RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14046
(857 letters)
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 223
Score = 214 bits (547), Expect = 6e-65
Identities = 102/222 (45%), Positives = 148/222 (66%), Gaps = 1/222 (0%)
Query: 132 ELFSPSEFTPYDKSQEPTFPPELQLNDTYDKEYLQIRGPRATWYRPQTLTQLLELKAKFP 191
LF+P EF P D +QEP FPPEL + L+ G R TW + TL +LL+LKA+ P
Sbjct: 3 SLFNPEEFMPLDPTQEPIFPPELLRLKDVPPKQLRFEGERVTWIQASTLKELLDLKAQHP 62
Query: 192 EAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEENGVWIGGATSLNDMRAILS 251
EAKLVVGN+EIG+E+KFK +P++I P+ IPEL G+ G A +L+ + L
Sbjct: 63 EAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGISFGAACALSSVEKTLL 122
Query: 252 EQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMTGSPISDMNPILMAARCRLL 311
E + KLP+ K+ V+ ++E L WFAG Q+++VA++GGNI+T SPISD+NP+ MA+ +L
Sbjct: 123 EAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITASPISDLNPVFMASGTKLT 182
Query: 312 LESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAIYIPHTAE 353
+ S+ R V MD +F+ SYRK ++ P+E+L +I IP++ E
Sbjct: 183 IVSR-GTRRTVPMDHTFFPSYRKTLLGPEEILLSIEIPYSRE 223
>d1v97a4 d.87.2.1 (A:415-528) Xanthine oxidase, domain 4 (?) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 114
Score = 129 bits (325), Expect = 8e-36
Identities = 50/111 (45%), Positives = 69/111 (62%), Gaps = 2/111 (1%)
Query: 355 QYFKAYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQM 414
++F A+KQA RR+DDIA V V VK+ +GGMA T+ A KTT++
Sbjct: 2 EFFSAFKQASRREDDIAKVTCGMRVLFQP--GSMQVKELALCYGGMADRTISALKTTQKQ 59
Query: 415 INKPWNQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYKFYIAVS 465
++K WN+ LL+D L +L L APGGMI++RR+LTLS F+KFY+ V
Sbjct: 60 LSKFWNEKLLQDVCAGLAEELSLSPDAPGGMIEFRRTLTLSFFFKFYLTVL 110
>d1v97a3 d.41.1.1 (A:537-694) Xanthine oxidase, domain 5 (?) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 158
Score = 128 bits (322), Expect = 5e-35
Identities = 71/190 (37%), Positives = 101/190 (53%), Gaps = 33/190 (17%)
Query: 473 ISSRDKSGAQTFHTLPTKSSQYFQVFRVKSGPGGSLIRDLADALPPSLTRLAPYFQVPST 532
+ S F P + Q FQ +VP+
Sbjct: 2 LDPTYTSATLLFQKHPPANIQLFQ-------------------------------EVPNG 30
Query: 533 QAKSDLVGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAAL 592
Q+K D VGRP+ H +A QA+GEA+YCDDIP+Y+ EL+L V S++ HAKI S+D S A
Sbjct: 31 QSKEDTVGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQ 90
Query: 593 AMEGVRGWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAAL 652
+ G ++ D+ + G+ +D+ +FA+D VTCVG IG V+A+ A+RAA +
Sbjct: 91 KVPGFVCFLSADDI--PGSNETGLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHV 148
Query: 653 VKVTYEELPA 662
VKVTYE+LPA
Sbjct: 149 VKVTYEDLPA 158
>d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal domain
{Cow (Bos taurus) [TaxId: 9913]}
Length = 638
Score = 133 bits (334), Expect = 8e-33
Identities = 58/203 (28%), Positives = 99/203 (48%), Gaps = 14/203 (6%)
Query: 663 IFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETNVSVAVP 722
I +I++AI++ SF+ E + +G++ + F + D+++ GE+ +GGQ+HFYLET+ ++A+P
Sbjct: 1 IITIEDAIKNNSFYGSELKI-EKGDLKKGFSEADNVVSGELYIGGQDHFYLETHCTIAIP 59
Query: 723 KLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKEKLQSELYGL-- 780
K E+G ME+FVS+Q+ + Q A LGVP NRI+ + KR+GGGFGGKE + +
Sbjct: 60 KGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVA 119
Query: 781 -----------FTEVREDDWIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEH 829
