
+IAE VA L + N++ G+LTH+NQ LE ++ RC+++ +S +Y R
Sbjct: 351 FIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQRLEGFSVPRCWDECLKSSQYYAR 410
Query: 849 RKQCEEFNR 857
+ + ++FN+
Sbjct: 411 KSEVDKFNK 419
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium
ligand, iron, iron-sulfur, metal-binding,
oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium
barkeri}
Length = 425
Score = 284 bits (730), Expect = 6e-88
Identities = 71/246 (28%), Positives = 117/246 (47%), Gaps = 9/246 (3%)
Query: 539 VGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVR 598
+G+ V + ++ G A + D + LY S+ PHA+I+S+D S A A++GV
Sbjct: 8 LGKNKVKVDSLEKVMGTAKFAADYS-FPDMLYAGVFRSTVPHARIVSLDLSKARAIDGVE 66
Query: 599 GWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYE 658
+D +PG KN G II D+ D V G I V A+ + Q A + + YE
Sbjct: 67 AVLDYHAIPG-KNRFGIIIKDEPCLVDDKVRRYGDAIAVVAAQTPDLVQEALDAITIEYE 125
Query: 659 ELPAIFSIQEAIE------HKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFY 712
EL IF+++ A+E H + G+VD F + D ++E S H +
Sbjct: 126 ELEGIFTMERALEEDSPAIHGDTNIHQVKHLEYGDVDAAFKQCDIVVEDTYSTHRLTHMF 185
Query: 713 LETNVSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKEK 772
+E + V+ +G + + VS+Q+P + A L +P++++ GGGFGGK
Sbjct: 186 IEPDAGVSYYD-NEGMLTVVVSTQNPHYDRGEVAGMLALPNSKVRIIQATTGGGFGGKLD 244
Query: 773 LQSELY 778
L + +
Sbjct: 245 LSVQCH 250
Score = 42.9 bits (102), Expect = 4e-04
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 789 WIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHC-----TLGRCFEQVHESG 843
E + +A+ L +D D N G QVLE+ TL + E+ E
Sbjct: 360 VCHEGQMNALAKALGMDPIDIRILNAHQVGAKLATGQVLENSVGLIETLEKAREKAVEVM 419
Query: 844 KYKERR 849
Y++ R
Sbjct: 420 GYEKTR 425
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A
{Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1
d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Length = 907
Score = 294 bits (755), Expect = 1e-86
Identities = 78/291 (26%), Positives = 111/291 (38%), Gaps = 21/291 (7%)
Query: 507 SLIRDLADALPPSLTRLAPYFQVPSTQAKSDLVGRPIVHASAFKQATGEAIYCDDI--PK 564
L+ + DA + A + G +A + TG Y D+
Sbjct: 144 PLVDAVMDAAAVINGKKPETDLEFKMPADGRIWGSKYPRPTAVAKVTGTLDYGADLGLKM 203
Query: 565 YQTELYLAFVVSSKPHAKILSVDPSAALAMEGVRGWVDERDVPGQKNYVGGIIH------ 618
L+LA V + HA I +D S AL M GV + +DV G KN + G+I
Sbjct: 204 PAGTLHLAMVQAKVSHANIKGIDTSEALTMPGVHSVITHKDVKG-KNRITGLITFPTNKG 262
Query: 619 ---DDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYEELPAIFSIQEAIEHKSF 675
D I + V G I V A+ + A+ AA VKV EELPA S A +
Sbjct: 263 DGWDRPILCDEKVFQYGDCIALVCADSEANARAAAEKVKVDLEELPAYMSGPAAAAEDAI 322
Query: 676 F-------NLEPSVYGRG-NVDEEFLKVDHILEGEVSVGGQEHFYLETNVSVAVPKLEDG 727
+G + F D +EG+ VG Q H +E +V+ A +DG
Sbjct: 323 EIHPGTPNVYFEQPIVKGEDTGPIFASADVTVEGDFYVGRQPHMPIEPDVAFAYMG-DDG 381
Query: 728 CMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKEKLQSELY 778
I S M A +G+ +++V +GG FG K SE
Sbjct: 382 KCYIHSKSIGVHLHLYMIAPGVGLEPDQLVLVANPMGGTFGYKFSPTSEAL 432
Score = 130 bits (329), Expect = 4e-31
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Query: 2 HGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDM 61
G +TT+EG+G + LHP+Q+ G+QCGFC+PG ++S LL + P+ +D+
Sbjct: 69 DGAQITTIEGVGQPE-NLHPLQKAWVLHGGAQCGFCSPGFIVSAKGLLDTNA-DPSREDV 126
Query: 62 EVALQG--NLCRCTGYRPILEGFKTF 85
Q N CRCTGY+P+++
Sbjct: 127 RDWFQKHRNACRCTGYKPLVDAVMDA 152
Score = 52.3 bits (126), Expect = 7e-07
Identities = 11/63 (17%), Positives = 25/63 (39%)
Query: 789 WIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKER 848
+ +E + +A+ L +D + N + G+ Q E +L +Q+ +
Sbjct: 542 FASECLMDMLAEKLGMDPLELRYKNAYRPGDTNPTGQEPEVFSLPDMIDQLRPKYQAALE 601
Query: 849 RKQ 851
+ Q
Sbjct: 602 KAQ 604
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta
barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans}
SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Length = 907
Score = 283 bits (727), Expect = 9e-83
