Query psy14047
Match_columns 350
No_of_seqs 204 out of 1925
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 18:14:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01747 GATase1_Glutamyl_Hydro 100.0 3.6E-53 7.8E-58 391.7 24.4 271 9-336 1-273 (273)
2 KOG1559|consensus 100.0 2.6E-53 5.7E-58 368.9 20.4 287 4-350 50-340 (340)
3 COG2071 Predicted glutamine am 100.0 7.3E-39 1.6E-43 282.1 15.8 229 4-312 1-241 (243)
4 PF07722 Peptidase_C26: Peptid 100.0 2.3E-37 5E-42 277.9 16.2 205 7-276 1-217 (217)
5 PRK11366 puuD gamma-glutamyl-g 100.0 1.2E-35 2.6E-40 272.6 19.6 227 4-312 5-247 (254)
6 cd01745 GATase1_2 Subgroup of 100.0 1.6E-28 3.4E-33 216.3 15.3 188 9-306 1-189 (189)
7 TIGR00888 guaA_Nterm GMP synth 100.0 3.8E-27 8.2E-32 207.5 18.7 174 33-310 12-186 (188)
8 cd01743 GATase1_Anthranilate_S 100.0 4.3E-27 9.2E-32 206.4 17.9 171 33-306 12-184 (184)
9 PRK05670 anthranilate synthase 100.0 4E-27 8.7E-32 207.5 17.6 177 32-310 12-189 (189)
10 PRK07765 para-aminobenzoate sy 100.0 7E-27 1.5E-31 209.4 18.8 182 32-312 13-195 (214)
11 COG0512 PabA Anthranilate/para 99.9 1.2E-26 2.5E-31 198.9 17.4 144 118-308 46-190 (191)
12 PRK08007 para-aminobenzoate sy 99.9 1.2E-26 2.7E-31 203.8 17.8 173 33-307 13-186 (187)
13 TIGR00566 trpG_papA glutamine 99.9 2.6E-26 5.6E-31 202.0 19.1 175 32-307 12-187 (188)
14 PRK08857 para-aminobenzoate sy 99.9 3.2E-26 6.9E-31 202.3 18.8 178 33-308 13-192 (193)
15 cd01744 GATase1_CPSase Small c 99.9 3.6E-26 7.8E-31 199.5 18.0 168 34-306 11-178 (178)
16 cd01742 GATase1_GMP_Synthase T 99.9 1.2E-26 2.6E-31 203.0 15.0 170 33-306 12-181 (181)
17 PRK05637 anthranilate synthase 99.9 7.9E-26 1.7E-30 201.4 20.3 189 33-311 15-207 (208)
18 PLN02335 anthranilate synthase 99.9 5.9E-26 1.3E-30 204.5 19.0 182 32-312 31-216 (222)
19 PRK06895 putative anthranilate 99.9 5.1E-26 1.1E-30 200.6 18.1 177 28-307 11-187 (190)
20 PRK07649 para-aminobenzoate/an 99.9 7.3E-26 1.6E-30 200.0 18.4 178 33-312 13-191 (195)
21 PRK00758 GMP synthase subunit 99.9 4.2E-26 9.2E-31 200.1 16.5 170 33-311 13-183 (184)
22 TIGR01368 CPSaseIIsmall carbam 99.9 1E-25 2.3E-30 214.7 19.7 174 32-311 184-358 (358)
23 PRK12564 carbamoyl phosphate s 99.9 9.5E-26 2.1E-30 215.4 19.0 174 30-308 186-359 (360)
24 CHL00101 trpG anthranilate syn 99.9 8.4E-26 1.8E-30 199.1 17.1 174 33-308 13-188 (190)
25 PRK06774 para-aminobenzoate sy 99.9 1.1E-25 2.4E-30 198.6 17.7 177 33-307 13-190 (191)
26 PF00117 GATase: Glutamine ami 99.9 4.2E-25 9.1E-30 194.9 18.2 167 31-281 9-179 (192)
27 COG0518 GuaA GMP synthase - Gl 99.9 8.4E-26 1.8E-30 199.0 12.8 176 33-307 15-191 (198)
28 COG0118 HisH Glutamine amidotr 99.9 3E-25 6.6E-30 191.1 15.2 158 112-309 34-203 (204)
29 PLN02347 GMP synthetase 99.9 1.1E-24 2.4E-29 218.0 20.2 189 33-319 24-214 (536)
30 PRK12838 carbamoyl phosphate s 99.9 2.3E-24 5E-29 205.2 19.0 175 31-311 177-352 (354)
31 CHL00197 carA carbamoyl-phosph 99.9 3E-24 6.5E-29 205.7 18.7 175 32-313 203-378 (382)
32 PRK00074 guaA GMP synthase; Re 99.9 5.7E-24 1.2E-28 213.1 21.1 175 33-311 17-192 (511)
33 PRK09065 glutamine amidotransf 99.9 1.8E-24 3.9E-29 196.8 15.7 139 115-279 52-190 (237)
34 PRK07567 glutamine amidotransf 99.9 3.6E-24 7.8E-29 195.3 16.0 114 143-280 82-195 (242)
35 COG0505 CarA Carbamoylphosphat 99.9 7.3E-24 1.6E-28 196.1 16.8 179 30-313 188-366 (368)
36 PRK13525 glutamine amidotransf 99.9 1.4E-23 3.1E-28 184.6 17.3 185 7-310 2-188 (189)
37 PRK13566 anthranilate synthase 99.9 1.8E-23 3.8E-28 215.5 18.7 181 32-310 539-719 (720)
38 PRK05665 amidotransferase; Pro 99.9 7.7E-24 1.7E-28 192.6 13.8 137 114-279 54-190 (240)
39 cd01741 GATase1_1 Subgroup of 99.9 1.3E-23 2.8E-28 184.9 14.3 165 32-276 13-180 (188)
40 TIGR01815 TrpE-clade3 anthrani 99.9 4.9E-23 1.1E-27 211.9 19.1 183 32-312 529-711 (717)
41 PLN02771 carbamoyl-phosphate s 99.9 4.2E-23 9.2E-28 198.3 15.8 159 31-281 250-408 (415)
42 PRK06490 glutamine amidotransf 99.9 4.4E-23 9.6E-28 187.7 15.0 161 33-279 22-183 (239)
43 PRK09522 bifunctional glutamin 99.9 1.3E-22 2.8E-27 203.3 18.5 131 157-327 78-208 (531)
44 PRK07053 glutamine amidotransf 99.9 8.4E-23 1.8E-27 185.3 14.1 167 33-280 17-183 (234)
45 CHL00188 hisH imidazole glycer 99.9 1.5E-22 3.3E-27 180.5 14.1 155 115-309 37-210 (210)
46 PRK08250 glutamine amidotransf 99.9 1.7E-22 3.6E-27 183.7 14.6 112 143-279 73-184 (235)
47 PRK14607 bifunctional glutamin 99.9 3.2E-22 6.9E-27 201.7 17.6 118 157-311 74-191 (534)
48 cd01746 GATase1_CTP_Synthase T 99.9 2.4E-22 5.1E-27 182.2 14.1 139 146-306 76-235 (235)
49 PLN02889 oxo-acid-lyase/anthra 99.9 8.4E-22 1.8E-26 205.1 19.7 127 157-313 163-339 (918)
50 PRK13170 hisH imidazole glycer 99.9 5E-22 1.1E-26 175.8 14.2 149 114-307 35-195 (196)
51 KOG3179|consensus 99.9 2E-22 4.4E-27 171.8 10.4 189 112-332 54-243 (245)
52 PRK13141 hisH imidazole glycer 99.9 1E-21 2.2E-26 175.3 14.5 153 114-310 34-203 (205)
53 PRK13527 glutamine amidotransf 99.9 4.5E-21 9.7E-26 170.4 17.4 188 8-310 2-198 (200)
54 PRK13152 hisH imidazole glycer 99.9 2.7E-21 5.9E-26 171.9 15.3 153 114-307 34-200 (201)
55 PRK13181 hisH imidazole glycer 99.9 1.6E-21 3.5E-26 173.1 13.7 150 114-307 34-198 (199)
56 PRK13146 hisH imidazole glycer 99.9 1.4E-21 2.9E-26 174.7 12.8 154 113-309 37-208 (209)
57 PRK14004 hisH imidazole glycer 99.9 4.3E-21 9.2E-26 171.2 15.3 157 112-308 32-209 (210)
58 cd01748 GATase1_IGP_Synthase T 99.9 2.9E-21 6.2E-26 171.4 13.2 137 114-278 33-186 (198)
59 PRK13143 hisH imidazole glycer 99.9 7.2E-21 1.6E-25 169.0 15.2 151 115-311 36-200 (200)
60 cd01749 GATase1_PB Glutamine A 99.9 6.9E-21 1.5E-25 166.9 14.1 171 9-279 1-174 (183)
61 TIGR01823 PabB-fungal aminodeo 99.8 4.2E-20 9.1E-25 191.8 20.3 122 156-314 86-209 (742)
62 PRK13142 hisH imidazole glycer 99.8 2.5E-20 5.4E-25 163.1 14.5 153 113-308 33-187 (192)
63 TIGR03800 PLP_synth_Pdx2 pyrid 99.8 4.7E-20 1E-24 161.4 15.3 170 9-278 2-173 (184)
64 PRK06186 hypothetical protein; 99.8 6.6E-20 1.4E-24 163.7 15.5 143 143-311 74-228 (229)
65 TIGR01855 IMP_synth_hisH imida 99.8 9.7E-20 2.1E-24 161.3 14.9 153 114-307 33-195 (196)
66 TIGR00337 PyrG CTP synthase. C 99.8 1.9E-19 4.1E-24 177.3 18.2 212 5-308 288-525 (525)
67 PRK05380 pyrG CTP synthetase; 99.8 1.7E-19 3.7E-24 177.6 17.9 148 146-312 364-529 (533)
68 PLN02617 imidazole glycerol ph 99.8 8.2E-19 1.8E-23 175.5 16.0 158 114-314 41-215 (538)
69 KOG0026|consensus 99.8 3.4E-19 7.4E-24 147.4 10.9 149 117-310 63-215 (223)
70 PLN02327 CTP synthase 99.8 6.6E-19 1.4E-23 173.8 13.7 174 111-313 356-550 (557)
71 PLN02832 glutamine amidotransf 99.8 5.2E-18 1.1E-22 153.6 16.5 195 8-311 3-216 (248)
72 TIGR01737 FGAM_synth_I phospho 99.8 1.7E-17 3.6E-22 150.2 16.5 209 8-308 2-226 (227)
73 KOG1224|consensus 99.7 3.4E-17 7.5E-22 157.2 12.0 164 116-320 63-228 (767)
74 COG0504 PyrG CTP synthase (UTP 99.7 9E-17 1.9E-21 154.2 12.5 169 118-314 344-531 (533)
75 KOG1622|consensus 99.7 2.4E-17 5.3E-22 155.7 7.4 186 36-323 33-220 (552)
76 KOG0370|consensus 99.7 3.8E-16 8.1E-21 158.0 13.7 179 31-317 182-360 (1435)
77 COG0311 PDX2 Predicted glutami 99.7 1.1E-15 2.4E-20 129.6 14.4 187 7-311 1-192 (194)
78 PRK05368 homoserine O-succinyl 99.7 5.2E-16 1.1E-20 144.5 13.0 139 116-279 98-240 (302)
79 PRK13526 glutamine amidotransf 99.6 9.5E-15 2.1E-19 125.9 13.3 165 7-279 3-168 (179)
80 PRK03619 phosphoribosylformylg 99.6 2.6E-14 5.7E-19 128.6 15.4 207 8-307 2-218 (219)
81 KOG0623|consensus 99.6 7.7E-15 1.7E-19 134.6 10.7 177 112-329 34-223 (541)
82 COG0047 PurL Phosphoribosylfor 99.6 1.5E-13 3.3E-18 120.7 17.9 205 5-309 1-230 (231)
83 PF01174 SNO: SNO glutamine am 99.6 4.9E-15 1.1E-19 127.1 7.7 170 33-310 9-187 (188)
84 PRK01175 phosphoribosylformylg 99.6 2.3E-13 5E-18 125.1 17.4 55 253-311 203-259 (261)
85 KOG2387|consensus 99.5 1.8E-13 3.8E-18 129.5 9.5 163 109-292 355-539 (585)
86 cd01740 GATase1_FGAR_AT Type 1 99.3 9.1E-12 2E-16 113.6 11.5 188 33-283 13-220 (238)
87 PF13507 GATase_5: CobB/CobQ-l 99.3 2.1E-11 4.6E-16 111.8 13.0 102 6-172 1-106 (259)
88 KOG3210|consensus 99.2 1E-10 2.3E-15 97.4 10.1 61 112-176 51-111 (226)
89 TIGR01857 FGAM-synthase phosph 99.0 1.7E-08 3.7E-13 109.3 20.2 49 252-307 1189-1237(1239)
90 PRK05297 phosphoribosylformylg 98.8 1.3E-07 2.9E-12 104.0 18.3 28 256-283 1237-1264(1290)
91 cd03130 GATase1_CobB Type 1 gl 98.8 2.3E-08 4.9E-13 88.7 9.2 84 28-173 9-92 (198)
92 PLN03206 phosphoribosylformylg 98.8 1.2E-07 2.5E-12 103.7 15.5 57 5-74 1036-1092(1307)
93 TIGR01735 FGAM_synt phosphorib 98.8 2.1E-07 4.4E-12 102.4 16.9 58 4-74 1053-1110(1310)
94 PRK06278 cobyrinic acid a,c-di 98.7 1.4E-07 3.1E-12 93.8 12.2 26 143-173 57-82 (476)
95 cd01750 GATase1_CobQ Type 1 gl 98.6 1.8E-07 3.9E-12 82.7 8.0 78 33-174 13-90 (194)
96 cd03131 GATase1_HTS Type 1 glu 98.5 2.2E-07 4.8E-12 80.3 6.1 112 115-247 60-174 (175)
97 PHA03366 FGAM-synthase; Provis 98.5 2.7E-06 5.9E-11 93.8 15.4 58 4-75 1026-1083(1304)
98 PF04204 HTS: Homoserine O-suc 98.4 1.5E-06 3.3E-11 80.7 10.0 140 116-280 97-240 (298)
99 PF07685 GATase_3: CobB/CobQ-l 98.4 1.8E-06 4E-11 73.7 9.6 58 113-174 3-60 (158)
100 TIGR01739 tegu_FGAM_synt herpe 98.4 1.3E-05 2.7E-10 88.2 17.0 58 4-75 927-984 (1202)
101 TIGR00379 cobB cobyrinic acid 98.3 4.5E-06 9.7E-11 83.2 9.8 79 33-173 260-338 (449)
102 PRK01077 cobyrinic acid a,c-di 98.2 7.8E-06 1.7E-10 81.5 9.8 95 7-174 246-340 (451)
103 cd03146 GAT1_Peptidase_E Type 98.2 9.7E-06 2.1E-10 72.7 8.8 57 111-172 74-130 (212)
104 TIGR01001 metA homoserine O-su 98.1 1.2E-05 2.7E-10 74.2 9.1 139 116-279 98-239 (300)
105 PRK13896 cobyrinic acid a,c-di 98.1 7.3E-06 1.6E-10 80.8 7.5 82 28-173 244-325 (433)
106 TIGR00313 cobQ cobyric acid sy 98.1 2.9E-06 6.3E-11 85.0 3.9 59 111-173 278-336 (475)
107 PRK00784 cobyric acid synthase 98.0 4.9E-06 1.1E-10 83.8 4.9 56 114-173 287-342 (488)
108 COG1492 CobQ Cobyric acid synt 98.0 6.1E-05 1.3E-09 74.2 11.3 58 112-173 285-342 (486)
109 cd03144 GATase1_ScBLP_like Typ 97.9 7.9E-06 1.7E-10 65.5 3.2 48 116-169 43-90 (114)
110 PRK05282 (alpha)-aspartyl dipe 97.6 0.00037 8.1E-09 63.2 8.8 30 143-174 102-131 (233)
111 cd01653 GATase1 Type 1 glutami 97.5 0.00023 5.1E-09 54.7 5.7 25 143-169 68-92 (115)
112 cd03128 GAT_1 Type 1 glutamine 97.2 0.00028 6E-09 51.8 3.3 49 115-169 44-92 (92)
113 cd03129 GAT1_Peptidase_E_like 97.1 0.0031 6.7E-08 56.3 9.3 57 111-172 74-130 (210)
114 cd03133 GATase1_ES1 Type 1 glu 97.0 0.00096 2.1E-08 59.7 5.3 58 115-174 80-143 (213)
115 PRK11780 isoprenoid biosynthes 97.0 0.0014 3E-08 59.0 5.4 57 115-173 83-145 (217)
116 KOG1907|consensus 96.9 0.0091 2E-07 62.3 11.2 57 5-74 1057-1113(1320)
117 COG1897 MetA Homoserine trans- 96.8 0.0046 1E-07 55.8 7.4 140 116-280 98-241 (307)
118 cd03169 GATase1_PfpI_1 Type 1 96.7 0.0025 5.4E-08 55.4 4.9 50 116-172 75-124 (180)
119 cd03147 GATase1_Ydr533c_like T 96.6 0.0026 5.6E-08 57.8 4.9 53 114-172 91-143 (231)
120 PF09825 BPL_N: Biotin-protein 96.6 0.076 1.6E-06 51.3 14.6 51 115-171 47-97 (367)
121 COG0693 ThiJ Putative intracel 96.6 0.003 6.4E-08 55.2 4.6 51 115-172 64-115 (188)
122 TIGR01382 PfpI intracellular p 96.5 0.0037 8.1E-08 53.3 4.8 50 116-172 59-108 (166)
123 cd03134 GATase1_PfpI_like A ty 96.4 0.0046 1E-07 52.7 4.8 50 116-172 61-110 (165)
124 PF01965 DJ-1_PfpI: DJ-1/PfpI 96.4 0.0023 4.9E-08 53.8 2.5 52 116-172 36-87 (147)
125 COG3442 Predicted glutamine am 96.4 0.011 2.5E-07 52.2 6.8 39 144-184 77-119 (250)
126 cd03141 GATase1_Hsp31_like Typ 96.3 0.005 1.1E-07 55.5 4.6 52 115-172 88-139 (221)
127 cd03140 GATase1_PfpI_3 Type 1 96.2 0.01 2.2E-07 51.0 5.5 49 116-172 59-107 (170)
128 PF03575 Peptidase_S51: Peptid 96.1 0.017 3.7E-07 48.9 6.7 79 33-169 3-82 (154)
129 cd03138 GATase1_AraC_2 AraC tr 96.0 0.013 2.8E-07 51.4 5.4 54 115-172 67-120 (195)
130 cd03148 GATase1_EcHsp31_like T 95.9 0.011 2.3E-07 53.8 4.8 52 115-172 94-145 (232)
131 cd03137 GATase1_AraC_1 AraC tr 95.9 0.018 3.8E-07 50.1 5.9 52 114-172 61-112 (187)
132 cd03132 GATase1_catalase Type 95.9 0.01 2.2E-07 49.3 4.2 50 117-172 62-111 (142)
133 cd03135 GATase1_DJ-1 Type 1 gl 95.8 0.013 2.8E-07 49.6 4.6 51 116-172 59-109 (163)
134 PRK04155 chaperone protein Hch 95.8 0.013 2.8E-07 54.9 4.9 52 115-172 145-196 (287)
135 TIGR01383 not_thiJ DJ-1 family 95.6 0.015 3.3E-07 50.2 4.4 52 115-172 61-112 (179)
136 PRK11574 oxidative-stress-resi 95.6 0.022 4.9E-07 50.0 5.5 50 116-171 65-114 (196)
137 COG1797 CobB Cobyrinic acid a, 95.5 0.022 4.7E-07 55.6 5.4 84 28-173 256-340 (451)
138 TIGR02069 cyanophycinase cyano 95.5 0.058 1.3E-06 49.6 8.0 28 143-172 105-132 (250)
139 COG3340 PepE Peptidase E [Amin 95.4 0.051 1.1E-06 48.1 6.6 76 35-168 54-130 (224)
140 cd03145 GAT1_cyanophycinase Ty 95.3 0.095 2.1E-06 47.1 8.4 58 110-172 76-133 (217)
141 PRK11249 katE hydroperoxidase 95.1 0.14 3.1E-06 53.8 10.1 50 117-172 658-707 (752)
142 KOG2764|consensus 94.7 0.049 1.1E-06 48.6 4.7 52 116-174 66-117 (247)
143 cd03136 GATase1_AraC_ArgR_like 94.5 0.079 1.7E-06 46.0 5.6 50 115-172 62-111 (185)
144 cd03139 GATase1_PfpI_2 Type 1 94.3 0.069 1.5E-06 46.1 4.9 51 115-172 60-110 (183)
145 PRK09393 ftrA transcriptional 94.2 0.091 2E-06 50.0 5.7 50 115-172 73-122 (322)
146 PF13278 DUF4066: Putative ami 93.7 0.091 2E-06 44.7 4.4 51 115-172 59-109 (166)
147 COG4090 Uncharacterized protei 84.7 0.63 1.4E-05 37.8 1.9 54 113-176 81-134 (154)
148 PRK13146 hisH imidazole glycer 80.8 2 4.3E-05 38.3 3.8 38 33-75 15-52 (209)
149 PRK03372 ppnK inorganic polyph 79.9 4.7 0.0001 38.2 6.2 36 8-51 7-42 (306)
150 PF06283 ThuA: Trehalose utili 78.3 48 0.001 29.3 12.0 83 113-211 48-137 (217)
151 TIGR02667 moaB_proteo molybden 78.1 14 0.0003 31.5 8.1 72 4-82 2-80 (163)
152 PRK04539 ppnK inorganic polyph 77.6 6.6 0.00014 37.0 6.4 35 8-50 7-41 (296)
153 PRK13152 hisH imidazole glycer 77.2 2.5 5.4E-05 37.3 3.3 36 33-75 13-48 (201)
154 TIGR00177 molyb_syn molybdenum 77.0 15 0.00032 30.5 7.8 50 28-78 25-79 (144)
155 PRK01215 competence damage-ind 76.8 9.2 0.0002 35.4 7.0 66 4-74 1-72 (264)
156 PRK01911 ppnK inorganic polyph 76.4 6.3 0.00014 37.1 5.9 34 9-50 3-36 (292)
157 COG0303 MoeA Molybdopterin bio 76.3 9.6 0.00021 37.6 7.3 74 4-78 174-255 (404)
158 KOG3210|consensus 76.2 4.5 9.7E-05 34.6 4.3 25 253-278 181-205 (226)
159 PRK10680 molybdopterin biosynt 76.0 12 0.00026 37.0 8.0 78 4-82 175-260 (411)
160 PRK13143 hisH imidazole glycer 74.9 3 6.6E-05 36.7 3.2 35 33-74 14-48 (200)
161 PRK13142 hisH imidazole glycer 74.4 3 6.5E-05 36.7 3.0 35 33-74 13-47 (192)
162 PRK03378 ppnK inorganic polyph 74.3 7.3 0.00016 36.6 5.8 36 7-50 6-41 (292)
163 PRK14497 putative molybdopteri 72.9 21 0.00044 36.7 8.9 78 4-82 177-262 (546)
164 PRK02649 ppnK inorganic polyph 72.8 8.6 0.00019 36.4 5.9 35 8-50 3-37 (305)
165 PRK14690 molybdopterin biosynt 72.7 19 0.00041 35.7 8.5 76 4-80 191-274 (419)
166 COG4285 Uncharacterized conser 72.1 5 0.00011 35.8 3.8 42 118-165 50-91 (253)
167 cd03522 MoeA_like MoeA_like. T 70.7 24 0.00052 33.5 8.4 73 4-82 157-236 (312)
168 cd00758 MoCF_BD MoCF_BD: molyb 70.7 24 0.00052 28.7 7.5 50 31-81 20-74 (133)
169 PRK13170 hisH imidazole glycer 70.5 4 8.7E-05 35.9 2.9 36 33-75 14-49 (196)
170 PRK13181 hisH imidazole glycer 69.7 5 0.00011 35.2 3.4 35 33-74 13-47 (199)
171 cd01748 GATase1_IGP_Synthase T 69.0 5.4 0.00012 34.9 3.4 35 33-74 12-46 (198)
172 PRK09065 glutamine amidotransf 68.6 4.8 0.0001 36.6 3.1 39 38-78 30-68 (237)
173 cd00886 MogA_MoaB MogA_MoaB fa 68.2 34 0.00074 28.6 8.1 48 33-81 23-77 (152)
174 CHL00188 hisH imidazole glycer 67.4 5.8 0.00013 35.4 3.3 35 33-74 15-49 (210)
175 PRK13016 dihydroxy-acid dehydr 67.2 1.1E+02 0.0023 31.7 12.5 67 5-76 41-126 (577)
176 PRK05665 amidotransferase; Pro 66.3 3.8 8.2E-05 37.4 1.9 17 62-78 55-71 (240)
177 cd00887 MoeA MoeA family. Memb 66.2 29 0.00063 34.0 8.3 77 4-81 166-250 (394)
178 PRK14491 putative bifunctional 65.6 27 0.00059 36.3 8.2 78 4-82 365-450 (597)
179 COG4917 EutP Ethanolamine util 64.9 12 0.00027 30.6 4.4 48 3-59 88-135 (148)
180 COG3660 Predicted nucleoside-d 63.7 1E+02 0.0023 28.7 10.5 110 4-164 159-273 (329)
181 PRK09417 mogA molybdenum cofac 62.5 54 0.0012 28.8 8.4 73 4-82 1-83 (193)
182 PRK02231 ppnK inorganic polyph 62.0 15 0.00034 34.1 5.1 34 117-165 42-75 (272)
183 PRK14498 putative molybdopteri 61.1 44 0.00095 35.0 8.9 78 4-82 184-269 (633)
184 PRK02155 ppnK NAD(+)/NADH kina 59.9 31 0.00068 32.4 6.9 34 8-49 7-40 (291)
185 COG4977 Transcriptional regula 59.1 21 0.00046 34.1 5.6 29 142-172 96-124 (328)
186 PRK13141 hisH imidazole glycer 59.0 9 0.0002 33.7 3.0 35 33-74 13-47 (205)
187 PF02514 CobN-Mg_chel: CobN/Ma 58.8 23 0.00049 39.6 6.5 64 5-74 70-141 (1098)
188 PRK14077 pnk inorganic polypho 58.5 19 0.0004 33.8 5.1 34 8-50 12-45 (287)
189 PF01174 SNO: SNO glutamine am 57.7 5.5 0.00012 34.8 1.3 16 112-127 28-43 (188)
190 cd00885 cinA Competence-damage 56.8 52 0.0011 28.2 7.2 45 33-78 22-71 (170)
191 PF03698 UPF0180: Uncharacteri 56.2 19 0.00041 26.9 3.8 38 33-77 11-48 (80)
192 COG0311 PDX2 Predicted glutami 56.0 7.6 0.00017 33.8 1.8 16 112-127 33-48 (194)
193 PRK01231 ppnK inorganic polyph 55.9 28 0.00062 32.7 5.9 35 8-50 6-40 (295)
194 PLN02935 Bifunctional NADH kin 53.6 31 0.00066 35.0 5.9 35 8-50 196-231 (508)
195 smart00852 MoCF_biosynth Proba 53.5 39 0.00085 27.4 5.8 48 33-81 21-73 (135)
196 PRK03094 hypothetical protein; 52.7 25 0.00053 26.3 3.9 38 34-78 12-49 (80)
197 TIGR01855 IMP_synth_hisH imida 52.7 14 0.0003 32.4 3.1 35 33-74 12-46 (196)
198 cd03128 GAT_1 Type 1 glutamine 51.2 19 0.00041 25.1 3.2 43 33-75 15-57 (92)
199 PRK14076 pnk inorganic polypho 50.0 33 0.00072 35.4 5.8 35 117-166 348-382 (569)
200 PRK13526 glutamine amidotransf 49.8 10 0.00023 32.9 1.8 15 112-126 34-48 (179)
201 COG0859 RfaF ADP-heptose:LPS h 49.5 1.1E+02 0.0023 29.1 8.9 85 6-126 175-260 (334)
202 PLN02771 carbamoyl-phosphate s 49.2 73 0.0016 31.5 7.7 95 33-127 168-291 (415)
203 TIGR01839 PHA_synth_II poly(R) 48.5 1E+02 0.0022 31.9 8.7 23 33-55 237-259 (560)
204 PLN02699 Bifunctional molybdop 48.2 97 0.0021 32.7 8.9 77 4-81 179-265 (659)
205 PRK03604 moaC bifunctional mol 48.2 93 0.002 29.6 8.0 69 8-82 157-232 (312)
206 PRK10355 xylF D-xylose transpo 47.8 1.3E+02 0.0028 28.4 9.2 62 5-73 24-90 (330)
207 PF07085 DRTGG: DRTGG domain; 47.8 49 0.0011 25.6 5.2 16 143-163 77-92 (105)
208 PF09075 STb_secrete: Heat-sta 46.6 4.1 8.8E-05 25.8 -0.9 16 158-173 31-46 (48)
209 cd01745 GATase1_2 Subgroup of 46.2 17 0.00038 31.6 2.6 20 111-130 47-66 (189)
210 COG3155 ElbB Uncharacterized p 45.3 24 0.00053 30.0 3.2 63 113-177 81-149 (217)
211 PF00994 MoCF_biosynth: Probab 42.9 39 0.00084 27.8 4.2 48 32-80 19-71 (144)
212 PRK12564 carbamoyl phosphate s 42.8 1.1E+02 0.0023 29.8 7.7 94 33-127 116-228 (360)
213 PRK04761 ppnK inorganic polyph 42.2 25 0.00054 32.2 3.0 38 114-166 22-59 (246)
214 PRK11572 copper homeostasis pr 41.0 1.3E+02 0.0028 27.6 7.5 41 37-77 108-154 (248)
215 COG4242 CphB Cyanophycinase an 40.9 48 0.001 30.4 4.6 29 142-172 128-156 (293)
216 PF07722 Peptidase_C26: Peptid 40.1 21 0.00045 31.9 2.2 21 108-128 49-69 (217)
217 PF03358 FMN_red: NADPH-depend 39.9 85 0.0019 25.6 5.8 39 8-53 3-41 (152)
218 cd01538 PBP1_ABC_xylose_bindin 39.7 1.6E+02 0.0034 26.8 8.2 46 28-73 14-64 (288)
219 PF04016 DUF364: Domain of unk 39.5 83 0.0018 26.2 5.7 40 35-74 23-72 (147)
220 COG1703 ArgK Putative periplas 39.3 61 0.0013 30.7 5.1 45 2-55 46-91 (323)
221 PRK10342 glycerate kinase I; P 38.7 33 0.00072 33.5 3.5 51 108-165 275-325 (381)
222 cd06318 PBP1_ABC_sugar_binding 38.5 2E+02 0.0044 25.7 8.6 45 28-72 14-63 (282)
223 PLN02929 NADH kinase 38.4 63 0.0014 30.6 5.2 20 143-165 77-96 (301)
224 cd06281 PBP1_LacI_like_5 Ligan 38.3 2.1E+02 0.0046 25.4 8.7 60 8-74 1-65 (269)
225 TIGR00045 glycerate kinase. Th 37.6 39 0.00085 33.0 3.8 50 108-164 274-323 (375)
226 PRK00784 cobyric acid synthase 37.4 32 0.00069 34.8 3.3 35 34-75 266-301 (488)
227 PRK09932 glycerate kinase II; 37.2 37 0.00079 33.2 3.5 51 108-165 275-325 (381)
228 COG4126 Hydantoin racemase [Am 36.9 62 0.0014 29.1 4.6 45 116-177 68-112 (230)
229 PTZ00300 pyruvate kinase; Prov 36.2 2.1E+02 0.0045 28.8 8.7 108 32-171 149-257 (454)
230 PRK00561 ppnK inorganic polyph 35.8 38 0.00083 31.2 3.3 36 116-166 32-67 (259)
231 COG0118 HisH Glutamine amidotr 35.5 33 0.00072 30.4 2.6 37 32-75 14-50 (204)
232 cd06305 PBP1_methylthioribose_ 35.2 2.4E+02 0.0052 25.0 8.5 46 28-73 14-64 (273)
233 PRK11780 isoprenoid biosynthes 34.1 53 0.0011 29.4 3.8 19 34-52 24-42 (217)
234 PRK14004 hisH imidazole glycer 34.1 41 0.00089 29.9 3.1 36 33-75 13-48 (210)
235 PF10662 PduV-EutP: Ethanolami 34.1 61 0.0013 27.1 3.9 40 4-51 88-128 (143)
236 COG0505 CarA Carbamoylphosphat 33.9 1.3E+02 0.0028 29.1 6.4 95 33-127 115-231 (368)
237 cd06273 PBP1_GntR_like_1 This 33.0 2.2E+02 0.0048 25.1 7.9 59 8-73 1-64 (268)
238 COG0521 MoaB Molybdopterin bio 32.7 1.1E+02 0.0024 26.3 5.3 48 33-81 30-83 (169)
239 cd06310 PBP1_ABC_sugar_binding 32.5 2.7E+02 0.0058 24.7 8.4 47 28-74 14-67 (273)
240 PRK08883 ribulose-phosphate 3- 32.5 2.5E+02 0.0054 25.1 7.9 23 32-54 70-92 (220)
241 PRK12838 carbamoyl phosphate s 32.1 1.3E+02 0.0029 29.1 6.4 89 33-127 114-218 (354)
242 PF01075 Glyco_transf_9: Glyco 32.0 1.2E+02 0.0026 27.0 5.9 11 5-15 104-114 (247)
243 cd06317 PBP1_ABC_sugar_binding 31.5 2.7E+02 0.0058 24.6 8.2 46 28-73 15-65 (275)
244 cd06309 PBP1_YtfQ_like Peripla 31.2 2.4E+02 0.0051 25.2 7.8 46 28-73 14-64 (273)
245 cd06295 PBP1_CelR Ligand bindi 31.1 3.3E+02 0.0071 24.2 8.8 66 7-73 4-73 (275)
246 PRK10653 D-ribose transporter 31.1 3.9E+02 0.0083 24.3 9.4 61 6-73 26-91 (295)
247 COG0800 Eda 2-keto-3-deoxy-6-p 30.5 86 0.0019 28.0 4.4 62 4-78 11-74 (211)
248 PRK03673 hypothetical protein; 30.1 1.2E+02 0.0026 29.8 5.9 39 36-74 27-70 (396)
249 PLN02727 NAD kinase 30.0 82 0.0018 34.4 4.9 36 116-166 742-777 (986)
250 COG0771 MurD UDP-N-acetylmuram 29.4 3.4E+02 0.0074 27.2 8.9 21 33-53 20-40 (448)
251 cd06322 PBP1_ABC_sugar_binding 29.4 2.8E+02 0.0061 24.5 8.0 59 8-73 1-64 (267)
252 TIGR00200 cinA_nterm competenc 29.3 2.2E+02 0.0049 28.1 7.6 47 34-81 24-75 (413)
253 PF00532 Peripla_BP_1: Peripla 29.3 1.6E+02 0.0035 27.0 6.4 61 7-74 2-66 (279)
254 PRK03670 competence damage-ind 29.1 2.4E+02 0.0052 25.9 7.3 41 34-74 24-70 (252)
255 cd01542 PBP1_TreR_like Ligand- 29.0 1.6E+02 0.0034 26.0 6.2 46 28-73 14-64 (259)
256 TIGR01368 CPSaseIIsmall carbam 28.8 2.4E+02 0.0053 27.3 7.6 94 33-127 112-224 (358)
257 cd06274 PBP1_FruR Ligand bindi 28.3 2E+02 0.0043 25.5 6.7 60 8-74 1-65 (264)
258 PLN02617 imidazole glycerol ph 28.2 67 0.0015 33.0 3.9 36 33-75 20-55 (538)
259 cd01537 PBP1_Repressors_Sugar_ 28.1 3.9E+02 0.0084 23.0 8.6 59 9-74 2-65 (264)
260 cd01747 GATase1_Glutamyl_Hydro 28.1 43 0.00093 31.1 2.3 19 110-128 47-65 (273)
261 KOG3974|consensus 28.1 4.1E+02 0.0088 24.8 8.3 93 28-160 40-136 (306)
262 PRK13525 glutamine amidotransf 28.0 41 0.00089 29.2 2.0 15 113-127 34-48 (189)
263 cd03789 GT1_LPS_heptosyltransf 27.7 4.5E+02 0.0097 23.8 9.1 29 33-61 143-171 (279)
264 cd06267 PBP1_LacI_sugar_bindin 27.6 3.8E+02 0.0082 23.2 8.4 47 28-74 14-65 (264)
265 KOG2585|consensus 27.5 3.1E+02 0.0068 27.3 8.0 61 4-74 264-326 (453)
266 PRK01175 phosphoribosylformylg 27.4 52 0.0011 30.4 2.7 101 4-172 1-105 (261)
267 PRK12493 magnesium chelatase s 27.4 1.4E+02 0.0031 34.2 6.5 58 6-69 253-320 (1310)
268 TIGR02193 heptsyl_trn_I lipopo 27.3 3.8E+02 0.0082 24.8 8.7 17 109-125 246-262 (319)
269 COG1929 Glycerate kinase [Carb 27.1 63 0.0014 31.2 3.2 50 108-164 275-324 (378)
270 cd06292 PBP1_LacI_like_10 Liga 26.8 1.9E+02 0.0042 25.6 6.4 59 8-73 1-64 (273)
271 PF09897 DUF2124: Uncharacteri 26.7 22 0.00048 29.7 0.1 45 118-172 81-125 (147)
272 TIGR03800 PLP_synth_Pdx2 pyrid 26.6 46 0.001 28.9 2.1 15 112-126 31-45 (184)
273 COG1214 Inactive homolog of me 26.5 91 0.002 27.9 4.0 40 116-164 57-97 (220)
274 PRK08091 ribulose-phosphate 3- 26.4 4.8E+02 0.011 23.5 8.7 23 32-54 80-102 (228)
275 cd06280 PBP1_LacI_like_4 Ligan 26.3 1.9E+02 0.0042 25.6 6.3 46 28-73 14-64 (263)
276 PRK02645 ppnK inorganic polyph 26.1 1.5E+02 0.0033 27.9 5.7 36 8-51 5-40 (305)
277 cd06302 PBP1_LsrB_Quorum_Sensi 25.6 3.5E+02 0.0076 24.7 8.1 45 28-72 14-64 (298)
278 PF00834 Ribul_P_3_epim: Ribul 25.3 2.2E+02 0.0048 25.1 6.2 23 32-54 69-91 (201)
279 cd06288 PBP1_sucrose_transcrip 25.2 2.2E+02 0.0047 25.1 6.4 60 8-73 1-65 (269)
280 PRK09722 allulose-6-phosphate 24.9 2.9E+02 0.0063 24.9 7.0 23 32-54 71-93 (229)
281 COG2100 Predicted Fe-S oxidore 24.3 2.5E+02 0.0053 27.1 6.4 31 30-60 201-231 (414)
282 TIGR00288 conserved hypothetic 24.2 4E+02 0.0087 22.7 7.2 32 116-163 104-136 (160)
283 PRK11366 puuD gamma-glutamyl-g 24.2 59 0.0013 29.8 2.4 18 111-128 55-72 (254)
284 cd06301 PBP1_rhizopine_binding 24.1 4.3E+02 0.0093 23.3 8.2 46 28-73 14-65 (272)
285 cd06298 PBP1_CcpA_like Ligand- 23.8 2.4E+02 0.0051 24.9 6.4 46 28-73 14-64 (268)
286 PF13407 Peripla_BP_4: Peripla 23.5 4.4E+02 0.0096 23.1 8.1 28 28-55 13-41 (257)
287 cd06272 PBP1_hexuronate_repres 23.5 1.9E+02 0.0042 25.5 5.7 59 8-73 1-60 (261)
288 PLN02832 glutamine amidotransf 23.4 55 0.0012 30.0 2.0 15 112-126 33-47 (248)
289 PRK04885 ppnK inorganic polyph 23.3 84 0.0018 29.1 3.3 37 117-166 35-71 (265)
290 PF03308 ArgK: ArgK protein; 22.7 4E+02 0.0088 24.7 7.4 40 6-54 29-68 (266)
291 PRK04155 chaperone protein Hch 22.7 1.1E+02 0.0024 28.6 4.0 17 36-52 83-99 (287)
292 PLN02699 Bifunctional molybdop 22.6 3.3E+02 0.0072 28.8 7.8 77 4-82 456-541 (659)
293 cd06284 PBP1_LacI_like_6 Ligan 22.5 2.5E+02 0.0055 24.6 6.3 46 28-73 14-64 (267)
294 PRK00911 dihydroxy-acid dehydr 22.4 6.5E+02 0.014 26.0 9.5 44 4-51 29-73 (552)
295 PRK00549 competence damage-ind 22.3 3.6E+02 0.0077 26.7 7.6 48 33-81 23-75 (414)
296 TIGR02634 xylF D-xylose ABC tr 22.2 4.7E+02 0.01 23.9 8.2 46 28-73 13-63 (302)
297 PRK05826 pyruvate kinase; Prov 22.1 4.7E+02 0.01 26.4 8.5 32 30-61 173-204 (465)
298 cd06293 PBP1_LacI_like_11 Liga 21.9 2.9E+02 0.0063 24.5 6.6 46 28-73 14-64 (269)
299 TIGR01304 IMP_DH_rel_2 IMP deh 21.9 7.1E+02 0.015 24.2 9.4 40 33-72 145-194 (369)
300 cd06271 PBP1_AglR_RafR_like Li 21.5 5.5E+02 0.012 22.4 8.5 47 28-74 18-69 (268)
301 cd06283 PBP1_RegR_EndR_KdgR_li 21.4 3E+02 0.0065 24.2 6.5 46 28-73 14-64 (267)
302 PRK05632 phosphate acetyltrans 21.1 5.5E+02 0.012 27.2 9.2 36 117-164 271-306 (684)
303 cd06321 PBP1_ABC_sugar_binding 21.0 4.6E+02 0.0099 23.2 7.7 46 28-73 14-66 (271)
304 cd06320 PBP1_allose_binding Pe 20.8 5.4E+02 0.012 22.7 8.2 46 28-73 14-66 (275)
305 PLN02327 CTP synthase 20.6 2E+02 0.0043 29.7 5.5 17 60-76 358-374 (557)
306 TIGR02405 trehalos_R_Ecol treh 20.5 3.5E+02 0.0076 24.8 7.0 61 6-73 59-124 (311)
307 cd06291 PBP1_Qymf_like Ligand 20.4 2.7E+02 0.0059 24.5 6.1 60 8-74 1-65 (265)
308 cd06279 PBP1_LacI_like_3 Ligan 20.1 2.7E+02 0.0059 25.0 6.0 46 28-73 19-65 (283)
309 cd01545 PBP1_SalR Ligand-bindi 20.1 2.9E+02 0.0063 24.3 6.1 60 8-74 1-66 (270)
No 1
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=100.00 E-value=3.6e-53 Score=391.69 Aligned_cols=271 Identities=44% Similarity=0.747 Sum_probs=232.1
Q ss_pred EEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccc
Q psy14047 9 IGILTQEPCLGVDKHFADF-KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAG 87 (350)
Q Consensus 9 Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~ 87 (350)
|||+|++.. ...+.+. ++|++++|+++|+++|+++++|+++.+.+.++++|+.+||||+|||++|+++..