R +D + H K+ + + ++ +
Sbjct: 120 LAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDL 179
Query: 830 CTLGRCFEQVHESGKYKERRKQC 852
H YK +
Sbjct: 180 SHSIMERALFHMDNCYKIPNIRG 202
>d1jrob2 d.133.1.1 (B:124-777) Xanthine dehydrogenase chain B,
C-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}
Length = 654
Score = 130 bits (327), Expect = 7e-32
Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 2/117 (1%)
Query: 661 PAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETNVSVA 720
PAI ++ +A+ S F P ++ RG+V+ H+ EG +GGQEHFYLE ++A
Sbjct: 1 PAILTLDQALAADSRFEGGPVIWARGDVETALAGAAHLAEGCFEIGGQEHFYLEGQAALA 60
Query: 721 VPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKEKLQSEL 777
+P +G + I SSQHPSEIQ AHALG+ + + + +R+GGGFGGKE + L
Sbjct: 61 LP--AEGGVVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKESQGNHL 115
Score = 32.2 bits (72), Expect = 0.29
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 20/89 (22%)
Query: 789 WIAETMGHHVAQFLKLDYADFARSNL--------------------FVTGNLTHYNQVLE 828
E H+A+ + D A+ N THY Q +
Sbjct: 228 LGMERAIEHLARGMGRDPAELRALNFYDPPERGGLSAPPSPPEPIATKKTQTTHYGQEVA 287
Query: 829 HCTLGRCFEQVHESGKYKERRKQCEEFNR 857
C LG ++ +S + RR + +N
Sbjct: 288 DCVLGELVTRLQKSANFTTRRAEIAAWNS 316
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A,
domain 3 {Rhodobacter capsulatus [TaxId: 1061]}
Length = 167
Score = 118 bits (295), Expect = 3e-31
Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 13/179 (7%)
Query: 174 WYRPQTLTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVEEN 233
+ P+T L + PEA L+ G +++ + V P + S +L Q R +
Sbjct: 2 AFLPETSDALADWYLAHPEATLIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQIRETPD 61
Query: 234 GVWIGGATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIMTG 293
G IG ++ +R + + A+ +L FA Q+R VA IGGNI G
Sbjct: 62 GYGIGAGVTIAALR-----------AFAEGPHPALAGLLRRFASEQVRQVATIGGNIANG 110
Query: 294 SPISDMNPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAIYIPHTA 352
SPI D P L+A L L + R + ++ F+ YRK RP E + ++ +P +A
Sbjct: 111 SPIGDGPPALIAMGASLTLRRG-QERRRMPLED-FFLEYRKQDRRPGEFVESVTLPKSA 167
>d1v97a1 a.56.1.1 (A:93-165) Xanthine oxidase, domain 2 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 73
Score = 105 bits (264), Expect = 4e-28
Identities = 56/74 (75%), Positives = 68/74 (91%), Gaps = 1/74 (1%)
Query: 14 STKTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDMEVALQGNLCRCT 73
STKT+LHPVQER+AK+HGSQCGFCTPGIVMSMY LLR+ P +PT++++E A QGNLCRCT
Sbjct: 1 STKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQP-EPTVEEIEDAFQGNLCRCT 59
Query: 74 GYRPILEGFKTFTE 87
GYRPIL+GF+TF +
Sbjct: 60 GYRPILQGFRTFAK 73
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large
subunit QorL {Pseudomonas putida [TaxId: 303]}
Length = 621
Score = 118 bits (295), Expect = 5e-28
Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 12/143 (8%)
Query: 681 SVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETNVSVAVPKLEDGCMEIFVSSQHPSE 740
+ R + F ++ G+ S G +ET +VA + + ++ ++Q PS
Sbjct: 4 TSRARDELAPIFASSAGVVRGQFSCGRVSACPMETRGAVAQYEWTTQQLILWTATQMPSF 63
Query: 741 IQEMTAHALGVPSNRIVAKTKRLGGGFGGKEKLQSELYGL------------FTEVREDD 788
++ M A +P + I + +GGGFG K L E + + E R+++
Sbjct: 64 VRTMVAMFCAIPEHLIEVRVPDVGGGFGQKAHLHPEELLVCLLSRALGRPVRWIEDRQEN 123
Query: 789 WIAETMGHHVAQFLKLDYADFAR 811
++ T + L + R
Sbjct: 124 FLGATHAKQQRNEMGLAFDGDGR 146
>d1jrob1 d.41.1.1 (B:2-123) Xanthine dehydrogenase chain B,