Identities = 69/293 (23%), Positives = 100/293 (34%), Gaps = 23/293 (7%)
Query: 507 SLIRDLADALPPSLTRLAPYFQVPSTQAKSDLVGRPIVHASAFKQATGEAIYCDDIPKYQ 566
L+ + DA A + G I SA + TG A + D
Sbjct: 144 PLVDAVMDAAAILRGEKTVEEISFKMPADGRIWGSSIPRPSAVAKVTGLAEFGADAALRM 203
Query: 567 TE--LYLAFVVSSKPHAKILSVDPSAALAMEGVRGWVDERDVPGQKNYVGGII------- 617
E L+LA + HA I +D S A M GV + +DV G KN + G+I
Sbjct: 204 PENTLHLALAQAKVSHALIKGIDTSEAEKMPGVYKVLTHKDVKG-KNRITGLITFPTNKG 262
Query: 618 --HDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYEELPAIFSIQEAIEHKSF 675
+ I + G + V A+ + A+ AA VK E LP S EA+ +
Sbjct: 263 DGWERPILNDSKIFQYGDALAIVCADSEANARAAAEKVKFDLELLPEYMSAPEAMAPDAI 322
Query: 676 F-------NLEPSVYGRGNVDEEFL--KVDHILEGEVSVGGQEHFYLETNVSVAVPKLED 726
+ +G F + + EG Q H +E +V E
Sbjct: 323 EIHPGTPNVYYDQLEEKGEDTVPFFNDPANVVAEGSYYTQRQPHLPIEPDVGYGYIN-EQ 381
Query: 727 GCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTK-RLGGGFGGKEKLQSELY 778
G + I S M A LG+ + + + GG FG K E
Sbjct: 382 GQVVIHSKSVAIHLHALMIAPGLGLEFPKDLVLVQNTTGGTFGYKFSPTMEAL 434
Score = 131 bits (332), Expect = 1e-31
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 2 HGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDM 61
+VTT+EGIG+ LHP+Q + +QCGFCTPG ++S ALL P+ +D+
Sbjct: 69 ENASVTTLEGIGAPD-CLHPLQHAWIQHGAAQCGFCTPGFIVSAKALLDENV-APSREDV 126
Query: 62 EVALQG--NLCRCTGYRPILEGFKTFTE 87
Q N+CRCTGY+P+++
Sbjct: 127 RDWFQKHHNICRCTGYKPLVDAVMDAAA 154
Score = 50.7 bits (122), Expect = 2e-06
Identities = 12/61 (19%), Positives = 29/61 (47%)
Query: 789 WIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKER 848
+ +E + +A+ L +D + N + G+ T Q+ E +L F+++ + ++
Sbjct: 544 FPSEVLMDELAEKLGMDPFELRALNCYREGDTTSSGQIPEVMSLPEMFDKMRPYYEESKK 603
Query: 849 R 849
R
Sbjct: 604 R 604
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron,
iron-sulfur, metal-binding, oxidoreductase; HET: MCN
FAD; 2.20A {Eubacterium barkeri}
Length = 296
Score = 209 bits (535), Expect = 1e-61
Identities = 61/296 (20%), Positives = 117/296 (39%), Gaps = 26/296 (8%)
Query: 174 WYRPQTLTQLLELKAKFPE--AKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVE 231
++ P+TL + L ++ + ++ G +++ +E+ + V+I + EL RVE
Sbjct: 6 FFAPKTLEEAKGLLHQYKDVPPAIIAGGTDLVIEINDRWEKPDVVIDIKKLKELEYIRVE 65
Query: 232 ENGVWIGGATSLNDMRAILSEQI-EKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNI 290
EN + IG ++ + I + A+ + QIRN+ IGGN+
Sbjct: 66 ENTIHIGALSTFTQIEN--HPFIRSHVR--------ALYKAASQVGSPQIRNLGTIGGNL 115
Query: 291 MTGSPISDMNPILMAARCRLLLESKAEGTREVTMDGSFYT---SYRKNIVRPDEVLRAIY 347
T S D + ++LES GTR++ + F+ R+N + DE++ +
Sbjct: 116 STSSVAGDGVSAMTTLDATVVLES-VRGTRQMKLT-DFFDGEGFKRRNALEADEIMTEVI 173
Query: 348 IPHTAETQYFKAYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLA 407
I YK A+R+ I+++ V +D D V G + +
Sbjct: 174 IDRPDAHSASAFYKLAKRKSLAISVIGGGMAVKVD---DAGVCTWASMRGGCIGRYPLHF 230
Query: 408 KKTTEQMINKPWNQSLLEDTWRNLMADL-PL-DHSAPGGMIQYRRSLTLSLFYKFY 461
K+ E ++ P +E T L + + Y++ +F K +
Sbjct: 231 KQAEEMLVGAPLTMETMEATLPILHDTVYDMARARPSV---LYKKESVQGVFKKLF 283
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase
family, dimer heterotrimers, oxidoreductase; HET: PCD
FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1
d.133.1.1 PDB: 1sb3_A*
Length = 769
Score = 197 bits (503), Expect = 3e-53
Identities = 72/246 (29%), Positives = 108/246 (43%), Gaps = 10/246 (4%)
Query: 539 VGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVR 598
VG ++ TG+A Y DI L + S HA+IL++D SAA A+EGV
Sbjct: 11 VGVRTPLVDGVEKVTGKAKYTADI-AAPDALVGRILRSPHAHARILAIDTSAAEALEGVI 69
Query: 599 GWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYE 658
+ P V I ++ ARD V G P+ V A D++ A++A AL+KV YE
Sbjct: 70 AVCTGAETPV-PFGVLPIAENEYPLARDKVRYRGDPVAAVAAIDEVTAEKALALIKVDYE 128
Query: 659 ELPAIFSIQEAIE------HKSFFN--LEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEH 710
LPA + + A++ H N L G+V F + D I E + H
Sbjct: 129 VLPAYMTPKAAMKAGAIALHDDKPNNILREVHAEFGDVAAAFAEADLIREKTYTFAEVNH 188