T Consensus 1 igil~~~~~---~~~~~~~~~~yi~~~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~------ 71 (273)
T cd01747 1 IGILTQPVD---GAGSNKTGHSYIAASYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSG------ 71 (273)
T ss_pred CeEEeeecC---ccccccchhHHHHHHHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCccc------
Confidence 899999974 2222334 899999999999999999999999877788899999999999999998875211
Q ss_pred eeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHH
Q psy14047 88 AMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQ 167 (350)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~Q 167 (350)
|.+..+.+++.+.+.+++|+++||||||+|||
T Consensus 72 ------------------------------------------------~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~Q 103 (273)
T cd01747 72 ------------------------------------------------YARTAKIIYNLALERNDAGDYFPVWGTCLGFE 103 (273)
T ss_pred ------------------------------------------------cchHHHHHHHHHHHhhhcCCCCcEEEEcHHHH
Confidence 11112258888999988888899999999999
Q ss_pred HHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccc-cccccceEE
Q psy14047 168 LLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDN-GLAKEWKVL 246 (350)
Q Consensus 168 lLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~-~L~~~~~vl 246 (350)
+|+.++||++..+...+.++...|+++++....++||+.++..+.+.+.+...++++|++++.+.++..+ .|...++++
T Consensus 104 lL~~~~gg~~~~~~~~~~~~~~~~l~~t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l~~~~~vl 183 (273)
T cd01747 104 LLTYLTSGETLLLEATEATNSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLLSDFFNVL 183 (273)
T ss_pred HHHHHhCCCccccCCCccccceEEEEEccccccChhhhcCCHHHHHHHhcccHHHhhcccccCHhhcccccccccceEEE
Confidence 9999999975434555666777888887766778999999999988888888999999999987766543 577788999
Q ss_pred EEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHhh
Q psy14047 247 STNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFETEEEEKAAL 326 (350)
Q Consensus 247 a~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~~~~~~~~~~~~l 326 (350)
|++.++++.+||++++++++|+||+|||||++.+||.....++|+.++++.++++.++|+++||+|.|+|.+.+++.++|
T Consensus 184 a~~~d~~g~~fis~ie~~~~pi~gvQFHPEks~few~~~~~~~hs~~ai~~~q~~a~ffv~e~r~n~~~f~~~~~~~~~l 263 (273)
T cd01747 184 TTNDDWNGVEFISTVEAYKYPIYGVQWHPEKNAFEWKKSSSIPHSEEAIRLTQYFANFFVNEARKSNNRFESAEEETKHL 263 (273)
T ss_pred EEEecCCCceEEEEEEecCCceEEEecCCCcccccccccCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHhh
Confidence 99744457889999999999999999999999999998878999999999999999999999999999999999999999
Q ss_pred hhcccceeee
Q psy14047 327 IYNYCPEYTA 336 (350)
Q Consensus 327 ~~n~~~~~~~ 336 (350)
||||+|+||+
T Consensus 264 Iyn~~p~~~~ 273 (273)
T cd01747 264 IYNYKPTYTG 273 (273)
T ss_pred hccCCCccCC
Confidence 9999999874
No 2
>KOG1559|consensus
Probab=100.00 E-value=2.6e-53 Score=368.91 Aligned_cols=287 Identities=36% Similarity=0.610 Sum_probs=246.8
Q ss_pred CCCCEEEEEccCCCCCCCCCCCC-c-ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCC
Q psy14047 4 TERPIIGILTQEPCLGVDKHFAD-F-KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADD 81 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~-~-~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~ 81 (350)
+-||+|||+++++.. +.+.+.. . .+||+++||+.+|.+||+|+++.++++++.+.++|..++||+||||- ..
T Consensus 50 nykPvIGIL~hpg~g-~~~rl~n~t~~~yIAASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGw--ak--- 123 (340)
T KOG1559|consen 50 NYKPVIGILSHPGDG-ASGRLKNATGRSYIAASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGW--AK--- 123 (340)
T ss_pred ccCceeEEeccCCCC-ccceeccccCcchhHHHHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCcc--cc---
Confidence 458999999999763 3333333 3 89999999999999999999999999999999999999999999994 21
Q ss_pred cccccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEE
Q psy14047 82 GYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMG 161 (350)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlG 161 (350)
...|.+..+.++..+.+.+++|+++||+|
T Consensus 124 ---------------------------------------------------~~dY~~vvkkifnk~le~nDaGehFPvyg 152 (340)
T KOG1559|consen 124 ---------------------------------------------------RGDYFEVVKKIFNKVLERNDAGEHFPVYG 152 (340)
T ss_pred ---------------------------------------------------cccHHHHHHHHHHHHHhccCCccccchhh
Confidence 12344444568899999999999999999
Q ss_pred ehHHHHHHHHHhcCccccCCccCceeeeeeceeec-CCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccc-cc
Q psy14047 162 ICLGFQLLLYTSNNENELRTRCDCFYENLALEFMP-SFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDN-GL 239 (350)
Q Consensus 162 IC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~-~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~-~L 239 (350)
||+||.+|.....-+-..+...+......+++++. ....+.+|+++|.++..++..+..+...|.+++.+.+|+.+ .|
T Consensus 153 ~CLGFE~lsmiISqnrdile~~d~vd~AssLqF~~nvn~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gisp~nF~~N~~L 232 (340)
T KOG1559|consen 153 ICLGFELLSMIISQNRDILERFDAVDVASSLQFVGNVNIHGTMFQRFPPELLKKLSTDCLVMQNHKFGISPKNFQGNPAL 232 (340)
T ss_pred hhhhHHHHHHHHhcChhHHHhhcccccccceeeecccceeehhHhhCCHHHHHHhccchheeeccccccchhhccCCHHH
Confidence 99999999988763323355556555667777765 33467899999999999999999999999999999999988 89
Q ss_pred cccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCCCCCCH
Q psy14047 240 AKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFETE 319 (350)
Q Consensus 240 ~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~~~~~~ 319 (350)
.+.|.|+.++.+.+..+||..++.+++||+|+|||||+.++||.+.. +||+.++++..++..++||++||++.|+++|+
T Consensus 233 s~FFnilTT~~D~~~k~fvSTv~~~kYPvtgfQWHPEKnafEWgss~-IpHsedAiqvtqhaA~~lVsEARKs~nrp~Se 311 (340)
T KOG1559|consen 233 SSFFNILTTCTDGNSKTFVSTVESKKYPVTGFQWHPEKNAFEWGSSD-IPHSEDAIQVTQHAANYLVSEARKSLNRPESE 311 (340)
T ss_pred HHHHhheeeecCCCceEEEEeecceeccceeeeecCccCccccccCC-CCCChhHHHHHHHHHHHHHHHHHhhcCCccHH
Confidence 99999999985555778999999999999999999999999999854 99999999999999999999999999999997
Q ss_pred HHHHHhhhhcccceeeeccCCCCceEEeecC
Q psy14047 320 EEEKAALIYNYCPEYTAYIPGIGYDQTYLFK 350 (350)
Q Consensus 320 ~~~~~~l~~n~~~~~~~~~~~~~~~~~~~~~ 350 (350)
++.+.|||||+|+|+|+- +++|||||+|.
T Consensus 312 -kvlsnLIYnykPtY~Gy~-gsg~devYIFt 340 (340)
T KOG1559|consen 312 -KVLSNLIYNYKPTYCGYA-GSGYDEVYIFT 340 (340)
T ss_pred -HHHHHHHhccCcceeccc-cCccceEEeeC
Confidence 557779999999999987 79999999995
No 3
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=100.00 E-value=7.3e-39 Score=282.12 Aligned_cols=229 Identities=20% Similarity=0.189 Sum_probs=167.9
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCc
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDG 82 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~ 82 (350)
|+||+|||++..... ...+.+. ++|+...|++++..+|+.|+.||...+.+.+..+++.+|||++||| .||+|..|
T Consensus 1 ~~kpvIGIt~~~~~~--~~~~~~~~~~~~~~~yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg-~nV~P~~Y 77 (243)
T COG2071 1 MSKPVIGITADLIQE--IVGFDGNPWSYLPYDYVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGG-SNVDPSLY 77 (243)
T ss_pred CCCCEEEEecchhcc--ccccCCccHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCC-CcCCHHHc
Confidence 579999999987652 2335556 9999999999999999999999987788899999999999999999 59999999
Q ss_pred ccccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEe
Q psy14047 83 YAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGI 162 (350)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGI 162 (350)
+++|.+..+ .+.+++|.++. .|++ ++.++| +|||||
T Consensus 78 Gee~~~~~~------------------------------------~~~p~RD~~E~---aLi~---~ALe~~--iPILgI 113 (243)
T COG2071 78 GEEPSEKDG------------------------------------PYDPERDAFEL---ALIR---AALERG--IPILGI 113 (243)
T ss_pred CCCCCcccC------------------------------------CCCccccHHHH---HHHH---HHHHcC--CCEEEE
Confidence 888875532 12333566654 2444 444455 999999
Q ss_pred hHHHHHHHHHhcCccccCCccC------ceeeeeec----eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecC
Q psy14047 163 CLGFQLLLYTSNNENELRTRCD------CFYENLAL----EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPS 232 (350)
Q Consensus 163 C~G~QlLa~a~Gg~v~~~~~~~------~~~~~~~i----~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~ 232 (350)
|+|+|+|++++||++. +... .|....+. +.+....++.|.+.+... ...|+++|++++.
T Consensus 114 CRG~QllNVa~GGtL~--q~i~~~~~~~~H~~~~~~~~~~H~V~i~~~s~La~i~g~~-------~~~VNS~HhQaIk-- 182 (243)
T COG2071 114 CRGLQLLNVALGGTLY--QDISEQPGHIDHRQPNPVHIESHEVHIEPGSKLAKILGES-------EFMVNSFHHQAIK-- 182 (243)
T ss_pred ccchHHHHHHhcCeee--hhhhcccccccccCCCCcccceeEEEecCCccHHHhcCcc-------ceeecchHHHHHH--
Confidence 9999999999999863 2221 11110011 112222344443332211 1479999999998
Q ss_pred CCccccccccceEEEEeecCCCceEEEEEEcCC-ccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047 233 NFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKV-YPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG 311 (350)
Q Consensus 233 ~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~-~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~ 311 (350)
+|++++++.|++ +|+. ||||++++ ..++|||||||+...+ . ..++.||+.|+++|+.
T Consensus 183 -----~La~~L~V~A~a-~DG~---VEAie~~~~~fvlGVQWHPE~~~~~---~----------~~~~~LFe~F~~~~~~ 240 (243)
T COG2071 183 -----KLAPGLVVEARA-PDGT---VEAVEVKNDAFVLGVQWHPEYLVDT---N----------PLSLALFEAFVNACKK 240 (243)
T ss_pred -----HhCCCcEEEEEC-CCCc---EEEEEecCCceEEEEecChhhhccC---C----------hHHHHHHHHHHHHHHh
Confidence 999999999997 5665 89999986 4468999999965321 1 2478999999999987
Q ss_pred C
Q psy14047 312 S 312 (350)
Q Consensus 312 ~ 312 (350)
.
T Consensus 241 ~ 241 (243)
T COG2071 241 H 241 (243)
T ss_pred h
Confidence 5
No 4
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=100.00 E-value=2.3e-37 Score=277.86 Aligned_cols=205 Identities=27% Similarity=0.390 Sum_probs=125.8
Q ss_pred CEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccc
Q psy14047 7 PIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAK 85 (350)
Q Consensus 7 p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~ 85 (350)
|+|||++++... ....+... ++|++++|+++++++|++|++||+..+.+.++.+++++|||+||||..||+|..|++.
T Consensus 1 PvIGI~~~~~~~-~~~~~~~~~~~~i~~~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~ 79 (217)
T PF07722_consen 1 PVIGITAQPSES-DSSDFPGYPRSYIAASYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEE 79 (217)
T ss_dssp -EEEEE-EE-----SHHHHHC-SEEEEHHHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT--
T ss_pred CEEEEeCCcccc-ccCCcCchhHHHHhHHHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCc
Confidence 899999998531 12222333 8999999999999999999999999999999999999999999999999998777765
Q ss_pred cceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHH
Q psy14047 86 AGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLG 165 (350)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G 165 (350)
+.+... +....+.+++++...++.+.++||||||+|
T Consensus 80 ~~~~~~--------------------------------------------~~~~~rd~~e~~l~~~a~~~~~PilGICrG 115 (217)
T PF07722_consen 80 PSPESG--------------------------------------------YIDPERDIFELALIRNALGRGKPILGICRG 115 (217)
T ss_dssp -BTTSH--------------------------------------------HHHHHHHHHHHHHHHHHCCTT--EEEETHH
T ss_pred ccccCC--------------------------------------------CcCHHHHHHHHHHHHHHHhcCCCEEEEcHH
Confidence 542110 000011233444444444455999999999
Q ss_pred HHHHHHHhcCccccCCccCc----eeee-----eeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCcc
Q psy14047 166 FQLLLYTSNNENELRTRCDC----FYEN-----LALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTD 236 (350)
Q Consensus 166 ~QlLa~a~Gg~v~~~~~~~~----~~~~-----~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~ 236 (350)
||+|++++||++. .+... .... .+.+.+....++.|.+.+. .+...|+++|++++.
T Consensus 116 ~Q~lnv~~GGtl~--q~~~~~~~~~~~~~~~~~~~~h~v~i~~~s~l~~~~~-------~~~~~vns~Hhq~v~------ 180 (217)
T PF07722_consen 116 MQLLNVAFGGTLY--QDIPDQPGFPDHRQHPQDFPSHPVRIVPGSLLAKILG-------SEEIEVNSFHHQAVK------ 180 (217)
T ss_dssp HHHHHHHCCSSEE--SCCCCSS-EEECEE-S-TS--EEEEEETTSTCCCTSH-------HCTEEEEEEECEEEC------
T ss_pred HHHHHHHhCCCce--eecccCcCcccccccccccccccceeccCchHHHHhC-------cCcceeecchhhhhh------
Confidence 9999999999863 22221 1000 0111111122333322221 034579999999998
Q ss_pred ccccccceEEEEeecCCCceEEEEEEcCC--ccEEEEcccCC
Q psy14047 237 NGLAKEWKVLSTNSNNRGLKFISSVEHKV--YPFAGIQFHPE 276 (350)
Q Consensus 237 ~~L~~~~~vla~s~~~~~~e~v~ai~~~~--~~i~gvQfHPE 276 (350)
.|+++++++|++ .|+. +++|+..+ ++++|+|||||
T Consensus 181 -~l~~~l~v~A~s-~Dg~---iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 181 -PLGEGLRVTARS-PDGV---IEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp -CHHCCEEEEEEE-CTSS---EEEEEECCESS-EEEESS-CC
T ss_pred -ccCCCceEEEEe-cCCc---EEEEEEcCCCCCEEEEEeCCC
Confidence 899999999998 6776 66666666 46999999999
No 5
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=100.00 E-value=1.2e-35 Score=272.60 Aligned_cols=227 Identities=18% Similarity=0.247 Sum_probs=153.2
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCC-CHHHHHHhhcccceEEcCCCCcccccCCc
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDG 82 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~~dGli~~GG~~dv~~~~~ 82 (350)
|.||+|||+++.... . ....+++...|+++++++|+.|+.||... +.+.++++++.+|||||+||+.||+|..|
T Consensus 5 m~~P~Igi~~~~~~~---~--~~~~~~~~~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~y 79 (254)
T PRK11366 5 MNNPVIGVVMCRNRL---K--GHATQTLQEKYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLY 79 (254)
T ss_pred CCCCEEEEeCCCccc---C--cchHHHHHHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhc
Confidence 578999999865321 1 11267799999999999999999999754 35677788899999999999889998777
Q ss_pred ccccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEe
Q psy14047 83 YAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGI 162 (350)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGI 162 (350)
++.+.+-+ ....++.+ .+++++.+.+++ +|||||
T Consensus 80 g~~~~~~~--------------------------------------~~~~rD~~------e~~li~~a~~~~--~PILGI 113 (254)
T PRK11366 80 GENGDEPD--------------------------------------ADPGRDLL------SMALINAALERR--IPIFAI 113 (254)
T ss_pred CCCCCCCC--------------------------------------CChhHHHH------HHHHHHHHHHCC--CCEEEE
Confidence 65442110 00112222 334455555555 999999
Q ss_pred hHHHHHHHHHhcCccccCCc--cC---ceeee---------eeceeecCCCCCcccccCCchhHHhhcccceEEEeecce
Q psy14047 163 CLGFQLLLYTSNNENELRTR--CD---CFYEN---------LALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWC 228 (350)
Q Consensus 163 C~G~QlLa~a~Gg~v~~~~~--~~---~~~~~---------~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~ 228 (350)
|+|||+|++++||++. ... .. .+... .+.+.+....++.+...++. .....|+++|+++
T Consensus 114 CrG~Qllnva~GGtl~-~~~~~~~~~~~h~~~~~~~~~~~~~~~h~v~~~~~s~l~~i~~~------~~~~~Vns~H~q~ 186 (254)
T PRK11366 114 CRGLQELVVATGGSLH-RKLCEQPELLEHREDPELPVEQQYAPSHEVQVEEGGLLSALLPE------CSNFWVNSLHGQG 186 (254)
T ss_pred CHhHHHHHHHhCCeEe-ecccccccccccccCCccccccccCCceEEEECCCCcHHHhcCC------CceEEeehHHHHH
Confidence 9999999999999974 211 00 01100 01111111112221111110 0123689999999
Q ss_pred eecCCCccccccccceEEEEeecCCCceEEEEEEcCCccE-EEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047 229 ITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPF-AGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS 307 (350)
Q Consensus 229 v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i-~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~ 307 (350)
|. .||++++++|++ +++. ++||+++++++ +|||||||+...+. ...+.+|++|++
T Consensus 187 V~-------~l~~gl~v~A~s-~dg~---ieAie~~~~~~~~GVQwHPE~~~~~~-------------~~~~~lf~~fv~ 242 (254)
T PRK11366 187 AK-------VVSPRLRVEARS-PDGL---VEAVSVINHPFALGVQWHPEWNSSEY-------------ALSRILFEGFIT 242 (254)
T ss_pred Hh-------hcccceEEEEEc-CCCc---EEEEEeCCCCCEEEEEeCCCcCCCCC-------------chHHHHHHHHHH
Confidence 97 899999999996 6655 99999998885 99999999774321 124789999999
Q ss_pred HHHcC
Q psy14047 308 QASGS 312 (350)
Q Consensus 308 ~~~~~ 312 (350)
+|+..
T Consensus 243 ~~~~~ 247 (254)
T PRK11366 243 ACQHH 247 (254)
T ss_pred HHHHH
Confidence 99753
No 6
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.96 E-value=1.6e-28 Score=216.32 Aligned_cols=188 Identities=23% Similarity=0.255 Sum_probs=136.4
Q ss_pred EEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccce
Q psy14047 9 IGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGA 88 (350)
Q Consensus 9 Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~ 88 (350)
|||+++... ........+++..+++++|+.+|+.++++|...+.+.+...++.+||||||||+ +..|..|++.+.+
T Consensus 1 ~gi~~~~~~---~~~~~~~~~~~~~~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~-~~~~~~~~~~~~~ 76 (189)
T cd01745 1 IGITARLRE---EEGGYERRDYLNQYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGG-DVDPPLYGEEPHP 76 (189)
T ss_pred CEEcCcccc---ccCccHHHHHHHHHHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCC-CCChhhcCCCCCc
Confidence 689998764 222222378999999999999999999999988777777778999999999999 4554444332211
Q ss_pred eeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHH
Q psy14047 89 MIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQL 168 (350)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~Ql 168 (350)
.. .......+. ...+.++++.+.+ +||||||+|||+
T Consensus 77 ~~------------------------------------~~~~~~r~~------~~~~~~~~~~~~~--~PilgiC~G~Q~ 112 (189)
T cd01745 77 EL------------------------------------GPIDPERDA------FELALLRAALERG--KPILGICRGMQL 112 (189)
T ss_pred cc------------------------------------CCCChhHHH------HHHHHHHHHHHCC--CCEEEEcchHHH
Confidence 10 000000111 1345566666666 999999999999
Q ss_pred HHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEE
Q psy14047 169 LLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLST 248 (350)
Q Consensus 169 La~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~ 248 (350)
|+.++||++. ... .++.+|++.+. .+|++++++|+
T Consensus 113 l~~~~Gg~v~-~~~-------------------------------------~v~~~H~~~v~-------~~~~~~~vla~ 147 (189)
T cd01745 113 LNVALGGTLY-QDI-------------------------------------RVNSLHHQAIK-------RLADGLRVEAR 147 (189)
T ss_pred HHHHhCCeEE-cCC-------------------------------------ceechHHHHHh-------hcCCCCEEEEE
Confidence 9999999863 111 16789999997 78999999999
Q ss_pred eecCCCceEEEEEEcCC-ccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHH
Q psy14047 249 NSNNRGLKFISSVEHKV-YPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLV 306 (350)
Q Consensus 249 s~~~~~~e~v~ai~~~~-~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv 306 (350)
+ +++. ++++++++ .+++|+|||||+..... ..++.+|+.|+
T Consensus 148 ~-~d~~---vea~~~~~~~~~~gvQfHPE~~~~~~-------------~~~~~if~~f~ 189 (189)
T cd01745 148 A-PDGV---IEAIESPDRPFVLGVQWHPEWLADTD-------------PDSLKLFEAFV 189 (189)
T ss_pred C-CCCc---EEEEEeCCCCeEEEEecCCCcCcccC-------------chHhHHHHHhC
Confidence 6 5554 99999987 68999999999875310 24778888874
No 7
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.95 E-value=3.8e-27 Score=207.46 Aligned_cols=174 Identities=24% Similarity=0.350 Sum_probs=126.8
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE 112 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (350)
...++++++.|+++..+|++.+.+++..+ .+|||+||||+.+...
T Consensus 12 ~~l~~~l~~~g~~~~~~~~~~~~~~~~~~--~~~glii~Gg~~~~~~--------------------------------- 56 (188)
T TIGR00888 12 QLIARRLRELGVYSELVPNTTPLEEIREK--NPKGIILSGGPSSVYA--------------------------------- 56 (188)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHhhc--CCCEEEECCCCCCcCc---------------------------------
Confidence 56678999999999999998876666542 3679999999864320
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL 192 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i 192 (350)
.... .++ ++..+++ +||||||+|||+|+.++||++. ..... +....++
T Consensus 57 --------------------~~~~-----~~i---~~~~~~~--~PilGIC~G~Qll~~~lgg~v~-~~~~~-~~g~~~v 104 (188)
T TIGR00888 57 --------------------ENAP-----RAD---EKIFELG--VPVLGICYGMQLMAKQLGGEVG-RAEKR-EYGKAEL 104 (188)
T ss_pred --------------------CCch-----HHH---HHHHhCC--CCEEEECHHHHHHHHhcCceEe-cCCCc-cceeEEE
Confidence 0000 122 3333344 9999999999999999999874 22222 2234455
Q ss_pred eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047 193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ 272 (350)
Q Consensus 193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ 272 (350)
..+. .+++|..++..+ .++.+|++++. .||++++++|++ +++ .++++++++.|+||+|
T Consensus 105 ~~~~---~~~l~~~~~~~~--------~~~~~H~~~v~-------~l~~~~~vla~~-~~~---~v~a~~~~~~~~~g~Q 162 (188)
T TIGR00888 105 EILD---EDDLFRGLPDES--------TVWMSHGDKVK-------ELPEGFKVLATS-DNC---PVAAMAHEEKPIYGVQ 162 (188)
T ss_pred EEec---CCHhhcCCCCCc--------EEEeEccceee-------cCCCCCEEEEEC-CCC---CeEEEEECCCCEEEEe
Confidence 4432 456887776543 68999999997 799999999996 544 3899999988999999
Q ss_pred ccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH-HHH
Q psy14047 273 FHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS-QAS 310 (350)
Q Consensus 273 fHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~-~~~ 310 (350)
||||++... .+..|+++|++ .|+
T Consensus 163 fHPE~~~~~---------------~g~~i~~~f~~~~~~ 186 (188)
T TIGR00888 163 FHPEVTHTE---------------YGNELLENFVYDVCG 186 (188)
T ss_pred eCCccCCCh---------------hhHHHHHHHHHHhhC
Confidence 999987531 37889999999 665
No 8
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.95 E-value=4.3e-27 Score=206.44 Aligned_cols=171 Identities=19% Similarity=0.250 Sum_probs=124.7
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE 112 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (350)
..++++|+++|.++.+++++.+.+.+.+ ++.+||||++||+.+..
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~dgvil~gG~~~~~---------------------------------- 56 (184)
T cd01743 12 YNLVQYLRELGAEVVVVRNDEITLEELE-LLNPDAIVISPGPGHPE---------------------------------- 56 (184)
T ss_pred HHHHHHHHHcCCceEEEeCCCCCHHHHh-hcCCCEEEECCCCCCcc----------------------------------
Confidence 5688999999999999999877655434 47899999998885431
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL 192 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i 192 (350)
.+. ....+++..+++ +||||||+|||+|+.++||++. .......+...++
T Consensus 57 --------------------~~~-------~~~~i~~~~~~~--~PvlGIC~G~Qlla~~~Gg~v~-~~~~~~~g~~~~v 106 (184)
T cd01743 57 --------------------DAG-------ISLEIIRALAGK--VPILGVCLGHQAIAEAFGGKVV-RAPEPMHGKTSEI 106 (184)
T ss_pred --------------------cch-------hHHHHHHHHhcC--CCEEEECHhHHHHHHHhCCEEE-eCCCCCcCceeEE
Confidence 011 112222333344 9999999999999999999975 3443344444454
Q ss_pred eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCcccccccc--ceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047 193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKE--WKVLSTNSNNRGLKFISSVEHKVYPFAG 270 (350)
Q Consensus 193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~--~~vla~s~~~~~~e~v~ai~~~~~~i~g 270 (350)
... .+.+|..++..+ .++++|++++. .++.+ ++++|++ +++ .+++++++++|+||
T Consensus 107 ~~~----~~~~~~~~~~~~--------~~~~~H~~~v~-------~~~~~~~~~~la~~-~~~---~v~a~~~~~~~i~g 163 (184)
T cd01743 107 HHD----GSGLFKGLPQPF--------TVGRYHSLVVD-------PDPLPDLLEVTAST-EDG---VIMALRHRDLPIYG 163 (184)
T ss_pred EEC----CCccccCCCCCc--------EEEeCcEEEEe-------cCCCCceEEEEEeC-CCC---eEEEEEeCCCCEEE
Confidence 432 355777766543 69999999997 55655 9999986 444 59999999989999
Q ss_pred EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHH
Q psy14047 271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLV 306 (350)
Q Consensus 271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv 306 (350)
+|||||+..++| +..|+++|+
T Consensus 164 vQfHPE~~~~~~---------------g~~l~~~f~ 184 (184)
T cd01743 164 VQFHPESILTEY---------------GLRLLENFL 184 (184)
T ss_pred EeeCCCcCCCcc---------------hHHHHHhhC
Confidence 999999988776 567888873
No 9
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.95 E-value=4e-27 Score=207.45 Aligned_cols=177 Identities=19% Similarity=0.275 Sum_probs=126.6
Q ss_pred hHHHHHHHHHcCCeEEEEecCC-CHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhh
Q psy14047 32 PASYVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLK 110 (350)
Q Consensus 32 ~~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (350)
...++++|+++|..+.+++++. +.+.++. + ..||||++||+.+.. +
T Consensus 12 ~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~-~-~~dglIlsgGpg~~~--d----------------------------- 58 (189)
T PRK05670 12 TYNLVQYLGELGAEVVVYRNDEITLEEIEA-L-NPDAIVLSPGPGTPA--E----------------------------- 58 (189)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCCHHHHHh-C-CCCEEEEcCCCCChH--H-----------------------------
Confidence 3678899999999999999975 4444433 3 389999999986542 0
Q ss_pred HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeee
Q psy14047 111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENL 190 (350)
Q Consensus 111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~ 190 (350)
... ..+++++ .+++ +||||||+|||+|+.++||++. ......++...
T Consensus 59 ----------------------~~~-------~~~~l~~-~~~~--~PvLGIClG~Qlla~alGg~v~-~~~~~~~g~~~ 105 (189)
T PRK05670 59 ----------------------AGI-------SLELIRE-FAGK--VPILGVCLGHQAIGEAFGGKVV-RAKEIMHGKTS 105 (189)
T ss_pred ----------------------cch-------HHHHHHH-hcCC--CCEEEECHHHHHHHHHhCCEEE-ecCCcccCcee
Confidence 001 1122222 2333 9999999999999999999975 33333334333
Q ss_pred eceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047 191 ALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG 270 (350)
Q Consensus 191 ~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g 270 (350)
++. ...+.+|..++.. ..++++|++.+... .+|++++++|++ +++. ++++++++.|+||
T Consensus 106 ~v~----~~~~~l~~~~~~~--------~~v~~~H~~~v~~~-----~lp~~~~~la~s-~~~~---i~a~~~~~~~~~g 164 (189)
T PRK05670 106 PIE----HDGSGIFAGLPNP--------FTVTRYHSLVVDRE-----SLPDCLEVTAWT-DDGE---IMGVRHKELPIYG 164 (189)
T ss_pred EEE----eCCCchhccCCCC--------cEEEcchhheeccc-----cCCCceEEEEEe-CCCc---EEEEEECCCCEEE
Confidence 433 1245677776654 36999999999521 489999999997 5554 9999998889999
Q ss_pred EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHH
Q psy14047 271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQAS 310 (350)
Q Consensus 271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~ 310 (350)
+|||||+... ..+..||+.|++.+|
T Consensus 165 vQfHPE~~~~---------------~~g~~i~~~F~~~~~ 189 (189)
T PRK05670 165 VQFHPESILT---------------EHGHKLLENFLELAR 189 (189)
T ss_pred EeeCCCcCCC---------------cchHHHHHHHHHhhC
Confidence 9999998642 137899999999864
No 10
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.95 E-value=7e-27 Score=209.42 Aligned_cols=182 Identities=19% Similarity=0.265 Sum_probs=130.2
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCH-HHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhh
Q psy14047 32 PASYVKAVEASGARVAPIFIGNPE-AYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLK 110 (350)
Q Consensus 32 ~~~yv~~l~~~G~~~v~i~~~~~~-~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (350)
...++++|++.|..+..++++.+. +.+..+++.+|||||+||+.+..
T Consensus 13 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~-------------------------------- 60 (214)
T PRK07765 13 VFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPE-------------------------------- 60 (214)
T ss_pred HHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChh--------------------------------
Confidence 456889999999999999998642 34444567899999999985421
Q ss_pred HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeee
Q psy14047 111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENL 190 (350)
Q Consensus 111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~ 190 (350)
.... ..++++++.+++ +||||||+|||+|+.++||++. ....+.++...
T Consensus 61 ----------------------~~~~------~~~~i~~~~~~~--~PiLGIC~G~Qlla~a~GG~v~-~~~~~~~g~~~ 109 (214)
T PRK07765 61 ----------------------RAGA------SIDMVRACAAAG--TPLLGVCLGHQAIGVAFGATVD-RAPELLHGKTS 109 (214)
T ss_pred ----------------------hcch------HHHHHHHHHhCC--CCEEEEccCHHHHHHHhCCEEe-eCCCCccCcee
Confidence 0111 224445545444 9999999999999999999975 33333344434
Q ss_pred eceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047 191 ALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG 270 (350)
Q Consensus 191 ~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g 270 (350)
++... .+.+|.+++..+ .++++|++.+.+. .+|++++++|++ .++. ++++++++.++||
T Consensus 110 ~v~~~----~~~~~~~~~~~~--------~v~~~H~~~v~~~-----~lp~~~~vla~s-~~~~---vqa~~~~~~~i~g 168 (214)
T PRK07765 110 SVHHT----GVGVLAGLPDPF--------TATRYHSLTILPE-----TLPAELEVTART-DSGV---IMAVRHRELPIHG 168 (214)
T ss_pred EEEEC----CCccccCCCCcc--------EEEecchheEecc-----cCCCceEEEEEc-CCCc---EEEEEeCCCCEEE
Confidence 44332 223666655533 5899999999643 589999999997 5554 8999999888999
Q ss_pred EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcC
Q psy14047 271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGS 312 (350)
Q Consensus 271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~ 312 (350)
+|||||+..++ .+..+...|+..|...
T Consensus 169 vQfHPE~~~t~---------------~g~~~l~~f~~~~~~~ 195 (214)
T PRK07765 169 VQFHPESVLTE---------------GGHRMLANWLTVCGWA 195 (214)
T ss_pred EeeCCCcccCc---------------chHHHHHHHHHHhccc
Confidence 99999986431 3667777888888554
No 11
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.95 E-value=1.2e-26 Score=198.88 Aligned_cols=144 Identities=24% Similarity=0.451 Sum_probs=112.5
Q ss_pred CCEEEe-CCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeeceeec
Q psy14047 118 VNGVLI-PGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMP 196 (350)
Q Consensus 118 ~dgvIi-pG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~ 196 (350)
+|+||+ ||+|.+.+. . ...+.++++ . +++||||||+|||.|+.++||++. +...+.++....++.
T Consensus 46 pd~iviSPGPG~P~d~----G----~~~~~i~~~-~--~~~PiLGVCLGHQai~~~fGg~V~-~a~~~~HGK~s~i~h-- 111 (191)
T COG0512 46 PDAIVISPGPGTPKDA----G----ISLELIRRF-A--GRIPILGVCLGHQAIAEAFGGKVV-RAKEPMHGKTSIITH-- 111 (191)
T ss_pred CCEEEEcCCCCChHHc----c----hHHHHHHHh-c--CCCCEEEECccHHHHHHHhCCEEE-ecCCCcCCeeeeeec--
Confidence 466677 888776421 1 134555655 2 249999999999999999999986 666778887664432
Q ss_pred CCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCC
Q psy14047 197 SFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPE 276 (350)
Q Consensus 197 ~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE 276 (350)
.++.+|+++|+++ .+..||+..+.+. .+|+.++++|++ ++++ .|++++|+++|+||+|||||
T Consensus 112 --~g~~iF~glp~~f--------~v~RYHSLvv~~~-----~lP~~l~vtA~~-~d~~--~IMai~h~~~pi~gvQFHPE 173 (191)
T COG0512 112 --DGSGLFAGLPNPF--------TVTRYHSLVVDPE-----TLPEELEVTAES-EDGG--VIMAVRHKKLPIYGVQFHPE 173 (191)
T ss_pred --CCcccccCCCCCC--------EEEeeEEEEecCC-----CCCCceEEEEEe-CCCC--EEEEEeeCCCCEEEEecCCc
Confidence 3578999999876 5999999999844 489999999997 5554 59999999999999999999
Q ss_pred cCCccccccCCCCCchHHHHhHHHHHHHHHHH
Q psy14047 277 KNAYEWKLTQDNPHTRIAIENARYFFDWLVSQ 308 (350)
Q Consensus 277 ~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~ 308 (350)
+..++. +.++.++|++.
T Consensus 174 SilT~~---------------G~~il~Nfl~~ 190 (191)
T COG0512 174 SILTEY---------------GHRILENFLRL 190 (191)
T ss_pred cccccc---------------hHHHHHHHHhh
Confidence 987653 68899999875
No 12
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.95 E-value=1.2e-26 Score=203.78 Aligned_cols=173 Identities=17% Similarity=0.246 Sum_probs=124.6
Q ss_pred HHHHHHHHHcCCeEEEEecCC-CHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047 33 ASYVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI 111 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (350)
...+++|++.|+.+..++.+. +.+.+.. .+.||||++||+.+.. +
T Consensus 13 ~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iils~GPg~p~--~------------------------------ 58 (187)
T PRK08007 13 WNLYQYFCELGADVLVKRNDALTLADIDA--LKPQKIVISPGPCTPD--E------------------------------ 58 (187)
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCEEEEcCCCCChH--H------------------------------
Confidence 347788999999999999875 4444433 3689999999996532 0
Q ss_pred HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA 191 (350)
Q Consensus 112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~ 191 (350)
... ..+.++. .+++ +||||||+|||+|+.++||++. ....+.++...+
T Consensus 59 ----------------------~~~------~~~~~~~-~~~~--~PiLGIClG~Q~la~a~Gg~v~-~~~~~~~g~~~~ 106 (187)
T PRK08007 59 ----------------------AGI------SLDVIRH-YAGR--LPILGVCLGHQAMAQAFGGKVV-RAAKVMHGKTSP 106 (187)
T ss_pred ----------------------CCc------cHHHHHH-hcCC--CCEEEECHHHHHHHHHcCCEEE-eCCCcccCCceE
Confidence 011 1122222 2333 9999999999999999999985 344444554455
Q ss_pred ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047 192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI 271 (350)
Q Consensus 192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv 271 (350)
+... .+.+|.+++.. ..++++|++++.+. .+|++++++|++ +++. ++++++++.|+||+
T Consensus 107 v~~~----~~~l~~~~~~~--------~~v~~~H~~~v~~~-----~lp~~~~v~a~~-~~~~---i~a~~~~~~~i~Gv 165 (187)
T PRK08007 107 ITHN----GEGVFRGLANP--------LTVTRYHSLVVEPD-----SLPACFEVTAWS-ETRE---IMGIRHRQWDLEGV 165 (187)
T ss_pred EEEC----CCCcccCCCCC--------cEEEEcchhEEccC-----CCCCCeEEEEEe-CCCc---EEEEEeCCCCEEEE
Confidence 5432 33477776554 36999999999533 589999999997 6555 89999999999999
Q ss_pred cccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047 272 QFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS 307 (350)
Q Consensus 272 QfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~ 307 (350)
|||||+..++ .++.++++|++
T Consensus 166 QfHPE~~~t~---------------~G~~il~nFl~ 186 (187)
T PRK08007 166 QFHPESILSE---------------QGHQLLANFLH 186 (187)
T ss_pred EeCCcccCCc---------------chHHHHHHHhh
Confidence 9999987542 37889999975
No 13
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.95 E-value=2.6e-26 Score=201.97 Aligned_cols=175 Identities=18% Similarity=0.238 Sum_probs=124.8
Q ss_pred hHHHHHHHHHcCCeEEEEecCC-CHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhh
Q psy14047 32 PASYVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLK 110 (350)
Q Consensus 32 ~~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (350)
...++++|++.|+.+++++++. +.+.+.+ ..+|||+|+||+.+.. +
T Consensus 12 t~~~~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iilsgGpg~p~--~----------------------------- 58 (188)
T TIGR00566 12 TYNLVQYFCELGAEVVVKRNDSLTLQEIEA--LLPLLIVISPGPCTPN--E----------------------------- 58 (188)
T ss_pred HHHHHHHHHHcCCceEEEECCCCCHHHHHh--cCCCEEEEcCCCCChh--h-----------------------------
Confidence 3577889999999999999764 4555543 2589999999996542 0
Q ss_pred HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeee
Q psy14047 111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENL 190 (350)
Q Consensus 111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~ 190 (350)
.... .++++++ +++ +||||||+|||+|+.++||++. ......++...