N-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}
Length = 122
Score = 106 bits (265), Expect = 1e-27
Identities = 40/121 (33%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 539 VGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVR 598
VG+P+ H SA TG+A Y DD+P L+LAF +S++ A I +D GV
Sbjct: 2 VGKPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVI 61
Query: 599 GWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYE 658
D+P N + + A V VGQPI V A A+ AA ++TY
Sbjct: 62 AVFTAADLPHD-NDASPAPSPEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARITYA 120
Query: 659 E 659
Sbjct: 121 P 121
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium
subunit QorM {Pseudomonas putida [TaxId: 303]}
Length = 176
Score = 107 bits (267), Expect = 3e-27
Identities = 30/183 (16%), Positives = 72/183 (39%), Gaps = 11/183 (6%)
Query: 170 PRATWYRPQTLTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPR 229
P ++ P +L +++++ A P+A+++ G + + F+ + L+ + EL +
Sbjct: 4 PAFSYRAPASLQEVIQVLADDPDARIIAGGQSLLPLLAFRLVYPSCLVDLRNVSELFEIS 63
Query: 230 VEENGVWIGGATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGN 289
+ +G + + ++ + ++L A +RN +GG+
Sbjct: 64 QSAGILSVGAMVTHFRNKT---------DPTVAKCVPILPKVLAHVAHQAVRNRGTLGGS 114
Query: 290 IMTGSPISDMNPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAIYIP 349
+ ++M ++ + + S G R V+ F + + EVL + IP
Sbjct: 115 LAHADAGAEMPFLMATLGATMYIASS-AGVRSVSAT-DFMKGHYFTDLEAGEVLVRVEIP 172
Query: 350 HTA 352
A
Sbjct: 173 IPA 175
>d1ffvb2 d.133.1.1 (B:147-803) Carbon monoxide (CO) dehydrogenase
molybdoprotein {Hydrogenophaga pseudoflava [TaxId:
47421]}
Length = 657
Score = 110 bits (275), Expect = 2e-25
Identities = 22/122 (18%), Positives = 41/122 (33%)
Query: 657 YEELPAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETN 716
E+L S + D F + + LET
Sbjct: 12 REDLAGKTSGAHGPREHHNHIFTWGAGDKAATDAVFANAPVTVSQHMYYPRVHPCPLETC 71
Query: 717 VSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKEKLQSE 776
VA G + +++SQ P ++ + + G+P +++ + +GGGFG K +
Sbjct: 72 GCVASFDPIKGDLTTYITSQAPHVVRTVVSMLSGIPESKVRIVSPDIGGGFGNKVGIYPG 131
Query: 777 LY 778
Sbjct: 132 YV 133
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase
flavoprotein, N-terminal domain {Hydrogenophaga
pseudoflava [TaxId: 47421]}
Length = 177
Score = 101 bits (253), Expect = 2e-25
Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 12/185 (6%)
Query: 170 PRATWYRPQTLTQLLELKAKF-PEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQP 228
PR ++ P+++ + + L + +AKL+ G + +K + LI + IPEL
Sbjct: 4 PRFEYHAPKSVGEAVALLGQLGSDAKLLAGGHSLLPMMKLRFAQPEHLIDINRIPELRGI 63
Query: 229 RVEENGVWIGGATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGG 288
R E + V IG T ND+ + + E A Q+RN IGG
Sbjct: 64 REEGSTVVIGAMTVENDLIS---------SPIVQARLPLLAEAAKLIADPQVRNRGTIGG 114
Query: 289 NIMTGSPISDMNPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAIYI 348
+I G P +D + +A +LE G R V DG F+ ++ +EV+ I +
Sbjct: 115 DIAHGDPGNDHPALSIAVEAHFVLEGP-NGRRTVPADG-FFLGTYMTLLEENEVMVEIRV 172
Query: 349 PHTAE 353
P A+
Sbjct: 173 PAFAQ 177
>d1rm6a1 d.41.1.1 (A:9-133) 4-hydroxybenzoyl-CoA reductase alpha
subunit HrcA, N-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 125
Score = 99.9 bits (248), Expect = 2e-25
Identities = 45/124 (36%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 539 VGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVR 598