Query: 711 FYLETNVSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGK 770
++E N ++A + + ++Q P + A L + S RI LGGGFG +
Sbjct: 189 VHMELNATLAEYDPVRDMLTLNTTTQVPYYVHLKVAACLQMDSARIRVIKPFLGGGFGAR 248
Query: 771 EKLQSE 776
+
Sbjct: 249 TEALHF 254
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD;
HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1
d.145.1.3
Length = 288
Score = 185 bits (472), Expect = 5e-53
Identities = 51/283 (18%), Positives = 106/283 (37%), Gaps = 25/283 (8%)
Query: 173 TWYRPQTLTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEE 232
++ P +L +++++ A P+A+++ G + + F+ + L+ + EL +
Sbjct: 7 SYRAPASLQEVIQVLADDPDARIIAGGQSLLPLLAFRLVYPSCLVDLRNVSELFEISQSA 66
Query: 233 NGVWIGGATSLNDMRAILSEQI-EKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIM 291
+ +G + + + + +P + ++L A +RN +GG++
Sbjct: 67 GILSVGAMVTHFRNKT--DPTVAKCVP--------ILPKVLAHVAHQAVRNRGTLGGSLA 116
Query: 292 TGSPISDMNPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAIYIPHT 351
++M ++ + + S + G R V+ F + + EVL + IP
Sbjct: 117 HADAGAEMPFLMATLGATMYIAS-SAGVRSVSATD-FMKGHYFTDLEAGEVLVRVEIPIP 174
Query: 352 AETQYFKAYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTT 411
A F Y RR D A+V AA +++ G A G + A +
Sbjct: 175 ALHWEFDEYA---RRKGDYALVMAAAGLSM----QGGRCVAARIALGAVEERAHQAIRAN 227
Query: 412 EQMINKPWNQSLLEDTWRNLMADL-PL-DHSAPGGMIQYRRSL 452
+ ++ K ++S L P D R SL
Sbjct: 228 DFLVGKVIDESTAATAAELATEGLEPRSDIHGSR---DLRLSL 267
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine
oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A
{Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A*
3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Length = 164
Score = 178 bits (455), Expect = 2e-52
Identities = 66/87 (75%), Positives = 80/87 (91%), Gaps = 1/87 (1%)
Query: 1 MHGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKD 60
+H +AVTTVEGIGSTKT+LHPVQER+AK+HGSQCGFCTPGIVMSMY LLR+ P +PT+++
Sbjct: 79 LHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQP-EPTVEE 137
Query: 61 MEVALQGNLCRCTGYRPILEGFKTFTE 87
+E A QGNLCRCTGYRPIL+GF+TF +
Sbjct: 138 IEDAFQGNLCRCTGYRPILQGFRTFAK 164
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum,
molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A
{Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3
PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C*
Length = 288
Score = 179 bits (456), Expect = 8e-51
Identities = 66/283 (23%), Positives = 111/283 (39%), Gaps = 24/283 (8%)
Query: 174 WYRPQTLTQLLELKAKF-PEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEE 232
++RP+++ + L K +A+ + G + +K + L+ I +L R E
Sbjct: 8 YHRPKSIADAVALLTKLGEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGIREEG 67
Query: 233 NGVWIGGATSLNDMRAILSEQI-EKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIM 291
V IG T+ + + S+ + KLP I E A QIR + IGGN
Sbjct: 68 TDVVIGAMTTQHALIG--SDFLAAKLP--------IIRETSLLIADPQIRYMGTIGGNAA 117
Query: 292 TGSPISDMNPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAIYIPHT 351
G P +DM ++ L EG R V +Y + P E+L AI IP
Sbjct: 118 NGDPGNDMPALMQCLGAAYELTG-PEGARIVAARD-YYQGAYFTAIEPGELLTAIRIPVP 175
Query: 352 AETQYFKAYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTT 411
+ AY++ +R+ D A AA +T+ G +A T + A++
Sbjct: 176 PTGHGY-AYEKLKRKIGDYATAAAAVVLTM----SGGKCVTASIGLTNVANTPLWAEEAG 230
Query: 412 EQMINKPWNQSLLEDTWRNLMADL-PL-DHSAPGGMIQYRRSL 452
+ ++ ++ L+ A P D P +YR +
Sbjct: 231 KVLVGTALDKPALDKAVALAEAITAPASDGRGPA---EYRTKM 270
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD;
HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1
d.133.1.1
Length = 788
Score = 188 bits (481), Expect = 4e-50
Identities = 64/255 (25%), Positives = 110/255 (43%), Gaps = 21/255 (8%)
Query: 539 VGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVR 598
+G ++ + TG Y D+ L++A + S HA+I+S+D + A A+ GV
Sbjct: 14 IGTSVLRREDTRLLTGRGRYIADL-VLSGMLHVASLRSPFAHARIVSIDVADAQALPGVE 72