T Consensus 59 -----------------------~~~~------~~~i~~~-~~~--~PvLGIC~G~Qll~~~~GG~v~-~~~~~~~g~~~ 105 (188)
T TIGR00566 59 -----------------------AGIS------LEAIRHF-AGK--LPILGVCLGHQAMGQAFGGDVV-RANTVMHGKTS 105 (188)
T ss_pred -----------------------cchh------HHHHHHh-ccC--CCEEEECHHHHHHHHHcCCEEe-eCCCccccceE
Confidence 0111 1223333 233 9999999999999999999985 33333445455
Q ss_pred eceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047 191 ALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG 270 (350)
Q Consensus 191 ~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g 270 (350)
++... .+.++.+++.. ..++++|++.+.+. .+|++++++|++ .+++ .+++++++++|+||
T Consensus 106 ~v~~~----~~~~~~~l~~~--------~~v~~~H~~~v~~~-----~l~~~~~v~a~s-~~~~--~v~a~~~~~~~i~g 165 (188)
T TIGR00566 106 EIEHN----GAGIFRGLFNP--------LTATRYHSLVVEPE-----TLPTCFPVTAWE-EENI--EIMAIRHRDLPLEG 165 (188)
T ss_pred EEEEC----CCccccCCCCC--------cEEEEcccceEecc-----cCCCceEEEEEc-CCCC--EEEEEEeCCCCEEE
Confidence 55432 23456655543 35899999999543 589999999996 5443 49999999999999
Q ss_pred EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047 271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS 307 (350)
Q Consensus 271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~ 307 (350)
+|||||+..++ .+..++++|+.
T Consensus 166 vQfHPE~~~t~---------------~G~~il~nfl~ 187 (188)
T TIGR00566 166 VQFHPESILSE---------------QGHQLLANFLH 187 (188)
T ss_pred EEeCCCccCCc---------------ccHHHHHHHHh
Confidence 99999987542 37889999975
No 14
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.95 E-value=3.2e-26 Score=202.32 Aligned_cols=178 Identities=15% Similarity=0.190 Sum_probs=125.5
Q ss_pred HHHHHHHHHcCCeEEEEecCC-CHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047 33 ASYVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI 111 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (350)
..++++|+++|..+.+++++. +.+.+.. ...++|+++||+.++. +
T Consensus 13 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~--~~~~~iilsgGp~~~~--~------------------------------ 58 (193)
T PRK08857 13 YNLYQYFCELGAQVKVVRNDEIDIDGIEA--LNPTHLVISPGPCTPN--E------------------------------ 58 (193)
T ss_pred HHHHHHHHHCCCcEEEEECCCCCHHHHhh--CCCCEEEEeCCCCChH--H------------------------------
Confidence 458899999999999999874 4333322 2478999999986642 0
Q ss_pred HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA 191 (350)
Q Consensus 112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~ 191 (350)
..... .+++. .+++ +||||||+|||+|+.++||++. ......++...+
T Consensus 59 ---------------------~~~~~----~~i~~----~~~~--~PiLGIClG~Qlia~a~Gg~v~-~~~~~~~G~~~~ 106 (193)
T PRK08857 59 ---------------------AGISL----QAIEH----FAGK--LPILGVCLGHQAIAQVFGGQVV-RARQVMHGKTSP 106 (193)
T ss_pred ---------------------CcchH----HHHHH----hcCC--CCEEEEcHHHHHHHHHhCCEEE-eCCCceeCceEE
Confidence 00011 12222 2334 9999999999999999999975 333333333333
Q ss_pred ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeec-CCCceEEEEEEcCCccEEE
Q psy14047 192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSN-NRGLKFISSVEHKVYPFAG 270 (350)
Q Consensus 192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~-~~~~e~v~ai~~~~~~i~g 270 (350)
+.. ..+.+|.+++..+ .++++|++++.+. .||++++++|++.. ++..+.++++++++.|+||
T Consensus 107 ~~~----~~~~l~~~~~~~~--------~v~~~H~~~v~~~-----~lp~~~~v~a~s~~~~~~~~~i~~~~~~~~pi~g 169 (193)
T PRK08857 107 IRH----TGRSVFKGLNNPL--------TVTRYHSLVVKND-----TLPECFELTAWTELEDGSMDEIMGFQHKTLPIEA 169 (193)
T ss_pred EEE----CCCcccccCCCcc--------EEEEccEEEEEcC-----CCCCCeEEEEEecCcCCCcceEEEEEeCCCCEEE
Confidence 332 1345777765543 6999999998533 58999999998721 4434579999999999999
Q ss_pred EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHH
Q psy14047 271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQ 308 (350)
Q Consensus 271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~ 308 (350)
+|||||+..+++ +..|+++|++.
T Consensus 170 vQfHPE~~~t~~---------------g~~i~~nFl~~ 192 (193)
T PRK08857 170 VQFHPESIKTEQ---------------GHQLLANFLAR 192 (193)
T ss_pred EeeCCCcCCCcc---------------hHHHHHHHHhh
Confidence 999999986654 67899999864
No 15
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.94 E-value=3.6e-26 Score=199.48 Aligned_cols=168 Identities=21% Similarity=0.326 Sum_probs=117.0
Q ss_pred HHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHHH
Q psy14047 34 SYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEK 113 (350)
Q Consensus 34 ~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (350)
.++++|+++|++++++|++.+.+.+. ...+|||+++||+.+..
T Consensus 11 ~~~~~l~~~G~~~~~~~~~~~~~~~~--~~~~dgiil~GG~~~~~----------------------------------- 53 (178)
T cd01744 11 NILRELLKRGCEVTVVPYNTDAEEIL--KLDPDGIFLSNGPGDPA----------------------------------- 53 (178)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHh--hcCCCEEEECCCCCChh-----------------------------------
Confidence 57999999999999999987655442 35789999999985431
Q ss_pred HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeece
Q psy14047 114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALE 193 (350)
Q Consensus 114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~ 193 (350)
. +. ...++++++.+++ +||||||+|||+|+.++||++. ....+.++...++.
T Consensus 54 -------------------~--~~----~~~~~~~~~~~~~--~PvlGIC~G~Q~l~~~~Gg~v~-~~~~~~~g~~~~v~ 105 (178)
T cd01744 54 -------------------L--LD----EAIKTVRKLLGKK--IPIFGICLGHQLLALALGAKTY-KMKFGHRGSNHPVK 105 (178)
T ss_pred -------------------H--hH----HHHHHHHHHHhCC--CCEEEECHHHHHHHHHcCCcee-cCCCCCCCCceeeE
Confidence 0 11 1334455555555 9999999999999999999974 22222233233332
Q ss_pred eecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcc
Q psy14047 194 FMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQF 273 (350)
Q Consensus 194 ~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQf 273 (350)
... ... ...++++|++++.++ .+|++++++|++.+++. ++++++++.|+||+||
T Consensus 106 ~~~---~~~---------------~~~v~~~H~~~v~~~-----~lp~~~~v~a~s~~~~~---i~a~~~~~~~i~GvQf 159 (178)
T cd01744 106 DLI---TGR---------------VYITSQNHGYAVDPD-----SLPGGLEVTHVNLNDGT---VEGIRHKDLPVFSVQF 159 (178)
T ss_pred EcC---CCC---------------cEEEEcCceEEEccc-----ccCCceEEEEEECCCCc---EEEEEECCCCeEEEee
Confidence 110 000 124788999999643 58999999999623343 8999999889999999
Q ss_pred cCCcCCccccccCCCCCchHHHHhHHHHHHHHH
Q psy14047 274 HPEKNAYEWKLTQDNPHTRIAIENARYFFDWLV 306 (350)
Q Consensus 274 HPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv 306 (350)
|||+...+. ..+.+|..|+
T Consensus 160 HPE~~~~~~--------------~~~~lf~~f~ 178 (178)
T cd01744 160 HPEASPGPH--------------DTEYLFDEFL 178 (178)
T ss_pred CCCCCCCCC--------------CchHhHhhhC
Confidence 999875321 2457888874
No 16
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.94 E-value=1.2e-26 Score=202.99 Aligned_cols=170 Identities=21% Similarity=0.318 Sum_probs=122.4
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE 112 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (350)
..+.++|+++|+.+++++++.+.+. ..++++||||+|||+.++. +
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~~~~--~~~~~~dgvIl~Gg~~~~~--~------------------------------- 56 (181)
T cd01742 12 HLIARRVRELGVYSEILPNTTPLEE--IKLKNPKGIILSGGPSSVY--E------------------------------- 56 (181)
T ss_pred HHHHHHHHhcCceEEEecCCCChhh--hcccCCCEEEECCCccccc--c-------------------------------
Confidence 4578899999999999999876542 2468899999999985432 0
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL 192 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i 192 (350)
+...+ +.+.+.+ .+ +|+||||+|||+|+.++||++. ....+ +....++
T Consensus 57 ---------------------~~~~~----~~~~~~~---~~--~PilGIC~G~Qll~~~~gg~v~-~~~~~-~~G~~~v 104 (181)
T cd01742 57 ---------------------EDAPR----VDPEIFE---LG--VPVLGICYGMQLIAKALGGKVE-RGDKR-EYGKAEI 104 (181)
T ss_pred ---------------------cccch----hhHHHHh---cC--CCEEEEcHHHHHHHHhcCCeEE-eCCCC-cceEEEE
Confidence 00001 2222332 23 9999999999999999999874 22222 2233343
Q ss_pred eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047 193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ 272 (350)
Q Consensus 193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ 272 (350)
.. ...+++|..++..+ .++++|++.+. .+|++++++|++ +++. ++++++++.++||+|
T Consensus 105 ~~---~~~~~l~~~~~~~~--------~~~~~H~~~v~-------~l~~~~~~la~~-~~~~---i~a~~~~~~~~~g~Q 162 (181)
T cd01742 105 EI---DDSSPLFEGLPDEQ--------TVWMSHGDEVV-------KLPEGFKVIASS-DNCP---VAAIANEEKKIYGVQ 162 (181)
T ss_pred Ee---cCCChhhcCCCCce--------EEEcchhhhhh-------hcCCCcEEEEeC-CCCC---EEEEEeCCCcEEEEE
Confidence 32 23567888877643 58999999996 799999999997 5454 899999888999999
Q ss_pred ccCCcCCccccccCCCCCchHHHHhHHHHHHHHH
Q psy14047 273 FHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLV 306 (350)
Q Consensus 273 fHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv 306 (350)
||||++..+ .+.+++++|+
T Consensus 163 fHPE~~~~~---------------~g~~ll~~f~ 181 (181)
T cd01742 163 FHPEVTHTE---------------KGKEILKNFL 181 (181)
T ss_pred cCCccccCc---------------ChHHHHHhhC
Confidence 999988532 3678888773
No 17
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.94 E-value=7.9e-26 Score=201.42 Aligned_cols=189 Identities=18% Similarity=0.154 Sum_probs=130.7
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE 112 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (350)
...++.|++.|..+..++++.+.+++.. ...||||++||+.++.
T Consensus 15 ~nl~~~l~~~g~~~~v~~~~~~~~~l~~--~~~~~iIlsgGPg~~~---------------------------------- 58 (208)
T PRK05637 15 YNLVDAFAVAGYKCTVFRNTVPVEEILA--ANPDLICLSPGPGHPR---------------------------------- 58 (208)
T ss_pred HHHHHHHHHCCCcEEEEeCCCCHHHHHh--cCCCEEEEeCCCCCHH----------------------------------
Confidence 4578899999999999999866555542 3678999999986542
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL 192 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i 192 (350)
.... ..++++.+. . ++||||||+|||+|+.++||++.. .. ..++...++
T Consensus 59 --------------------d~~~------~~~li~~~~-~--~~PiLGIClG~Qlla~alGG~V~~-~~-~~~G~~~~i 107 (208)
T PRK05637 59 --------------------DAGN------MMALIDRTL-G--QIPLLGICLGFQALLEHHGGKVEP-CG-PVHGTTDNM 107 (208)
T ss_pred --------------------HhhH------HHHHHHHHh-C--CCCEEEEcHHHHHHHHHcCCeecc-CC-cccceEEEe
Confidence 0000 112222222 2 399999999999999999999752 22 233433344
Q ss_pred eeecCCCCCcccccCCchhH----HhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccE
Q psy14047 193 EFMPSFRQSLLYSRAPIHVL----QELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPF 268 (350)
Q Consensus 193 ~~~~~~~~~~lf~~~~~~~~----~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i 268 (350)
..+.....+++|..++.... ..++.+..|+++|++.+. .+|++++++|++ +++...+++++++.+.++
T Consensus 108 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v~-------~lp~~~~vlA~s-~~~~~~v~~a~~~~~~~~ 179 (208)
T PRK05637 108 ILTDAGVQSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGCV-------VAPDGMESLGTC-SSEIGPVIMAAETTDGKA 179 (208)
T ss_pred EECCCCCCCcccCCCCcccccccccccCCceEEEEechhhhh-------cCCCCeEEEEEe-cCCCCCEEEEEEECCCCE
Confidence 44443345678877653211 111233579999999997 899999999996 432222578889888899
Q ss_pred EEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047 269 AGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG 311 (350)
Q Consensus 269 ~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~ 311 (350)
||+|||||+..++ .+..|+++|+++...
T Consensus 180 ~GvQfHPE~~~T~---------------~G~~il~nfl~~~~~ 207 (208)
T PRK05637 180 IGLQFHPESVLSP---------------TGPIILSRCVEQLLA 207 (208)
T ss_pred EEEEeCCccCcCC---------------CHHHHHHHHHHHHhc
Confidence 9999999987653 378999999988754
No 18
>PLN02335 anthranilate synthase
Probab=99.94 E-value=5.9e-26 Score=204.46 Aligned_cols=182 Identities=16% Similarity=0.241 Sum_probs=129.6
Q ss_pred hHHHHHHHHHcCCeEEEEecCC-CHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhh
Q psy14047 32 PASYVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLK 110 (350)
Q Consensus 32 ~~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (350)
....+++|+++|..+.+++.+. +.+.+.. ...|||||+||+.+.+ +
T Consensus 31 t~~i~~~L~~~g~~~~v~~~~~~~~~~~~~--~~~d~iVisgGPg~p~--d----------------------------- 77 (222)
T PLN02335 31 TYNLCQYMGELGCHFEVYRNDELTVEELKR--KNPRGVLISPGPGTPQ--D----------------------------- 77 (222)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCCHHHHHh--cCCCEEEEcCCCCChh--h-----------------------------
Confidence 3567899999999999999864 3333332 3678999999996542 1
Q ss_pred HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccC-ceeee
Q psy14047 111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCD-CFYEN 189 (350)
Q Consensus 111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~-~~~~~ 189 (350)
... ..+.+++. +.++||||||+|||+|+.++||++. ..... .++..
T Consensus 78 ----------------------~~~-------~~~~~~~~---~~~~PiLGIClG~QlLa~alGg~v~-~~~~~~~~G~~ 124 (222)
T PLN02335 78 ----------------------SGI-------SLQTVLEL---GPLVPLFGVCMGLQCIGEAFGGKIV-RSPFGVMHGKS 124 (222)
T ss_pred ----------------------ccc-------hHHHHHHh---CCCCCEEEecHHHHHHHHHhCCEEE-eCCCccccCce
Confidence 001 11222222 2349999999999999999999875 33322 34455
Q ss_pred eeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCcccccccc-ceEEEEeecCCCceEEEEEEcCCcc-
Q psy14047 190 LALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKE-WKVLSTNSNNRGLKFISSVEHKVYP- 267 (350)
Q Consensus 190 ~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~-~~vla~s~~~~~~e~v~ai~~~~~~- 267 (350)
.++..+.. ..+.||.+++..+ .++++|++++.+. .+|++ ++++|++ .++. +++++++++|
T Consensus 125 ~~v~~~~~-~~~~Lf~~l~~~~--------~v~~~H~~~v~~~-----~lp~~~~~v~a~~-~~~~---v~ai~~~~~~~ 186 (222)
T PLN02335 125 SPVHYDEK-GEEGLFSGLPNPF--------TAGRYHSLVIEKD-----TFPSDELEVTAWT-EDGL---IMAARHRKYKH 186 (222)
T ss_pred eeeEECCC-CCChhhhCCCCCC--------EEEechhheEecc-----cCCCCceEEEEEc-CCCC---EEEEEecCCCC
Confidence 56654332 3457888877543 6999999999754 46766 9999986 5554 9999999888
Q ss_pred EEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcC
Q psy14047 268 FAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGS 312 (350)
Q Consensus 268 i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~ 312 (350)
+||+|||||+..++ .+..+|++|++.|+..
T Consensus 187 i~GvQfHPE~~~~~---------------~g~~i~~nF~~~~~~~ 216 (222)
T PLN02335 187 IQGVQFHPESIITT---------------EGKTIVRNFIKIIEKK 216 (222)
T ss_pred EEEEEeCCCCCCCh---------------hHHHHHHHHHHHHHhh
Confidence 89999999987542 3789999999988544
No 19
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.94 E-value=5.1e-26 Score=200.57 Aligned_cols=177 Identities=18% Similarity=0.331 Sum_probs=124.6
Q ss_pred ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhh
Q psy14047 28 KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQS 107 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (350)
.+|... .+++|+++|..+..++.+... .. .++.+||||++||+. . |.
T Consensus 11 dsf~~~-i~~~l~~~g~~~~v~~~~~~~--~~-~l~~~d~iIi~gGp~-~-~~--------------------------- 57 (190)
T PRK06895 11 DSFTFN-LVDLIRKLGVPMQVVNVEDLD--LD-EVENFSHILISPGPD-V-PR--------------------------- 57 (190)
T ss_pred CchHHH-HHHHHHHcCCcEEEEECCccC--hh-HhccCCEEEECCCCC-C-hH---------------------------
Confidence 445445 789999999998888875321 22 256789999998884 2 10
Q ss_pred hhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCcee
Q psy14047 108 LLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFY 187 (350)
Q Consensus 108 ~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~ 187 (350)
.+.. +.+++++ .+++ +|+||||+|||+|+.++||+|. ......++
T Consensus 58 ---------------------------~~~~----~~~~i~~-~~~~--~PiLGIClG~Qlla~~~Gg~V~-~~~~~~~g 102 (190)
T PRK06895 58 ---------------------------AYPQ----LFAMLER-YHQH--KSILGVCLGHQTLCEFFGGELY-NLNNVRHG 102 (190)
T ss_pred ---------------------------HhhH----HHHHHHH-hcCC--CCEEEEcHHHHHHHHHhCCeEe-ecCCCccC
Confidence 1111 2344444 3444 9999999999999999999985 22222334
Q ss_pred eeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCcc
Q psy14047 188 ENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYP 267 (350)
Q Consensus 188 ~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~ 267 (350)
...++.. ..++++|++++..+ .++++|++++.+. .+|+++.++|.+ .++ ++++++++++|
T Consensus 103 ~~~~v~~---~~~~~l~~~~~~~~--------~v~~~Hs~~v~~~-----~lp~~l~~~a~~-~~~---~i~a~~~~~~p 162 (190)
T PRK06895 103 QQRPLKV---RSNSPLFDGLPEEF--------NIGLYHSWAVSEE-----NFPTPLEITAVC-DEN---VVMAMQHKTLP 162 (190)
T ss_pred ceEEEEE---CCCChhhhcCCCce--------EEEcchhheeccc-----ccCCCeEEEEEC-CCC---cEEEEEECCCC
Confidence 3334432 34577888877654 5999999999643 478889998885 333 59999999999
Q ss_pred EEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047 268 FAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS 307 (350)
Q Consensus 268 i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~ 307 (350)
+||+|||||+..++| +..++++|++
T Consensus 163 i~GvQFHPE~~~~~~---------------g~~il~nf~~ 187 (190)
T PRK06895 163 IYGVQFHPESYISEF---------------GEQILRNWLA 187 (190)
T ss_pred EEEEEeCCCcCCCcc---------------hHHHHHHHHh
Confidence 999999999977665 5678888875
No 20
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.94 E-value=7.3e-26 Score=199.98 Aligned_cols=178 Identities=19% Similarity=0.259 Sum_probs=127.8
Q ss_pred HHHHHHHHHcCCeEEEEecCC-CHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047 33 ASYVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI 111 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (350)
...+++|++.|..+..++.++ +.+.+.. ...||||++||+.++. +
T Consensus 13 ~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iIlsgGP~~p~--~------------------------------ 58 (195)
T PRK07649 13 FNLVQFLGELGQELVVKRNDEVTISDIEN--MKPDFLMISPGPCSPN--E------------------------------ 58 (195)
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCHHHHhh--CCCCEEEECCCCCChH--h------------------------------
Confidence 457899999999999999874 3344432 4689999999996542 1
Q ss_pred HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA 191 (350)
Q Consensus 112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~ 191 (350)
.... .+.++.+ +++ +||||||+|||+|+.++||++. ......++...+
T Consensus 59 ---------------------~~~~-------~~~i~~~-~~~--~PvLGIClG~Qlla~~lGg~V~-~~~~~~~G~~~~ 106 (195)
T PRK07649 59 ---------------------AGIS-------MEVIRYF-AGK--IPIFGVCLGHQSIAQVFGGEVV-RAERLMHGKTSL 106 (195)
T ss_pred ---------------------CCCc-------hHHHHHh-cCC--CCEEEEcHHHHHHHHHcCCEEe-eCCCcccCCeEE
Confidence 0001 1112222 233 9999999999999999999985 333333444333
Q ss_pred ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047 192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI 271 (350)
Q Consensus 192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv 271 (350)
+.. .++++|.+++..+ .++++|++.+... .+|++++++|++ +++. ++++++++.++||+
T Consensus 107 i~~----~~~~lf~~~~~~~--------~v~~~H~~~v~~~-----~lp~~~~~~a~s-~~~~---v~a~~~~~~~i~gv 165 (195)
T PRK07649 107 MHH----DGKTIFSDIPNPF--------TATRYHSLIVKKE-----TLPDCLEVTSWT-EEGE---IMAIRHKTLPIEGV 165 (195)
T ss_pred EEE----CCChhhcCCCCCC--------EEEEechheEecc-----cCCCCeEEEEEc-CCCc---EEEEEECCCCEEEE
Confidence 321 2456888877654 6999999998532 589999999996 5554 89999999899999
Q ss_pred cccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcC
Q psy14047 272 QFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGS 312 (350)
Q Consensus 272 QfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~ 312 (350)
|||||+..++ .+..++++|++.+..+
T Consensus 166 QFHPE~~~t~---------------~g~~il~nfl~~~~~~ 191 (195)
T PRK07649 166 QFHPESIMTS---------------HGKELLQNFIRKYSPS 191 (195)
T ss_pred EECCCCCCCc---------------cHHHHHHHHHHHhHhh
Confidence 9999977532 3789999999877554
No 21
>PRK00758 GMP synthase subunit A; Validated
Probab=99.94 E-value=4.2e-26 Score=200.11 Aligned_cols=170 Identities=21% Similarity=0.309 Sum_probs=123.2
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhccc-ceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQV-NGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI 111 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~-dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (350)
...+++++++|..+.++++..+.+++ +.. |||++|||+ ++. +
T Consensus 13 ~~i~~~l~~~g~~~~~~~~~~~~~~l----~~~~dgivi~Gg~-~~~--------------------------~------ 55 (184)
T PRK00758 13 HLIHRTLRYLGVDAKIIPNTTPVEEI----KAFEDGLILSGGP-DIE--------------------------R------ 55 (184)
T ss_pred HHHHHHHHHcCCcEEEEECCCCHHHH----hhcCCEEEECCCC-Chh--------------------------h------
Confidence 45678899999999999987765544 445 999999998 432 0
Q ss_pred HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA 191 (350)
Q Consensus 112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~ 191 (350)
.. .+.+++++ .+ +||||||+|||+|+.++||++. ....... ...+
T Consensus 56 ---------------------~~-------~~~~~l~~---~~--~PilGIC~G~Q~L~~a~Gg~v~-~~~~~~~-g~~~ 100 (184)
T PRK00758 56 ---------------------AG-------NCPEYLKE---LD--VPILGICLGHQLIAKAFGGEVG-RGEYGEY-ALVE 100 (184)
T ss_pred ---------------------cc-------ccHHHHHh---CC--CCEEEEeHHHHHHHHhcCcEEe-cCCCcee-eeEE
Confidence 00 02233332 23 9999999999999999999975 3322222 2334
Q ss_pred ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047 192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI 271 (350)
Q Consensus 192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv 271 (350)
+..+ ..+.+|.+++..+ .++++|++.+. .+|++++++|++ +++. +++++++++++||+
T Consensus 101 i~~~---~~~~l~~~~~~~~--------~~~~~H~~~v~-------~l~~~~~~la~~-~~~~---v~a~~~~~~~~~g~ 158 (184)
T PRK00758 101 VEIL---DEDDILKGLPPEI--------RVWASHADEVK-------ELPDGFEILARS-DICE---VEAMKHKEKPIYGV 158 (184)
T ss_pred EEEc---CCChhhhCCCCCc--------EEEeehhhhhh-------hCCCCCEEEEEC-CCCC---EEEEEECCCCEEEE
Confidence 4332 2455777766543 68999999986 799999999996 5554 88999988889999
Q ss_pred cccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047 272 QFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG 311 (350)
Q Consensus 272 QfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~ 311 (350)
|||||++..+ .+..|++.|++.|.+
T Consensus 159 QfHPE~~~~~---------------~g~~l~~~f~~~~~~ 183 (184)
T PRK00758 159 QFHPEVAHTE---------------YGEEIFKNFLEICGK 183 (184)
T ss_pred EcCCccCCCc---------------hHHHHHHHHHHHHcc
Confidence 9999987532 378999999987754
No 22
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.94 E-value=1e-25 Score=214.74 Aligned_cols=174 Identities=20% Similarity=0.348 Sum_probs=124.4
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047 32 PASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI 111 (350)
Q Consensus 32 ~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (350)
...++++|+++|+.++++|++.+.+++.+ ...|||+|+||+.|..
T Consensus 184 k~ni~~~L~~~G~~v~vvp~~~~~~~i~~--~~pDGIiLSgGPgdp~--------------------------------- 228 (358)
T TIGR01368 184 KQNILRRLVKRGCEVTVVPYDTDAEEIKK--YNPDGIFLSNGPGDPA--------------------------------- 228 (358)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCCHHHHHh--hCCCEEEECCCCCCHH---------------------------------
Confidence 45799999999999999999876555433 2459999999985421
Q ss_pred HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA 191 (350)
Q Consensus 112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~ 191 (350)
... ...+.++++.+ + +||||||+|||+|+.++||++. ....++++...|
T Consensus 229 -----------------------~~~----~~i~~i~~~~~-~--~PILGIClG~QlLa~a~Gg~v~-kl~~gh~G~nhp 277 (358)
T TIGR01368 229 -----------------------AVE----PAIETIRKLLE-K--IPIFGICLGHQLLALAFGAKTY-KMKFGHRGGNHP 277 (358)
T ss_pred -----------------------HHH----HHHHHHHHHHc-C--CCEEEECHHHHHHHHHhCCcee-ccCcCcCCCcee
Confidence 011 12334444443 3 9999999999999999999874 334455555555
Q ss_pred ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCcccccc-ccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047 192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLA-KEWKVLSTNSNNRGLKFISSVEHKVYPFAG 270 (350)
Q Consensus 192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~-~~~~vla~s~~~~~~e~v~ai~~~~~~i~g 270 (350)
+.... ...+ ..+.++|++++.++ .++ ++++++|++.+|+. |++++++++|+||
T Consensus 278 V~~~~---~~~v---------------~itsqnH~~aV~~~-----~l~~~~l~vta~~~nDg~---Vegi~h~~~pi~g 331 (358)
T TIGR01368 278 VKDLI---TGRV---------------EITSQNHGYAVDPD-----SLPAGDLEVTHVNLNDGT---VEGIRHKDLPVFS 331 (358)
T ss_pred eEECC---CCcE---------------EEeecCCCcEEccc-----ccCCCceEEEEEECCCCc---EEEEEECCCCEEE
Confidence 53211 1111 13567899999755 355 68999999734554 9999999999999
Q ss_pred EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047 271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG 311 (350)
Q Consensus 271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~ 311 (350)
+|||||+.+.+. +.++||+.|++.+++
T Consensus 332 VQfHPE~~~gp~--------------d~~~lF~~F~~~~~~ 358 (358)
T TIGR01368 332 VQYHPEASPGPH--------------DTEYLFDEFIDLIKK 358 (358)
T ss_pred EEECCCCCCCCC--------------ChHHHHHHHHHHhhC
Confidence 999999875422 367899999988753
No 23
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.94 E-value=9.5e-26 Score=215.36 Aligned_cols=174 Identities=21% Similarity=0.338 Sum_probs=126.8
Q ss_pred chhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhh
Q psy14047 30 YIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLL 109 (350)
Q Consensus 30 ~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
.+..+++++|+++|+.++++|++.+.+++.. ..+|||+|+||+.|..
T Consensus 186 G~k~nivr~L~~~G~~v~vvp~~~~~~~i~~--~~~DGIvLSgGPgdp~------------------------------- 232 (360)
T PRK12564 186 GVKRNILRELAERGCRVTVVPATTTAEEILA--LNPDGVFLSNGPGDPA------------------------------- 232 (360)
T ss_pred CcHHHHHHHHHHCCCEEEEEeCCCCHHHHHh--cCCCEEEEeCCCCChH-------------------------------
Confidence 3567899999999999999999877665543 2689999999985421
Q ss_pred hHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeee
Q psy14047 110 KIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYEN 189 (350)
Q Consensus 110 ~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~ 189 (350)
.+. ...+.++++.+++ +||||||+|||+|+.++||++. ....+.++..
T Consensus 233 -------------------------~~~----~~~~~i~~~~~~~--~PilGIClG~QlLa~a~Gg~v~-kl~~gh~G~~ 280 (360)
T PRK12564 233 -------------------------ALD----YAIEMIRELLEKK--IPIFGICLGHQLLALALGAKTY-KMKFGHRGAN 280 (360)
T ss_pred -------------------------HHH----HHHHHHHHHHHcC--CeEEEECHHHHHHHHHhCCcEe-ccCCCccCCc
Confidence 011 1334455555444 9999999999999999999975 3444555555
Q ss_pred eeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEE
Q psy14047 190 LALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFA 269 (350)
Q Consensus 190 ~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~ 269 (350)
.|+.... ... ...+.++|+++|.+. .||++++++|++.+|+. +++++++++|+|
T Consensus 281 ~pv~~~~---~~~---------------~~its~~H~~~V~~~-----~lp~~l~v~a~~~~Dg~---iegi~~~~~pi~ 334 (360)
T PRK12564 281 HPVKDLE---TGK---------------VEITSQNHGFAVDED-----SLPANLEVTHVNLNDGT---VEGLRHKDLPAF 334 (360)
T ss_pred eeeEECC---CCc---------------EEEEecCcccEEccc-----ccCCceEEEEEeCCCCc---EEEEEECCCCEE
Confidence 5553221 010 124678999999654 57889999999733444 999999999999
Q ss_pred EEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHH
Q psy14047 270 GIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQ 308 (350)
Q Consensus 270 gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~ 308 (350)
|+|||||..+.+. +++++|+.|++.
T Consensus 335 gVQfHPE~~~gp~--------------d~~~lF~~F~~~ 359 (360)
T PRK12564 335 SVQYHPEASPGPH--------------DSAYLFDEFVEL 359 (360)
T ss_pred EEEeCCcCCCCCC--------------CHHHHHHHHHHh
Confidence 9999999876432 367899999875
No 24
>CHL00101 trpG anthranilate synthase component 2
Probab=99.94 E-value=8.4e-26 Score=199.10 Aligned_cols=174 Identities=18% Similarity=0.245 Sum_probs=123.5
Q ss_pred HHHHHHHHHcCCeEEEEecCC-CHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047 33 ASYVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI 111 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (350)
...+++|++.|..+..++.+. +.+.+. ...+||||++||+.++.
T Consensus 13 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiiisgGpg~~~--------------------------------- 57 (190)
T CHL00101 13 YNLVQSLGELNSDVLVCRNDEIDLSKIK--NLNIRHIIISPGPGHPR--------------------------------- 57 (190)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCHHHHh--hCCCCEEEECCCCCChH---------------------------------
Confidence 457889999999999999874 333332 24689999999986432
Q ss_pred HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA 191 (350)
Q Consensus 112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~ 191 (350)
...... .++ +..+++ +||||||+|||+|+.++||+|. ......++....
T Consensus 58 ---------------------~~~~~~---~i~----~~~~~~--~PiLGIClG~Qlla~~~Gg~V~-~~~~~~~g~~~~ 106 (190)
T CHL00101 58 ---------------------DSGISL---DVI----SSYAPY--IPILGVCLGHQSIGYLFGGKII-KAPKPMHGKTSK 106 (190)
T ss_pred ---------------------HCcchH---HHH----HHhcCC--CcEEEEchhHHHHHHHhCCEEE-ECCCcccCceee
Confidence 011111 122 223344 9999999999999999999985 333333443332
Q ss_pred ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCcc-EEE
Q psy14047 192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYP-FAG 270 (350)
Q Consensus 192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~-i~g 270 (350)
+. ...+++|.+++..+ .++++|++.+... .||++++++|++ +++. +++++++++| +||
T Consensus 107 ~~----~~~~~l~~~~~~~~--------~v~~~H~~~v~~~-----~lp~~~~vla~s-~~~~---v~a~~~~~~~~i~g 165 (190)
T CHL00101 107 IY----HNHDDLFQGLPNPF--------TATRYHSLIIDPL-----NLPSPLEITAWT-EDGL---IMACRHKKYKMLRG 165 (190)
T ss_pred Ee----eCCcHhhccCCCce--------EEEcchhheeecc-----cCCCceEEEEEc-CCCc---EEEEEeCCCCCEEE
Confidence 21 12456777776543 6899999999532 589999999996 5555 8999999999 999
Q ss_pred EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHH
Q psy14047 271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQ 308 (350)
Q Consensus 271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~ 308 (350)
+|||||+..++ .+..|+++|++.
T Consensus 166 vQfHPE~~~~~---------------~g~~l~~nf~~~ 188 (190)
T CHL00101 166 IQFHPESLLTT---------------HGQQILRNFLSL 188 (190)
T ss_pred EEeCCccCCCh---------------hHHHHHHHHHhh
Confidence 99999986432 378899999874
No 25
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.94 E-value=1.1e-25 Score=198.63 Aligned_cols=177 Identities=16% Similarity=0.203 Sum_probs=121.5
Q ss_pred HHHHHHHHHcCCeEEEEecCC-CHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047 33 ASYVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI 111 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (350)
...++.|++.|+.+..++.+. +.+++++ ...||||++||+.+.. +
T Consensus 13 ~nl~~~l~~~~~~~~v~~~~~~~~~~~~~--~~~~~iilsgGP~~~~--~------------------------------ 58 (191)
T PRK06774 13 YNLYQYFCELGTEVMVKRNDELQLTDIEQ--LAPSHLVISPGPCTPN--E------------------------------ 58 (191)
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCeEEEcCCCCChH--h------------------------------
Confidence 456778888999999999874 4555543 2679999999997542 0
Q ss_pred HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA 191 (350)
Q Consensus 112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~ 191 (350)
..... .+++ . .+++ +||||||+|||+|+.++||++. ......++. ..
T Consensus 59 ---------------------~~~~~----~~i~---~-~~~~--~PiLGIC~G~Qlla~~~GG~v~-~~~~~~~G~-~~ 105 (191)
T PRK06774 59 ---------------------AGISL----AVIR---H-FADK--LPILGVCLGHQALGQAFGARVV-RARQVMHGK-TS 105 (191)
T ss_pred ---------------------CCCch----HHHH---H-hcCC--CCEEEECHHHHHHHHHhCCEEE-eCCcceecc-eE
Confidence 00000 1222 2 2333 9999999999999999999975 222222222 22
Q ss_pred ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047 192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI 271 (350)
Q Consensus 192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv 271 (350)
+.. ...+.+|++++.. ..++++|++++.+. .+|++++++|+|..++..+.++++++++.|+||+
T Consensus 106 ~~~---~~~~~lf~~l~~~--------~~v~~~Hs~~v~~~-----~lp~~~~vlA~s~~d~~~~~i~~~~~~~~~i~Gv 169 (191)
T PRK06774 106 AIC---HSGQGVFRGLNQP--------LTVTRYHSLVIAAD-----SLPGCFELTAWSERGGEMDEIMGIRHRTLPLEGV 169 (191)
T ss_pred EEE---ecCchhhcCCCCC--------cEEEEeCcceeecc-----CCCCCeEEEEEeCCCCCcceEEEEEeCCCCEEEE
Confidence 211 1235577776553 36999999999532 6899999999972233335688899988899999
Q ss_pred cccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047 272 QFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS 307 (350)
Q Consensus 272 QfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~ 307 (350)
|||||+..+. .+..||++|++
T Consensus 170 QfHPE~~~~~---------------~G~~i~~nf~~ 190 (191)
T PRK06774 170 QFHPESILSE---------------QGHQLLDNFLK 190 (191)
T ss_pred EECCCcCCCc---------------cHHHHHHHHhh
Confidence 9999986432 37889999975
No 26
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.93 E-value=4.2e-25 Score=194.90 Aligned_cols=167 Identities=25% Similarity=0.402 Sum_probs=120.7
Q ss_pred hhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhh
Q psy14047 31 IPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLK 110 (350)
Q Consensus 31 i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (350)
...+.++++++.|..+..+++..+.....+.++..|||+++||+.++.
T Consensus 9 ~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~-------------------------------- 56 (192)
T PF00117_consen 9 FTHSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPY-------------------------------- 56 (192)
T ss_dssp THHHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTT--------------------------------
T ss_pred HHHHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCccc--------------------------------
Confidence 357889999999999999998765444422478899999999986543
Q ss_pred HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCc-cCceeee
Q psy14047 111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTR-CDCFYEN 189 (350)
Q Consensus 111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~-~~~~~~~ 189 (350)
+ +. .+.++++++.+.+ +||||||+|||+|+.++||++. ... .+..+..
T Consensus 57 -----------------------d-~~----~~~~~i~~~~~~~--~PilGIC~G~Q~la~~~G~~v~-~~~~~~~~g~~ 105 (192)
T PF00117_consen 57 -----------------------D-IE----GLIELIREARERK--IPILGICLGHQILAHALGGKVV-PSPEKPHHGGN 105 (192)
T ss_dssp -----------------------S-HH----HHHHHHHHHHHTT--SEEEEETHHHHHHHHHTTHEEE-EEESEEEEEEE
T ss_pred -----------------------c-cc----ccccccccccccc--eEEEEEeehhhhhHHhcCCccc-ccccccccccc
Confidence 1 11 1333444444444 9999999999999999999975 222 3444444
Q ss_pred eeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCcccc---ccccceEEEEeecCCCceEEEEEEcCCc
Q psy14047 190 LALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNG---LAKEWKVLSTNSNNRGLKFISSVEHKVY 266 (350)
Q Consensus 190 ~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~---L~~~~~vla~s~~~~~~e~v~ai~~~~~ 266 (350)
.++.... .+++|.+.+..+ .++.+|++.+. . +|++++++|++ .++. .++++.+.+.