VG ++ TG+A Y DI L + S HA+IL++D SAA A+EGV
Sbjct: 3 VGVRTPLVDGVEKVTGKAKYTADIA-APDALVGRILRSPHAHARILAIDTSAAEALEGVI 61
Query: 599 GWVDERDVPGQKNYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYE 658
+ P V I ++ ARD V G P+ V A D++ A++A AL+KV YE
Sbjct: 62 AVCTGAETP-VPFGVLPIAENEYPLARDKVRYRGDPVAAVAAIDEVTAEKALALIKVDYE 120
Query: 659 ELPA 662
LPA
Sbjct: 121 VLPA 124
>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase
molybdoprotein {Oligotropha carboxidovorans, formerly
Pseudomonas carboxydovorans [TaxId: 40137]}
Length = 663
Score = 108 bits (270), Expect = 6e-25
Identities = 23/122 (18%), Positives = 43/122 (35%)
Query: 657 YEELPAIFSIQEAIEHKSFFNLEPSVYGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETN 716
E++ + + + D F K + + + + LET
Sbjct: 15 REDIKDKMTGAHGARKHHNHIFRWEIGDKEGTDATFAKAEVVSKDMFTYHRVHPSPLETC 74
Query: 717 VSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNRIVAKTKRLGGGFGGKEKLQSE 776
VA G + ++ + Q P I+ + + G+P ++I +GGGFG K S
Sbjct: 75 QCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFGNKVGAYSG 134
Query: 777 LY 778
Sbjct: 135 YV 136
>d1rm6a2 d.133.1.1 (A:134-769) 4-hydroxybenzoyl-CoA reductase alpha
subunit HrcA, C-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 636
Score = 108 bits (269), Expect = 7e-25
Identities = 23/94 (24%), Positives = 38/94 (40%)
Query: 683 YGRGNVDEEFLKVDHILEGEVSVGGQEHFYLETNVSVAVPKLEDGCMEIFVSSQHPSEIQ 742
G+V F + D I E + H ++E N ++A + + ++Q P +
Sbjct: 28 AEFGDVAAAFAEADLIREKTYTFAEVNHVHMELNATLAEYDPVRDMLTLNTTTQVPYYVH 87
Query: 743 EMTAHALGVPSNRIVAKTKRLGGGFGGKEKLQSE 776
A L + S RI LGGGFG + +
Sbjct: 88 LKVAACLQMDSARIRVIKPFLGGGFGARTEALHF 121
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta
subunit HrcB, N-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 216
Score = 100 bits (251), Expect = 1e-24
Identities = 34/217 (15%), Positives = 62/217 (28%), Gaps = 51/217 (23%)
Query: 173 TWYRPQTLTQLLELKAKFPEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPEL-TQPRVE 231
+RP TL + A + +++ ++ L+ + I L T +
Sbjct: 8 RTHRPATLADAVNALAA-EATLPLGAGTDLLPNLRRGLGHPAALVDLTGIDGLATISTLA 66
Query: 232 ENGVWIGGATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIM 291
+ + IG +L + + A+ + AG R A +GGN+
Sbjct: 67 DGSLRIGAGATLEAIAE---------HDAIRTTWPALAQAAESVAGPTHRAAATLGGNLC 117
Query: 292 TGS--------------------------------------PISDMNPILMAARCRLLLE 313
+ D+ P LM R +
Sbjct: 118 QDTRCTFYNQSEWWRSGNGYCLKYKGDKCHVIVKSDRCYATYHGDVAPALMVLDARAEIV 177
Query: 314 SKAEGTREVTMDGSFY-TSYRKNIVRPDEVLRAIYIP 349
G R V + F + + E+L AI +P
Sbjct: 178 G-PAGKRTVPVAQLFRESGAEHLTLEKGELLAAIEVP 213
>d1n62b1 d.41.1.1 (B:6-146) Carbon monoxide (CO) dehydrogenase
molybdoprotein, N-domain {Oligotropha carboxidovorans,
formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Length = 141
Score = 96.4 bits (239), Expect = 5e-24
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 5/138 (3%)
Query: 530 PSTQAKSDL--VGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVD 587
S + L +G + G+ Y DD+ L+ FV SS HA+I S+D
Sbjct: 5 TSAERAEKLQGMGCKRKRVEDIRFTQGKGNYVDDVK-LPGMLFGDFVRSSHAHARIKSID 63
Query: 588 PSAALAMEGVRGWVDERDVPGQKNYVGGIIHDDV--IFARDVVTCVGQPIGGVIAEDQLI 645
S A A+ GV + D+ + + DV + A + V Q + V+A+D+ +
Sbjct: 64 TSKAKALPGVFAVLTAADLKPLNLHYMPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYV 123
Query: 646 AQRAAALVKVTYEELPAI 663
A A LV+V YE LP +
Sbjct: 124 AADAIELVEVDYEPLPVL 141