Query: 599 GWVDERDVPGQKNYVGGIIH-------DDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAA 651
DV + + + A V VG+ + V+A + IA+ AA
Sbjct: 73 LVWCGADVAELSQGIVATMQVEGFQTTIQPLLANGVTRFVGEIVAVVVASSRAIAEDAAQ 132
Query: 652 LVKVTYEELPAIFSIQEAIEHKS----------FFNLEPSVYGRGNVDEEFLKVDHILEG 701
L++V YEELPA+ I+ A+E ++ R + F ++ G
Sbjct: 133 LIQVEYEELPAVTGIEAALEGEARANDTLAGNVVSRTS---RARDELAPIFASSAGVVRG 189
Query: 702 EVSVGGQEHFYLETNVSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTK 761
+ S G +ET +VA + + ++ ++Q PS ++ M A +P + I +
Sbjct: 190 QFSCGRVSACPMETRGAVAQYEWTTQQLILWTATQMPSFVRTMVAMFCAIPEHLIEVRVP 249
Query: 762 RLGGGFGGKEKLQSE 776
+GGGFG K L E
Sbjct: 250 DVGGGFGQKAHLHPE 264
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase;
HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava}
SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C*
Length = 287
Score = 174 bits (443), Expect = 5e-49
Identities = 68/282 (24%), Positives = 119/282 (42%), Gaps = 24/282 (8%)
Query: 175 YRPQTLTQLLELKAKF-PEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEEN 233
+ P+++ + + L + +AKL+ G + +K + LI + IPEL R E +
Sbjct: 9 HAPKSVGEAVALLGQLGSDAKLLAGGHSLLPMMKLRFAQPEHLIDINRIPELRGIREEGS 68
Query: 234 GVWIGGATSLNDMRAILSEQI-EKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMT 292
V IG T ND+ + S + +LP + E A Q+RN IGG+I
Sbjct: 69 TVVIGAMTVENDLIS--SPIVQARLP--------LLAEAAKLIADPQVRNRGTIGGDIAH 118
Query: 293 GSPISDMNPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAIYIPHTA 352
G P +D + +A +LE G R V DG F+ ++ +EV+ I +P A
Sbjct: 119 GDPGNDHPALSIAVEAHFVLEG-PNGRRTVPADG-FFLGTYMTLLEENEVMVEIRVPAFA 176
Query: 353 ETQYFKAYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTE 412
+ + AY++ +R+ D A A + G V A +APT + A+
Sbjct: 177 QGTGW-AYEKLKRKTGDWATAGCAVVMRK----SGNTVSHIRIALTNVAPTALRAEAAEA 231
Query: 413 QMINKPWNQSLLEDTWRNLMADL-PL-DHSAPGGMIQYRRSL 452
++ K + + ++ +A P D Y+ ++
Sbjct: 232 ALLGKAFTKEAVQAAADAAIAICEPAEDLRGDA---DYKTAM 270
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase;
HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava}
SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Length = 803
Score = 181 bits (462), Expect = 8e-48
Identities = 61/276 (22%), Positives = 106/276 (38%), Gaps = 24/276 (8%)
Query: 524 APYFQVPSTQAKSDLVGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKI 583
AP + + +G + + G+ Y DDI K L++ V + H +I
Sbjct: 3 APVQDAEARELALAGMGASRLRKEDARFIQGKGNYVDDI-KMPGMLHMDIVRAPIAHGRI 61
Query: 584 LSVDPSAALAMEGVRGWVDERDVPGQKNYVGGIIHDDV--IFARDVVTCVGQPIGGVIAE 641
+ AALAM GV + D+ K + + DV + A + V Q + VIA+
Sbjct: 62 KKIHKDAALAMPGVHAVLTAEDLKPLKLHWMPTLAGDVAAVLADEKVHFQMQEVAIVIAD 121
Query: 642 DQLIAQRAAALVKVTYEELPAIFSIQEAIE----------------HKSFFNLEPSVY-- 683
D+ IA A VKV Y+ELP + +A++ ++
Sbjct: 122 DRYIAADAVEAVKVEYDELPVVIDPIDALKPDAPVLREDLAGKTSGAHGPREHHNHIFTW 181
Query: 684 ---GRGNVDEEFLKVDHILEGEVSVGGQEHFYLETNVSVAVPKLEDGCMEIFVSSQHPSE 740
+ D F + + LET VA G + +++SQ P
Sbjct: 182 GAGDKAATDAVFANAPVTVSQHMYYPRVHPCPLETCGCVASFDPIKGDLTTYITSQAPHV 241
Query: 741 IQEMTAHALGVPSNRIVAKTKRLGGGFGGKEKLQSE 776
++ + + G+P +++ + +GGGFG K +
Sbjct: 242 VRTVVSMLSGIPESKVRIVSPDIGGGFGNKVGIYPG 277
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum,
molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A
{Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1
PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Length = 809
Score = 180 bits (458), Expect = 4e-47
Identities = 65/301 (21%), Positives = 112/301 (37%), Gaps = 36/301 (11%)
Query: 539 VGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVR 598
+G + G+ Y DD+ K L+ FV SS HA+I S+D S A A+ GV
Sbjct: 21 MGCKRKRVEDIRFTQGKGNYVDDV-KLPGMLFGDFVRSSHAHARIKSIDTSKAKALPGVF 79
Query: 599 GWVDERDVPGQKNYVGGII--HDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVT 656
+ D+ + + + A + V Q + V+A+D+ +A A LV+V
Sbjct: 80 AVLTAADLKPLNLHYMPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVD 139