T Consensus 106 ~~~~~~~---~~~~~~~~~~~~--------~~~~~H~~~v~-------~~~~~p~~~~~la~s-~~~~--~~~~~~~~~~ 164 (192)
T PF00117_consen 106 IPISETP---EDPLFYGLPESF--------KAYQYHSDAVN-------PDDLLPEGFEVLASS-SDGC--PIQAIRHKDN 164 (192)
T ss_dssp EEEEEEE---EHGGGTTSTSEE--------EEEEEECEEEE-------EGHHHHTTEEEEEEE-TTTT--EEEEEEECTT
T ss_pred ccccccc---cccccccccccc--------ccccccceeee-------ccccccccccccccc-cccc--cccccccccc
Confidence 4443321 146777776644 68999999997 5 89999999997 4442 2778888887
Q ss_pred cEEEEcccCCcCCcc
Q psy14047 267 PFAGIQFHPEKNAYE 281 (350)
Q Consensus 267 ~i~gvQfHPE~~~~~ 281 (350)
|+||+|||||++...
T Consensus 165 ~i~g~QfHPE~~~~~ 179 (192)
T PF00117_consen 165 PIYGVQFHPEFSSSP 179 (192)
T ss_dssp SEEEESSBTTSTTST
T ss_pred EEEEEecCCcCCCCC
Confidence 899999999988653
No 27
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.93 E-value=8.4e-26 Score=198.98 Aligned_cols=176 Identities=19% Similarity=0.225 Sum_probs=131.9
Q ss_pred HHHHHHHHHcC-CeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047 33 ASYVKAVEASG-ARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI 111 (350)
Q Consensus 33 ~~yv~~l~~~G-~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (350)
..+.+++++.| ..-..++++.+.+.+.. ...+|||++||+++++.
T Consensus 15 ~li~r~~re~g~v~~e~~~~~~~~~~~~~--~~~~giIlsGgp~sv~~-------------------------------- 60 (198)
T COG0518 15 GLIARRLRELGYVYSEIVPYTGDAEELPL--DSPDGIIISGGPMSVYD-------------------------------- 60 (198)
T ss_pred HHHHHHHHHcCCceEEEEeCCCCcccccc--cCCCEEEEcCCCCCCcc--------------------------------
Confidence 45668999999 66677788877766542 45599999999977651
Q ss_pred HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA 191 (350)
Q Consensus 112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~ 191 (350)
.++|.. .+.+++++....+ +||||||+|||+|+.++||+|. .+.. .+.+..+
T Consensus 61 ---------------------~~~w~~---~~~~~i~~~~~p~--~pvLGIC~G~Ql~A~~lGg~V~-~~~~-~E~G~~~ 112 (198)
T COG0518 61 ---------------------EDPWLP---REKDLIKDAGVPG--KPVLGICLGHQLLAKALGGKVE-RGPK-REIGWTP 112 (198)
T ss_pred ---------------------ccccch---hHHHHHHHhCCCC--CCEEEEChhHHHHHHHhCCEEe-ccCC-CccceEE
Confidence 111221 2567777777555 7899999999999999999986 4433 4455677
Q ss_pred ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047 192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI 271 (350)
Q Consensus 192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv 271 (350)
++.++ ..+.+|++++.... .|+.+|.+.+. +||++++++|+| +.+. ++++++. .++||+
T Consensus 113 v~~~~--~~~~l~~gl~~~~~-------~v~~sH~D~v~-------~lP~g~~vlA~s-~~cp---~qa~~~~-~~~~gv 171 (198)
T COG0518 113 VELTE--GDDPLFAGLPDLFT-------TVFMSHGDTVV-------ELPEGAVVLASS-ETCP---NQAFRYG-KRAYGV 171 (198)
T ss_pred EEEec--CccccccCCccccC-------ccccchhCccc-------cCCCCCEEEecC-CCCh---hhheecC-CcEEEE
Confidence 76654 23378888776431 48999999997 899999999997 6665 7899988 689999
Q ss_pred cccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047 272 QFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS 307 (350)
Q Consensus 272 QfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~ 307 (350)
|||||.+. +.++.++++|+.
T Consensus 172 QFHpEv~~----------------~~~~~~l~nf~~ 191 (198)
T COG0518 172 QFHPEVTH----------------EYGEALLENFAH 191 (198)
T ss_pred eeeeEEeH----------------HHHHHHHHHhhh
Confidence 99999763 357788888873
No 28
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.93 E-value=3e-25 Score=191.12 Aligned_cols=158 Identities=24% Similarity=0.316 Sum_probs=116.3
Q ss_pred HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh--cCccccCCccCceeee
Q psy14047 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS--NNENELRTRCDCFYEN 189 (350)
Q Consensus 112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~--Gg~v~~~~~~~~~~~~ 189 (350)
++.+..+|+||+||.|++..+++.+.+.. +.+.+++..+.| +|+||||+|||+|.... ++...+++.++....+
T Consensus 34 ~~~i~~AD~liLPGVGaf~~am~~L~~~g--l~~~i~~~~~~~--kP~LGIClGMQlLfe~SeE~~~~~GLg~i~G~V~r 109 (204)
T COG0118 34 PEEILKADKLILPGVGAFGAAMANLRERG--LIEAIKEAVESG--KPFLGICLGMQLLFERSEEGGGVKGLGLIPGKVVR 109 (204)
T ss_pred HHHHhhCCEEEecCCCCHHHHHHHHHhcc--hHHHHHHHHhcC--CCEEEEeHhHHhhhhcccccCCCCCcceecceEEE
Confidence 45678999999999999999899888764 899999998888 99999999999999763 2222455655555433
Q ss_pred eece--eecCC--------CCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEE
Q psy14047 190 LALE--FMPSF--------RQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFIS 259 (350)
Q Consensus 190 ~~i~--~~~~~--------~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ 259 (350)
.+-. .+++. .+++||.++++ ...+|+.|+|.+.+ .+.-.++++ .+++.+|.+
T Consensus 110 ~~~~~~kvPHMGWN~l~~~~~~~l~~gi~~--------~~~~YFVHSY~~~~--------~~~~~v~~~--~~YG~~f~A 171 (204)
T COG0118 110 FPAEDLKVPHMGWNQVEFVRGHPLFKGIPD--------GAYFYFVHSYYVPP--------GNPETVVAT--TDYGEPFPA 171 (204)
T ss_pred cCCCCCCCCccccceeeccCCChhhcCCCC--------CCEEEEEEEEeecC--------CCCceEEEe--ccCCCeeEE
Confidence 2221 12222 34556666554 35799999999962 233456666 567767999
Q ss_pred EEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHH
Q psy14047 260 SVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQA 309 (350)
Q Consensus 260 ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~ 309 (350)
+|+.. +++|+|||||++. +.+..+.++|++.+
T Consensus 172 aV~k~--N~~g~QFHPEKSg----------------~~Gl~lL~NFl~~~ 203 (204)
T COG0118 172 AVAKD--NVFGTQFHPEKSG----------------KAGLKLLKNFLEWI 203 (204)
T ss_pred EEEeC--CEEEEecCcccch----------------HHHHHHHHHHHhhc
Confidence 99876 6999999999985 35788999998764
No 29
>PLN02347 GMP synthetase
Probab=99.93 E-value=1.1e-24 Score=217.96 Aligned_cols=189 Identities=15% Similarity=0.212 Sum_probs=133.4
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE 112 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (350)
...+++|++.|..+.++|++.+.+.+.. ..+||||||||+.+++..+
T Consensus 24 ~~I~r~lrelgv~~~v~p~~~~~~~i~~--~~~dgIILsGGP~sv~~~~------------------------------- 70 (536)
T PLN02347 24 HLITRRVRELGVYSLLLSGTASLDRIAS--LNPRVVILSGGPHSVHVEG------------------------------- 70 (536)
T ss_pred HHHHHHHHHCCCeEEEEECCCCHHHHhc--CCCCEEEECCCCCcccccC-------------------------------
Confidence 5667899999999999999877666643 2789999999986653100
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL 192 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i 192 (350)
...+.. .+++.+.+ .+ +||||||+|||+|+.++||+|. ..... +.+..++
T Consensus 71 --------------------~p~~~~---~i~~~~~~---~~--iPILGIClG~QlLa~alGG~V~-~~~~~-e~G~~~v 120 (536)
T PLN02347 71 --------------------APTVPE---GFFDYCRE---RG--VPVLGICYGMQLIVQKLGGEVK-PGEKQ-EYGRMEI 120 (536)
T ss_pred --------------------CchhhH---HHHHHHHh---cC--CcEEEECHHHHHHHHHcCCEEE-ecCCc-ccceEEE
Confidence 001111 24454443 23 9999999999999999999975 22222 2233444
Q ss_pred eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047 193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ 272 (350)
Q Consensus 193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ 272 (350)
.. ..+++||++++... ...++++|++.+. .+|++++++|++ +++. ++++++++.|+||+|
T Consensus 121 ~i---~~~~~Lf~~l~~~~------~~~v~~~Hsd~V~-------~lP~g~~vlA~s-~~~~---iaai~~~~~~i~GvQ 180 (536)
T PLN02347 121 RV---VCGSQLFGDLPSGE------TQTVWMSHGDEAV-------KLPEGFEVVAKS-VQGA---VVAIENRERRIYGLQ 180 (536)
T ss_pred EE---cCCChhhhcCCCCc------eEEEEEEEEEEee-------eCCCCCEEEEEe-CCCc---EEEEEECCCCEEEEE
Confidence 33 23567888876531 1368999999997 899999999997 5554 799999888999999
Q ss_pred ccCCcCCccccccCCCCCchHHHHhHHHHHHHHH-HHHHcC-CCCCCCH
Q psy14047 273 FHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLV-SQASGS-HHSFETE 319 (350)
Q Consensus 273 fHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv-~~~~~~-~~~~~~~ 319 (350)
||||++.++ .+..++++|+ +.|+.+ ..+.++.
T Consensus 181 FHPE~~~t~---------------~G~~iL~NFl~~ic~~~~~~~~~~~ 214 (536)
T PLN02347 181 YHPEVTHSP---------------KGMETLRHFLFDVCGVTADWKMQDV 214 (536)
T ss_pred ccCCCCccc---------------hHHHHHHHHHHHHhCcCCCcCcchH
Confidence 999987542 3677787776 677665 3444443
No 30
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.92 E-value=2.3e-24 Score=205.20 Aligned_cols=175 Identities=21% Similarity=0.333 Sum_probs=125.0
Q ss_pred hhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhh
Q psy14047 31 IPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLK 110 (350)
Q Consensus 31 i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (350)
+...++++|+++|+.++++|++.+.+.+.+ .++|||+|+||+.|.. +
T Consensus 177 ~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~--~~~DGIiLsgGPgdp~--~----------------------------- 223 (354)
T PRK12838 177 YKKSILRSLSKRGCKVTVLPYDTSLEEIKN--LNPDGIVLSNGPGDPK--E----------------------------- 223 (354)
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCHHHHhh--cCCCEEEEcCCCCChH--H-----------------------------
Confidence 567899999999999999999877655543 3789999999986431 0
Q ss_pred HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeee
Q psy14047 111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENL 190 (350)
Q Consensus 111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~ 190 (350)
... ..+.++++.+ . +||||||+|||+|+.++||++. ....+.++...
T Consensus 224 ----------------------~~~-------~~~~i~~~~~-~--~PvlGIClG~QlLa~a~Gg~v~-kl~~gh~G~~h 270 (354)
T PRK12838 224 ----------------------LQP-------YLPEIKKLIS-S--YPILGICLGHQLIALALGADTE-KLPFGHRGANH 270 (354)
T ss_pred ----------------------hHH-------HHHHHHHHhc-C--CCEEEECHHHHHHHHHhCCEEe-cCCCCccCCce
Confidence 011 2233444442 2 9999999999999999999975 33444555555
Q ss_pred eceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccc-cceEEEEeecCCCceEEEEEEcCCccEE
Q psy14047 191 ALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAK-EWKVLSTNSNNRGLKFISSVEHKVYPFA 269 (350)
Q Consensus 191 ~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~-~~~vla~s~~~~~~e~v~ai~~~~~~i~ 269 (350)
|+.... .+.++ .+.++|++++... .++. ++++++.+..|+ .|+++++++.|+|
T Consensus 271 pV~~~~---~~~~~---------------~ts~~H~~aV~~~-----sl~~~~l~v~a~~~~Dg---~Veai~~~~~pi~ 324 (354)
T PRK12838 271 PVIDLT---TGRVW---------------MTSQNHGYVVDED-----SLDGTPLSVRFFNVNDG---SIEGLRHKKKPVL 324 (354)
T ss_pred EEEECC---CCeEE---------------EeccchheEeccc-----ccCCCCcEEEEEECCCC---eEEEEEECCCCEE
Confidence 554321 11121 3567899999743 3554 589999863344 4999999999999
Q ss_pred EEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047 270 GIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG 311 (350)
Q Consensus 270 gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~ 311 (350)
|+|||||..+.+ | ++++||+.|++.+++
T Consensus 325 gVQfHPE~~~gp--------~------d~~~lF~~F~~~~~~ 352 (354)
T PRK12838 325 SVQFHPEAHPGP--------H------DAEYIFDEFLEMMEK 352 (354)
T ss_pred EEEeCCCCCCCC--------c------cHHHHHHHHHHHHHh
Confidence 999999987532 1 377999999999864
No 31
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.92 E-value=3e-24 Score=205.74 Aligned_cols=175 Identities=21% Similarity=0.338 Sum_probs=123.2
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047 32 PASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI 111 (350)
Q Consensus 32 ~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (350)
....+++|+++|+.++++|++.+.+++.. .++|||+|+||+.|.. .
T Consensus 203 k~ni~~~L~~~G~~v~vvp~~~~~~~i~~--~~~dgIilSgGPg~p~--~------------------------------ 248 (382)
T CHL00197 203 KYNILRRLKSFGCSITVVPATSPYQDILS--YQPDGILLSNGPGDPS--A------------------------------ 248 (382)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCCHHHHhc--cCCCEEEEcCCCCChh--H------------------------------
Confidence 45689999999999999999887666643 3789999999985421 0
Q ss_pred HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA 191 (350)
Q Consensus 112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~ 191 (350)
... +.+.++++.+.+ +||||||+|||+|+.++||++. ....+..+...|
T Consensus 249 ---------------------~~~-------~i~~i~~~~~~~--~PilGIClGhQlLa~a~Gg~v~-k~~~Gh~g~n~p 297 (382)
T CHL00197 249 ---------------------IHY-------GIKTVKKLLKYN--IPIFGICMGHQILSLALEAKTF-KLKFGHRGLNHP 297 (382)
T ss_pred ---------------------HHH-------HHHHHHHHHhCC--CCEEEEcHHHHHHHHHhCCEEe-ccCCCCCCCCEe
Confidence 111 223333333333 9999999999999999999874 334444443333
Q ss_pred ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccc-cceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047 192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAK-EWKVLSTNSNNRGLKFISSVEHKVYPFAG 270 (350)
Q Consensus 192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~-~~~vla~s~~~~~~e~v~ai~~~~~~i~g 270 (350)
+.. +..+ ..+.++|++++.++ .++. ++++++.+.+|+. +++++++++|+||
T Consensus 298 v~~-------------~~~v-------~itsq~H~~~v~~~-----sv~~~~~~vt~~~~nDgt---vegi~h~~~pi~g 349 (382)
T CHL00197 298 SGL-------------NQQV-------EITSQNHGFAVNLE-----SLAKNKFYITHFNLNDGT---VAGISHSPKPYFS 349 (382)
T ss_pred cCC-------------CCce-------EEeecchheEeecc-----ccCCCCcEEEEEECCCCC---EEEEEECCCCcEE
Confidence 321 1110 13567899998755 4554 6889888634554 8999999999999
Q ss_pred EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCC
Q psy14047 271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSH 313 (350)
Q Consensus 271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~ 313 (350)
+|||||+.+.+ | +.+++|++|++.|+++.
T Consensus 350 VQFHPE~~~gp--------~------d~~~lf~~Fv~~~~~~~ 378 (382)
T CHL00197 350 VQYHPEASPGP--------H------DADYLFEYFIEIIKHSK 378 (382)
T ss_pred EeeCCCCCCCC--------C------CHHHHHHHHHHHHHhhh
Confidence 99999987643 2 25689999999998753
No 32
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.92 E-value=5.7e-24 Score=213.06 Aligned_cols=175 Identities=23% Similarity=0.318 Sum_probs=127.3
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE 112 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (350)
..++++|+++|..+.++|++.+.+.+..+ ++||||||||+.++.-..
T Consensus 17 ~li~r~lrelg~~~~v~p~~~~~~~l~~~--~~dgIIlsGGp~sv~~~~------------------------------- 63 (511)
T PRK00074 17 QLIARRVRELGVYSEIVPYDISAEEIRAF--NPKGIILSGGPASVYEEG------------------------------- 63 (511)
T ss_pred HHHHHHHHHCCCeEEEEECCCCHHHHhcc--CCCEEEECCCCcccccCC-------------------------------
Confidence 67789999999999999998776666442 569999999996553000
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL 192 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i 192 (350)
... +.+.+.+ .+ +||||||+|||+|+.++||++. ..... +.+..++
T Consensus 64 --------------------~p~-------~~~~i~~---~~--~PvLGIC~G~QlLa~~lGG~V~-~~~~~-e~G~~~i 109 (511)
T PRK00074 64 --------------------APR-------ADPEIFE---LG--VPVLGICYGMQLMAHQLGGKVE-RAGKR-EYGRAEL 109 (511)
T ss_pred --------------------Ccc-------ccHHHHh---CC--CCEEEECHHHHHHHHHhCCeEE-ecCCc-ccceEEE
Confidence 000 1111222 33 9999999999999999999974 23222 2233444
Q ss_pred eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047 193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ 272 (350)
Q Consensus 193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ 272 (350)
+.+ .++++|++++.. ..++++|++.+. .+|++++++|++ +++. ++++++.+.++||+|
T Consensus 110 ~i~---~~~~Lf~~l~~~--------~~v~~~H~d~V~-------~lp~g~~vlA~s-~~~~---v~ai~~~~~~i~GvQ 167 (511)
T PRK00074 110 EVD---NDSPLFKGLPEE--------QDVWMSHGDKVT-------ELPEGFKVIAST-ENCP---IAAIANEERKFYGVQ 167 (511)
T ss_pred EEc---CCChhhhcCCCc--------eEEEEECCeEEE-------ecCCCcEEEEEe-CCCC---EEEEEeCCCCEEEEe
Confidence 432 246788777654 368999999997 899999999997 5554 899998888999999
Q ss_pred ccCCcCCccccccCCCCCchHHHHhHHHHHHHHH-HHHHc
Q psy14047 273 FHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLV-SQASG 311 (350)
Q Consensus 273 fHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv-~~~~~ 311 (350)
||||++.+ ..+..|+++|+ +.|..
T Consensus 168 FHPE~~~t---------------~~G~~il~nFl~~i~~~ 192 (511)
T PRK00074 168 FHPEVTHT---------------PQGKKLLENFVFDICGC 192 (511)
T ss_pred CCCCcCCc---------------hhHHHHHHHHHHHhcCC
Confidence 99998753 24788999999 56643
No 33
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.92 E-value=1.8e-24 Score=196.83 Aligned_cols=139 Identities=22% Similarity=0.281 Sum_probs=108.4
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeecee
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEF 194 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~ 194 (350)
++++||||++||.....+...|.. .+.++++++.+.+ +||||||+|||+|+.++||++. ....+.+.+..++..
T Consensus 52 ~~~~dgvvi~Gg~~~~~d~~~w~~---~~~~~i~~~~~~~--~PvlGIC~G~Qlla~alGg~V~-~~~~g~e~G~~~v~~ 125 (237)
T PRK09065 52 PDDFAGVIITGSWAMVTDRLDWSE---RTADWLRQAAAAG--MPLLGICYGHQLLAHALGGEVG-YNPAGRESGTVTVEL 125 (237)
T ss_pred hhhcCEEEEeCCCcccCCCchhHH---HHHHHHHHHHHCC--CCEEEEChhHHHHHHHcCCccc-cCCCCCccceEEEEE
Confidence 456899999998887665555543 3667777777766 9999999999999999999975 443334445566666
Q ss_pred ecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEccc
Q psy14047 195 MPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFH 274 (350)
Q Consensus 195 ~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfH 274 (350)
+.....+++|++++..+ .++.+|++.+. .||++++++|++ +++. ++++++++ ++||+|||
T Consensus 126 ~~~~~~~~l~~~~~~~~--------~v~~~H~d~v~-------~lp~~~~~la~s-~~~~---iqa~~~~~-~i~gvQfH 185 (237)
T PRK09065 126 HPAAADDPLFAGLPAQF--------PAHLTHLQSVL-------RLPPGAVVLARS-AQDP---HQAFRYGP-HAWGVQFH 185 (237)
T ss_pred ccccccChhhhcCCccC--------cEeeehhhhhh-------hCCCCCEEEEcC-CCCC---eeEEEeCC-CEEEEEeC
Confidence 65555667888877654 58999999987 799999999997 5555 88999876 69999999
Q ss_pred CCcCC
Q psy14047 275 PEKNA 279 (350)
Q Consensus 275 PE~~~ 279 (350)
||++.
T Consensus 186 PE~~~ 190 (237)
T PRK09065 186 PEFTA 190 (237)
T ss_pred CcCCH
Confidence 99874
No 34
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.92 E-value=3.6e-24 Score=195.28 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=86.4
Q ss_pred HHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEE
Q psy14047 143 IYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITH 222 (350)
Q Consensus 143 l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~ 222 (350)
+.+++....+++ +||||||+|||+|+.++||+|. . ..+.+.+..+++++.....+++|..++..+ .++
T Consensus 82 i~~~i~~~~~~~--~PvLGIC~G~Qlla~a~GG~V~-~-~~g~e~G~~~v~l~~~g~~~~l~~~~~~~~--------~~~ 149 (242)
T PRK07567 82 LSGLLDEVVARD--FPFLGACYGVGTLGHHQGGVVD-R-TYGEPVGAVTVSLTDAGRADPLLAGLPDTF--------TAF 149 (242)
T ss_pred HHHHHHHHHhcC--CCEEEEchhHHHHHHHcCCEEe-c-CCCCcCccEEEEECCccCCChhhcCCCCce--------EEE
Confidence 334455555566 9999999999999999999985 3 223333455666655555667888776654 589
Q ss_pred EeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCc
Q psy14047 223 NWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAY 280 (350)
Q Consensus 223 ~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~ 280 (350)
++|++.|. .||++++++|+| +++. ++++++++ ++||+|||||.+..
T Consensus 150 ~~H~d~V~-------~lp~~~~vlA~s-~~~~---vqa~~~~~-~~~gvQfHPE~~~~ 195 (242)
T PRK07567 150 VGHKEAVS-------ALPPGAVLLATS-PTCP---VQMFRVGE-NVYATQFHPELDAD 195 (242)
T ss_pred eehhhhhh-------hCCCCCEEEEeC-CCCC---EEEEEeCC-CEEEEEeCCcCCHH
Confidence 99999997 799999999997 5555 88999865 79999999998753
No 35
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.91 E-value=7.3e-24 Score=196.09 Aligned_cols=179 Identities=21% Similarity=0.334 Sum_probs=137.6
Q ss_pred chhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhh
Q psy14047 30 YIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLL 109 (350)
Q Consensus 30 ~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
=+....++.|.+.|+++.++|+..+.+++.+ ...|||+|+.||.|- .
T Consensus 188 GvK~nIlr~L~~rg~~vtVVP~~t~~eeIl~--~~pDGiflSNGPGDP--~----------------------------- 234 (368)
T COG0505 188 GVKRNILRELVKRGCRVTVVPADTSAEEILA--LNPDGIFLSNGPGDP--A----------------------------- 234 (368)
T ss_pred CccHHHHHHHHHCCCeEEEEcCCCCHHHHHh--hCCCEEEEeCCCCCh--h-----------------------------
Confidence 3556888999999999999999988877654 478999999998651 1
Q ss_pred hHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeee
Q psy14047 110 KIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYEN 189 (350)
Q Consensus 110 ~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~ 189 (350)
... ..++.+++..... +|+||||+|||||+.|+|++.. ..+.++++.+
T Consensus 235 -------------------------~~~----~~i~~ik~l~~~~--iPifGICLGHQllalA~Ga~T~-KmkFGHrG~N 282 (368)
T COG0505 235 -------------------------PLD----YAIETIKELLGTK--IPIFGICLGHQLLALALGAKTY-KMKFGHRGAN 282 (368)
T ss_pred -------------------------HHH----HHHHHHHHHhccC--CCeEEEcHHHHHHHHhcCCcee-ecccCCCCCC
Confidence 111 1445666666543 6999999999999999999964 6778888888
Q ss_pred eeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEE
Q psy14047 190 LALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFA 269 (350)
Q Consensus 190 ~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~ 269 (350)
.|+.-. ...++ ..+.++|.++|++++ +++..+++..+..|+. ++++++++.|+|
T Consensus 283 hPV~dl---~tgrv---------------~ITSQNHGyaVd~~s-----~~~~~~vth~nlnDgT---vEGi~h~~~P~f 336 (368)
T COG0505 283 HPVKDL---DTGRV---------------YITSQNHGYAVDEDS-----LVETLKVTHVNLNDGT---VEGIRHKDLPAF 336 (368)
T ss_pred cCcccc---cCCeE---------------EEEecCCceecChhh-----cCCCceeEEEeCCCCC---ccceecCCCceE
Confidence 887421 11222 257889999998763 4444388888866776 889999999999
Q ss_pred EEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCC
Q psy14047 270 GIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSH 313 (350)
Q Consensus 270 gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~ 313 (350)
+||||||-++..+ ++.+||+.|++.++...
T Consensus 337 SVQ~HPEAsPGPh--------------Dt~ylFd~Fi~~~~~~~ 366 (368)
T COG0505 337 SVQYHPEASPGPH--------------DTRYLFDEFIELMEAAK 366 (368)
T ss_pred EEccCCCCCCCCc--------------ccHHHHHHHHHHHHHhh
Confidence 9999999998654 47899999999987654
No 36
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.91 E-value=1.4e-23 Score=184.63 Aligned_cols=185 Identities=20% Similarity=0.244 Sum_probs=121.4
Q ss_pred CEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCccccc
Q psy14047 7 PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKA 86 (350)
Q Consensus 7 p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~ 86 (350)
+.|+|+..... ..+++++|+++|+.++.++.. + -++.+|||++|||+.++.
T Consensus 2 m~~~i~~~~g~--------------~~~~~~~l~~~g~~~~~~~~~---~----~l~~~dgiii~GG~~~~~-------- 52 (189)
T PRK13525 2 MKIGVLALQGA--------------VREHLAALEALGAEAVEVRRP---E----DLDEIDGLILPGGESTTM-------- 52 (189)
T ss_pred CEEEEEEcccC--------------HHHHHHHHHHCCCEEEEeCCh---h----HhccCCEEEECCCChHHH--------
Confidence 47888887653 156678899999999998742 1 257899999999874321
Q ss_pred ceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHH
Q psy14047 87 GAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGF 166 (350)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~ 166 (350)
+..... ..+.++++++.++| +||+|||+|+
T Consensus 53 -----------------------------------------------~~~~~~-~~~~~~i~~~~~~g--~PilGIC~G~ 82 (189)
T PRK13525 53 -----------------------------------------------GKLLRD-FGLLEPLREFIASG--LPVFGTCAGM 82 (189)
T ss_pred -----------------------------------------------HHHHHh-ccHHHHHHHHHHCC--CeEEEECHHH
Confidence 011000 02456677777777 9999999999
Q ss_pred HHHHHHhcCc-cccCCccCceeeeeecee-ecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccce
Q psy14047 167 QLLLYTSNNE-NELRTRCDCFYENLALEF-MPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWK 244 (350)
Q Consensus 167 QlLa~a~Gg~-v~~~~~~~~~~~~~~i~~-~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~ 244 (350)
|+|+.++||. +..++..+......+... +.....+.++.+.++ ...++++|++.+. .+|++++
T Consensus 83 QlL~~~~gg~~~~~lg~~~~~v~~~~~g~~~g~~~~~~~~~~~~~--------~~~~~~~H~d~v~-------~lp~~~~ 147 (189)
T PRK13525 83 ILLAKEIEGYEQEHLGLLDITVRRNAFGRQVDSFEAELDIKGLGE--------PFPAVFIRAPYIE-------EVGPGVE 147 (189)
T ss_pred HHHHhhcccCCCCceeeEEEEEEEccCCCceeeEEecccccCCCC--------CeEEEEEeCceee-------ccCCCcE
Confidence 9999999884 222222221111111000 000011233444332 2468999999997 8999999
Q ss_pred EEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHH
Q psy14047 245 VLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQAS 310 (350)
Q Consensus 245 vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~ 310 (350)
++|++ + .. +++++.. ++||+|||||++. ..+||++|++.|.
T Consensus 148 vlA~~-~-~~---~~~~~~~--~~~g~QfHPE~~~------------------~~~~~~~f~~~~~ 188 (189)
T PRK13525 148 VLATV-G-GR---IVAVRQG--NILATSFHPELTD------------------DTRVHRYFLEMVK 188 (189)
T ss_pred EEEEc-C-CE---EEEEEeC--CEEEEEeCCccCC------------------CchHHHHHHHHhh
Confidence 99995 3 33 4566643 7999999999763 2589999999986
No 37
>PRK13566 anthranilate synthase; Provisional
Probab=99.91 E-value=1.8e-23 Score=215.52 Aligned_cols=181 Identities=20% Similarity=0.256 Sum_probs=132.8
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047 32 PASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI 111 (350)
Q Consensus 32 ~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (350)
.....++|++.|+.+.++++..+.+.+.. .++||||++||+.+.. ++
T Consensus 539 ~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~--~~~DgVVLsgGpgsp~--d~----------------------------- 585 (720)
T PRK13566 539 VHTLANYFRQTGAEVTTVRYGFAEEMLDR--VNPDLVVLSPGPGRPS--DF----------------------------- 585 (720)
T ss_pred HHHHHHHHHHCCCEEEEEECCCChhHhhh--cCCCEEEECCCCCChh--hC-----------------------------
Confidence 56888999999999999999877655542 5789999988885421 00
Q ss_pred HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA 191 (350)
Q Consensus 112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~ 191 (350)
. +.++++.+.+++ +||||||+|||+|+.++||++. ....+.++...+
T Consensus 586 -----------------------~-------~~~lI~~a~~~~--iPILGIClG~QlLa~alGG~V~-~~~~~~~G~~~~ 632 (720)
T PRK13566 586 -----------------------D-------CKATIDAALARN--LPIFGVCLGLQAIVEAFGGELG-QLAYPMHGKPSR 632 (720)
T ss_pred -----------------------C-------cHHHHHHHHHCC--CcEEEEehhHHHHHHHcCCEEE-ECCCCccCCceE
Confidence 0 123333434444 9999999999999999999975 333344554445
Q ss_pred ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047 192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI 271 (350)
Q Consensus 192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv 271 (350)
+... ..+.||++++..+ .++++|++.+... .+|++++++|++ .++ .|+++++++.|+||+
T Consensus 633 V~v~---~~~~Lf~~lp~~~--------~v~~~Hs~~v~~~-----~Lp~~~~vlA~s-~dg---~V~ai~~~~~pi~GV 692 (720)
T PRK13566 633 IRVR---GPGRLFSGLPEEF--------TVGRYHSLFADPE-----TLPDELLVTAET-EDG---VIMAIEHKTLPVAAV 692 (720)
T ss_pred EEEC---CCCchhhcCCCCC--------EEEEecceeEeec-----cCCCceEEEEEe-CCC---cEEEEEECCCCEEEE
Confidence 5432 2457888877654 6999999988632 589999999997 555 499999998899999
Q ss_pred cccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHH
Q psy14047 272 QFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQAS 310 (350)
Q Consensus 272 QfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~ 310 (350)
|||||+..+.-. ..+..|+++|++.|.
T Consensus 693 QFHPE~i~t~~~------------~~G~~ii~nfl~~~~ 719 (720)
T PRK13566 693 QFHPESIMTLGG------------DVGLRIIENVVRLLA 719 (720)
T ss_pred eccCeeCCcCCc------------hhHHHHHHHHHHHhh
Confidence 999998643111 248899999999885
No 38
>PRK05665 amidotransferase; Provisional
Probab=99.91 E-value=7.7e-24 Score=192.56 Aligned_cols=137 Identities=17% Similarity=0.149 Sum_probs=106.2
Q ss_pred HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeece
Q psy14047 114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALE 193 (350)
Q Consensus 114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~ 193 (350)
.++++||||++||....++..+|.. .+.++++++.+++ +|+||||+|||+|+.++||+|. ....+.+.+..++.
T Consensus 54 ~~~~~dgiiitGs~~~v~~~~pwi~---~l~~~i~~~~~~~--~PilGIC~GhQlla~AlGG~V~-~~~~G~e~G~~~~~ 127 (240)
T PRK05665 54 DDEKFDAYLVTGSKADSFGTDPWIQ---TLKTYLLKLYERG--DKLLGVCFGHQLLALLLGGKAE-RASQGWGVGIHRYQ 127 (240)
T ss_pred CcccCCEEEECCCCCCccccchHHH---HHHHHHHHHHhcC--CCEEEEeHHHHHHHHHhCCEEE-eCCCCcccceEEEE
Confidence 3567999999999888876667754 4778888888777 9999999999999999999985 44433333334444
Q ss_pred eecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcc
Q psy14047 194 FMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQF 273 (350)
Q Consensus 194 ~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQf 273 (350)
.+ ....++...+..+ .++.+|++.|. .||++++++|+| +.+. +++++..+ ++||+||
T Consensus 128 ~~---~~~~~~~~~~~~~--------~~~~~H~D~V~-------~LP~ga~~La~s-~~~~---~q~~~~~~-~~~g~Qf 184 (240)
T PRK05665 128 LA---AHAPWMSPAVTEL--------TLLISHQDQVT-------ALPEGATVIASS-DFCP---FAAYHIGD-QVLCFQG 184 (240)
T ss_pred ec---CCCccccCCCCce--------EEEEEcCCeee-------eCCCCcEEEEeC-CCCc---EEEEEeCC-CEEEEec
Confidence 32 2344666665543 68999999997 899999999997 6666 88888765 7999999
Q ss_pred cCCcCC
Q psy14047 274 HPEKNA 279 (350)
Q Consensus 274 HPE~~~ 279 (350)
|||.+.
T Consensus 185 HPE~~~ 190 (240)
T PRK05665 185 HPEFVH 190 (240)
T ss_pred CCcCcH
Confidence 999774
No 39
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.91 E-value=1.3e-23 Score=184.94 Aligned_cols=165 Identities=20% Similarity=0.281 Sum_probs=118.5
Q ss_pred hHHHHHHHHHcC---CeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhh
Q psy14047 32 PASYVKAVEASG---ARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSL 108 (350)
Q Consensus 32 ~~~yv~~l~~~G---~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (350)
...|.++++++| .++..++...... ...++.+|||++|||+.+.+ +
T Consensus 13 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~~~~~~dgvil~Gg~~~~~---~-------------------------- 61 (188)
T cd01741 13 PGLFEDLLREAGAETIEIDVVDVYAGEL--LPDLDDYDGLVILGGPMSVD---E-------------------------- 61 (188)
T ss_pred cchHHHHHHhcCCCCceEEEEecCCCCC--CCCcccCCEEEECCCCccCC---c--------------------------
Confidence 578899999999 4666666655432 12267888888888875431 0
Q ss_pred hhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceee
Q psy14047 109 LKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYE 188 (350)
Q Consensus 109 ~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~ 188 (350)
+...|.. .+.++++.+.+++ +|+||||+|||+|+.++||++. ......+..
T Consensus 62 -----------------------~~~~~~~---~~~~~i~~~~~~~--~pilgiC~G~q~l~~~lGG~v~-~~~~~~~~g 112 (188)
T cd01741 62 -----------------------DDYPWLK---KLKELIRQALAAG--KPVLGICLGHQLLARALGGKVG-RNPKGWEIG 112 (188)
T ss_pred -----------------------cCChHHH---HHHHHHHHHHHCC--CCEEEECccHHHHHHHhCCEEe-cCCCcceeE
Confidence 0122222 2556666666666 9999999999999999999975 444333555
Q ss_pred eeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccE
Q psy14047 189 NLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPF 268 (350)
Q Consensus 189 ~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i 268 (350)
..++.++.....+.++++.+..+ .++++|++.+. .+|++++++|++ +++. +++++.+ .++
T Consensus 113 ~~~v~~~~~~~~~~l~~~~~~~~--------~v~~~H~~~v~-------~lp~~~~~la~~-~~~~---v~~~~~~-~~~ 172 (188)
T cd01741 113 WFPVTLTEAGKADPLFAGLPDEF--------PVFHWHGDTVV-------ELPPGAVLLASS-EACP---NQAFRYG-DRA 172 (188)
T ss_pred EEEEEeccccccCchhhcCCCcc--------eEEEEeccChh-------hCCCCCEEeecC-CCCC---cceEEec-CCE
Confidence 66666655444556776665543 69999999997 799999999997 5555 7888886 589
Q ss_pred EEEcccCC
Q psy14047 269 AGIQFHPE 276 (350)
Q Consensus 269 ~gvQfHPE 276 (350)
||+|||||
T Consensus 173 ~g~QfHPE 180 (188)
T cd01741 173 LGLQFHPE 180 (188)
T ss_pred EEEccCch
Confidence 99999999
No 40
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.90 E-value=4.9e-23 Score=211.91 Aligned_cols=183 Identities=17% Similarity=0.229 Sum_probs=130.2
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047 32 PASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI 111 (350)
Q Consensus 32 ~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (350)
...+.++|++.|+.+..+++....+.+. ....||||++||+.+.. +
T Consensus 529 ~~~l~~~L~~~G~~v~vv~~~~~~~~~~--~~~~DgLILsgGPGsp~--d------------------------------ 574 (717)
T TIGR01815 529 VHTLANYLRQTGASVTTLRHSHAEAAFD--ERRPDLVVLSPGPGRPA--D------------------------------ 574 (717)
T ss_pred HHHHHHHHHHCCCeEEEEECCCChhhhh--hcCCCEEEEcCCCCCch--h------------------------------
Confidence 4678899999999998888765433322 24678888888875431 0
Q ss_pred HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA 191 (350)
Q Consensus 112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~ 191 (350)
.. +.+++++..+.+ +||||||+|||+|+.++||++. ....+.++...+
T Consensus 575 ----------------------~~-------~~~~I~~~~~~~--iPvLGICLG~QlLa~a~GG~V~-~~~~p~~G~~~~ 622 (717)
T TIGR01815 575 ----------------------FD-------VAGTIDAALARG--LPVFGVCLGLQGMVEAFGGALD-VLPEPVHGKASR 622 (717)
T ss_pred ----------------------cc-------cHHHHHHHHHCC--CCEEEECHHHHHHhhhhCCEEE-ECCCCeeCcceE
Confidence 00 122334444444 9999999999999999999975 344455554444
Q ss_pred ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047 192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI 271 (350)
Q Consensus 192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv 271 (350)
+..+ ..+.+|.+++..+ .++++|++.+... .||++++++|++ +++. +++|++++.|+||+
T Consensus 623 V~~~---~~~~Lf~~lp~~~--------~v~~~HS~~~~~~-----~LP~~~~vlA~s-~d~~---v~Ai~~~~~~i~GV 682 (717)
T TIGR01815 623 IRVL---GPDALFAGLPERL--------TVGRYHSLFARRD-----RLPAELTVTAES-ADGL---IMAIEHRRLPLAAV 682 (717)
T ss_pred EEEC---CCChhhhcCCCCC--------EEEEECCCCcccc-----cCCCCeEEEEEe-CCCc---EEEEEECCCCEEEE
Confidence 4332 2456888877654 6999999987433 689999999996 5544 99999998899999
Q ss_pred cccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcC
Q psy14047 272 QFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGS 312 (350)
Q Consensus 272 QfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~ 312 (350)
|||||+..++.. ..+..|+++|++.+...
T Consensus 683 QFHPEsi~T~sg------------~~G~~ilkNfl~~~~~~ 711 (717)
T TIGR01815 683 QFHPESIMTLDG------------GAGLAMIGNVVDRLAAG 711 (717)
T ss_pred EeCCeeCCccCc------------hhHHHHHHHHHHHHhhc
Confidence 999998643211 24789999999988654
No 41
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.90 E-value=4.2e-23 Score=198.27 Aligned_cols=159 Identities=19% Similarity=0.285 Sum_probs=116.9
Q ss_pred hhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhh
Q psy14047 31 IPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLK 110 (350)
Q Consensus 31 i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (350)
+....++.|.+.|+.+.++|++.+.+++.. ...|||+|+||+.|..