>d1vlba4 d.133.1.1 (A:311-907) Aldehyde oxidoreductase
{Desulfovibrio gigas [TaxId: 879]}
Length = 597
Score = 103 bits (256), Expect = 2e-23
Identities = 27/137 (19%), Positives = 42/137 (30%), Gaps = 12/137 (8%)
Query: 686 GNVDEEFLKVDHILEGEVSVGGQEHFYLETNVSVAVPKLEDGCMEIFVSSQHPSEIQEMT 745
+ F D +EG+ VG Q H +E +V+ A +DG I S M
Sbjct: 31 EDTGPIFASADVTVEGDFYVGRQPHMPIEPDVAFAYMG-DDGKCYIHSKSIGVHLHLYMI 89
Query: 746 AHALGVPSNRIVAKTKRLGGGFGGKEKLQSEL-----------YGLFTEVREDDWIAETM 794
A +G+ +++V +GG FG K SE +
Sbjct: 90 APGVGLEPDQLVLVANPMGGTFGYKFSPTSEALVAVAAMATGRPVHLRYNYQQQQQYTGK 149
Query: 795 GHHVAQFLKLDYADFAR 811
+K
Sbjct: 150 RSPWEMNVKFAAKKDGT 166
>d1ffvb1 d.41.1.1 (B:7-146) Carbon monoxide (CO) dehydrogenase
molybdoprotein, N-domain {Hydrogenophaga pseudoflava
[TaxId: 47421]}
Length = 140
Score = 93.7 bits (232), Expect = 4e-23
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 539 VGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAMEGVR 598
+G + + G+ Y DDI L++ V + H +I + AALAM GV
Sbjct: 12 MGASRLRKEDARFIQGKGNYVDDIK-MPGMLHMDIVRAPIAHGRIKKIHKDAALAMPGVH 70
Query: 599 GWVDERDVPGQKNYVGGIIHDDV--IFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVT 656
+ D+ K + + DV + A + V Q + VIA+D+ IA A VKV
Sbjct: 71 AVLTAEDLKPLKLHWMPTLAGDVAAVLADEKVHFQMQEVAIVIADDRYIAADAVEAVKVE 130
Query: 657 YEELPAIF 664
Y+ELP +
Sbjct: 131 YDELPVVI 138
>d1jroa3 d.87.2.1 (A:346-462) Xanthine dehydrogenase chain A, domain
4 {Rhodobacter capsulatus [TaxId: 1061]}
Length = 117
Score = 92.0 bits (228), Expect = 8e-23
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 11/121 (9%)
Query: 357 FKAYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQMIN 416
+ YK ++R D DI+ V N+TL G+ ++ AFGGMA A +I
Sbjct: 3 LRCYKLSKRFDQDISAVCGCLNLTL----KGSKIETARIAFGGMAGVPKRAAAFEAALIG 58
Query: 417 KPWNQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYKFYI-----AVSVDTQVT 471
+ + + + L D S YR + ++ ++ AV+V +V
Sbjct: 59 QDFREDTIAAALPLLAQDFTPL-SDMRASAAYRMNAAQAMALRYVRELSGEAVAV-LEVM 116
Query: 472 P 472
P
Sbjct: 117 P 117
>d1t3qb1 d.41.1.1 (B:1-165) Quinoline 2-oxidoreductase large subunit
QorL, N-domain {Pseudomonas putida [TaxId: 303]}
Length = 165
Score = 91.0 bits (225), Expect = 8e-22
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 8/149 (5%)
Query: 535 KSDLVGRPIVHASAFKQATGEAIYCDDIPKYQTELYLAFVVSSKPHAKILSVDPSAALAM 594
K +G ++ + TG Y D+ L++A + S HA+I+S+D + A A+
Sbjct: 10 KKKSIGTSVLRREDTRLLTGRGRYIADLV-LSGMLHVASLRSPFAHARIVSIDVADAQAL 68
Query: 595 EGVRGWVDERDVPGQK-------NYVGGIIHDDVIFARDVVTCVGQPIGGVIAEDQLIAQ 647
GV DV G + A V VG+ + V+A + IA+
Sbjct: 69 PGVELVWCGADVAELSQGIVATMQVEGFQTTIQPLLANGVTRFVGEIVAVVVASSRAIAE 128
Query: 648 RAAALVKVTYEELPAIFSIQEAIEHKSFF 676
AA L++V YEELPA+ I+ A+E ++
Sbjct: 129 DAAQLIQVEYEELPAVTGIEAALEGEARA 157
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase
flavoprotein, N-terminal domain {Oligotropha
carboxidovorans, formerly Pseudomonas carboxydovorans
[TaxId: 40137]}
Length = 177
Score = 90.7 bits (224), Expect = 1e-21
Identities = 43/178 (24%), Positives = 68/178 (38%), Gaps = 12/178 (6%)
Query: 173 TWYRPQTLTQLLELKAKF-PEAKLVVGNSEIGVEVKFKKFFYPVLIQPSLIPELTQPRVE 231
++RP+++ + L K +A+ + G + +K + L+ I +L R E
Sbjct: 7 DYHRPKSIADAVALLTKLGEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGIREE 66
Query: 232 ENGVWIGGATSLNDMRAILSEQIEKLPSHKSRVYVAIVEMLHWFAGNQIRNVAAIGGNIM 291
V IG T+ + + + I E A QIR + IGGN