Query: 657 YEELPAIFSIQEAIE------HKSFFNLEPSVYG---------------RGNVDEEFLKV 695
YE LP + +A+E + + +G + D F K
Sbjct: 140 YEPLPVLVDPFKAMEPDAPLLREDIKDKMTGAHGARKHHNHIFRWEIGDKEGTDATFAKA 199
Query: 696 DHILEGEVSVGGQEHFYLETNVSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNR 755
+ + + + LET VA G + ++ + Q P I+ + + G+P ++
Sbjct: 200 EVVSKDMFTYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHK 259
Query: 756 IVAKTKRLGGGFGGKEKLQSELYGL------------FTEVREDDWIAETMGHHVAQFLK 803
I +GGGFG K S + E R ++ + +
Sbjct: 260 IHVIAPDIGGGFGNKVGAYSGYVCAVVASIVLGVPVKWVEDRMENLSTTSFARDYHMTTE 319
Query: 804 L 804
L
Sbjct: 320 L 320
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum,
molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A
{Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2
PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Length = 166
Score = 113 bits (284), Expect = 4e-29
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 2 HGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDM 61
+G ++TT+EG+ + L +QE HG QCG+CTPG++M + LL+ P PT ++
Sbjct: 70 NGASITTIEGMAAPDGTLSALQEGFRMMHGLQCGYCTPGMIMRSHRLLQENP-SPTEAEI 128
Query: 62 EVALQGNLCRCTGYRPILE 80
+ GNLCRCTGY+ I++
Sbjct: 129 RFGIGGNLCRCTGYQNIVK 147
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase
family, dimer heterotrimers, oxidoreductase; HET: PCD
FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1
d.145.1.3 PDB: 1sb3_B*
Length = 324
Score = 115 bits (291), Expect = 2e-28
Identities = 51/323 (15%), Positives = 95/323 (29%), Gaps = 65/323 (20%)
Query: 173 TWYRPQTLTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEE 232
+RP TL + A + +++ ++ L+ + I L
Sbjct: 8 RTHRPATLADAVNALAA-EATLPLGAGTDLLPNLRRGLGHPAALVDLTGIDGLATISTLA 66
Query: 233 NG-VWIGGATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIM 291
+G + IG +L + + I + A+ + AG R A +GGN+
Sbjct: 67 DGSLRIGAGATLEAIAE--HDAIR-------TTWPALAQAAESVAGPTHRAAATLGGNLC 117
Query: 292 TGSPI--------------------------------------SDMNPILMAARCRLLLE 313
+ D+ P LM R +
Sbjct: 118 QDTRCTFYNQSEWWRSGNGYCLKYKGDKCHVIVKSDRCYATYHGDVAPALMVLDARAEIV 177
Query: 314 SKAEGTREVTMDGSFYTSY--RKNIVRPDEVLRAIYIPHTAETQYFKAY-KQARRRDDDI 370
G R V + + + E+L AI +P T AY K R D
Sbjct: 178 G-PAGKRTVPVA-QLFRESGAEHLTLEKGELLAAIEVPPTGAWSA--AYSKVRIRDAVDF 233
Query: 371 AIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQMINKPWNQSLLEDTWRN 430
+ A + DG + A G ++ + ++ W+ + E +
Sbjct: 234 PLAGVAAALQR----DGDRIAGLRVAITGSNSAPLMV--PVDALLGGNWDDAAAETLAQL 287
Query: 431 LMADL-PLDHSAPGGMIQYRRSL 452
+ L + ++YRR +
Sbjct: 288 VRKTSNVLRTTI--TGVKYRRRV 308
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron,
iron-sulfur, metal-binding, oxidoreductase; HET: MCN
FAD; 2.20A {Eubacterium barkeri}
Length = 160
Score = 109 bits (274), Expect = 9e-28
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 2 HGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDM 61
+ T+EG+ K +Q+ +A QCG+CTPG++++ ALL P PT +++
Sbjct: 70 DESTIITLEGVAEDG-KPSLLQQCFLEAGAVQCGYCTPGMILTAKALLDKNP-DPTDEEI 127
Query: 62 EVALQGNLCRCTGYRPILE 80
VA+ GNLCRCTGY I
Sbjct: 128 TVAMSGNLCRCTGYIKIHA 146
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase
family, dimer heterotrimers, oxidoreductase; HET: PCD
FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1
d.15.4.2 PDB: 1sb3_C*
Length = 161
Score = 108 bits (273), Expect = 1e-27
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 2 HGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDM 61
G V TVE + T+ L +Q + G+QCGFCTPG++M+ ALLR P P+ ++
Sbjct: 69 AGKKVETVESLA-TQGTLSKLQAAFHEKLGTQCGFCTPGMIMASEALLRKNP-SPSRDEI 126
Query: 62 EVALQGNLCRCTGYRPILE 80
+ AL GNLCRCTGY I++
Sbjct: 127 KAALAGNLCRCTGYVKIIK 145
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase;
hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga
pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Length = 163
Score = 108 bits (272), Expect = 2e-27