T Consensus 250 ~K~nIlr~L~~~G~~v~VvP~~~~~~ei~~--~~pDGIiLSnGPGDP~-------------------------------- 295 (415)
T PLN02771 250 IKHNILRRLASYGCKITVVPSTWPASEALK--MKPDGVLFSNGPGDPS-------------------------------- 295 (415)
T ss_pred hHHHHHHHHHHcCCeEEEECCCCCHHHHhh--cCCCEEEEcCCCCChh--------------------------------
Confidence 457788999999999999999877665543 3789999999986531
Q ss_pred HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeee
Q psy14047 111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENL 190 (350)
Q Consensus 111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~ 190 (350)
.+. .+.+.+++.. . ++||||||+|||+|+.++||++. ....++++.+.
T Consensus 296 ------------------------~~~----~~ie~ik~l~-~--~iPIlGICLGhQlLa~AlGGkv~-K~~~Gh~G~n~ 343 (415)
T PLN02771 296 ------------------------AVP----YAVETVKELL-G--KVPVFGICMGHQLLGQALGGKTF-KMKFGHHGGNH 343 (415)
T ss_pred ------------------------Hhh----HHHHHHHHHH-h--CCCEEEEcHHHHHHHHhcCCeEE-ECCCCcccceE
Confidence 011 1223334433 2 39999999999999999999975 45566677666
Q ss_pred eceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047 191 ALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG 270 (350)
Q Consensus 191 ~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g 270 (350)
|+.... ...+ ..+.++|+++|++. .||+++++++.+..|+. ++++++++.|+||
T Consensus 344 pV~~~~---~~~v---------------~itsqnHg~aVd~~-----sLp~~~~vt~~nlnDgt---vegi~~~~~pi~g 397 (415)
T PLN02771 344 PVRNNR---TGRV---------------EISAQNHNYAVDPA-----SLPEGVEVTHVNLNDGS---CAGLAFPALNVMS 397 (415)
T ss_pred EEEECC---CCCE---------------EEEecCHHHhhccc-----cCCCceEEEEEeCCCCc---EEEEEECCCCEEE
Confidence 764221 1111 14678999999654 68899999998744555 8999999999999
Q ss_pred EcccCCcCCcc
Q psy14047 271 IQFHPEKNAYE 281 (350)
Q Consensus 271 vQfHPE~~~~~ 281 (350)
+|||||..+.+
T Consensus 398 VQFHPEa~pgp 408 (415)
T PLN02771 398 LQYHPEASPGP 408 (415)
T ss_pred EEcCCCCCCCC
Confidence 99999988654
No 42
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.90 E-value=4.4e-23 Score=187.71 Aligned_cols=161 Identities=18% Similarity=0.162 Sum_probs=111.1
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE 112 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (350)
..+.++|++.|..+............ +-++.+||+|++||+.+++
T Consensus 22 g~l~~~l~~~g~~~~v~~~~~~~~~p-~~l~~~dgvii~Ggp~~~~---------------------------------- 66 (239)
T PRK06490 22 GRVGQLLQERGYPLDIRRPRLGDPLP-DTLEDHAGAVIFGGPMSAN---------------------------------- 66 (239)
T ss_pred hHHHHHHHHCCCceEEEeccCCCCCC-CcccccCEEEEECCCCCCC----------------------------------
Confidence 55778999999988776554221111 1256788888888886543
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCc-eeeeee
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDC-FYENLA 191 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~-~~~~~~ 191 (350)
+..+|.. .+.++++++.+++ +||||||+|||+|+.++||+|. ....+. +.+..+
T Consensus 67 -------------------d~~~wi~---~~~~~i~~~~~~~--~PvLGIC~G~Qlla~alGG~V~-~~~~G~~e~G~~~ 121 (239)
T PRK06490 67 -------------------DPDDFIR---REIDWISVPLKEN--KPFLGICLGAQMLARHLGARVA-PHPDGRVEIGYYP 121 (239)
T ss_pred -------------------CCchHHH---HHHHHHHHHHHCC--CCEEEECHhHHHHHHHcCCEee-cCCCCCCccceEE
Confidence 1223332 2567777777776 9999999999999999999985 333222 334445
Q ss_pred ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047 192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI 271 (350)
Q Consensus 192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv 271 (350)
+..+. ...++..++ ..++++|++.+ .||++++++|+| +++. ++++++.+ ++||+
T Consensus 122 i~~~~---~~~~~~~~~----------~~~~~~H~d~~--------~lP~~~~~LA~s-~~~~---~qa~~~~~-~v~g~ 175 (239)
T PRK06490 122 LRPTE---AGRALMHWP----------EMVYHWHREGF--------DLPAGAELLATG-DDFP---NQAFRYGD-NAWGL 175 (239)
T ss_pred eEECC---CcccccCCC----------CEEEEECCccc--------cCCCCCEEEEeC-CCCC---eEEEEeCC-CEEEE
Confidence 54432 222333332 24889999984 799999999997 6666 78999865 79999
Q ss_pred cccCCcCC
Q psy14047 272 QFHPEKNA 279 (350)
Q Consensus 272 QfHPE~~~ 279 (350)
|||||++.
T Consensus 176 QfHPE~~~ 183 (239)
T PRK06490 176 QFHPEVTR 183 (239)
T ss_pred eeCccCCH
Confidence 99999773
No 43
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.90 E-value=1.3e-22 Score=203.29 Aligned_cols=131 Identities=17% Similarity=0.212 Sum_probs=96.8
Q ss_pred ccEEEehHHHHHHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCcc
Q psy14047 157 FPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTD 236 (350)
Q Consensus 157 ~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~ 236 (350)
+||||||+|||+|+.++||+|. ......++....+.. .+..+|.+++..+ .++.||++.+.
T Consensus 78 iPILGIClG~QlLa~a~GG~V~-~~~~~~~G~~~~i~~----~~~~lf~~~~~~~--------~v~~~Hs~~v~------ 138 (531)
T PRK09522 78 LPIIGICLGHQAIVEAYGGYVG-QAGEILHGKASSIEH----DGQAMFAGLTNPL--------PVARYHSLVGS------ 138 (531)
T ss_pred CCEEEEcHHHHHHHHhcCCEEE-eCCceeeeeEEEEee----cCCccccCCCCCc--------EEEEehheecc------
Confidence 9999999999999999999985 332223333222221 2345787776643 69999999996
Q ss_pred ccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCCCC
Q psy14047 237 NGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSF 316 (350)
Q Consensus 237 ~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~~~ 316 (350)
.+|++++++|+ +++. ++++++++.++||+|||||+..++ .+..++++|++.|.+.....
T Consensus 139 -~lP~~l~vlA~--sd~~---v~ai~~~~~~i~GVQFHPEs~~T~---------------~G~~il~NFl~~~~~~~~~~ 197 (531)
T PRK09522 139 -NIPAGLTINAH--FNGM---VMAVRHDADRVCGFQFHPESILTT---------------QGARLLEQTLAWAQQKLEPT 197 (531)
T ss_pred -cCCCCcEEEEe--cCCC---EEEEEECCCCEEEEEecCccccCc---------------chHHHHHHHHHHHhhcCCCC
Confidence 79999999997 4554 899999988999999999988654 37899999999996644444
Q ss_pred CCHHHHHHhhh
Q psy14047 317 ETEEEEKAALI 327 (350)
Q Consensus 317 ~~~~~~~~~l~ 327 (350)
-+-.+..+.+.
T Consensus 198 ~~~~~~l~~~~ 208 (531)
T PRK09522 198 NTLQPILEKLY 208 (531)
T ss_pred CCHHHHHHHhh
Confidence 44444444443
No 44
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.89 E-value=8.4e-23 Score=185.30 Aligned_cols=167 Identities=19% Similarity=0.178 Sum_probs=117.2
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE 112 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (350)
.++.++|++.|..+..++......... -++.+||||++||+.+++..
T Consensus 17 g~i~~~L~~~g~~~~v~~~~~~~~~~~-~~~~~d~lii~Ggp~~~~d~-------------------------------- 63 (234)
T PRK07053 17 GSFEQVLGARGYRVRYVDVGVDDLETL-DALEPDLLVVLGGPIGVYDD-------------------------------- 63 (234)
T ss_pred hHHHHHHHHCCCeEEEEecCCCccCCC-CccCCCEEEECCCCCCCCCC--------------------------------
Confidence 456789999999887777643321011 14578889999988655310
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL 192 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i 192 (350)
+...|.. .+.++++++.+++ +||||||+|+|+|+.++||+|. ... ..+.+..++
T Consensus 64 -------------------~~~p~~~---~~~~~i~~~~~~~--~PvlGIC~G~Qlla~alGg~V~-~~~-~~e~G~~~i 117 (234)
T PRK07053 64 -------------------ELYPFLA---PEIALLRQRLAAG--LPTLGICLGAQLIARALGARVY-PGG-QKEIGWAPL 117 (234)
T ss_pred -------------------CcCCcHH---HHHHHHHHHHHCC--CCEEEECccHHHHHHHcCCcEe-cCC-CCeEeEEEE
Confidence 0112222 2567777777776 9999999999999999999985 332 334456677
Q ss_pred eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047 193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ 272 (350)
Q Consensus 193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ 272 (350)
..++....++++ .++.. ..++++|++.+ .||++++++|+| +.+. +++++..+ ++||+|
T Consensus 118 ~~t~~g~~~pl~-~~~~~--------~~~~~~H~d~~--------~lP~ga~~La~s-~~~~---~qaf~~g~-~~~g~Q 175 (234)
T PRK07053 118 TLTDAGRASPLR-HLGAG--------TPVLHWHGDTF--------DLPEGATLLAST-PACR---HQAFAWGN-HVLALQ 175 (234)
T ss_pred EEeccccCChhh-cCCCc--------ceEEEEeCCEE--------ecCCCCEEEEcC-CCCC---eeEEEeCC-CEEEEe
Confidence 766655455553 34332 36899999988 699999999997 6666 77888754 799999
Q ss_pred ccCCcCCc
Q psy14047 273 FHPEKNAY 280 (350)
Q Consensus 273 fHPE~~~~ 280 (350)
||||++..
T Consensus 176 fHpE~~~~ 183 (234)
T PRK07053 176 FHPEARED 183 (234)
T ss_pred eCccCCHH
Confidence 99998854
No 45
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.89 E-value=1.5e-22 Score=180.48 Aligned_cols=155 Identities=25% Similarity=0.321 Sum_probs=101.3
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCcc-ccCCccCceeeee---
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNEN-ELRTRCDCFYENL--- 190 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v-~~~~~~~~~~~~~--- 190 (350)
++++|+||+||++++..++..+.+. .+.+.++++.+++ +||||||+|||+|+...++.. .++...+......
T Consensus 37 l~~~d~iIlPG~g~~~~~~~~l~~~--gl~~~i~~~~~~~--~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~~~~~~ 112 (210)
T CHL00188 37 LAQVHALVLPGVGSFDLAMKKLEKK--GLITPIKKWIAEG--NPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRLKHS 112 (210)
T ss_pred hhhCCEEEECCCCchHHHHHHHHHC--CHHHHHHHHHHcC--CCEEEECHHHHHHhhccccCCcCCccceeEEEEECCCC
Confidence 5678999999999976555555432 3667788887776 999999999999999876542 2233333222211
Q ss_pred -----------eceeecCC---CCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCC-c
Q psy14047 191 -----------ALEFMPSF---RQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRG-L 255 (350)
Q Consensus 191 -----------~i~~~~~~---~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~-~ 255 (350)
+++.+... .++.+|.++++. ..++++|++.+. |++...++.+ ..++ .
T Consensus 113 ~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~--------~~v~~~HS~~v~---------p~~~~~l~~t-~~~~~~ 174 (210)
T CHL00188 113 PVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLN--------PWAYFVHSYGVM---------PKSQACATTT-TFYGKQ 174 (210)
T ss_pred CCCccCccCCccceecCCcccccCChhhcCCCCC--------CEEEEeCccEec---------CCCCceEEEE-EecCCc
Confidence 11111110 013466666554 479999999884 2334444443 3332 4
Q ss_pred eEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHH
Q psy14047 256 KFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQA 309 (350)
Q Consensus 256 e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~ 309 (350)
.++++++.. ++||+|||||++ . ..+..+.++|++.+
T Consensus 175 ~~v~a~~~~--~i~GvQFHPE~s-~---------------~~G~~il~nfl~~~ 210 (210)
T CHL00188 175 QMVAAIEYD--NIFAMQFHPEKS-G---------------EFGLWLLREFMKKA 210 (210)
T ss_pred ceEEEEecC--CEEEEecCCccc-c---------------HhHHHHHHHHHhhC
Confidence 579999963 899999999987 2 24788999998753
No 46
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.89 E-value=1.7e-22 Score=183.65 Aligned_cols=112 Identities=20% Similarity=0.186 Sum_probs=89.0
Q ss_pred HHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEE
Q psy14047 143 IYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITH 222 (350)
Q Consensus 143 l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~ 222 (350)
+.++++++.+++ +||||||+|+|+|+.++||+|. .... .+.+..++.+++....+++|+.+++.+ .++
T Consensus 73 ~~~~i~~~~~~~--~PvlGIC~G~Qlla~alGg~V~-~~~~-~e~G~~~v~lt~~g~~d~l~~~~~~~~--------~v~ 140 (235)
T PRK08250 73 EQRLINQAIKAG--KAVIGVCLGAQLIGEALGAKYE-HSPE-KEIGYFPITLTEAGLKDPLLSHFGSTL--------TVG 140 (235)
T ss_pred HHHHHHHHHHcC--CCEEEEChhHHHHHHHhCceec-cCCC-CceeEEEEEEccccccCchhhcCCCCc--------EEE
Confidence 456677777666 9999999999999999999985 4443 344456777777666777888877654 589
Q ss_pred EeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCC
Q psy14047 223 NWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNA 279 (350)
Q Consensus 223 ~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~ 279 (350)
++|++.+ .||+++++||+| +.+. +++++..+ ++||+|||||.+.
T Consensus 141 ~~H~d~~--------~lP~~a~~LA~s-~~~~---~qa~~~~~-~~~g~QfHPE~~~ 184 (235)
T PRK08250 141 HWHNDMP--------GLTDQAKVLATS-EGCP---RQIVQYSN-LVYGFQCHMEFTV 184 (235)
T ss_pred EEeccee--------cCCCCCEEEECC-CCCC---ceEEEeCC-CEEEEeecCcCCH
Confidence 9999975 699999999997 6665 77888765 6999999999774
No 47
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.89 E-value=3.2e-22 Score=201.65 Aligned_cols=118 Identities=20% Similarity=0.380 Sum_probs=90.7
Q ss_pred ccEEEehHHHHHHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCcc
Q psy14047 157 FPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTD 236 (350)
Q Consensus 157 ~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~ 236 (350)
+||||||+|||+|+.++||++. ......++...++.. ..+.+|.+++..+ .++++|++++...
T Consensus 74 ~PvLGIClG~QlLa~a~Gg~V~-~~~~~~~G~~~~v~~----~~~~lf~~~~~~~--------~v~~~Hs~~v~~~---- 136 (534)
T PRK14607 74 VPILGVCLGHQAIGYAFGGKIV-HAKRILHGKTSPIDH----NGKGLFRGIPNPT--------VATRYHSLVVEEA---- 136 (534)
T ss_pred CCEEEEcHHHHHHHHHcCCeEe-cCCccccCCceeEEE----CCCcchhcCCCCc--------EEeeccchheecc----
Confidence 9999999999999999999974 333333444333332 2345777776543 5899999998532
Q ss_pred ccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047 237 NGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG 311 (350)
Q Consensus 237 ~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~ 311 (350)
.+|++++++|++ +++. +++++++++|+||+|||||+..++ .+..++++|++.|+.
T Consensus 137 -~lp~~~~vlA~s-~d~~---i~a~~~~~~pi~GvQFHPE~~~t~---------------~g~~i~~nFl~~~~~ 191 (534)
T PRK14607 137 -SLPECLEVTAKS-DDGE---IMGIRHKEHPIFGVQFHPESILTE---------------EGKRILKNFLNYQRE 191 (534)
T ss_pred -cCCCCeEEEEEc-CCCC---EEEEEECCCCEEEEEeCCCCCCCh---------------hHHHHHHHHHHHhhc
Confidence 589999999997 6665 999999998999999999976432 377899999998864
No 48
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.88 E-value=2.4e-22 Score=182.18 Aligned_cols=139 Identities=22% Similarity=0.268 Sum_probs=83.8
Q ss_pred HHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCce----eeeeece-eecC-------CC-----CCcccccCC
Q psy14047 146 IAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCF----YENLALE-FMPS-------FR-----QSLLYSRAP 208 (350)
Q Consensus 146 ~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~----~~~~~i~-~~~~-------~~-----~~~lf~~~~ 208 (350)
.++.+.+.+ +|+||||+|||+|+.++||++..+...... ....|+. .... .. .+.+ ...+
T Consensus 76 ~i~~~~~~~--~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v-~i~~ 152 (235)
T cd01746 76 AIKYARENN--IPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPV-ILKP 152 (235)
T ss_pred HHHHHHHCC--ceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEE-EECC
Confidence 344444555 999999999999999999987432222111 0111111 0000 00 0111 0112
Q ss_pred chhH-Hhhccc-ceEEEeecceeecCCCcccc-ccccceEEEEeecCCCceEEEEEEcCCccEE-EEcccCCcCCccccc
Q psy14047 209 IHVL-QELATS-HITHNWHMWCITPSNFTDNG-LAKEWKVLSTNSNNRGLKFISSVEHKVYPFA-GIQFHPEKNAYEWKL 284 (350)
Q Consensus 209 ~~~~-~~~~~~-~~v~~~H~~~v~~~~~~~~~-L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~-gvQfHPE~~~~~~~~ 284 (350)
.+.. ..++.+ ..++++|+++|.++.+. . ++++++++|++ .+++ +|+++|.+++|++ |+|||||......
T Consensus 153 ~s~l~~~~g~~~~~~n~~H~~~v~~~~~~--~~~~~~l~v~a~~-~ddg--~ieaie~~~~pf~lgvQ~HPE~~~~~~-- 225 (235)
T cd01746 153 GTLAHKYYGKDEVEERHRHRYEVNPEYVD--ELEEAGLRFSGTD-PDGG--LVEIVELPDHPFFVGTQFHPEFKSRPL-- 225 (235)
T ss_pred CChHHHHhCCCEEEEecCcccccCHHHHH--HHhhCCeEEEEEe-CCCC--eEEEEEcCCCCcEEEEECCCCCcCCCC--
Confidence 2222 223333 46899999999654332 3 37899999997 5344 6999999999987 9999999764211
Q ss_pred cCCCCCchHHHHhHHHHHHHHH
Q psy14047 285 TQDNPHTRIAIENARYFFDWLV 306 (350)
Q Consensus 285 ~~~~~h~~~~~~~~~~i~~~Fv 306 (350)
..+.+|..|+
T Consensus 226 ------------~~~~lF~~fv 235 (235)
T cd01746 226 ------------KPHPLFVGFV 235 (235)
T ss_pred ------------CccHHHHHhC
Confidence 1457888874
No 49
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.88 E-value=8.4e-22 Score=205.15 Aligned_cols=127 Identities=23% Similarity=0.319 Sum_probs=98.4
Q ss_pred ccEEEehHHHHHHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCcc
Q psy14047 157 FPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTD 236 (350)
Q Consensus 157 ~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~ 236 (350)
+||||||+|||+|+.++||++. ....+.++....+.. .+..||.++|... +....|..||+..++..
T Consensus 163 iPILGICLGhQ~i~~~~Gg~V~-~~~~~~HG~~s~I~h----~~~~lF~glp~~~----~~~f~v~RYHSL~v~~~---- 229 (918)
T PLN02889 163 IPILGVCLGHQALGYVHGARIV-HAPEPVHGRLSEIEH----NGCRLFDDIPSGR----NSGFKVVRYHSLVIDAE---- 229 (918)
T ss_pred CcEEEEcHHHHHHHHhcCceEE-eCCCceeeeeeeEee----cCchhhcCCCcCC----CCCceEEeCCCcccccC----
Confidence 9999999999999999999985 555566776555543 2456899887621 01236999999999643
Q ss_pred ccccccceEEEEeecCCC--------------------------------------------------ceEEEEEEcCCc
Q psy14047 237 NGLAKEWKVLSTNSNNRG--------------------------------------------------LKFISSVEHKVY 266 (350)
Q Consensus 237 ~~L~~~~~vla~s~~~~~--------------------------------------------------~e~v~ai~~~~~ 266 (350)
.||++++++|++ ++.. ...+|+++|+..
T Consensus 230 -~lP~~L~~~A~t-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~ 307 (918)
T PLN02889 230 -SLPKELVPIAWT-SSSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTR 307 (918)
T ss_pred -CCCCceEEEEEE-CCCcccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeEEEEECCC
Confidence 589999999986 3310 036999999999
Q ss_pred cEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCC
Q psy14047 267 PFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSH 313 (350)
Q Consensus 267 ~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~ 313 (350)
|+||+|||||...++ .+..|+++|++.|+...
T Consensus 308 P~~GVQfHPESi~t~---------------~G~~l~~nF~~~~~~~~ 339 (918)
T PLN02889 308 PHYGLQFHPESIATC---------------YGRQIFKNFREITQDYW 339 (918)
T ss_pred ceEEEEeCCccccCc---------------hhHHHHHHHHHHHHHHh
Confidence 999999999987653 37899999999998653
No 50
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.88 E-value=5e-22 Score=175.84 Aligned_cols=149 Identities=19% Similarity=0.298 Sum_probs=95.5
Q ss_pred HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCc--cccCCccCceeeee-
Q psy14047 114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNE--NELRTRCDCFYENL- 190 (350)
Q Consensus 114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~--v~~~~~~~~~~~~~- 190 (350)
.++++|+||+||+|.+..+++.+.+. .+.+.++++ + +||||||+|||+|+.++++. ...+...+......
T Consensus 35 ~~~~~d~iIlPG~G~~~~~~~~l~~~--~l~~~i~~~---~--~PilGIClG~Qll~~~~~~~~~~~~lg~~~g~v~~~~ 107 (196)
T PRK13170 35 VILAADKLFLPGVGTAQAAMDQLRER--ELIDLIKAC---T--QPVLGICLGMQLLGERSEESGGVDCLGIIDGPVKKMT 107 (196)
T ss_pred HhCCCCEEEECCCCchHHHHHHHHHc--ChHHHHHHc---C--CCEEEECHHHHHHhhhcccCCCCCCcccccEEEEECC
Confidence 46779999999999987666555433 356666654 3 99999999999999998442 22222222222110
Q ss_pred ------e---ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEE
Q psy14047 191 ------A---LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSV 261 (350)
Q Consensus 191 ------~---i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai 261 (350)
| .+.+....++++|+.++.. ..++++|++.+ |++..++|++ + .+..++.++
T Consensus 108 ~~~~~~p~~G~~~v~~~~~~~l~~~l~~~--------~~v~~~Hs~~l----------p~~~~~la~s-~-~~~~~~~~~ 167 (196)
T PRK13170 108 DFGLPLPHMGWNQVTPQAGHPLFQGIEDG--------SYFYFVHSYAM----------PVNEYTIAQC-N-YGEPFSAAI 167 (196)
T ss_pred CCCCCCCccccceeEeCCCChhhhCCCcC--------CEEEEECeeec----------CCCCcEEEEe-c-CCCeEEEEE
Confidence 1 0111112345566666554 47999999755 4455688885 3 334455555
Q ss_pred EcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047 262 EHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS 307 (350)
Q Consensus 262 ~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~ 307 (350)
+. .++||+|||||++. + .+..++++|++
T Consensus 168 ~~--~~i~G~QFHPE~~~-~---------------~G~~~l~nfl~ 195 (196)
T PRK13170 168 QK--DNFFGVQFHPERSG-A---------------AGAQLLKNFLE 195 (196)
T ss_pred Ec--CCEEEEECCCCCcc-c---------------ccHHHHHHHhh
Confidence 54 46999999999874 2 36788888874
No 51
>KOG3179|consensus
Probab=99.88 E-value=2e-22 Score=171.78 Aligned_cols=189 Identities=14% Similarity=0.179 Sum_probs=140.9
Q ss_pred HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA 191 (350)
Q Consensus 112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~ 191 (350)
.++|++|||++|+|+........+|.. .|...+++..... +||+|||+|||+|+.+.||.+. +.+.+..-....
T Consensus 54 ~~Dl~ky~gfvIsGS~~dAf~d~dWI~---KLcs~~kkld~mk--kkvlGICFGHQiiara~Gg~Vg-ra~KG~~~~lg~ 127 (245)
T KOG3179|consen 54 EEDLEKYDGFVISGSKHDAFSDADWIK---KLCSFVKKLDFMK--KKVLGICFGHQIIARAKGGKVG-RAPKGPDLGLGS 127 (245)
T ss_pred hhhhhhhceEEEeCCcccccccchHHH---HHHHHHHHHHhhc--cceEEEeccHHHHHHhhCCccc-cCCCCCcccccc
Confidence 467888999999999887766666755 4788888877665 9999999999999999999974 555542211111
Q ss_pred ceee-cCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047 192 LEFM-PSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG 270 (350)
Q Consensus 192 i~~~-~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g 270 (350)
+..+ ........|+.+|..+ .....|++.+. .+|++++++|.| +.+. ++.+..++ ++++
T Consensus 128 itivk~~~~~~~yFG~~~~~l--------~IikcHqDevl-------e~PE~a~llasS-e~ce---ve~fs~~~-~~l~ 187 (245)
T KOG3179|consen 128 ITIVKDAEKPEKYFGEIPKSL--------NIIKCHQDEVL-------ELPEGAELLASS-EKCE---VEMFSIED-HLLC 187 (245)
T ss_pred eEEEEecccchhhcccchhhh--------hHHhhccccee-------cCCchhhhhccc-cccc---eEEEEecc-eEEE
Confidence 2111 1233556788777765 36788999998 899999999998 7777 77888776 7999
Q ss_pred EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHhhhhcccc
Q psy14047 271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFETEEEEKAALIYNYCP 332 (350)
Q Consensus 271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~~~~~~~~~~~~l~~n~~~ 332 (350)
+|.|||.+..... .-.+-+.....+-..|.+.|++.+..+....+++..|+.||-.
T Consensus 188 fQGHPEyn~eil~------~ivdrv~~~k~~~eef~~~ak~~~En~~~d~~~~~~icKnfLk 243 (245)
T KOG3179|consen 188 FQGHPEYNKEILF------EIVDRVLGTKLVEEEFAEKAKKTMENPEPDRQLAVSICKNFLK 243 (245)
T ss_pred ecCCchhhHHHHH------HHHHHHhcchhhHHHHHHHHHHhhhCCCccHHHHHHHHHHHhc
Confidence 9999997632110 0111223346677799999999999999999999999999853
No 52
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.87 E-value=1e-21 Score=175.27 Aligned_cols=153 Identities=25% Similarity=0.277 Sum_probs=101.1
Q ss_pred HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh------------cCccccCC
Q psy14047 114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS------------NNENELRT 181 (350)
Q Consensus 114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~------------Gg~v~~~~ 181 (350)
+++++|+||+||++.+..+...+... .+.++++++.+++ +|+||||+|+|+|+.++ +|++. ..
T Consensus 34 ~l~~~d~iiipG~~~~~~~~~~~~~~--~~~~~i~~~~~~~--~pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~-~~ 108 (205)
T PRK13141 34 EILAADGVILPGVGAFPDAMANLRER--GLDEVIKEAVASG--KPLLGICLGMQLLFESSEEFGETEGLGLLPGRVR-RF 108 (205)
T ss_pred HhccCCEEEECCCCchHHHHHHHHHc--ChHHHHHHHHHCC--CcEEEECHHHHHhhhccccCCCCCccceEEEEEE-Ec
Confidence 46789999999987754322222111 3567788877776 99999999999999973 33322 11
Q ss_pred ccC-----ceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCce
Q psy14047 182 RCD-----CFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLK 256 (350)
Q Consensus 182 ~~~-----~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e 256 (350)
..+ .+.+..++.. ..++++|+.++..+ .++.+|++.+ .+++++.++|++ +++ .+
T Consensus 109 ~~~~~~~~~~~g~~~i~~---~~~~~l~~~l~~~~--------~v~~~Hs~~v--------~~~~~~~v~a~~-~~~-~~ 167 (205)
T PRK13141 109 PPEEGLKVPHMGWNQLEL---KKESPLLKGIPDGA--------YVYFVHSYYA--------DPCDEEYVAATT-DYG-VE 167 (205)
T ss_pred CCCCCCcccEecCcccee---CCCChhhhCCCCCC--------EEEEECeeEe--------ccCCcCeEEEEE-eCC-cE
Confidence 100 0111122221 23567777766543 5889999988 467788999986 444 33
Q ss_pred EEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHH
Q psy14047 257 FISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQAS 310 (350)
Q Consensus 257 ~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~ 310 (350)
++++... .++||+|||||+.. ..+..++++|++.|+
T Consensus 168 -~~a~~~~-~~i~GvQfHPE~~~----------------~~g~~l~~~fl~~~~ 203 (205)
T PRK13141 168 -FPAAVGK-DNVFGAQFHPEKSG----------------DVGLKILKNFVEMVE 203 (205)
T ss_pred -EEEEEec-CCEEEEeCCCccch----------------HHHHHHHHHHHHHhh
Confidence 5566544 48999999999753 247899999999984
No 53
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.87 E-value=4.5e-21 Score=170.42 Aligned_cols=188 Identities=20% Similarity=0.246 Sum_probs=118.8
Q ss_pred EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccc
Q psy14047 8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAG 87 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~ 87 (350)
.|||+..... ..++ ..++.+++++.|..+..+....+ + -++..|+|+||||+....
T Consensus 2 ~i~vl~~~~~---------~~e~-~~~~~~~l~~~g~~~~~~~~~~~-~----~l~~~d~iii~GG~~~~~--------- 57 (200)
T PRK13527 2 KIGVLALQGD---------VEEH-IDALKRALDELGIDGEVVEVRRP-G----DLPDCDALIIPGGESTTI--------- 57 (200)
T ss_pred EEEEEEECCc---------cHHH-HHHHHHHHHhcCCCeEEEEeCCh-H----HhccCCEEEECCCcHHHH---------
Confidence 3788876542 1122 24666788889987666665432 1 246789999999874321
Q ss_pred eeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHH
Q psy14047 88 AMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQ 167 (350)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~Q 167 (350)
+.+... ..+.++++++.+++ +||||||+|+|
T Consensus 58 ----------------------------------------------~~~~~~-~~~~~~i~~~~~~~--~pilGIC~G~Q 88 (200)
T PRK13527 58 ----------------------------------------------GRLMKR-EGILDEIKEKIEEG--LPILGTCAGLI 88 (200)
T ss_pred ----------------------------------------------HHHHhh-ccHHHHHHHHHHCC--CeEEEECHHHH
Confidence 011000 02567778877777 99999999999
Q ss_pred HHHHHhcCc-cccCCccCceeeeeeceeecC--C------CCCcccccCCchhHHhhcccceEEEeecceeecCCCcccc
Q psy14047 168 LLLYTSNNE-NELRTRCDCFYENLALEFMPS--F------RQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNG 238 (350)
Q Consensus 168 lLa~a~Gg~-v~~~~~~~~~~~~~~i~~~~~--~------~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~ 238 (350)
+|+.++||. +.. ...... +..+...+.. . ....+|..++.. ..++++|++.+. .
T Consensus 89 ll~~~~gg~~v~~-~~~~~l-G~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~H~~~v~-------~ 151 (200)
T PRK13527 89 LLAKEVGDDRVTK-TEQPLL-GLMDVTVKRNAFGRQRDSFEAEIDLSGLDGP--------FHAVFIRAPAIT-------K 151 (200)
T ss_pred HHHhhhcCCccCC-CCCcee-eeeEEEEeeccccCccccEEEeEeccccCCc--------ceEEEEcccccc-------c
Confidence 999999984 321 111111 1223222111 0 012234444443 368999999997 7
Q ss_pred ccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHH
Q psy14047 239 LAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQAS 310 (350)
Q Consensus 239 L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~ 310 (350)
+|++++++|++ +++ +++++. .++||+|||||.+. ...++++|++.++
T Consensus 152 lp~~~~~la~~-~~~----~~a~~~--~~~~g~QfHPE~~~------------------~~~l~~~f~~~~~ 198 (200)
T PRK13527 152 VGGDVEVLAKL-DDR----IVAVEQ--GNVLATAFHPELTD------------------DTRIHEYFLKKVK 198 (200)
T ss_pred cCCCeEEEEEE-CCE----EEEEEE--CCEEEEEeCCCCCC------------------CCHHHHHHHHHHh
Confidence 99999999986 443 335553 37999999999663 2589999999874
No 54
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.87 E-value=2.7e-21 Score=171.94 Aligned_cols=153 Identities=24% Similarity=0.276 Sum_probs=95.9
Q ss_pred HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHH-hhCCCCccEEEehHHHHHHHHH--hcCccccCCccCceeeee
Q psy14047 114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEF-NENRDYFPIMGICLGFQLLLYT--SNNENELRTRCDCFYENL 190 (350)
Q Consensus 114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~-~~~g~~~PIlGIC~G~QlLa~a--~Gg~v~~~~~~~~~~~~~ 190 (350)
.+..+|+||+||++++..++..+.... +.+.++++ .+.+ +||||||+|||+|+.+ .||....++..+......
T Consensus 34 ~l~~~d~lilPG~g~~~~~~~~l~~~~--~~~~l~~~~~~~~--~pvlGiC~G~Q~l~~~~~~~~~~~~lg~~~g~v~~~ 109 (201)
T PRK13152 34 DLQKADKLLLPGVGSFKEAMKNLKELG--FIEALKEQVLVQK--KPILGICLGMQLFLERGYEGGVCEGLGFIEGEVVKF 109 (201)
T ss_pred HHcCCCEEEECCCCchHHHHHHHHHcC--cHHHHHHHHHhCC--CcEEEECHhHHHHhhcccccCCcCCcccccEEEEEC
Confidence 456799999999999765544443322 44555554 3455 9999999999999997 233332233222221110
Q ss_pred e-----------ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEE
Q psy14047 191 A-----------LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFIS 259 (350)
Q Consensus 191 ~-----------i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ 259 (350)
+ .+.+....++++|+.++.. ..++++|++.+. .++ ..+.+++ .+ +..+++
T Consensus 110 ~~~~~~~~~~~g~~~v~~~~~~~l~~~l~~~--------~~~~~vHS~~v~-------~~~--~~v~a~~-~~-g~~~~~ 170 (201)
T PRK13152 110 EEDLNLKIPHMGWNELEILKQSPLYQGIPEK--------SDFYFVHSFYVK-------CKD--EFVSAKA-QY-GHKFVA 170 (201)
T ss_pred CCCCCCcCCccCeEEEEECCCChhhhCCCCC--------CeEEEEcccEee-------cCC--CcEEEEE-CC-CCEEEE
Confidence 0 0111223356677766543 368999999996 232 4566764 33 334577
Q ss_pred EEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047 260 SVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS 307 (350)
Q Consensus 260 ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~ 307 (350)
+++. .++||+|||||++. ..+..++++|++
T Consensus 171 a~~~--~~i~GvQFHPE~~~----------------~~g~~ll~~Fl~ 200 (201)
T PRK13152 171 SLQK--DNIFATQFHPEKSQ----------------NLGLKLLENFAR 200 (201)
T ss_pred EEec--CCEEEEeCCCeecC----------------hhhHHHHHHHHh
Confidence 7774 37999999999762 136789999975
No 55
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.87 E-value=1.6e-21 Score=173.14 Aligned_cols=150 Identities=25% Similarity=0.349 Sum_probs=96.4
Q ss_pred HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh-----------cCccccCCc
Q psy14047 114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS-----------NNENELRTR 182 (350)
Q Consensus 114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~-----------Gg~v~~~~~ 182 (350)
.++++|+||+||++.+......+... .+.+.++++.+++ +||||||+|+|+|+.+. ++++. ...
T Consensus 34 ~l~~~d~lilpG~g~~~~~~~~l~~~--~~~~~i~~~~~~~--~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~-~~~ 108 (199)
T PRK13181 34 EIAGADKVILPGVGAFGQAMRSLRES--GLDEALKEHVEKK--QPVLGICLGMQLLFESSEEGNVKGLGLIPGDVK-RFR 108 (199)
T ss_pred HhccCCEEEECCCCCHHHHHHHHHHC--ChHHHHHHHHHCC--CCEEEECHhHHHhhhhcccCCcCCcceEEEEEE-EcC
Confidence 35679999999998765433222221 2557777777777 99999999999999984 33332 111
Q ss_pred cC----ceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEE
Q psy14047 183 CD----CFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFI 258 (350)
Q Consensus 183 ~~----~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v 258 (350)
.+ .+.+..++. ...++++|+.++.. ..++++|++.+. .++.+.++|++ +. +..++
T Consensus 109 ~~~~~~~~~G~~~v~---~~~~~~lf~~l~~~--------~~~~~~Hs~~v~--------~~~~~~~lA~s-~~-~~~~~ 167 (199)
T PRK13181 109 SEPLKVPQMGWNSVK---PLKESPLFKGIEEG--------SYFYFVHSYYVP--------CEDPEDVLATT-EY-GVPFC 167 (199)
T ss_pred CCCCCCCccCccccc---cCCCChhHcCCCCC--------CEEEEeCeeEec--------cCCcccEEEEE-cC-CCEEE
Confidence 00 011111221 12356677776654 368999999885 23345688886 43 34456
Q ss_pred EEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047 259 SSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS 307 (350)
Q Consensus 259 ~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~ 307 (350)
++++. .++||+|||||++. +.+..++++|++
T Consensus 168 ~~~~~--~~i~GvQFHPE~~~----------------~~g~~ll~nfl~ 198 (199)
T PRK13181 168 SAVAK--DNIYAVQFHPEKSG----------------KAGLKLLKNFAE 198 (199)
T ss_pred EEEEC--CCEEEEECCCccCC----------------HHHHHHHHHHHh
Confidence 66664 37999999999762 247888998875
No 56
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.87 E-value=1.4e-21 Score=174.73 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=97.1
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHh-hCCCCccEEEehHHHHHHHHH------------hcCcccc
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFN-ENRDYFPIMGICLGFQLLLYT------------SNNENEL 179 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~-~~g~~~PIlGIC~G~QlLa~a------------~Gg~v~~ 179 (350)
++++++|+||+||++++..+...+.+. .+.+.++++. +++ +||||||+|||+|+.+ ++|++..
T Consensus 37 ~~l~~~d~lIlpG~~~~~~~~~~l~~~--~~~~~~~~~~~~~~--~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~ 112 (209)
T PRK13146 37 DAVAAADRVVLPGVGAFADCMRGLRAV--GLGEAVIEAVLAAG--RPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVR 112 (209)
T ss_pred HHhcCCCEEEECCCCcHHHHHHHHHHC--CcHHHHHHHHHhCC--CcEEEECHHHHHHhhcccccCCCCCcceEeEEEEE
Confidence 457899999999988765433333322 1344444433 455 9999999999999998 4444321
Q ss_pred CCccC-----ceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCC
Q psy14047 180 RTRCD-----CFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRG 254 (350)
Q Consensus 180 ~~~~~-----~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~ 254 (350)
....+ .+.++.++. ....+++|++++..+ .++++|++.+. .++ ...++|++ +.+.
T Consensus 113 ~~~~~~~~~~p~~G~~~v~---~~~~~~lf~~~~~~~--------~v~~~Hs~~v~-------~~~-~~~~la~s-~~~~ 172 (209)
T PRK13146 113 FQPDGPALKVPHMGWNTVD---QTRDHPLFAGIPDGA--------RFYFVHSYYAQ-------PAN-PADVVAWT-DYGG 172 (209)
T ss_pred cCCCCCCCccCccChHHee---eCCCChhccCCCCCC--------EEEEEeEEEEE-------cCC-CCcEEEEE-cCCC
Confidence 10000 001111221 223566788776543 69999999996 333 56888986 4433
Q ss_pred ceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHH
Q psy14047 255 LKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQA 309 (350)
Q Consensus 255 ~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~ 309 (350)
+ ++++..+ .++||+|||||++. ..+..++++|++.+
T Consensus 173 -~-~~a~~~~-~~i~GvQFHPE~s~----------------~~G~~ll~nfl~~~ 208 (209)
T PRK13146 173 -P-FTAAVAR-DNLFATQFHPEKSQ----------------DAGLALLRNFLAWL 208 (209)
T ss_pred -E-EEEEEec-CCEEEEEcCCcccH----------------HHHHHHHHHHHhhc
Confidence 2 4455443 58999999999762 24778899998763
No 57
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.86 E-value=4.3e-21 Score=171.20 Aligned_cols=157 Identities=19% Similarity=0.209 Sum_probs=101.2
Q ss_pred HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcC--------ccccCCcc
Q psy14047 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNN--------ENELRTRC 183 (350)
Q Consensus 112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg--------~v~~~~~~ 183 (350)
++.+.++|+||+||++++..++..+.+. .|.+.++++.+++ +||||||+|||+|+.+++. .+.+++..