Sbjct: 67 GTDVVIGAMTTQHALIG---------SDFLAAKLPIIRETSLLIADPQIRYMGTIGGNAA 117
Query: 292 TGSPISDMNPILMAARCRLLLESKAEGTREVTMDGSFYTSYRKNIVRPDEVLRAIYIP 349
G P +DM ++ L EG R V +Y + P E+L AI IP
Sbjct: 118 NGDPGNDMPALMQCLGAAYELTG-PEGARIVAARD-YYQGAYFTAIEPGELLTAIRIP 173
>d1t3qa1 a.56.1.1 (A:88-168) Quinoline 2-oxidoreductase small
subunit QorS, C-domain {Pseudomonas putida [TaxId:
303]}
Length = 81
Score = 87.3 bits (216), Expect = 1e-21
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 18 KLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDMEVALQGNLCRCTGYRP 77
KL+ +Q+ + H QCGFCT G++ + ++L P P+ ++ + GNLCRCTGY
Sbjct: 4 KLNALQDSFRRHHALQCGFCTAGMLATARSILAENP-APSRDEVREVMSGNLCRCTGYET 62
Query: 78 ILEGFKTF 85
I++
Sbjct: 63 IIDAITDP 70
>d1ffva1 a.56.1.1 (A:82-157) Carbon monoxide (CO) dehydrogenase
iron-sulfur protein, C-domain {Hydrogenophaga
pseudoflava [TaxId: 47421]}
Length = 76
Score = 85.4 bits (211), Expect = 6e-21
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 16 KTKLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDMEVALQGNLCRCTGY 75
K LH VQE K HG QCGFCTPG++M Y L+ P + + GNLCRCTGY
Sbjct: 2 KGVLHAVQEGFYKEHGLQCGFCTPGMLMRAYRFLQENPNPTEAEIRM-GMTGNLCRCTGY 60
Query: 76 RPILEGFKTFTEE 88
+ I++ + +
Sbjct: 61 QNIVKAVQYAARK 73
>d1dgja4 d.133.1.1 (A:311-906) Aldehyde oxidoreductase
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 596
Score = 93.6 bits (231), Expect = 2e-20
Identities = 27/117 (23%), Positives = 39/117 (33%), Gaps = 11/117 (9%)
Query: 665 SIQEAIE------HKSFFNLEPS-VYGRGNVDEEFL--KVDHILEGEVSVGGQEHFYLET 715
S EA+ H N+ + +G F + + EG Q H +E
Sbjct: 2 SAPEAMAPDAIEIHPGTPNVYYDQLEEKGEDTVPFFNDPANVVAEGSYYTQRQPHLPIEP 61
Query: 716 NVSVAVPKLEDGCMEIFVSSQHPSEIQEMTAHALGVPSNR-IVAKTKRLGGGFGGKE 771
+V E G + I S M A LG+ + +V GG FG K
Sbjct: 62 DVGYGYIN-EQGQVVIHSKSVAIHLHALMIAPGLGLEFPKDLVLVQNTTGGTFGYKF 117
>d1n62a1 a.56.1.1 (A:82-163) Carbon monoxide (CO) dehydrogenase
iron-sulfur protein, C-domain {Oligotropha
carboxidovorans, formerly Pseudomonas carboxydovorans
[TaxId: 40137]}
Length = 82
Score = 83.5 bits (206), Expect = 3e-20
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 18 KLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDMEVALQGNLCRCTGYRP 77
L +QE HG QCG+CTPG++M + LL+ P + + GNLCRCTGY+
Sbjct: 5 TLSALQEGFRMMHGLQCGYCTPGMIMRSHRLLQENPSPTEAEIRF-GIGGNLCRCTGYQN 63
Query: 78 ILEGFKTFTEE 88
I++ + +
Sbjct: 64 IVKAIQYAAAK 74
>d1rm6c1 a.56.1.1 (C:82-157) 4-hydroxybenzoyl-CoA reductase gamma
subunit HrcC, C-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 76
Score = 82.8 bits (204), Expect = 5e-20
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 18 KLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDMEVALQGNLCRCTGYRP 77
L +Q + G+QCGFCTPG++M+ ALLR P P+ +++ AL GNLCRCTGY
Sbjct: 3 TLSKLQAAFHEKLGTQCGFCTPGMIMASEALLRKNP-SPSRDEIKAALAGNLCRCTGYVK 61
Query: 78 ILEGFKTFTEE 88
I++ +T
Sbjct: 62 IIKSVETAAAA 72
>d1jroa1 a.56.1.1 (A:85-166) Xanthine dehydrogenase chain A,
domain 2 {Rhodobacter capsulatus [TaxId: 1061]}
Length = 82
Score = 82.0 bits (202), Expect = 1e-19
Identities = 37/77 (48%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 18 KLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDMEVALQGNLCRCTGYRP 77
+LHPVQ+ + HGSQCGFCTPG ++SM A KD + L GNLCRCTGY P
Sbjct: 3 RLHPVQQAMIDHHGSQCGFCTPGFIVSMAAA-----HDRDRKDYDDLLAGNLCRCTGYAP 57
Query: 78 ILEGFKTFTEEWERDRL 94
IL + E D L
Sbjct: 58 ILRAAEAAAGEPPADWL 74