Identities = 39/79 (49%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 2 HGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDM 61
G V TVEG+ K LH VQE K HG QCGFCTPG++M Y L+ P PT ++
Sbjct: 70 DGSEVLTVEGLA-NKGVLHAVQEGFYKEHGLQCGFCTPGMLMRAYRFLQENP-NPTEAEI 127
Query: 62 EVALQGNLCRCTGYRPILE 80
+ + GNLCRCTGY+ I++
Sbjct: 128 RMGMTGNLCRCTGYQNIVK 146
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD;
HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1
d.15.4.2
Length = 168
Score = 107 bits (270), Expect = 4e-27
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 2 HGLAVTTVEGIGSTKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDM 61
G ++ TVEG+ KL+ +Q+ + H QCGFCT G++ + ++L P P+ ++
Sbjct: 76 EGCSIETVEGLS-QGEKLNALQDSFRRHHALQCGFCTAGMLATARSILAENP-APSRDEV 133
Query: 62 EVALQGNLCRCTGYRPILE 80
+ GNLCRCTGY I++
Sbjct: 134 REVMSGNLCRCTGYETIID 152
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.4 bits (135), Expect = 4e-08
Identities = 81/610 (13%), Positives = 168/610 (27%), Gaps = 180/610 (29%)
Query: 351 TAETQYFKAYKQARRRDDDIAIVNA-AFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKK 409
T E QY YK DI V AF D + V+D P ++L+K+
Sbjct: 11 TGEHQY--QYK-------DILSVFEDAFVDNFDCKD----VQD--------MPKSILSKE 49
Query: 410 TTEQMINKP----------WN-------------QSLLEDTWRNLMADLPLDHSAPGGM- 445
+ +I W + +L ++ LM+ + + P M
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 446 ---IQYRRSL--TLSLFYKFYIAVSVDTQVTPISS-----RD-------------KS--G 480
I+ R L +F K+ VS + R K+
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYN--VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 481 AQTFHTLPTKSSQYFQVFRVKSGPGGSLIRDLADALPPSLTRLAPYFQV-PSTQAKSDLV 539
+ + F++F + + + + L +L +Q+ P+ ++SD
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKN-----CNSPETVLEMLQKL--LYQIDPNWTSRSDHS 220
Query: 540 GRPIVHASAFKQAT----GEAIYC------DDIPKYQTELYLAFVVSSKPHAKIL--SVD 587
+ + + Y ++ + + AF +S K IL +
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QNAKAWNAFNLSCK----ILLTTRF 274
Query: 588 PSAALAMEGVRGWVDERDVPGQKNYVGGIIHDDV--IFARDVVTCVGQPIGGVIAEDQLI 645
+ ++ + D+V + + + + E
Sbjct: 275 KQVTDFLSAAT-----TTHISLDHHSMTLTPDEVKSLLLK----YLDCRPQDLPREVLTT 325
Query: 646 AQRAAALV---------------KVTYEELPAIFSI----QEAIEHKSFFN----LEPSV 682
R +++ V ++L I E E++ F+ PS
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 683 YGRGNVDEEFLKVDHILEGEVSVGGQEHFYLE-TNVSVAVPKLEDGCMEI----FVSSQH 737
++ L ++ +V + S+ + ++ + I
Sbjct: 386 ----HIPTILLS---LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 738 PSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKEKLQSELYGLFTEVREDDWIAETMGHH 797
+ H IV + + S+ D + +GHH
Sbjct: 439 LENEYAL--H------RSIVDH-------YNIPKTFDSDD---LIPPYLDQYFYSHIGHH 480
Query: 798 VAQ---------FLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKER 848
+ F + + DF F+ + H + G + + YK
Sbjct: 481 LKNIEHPERMTLFRMV-FLDFR----FLEQKIRHDS--TAWNASGSILNTLQQLKFYKPY 533
Query: 849 -RKQCEEFNR 857
++ R
Sbjct: 534 ICDNDPKYER 543
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 8e-08
Identities = 75/510 (14%), Positives = 145/510 (28%), Gaps = 188/510 (36%)
Query: 125 GDEEE--KEELFSPSEFTPY-----DKSQEPTFPPELQLN-DTYDKEYLQ---------- 166
D+E EL +F Y + S+ F L L ++ YL+
Sbjct: 50 ADDEPTTPAELVG--KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 167 ---------------IRGPRATWYRPQTLTQ----------LLELKAKFPEAKLVV---- 197
I+ + + + + L A+LV
Sbjct: 108 LLQENDTTLVKTKELIK----NYITARIMAKRPFDKKSNSALFR-AVGEGNAQLVAIFGG 162
Query: 198 -GNSEIGVEVKFKKFF--YPVLIQPSLIPELTQPRVEENGVWIGGATSLNDMRAILSEQI 254
GN++ E + + + Y VL+ LI LSE +
Sbjct: 163 QGNTDDYFE-ELRDLYQTYHVLVGD-LI---------------------KFSAETLSE-L 198
Query: 255 EKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAI-GGNIMTGSPISDMNPILMAARCRLLLE 313
+ +V+ + +L W + N + + + PIS I + ++
Sbjct: 199 IRTTLDAEKVFTQGLNILEW-----LENPSNTPDKDYLLSIPIS-CPLIGVIQLAHYVVT 252
Query: 314 SKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAIYIPHTAETQYFKAYKQARRRDDDIAIV 373
