BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14047
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L9X|A Chain A, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|B Chain B, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|C Chain C, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|D Chain D, Structure Of Gamma-Glutamyl Hydrolase
Length = 315
Score = 150 bits (379), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 105/349 (30%), Positives = 167/349 (47%), Gaps = 61/349 (17%)
Query: 2 EATERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKI 61
+ ++PIIGIL Q+ V K++ + YI ASYVK +E+
Sbjct: 26 DTAKKPIIGILMQKCRNKVMKNYGRY--YIAASYVKYLES-------------------- 63
Query: 62 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGV 121
AGA + + +++ ++ +I + +NG+
Sbjct: 64 ------------------------AGARVVPVRLDLTEKDYEI---------LFKSINGI 90
Query: 122 LIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRT 181
L PGG D YAK + Y ++ + ++ DYFP+ G CLGF+ L + E L T
Sbjct: 91 LFPGGSVDLRRSD-YAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGEC-LLT 148
Query: 182 RCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDN-GLA 240
D + L F S ++ P +L LA +T N+H W ++ NFT N L
Sbjct: 149 ATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLK 208
Query: 241 KEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARY 300
K + VL+TN++ + ++FIS++E YP G+Q+HPEK YEWK H A++ A Y
Sbjct: 209 KFFNVLTTNTDGK-IEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFY 267
Query: 301 FFDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
++ V++A ++H F++E EE+ ALIY + P YT I + Q Y+F
Sbjct: 268 LAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYTGNIS--SFQQCYIF 314
>pdb|3NVA|A Chain A, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
pdb|3NVA|B Chain B, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
Length = 535
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 19/96 (19%)
Query: 81 DGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE-------KILGQVNGVLI-PGGGASFYA 132
D Y IY + + R IW +E +ILG VNG+++ PG G+
Sbjct: 307 DSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFGSR--G 364
Query: 133 DDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQL 168
+G KA K A+E N P +GIC GFQL
Sbjct: 365 AEGKIKA----IKYAREHN-----IPFLGICFGFQL 391
>pdb|1S1M|A Chain A, Crystal Structure Of E. Coli Ctp Synthetase
pdb|1S1M|B Chain B, Crystal Structure Of E. Coli Ctp Synthetase
pdb|2AD5|A Chain A, Mechanisms Of Feedback Regulation And Drug Resistance Of
Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
Complex At 2.8- Angstrom Resolution.
pdb|2AD5|B Chain B, Mechanisms Of Feedback Regulation And Drug Resistance Of
Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
Complex At 2.8- Angstrom Resolution
Length = 545
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 21/89 (23%)
Query: 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIY--KIAKEFNENRDYFPIMGICLGFQLLL 170
+IL ++ +L+PGG GY MI + A+E N P +GICLG Q+ L
Sbjct: 339 EILKGLDAILVPGGF-------GYRGVEGMITTARFARENN-----IPYLGICLGMQVAL 386
Query: 171 -----YTSNNENELRTR--CDCFYENLAL 192
+ +N EN T DC Y +AL
Sbjct: 387 IDYARHVANMENANSTEFVPDCKYPVVAL 415
>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 195
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
Query: 158 PIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELAT 217
PI+G+CLG Q + Y + +R F+ ++ +L + +P+ + +A
Sbjct: 79 PILGVCLGHQAIGYAFGAK--IRRARKVFHGKIS--------NIILVNNSPLSLYYGIAK 128
Query: 218 SHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPE 276
+H + + + L ++ + I ++ H+ YP G+QFHPE
Sbjct: 129 EFKATRYHSLVVD----------EVHRPLIVDAISAEDNEIMAIHHEEYPIYGVQFHPE 177
>pdb|3FIJ|A Chain A, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|B Chain B, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|C Chain C, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|D Chain D, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|E Chain E, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|F Chain F, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|G Chain G, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|H Chain H, Crystal Structure Of A Uncharacterized Protein Lin1909
Length = 254
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQV 65
+P+IGI GVD + +Y YV A++ G + I +P + I V
Sbjct: 4 KPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPSTAVQAI-SLV 62
Query: 66 NGVLIPGG 73
+G+L+ GG
Sbjct: 63 DGLLLTGG 70
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 95 KEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNEN 153
KEV ++L I + L K E IL ++GVL+ G + D+ +++ A++ K+ N+N
Sbjct: 169 KEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDES-SRSHAILNIDLKDINKN 226
>pdb|2QUP|A Chain A, Crystal Structure Of Uncharacterized Protein Bh1478 From
Bacillus Halodurans
Length = 145
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Query: 82 GYAKAG-AMIYKIAKEVSYRELDIWQSLLKIEK-------ILGQVNGVLI 123
G+ + G IYKI KEV + LD+ ++L EK ++G++ G+LI
Sbjct: 92 GFNRRGRTKIYKIVKEVDRKLLDLTDAVLAKEKKGLDILNMVGEIKGLLI 141
>pdb|2VKT|A Chain A, Human Ctp Synthetase 2 - Glutaminase Domain
Length = 289
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 17/64 (26%)
Query: 105 WQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICL 164
WQ L K +G+L+PGG F K A+ + K+ P +G+CL
Sbjct: 85 WQKLCK-------ADGILVPGG---FGIRGTLGKLQAISWARTKKI-------PFLGVCL 127
Query: 165 GFQL 168
G QL
Sbjct: 128 GMQL 131
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 139 AGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENEL 179
AG + ++AK+ EN ++ +C +L+ NEN L
Sbjct: 171 AGGTVLRLAKDLAENNKGSRVLIVCSEITAILFHGPNENHL 211
>pdb|2W22|A Chain A, Activation Mechanism Of Bacterial Thermoalkalophilic
Lipases
Length = 389
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 273 FHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFETEEEEKAALIYNYCP 332
F K + W T D ++I A W+ + + + SF TE + AL NY P
Sbjct: 226 FERLKRSPVWTST-DTARYDLSIPGAEKLNQWVQASPNTYYLSFSTERTHRGALTGNYYP 284
Query: 333 E 333
E
Sbjct: 285 E 285
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,513,035
Number of Sequences: 62578
Number of extensions: 503209
Number of successful extensions: 1306
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1292
Number of HSP's gapped (non-prelim): 23
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)