>d1vlba3 d.41.1.1 (A:194-310) Aldehyde oxidoreductase, domain 3
{Desulfovibrio gigas [TaxId: 879]}
Length = 117
Score = 79.9 bits (196), Expect = 2e-18
Identities = 39/115 (33%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
Query: 558 YCDDIPKYQTE--LYLAFVVSSKPHAKILSVDPSAALAMEGVRGWVDERDVPGQKNYVGG 615
Y D+ L+LA V + HA I +D S AL M GV + +DV G+ G
Sbjct: 2 YGADLGLKMPAGTLHLAMVQAKVSHANIKGIDTSEALTMPGVHSVITHKDVKGKNRITGL 61
Query: 616 IIH--------DDVIFARDVVTCVGQPIGGVIAEDQLIAQRAAALVKVTYEELPA 662
I D I + V G I V A+ + A+ AA VKV EELPA
Sbjct: 62 ITFPTNKGDGWDRPILCDEKVFQYGDCIALVCADSEANARAAAEKVKVDLEELPA 116
>d1t3qc1 d.87.2.1 (C:177-285) Quinoline 2-oxidoreductase medium
subunit QorM {Pseudomonas putida [TaxId: 303]}
Length = 109
Score = 77.7 bits (191), Expect = 7e-18
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 5/102 (4%)
Query: 359 AYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQMINKP 418
+ + RR D A+V AA +++ G A G + A + + ++ K
Sbjct: 3 EFDEYARRKGDYALVMAAAGLSM----QGGRCVAARIALGAVEERAHQAIRANDFLVGKV 58
Query: 419 WNQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYKF 460
++S L S G R SL ++ +
Sbjct: 59 IDESTAATAAELATEGLE-PRSDIHGSRDLRLSLAKAITQRV 99
>d1n62c1 d.87.2.1 (C:178-286) Carbon monoxide (CO) dehydrogenase
flavoprotein, C-terminal domain {Oligotropha
carboxidovorans, formerly Pseudomonas carboxydovorans
[TaxId: 40137]}
Length = 109
Score = 76.7 bits (188), Expect = 2e-17
Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 5/101 (4%)
Query: 359 AYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQMINKP 418
AY++ +R+ D A AA +T+ G +A T + A++ + ++
Sbjct: 5 AYEKLKRKIGDYATAAAAVVLTM----SGGKCVTASIGLTNVANTPLWAEEAGKVLVGTA 60
Query: 419 WNQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYK 459
++ L+ A G +YR + + +
Sbjct: 61 LDKPALDKAVALAEAITAPAS-DGRGPAEYRTKMAGVMLRR 100
>d1ffvc1 d.87.2.1 (C:178-287) Carbon monoxide (CO) dehydrogenase
flavoprotein, C-terminal domain {Hydrogenophaga
pseudoflava [TaxId: 47421]}
Length = 110
Score = 71.6 bits (175), Expect = 9e-16
Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 7/102 (6%)
Query: 359 AYKQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQMINKP 418
AY++ +R+ D A A + G V A +APT + A+ ++ K
Sbjct: 5 AYEKLKRKTGDWATAGCAVVMRK----SGNTVSHIRIALTNVAPTALRAEAAEAALLGKA 60
Query: 419 WNQSLLEDTWRNLMADL-PLDHSAPGGMIQYRRSLTLSLFYK 459
+ + ++ +A P + G Y+ ++ + +
Sbjct: 61 FTKEAVQAAADAAIAICEPAED--LRGDADYKTAMAGQMVKR 100
>d1vlba1 a.56.1.1 (A:81-193) Aldehyde oxidoreductase, domain 2
{Desulfovibrio gigas [TaxId: 879]}
Length = 113
Score = 71.3 bits (174), Expect = 1e-15
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 18 KLHPVQERLAKAHGSQCGFCTPGIVMSMYALLRSLPGKPTMKDME-VALQGNLCRCTGYR 76
LHP+Q+ G+QCGFC+PG ++S LL + + N CRCTGY+
Sbjct: 4 NLHPLQKAWVLHGGAQCGFCSPGFIVSAKGLLDTNADPSREDVRDWFQKHRNACRCTGYK 63
Query: 77 PILEGFK 83
P+++
Sbjct: 64 PLVDAVM 70
>d1rm6b1 d.87.2.1 (B:217-323) 4-hydroxybenzoyl-CoA reductase beta
subunit HrcB, C-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 107
Score = 48.1 bits (114), Expect = 2e-07
Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 8/102 (7%)
Query: 359 AY-KQARRRDDDIAIVNAAFNVTLDIQSDGAVVKDCEFAFGGMAPTTVLAKKTTEQMINK 417
AY K R D + A + DG + A G ++ + ++
Sbjct: 5 AYSKVRIRDAVDFPLAGVAAALQR----DGDRIAGLRVAITGSNSAPLM--VPVDALLGG 58
Query: 418 PWNQSLLEDTWRNLMADLPLDHSAPGGMIQYRRSLTLSLFYK 459
W+ + E + + + + ++YRR + L++ K