+K G G + + ++ A+ I T + F + R+ +
Sbjct: 253 AKLLGFTP----GELRSYLKGATGHSQGLVTAVAIAETDSWESF--FVSVRK------AI 300
Query: 374 NAAF-----------NVTLDIQSDGAVVKDCEFAFGGMAPTTVLA-----KKTTEQMINK 417
F N +L ++++D P+ +L+ ++ + +NK
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPP----SILEDSL-ENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 418 PWNQSLLEDTW---------RNL-MADLPLD----------HSAPGGMIQYR-----RSL 452
N L +NL ++ P AP G+ Q R R L
Sbjct: 356 T-NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 453 TLSLFYKFYIAVSVDTQVTPISSRDKSGAQTFHT-------------LPTKSSQY----- 494
S + P++S FH+ L + +
Sbjct: 415 KFS------------NRFLPVASP-------FHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 495 -FQVFRVKSGPGGSLIRDLADALPPSLTRL 523
V+ G S +R L+ ++ +
Sbjct: 456 QIPVYDTFDG---SDLRVLSGSISERIVDC 482
Score = 53.5 bits (128), Expect = 3e-07
Identities = 117/647 (18%), Positives = 192/647 (29%), Gaps = 220/647 (34%)
Query: 259 SHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMTGSPISDMNPILMAARCRLLLESKAEG 318
SH S +V +V +F +Q++ T +D P + AE
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT-----------TPAE- 59
Query: 319 TREVTMDGSF--YTSYR---KNIVRPDEVLRAIYIPHTAETQYFKAYKQARRRDDDI-AI 372
+ G F Y S + + D+VL E Y +DI A+
Sbjct: 60 -----LVGKFLGYVSSLVEPSKVGQFDQVLNLCL--TEFENCYL--------EGNDIHAL 104
Query: 373 VNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQMINKPWNQSLLEDTWRN-- 430
L ++D +VK E + + A+ ++ +K N +L
Sbjct: 105 A-----AKLLQENDTTLVKTKE-----LIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 431 -LMADLPLDHSAPGGMIQ-----YRRSLT-LSLFYKFYIAVSVDTQVTPISSRDKSGAQT 483
L+A GG Q Y L Y+ Y V + A+T
Sbjct: 155 QLVAIF-------GG--QGNTDDY---FEELRDLYQTY-----HVLVGDLIKF---SAET 194
Query: 484 FHTL---PTKSSQYF-QVFRVKS---GPGGSLIRD-LADALPPS-----LTRLAPYFQV- 529
L + + F Q + P + +D L P S + +LA Y
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI-PISCPLIGVIQLAHYVVTA 253
Query: 530 -----------PSTQAKSDLVGRPIVHASAFKQA-TGEAIYCDDIPKYQTELYL------ 571
+ + + +V A A + + E+ + + K T L+
Sbjct: 254 KLLGFTPGELRSYLKGAT-GHSQGLVTAVAIAETDSWESFF-VSVRKAITVLFFIGVRCY 311
Query: 572 -AFVVSSKPHAKIL--SVD-----PSAALAMEG-----VRGWVDE--RDVPGQKNYVGGI 616
A+ +S P IL S++ PS L++ V+ +V++ +P K
Sbjct: 312 EAYPNTSLP-PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ----- 365
Query: 617 IHDDVIFARD--VVTCVGQPIG--GVIAEDQLIAQRAAALVKVTYEELPAIFSIQEAIEH 672
+ ++ VV+ G P G+ L ++A A + +P FS E
Sbjct: 366 VEISLVNGAKNLVVS--GPPQSLYGL----NLTLRKAKAPSGLDQSRIP--FS-----ER 412
Query: 673 KSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHF---YLETNVSVAVPKLEDGCM 729
K R FL V+ F L A + +
Sbjct: 413 K------LKFSNR------FL--------PVAS----PFHSHLLVP----ASDLINKDLV 444
Query: 730 EIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKEKLQSELYGLFTEVRED-- 787
+ V A + +P V T F G + L+ L + E
Sbjct: 445 KNNV---------SFNAKDIQIP----VYDT------FDGSD-LRV----LSGSISERIV 480
Query: 788 --------DWIAETMG--HHVAQFLKLDYADFARSNLFVTGNLTHYN 824
W T H+ L DF G LTH N
Sbjct: 481 DCIIRLPVKWETTTQFKATHI---L-----DFGPGGASGLGVLTHRN 519
Score = 47.7 bits (113), Expect = 2e-05
Identities = 48/243 (19%), Positives = 77/243 (31%), Gaps = 75/243 (30%)
Query: 488 PTKSSQYFQVFRVKSGPGGSLIRDLADAL-----PPSLTRLAPYFQVPSTQAKSDLVGRP 542
P + +F G G IR+ A+ + F+ + + S
Sbjct: 1669 PVNLTIHF------GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE 1722
Query: 543 --IVHASAFKQ----ATGEAIYCD-----DIPKYQT-------ELYLAFVVSSKPHAKIL 584
++ A+ F Q +A + D IP T E Y A A ++
Sbjct: 1723 KGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE-YAALASL----ADVM 1777
Query: 585 SVDPSAALAMEGV--RG----WVDERDVPGQKNY---------VGGIIHDDVIFARDVVT 629
S++ + V RG RD G+ NY V + + + VV
Sbjct: 1778 SIESLVEV----VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL--QYVVE 1831
Query: 630 CVGQPIGGV--IA----EDQ--LIAQRAAAL------------VKVTYEELPAIFSIQEA 669
VG+ G + I E+Q + A AL K+ EL S++E
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Query: 670 IEH 672
H