T Consensus 32 ~~~l~~~d~iIlPG~g~~~~~~~~l~~~--gl~~~i~~~~~~~--~pilGiC~G~Q~l~~~~~e~~~~~~~~~~~Glg~~ 107 (210)
T PRK14004 32 PETIENSKALILPGDGHFDKAMENLNST--GLRSTIDKHVESG--KPLFGICIGFQILFESSEETNQGTKKEQIEGLGYI 107 (210)
T ss_pred HHHhccCCEEEECCCCchHHHHHHHHHc--CcHHHHHHHHHcC--CCEEEECHhHHHHHHhcccccCCCcCcccCCccee
Confidence 3456799999999999887666555443 4788888888777 9999999999999998752 12233322
Q ss_pred Cceeee-------------eeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEee
Q psy14047 184 DCFYEN-------------LALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNS 250 (350)
Q Consensus 184 ~~~~~~-------------~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~ 250 (350)
+..... .+++..+ ...+++|.+++.. ..++++|++.+. .+..+.+++++
T Consensus 108 ~~~v~~~~~~~~~~ph~Gw~~v~~~~-~~~~~lf~~l~~~--------~~v~~~HS~~~~--------~~~~l~~sa~~- 169 (210)
T PRK14004 108 KGKIKKFEGKDFKVPHIGWNRLQIRR-KDKSKLLKGIGDQ--------SFFYFIHSYRPT--------GAEGNAITGLC- 169 (210)
T ss_pred EEEEEEcCCCCCcCCccCcccceecc-CCCCccccCCCCC--------CEEEEeceeecC--------CCCcceEEEee-
Confidence 222111 1111111 1345577777654 469999998552 22334555554
Q ss_pred cCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHH
Q psy14047 251 NNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQ 308 (350)
Q Consensus 251 ~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~ 308 (350)
+..+.. ++++. .+.++||+|||||++. + .+..+.++|++.
T Consensus 170 ~~~g~~-~~a~~-~~~~i~GvQFHPE~s~-~---------------~G~~iL~nfl~~ 209 (210)
T PRK14004 170 DYYQEK-FPAVV-EKENIFGTQFHPEKSH-T---------------HGLKLLENFIEF 209 (210)
T ss_pred eECCEE-EEEEE-ecCCEEEEeCCcccCc-h---------------hHHHHHHHHHhh
Confidence 221322 33444 3458999999999885 2 478899999864
No 58
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.86 E-value=2.9e-21 Score=171.43 Aligned_cols=137 Identities=26% Similarity=0.277 Sum_probs=87.1
Q ss_pred HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH------------hcCccccCC
Q psy14047 114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT------------SNNENELRT 181 (350)
Q Consensus 114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a------------~Gg~v~~~~ 181 (350)
+++++|+||+||++.+......+... .+.+.++++.+++ +||||||+|||+|+.+ ++|++. ..
T Consensus 33 ~l~~~d~iiipG~~~~~~~~~~~~~~--~~~~~i~~~~~~~--~pilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~-~~ 107 (198)
T cd01748 33 EILSADKLILPGVGAFGDAMANLRER--GLIEALKEAIASG--KPFLGICLGMQLLFESSEEGGGTKGLGLIPGKVV-RF 107 (198)
T ss_pred HhccCCEEEECCCCcHHHHHHHHHHc--ChHHHHHHHHHCC--CcEEEECHHHHHhccccccCCCCCCCCCcceEEE-EC
Confidence 36679999999987654322112111 3567788887777 9999999999999998 333332 11
Q ss_pred ccC-----ceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCce
Q psy14047 182 RCD-----CFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLK 256 (350)
Q Consensus 182 ~~~-----~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e 256 (350)
... .+.+..++. ...++.+|.+++.. ..++++|++.+. +++.+.++|++ +++. +
T Consensus 108 ~~~~~~~~~~~G~~~v~---~~~~~~lf~~l~~~--------~~v~~~Hs~~v~--------~~~~~~~la~s-~~~~-~ 166 (198)
T cd01748 108 PASEGLKVPHMGWNQLE---ITKESPLFKGIPDG--------SYFYFVHSYYAP--------PDDPDYILATT-DYGG-K 166 (198)
T ss_pred CCCCCceEEEeccceEE---ECCCChhhhCCCCC--------CeEEEEeEEEEe--------cCCcceEEEEe-cCCC-e
Confidence 100 011112222 22355677777654 368999999995 45567889986 4443 3
Q ss_pred EEEEEEcCCccEEEEcccCCcC
Q psy14047 257 FISSVEHKVYPFAGIQFHPEKN 278 (350)
Q Consensus 257 ~v~ai~~~~~~i~gvQfHPE~~ 278 (350)
+. ++. .+.++||+|||||++
T Consensus 167 ~~-~~~-~~~~i~GvQFHPE~~ 186 (198)
T cd01748 167 FP-AAV-EKDNIFGTQFHPEKS 186 (198)
T ss_pred EE-EEE-EcCCEEEEECCCccc
Confidence 33 333 345899999999976
No 59
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.86 E-value=7.2e-21 Score=169.05 Aligned_cols=151 Identities=22% Similarity=0.247 Sum_probs=95.2
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh------------cCccccCCc
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS------------NNENELRTR 182 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~------------Gg~v~~~~~ 182 (350)
++++|+||+||++.+......+. .+.+.++++.+++ +|+||||+|+|+|+.++ ||++.....
T Consensus 36 ~~~~d~iii~G~~~~~~~~~~~~----~~~~~i~~~~~~~--~PilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~ 109 (200)
T PRK13143 36 ILDADGIVLPGVGAFGAAMENLS----PLRDVILEAARSG--KPFLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRFPA 109 (200)
T ss_pred HccCCEEEECCCCCHHHHHHHHH----HHHHHHHHHHHcC--CCEEEECHHHHHHhhhhccCCCCCCcceeeEEEEEcCC
Confidence 56899999999765432222111 3667788888777 99999999999999863 333210000
Q ss_pred -c-CceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEE
Q psy14047 183 -C-DCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISS 260 (350)
Q Consensus 183 -~-~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~a 260 (350)
. ..+....++.. ...+++|++++. ..++++|++.+. +++++.++|++ +++. .++++
T Consensus 110 ~~~~~~~g~~~v~~---~~~~~l~~~l~~---------~~~~~~Hs~~~~--------~~~~~~~la~~-~~~~-~~~~~ 167 (200)
T PRK13143 110 GVKVPHMGWNTVKV---VKDCPLFEGIDG---------EYVYFVHSYYAY--------PDDEDYVVATT-DYGI-EFPAA 167 (200)
T ss_pred CCCCCeecceEEEE---cCCChhhccCCC---------cEEEEEeeeeeC--------CCCcceEEEEE-cCCC-EEEEE
Confidence 0 00111122221 234556655532 247889998883 56678999986 4433 23444
Q ss_pred EEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047 261 VEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG 311 (350)
Q Consensus 261 i~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~ 311 (350)
+. . .++||+|||||++. ..+.+|+++|++.|++
T Consensus 168 ~~-~-~~~~gvQfHPE~~~----------------~~g~~i~~~f~~~~~~ 200 (200)
T PRK13143 168 VC-N-DNVFGTQFHPEKSG----------------ETGLKILENFVELIKR 200 (200)
T ss_pred EE-c-CCEEEEeCCCccch----------------HHHHHHHHHHHHHHhC
Confidence 44 3 38999999999762 2478899999988753
No 60
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.86 E-value=6.9e-21 Score=166.86 Aligned_cols=171 Identities=21% Similarity=0.269 Sum_probs=107.1
Q ss_pred EEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccce
Q psy14047 9 IGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGA 88 (350)
Q Consensus 9 Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~ 88 (350)
|||++.+... .+..+++++.|+.++.+.... + ++.+|||++|||+....
T Consensus 1 igvl~~qg~~--------------~e~~~~l~~~g~~v~~v~~~~------~-l~~~dgiii~Gg~~~~~---------- 49 (183)
T cd01749 1 IGVLALQGDF--------------REHIRALERLGVEVIEVRTPE------D-LEGIDGLIIPGGESTTI---------- 49 (183)
T ss_pred CEEEEecCCc--------------HHHHHHHHHCCCeEEEECCHH------H-hccCCEEEECCchHHHH----------
Confidence 7888876531 344489999999998887632 1 67899999999984321
Q ss_pred eeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHH
Q psy14047 89 MIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQL 168 (350)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~Ql 168 (350)
... .+.. .+.++++++.++| +|+||||+|+|+
T Consensus 50 -----------~~~--------------------------------~~~~---~~~~~i~~~~~~g--~PvlGiC~G~ql 81 (183)
T cd01749 50 -----------GKL--------------------------------LRRT---GLLDPLREFIRAG--KPVFGTCAGLIL 81 (183)
T ss_pred -----------HHH--------------------------------HHhC---CHHHHHHHHHHcC--CeEEEECHHHHH
Confidence 000 0110 2456677777777 999999999999
Q ss_pred HHHHhcCc--cccCCccCceeeeeeceeecC-CCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceE
Q psy14047 169 LLYTSNNE--NELRTRCDCFYENLALEFMPS-FRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKV 245 (350)
Q Consensus 169 La~a~Gg~--v~~~~~~~~~~~~~~i~~~~~-~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~v 245 (350)
|+.++++. ..+++..+......+...... ......+...+ .+...++.+|.+.+. .+|+++++
T Consensus 82 L~~~~~~~~~~~glG~~~~~v~~~~~g~~~g~~~~~l~~~~~~-------~~~~~~~~~h~~~v~-------~~p~~~~~ 147 (183)
T cd01749 82 LAKEVEDQGGQPLLGLLDITVRRNAFGRQVDSFEADLDIPGLG-------LGPFPAVFIRAPVIE-------EVGPGVEV 147 (183)
T ss_pred HHHHhcccCCCCccCceeEEEEeeccccccceEEEcCCCCcCC-------CCccEEEEEECcEEE-------EcCCCcEE
Confidence 99999873 222333332221111000000 00001122221 012357899999997 79999999
Q ss_pred EEEeecCCCceEEEEEEcCCccEEEEcccCCcCC
Q psy14047 246 LSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNA 279 (350)
Q Consensus 246 la~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~ 279 (350)
+|++ +.. +++++.. ++||+|||||.+.
T Consensus 148 la~~--~~~---~~a~~~~--~~~g~qfHPE~~~ 174 (183)
T cd01749 148 LAEY--DGK---IVAVRQG--NVLATSFHPELTD 174 (183)
T ss_pred EEec--CCE---EEEEEEC--CEEEEEcCCccCC
Confidence 9995 333 4477654 6999999999763
No 61
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.85 E-value=4.2e-20 Score=191.80 Aligned_cols=122 Identities=20% Similarity=0.287 Sum_probs=87.2
Q ss_pred CccEEEehHHHHHHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCc
Q psy14047 156 YFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFT 235 (350)
Q Consensus 156 ~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~ 235 (350)
++||||||+|||+|+.++||++. ....+.++....+.. ....+|.+++. + .++++|++.+...
T Consensus 86 ~iPvLGIClG~QlLa~a~GG~v~-~~~~~~hG~~~~v~~----~~~~lf~gl~~-~--------~v~~~Hs~~v~~~--- 148 (742)
T TIGR01823 86 EVPVLGICLGFQSLCLAQGADIS-RLPTPKHGQVYEMHT----NDAAIFCGLFS-V--------KSTRYHSLYANPE--- 148 (742)
T ss_pred CCcEEEEchhhHHHHhhcCCEEE-ECCCCCcCeEEEEEE----CCccccCCCCC-C--------ceeEEEEEEccCC---
Confidence 49999999999999999999975 333344544333432 23457777654 2 4899999988532
Q ss_pred ccccccc--ceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCC
Q psy14047 236 DNGLAKE--WKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSH 313 (350)
Q Consensus 236 ~~~L~~~--~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~ 313 (350)
.++. +.+++.+ .+++ .++++++++.|+||+|||||+...+. .+..||++|++.|.+.+
T Consensus 149 ---~~~~l~~~~~a~~-~~~~--~i~ai~h~~~pi~GVQFHPE~~~s~~--------------g~~~Lf~nFl~~~~~~~ 208 (742)
T TIGR01823 149 ---GIDTLLPLCLTED-EEGI--ILMSAQTKKKPWFGVQYHPESCCSEL--------------GSGKLVSNFLKLAFINN 208 (742)
T ss_pred ---CCCcceEEEEEEc-CCCC--eEEEEEEcCCceEEEEeCcccCCCCc--------------cHHHHHHHHHHHHHHhh
Confidence 3344 4555553 3333 59999999999999999999865432 25789999999998765
Q ss_pred C
Q psy14047 314 H 314 (350)
Q Consensus 314 ~ 314 (350)
.
T Consensus 209 ~ 209 (742)
T TIGR01823 209 V 209 (742)
T ss_pred h
Confidence 4
No 62
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.84 E-value=2.5e-20 Score=163.08 Aligned_cols=153 Identities=22% Similarity=0.316 Sum_probs=98.6
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh-cCccccCCccCceeeeee
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS-NNENELRTRCDCFYENLA 191 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~-Gg~v~~~~~~~~~~~~~~ 191 (350)
+.++++|+||+||++++..++..+.+. .+.+.+++ +.| +||||||+|||+|+... .|...+++..+....+.+
T Consensus 33 ~~l~~~D~lIlPG~g~~~~~~~~L~~~--gl~~~i~~--~~g--~PvlGIClGmQlL~~~~~eg~~~GLgll~~~V~rf~ 106 (192)
T PRK13142 33 KIIDQAETIILPGVGHFKDAMSEIKRL--NLNAILAK--NTD--KKMIGICLGMQLMYEHSDEGDASGLGFIPGNISRIQ 106 (192)
T ss_pred HHhccCCEEEECCCCCHHHHHHHHHHC--CcHHHHHH--hCC--CeEEEECHHHHHHhhhcccCCcCccCceeEEEEECC
Confidence 456789999999999977666655443 26677776 345 99999999999999987 344455666665554432
Q ss_pred cee-ecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047 192 LEF-MPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG 270 (350)
Q Consensus 192 i~~-~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g 270 (350)
... ++...++.+... ..+. +..+|+.|++.+. .++ .+++++ +.+..++.+++.. +++|
T Consensus 107 ~~~~vph~GWn~~~~~--~~l~-----~~~~yFVhSy~v~--------~~~--~v~~~~--~yg~~~~~~v~~~--n~~g 165 (192)
T PRK13142 107 TEYPVPHLGWNNLVSK--HPML-----NQDVYFVHSYQAP--------MSE--NVIAYA--QYGADIPAIVQFN--NYIG 165 (192)
T ss_pred CCCCCCcccccccCCC--Cccc-----ccEEEEECCCeEC--------CCC--CEEEEE--ECCCeEEEEEEcC--CEEE
Confidence 111 122333333211 1110 1368999999983 122 344443 2334477888754 6999
Q ss_pred EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHH
Q psy14047 271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQ 308 (350)
Q Consensus 271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~ 308 (350)
+|||||++. ..+..+.++|++-
T Consensus 166 ~QFHPEkS~----------------~~G~~ll~nf~~~ 187 (192)
T PRK13142 166 IQFHPEKSG----------------TYGLQILRQAIQG 187 (192)
T ss_pred EecCcccCc----------------HhHHHHHHHHHhc
Confidence 999999975 2478888888753
No 63
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.84 E-value=4.7e-20 Score=161.43 Aligned_cols=170 Identities=18% Similarity=0.209 Sum_probs=101.9
Q ss_pred EEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccce
Q psy14047 9 IGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGA 88 (350)
Q Consensus 9 Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~ 88 (350)
|||++.... ..+..++|+++|..+..++.. + -++.+|||+||||.....
T Consensus 2 igvl~~qg~--------------~~e~~~~l~~~g~~~~~v~~~---~----~l~~~d~liipGG~~~~~---------- 50 (184)
T TIGR03800 2 IGVLALQGA--------------VREHARALEALGVEGVEVKRP---E----QLDEIDGLIIPGGESTTL---------- 50 (184)
T ss_pred EEEEEccCC--------------HHHHHHHHHHCCCEEEEECCh---H----HhccCCEEEECCCCHHHH----------
Confidence 888887653 155669999999998888652 1 156789999999864321
Q ss_pred eeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHH
Q psy14047 89 MIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQL 168 (350)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~Ql 168 (350)
..+... ..+.+.++++.++| +||||||+|+|+
T Consensus 51 ---------------------------------------------~~l~~~-~~l~~~i~~~~~~g--~pilGIC~G~ql 82 (184)
T TIGR03800 51 ---------------------------------------------SRLLDK-YGMFEPLRNFILSG--LPVFGTCAGLIM 82 (184)
T ss_pred ---------------------------------------------HHHHHh-ccHHHHHHHHHHcC--CcEEEECHHHHH
Confidence 011000 02456677777777 999999999999
Q ss_pred HHHHhcCcccc-CCccCceeeeeeceeecCCCCCcc-cccCCchhHHhhcccceEEEeecceeecCCCccccccccceEE
Q psy14047 169 LLYTSNNENEL-RTRCDCFYENLALEFMPSFRQSLL-YSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVL 246 (350)
Q Consensus 169 La~a~Gg~v~~-~~~~~~~~~~~~i~~~~~~~~~~l-f~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vl 246 (350)
|+..+.+.... +...+......+...........+ .+..... .......|.+.+. .+|++++++
T Consensus 83 L~~~~~~~~~~~lg~~~~~v~~~~~g~~~~s~~~~l~~~~~~~~-------~~~~~~~h~~~v~-------~lp~~~~vl 148 (184)
T TIGR03800 83 LAKEIIGQKEGYLGLLDMTVERNAYGRQVDSFEAEVDIKGVGDD-------PITGVFIRAPKIV-------SVGNGVEIL 148 (184)
T ss_pred HHhhhccCCCCccCcEEEEEEeeccCCccccEEEEeecccCCCC-------cceEEEEcCCCcc-------cCCCCeEEE
Confidence 99998442110 111111111111000000000000 0011000 1235678999887 899999999
Q ss_pred EEeecCCCceEEEEEEcCCccEEEEcccCCcC
Q psy14047 247 STNSNNRGLKFISSVEHKVYPFAGIQFHPEKN 278 (350)
Q Consensus 247 a~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~ 278 (350)
|++ ++. +.+++.. ++||+|||||++
T Consensus 149 a~~--~~~---~~a~~~~--~~~gvQfHPE~~ 173 (184)
T TIGR03800 149 AKV--GNR---IVAVRQG--NILVSSFHPELT 173 (184)
T ss_pred EEe--CCe---eEEEEeC--CEEEEEeCCccC
Confidence 995 444 5577644 699999999976
No 64
>PRK06186 hypothetical protein; Validated
Probab=99.84 E-value=6.6e-20 Score=163.75 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=80.4
Q ss_pred HHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceee----eeece-eecC---CCCCcccccCCchhHHh
Q psy14047 143 IYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYE----NLALE-FMPS---FRQSLLYSRAPIHVLQE 214 (350)
Q Consensus 143 l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~----~~~i~-~~~~---~~~~~lf~~~~~~~~~~ 214 (350)
+++++++. + +|+||||+|||++...++.++.++.+...... ..|+- ..+. ...+.+. ..+.+....
T Consensus 74 ai~~Are~---~--iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~~~pvi~~~~~~~~~~~h~v~-l~~~S~l~~ 147 (229)
T PRK06186 74 AIRFAREN---G--IPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGDRPVIAPLSCSLVEKTGDIR-LRPGSLIAR 147 (229)
T ss_pred HHHHHHHc---C--CCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCCCCCEEEECccccccCceEEE-ECCCCHHHH
Confidence 45556653 3 99999999999988888887644444433211 01110 0000 0001111 112223233
Q ss_pred hc-ccceE-EEeecceeecCCCccc-cccccceEEEEeecCCCceEEEEEEcCCccE-EEEcccCCcCCccccccCCCCC
Q psy14047 215 LA-TSHIT-HNWHMWCITPSNFTDN-GLAKEWKVLSTNSNNRGLKFISSVEHKVYPF-AGIQFHPEKNAYEWKLTQDNPH 290 (350)
Q Consensus 215 ~~-~~~~v-~~~H~~~v~~~~~~~~-~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i-~gvQfHPE~~~~~~~~~~~~~h 290 (350)
+. .+..+ -+.|.|.|. +...+ -.++++++.|++ +|+. |+++|.+++|+ +|+|||||.... +.
T Consensus 148 iyg~~~i~erhrHryeVN--s~h~q~i~~~GL~vsa~s-~DG~---iEaiE~~~hpf~lGVQwHPE~~s~-----~~--- 213 (229)
T PRK06186 148 AYGTLEIEEGYHCRYGVN--PEFVAALESGDLRVTGWD-EDGD---VRAVELPGHPFFVATLFQPERAAL-----AG--- 213 (229)
T ss_pred HhCCCeeeeeccccEEEC--HHHHHHHhcCCeEEEEEc-CCCC---EEEEEeCCCCcEEEEeCCCCccCC-----CC---
Confidence 32 22221 223333332 21111 127899999997 5554 89999998885 699999996532 21
Q ss_pred chHHHHhHHHHHHHHHHHHHc
Q psy14047 291 TRIAIENARYFFDWLVSQASG 311 (350)
Q Consensus 291 ~~~~~~~~~~i~~~Fv~~~~~ 311 (350)
..+.+|..|+++|+.
T Consensus 214 ------~~~~LF~~Fv~aa~~ 228 (229)
T PRK06186 214 ------RPPPLVRAFLRAARA 228 (229)
T ss_pred ------CCCHHHHHHHHHHhc
Confidence 135799999999864
No 65
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.83 E-value=9.7e-20 Score=161.31 Aligned_cols=153 Identities=21% Similarity=0.191 Sum_probs=91.2
Q ss_pred HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh--cCccccCCccCceeeeee
Q psy14047 114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS--NNENELRTRCDCFYENLA 191 (350)
Q Consensus 114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~--Gg~v~~~~~~~~~~~~~~ 191 (350)
.++.+|+||+||++++....+.+... .+..+++++.+.+ +||||||+|+|+|+.++ |+++.+++..+......+
T Consensus 33 ~l~~~d~lii~G~~~~~~~~~~l~~~--~~~~l~~~~~~~~--~pvlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~~ 108 (196)
T TIGR01855 33 EAELADKLILPGVGAFGAAMARLREN--GLDLFVELVVRLG--KPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLE 108 (196)
T ss_pred HhccCCEEEECCCCCHHHHHHHHHHc--CcHHHHHHHHhCC--CCEEEECHHHHHhhhccccCCCCCCcceeeEEEEECC
Confidence 46789999999987654333333221 1122335566666 99999999999999984 222222222222211110
Q ss_pred --------ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEc
Q psy14047 192 --------LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEH 263 (350)
Q Consensus 192 --------i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~ 263 (350)
...+.....+++|+.++.. ..++++|++.+. ++++. +++.+ +++ ..+.+.++
T Consensus 109 ~~~~~~~g~~~~~~~~~~~l~~~l~~~--------~~v~~~Hs~~v~--------~~~~~-~~a~~-~~g-~~~~~~~~- 168 (196)
T TIGR01855 109 ARKVPHMGWNEVHPVKESPLLNGIDEG--------AYFYFVHSYYAV--------CEEEA-VLAYA-DYG-EKFPAAVQ- 168 (196)
T ss_pred CCCCCcccCeeeeeCCCChHHhCCCCC--------CEEEEECeeEec--------CCCCc-EEEEE-cCC-cEEEEEEe-
Confidence 0111223455677776654 369999999995 23343 55654 433 33444444
Q ss_pred CCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047 264 KVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS 307 (350)
Q Consensus 264 ~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~ 307 (350)
+.++||+|||||++. +.+..++++|++
T Consensus 169 -~~~i~GvQFHPE~~~----------------~~g~~ll~~f~~ 195 (196)
T TIGR01855 169 -KGNIFGTQFHPEKSG----------------KTGLKLLENFLE 195 (196)
T ss_pred -cCCEEEEECCCccCc----------------HhHHHHHHHHHh
Confidence 347999999999763 237788888875
No 66
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.83 E-value=1.9e-19 Score=177.34 Aligned_cols=212 Identities=23% Similarity=0.269 Sum_probs=120.0
Q ss_pred CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCC----eEEEEecCCCHHH--HHHhhcccceEEcCCCCcccc
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGA----RVAPIFIGNPEAY--YRKILGQVNGVLIPGGGASFY 78 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~----~~v~i~~~~~~~~--~~~~l~~~dGli~~GG~~dv~ 78 (350)
.++.|||.+-... -.+.| .+++++|+.+|+ .+.+.+.+.+... -.+.|+.+|||++|||+.+..
T Consensus 288 ~~v~IalVGKY~~--------~~daY--~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~~~ 357 (525)
T TIGR00337 288 HEVTIGIVGKYVE--------LKDSY--LSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGERG 357 (525)
T ss_pred CCcEEEEEeCCcC--------CHHHH--HHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCChh
Confidence 3578999886532 11456 588999999986 3444444332211 112467788888888874311
Q ss_pred cCCcccccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCcc
Q psy14047 79 ADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFP 158 (350)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~P 158 (350)
... .++.++.+.+++ +|
T Consensus 358 ------------------------------------------------------~~g-------~i~ai~~a~e~~--iP 374 (525)
T TIGR00337 358 ------------------------------------------------------VEG-------KILAIKYARENN--IP 374 (525)
T ss_pred ------------------------------------------------------hcC-------hHHHHHHHHHcC--CC
Confidence 000 112233333344 99
Q ss_pred EEEehHHHHHHHHHhcCccccCCccCce----eeeeece-eecCC-------CCCcc----cccCCchhHHhhc-ccc-e
Q psy14047 159 IMGICLGFQLLLYTSNNENELRTRCDCF----YENLALE-FMPSF-------RQSLL----YSRAPIHVLQELA-TSH-I 220 (350)
Q Consensus 159 IlGIC~G~QlLa~a~Gg~v~~~~~~~~~----~~~~~i~-~~~~~-------~~~~l----f~~~~~~~~~~~~-~~~-~ 220 (350)
+||||+|||+|+.++|+++..+...... +...|+. +.... ...+| ..-.+.+....+. ... .
T Consensus 375 ~LGIClG~Qll~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~gS~L~~iyG~~~i~ 454 (525)
T TIGR00337 375 FLGICLGMQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPGTLAFKLYGKEEVY 454 (525)
T ss_pred EEEEcHHHHHHHHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEEECCCChHHHHhCCCcee
Confidence 9999999999999999987544332221 1122321 11100 00011 0011223333332 222 3
Q ss_pred EEEeecceeecCCCccccc-cccceEEEEeecCCCceEEEEEEcCCccEE-EEcccCCcCCccccccCCCCCchHHHHhH
Q psy14047 221 THNWHMWCITPSNFTDNGL-AKEWKVLSTNSNNRGLKFISSVEHKVYPFA-GIQFHPEKNAYEWKLTQDNPHTRIAIENA 298 (350)
Q Consensus 221 v~~~H~~~v~~~~~~~~~L-~~~~~vla~s~~~~~~e~v~ai~~~~~~i~-gvQfHPE~~~~~~~~~~~~~h~~~~~~~~ 298 (350)
.-+.|++.|..... +.+ .++++++|++ .|++ .|+++|++++|++ |+|||||..+... ..
T Consensus 455 erhrHry~VNs~h~--q~l~~~GL~vsa~s-~Dgg--~VEaIE~~~hpfflGVQwHPE~~s~p~--------------~~ 515 (525)
T TIGR00337 455 ERHRHRYEVNNEYR--EQLENKGLIVSGTS-PDGR--LVEIIELPDHPFFVACQFHPEFTSRPN--------------RP 515 (525)
T ss_pred ecccceEEECHHHH--HhhhhCCeEEEEEE-CCCC--EEEEEEECCCCeEEEEecCCCCCCCCC--------------ch
Confidence 34555566642221 112 3789999998 6654 5999999999976 9999999664321 25
Q ss_pred HHHHHHHHHH
Q psy14047 299 RYFFDWLVSQ 308 (350)
Q Consensus 299 ~~i~~~Fv~~ 308 (350)
+.+|..|+++
T Consensus 516 ~~LF~~FV~A 525 (525)
T TIGR00337 516 HPLFLGFVKA 525 (525)
T ss_pred hHHHHHHHhC
Confidence 6899999863
No 67
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.83 E-value=1.7e-19 Score=177.63 Aligned_cols=148 Identities=21% Similarity=0.223 Sum_probs=84.0
Q ss_pred HHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceee----eeec-eeecCC-------CCCcc----cccCCc
Q psy14047 146 IAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYE----NLAL-EFMPSF-------RQSLL----YSRAPI 209 (350)
Q Consensus 146 ~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~----~~~i-~~~~~~-------~~~~l----f~~~~~ 209 (350)
.++.+.+++ +|+||||+|||+|+.++||++.++.+...... ..|+ ...... ....+ ..-.+.
T Consensus 364 ~i~~a~e~~--iPiLGIClGmQll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~g 441 (533)
T PRK05380 364 AIRYARENN--IPFLGICLGMQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPG 441 (533)
T ss_pred HHHHHHHCC--CcEEEEchHHHHHHHHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEECCC
Confidence 344444455 99999999999999999999744444321110 0111 111000 00000 001123
Q ss_pred hhHHhhcccceEEEeecceeecCCCccccc-cccceEEEEeecCCCceEEEEEEcCCccEE-EEcccCCcCCccccccCC
Q psy14047 210 HVLQELATSHITHNWHMWCITPSNFTDNGL-AKEWKVLSTNSNNRGLKFISSVEHKVYPFA-GIQFHPEKNAYEWKLTQD 287 (350)
Q Consensus 210 ~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L-~~~~~vla~s~~~~~~e~v~ai~~~~~~i~-gvQfHPE~~~~~~~~~~~ 287 (350)
+....+.....+...|+....+++...+.+ ..+++++|++ .|++ .++++|.+++|++ |+|||||......
T Consensus 442 S~l~~iyg~~~i~ErhrHryeVNs~h~qal~~~GL~vsa~s-~Dgg--lVEaIEl~~hpfflGVQwHPE~~s~p~----- 513 (533)
T PRK05380 442 TLAAEIYGKEEIYERHRHRYEVNNKYREQLEKAGLVFSGTS-PDGR--LVEIVELPDHPWFVGVQFHPEFKSRPR----- 513 (533)
T ss_pred ChHHHHhCCCceeeecccceecCHHHHHHHhhcCeEEEEEc-CCCC--cEEEEEeCCCCEEEEEeCCCCCCCCCC-----
Confidence 333333323333333333333333222222 2489999997 5554 5999999999975 9999999653211
Q ss_pred CCCchHHHHhHHHHHHHHHHHHHcC
Q psy14047 288 NPHTRIAIENARYFFDWLVSQASGS 312 (350)
Q Consensus 288 ~~h~~~~~~~~~~i~~~Fv~~~~~~ 312 (350)
..+.+|..|+++|++.
T Consensus 514 ---------~~~pLF~~FV~Aa~~~ 529 (533)
T PRK05380 514 ---------RPHPLFAGFVKAALEN 529 (533)
T ss_pred ---------chHHHHHHHHHHHHHH
Confidence 2578999999999764
No 68
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.80 E-value=8.2e-19 Score=175.54 Aligned_cols=158 Identities=26% Similarity=0.263 Sum_probs=103.1
Q ss_pred HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhc--CccccCCccCcee----
Q psy14047 114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN--NENELRTRCDCFY---- 187 (350)
Q Consensus 114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~G--g~v~~~~~~~~~~---- 187 (350)
.++.+|+||+||++++...+..+... .+.+.++++.++| +|+||||+|||+|+.++. |...+++..+...
T Consensus 41 ~l~~~D~lIlpG~gs~~~~m~~L~~~--gl~~~i~~~i~~g--~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~ 116 (538)
T PLN02617 41 DILNADRLIFPGVGAFGSAMDVLNNR--GMAEALREYIQND--RPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFD 116 (538)
T ss_pred hhccCCEEEECCCCCHHHHHHHHHHc--CHHHHHHHHHHcC--CCEEEECHHHHHHhhhhhhcCCccCcccccceEEECC
Confidence 46789999999999875544433332 2567788887777 999999999999998752 2222333222211
Q ss_pred ----------eeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccc-eEEEEeecCCCce
Q psy14047 188 ----------ENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEW-KVLSTNSNNRGLK 256 (350)
Q Consensus 188 ----------~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~-~vla~s~~~~~~e 256 (350)
++.++ .....+++|..++. ..++++|++.+. .++.+. .+++++ +.+.+
T Consensus 117 ~~~~~~vp~iGw~~V---~~~~~spL~~~l~~---------~~vy~vHSy~v~-------~~p~~~~~v~a~~--~~g~~ 175 (538)
T PLN02617 117 SSNGLRVPHIGWNAL---QITKDSELLDGVGG---------RHVYFVHSYRAT-------PSDENKDWVLATC--NYGGE 175 (538)
T ss_pred ccCCCCCCeecceEE---EecCCChhHhcCCC---------cEEEEEeEEEEE-------ecCCCCcEEEEEE--ccCCC
Confidence 11222 22234566655532 358999999875 455443 344553 33334
Q ss_pred EEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCC
Q psy14047 257 FISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHH 314 (350)
Q Consensus 257 ~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~ 314 (350)
+++++++. ++||+|||||++. ..+..++++|++.+....+
T Consensus 176 ~IaAI~~g--nI~GVQFHPE~s~----------------~~G~~L~~nFl~~~~~~~~ 215 (538)
T PLN02617 176 FIASVRKG--NVHAVQFHPEKSG----------------ATGLSILRRFLEPKSSATQ 215 (538)
T ss_pred cEEEEEeC--CEEEEEcCCccCc----------------hhHHHHHHHHHHhhhhhhc
Confidence 78999875 7999999999874 1367899999988764444
No 69
>KOG0026|consensus
Probab=99.80 E-value=3.4e-19 Score=147.37 Aligned_cols=149 Identities=21% Similarity=0.385 Sum_probs=111.4
Q ss_pred cCCEEEe-CCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCcc-Cceeeeeecee
Q psy14047 117 QVNGVLI-PGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRC-DCFYENLALEF 194 (350)
Q Consensus 117 ~~dgvIi-pG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~-~~~~~~~~i~~ 194 (350)
+.+++++ ||+|.+. +.... .+.++++. .++|+||||.|.|.|..++||++. ...+ -.++...+++.
T Consensus 63 NP~~LliSPGPG~P~--DsGIs------~~~i~~f~---~~iP~fGvCMGlQCi~e~fGGkv~-~a~~~i~HGK~S~i~~ 130 (223)
T KOG0026|consen 63 NPRGLLISPGPGTPQ--DSGIS------LQTVLELG---PLVPLFGVCMGLQCIGEAFGGKIV-RSPFGVMHGKSSMVHY 130 (223)
T ss_pred CCCeEEecCCCCCCc--cccch------HHHHHHhC---CCCceeeeehhhhhhhhhhCcEEe-ccCcceeecccccccc
Confidence 4567777 9999986 23332 24455553 469999999999999999999975 4543 34566666654
Q ss_pred ecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCcccccc-ccceEEEEeecCCCceEEEEEEcCCcc-EEEEc
Q psy14047 195 MPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLA-KEWKVLSTNSNNRGLKFISSVEHKVYP-FAGIQ 272 (350)
Q Consensus 195 ~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~-~~~~vla~s~~~~~~e~v~ai~~~~~~-i~gvQ 272 (350)
+......+|+++|+.+ .|..||+.+...+ .|| +.++|+|+ ++++ .|++.+|+++. |-|+|
T Consensus 131 -D~~~~~G~f~g~~q~~--------~V~RYHSLa~~~s-----SlP~d~L~VTaw--TEnG--~iMgaRHkKY~~ieGVQ 192 (223)
T KOG0026|consen 131 -DEKGEEGLFSGLSNPF--------IVGRYHSLVIEKD-----SFPSDELEVTAW--TEDG--LVMAARHRKYKHIQGVQ 192 (223)
T ss_pred -CCccccccccCCCCCe--------EEEeeeeeeeecc-----cCCccceeeeEe--ccCc--EEEeeecccccccccee
Confidence 2223466899998876 5999999999866 467 67999999 4555 59999999998 78999
Q ss_pred ccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHH
Q psy14047 273 FHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQAS 310 (350)
Q Consensus 273 fHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~ 310 (350)
||||+..++ .++.+.++|++...
T Consensus 193 fHPESIlte---------------eGk~~irNflni~~ 215 (223)
T KOG0026|consen 193 FHPESIITT---------------EGKTIVRNFIKIVE 215 (223)
T ss_pred ecchhhhhh---------------hhHHHHHHHHHhcc
Confidence 999987653 46778888887654
No 70
>PLN02327 CTP synthase
Probab=99.79 E-value=6.6e-19 Score=173.78 Aligned_cols=174 Identities=24% Similarity=0.299 Sum_probs=105.0
Q ss_pred HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceee--
Q psy14047 111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYE-- 188 (350)
Q Consensus 111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~-- 188 (350)
+++.|.++|||++||+.... .... .+..++.+.+++ +|+||||+|||+++.++++++.++....+...
T Consensus 356 ~~~~L~~~DGIvvpGGfG~~----~~~G----~i~ai~~are~~--iP~LGIClGmQl~viefaRnvlG~~dAnS~Efdp 425 (557)
T PLN02327 356 AWKLLKGADGILVPGGFGDR----GVEG----KILAAKYARENK--VPYLGICLGMQIAVIEFARSVLGLKDANSTEFDP 425 (557)
T ss_pred hHHhhccCCEEEeCCCCCCc----cccc----HHHHHHHHHHcC--CCEEEEcHHHHHHHHHHHHhhcCCcCCCccccCC
Confidence 45679999999999975321 1111 122333333444 99999999999999999998765554443211
Q ss_pred --eeec-eeecCCC----CCcc-ccc----C--CchhHHhhc-ccceEEEeec--ceeecCCCccccc-cccceEEEEee
Q psy14047 189 --NLAL-EFMPSFR----QSLL-YSR----A--PIHVLQELA-TSHITHNWHM--WCITPSNFTDNGL-AKEWKVLSTNS 250 (350)
Q Consensus 189 --~~~i-~~~~~~~----~~~l-f~~----~--~~~~~~~~~-~~~~v~~~H~--~~v~~~~~~~~~L-~~~~~vla~s~ 250 (350)
..|+ .+.+... +..| ++. + +.+....+. +...++..|+ |.+.+... +.| ..+++++|++
T Consensus 426 ~t~~pvI~~m~e~~~~~~GGtMRLG~~~~~~~~~~S~l~~iYg~~~~VnerHrHRYeVN~q~v--~~le~~gL~vsa~s- 502 (557)
T PLN02327 426 ETPNPCVIFMPEGSKTHMGGTMRLGSRRTYFQTPDCKSAKLYGNVSFVDERHRHRYEVNPEMV--PRLEKAGLSFVGKD- 502 (557)
T ss_pred CCCCCEEEEehhcccccCCceEECCCcccccCCCCCHHHHHhCCccceeeeeccccccCHHHH--HHHhhcCcEEEEEc-
Confidence 1121 1111100 1111 111 1 233333333 3334555554 55543321 145 5899999997
Q ss_pred cCCCceEEEEEEcCCccEE-EEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCC
Q psy14047 251 NNRGLKFISSVEHKVYPFA-GIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSH 313 (350)
Q Consensus 251 ~~~~~e~v~ai~~~~~~i~-gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~ 313 (350)
.++. .++++|++++|++ |+|||||...... ..+.+|..|+++|.++.
T Consensus 503 ~dg~--~IEaiE~~~~pffvGVQfHPE~~s~p~--------------~~~pLF~~Fv~Aa~~~~ 550 (557)
T PLN02327 503 ETGR--RMEIVELPSHPFFVGVQFHPEFKSRPG--------------KPSPLFLGLIAAASGQL 550 (557)
T ss_pred CCCC--EEEEEEeCCCCEEEEEEcCCCCCCCCC--------------CchHHHHHHHHHHHHhH
Confidence 5554 5999999999987 9999999764221 24689999999997653
No 71
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.78 E-value=5.2e-18 Score=153.63 Aligned_cols=195 Identities=21% Similarity=0.295 Sum_probs=112.5
Q ss_pred EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccc
Q psy14047 8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAG 87 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~ 87 (350)
.|||++..... .+.+++|+++|+.++.+... + -+..+|||+||||....