Sbjct: 59 NWDDAAAETLAQLVRKTSNVLRTT-ITGVKYRRRVLLAISRK 99
>d2fug11 a.29.12.1 (1:334-438) NADH-quinone oxidoreductase chain
1, Nqo1 {Thermus thermophilus [TaxId: 274]}
Length = 105
Score = 29.4 bits (66), Expect = 0.56
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 13/71 (18%)
Query: 34 CGFCTP---GIVMSMYALLRSL-PGKPTMKDMEVALQ-------GNLCR--CTGYRPILE 80
CG CTP G+ M L + G+ KD+E + C P+
Sbjct: 20 CGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKG 79
Query: 81 GFKTFTEEWER 91
+ F +++
Sbjct: 80 SLRHFKDQYLA 90
>d1v97a2 d.15.4.2 (A:3-92) Xanthine oxidase, N-terminal domain
{Cow (Bos taurus) [TaxId: 9913]}
Length = 90
Score = 27.6 bits (61), Expect = 2.2
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 1 MHGLAVTTVEGIG 13
+H +AVTTVEGIG
Sbjct: 78 LHHVAVTTVEGIG 90
>d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma
subunit HrcC, N-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 81
Score = 26.7 bits (59), Expect = 3.4
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 1 MHGLAVTTVEGIGS 14
+ G V TVE + +
Sbjct: 68 VAGKKVETVESLAT 81
>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli
[TaxId: 562]}
Length = 84
Score = 26.5 bits (58), Expect = 3.8
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 744 MTAHALGVPSNRIVAKTKRLGGGFGG---KEKL 773
A+ +P +R+V L G G K +L
Sbjct: 45 ANKLAIVIPCHRVVRGDGSLSGYRWGVSRKAQL 77
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 28.1 bits (61), Expect = 5.1
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 79 LEGFKTFTEEWERDRLTNGTNGINGSVQNGNG 110
L FK++ + + I G NG+G
Sbjct: 8 LSNFKSYRGVTKVGFGESNFTSIIG--PNGSG 37
>d1hh2p2 d.52.3.1 (P:199-276) Transcription factor NusA, C-terminal
domains {Thermotoga maritima [TaxId: 2336]}
Length = 78
Score = 25.8 bits (57), Expect = 5.7
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 11/56 (19%)
Query: 721 VPKLEDGCMEIFVSSQHPSEIQEMTAHA-----------LGVPSNRIVAKTKRLGG 765
+P++E+G +EI ++ P ++ + +G +RI A K L G
Sbjct: 14 IPEVENGIVEIKAIAREPGVRTKVAVASNDPNVDPIGACIGEGGSRIAAILKELKG 69
>d1jida_ d.201.1.1 (A:) SRP19 {Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 26.3 bits (58), Expect = 6.7
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 55 KPTMKDMEVALQGNLCRCTGYRPILEGFKTFTEEWERDRLTNG 97
PT +++ C G LE K ++ EW RD G
Sbjct: 39 NPTATEIQDV-----CSAVGLNVFLEKNKMYSREWNRDVQYRG 76
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus
sphaericus [TaxId: 1421]}
Length = 230
Score = 27.3 bits (60), Expect = 7.2
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 40 GIVMSMYALLRSLPGKPTMKDMEVALQG 67
G+ M A + G +++ + V++QG
Sbjct: 19 GVYRGMKAAAKEAFGSDSLEGLAVSVQG 46
>d2glza1 d.81.3.1 (A:3-151) FwdE-like protein DSY1837 (Dhaf_2201)
{Desulfitobacterium hafniense [TaxId: 49338]}
Length = 149
Score = 26.7 bits (59), Expect = 7.3
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 24 ERLAKAHGSQCGFCTPGIVMSMYAL 48
E + HG C G ++ A
Sbjct: 7 ELVIDFHGHTCPDIALGYRIAQLAQ 31
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,235,019
Number of extensions: 154073
Number of successful extensions: 449
Number of sequences better than 10.0: 1
Number of HSP's gapped: 414
Number of HSP's successfully gapped: 46
Length of query: 857
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 764
Effective length of database: 1,130,706
Effective search space: 863859384
Effective search space used: 863859384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.0 bits)