Sbjct: 1892 EGH 1894
Score = 45.0 bits (106), Expect = 1e-04
Identities = 53/313 (16%), Positives = 101/313 (32%), Gaps = 101/313 (32%)
Query: 517 PPSLT--RLAPYFQVPSTQAKSDLVGRPIVHAS----AFK----QATGEAIYCDDIPKYQ 566
P +L+ L VP+ AS F + T E DD P
Sbjct: 8 PLTLSHGSLEHVLLVPTASF---------FIASQLQEQFNKILPEPT-EGFAADDEPTTP 57
Query: 567 TEL---YLAFVVSSKPHAKILSVDPSAALAMEGVRGWVDERDVPGQKNYVGGI-IH---- 618
EL +L +V S +K+ D L + E Y+ G IH
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF-----ENC------YLEGNDIHALAA 106
Query: 619 -------DDVIFARDVVTC-------VGQPIGGVIAEDQL---IAQRAAALVKV------ 655
++ ++++ +P + L + + A LV +
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKK-SNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 656 --TY-EELPAIFS-----IQEAIE--HKSFFNL------EPSVYGRGNVDEEFLKVDHIL 699
Y EEL ++ + + I+ ++ L V+ +G L + L
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG------LNILEWL 219
Query: 700 EGEVSVGGQEHFYLETNVSVAVP-----KLEDGCMEIF--VSSQHPSEIQE----MTAHA 748
E + ++ YL + + ++ P +L + + P E++ T H+
Sbjct: 220 ENPSNTPDKD--YLLS-IPISCPLIGVIQL--AHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 749 LGVPSNRIVAKTK 761
G+ + +A+T
Sbjct: 275 QGLVTAVAIAETD 287
Score = 39.6 bits (92), Expect = 0.005
Identities = 24/124 (19%), Positives = 35/124 (28%), Gaps = 48/124 (38%)
Query: 277 GNQIR-NVAAIGGNIMTGSPISDMNPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKN 335
G +IR N +A M I D + + + E + T
Sbjct: 1681 GKRIRENYSA-----MIFETIVDGKL-----KTEKIFKEINEHSTSYTFRS--------- 1721
Query: 336 IVRPDEVLRAIYIPHTAETQYFKAYKQARRRDDDIAIV---NAAFNVTLDIQSDGAVVKD 392
+L A T TQ A+ AAF ++S G + D
Sbjct: 1722 ---EKGLLSA-----TQFTQ--------------PALTLMEKAAFED---LKSKGLIPAD 1756
Query: 393 CEFA 396
FA
Sbjct: 1757 ATFA 1760
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.82
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 5/34 (14%)
Query: 129 EKEELFS-PSEFTPYDKSQEPTFPPELQLNDTYD 161
EK+ L + Y P L + T +
Sbjct: 18 EKQALKKLQASLKLY----ADDSAPALAIKATME 47
Score = 30.3 bits (67), Expect = 1.3
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 21/47 (44%)
Query: 550 KQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEG 596
KQA + K Q L K +A D + ALA++
Sbjct: 19 KQA---------LKKLQASL--------KLYAD----DSAPALAIKA 44
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury
resistance, mercuric resistance, plasmid; 1.78A
{Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A
3f0p_A 3f2f_A
Length = 220
Score = 29.8 bits (66), Expect = 3.4
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 508 LIRDLADALPPSLTRLAPYFQVPSTQAKSDLVGRPIVH 545
L+R+LA P S T LA P+ + + L
Sbjct: 27 LLRELAKGRPVSRTTLAGILDWPAERVAAVLEQATSTE 64
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 28.7 bits (63), Expect = 8.2
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 280 IRNVAAIGGNIMTGSPISDMNPILMAARCRLLLES-KAEGTREVTMDGSFYTSYRKNIVR 338
R A GG M + D C + + +V D S+ + I +
Sbjct: 263 SRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYVMHLKNKIKK 322
Query: 339 PDEVLRAIYI 348
+V+R I I
Sbjct: 323 IGQVIRCICI 332
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for
STRU genomics, JCSG, protein structure initiative,
PSI-2, unknow function; HET: MSE; 1.41A {Bacillus
halodurans}
Length = 148
Score = 27.9 bits (62), Expect = 9.1
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 317 EGTREVTMDGSFYTSYRKNIVRPDEVLRAIYIP 349
EG V M + + V D AI IP
Sbjct: 72 EGRGLVQMGHRQDNLHFQEEVFDDY---AILIP 101
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,407,301
Number of extensions: 845194
Number of successful extensions: 1581
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1489
Number of HSP's successfully gapped: 50
Length of query: 857
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 755
Effective length of database: 3,853,851
Effective search space: 2909657505
Effective search space used: 2909657505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.9 bits)