T Consensus 3 ~igVLa~qG~~--------------~e~~~aL~~lG~ev~~v~~~---~----~L~~~DgLILPGGfs~~---------- 51 (248)
T PLN02832 3 AIGVLALQGSF--------------NEHIAALRRLGVEAVEVRKP---E----QLEGVSGLIIPGGESTT---------- 51 (248)
T ss_pred EEEEEeCCCch--------------HHHHHHHHHCCCcEEEeCCH---H----HhccCCEEEeCCCHHHH----------
Confidence 59999987642 66679999999998887652 1 25678899999975321
Q ss_pred eeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHH
Q psy14047 88 AMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQ 167 (350)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~Q 167 (350)
+..+... ..+.+.++++.++| +||||||+|||
T Consensus 52 ---------------------------------------------~~~L~~~-~gl~~~I~~~v~~g--~PvLGiC~Gmq 83 (248)
T PLN02832 52 ---------------------------------------------MAKLAER-HNLFPALREFVKSG--KPVWGTCAGLI 83 (248)
T ss_pred ---------------------------------------------HHHHHhh-cchHHHHHHHHHcC--CCEEEEChhHH
Confidence 1122111 02667777777777 99999999999
Q ss_pred HHHHHhcC----ccccCCccCce---------eeee--eceeecCCCCCcc-cccCCchhHH---hhcccceEEEeecce
Q psy14047 168 LLLYTSNN----ENELRTRCDCF---------YENL--ALEFMPSFRQSLL-YSRAPIHVLQ---ELATSHITHNWHMWC 228 (350)
Q Consensus 168 lLa~a~Gg----~v~~~~~~~~~---------~~~~--~i~~~~~~~~~~l-f~~~~~~~~~---~~~~~~~v~~~H~~~ 228 (350)
+|+...-+ ....++..+.. .... ++. ++...++.+ +..++..++. .......++..|++.
T Consensus 84 lLa~~~~~~~~~~~~~lg~Ldi~v~RN~~g~qv~sfe~~l~-ip~~gwn~~~~~~~~~vFirap~i~~~~~~v~~l~sy~ 162 (248)
T PLN02832 84 FLAERAVGQKEGGQELLGGLDCTVHRNFFGSQINSFETELP-VPELAASEGGPETFRAVFIRAPAILSVGPGVEVLAEYP 162 (248)
T ss_pred HHHHHhcccccCCcceeCCccceEEecccCceeEeEEcCCc-CCccccccccccccceEEecCCceEeCCCcEEEEEEec
Confidence 99988622 21112222211 1111 011 111122221 0111111110 012245688888887
Q ss_pred eecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHH
Q psy14047 229 ITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQ 308 (350)
Q Consensus 229 v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~ 308 (350)
...+. ...+.|++ +.+...++.+++.. +++|+|||||++. ..++.++|++.
T Consensus 163 ~~~~~--------~~~~~a~~-~y~~~~~~~aV~qg--nvlatqFHPEls~------------------d~rih~~Fl~~ 213 (248)
T PLN02832 163 LPSEK--------ALYSSSTD-AEGRDKVIVAVKQG--NLLATAFHPELTA------------------DTRWHSYFVKM 213 (248)
T ss_pred ccccc--------cccccccc-cccCCceEEEEEeC--CEEEEEccCccCC------------------ccHHHHHHHHH
Confidence 64321 12334553 22222567888755 6999999999884 12788899998
Q ss_pred HHc
Q psy14047 309 ASG 311 (350)
Q Consensus 309 ~~~ 311 (350)
++.
T Consensus 214 ~~~ 216 (248)
T PLN02832 214 VSE 216 (248)
T ss_pred HHH
Confidence 864
No 72
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.76 E-value=1.7e-17 Score=150.20 Aligned_cols=209 Identities=17% Similarity=0.168 Sum_probs=124.1
Q ss_pred EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccc
Q psy14047 8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAG 87 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~ 87 (350)
.|+|+..+.. ....+++++|+++|+.+..++..... ++.+|||+||||...-+ ...
T Consensus 2 ~v~Vl~~~G~------------n~~~~~~~al~~~G~~~~~i~~~~~~------l~~~d~lilpGG~~~~d------~~~ 57 (227)
T TIGR01737 2 KVAVIRFPGT------------NCDRDTVYALRLLGVDAEIVWYEDGS------LPDYDGVVLPGGFSYGD------YLR 57 (227)
T ss_pred eEEEEeCCCc------------CcHHHHHHHHHHCCCeEEEEecCCCC------CCCCCEEEECCCCcccc------ccc
Confidence 4788876642 12356779999999999999875431 57899999999862111 000
Q ss_pred eeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHH
Q psy14047 88 AMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQ 167 (350)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~Q 167 (350)
.| . ..... .+.++++++.++| +||+|||.|+|
T Consensus 58 ------------------------------------~~--~----~~~~~----~~~~~l~~~~~~g--~pvlgIC~G~Q 89 (227)
T TIGR01737 58 ------------------------------------AG--A----IAAAS----PIMQEVREFAEKG--VPVLGICNGFQ 89 (227)
T ss_pred ------------------------------------cc--c----hhcch----HHHHHHHHHHHcC--CEEEEECHHHH
Confidence 00 0 00001 2456677777777 99999999999
Q ss_pred HHHHH--hcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecce---eecCCCcccccccc
Q psy14047 168 LLLYT--SNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWC---ITPSNFTDNGLAKE 242 (350)
Q Consensus 168 lLa~a--~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~---v~~~~~~~~~L~~~ 242 (350)
+|+.+ ++|.+. ........ ...+++......+.+++.++.... ......|.++ ++++.+ +.|.+.
T Consensus 90 lLa~~GlL~G~l~-~n~~~~~~-~~~~~~~v~~~~~~~~~~~~~g~~------~~~pi~H~eG~y~~~~~~l--~~l~~~ 159 (227)
T TIGR01737 90 ILVEAGLLPGALL-PNDSLRFI-CRWVYLRVENADTIFTKNYKKGEV------IRIPIAHGEGRYYADDETL--ARLESN 159 (227)
T ss_pred HHHHcCCCCCcee-ecCCCceE-EEeEEEEECCCCChhhccCCCCCE------EEEEeEcCCcCeEcCHHHH--HHHHHC
Confidence 99996 777653 33222211 112222212234556666653210 1111134333 222111 156666
Q ss_pred ceEEEEeec-----------CCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHH
Q psy14047 243 WKVLSTNSN-----------NRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQ 308 (350)
Q Consensus 243 ~~vla~s~~-----------~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~ 308 (350)
.+|+.+-.+ ++....|+++++++++++|+|||||+....|..+ ..++.||++|++.
T Consensus 160 ~~i~~~y~d~~g~~~~~~npngs~~~i~~i~~~~~~~~g~~~HpE~~~~~~~~~----------~~g~~~~~~~~~~ 226 (227)
T TIGR01737 160 DQVVFRYCDEDGDVAEEANPNGSVGNIAGIVNERGNVLGMMPHPERASEKLLGG----------DDGLKLFESLVEW 226 (227)
T ss_pred CcEEEEEECCCCCCCCCCCCCCCHHHHcccCCCCCCEEEEecCchhhcccccCC----------cccHHHHHHHHhh
Confidence 665555312 2234569999999999999999999997655421 2588999999853
No 73
>KOG1224|consensus
Probab=99.72 E-value=3.4e-17 Score=157.16 Aligned_cols=164 Identities=21% Similarity=0.368 Sum_probs=112.1
Q ss_pred ccCCEEEe-CCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeecee
Q psy14047 116 GQVNGVLI-PGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEF 194 (350)
Q Consensus 116 ~~~dgvIi-pG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~ 194 (350)
..+|+||+ ||+|++-.+ ..... +.++..+++ .+||||||+|||.|+.+-|..|. ....+.++....++.
T Consensus 63 ~~FDaIVVgPGPG~P~~a-~d~gI----~~rl~~~~~----~iPilGICLGfQal~l~hGA~v~-~~n~p~HGrvs~i~~ 132 (767)
T KOG1224|consen 63 VAFDAIVVGPGPGSPMCA-ADIGI----CLRLLLECR----DIPILGICLGFQALGLVHGAHVV-HANEPVHGRVSGIEH 132 (767)
T ss_pred cccceEEecCCCCCCCcH-HHHHH----HHHHHHhcC----CCceeeeehhhHhHhhhccccee-cCCCcccceeeeEEe
Confidence 34999999 999998321 11111 223333322 39999999999999999999986 556677776666554
Q ss_pred ecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCcccccccc-ceEEEEeecCCCceEEEEEEcCCccEEEEcc
Q psy14047 195 MPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKE-WKVLSTNSNNRGLKFISSVEHKVYPFAGIQF 273 (350)
Q Consensus 195 ~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~-~~vla~s~~~~~~e~v~ai~~~~~~i~gvQf 273 (350)
- +..+|.+++..-. ....+..||+..+. .+|.+ +.+++++.++++ -.++++.+++.|.||+||
T Consensus 133 ~----~~~~f~gi~sg~~----~~fK~~RYHSL~in-------~~pid~l~il~t~~ddng-~ilMsi~~~~fPhfG~qy 196 (767)
T KOG1224|consen 133 D----GNILFSGIPSGRN----SDFKVVRYHSLIIN-------SLPIDLLPILWTIYDDNG-HILMSIMHSSFPHFGLQY 196 (767)
T ss_pred c----CcEEEccCCCCCc----ccceeEEeEEEEec-------CCchhhhcceeEeecCCc-eEEEEeeccCCCccceee
Confidence 2 3344555543211 12358999999997 66654 667777633333 468999999999999999
Q ss_pred cCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCCCCCCHH
Q psy14047 274 HPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFETEE 320 (350)
Q Consensus 274 HPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~~~~~~~ 320 (350)
|||+...+. +-.+|++|++.+-.++-+-.+-+
T Consensus 197 HPES~~s~~---------------g~~lfkNFl~lt~~~n~~c~~~~ 228 (767)
T KOG1224|consen 197 HPESIASTY---------------GSQLFKNFLDLTVNYNSRCKSTS 228 (767)
T ss_pred ChHHhhhhh---------------hHHHHHHHHHhhccCcccccchh
Confidence 999876543 56799999998866655555433
No 74
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.70 E-value=9e-17 Score=154.23 Aligned_cols=169 Identities=25% Similarity=0.303 Sum_probs=105.8
Q ss_pred CCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceee----eeec-
Q psy14047 118 VNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYE----NLAL- 192 (350)
Q Consensus 118 ~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~----~~~i- 192 (350)
+|||++|||.. ...++-.. ...+++++. ++|+||||+|||+....+..++.++....+... ..|+
T Consensus 344 ~dgIlVPGGFG----~RG~eGkI-~Ai~yAREn-----~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv 413 (533)
T COG0504 344 VDGILVPGGFG----YRGVEGKI-AAIRYAREN-----NIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVV 413 (533)
T ss_pred CCEEEeCCCCC----cCchHHHH-HHHHHHHhc-----CCCEEEEchhHHHHHHHHHHHhcCCccCcccccCCCCCCceE
Confidence 99999999877 33443111 245566653 399999999999999999887755544433221 1222
Q ss_pred eeecCC-------CCCccccc-----CCchhHHhhcccceEEEeecceeecCCCccccc-cccceEEEEeecCCCceEEE
Q psy14047 193 EFMPSF-------RQSLLYSR-----APIHVLQELATSHITHNWHMWCITPSNFTDNGL-AKEWKVLSTNSNNRGLKFIS 259 (350)
Q Consensus 193 ~~~~~~-------~~~~lf~~-----~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L-~~~~~vla~s~~~~~~e~v~ 259 (350)
.+.+.. ...+| +. .+.+++.++.....++..|+.....+.-..+.+ ..++++.++| .++. .++
T Consensus 414 ~l~~eq~~~~~lGGTmRL-G~y~~~l~~gT~a~~lY~~~~v~ERHRHRYEvN~~y~~~le~~Gl~~sg~s-~d~~--lvE 489 (533)
T COG0504 414 DLMPEQKDVVDLGGTMRL-GAYPCRLKPGTLAAKLYGKDEIYERHRHRYEVNNDYRDQLEKAGLVFSGTS-PDGG--LVE 489 (533)
T ss_pred EeccccccCCcCCceeec-cceeeecCCCcHHHHHhCCCeeeeeccchhhcCHHHHHHHHhCCeEEEEEc-CCCC--eEE
Confidence 111110 11111 11 234456666655666665554443332111123 3589999997 5555 699
Q ss_pred EEEcCCccEE-EEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCC
Q psy14047 260 SVEHKVYPFA-GIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHH 314 (350)
Q Consensus 260 ai~~~~~~i~-gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~ 314 (350)
++|..++|+| |+||||| +.+++..|| .+|..|+++|...+.
T Consensus 490 ivE~~~hpfFv~~QfHPE-----f~SrP~~ph---------Plf~~fv~Aa~~~~~ 531 (533)
T COG0504 490 IVELPDHPFFVATQFHPE-----FKSRPLRPH---------PLFVGFVKAALEYKK 531 (533)
T ss_pred EEEcCCCceEEEEccccc-----ccCCCCCCC---------ccHHHHHHHHHHhhc
Confidence 9999999975 9999999 455666666 689999999976543
No 75
>KOG1622|consensus
Probab=99.70 E-value=2.4e-17 Score=155.69 Aligned_cols=186 Identities=20% Similarity=0.258 Sum_probs=126.4
Q ss_pred HHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHHHHh
Q psy14047 36 VKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKIL 115 (350)
Q Consensus 36 v~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 115 (350)
-+.+++.....-++|.+.+...+.. ....|||++||+.+|+..+. | .
T Consensus 33 ~RrvRel~v~se~~p~~t~~~~i~~--~~~rgiIiSGGP~SVya~dA---P----------~------------------ 79 (552)
T KOG1622|consen 33 DRRVRELNVQSEILPLTTPAKTITE--YGPRGIIISGGPNSVYAEDA---P----------S------------------ 79 (552)
T ss_pred HHHHHHHhhhhhhccCCChhhhhhc--CCceEEEEeCCCCccccCcC---C----------C------------------
Confidence 4778888888888999887766654 57899999999987763210 0 0
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeeceee
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFM 195 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~ 195 (350)
.+ ..+.+. | +||||||+|||+|+..+||.|. .......+ ...+.
T Consensus 80 -----------------~d----------p~if~~---~--vpvLGICYGmQ~i~~~~Gg~V~-~~~~RE~G-~~eI~-- 123 (552)
T KOG1622|consen 80 -----------------FD----------PAIFEL---G--VPVLGICYGMQLINKLNGGTVV-KGMVREDG-EDEIE-- 123 (552)
T ss_pred -----------------CC----------hhHhcc---C--CcceeehhHHHHHHHHhCCccc-cccccCCC-CceEE--
Confidence 11 112222 2 9999999999999999999974 33222111 11221
Q ss_pred cCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccC
Q psy14047 196 PSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHP 275 (350)
Q Consensus 196 ~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHP 275 (350)
......||+++.... ...|+..|++.+. .++.+|++.|+| ... .++++.+...++||+||||
T Consensus 124 -v~~~~~lF~~~~~~~------~~~VlltHgdsl~-------~v~~g~kv~a~s-~n~---~va~i~~e~kkiyglqfhp 185 (552)
T KOG1622|consen 124 -VDDSVDLFSGLHKTE------FMTVLLTHGDSLS-------KVPEGFKVVAFS-GNK---PVAGILNELKKIYGLQFHP 185 (552)
T ss_pred -cCchhhhhhhhcccc------eeeeeeccccchh-------hccccceeEEee-cCc---ceeeehhhhhhhhcCCCCC
Confidence 122344777764432 1248999999998 899999999996 333 3778888888999999999
Q ss_pred CcCCccccccCCCCCchHHHHhHHHHHHHHH-HHHHcC-CCCCCCHHHHH
Q psy14047 276 EKNAYEWKLTQDNPHTRIAIENARYFFDWLV-SQASGS-HHSFETEEEEK 323 (350)
Q Consensus 276 E~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv-~~~~~~-~~~~~~~~~~~ 323 (350)
|...+. .+..++.+|+ +.|... +.+.++.+++.
T Consensus 186 EV~~t~---------------~g~~ll~nFl~~vc~~~~n~tmenre~e~ 220 (552)
T KOG1622|consen 186 EVTLTP---------------NGKELLKNFLFDVCGCSGNFTMENREEEC 220 (552)
T ss_pred cccccC---------------chhHHHHHHHHHHcCCccCcchhhhhHHH
Confidence 987542 2667777887 888665 34555555433
No 76
>KOG0370|consensus
Probab=99.68 E-value=3.8e-16 Score=158.04 Aligned_cols=179 Identities=23% Similarity=0.411 Sum_probs=130.4
Q ss_pred hhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhh
Q psy14047 31 IPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLK 110 (350)
Q Consensus 31 i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (350)
+..--+++|.+.|+.+..+|++.+... ...|||+|++|+.|- . .
T Consensus 182 ~K~N~IRcL~~RGa~vtVvPw~~~i~~-----~~yDGlflSNGPGdP--e-----------------~------------ 225 (1435)
T KOG0370|consen 182 LKYNQIRCLVKRGAEVTVVPWDYPIAK-----EEYDGLFLSNGPGDP--E-----------------L------------ 225 (1435)
T ss_pred chHHHHHHHHHhCceEEEecCCccccc-----cccceEEEeCCCCCc--h-----------------h------------
Confidence 345568899999999999999765432 268899999888541 1 0
Q ss_pred HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeee
Q psy14047 111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENL 190 (350)
Q Consensus 111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~ 190 (350)
.+ .+.+-+++..+++ +||+|||+|||+|+.+.|++.. ....+.++++.
T Consensus 226 ----------------------~~-------~~v~~vr~lL~~~--~PvfGIClGHQllA~AaGakT~-KmKyGNRGhNi 273 (1435)
T KOG0370|consen 226 ----------------------CP-------LLVQNVRELLESN--VPVFGICLGHQLLALAAGAKTY-KMKYGNRGHNI 273 (1435)
T ss_pred ----------------------hH-------HHHHHHHHHHhCC--CCeEEEehhhHHHHHhhCCceE-EeeccccCCCc
Confidence 11 1334445555454 9999999999999999999864 45566677777
Q ss_pred eceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047 191 ALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG 270 (350)
Q Consensus 191 ~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g 270 (350)
|..... .... ..+-+.|.++++++ .||.+++.+-++..|+. -+++.|...|++.
T Consensus 274 P~~~~~---tGrc---------------~ITSQNHGYAVD~~-----tLp~gWk~lFvN~NDgS---NEGI~Hss~P~fS 327 (1435)
T KOG0370|consen 274 PCTCRA---TGRC---------------FITSQNHGYAVDPA-----TLPAGWKPLFVNANDGS---NEGIMHSSKPFFS 327 (1435)
T ss_pred cceecc---CceE---------------EEEecCCceeeccc-----cccCCCchheeecccCC---CceEecCCCCcee
Confidence 754211 1111 14677899999876 57899999999866666 5689999999999
Q ss_pred EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCCCCC
Q psy14047 271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFE 317 (350)
Q Consensus 271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~~~~ 317 (350)
+|||||-++.. | +..++|..|++..++....-.
T Consensus 328 vQFHPEat~GP--------~------DTeyLFDiFi~lvkk~kst~t 360 (1435)
T KOG0370|consen 328 VQFHPEATPGP--------H------DTEYLFDVFIELVKKSKSTPT 360 (1435)
T ss_pred eecCCcCCCCC--------c------chHHHHHHHHHHHHHHhcCCc
Confidence 99999977643 2 367999999999988765544
No 77
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=99.68 E-value=1.1e-15 Score=129.57 Aligned_cols=187 Identities=20% Similarity=0.248 Sum_probs=110.8
Q ss_pred CEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcC-CeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccc
Q psy14047 7 PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASG-ARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAK 85 (350)
Q Consensus 7 p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G-~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~ 85 (350)
..|||++.... -...+++++++| +.++.+...+ -|+.+||||||||-+..
T Consensus 1 m~IGVLalQG~--------------v~EH~~~l~~~~~~e~~~Vk~~~-------dL~~~d~LIiPGGESTT-------- 51 (194)
T COG0311 1 MKIGVLALQGA--------------VEEHLEALEKAGGAEVVEVKRPE-------DLEGVDGLIIPGGESTT-------- 51 (194)
T ss_pred CeEEEEEeccc--------------HHHHHHHHHhhcCCceEEEcCHH-------HhccCcEEEecCccHHH--------
Confidence 36999998753 177889999995 8888876532 26788999999987421
Q ss_pred cceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHH-HHHHHHHHHHHHHHhhCCCCccEEEehH
Q psy14047 86 AGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGY-AKAGAMIYKIAKEFNENRDYFPIMGICL 164 (350)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~-~~~~~~l~~~i~~~~~~g~~~PIlGIC~ 164 (350)
+..+ .+. .+++.++++.++| +|+||+|.
T Consensus 52 -----------------------------------------------i~rL~~~~--gl~e~l~~~~~~G--~Pv~GTCA 80 (194)
T COG0311 52 -----------------------------------------------IGRLLKRY--GLLEPLREFIADG--LPVFGTCA 80 (194)
T ss_pred -----------------------------------------------HHHHHHHc--CcHHHHHHHHHcC--CceEEech
Confidence 1122 122 3778889988888 99999999
Q ss_pred HHHHHHHHhcC-c-cccCCccCceeeeeeceeecCCCCCcc-cccCCchhHHhhcccceEEEeecceeecCCCccccccc
Q psy14047 165 GFQLLLYTSNN-E-NELRTRCDCFYENLALEFMPSFRQSLL-YSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAK 241 (350)
Q Consensus 165 G~QlLa~a~Gg-~-v~~~~~~~~~~~~~~i~~~~~~~~~~l-f~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~ 241 (350)
|+.+|+...-+ . +..+...+....+........+-+..+ ++.+...+ ...+.+.....+. ++.+
T Consensus 81 GlIlLakei~~~~~~~~Lg~mdi~V~RNAfGRQ~dSFe~~~di~~~~~~~------~~~avFIRAP~I~-------~vg~ 147 (194)
T COG0311 81 GLILLAKEILDGPEQPLLGLLDVTVRRNAFGRQVDSFETELDIEGFGLPF------PFPAVFIRAPVIE-------EVGD 147 (194)
T ss_pred hhhhhhhhhcCCCCCcccceEEEEEEccccccccccceeeEEeecccCCC------cceEEEEEcceee-------hhcC
Confidence 99999976542 2 222332222221111100000000000 11111100 0123444555555 6777
Q ss_pred cceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047 242 EWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG 311 (350)
Q Consensus 242 ~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~ 311 (350)
+.++||+ -++. +-+++ +.+++|+-||||.+. +.++.++|++.++.
T Consensus 148 ~V~vLa~--l~~~---iVav~--qgn~LatsFHPELT~------------------D~r~Heyf~~~v~~ 192 (194)
T COG0311 148 GVEVLAT--LDGR---IVAVK--QGNILATSFHPELTD------------------DTRLHEYFLDMVLG 192 (194)
T ss_pred cceEeee--eCCE---EEEEE--eCCEEEEecCccccC------------------CccHHHHHHHHhhc
Confidence 8999998 4553 33444 347999999999773 23666677776654
No 78
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.67 E-value=5.2e-16 Score=144.52 Aligned_cols=139 Identities=15% Similarity=0.128 Sum_probs=96.0
Q ss_pred ccCCEEEeCCCCCC--cccchH-HHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccC-ceeeeee
Q psy14047 116 GQVNGVLIPGGGAS--FYADDG-YAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCD-CFYENLA 191 (350)
Q Consensus 116 ~~~dgvIipG~g~~--~~~~~~-~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~-~~~~~~~ 191 (350)
..+||+|++|+... ..+... |.+. ..+++++++.. +|+||||.|+|+++.++||... ...+ ...+..+
T Consensus 98 ~~~DG~IITGAp~e~~~fedv~YW~El-~~i~~w~~~~~-----~s~LgICwGaQa~a~algGi~k--~~~~~K~~Gv~~ 169 (302)
T PRK05368 98 EKFDGLIITGAPVEQLPFEDVDYWDEL-KEILDWAKTHV-----TSTLFICWAAQAALYHLYGIPK--YTLPEKLSGVFE 169 (302)
T ss_pred CCCCEEEEcCCCCCCccCCCCchHHHH-HHHHHHHHHcC-----CCEEEEcHHHHHHHHHcCCCcc--CCCCCceeEEEE
Confidence 57999999998865 333333 4332 25777877653 9999999999999999999522 2212 1112222
Q ss_pred ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047 192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI 271 (350)
Q Consensus 192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv 271 (350)
...+ ...++|++++++.+ .+.+.|...|..+.. .++++++|||.| +.++ ++++..++.+++++
T Consensus 170 ~~~~--~~~~pL~~g~~d~F--------~~phSr~~~V~~~~i---~~~~~l~vLA~S-~~~g---v~~~~~~~~r~~~v 232 (302)
T PRK05368 170 HRVL--DPHHPLLRGFDDSF--------LVPHSRYTEVREEDI---RAATGLEILAES-EEAG---VYLFASKDKREVFV 232 (302)
T ss_pred EEEc--CCCChhhcCCCCcc--------ccceeehhhccHHHh---ccCCCCEEEecC-CCCC---eEEEEeCCCCEEEE
Confidence 2221 23668888888765 366777777743222 578999999998 7777 77887767689999
Q ss_pred cccCCcCC
Q psy14047 272 QFHPEKNA 279 (350)
Q Consensus 272 QfHPE~~~ 279 (350)
|+|||...
T Consensus 233 QgHPEYd~ 240 (302)
T PRK05368 233 TGHPEYDA 240 (302)
T ss_pred ECCCCCCH
Confidence 99999764
No 79
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.61 E-value=9.5e-15 Score=125.91 Aligned_cols=165 Identities=15% Similarity=0.142 Sum_probs=94.6
Q ss_pred CEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCccccc
Q psy14047 7 PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKA 86 (350)
Q Consensus 7 p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~ 86 (350)
..|||++.+.. ..+..++|++.|+.++.+.. .++ ++.+|+|+||||....
T Consensus 3 ~~igVLalqG~--------------~~Eh~~al~~lG~~v~~v~~---~~~----l~~~D~LILPGG~~t~--------- 52 (179)
T PRK13526 3 QKVGVLAIQGG--------------YQKHADMFKSLGVEVKLVKF---NND----FDSIDRLVIPGGESTT--------- 52 (179)
T ss_pred cEEEEEECCcc--------------HHHHHHHHHHcCCcEEEECC---HHH----HhCCCEEEECCChHHH---------
Confidence 57999998753 14577899999998766652 222 4678888888875321
Q ss_pred ceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHH
Q psy14047 87 GAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGF 166 (350)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~ 166 (350)
.+..+... .+.+.++++.+ + +||+|||.|+
T Consensus 53 ---------------------------------------------~~~ll~~~--~l~~~Ik~~~~-~--kpilGICaG~ 82 (179)
T PRK13526 53 ---------------------------------------------LLNLLNKH--QIFDKLYNFCS-S--KPVFGTCAGS 82 (179)
T ss_pred ---------------------------------------------HHHHhhhc--CcHHHHHHHHc-C--CcEEEEcHHH
Confidence 01111111 26677777763 4 7999999999
Q ss_pred HHHHHHhcCccccCCccCceeeeeeceeecCCCCCcc-cccCCchhHHhhcccceEEEeecceeecCCCccccccccceE
Q psy14047 167 QLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLL-YSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKV 245 (350)
Q Consensus 167 QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~l-f~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~v 245 (350)
|+|+.... +++..+....+........+-...+ +.+. .....+.....+. +++++.++
T Consensus 83 qlL~~~s~----~Lg~idg~V~Rn~~Grq~~sf~~~~~~~~~----------~~~~vFiRAP~i~-------~~~~~v~v 141 (179)
T PRK13526 83 IILSKGEG----YLNLLDLEVQRNAYGRQVDSFVADISFNDK----------NITGVFIRAPKFI-------VVGNQVDI 141 (179)
T ss_pred HHHHccCC----CCCCccEEEEEcCCCCccceeeeecCcCCc----------eEEEEEEcCceEe-------EcCCCcEE
Confidence 99998521 2333333222111100000000000 0111 0123334444444 67899999
Q ss_pred EEEeecCCCceEEEEEEcCCccEEEEcccCCcCC
Q psy14047 246 LSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNA 279 (350)
Q Consensus 246 la~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~ 279 (350)
||+ .++. +-+++- .+++|+-||||.+.
T Consensus 142 la~--~~~~---~v~v~q--~~~l~~~FHPElt~ 168 (179)
T PRK13526 142 LSK--YQNS---PVLLRQ--ANILVSSFHPELTQ 168 (179)
T ss_pred EEE--ECCE---EEEEEE--CCEEEEEeCCccCC
Confidence 998 4443 445553 47999999999763
No 80
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.60 E-value=2.6e-14 Score=128.57 Aligned_cols=207 Identities=19% Similarity=0.207 Sum_probs=116.8
Q ss_pred EEEEEccCCCCCCCCCCCCcccchhHHHHHHHH-HcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCccccc
Q psy14047 8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVE-ASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKA 86 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~-~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~ 86 (350)
.|+|+..+.. ....+.+++++ .+|+.+..++.... .++..|+|+||||...-+ ..
T Consensus 2 ~v~Vl~~~G~------------n~~~d~~~a~~~~~G~~~~~v~~~~~------~l~~~D~lvipGG~~~~d--~l---- 57 (219)
T PRK03619 2 KVAVIVFPGS------------NCDRDMARALRDLLGAEPEYVWHKET------DLDGVDAVVLPGGFSYGD--YL---- 57 (219)
T ss_pred EEEEEecCCc------------ChHHHHHHHHHhcCCCeEEEEecCcC------CCCCCCEEEECCCCchhh--hh----
Confidence 4788887643 12355678998 89999888876432 267889999999862110 00
Q ss_pred ceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHH
Q psy14047 87 GAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGF 166 (350)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~ 166 (350)
+ .| . ..... .+.++++++.++| +||+|||.|+
T Consensus 58 ------------------~------------------~~--~----~~~~~----~~~~~l~~~~~~g--~~ilgIC~G~ 89 (219)
T PRK03619 58 ------------------R------------------CG--A----IAAFS----PIMKAVKEFAEKG--KPVLGICNGF 89 (219)
T ss_pred ------------------c------------------cc--h----hhhch----HHHHHHHHHHHCC--CEEEEECHHH
Confidence 0 00 0 00011 3567777777777 9999999999
Q ss_pred HHHHHH--hcCccccCCccCce-eeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeec---ceeecCCCcccccc
Q psy14047 167 QLLLYT--SNNENELRTRCDCF-YENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHM---WCITPSNFTDNGLA 240 (350)
Q Consensus 167 QlLa~a--~Gg~v~~~~~~~~~-~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~---~~v~~~~~~~~~L~ 240 (350)
|+|+.+ ++|++. ....... ..+..++. ....+.+++.+.... ...+...|+ +.+..+.. +.|.
T Consensus 90 qlLa~~GLL~g~l~-~n~~~~~~~~~v~v~i--~~~~~~~~~~~~~g~------~~~~~~aH~~~r~~~~~~~~--~~l~ 158 (219)
T PRK03619 90 QILTEAGLLPGALT-RNASLKFICRDVHLRV--ENNDTPFTSGYEKGE------VIRIPIAHGEGNYYADEETL--KRLE 158 (219)
T ss_pred HHHHHcCCCCCeEE-EcCCCcEEEEEEEEEE--CCCCChhhcCCCCCC------EEEEEEEcCcccEEECHHHH--HHHH
Confidence 999997 677653 2222211 12222221 223455665553211 011223444 33321111 1453
Q ss_pred -ccceEEEEee--cCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047 241 -KEWKVLSTNS--NNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS 307 (350)
Q Consensus 241 -~~~~vla~s~--~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~ 307 (350)
.++.++..+. +++...-|+++...+..++|+|||||+....+. |+ ..++.||..|++
T Consensus 159 ~~~~~~~~~~~~npngs~~~ia~i~~~~~~~~g~~~HPE~~~~~~~------~~----~~g~~lf~~~v~ 218 (219)
T PRK03619 159 GNGQVVFRYCDENPNGSVNDIAGIVNEKGNVLGMMPHPERAVEPLL------GS----TDGLKLFESLLK 218 (219)
T ss_pred hCCcEEEEEcCCCCCCCHHHhcccCCCCCCEEEEeCCCCccccCcc------CC----CcCHHHHHHHhh
Confidence 3455444420 334333477777766679999999999865332 21 247889999975
No 81
>KOG0623|consensus
Probab=99.58 E-value=7.7e-15 Score=134.58 Aligned_cols=177 Identities=20% Similarity=0.254 Sum_probs=113.7
Q ss_pred HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhc--CccccCCccCceee-
Q psy14047 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN--NENELRTRCDCFYE- 188 (350)
Q Consensus 112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~G--g~v~~~~~~~~~~~- 188 (350)
|.++.++|.+|+||.|.+...++.+.+.+ +.+.++++.++| +|++|||.|.|+|....- +...+++.++....
T Consensus 34 P~DI~~a~rLIfPGVGnfg~~~D~L~~~G--f~eplr~Yiesg--kPfmgicvGlQaLF~gSvE~p~skGLgvipg~v~R 109 (541)
T KOG0623|consen 34 PGDILNADRLIFPGVGNFGPAMDVLNRTG--FAEPLRKYIESG--KPFMGICVGLQALFDGSVENPPSKGLGVIPGIVGR 109 (541)
T ss_pred chhhccCceEeecCcccchHHHHHHhhhh--hHHHHHHHHhcC--CCeEeehhhHHHHhcccccCCCcCcccccccceec
Confidence 34577899999999999999999988876 889999999999 999999999999985321 11223333332221
Q ss_pred ------eeec-ee--ecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCcccccc-ccceEEEEeecCCCceEE
Q psy14047 189 ------NLAL-EF--MPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLA-KEWKVLSTNSNNRGLKFI 258 (350)
Q Consensus 189 ------~~~i-~~--~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~-~~~~vla~s~~~~~~e~v 258 (350)
.+|. .+ -....++.+|...|. ..+|+.|++-...... .|+ ++|++... .-+.++||
T Consensus 110 FD~s~k~VPhIGWNsc~v~sd~effg~~p~---------~~~YFVHSyl~~ek~~---~len~~wkiat~--kYG~E~Fi 175 (541)
T KOG0623|consen 110 FDASAKIVPHIGWNSCQVGSDSEFFGDVPN---------RHVYFVHSYLNREKPK---SLENKDWKIATC--KYGSESFI 175 (541)
T ss_pred ccCCCCcCCcccccccccCCcccccccCCC---------ceEEEEeeeccccccc---CCCCCCceEeee--ccCcHHHH
Confidence 1221 11 112233444554444 3689999996553322 333 56877443 34446788
Q ss_pred EEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHhhhhc
Q psy14047 259 SSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFETEEEEKAALIYN 329 (350)
Q Consensus 259 ~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~~~~~~~~~~~~l~~n 329 (350)
.+|... +|+++|||||++.. .+....+.|+. +......|.+. +.|+.|
T Consensus 176 ~ai~kn--N~~AtQFHPEKSG~----------------aGL~vl~~FL~---~~~ppips~e~--~kl~en 223 (541)
T KOG0623|consen 176 SAIRKN--NVHATQFHPEKSGE----------------AGLSVLRRFLH---QQSPPIPSAET--QKLMEN 223 (541)
T ss_pred HHHhcC--ceeeEecccccccc----------------hhHHHHHHHHh---ccCCCCCchhh--hhhhhc
Confidence 888754 69999999999852 45667777776 22333445443 445555
No 82
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.58 E-value=1.5e-13 Score=120.71 Aligned_cols=205 Identities=21% Similarity=0.223 Sum_probs=116.1
Q ss_pred CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhc-ccceEEcCCCCcccccCCcc
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILG-QVNGVLIPGGGASFYADDGY 83 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~-~~dGli~~GG~~dv~~~~~~ 83 (350)
.+|.|+|+-.|.. +. ......+++.+|+.+..++..+.. +. ..|+|++|||=+
T Consensus 1 ~~~kvaVi~fpGt---N~---------d~d~~~A~~~aG~~~~~V~~~d~~------~~~~~d~vv~pGGFS-------- 54 (231)
T COG0047 1 ARPKVAVLRFPGT---NC---------DYDMAAAFERAGFEAEDVWHSDLL------LGRDFDGVVLPGGFS-------- 54 (231)
T ss_pred CCceEEEEEcCCc---Cc---------hHHHHHHHHHcCCCceEEEeeecc------cCCCccEEEEcCCCC--------
Confidence 3799999998864 11 145567889999999999986532 34 577788887752
Q ss_pred cccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCccc-chHHHHHHHHHHHHHHHHhhCCCCccEEEe
Q psy14047 84 AKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYA-DDGYAKAGAMIYKIAKEFNENRDYFPIMGI 162 (350)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~-~~~~~~~~~~l~~~i~~~~~~g~~~PIlGI 162 (350)
..+. +..+......+.+.++++.++| +|+|||
T Consensus 55 ---------------------------------------------yGDyLr~Gaiaa~~~v~~~v~~~a~~g--~~vLGI 87 (231)
T COG0047 55 ---------------------------------------------YGDYLRAGAIAAIAPVMDEVREFAEKG--KPVLGI 87 (231)
T ss_pred ---------------------------------------------cccccCcchHHhhHHHHHHHHHHHHCC--CeEEEE
Confidence 1110 1112222235788888888888 999999
Q ss_pred hHHHHHHHHH--hcCccccCCccCce-eeeeeceeecCCCCCcccccCCc-------------------hhHHhhc-ccc
Q psy14047 163 CLGFQLLLYT--SNNENELRTRCDCF-YENLALEFMPSFRQSLLYSRAPI-------------------HVLQELA-TSH 219 (350)
Q Consensus 163 C~G~QlLa~a--~Gg~v~~~~~~~~~-~~~~~i~~~~~~~~~~lf~~~~~-------------------~~~~~~~-~~~ 219 (350)
|.|+|+|..+ +-|.+. +...... .....+... ...+...+.+.. ...+++. +..
T Consensus 88 CNGfQiL~e~gLlPGal~-~N~s~~F~cr~v~l~V~--~~~t~ft~~~~~g~~i~ipVAHgEGr~~~~~~~l~~l~~ngq 164 (231)
T COG0047 88 CNGFQILSEAGLLPGALT-RNESLRFECRWVYLRVE--NNNTPFTSGYEGGEVIPIPVAHGEGRYYADDETLAELEENGQ 164 (231)
T ss_pred cchhHHHHHcCcCCccee-cCCCCceEEEEEEEEEe--cCCCHHHHhcCCCceEEEEEeecceeEEccHHHHHHHhhCCe
Confidence 9999999954 123221 2222111 111222111 112222222211 1111122 223
Q ss_pred eEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHH
Q psy14047 220 ITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENAR 299 (350)
Q Consensus 220 ~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~ 299 (350)
.++.|+..... .+- ..+ +++...-|++|...+++|+|++.||||....|... ++.+
T Consensus 165 vvfrY~d~~G~------------~~~-~~N-PNGS~~~IaGI~n~~G~V~gmMPHPERa~~~~~g~----------~Dg~ 220 (231)
T COG0047 165 VVFRYVDNNGE------------TEE-YAN-PNGSVNGIAGITNEDGNVLGMMPHPERASESLLGG----------EDGL 220 (231)
T ss_pred EEEEEecCCCc------------eee-eeC-CCCChhhceeEEcCCCCEEEecCCchhhhhcccCC----------chHH
Confidence 33443321111 000 122 44555569999999999999999999997766432 3478
Q ss_pred HHHHHHHHHH
Q psy14047 300 YFFDWLVSQA 309 (350)
Q Consensus 300 ~i~~~Fv~~~ 309 (350)
++|...++.+
T Consensus 221 ~lF~s~~~~~ 230 (231)
T COG0047 221 RLFRSARKYL 230 (231)
T ss_pred HHHHHHHHhh
Confidence 8888776653
No 83
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=99.57 E-value=4.9e-15 Score=127.11 Aligned_cols=170 Identities=18% Similarity=0.250 Sum_probs=93.8
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE 112 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (350)
...++.|+++|+.++.+...++ |+.+||||||||.+..
T Consensus 9 ~EH~~~l~~lg~~~~~Vr~~~d-------L~~~dgLIiPGGESTt----------------------------------- 46 (188)
T PF01174_consen 9 REHIRMLERLGAEVVEVRTPED-------LEGLDGLIIPGGESTT----------------------------------- 46 (188)
T ss_dssp HHHHHHHHHTTSEEEEE-SGGG-------GTT-SEEEE-SS-HHH-----------------------------------
T ss_pred HHHHHHHHHcCCCeEEeCCHHH-------HccCCEEEECCCcHHH-----------------------------------
Confidence 6678899999999977765332 5778999999987431
Q ss_pred HHhccCCEEEeCCCCCCcccchHH-HHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCc-cccCCccCceeeee
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGY-AKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNE-NELRTRCDCFYENL 190 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~-~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~-v~~~~~~~~~~~~~ 190 (350)
+..+ .+. .|++.++++..+| .+||||+|.|+.+|+....+. ...++.++...
T Consensus 47 --------------------i~~ll~~~--gL~~~l~~~~~~g-~~Pv~GTCAGlIlLa~~v~~~~q~~Lg~ldi~V--- 100 (188)
T PF01174_consen 47 --------------------IGKLLRRY--GLFEPLREFIRSG-SKPVWGTCAGLILLAKEVEGQGQPLLGLLDITV--- 100 (188)
T ss_dssp --------------------HHHHHHHT--THHHHHHHHHHTT---EEEEETHHHHHHEEEECSSCCTSS--EEEEE---
T ss_pred --------------------HHHHHHHc--CCHHHHHHHHHcC-CCceeehhHHHHHhhhhhhhcccccccceeEEE---
Confidence 1112 222 3778888888775 489999999999999765443 11122111111
Q ss_pred eceeecCCCCCcccccCCchhHH-----hhcccceEEEeecceeecCCCcccccc--ccceEEEEeecCCCceEEEEEEc
Q psy14047 191 ALEFMPSFRQSLLYSRAPIHVLQ-----ELATSHITHNWHMWCITPSNFTDNGLA--KEWKVLSTNSNNRGLKFISSVEH 263 (350)
Q Consensus 191 ~i~~~~~~~~~~lf~~~~~~~~~-----~~~~~~~v~~~H~~~v~~~~~~~~~L~--~~~~vla~s~~~~~~e~v~ai~~ 263 (350)
..| . |+..-++|.. .++......+..-..+. ++. ++.+++|+ .++. +-+++
T Consensus 101 ~RN----a-----fGrQ~~SFe~~l~i~~~~~~~~avFIRAP~I~-------~v~~~~~v~vla~--~~g~---iVav~- 158 (188)
T PF01174_consen 101 RRN----A-----FGRQLDSFEADLDIPGLGEPFPAVFIRAPVIE-------EVGSPEGVEVLAE--LDGK---IVAVR- 158 (188)
T ss_dssp ETT----T-----TCSSSCEEEEEEEETTTESEEEEEESS--EEE-------EE--TTTEEEEEE--ETTE---EEEEE-
T ss_pred Ecc----c-----cccchhcEEEEEEeecCCCcEEEEEcCCcEEE-------Eeecccccccccc--cccc---eEEEE-
Confidence 111 0 1111111100 00111233444444454 455 68899998 4443 44555
Q ss_pred CCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHH
Q psy14047 264 KVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQAS 310 (350)
Q Consensus 264 ~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~ 310 (350)
..+++|+-||||.+. ++.++.++|++.+.
T Consensus 159 -qgn~latsFHPELT~-----------------D~~r~H~yFl~~v~ 187 (188)
T PF01174_consen 159 -QGNILATSFHPELTD-----------------DDTRIHEYFLEMVV 187 (188)
T ss_dssp -ETTEEEESS-GGGSS-----------------THCHHHHHHHHHHC
T ss_pred -ecCEEEEEeCCcccC-----------------chhHHHHHHHHHhh
Confidence 237999999999763 12578889988874
No 84
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.55 E-value=2.3e-13 Score=125.10 Aligned_cols=55 Identities=20% Similarity=0.355 Sum_probs=38.3
Q ss_pred CCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCC-c-hHHHHhHHHHHHHHHHHHHc
Q psy14047 253 RGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPH-T-RIAIENARYFFDWLVSQASG 311 (350)
Q Consensus 253 ~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h-~-~~~~~~~~~i~~~Fv~~~~~ 311 (350)
+...-|++|..++++++|++.||||....|.- +| + ...-.++..||+.+++..++
T Consensus 203 Gs~~~IAGi~~~~G~vlglMpHPEr~~~~~~~----~~~~~~~~~~~g~~~f~~~~~~~~~ 259 (261)
T PRK01175 203 GSIYNIAGITNEKGNVIGLMPHPERAFYGYQH----PYWEKEEDYGDGKIFFDSLINYLRK 259 (261)
T ss_pred CChhhcceeECCCCCEEEEcCCHHHhhchhhc----cccccccCCCchHHHHHHHHHHHHh
Confidence 33345899999999999999999999776531 11 0 01113678999998876554
No 85
>KOG2387|consensus
Probab=99.47 E-value=1.8e-13 Score=129.47 Aligned_cols=163 Identities=25% Similarity=0.374 Sum_probs=95.5
Q ss_pred hhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceee
Q psy14047 109 LKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYE 188 (350)
Q Consensus 109 ~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~ 188 (350)
.+.++.|..+|||++|||...- ..+-.. ...+|+++ + ++|.||||+|||+-...+..++.++.+......
T Consensus 355 ~~aW~~l~~adGilvPGGFG~R----GveG~i-~Aak~ARe---n--~iP~LGiCLGmQ~AvIEfaRnvLg~~dAnStEF 424 (585)
T KOG2387|consen 355 HAAWQKLKSADGILVPGGFGDR----GVEGKI-LAAKWARE---N--KIPFLGICLGMQLAVIEFARNVLGLKDANSTEF 424 (585)
T ss_pred HHHHHHhccCCeEEeCCccccc----chhHHH-HHHHHHHh---c--CCCeEeeehhhhHHHHHHHHHhhCCCCCCcccc
Confidence 3467899999999999987632 221100 13455555 3 399999999999999999887655554433221
Q ss_pred ----eeec-eeecC------------CCCCcccccCCchhHHhhc-ccceEE--EeecceeecCCCccccc-cccceEEE
Q psy14047 189 ----NLAL-EFMPS------------FRQSLLYSRAPIHVLQELA-TSHITH--NWHMWCITPSNFTDNGL-AKEWKVLS 247 (350)
Q Consensus 189 ----~~~i-~~~~~------------~~~~~lf~~~~~~~~~~~~-~~~~v~--~~H~~~v~~~~~~~~~L-~~~~~vla 247 (350)
..|+ -+.+. +.....|..-. ....++. +...|- +.|.|.|.|.... .| ..|+...+
T Consensus 425 ~p~~~~~vVi~MPE~~~~~mGgtMRLG~R~t~f~~~~-s~~~kLYG~~~~V~ERHRHRyEVNP~~v~--~le~~Gl~FvG 501 (585)
T KOG2387|consen 425 DPETKNPVVIFMPEHNKTHMGGTMRLGSRRTVFQDKD-SKLRKLYGNVEFVDERHRHRYEVNPEMVK--QLEQAGLSFVG 501 (585)
T ss_pred CCCCCCcEEEECcCCCcccccceeeecccceeeecCc-hHHHHHhCCchhhhhhhhcceecCHHHHH--HHHhcCcEEEe
Confidence 1111 11111 11112233322 2223333 334454 4455555443221 23 35899999
Q ss_pred EeecCCCceEEEEEEcCCccEE-EEcccCCcCCccccccCCCCCch
Q psy14047 248 TNSNNRGLKFISSVEHKVYPFA-GIQFHPEKNAYEWKLTQDNPHTR 292 (350)
Q Consensus 248 ~s~~~~~~e~v~ai~~~~~~i~-gvQfHPE~~~~~~~~~~~~~h~~ 292 (350)
. +..+.. .+.+|.+++|+| |+|||||. .+++..|++.
T Consensus 502 k--d~~g~r-meI~El~~HP~fVg~QfHPE~-----~srp~kpsp~ 539 (585)
T KOG2387|consen 502 K--DVTGKR-MEIIELESHPFFVGVQFHPEF-----KSRPDKPSPL 539 (585)
T ss_pred e--cCCCcE-EEEEEcCCCCceeeeccCHHH-----hcCCCCCCcc
Confidence 8 444443 889999999976 99999994 4555556543
No 86
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.33 E-value=9.1e-12 Score=113.59 Aligned_cols=188 Identities=21% Similarity=0.163 Sum_probs=98.0
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE 112 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (350)
.+++++++++|+.+..++....... ...++.+|||+||||...-+ . .
T Consensus 13 ~~~~~al~~aG~~v~~v~~~~~~~~-~~~l~~~d~liipGG~~~~d--~----l-------------------------- 59 (238)
T cd01740 13 RDMAYAFELAGFEAEDVWHNDLLAG-RKDLDDYDGVVLPGGFSYGD--Y----L-------------------------- 59 (238)
T ss_pred HHHHHHHHHcCCCEEEEeccCCccc-cCCHhhCCEEEECCCCCccc--c----c--------------------------
Confidence 6788999999999999988643211 11256788888888862111 0 0
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH--hcCccccCCccCceee-e
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT--SNNENELRTRCDCFYE-N 189 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a--~Gg~v~~~~~~~~~~~-~ 189 (350)
+.+... ..+. .+.++++++.++| +||||||.|+|+|+.+ ++|.+. ......... .
T Consensus 60 ------------~~~~~~-~~~~------~~~~~l~~~~~~g--~pvlGIC~G~QlL~~~gll~g~~~-~~~~~~~~~~~ 117 (238)
T cd01740 60 ------------RAGAIA-AASP------LLMEEVKEFAERG--GLVLGICNGFQILVELGLLPGALI-RNKGLKFICRW 117 (238)
T ss_pred ------------cccccc-ccCh------hHHHHHHHHHhCC--CeEEEECcHHHHHHHcCCCccccc-cCCCCceeccc
Confidence 000000 0000 0456677777777 9999999999999997 777643 111111111 0
Q ss_pred --eeceeecCCCCCcccccC-CchhHHhhcccceEEEeecceeecCCCc-cccccccceEEEE-------------eecC
Q psy14047 190 --LALEFMPSFRQSLLYSRA-PIHVLQELATSHITHNWHMWCITPSNFT-DNGLAKEWKVLST-------------NSNN 252 (350)
Q Consensus 190 --~~i~~~~~~~~~~lf~~~-~~~~~~~~~~~~~v~~~H~~~v~~~~~~-~~~L~~~~~vla~-------------s~~~ 252 (350)
.-++.......+.+++.+ +.. ...++..|..+--..+-. ...|-+.-++.-. | ++
T Consensus 118 ~~~~v~~~v~~~~si~t~~~~~g~-------~l~~~vaHgeG~~~~~~~~~~~l~~~~~i~~y~~~~~~~~~~yp~N-Pn 189 (238)
T cd01740 118 QNRFVTLRVENNDSPFTKGYMEGE-------VLRIPVAHGEGRFYADDETLAELEENGQIAQYVDDDGNVTERYPAN-PN 189 (238)
T ss_pred cCceEEEEEcCCCCceecCCCCCC-------EEEEEeECCceeeEcCHHHHHHHHHCCCEEEEEcCCCCccccCCCC-CC
Confidence 001111112233333331 111 112444454321100000 0011111111101 1 23
Q ss_pred CCceEEEEEEcCCccEEEEcccCCcCCcccc
Q psy14047 253 RGLKFISSVEHKVYPFAGIQFHPEKNAYEWK 283 (350)
Q Consensus 253 ~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~ 283 (350)
+...-|++|..++++++|++.||||....|.
T Consensus 190 Gs~~~iAgi~~~~GrvlglMphPer~~~~~q 220 (238)
T cd01740 190 GSLDGIAGICNEDGRVLGMMPHPERAVEPWQ 220 (238)
T ss_pred CChhcceEEEcCCCCEEEEcCChHHcccccc
Confidence 3334599999999999999999999977654
No 87
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=99.32 E-value=2.1e-11 Score=111.82 Aligned_cols=102 Identities=25% Similarity=0.295 Sum_probs=58.9
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccc
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAK 85 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~ 85 (350)
||.++|+.-+.. + .+.+...+++.+|+.+..+....-.. -+..|+.+++|+||||-+--+.
T Consensus 1 kpkV~Vl~~pGt---N---------ce~e~~~A~~~aG~~~~~v~~~dl~~-~~~~l~~~~~lvipGGFS~gD~------ 61 (259)
T PF13507_consen 1 KPKVAVLRFPGT---N---------CERETAAAFENAGFEPEIVHINDLLS-GESDLDDFDGLVIPGGFSYGDY------ 61 (259)
T ss_dssp --EEEEEE-TTE---E---------EHHHHHHHHHCTT-EEEEEECCHHHT-TS--GCC-SEEEE-EE-GGGGT------
T ss_pred CCEEEEEECCCC---C---------CHHHHHHHHHHcCCCceEEEEEeccc-ccCchhhCcEEEECCccCcccc------
Confidence 688999988754 1 23667789999999999887642100 0124778888888888632220
Q ss_pred cceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHH---HHHHHHHHHHhhC-CCCccEEE
Q psy14047 86 AGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAG---AMIYKIAKEFNEN-RDYFPIMG 161 (350)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~---~~l~~~i~~~~~~-g~~~PIlG 161 (350)
+|++. -+.... ..+.+.++++.++ | +|+||
T Consensus 62 --------------------------------------l~sg~------~~a~~~~~~~~~~~~i~~f~~~~g--~~vLG 95 (259)
T PF13507_consen 62 --------------------------------------LRSGA------IAAARLLFNSPLMDAIREFLERPG--GFVLG 95 (259)
T ss_dssp --------------------------------------TSTTH------HHHHHHCCSCCCHHHHHHHHHCTT---EEEE
T ss_pred --------------------------------------chHHH------HHHHHhhccHHHHHHHHHHHhcCC--CeEEE
Confidence 01110 111100 0246777888877 6 99999
Q ss_pred ehHHHHHHHHH
Q psy14047 162 ICLGFQLLLYT 172 (350)
Q Consensus 162 IC~G~QlLa~a 172 (350)
||.|+|+|...
T Consensus 96 IcNGfQiL~~~ 106 (259)
T PF13507_consen 96 ICNGFQILVEL 106 (259)
T ss_dssp ECHHHHHHCCC
T ss_pred EchHhHHHHHh
Confidence 99999999975
No 88
>KOG3210|consensus
Probab=99.21 E-value=1e-10 Score=97.45 Aligned_cols=61 Identities=26% Similarity=0.331 Sum_probs=47.6
Q ss_pred HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCc
Q psy14047 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNE 176 (350)
Q Consensus 112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~ 176 (350)
+++++++|++|+|||.+.. +..+.... .|.+-+.++..++ .+|+||+|.||.+|...+.|.
T Consensus 51 ~~D~aq~DaLIIPGGEST~--mslia~~t-gL~d~L~~fVhn~-~k~~WGTCAGmI~LS~ql~ne 111 (226)
T KOG3210|consen 51 KNDLAQCDALIIPGGESTA--MSLIAERT-GLYDDLYAFVHNP-SKVTWGTCAGMIYLSQQLSNE 111 (226)
T ss_pred HHHHhhCCEEEecCCchhH--HHHHHhhh-hhHHHHHHHhcCC-CccceeechhhhhhhhhhcCC
Confidence 5678999999999999876 34443322 3777777888776 499999999999999887664
No 89
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.03 E-value=1.7e-08 Score=109.28 Aligned_cols=49 Identities=14% Similarity=-0.039 Sum_probs=34.2
Q ss_pred CCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047 252 NRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS 307 (350)
Q Consensus 252 ~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~ 307 (350)
++...-|++|...+++++|.+.||||....+... .+ -..++.||...++
T Consensus 1189 NGS~~~IaGi~s~dGrvlg~MpHpER~~~~~~~~----~~---g~~~~~iF~~~v~ 1237 (1239)
T TIGR01857 1189 NGSSLAIEGITSPDGRIFGKMGHSERYGDGLFKN----IP---GNKDQHLFASGVK 1237 (1239)
T ss_pred CCChhhhhEeECCCCCEEEECCCcccccCcccCC----CC---chhhhHHHHHHHh
Confidence 3333458999999999999999999986543321 11 1246888888774
No 90
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.83 E-value=1.3e-07 Score=104.04 Aligned_cols=28 Identities=14% Similarity=0.014 Sum_probs=24.7
Q ss_pred eEEEEEEcCCccEEEEcccCCcCCcccc
Q psy14047 256 KFISSVEHKVYPFAGIQFHPEKNAYEWK 283 (350)
Q Consensus 256 e~v~ai~~~~~~i~gvQfHPE~~~~~~~ 283 (350)
.-|++|...+++++|++.||||....|+
T Consensus 1237 ~~IaGi~s~dGrvlglMpHPEr~~~~~q 1264 (1290)
T PRK05297 1237 NGITGLTTADGRVTIMMPHPERVFRTVQ 1264 (1290)
T ss_pred hcceEeECCCCCEEEEcCChHHhcchhh
Confidence 3589999999999999999999987764
No 91
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.80 E-value=2.3e-08 Score=88.74 Aligned_cols=84 Identities=20% Similarity=0.327 Sum_probs=58.0
Q ss_pred ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhh
Q psy14047 28 KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQS 107 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (350)
.++.-...+++|+++|+.++.++...+.+ +..+|+|+||||...+.
T Consensus 9 F~f~y~e~~~~l~~~G~~v~~~s~~~~~~-----l~~~D~lilPGG~~~~~----------------------------- 54 (198)
T cd03130 9 FNFYYPENLELLEAAGAELVPFSPLKDEE-----LPDADGLYLGGGYPELF----------------------------- 54 (198)
T ss_pred cccccHHHHHHHHHCCCEEEEECCCCCCC-----CCCCCEEEECCCchHHH-----------------------------
Confidence 45555788899999999998887632211 33478888888752211
Q ss_pred hhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh
Q psy14047 108 LLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS 173 (350)
Q Consensus 108 ~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~ 173 (350)
.+.+.+. ..+.+.++++.++| +||+|||.|+|+|+..+
T Consensus 55 -------------------------~~~L~~~-~~~~~~i~~~~~~g--~pilgICgG~qlL~~~~ 92 (198)
T cd03130 55 -------------------------AEELSAN-QSMRESIRAFAESG--GPIYAECGGLMYLGESL 92 (198)
T ss_pred -------------------------HHHHHhh-HHHHHHHHHHHHcC--CCEEEEcccHHHHHHHh
Confidence 1222211 13677788888777 99999999999999876
No 92
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.78 E-value=1.2e-07 Score=103.69 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=37.9
Q ss_pred CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCC
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGG 74 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~ 74 (350)
.||.++|+.-+.. +. ..+...+++.+|+.+..+....-.+. ...|+.++||+++||-
T Consensus 1036 ~~pkVaVl~~pGt---N~---------~~e~~~Af~~aGf~~~~V~~~dl~~~-~~~L~~~~glv~pGGF 1092 (1307)
T PLN03206 1036 SKPKVAIIREEGS---NG---------DREMAAAFYAAGFEPWDVTMSDLLNG-RISLDDFRGIVFVGGF 1092 (1307)
T ss_pred CCCeEEEEECCCC---CC---------HHHHHHHHHHcCCceEEEEeeecccc-cccccceeEEEEcCcC
Confidence 5799999988864 11 25666789999999877776421111 1225677778888775
No 93
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.76 E-value=2.1e-07 Score=102.36 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=37.9
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCC
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGG 74 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~ 74 (350)
..+|.++|+.-+.. +. ..+...+++.+|+.+..+...+-... ..-|+.++||+++||-
T Consensus 1053 ~~~p~vail~~pG~---N~---------~~e~~~Af~~aGf~~~~v~~~dl~~~-~~~l~~~~~lv~~GGF 1110 (1310)
T TIGR01735 1053 GVRPKVAILREQGV---NG---------DREMAAAFDRAGFEAWDVHMSDLLAG-RVHLDEFRGLAACGGF 1110 (1310)
T ss_pred CCCceEEEEECCCC---CC---------HHHHHHHHHHhCCCcEEEEEeccccC-CcchhheeEEEEcCCC
Confidence 35789999988764 11 25566789999999888776431110 0025667888888885
No 94
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.70 E-value=1.4e-07 Score=93.76 Aligned_cols=26 Identities=38% Similarity=0.522 Sum_probs=20.9
Q ss_pred HHHHHHHHhhCCCCccEEEehHHHHHHHHHh
Q psy14047 143 IYKIAKEFNENRDYFPIMGICLGFQLLLYTS 173 (350)
Q Consensus 143 l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~ 173 (350)
|.+.++++ | +||||||.|||||+...
T Consensus 57 l~~~i~~~---g--~pvlGICgG~QmLg~~~ 82 (476)
T PRK06278 57 LKKEILNF---D--GYIIGICSGFQILSEKI 82 (476)
T ss_pred HHHHHHHc---C--CeEEEEcHHHHhccccc
Confidence 45555555 5 99999999999999875
No 95
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.58 E-value=1.8e-07 Score=82.73 Aligned_cols=78 Identities=19% Similarity=0.274 Sum_probs=55.1
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE 112 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (350)
.++.++++..|+.++.++...+ ++.+|+|+||||. +..
T Consensus 13 ~~l~~~~~~~G~~~~~~~~~~~-------~~~~d~lilpGg~-~~~---------------------------------- 50 (194)
T cd01750 13 TDLDPLAREPGVDVRYVEVPEG-------LGDADLIILPGSK-DTI---------------------------------- 50 (194)
T ss_pred HHHHHHHhcCCceEEEEeCCCC-------CCCCCEEEECCCc-chH----------------------------------
Confidence 5566788889999998887654 4577888888887 321
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhc
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN 174 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~G 174 (350)
.+....... .+.+.++++.++| +||||||.|+|+|+..+.
T Consensus 51 ------------------~~~~~~~~~--~~~~~i~~~~~~g--~pvlgiC~G~qlL~~~~~ 90 (194)
T cd01750 51 ------------------QDLAWLRKR--GLAEAIKNYARAG--GPVLGICGGYQMLGKYIV 90 (194)
T ss_pred ------------------HHHHHHHHc--CHHHHHHHHHHCC--CcEEEECHHHHHhhhhcc
Confidence 001111111 2566777777777 999999999999999874
No 96
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=98.49 E-value=2.2e-07 Score=80.30 Aligned_cols=112 Identities=12% Similarity=0.067 Sum_probs=69.6
Q ss_pred hccCCEEEeCCCCCCccc---chHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047 115 LGQVNGVLIPGGGASFYA---DDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA 191 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~---~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~ 191 (350)
..++||+|++|...-..+ .+.|... ..+++++++.. .|+||||.|+|+...+++|......+....+. .+
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~El-~~i~dwa~~~v-----~stl~iCWgaqaal~~~yGi~k~~~~~K~~Gv-f~ 132 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEEL-TEILDWAKTHV-----TSTLFSCWAAMAALYYFYGIKKHQLPEKIFGV-FP 132 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHHH-HHHHHHHHHhC-----cchHHHHHHHHHHHHHHcCcccccCCCceEEE-EE
Confidence 578999999997663322 2334443 36788888654 99999999999999999997432222222332 23
Q ss_pred ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEE
Q psy14047 192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLS 247 (350)
Q Consensus 192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla 247 (350)
.... ..++|++++++.+ .+-+.|...+..... .-.++++|+|
T Consensus 133 ~~~~---~~hpL~~g~~d~F--------~~PhSR~~~v~~~~~---~~~~~l~il~ 174 (175)
T cd03131 133 HTIL---EPHPLLRGLDDGF--------DVPHSRYAEVDREDI---EEAAGLTILA 174 (175)
T ss_pred eeec---CCCccccCCCCce--------eecCcccccCCHHHH---hhCCCCEEcc
Confidence 2221 1678888888765 355555555643221 1245666664
No 97
>PHA03366 FGAM-synthase; Provisional
Probab=98.47 E-value=2.7e-06 Score=93.80 Aligned_cols=58 Identities=21% Similarity=0.377 Sum_probs=39.8
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCc
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGA 75 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~ 75 (350)
..||.++|+.-+.. +. ..+...+++++|+.+..+....-... +.|+.++||+++||-+
T Consensus 1026 ~~~prVaIl~~pG~---N~---------~~e~~~Af~~aGf~~~~v~~~dL~~~--~~l~~f~glv~~GGFS 1083 (1304)
T PHA03366 1026 DKRHRVAVLLLPGC---PG---------PHALLAAFTNAGFDPYPVSIEELKDG--TFLDEFSGLVIGGSSG 1083 (1304)
T ss_pred CCCCeEEEEECCCC---CC---------HHHHHHHHHHcCCceEEEEeecCCCC--CccccceEEEEcCCCC
Confidence 45799999998864 21 25667889999999888876431100 1167788888888864
No 98
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=98.42 E-value=1.5e-06 Score=80.71 Aligned_cols=140 Identities=19% Similarity=0.087 Sum_probs=74.2
Q ss_pred ccCCEEEeCCCCCCc---ccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHH-HHHHhcCccccCCccCceeeeee
Q psy14047 116 GQVNGVLIPGGGASF---YADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQL-LLYTSNNENELRTRCDCFYENLA 191 (350)
Q Consensus 116 ~~~dgvIipG~g~~~---~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~Ql-La~a~Gg~v~~~~~~~~~~~~~~ 191 (350)
+.+||+|++|..--. .+.+.|.+.. .+++++++.. .+.|.||.|.|. |....|-.-..+. ....| ..+
T Consensus 97 ~~~DglIITGAPvE~l~Fe~V~YW~El~-~i~dwa~~~v-----~stl~iCWgAqAaLy~~yGI~K~~l~-~KlfG-Vf~ 168 (298)
T PF04204_consen 97 RKFDGLIITGAPVEQLPFEEVDYWDELT-EIFDWAKTHV-----TSTLFICWGAQAALYHFYGIPKYPLP-EKLFG-VFE 168 (298)
T ss_dssp S-EEEEEE---TTTTS-GGGSTTHHHHH-HHHHHHHHHE-----EEEEEETHHHHHHHHHHH----EEEE-EEEEE-EEE
T ss_pred CCCCEEEEeCCCcCCCCcccCCcHHHHH-HHHHHHHHcC-----CcchhhhHHHHHHHHHHcCCCcccCC-Cccee-cee
Confidence 479999999964432 2234555443 6889999876 999999999999 5555554421111 11122 122
Q ss_pred ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047 192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI 271 (350)
Q Consensus 192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv 271 (350)
... ....++|++++++.+ .+-+.-.-.+..+.+ .-.++++|+|.| ++.+ +..+..++++.+=+
T Consensus 169 ~~~--~~~~~pLl~Gfdd~f--------~~PhSR~t~i~~~~i---~~~~~L~vLa~s-~~~G---~~l~~~~d~r~vfi 231 (298)
T PF04204_consen 169 HRV--LDPDHPLLRGFDDTF--------FAPHSRYTEIDRDDI---KKAPGLEVLAES-EEAG---VFLVASKDGRQVFI 231 (298)
T ss_dssp EEE--S-SS-GGGTT--SEE--------EEEEEEEEE--HHHH---CT-TTEEEEEEE-TTTE---EEEEEECCCTEEEE
T ss_pred eec--cCCCChhhcCCCccc--------cCCcccccCCCHHHH---hcCCCcEEEecc-CCcc---eEEEEcCCCCEEEE
Confidence 221 224678888887654 222222223332211 236789999998 6666 66677677788889
Q ss_pred cccCCcCCc
Q psy14047 272 QFHPEKNAY 280 (350)
Q Consensus 272 QfHPE~~~~ 280 (350)
|.|||+...
T Consensus 232 ~GH~EYd~~ 240 (298)
T PF04204_consen 232 TGHPEYDAD 240 (298)
T ss_dssp -S-TT--TT
T ss_pred eCCCccChh
Confidence 999997753
No 99
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=98.40 E-value=1.8e-06 Score=73.72 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=44.8
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhc
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN 174 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~G 174 (350)
+++.++|+|+|||+.....+....... .+.+.++++.++| +||+|+|-|+|+|...+-
T Consensus 3 ~~~~~~D~i~lpGg~pe~~~~~l~~~~--~~~~~I~~~~~~G--~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 3 ELPPDADGIYLPGGYPELFALELSRNR--GLKEAIREAAEAG--GPIYAECGGYQYLGESII 60 (158)
T ss_pred CCCCCCCEEEECCCcHHHHHHHHHHHh--CHHHHHHHHHHcC--CcEEEEchHHHHHHHHHh
Confidence 457789999999987654332222222 4778899999998 999999999999998875
No 100
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.36 E-value=1.3e-05 Score=88.22 Aligned_cols=58 Identities=17% Similarity=0.259 Sum_probs=39.6
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCc
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGA 75 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~ 75 (350)
..||.|+|+.-+.. +. ..+...+++++|+.+..+...+-... +.|+.++||+++||-+
T Consensus 927 ~~~p~VaIl~~pG~---N~---------~~e~~~Af~~aGf~~~~v~~~dl~~~--~~l~~f~glv~~Ggfs 984 (1202)
T TIGR01739 927 DPRHQVAVLLLPGQ---SV---------PHGLLAALTNAGFDPRIVSITELKKT--DFLDTFSGLIIGGASG 984 (1202)
T ss_pred CCCCeEEEEeCCCC---CC---------HHHHHHHHHHcCCceEEEEeccCCCC--CchhheEEEEEcCcCC
Confidence 35788999988764 11 25667889999999888876431110 1256788999988763
No 101
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.25 E-value=4.5e-06 Score=83.18 Aligned_cols=79 Identities=22% Similarity=0.344 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE 112 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (350)
...++.|++.|+.++.++...+.+ +..+|+|+||||...+.
T Consensus 260 ~~~~~~L~~~g~~~~~~~~~~d~~-----l~~~d~l~ipGG~~~~~---------------------------------- 300 (449)
T TIGR00379 260 QDNLDALTHNAAELVPFSPLEDTE-----LPDVDAVYIGGGFPELF---------------------------------- 300 (449)
T ss_pred HHHHHHHHHCCCEEEEECCccCCC-----CCCCCEEEeCCcHHHHH----------------------------------
Confidence 788899999999999987643221 45789999999873221
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS 173 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~ 173 (350)
...+... ..+.+.++++.++| +||+|+|.|+|+|+..+
T Consensus 301 --------------------~~~l~~~-~~~~~~i~~~~~~G--~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 301 --------------------AEELSQN-QALRDSIKTFIHQG--LPIYGECGGLMYLSQSL 338 (449)
T ss_pred --------------------HHHHHhh-hHHHHHHHHHHHcC--CCEEEEcHHHHHHHhhh
Confidence 0112110 13677788888888 99999999999999887
No 102
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.18 E-value=7.8e-06 Score=81.54 Aligned_cols=95 Identities=17% Similarity=0.205 Sum_probs=63.3
Q ss_pred CEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCccccc
Q psy14047 7 PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKA 86 (350)
Q Consensus 7 p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~ 86 (350)
+.|||.--+. ..+--...++.|++.|+.++.++...+.+ +..+|+|+||||...+.
T Consensus 246 ~~iava~d~a-----------f~f~y~e~~~~L~~~g~~~~~~~~~~~~~-----l~~~D~lilpGG~~~~~-------- 301 (451)
T PRK01077 246 VRIAVARDAA-----------FNFYYPENLELLRAAGAELVFFSPLADEA-----LPDCDGLYLGGGYPELF-------- 301 (451)
T ss_pred ceEEEEecCc-----------ccccHHHHHHHHHHCCCEEEEeCCcCCCC-----CCCCCEEEeCCCchhhH--------
Confidence 5788876541 12223667789999999998887533221 45789999999863221
Q ss_pred ceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHH
Q psy14047 87 GAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGF 166 (350)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~ 166 (350)
. ..+... ..+.+.++++.++| +||+|||.|+
T Consensus 302 -------------~---------------------------------~~l~~~-~~~~~~i~~~~~~g--~~i~aiCgG~ 332 (451)
T PRK01077 302 -------------A---------------------------------AELAAN-TSMRASIRAAAAAG--KPIYAECGGL 332 (451)
T ss_pred -------------H---------------------------------HHHhhC-chhHHHHHHHHHcC--CCEEEEcHHH
Confidence 0 001000 02567778888787 9999999999
Q ss_pred HHHHHHhc
Q psy14047 167 QLLLYTSN 174 (350)
Q Consensus 167 QlLa~a~G 174 (350)
|+|+..+-
T Consensus 333 ~~L~~~i~ 340 (451)
T PRK01077 333 MYLGESLE 340 (451)
T ss_pred HHHHhhhc
Confidence 99999873
No 103
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=98.15 E-value=9.7e-06 Score=72.66 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=43.4
Q ss_pred HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
+.+.+.++|+|++|| |++...+..|.... +.+.++++.++| +|++|||.|+|++...
T Consensus 74 ~~~~l~~ad~I~l~G-G~~~~~~~~l~~~~--l~~~l~~~~~~g--~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 74 PLDALLEADVIYVGG-GNTFNLLAQWREHG--LDAILKAALERG--VVYIGWSAGSNCWFPS 130 (212)
T ss_pred HHHHHhcCCEEEECC-chHHHHHHHHHHcC--HHHHHHHHHHCC--CEEEEECHhHHhhCCC
Confidence 456777888888888 56555566666543 677777777777 9999999999999974
No 104
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=98.13 E-value=1.2e-05 Score=74.20 Aligned_cols=139 Identities=16% Similarity=0.097 Sum_probs=83.1
Q ss_pred ccCCEEEeCCCCCCc---ccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047 116 GQVNGVLIPGGGASF---YADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL 192 (350)
Q Consensus 116 ~~~dgvIipG~g~~~---~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i 192 (350)
..+||+|++|-.--. .+.+.|.+.. .+++|+++.. ...|.||.|.|.....+=|--.........| ..+.
T Consensus 98 ~~fDGlIITGAPvE~l~FeeV~YW~El~-~I~dwsk~~v-----~Stl~iCWaAqAaLy~~yGI~K~~l~~KlfG-Vf~h 170 (300)
T TIGR01001 98 RKFDGLIITGAPVELVPFEDVAYWEELT-EIMEWSKHNV-----TSTMFICWAAQAGLKYFYGIPKYTLPEKLSG-VYKH 170 (300)
T ss_pred CCCCEEEEcCCCcCCCCcccCCcHHHHH-HHHHHHHHcC-----cchHHHHHHHHHHHHHHcCCCccccCCceEE-eecC
Confidence 689999999954332 2234555443 6888888866 8999999999996665544211111112222 2232
Q ss_pred eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047 193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ 272 (350)
Q Consensus 193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ 272 (350)
..+ ..++|++++.+.+. .-.+.|. .+....+ .-.++++|+|.| ++.+ +..+..++.+-+=++
T Consensus 171 ~~~---~~~pL~rGfdd~f~-------~PhSR~t-~i~~~~i---~~~~~L~vla~s-~e~G---~~l~~s~d~r~vfi~ 232 (300)
T TIGR01001 171 DIA---PDSLLLRGFDDFFL-------APHSRYA-DFDAEDI---DKVTDLEILAES-DEAG---VYLAANKDERNIFVT 232 (300)
T ss_pred ccC---CCCccccCCCCccc-------cCCCCCC-CCCHHHH---hcCCCCeEEecC-CCcc---eEEEEcCCCCEEEEc
Confidence 211 45788888876542 1122222 2322211 223689999997 5566 556666666666699
Q ss_pred ccCCcCC
Q psy14047 273 FHPEKNA 279 (350)
Q Consensus 273 fHPE~~~ 279 (350)
.|||...
T Consensus 233 GH~EYd~ 239 (300)
T TIGR01001 233 GHPEYDA 239 (300)
T ss_pred CCCccCh
Confidence 9999764
No 105
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=98.10 E-value=7.3e-06 Score=80.78 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=59.2
Q ss_pred ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhh
Q psy14047 28 KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQS 107 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (350)
.+|...+.++.|+++ +.++.++.-.+.+ +..+|+|+|+||...+.
T Consensus 244 F~FyY~enl~~L~~~-aelv~fSPl~~~~-----lp~~D~l~lpGG~~e~~----------------------------- 288 (433)
T PRK13896 244 FCFRYPATIERLRER-ADVVTFSPVAGDP-----LPDCDGVYLPGGYPELH----------------------------- 288 (433)
T ss_pred cceeCHHHHHHHHhc-CcEEEEcCCCCCC-----CCCCCEEEeCCCchhhH-----------------------------
Confidence 455668899999999 9999988854432 45789999999873321
Q ss_pred hhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh
Q psy14047 108 LLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS 173 (350)
Q Consensus 108 ~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~ 173 (350)
...+... ..++.++++.++| +||+|+|.|+|+|+..+
T Consensus 289 -------------------------~~~L~~n--~~~~~i~~~~~~G--~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 289 -------------------------ADALADS--PALDELADRAADG--LPVLGECGGLMALAESL 325 (433)
T ss_pred -------------------------HHHHHhC--CcHHHHHHHHHCC--CcEEEEehHHHHhhccc
Confidence 0112111 1336677777788 99999999999999876
No 106
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=98.06 E-value=2.9e-06 Score=84.98 Aligned_cols=59 Identities=20% Similarity=0.334 Sum_probs=45.0
Q ss_pred HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh
Q psy14047 111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS 173 (350)
Q Consensus 111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~ 173 (350)
+++.|.++|+||+||+.....+...+... .+.+.++++.++| .||+|||.|||+|...+
T Consensus 278 ~~~~l~~~d~lilpGg~~~~~~~~~l~~~--~~~~~i~~~~~~G--~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 278 LDDSLTGCDAVIIPGSKSTIADLYALKQS--GFAEEILDFAKEG--GIVIGICGGYQMLGKEL 336 (475)
T ss_pred CccccccCCEEEECCcchHHHHHHHHHhc--ChHHHHHHHHHcC--CcEEEEcHHHHHhhhhh
Confidence 34467799999999999765443322322 3677788888888 99999999999999875
No 107
>PRK00784 cobyric acid synthase; Provisional
Probab=98.03 E-value=4.9e-06 Score=83.78 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=44.3
Q ss_pred HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh
Q psy14047 114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS 173 (350)
Q Consensus 114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~ 173 (350)
.+..+|+||+||++....+....... .+.+.++++.++| +||||||.|+|+|+..+
T Consensus 287 ~l~~~d~lilpGg~~~~~~~~~~~~~--~l~~~i~~~~~~g--~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 287 PLPDADLVILPGSKNTIADLAWLRES--GWDEAIRAHARRG--GPVLGICGGYQMLGRRI 342 (488)
T ss_pred ccccCCEEEECCccchHHHHHHHHHc--CHHHHHHHHHHcC--CeEEEECHHHHHHhhhc
Confidence 56789999999999765533322222 3778888888888 99999999999999987
No 108
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=97.98 E-value=6.1e-05 Score=74.16 Aligned_cols=58 Identities=21% Similarity=0.311 Sum_probs=44.9
Q ss_pred HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh
Q psy14047 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS 173 (350)
Q Consensus 112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~ 173 (350)
.+.|.++|.||+||+.+...+...+++.+ +.+.++++..++ .||+|||-|||+|...+
T Consensus 285 ~~~l~~~dlvIlPGsk~t~~DL~~lr~~g--~d~~i~~~~~~~--~~viGICGG~QmLG~~i 342 (486)
T COG1492 285 GSDLRDADLVILPGSKNTIADLKILREGG--MDEKILEYARKG--GDVIGICGGYQMLGRRL 342 (486)
T ss_pred CCCCCCCCEEEeCCCcccHHHHHHHHHcC--HHHHHHHHHhCC--CCEEEEcchHHhhhhhh
Confidence 35677799999999998766555555443 556677777666 89999999999999874
No 109
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.91 E-value=7.9e-06 Score=65.51 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=37.9
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHH
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLL 169 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlL 169 (350)
.++|.||+|| |+....+..+... . .+.++++.++| +|+||||+|.=+.
T Consensus 43 ~~ad~lVlPG-Ga~~~~~~~L~~~--g-~~~i~~~v~~g--~p~LGIClGAy~a 90 (114)
T cd03144 43 SKTALLVVPG-GADLPYCRALNGK--G-NRRIRNFVRNG--GNYLGICAGAYLA 90 (114)
T ss_pred hCCCEEEECC-CChHHHHHHHHhh--C-cHHHHHHHHCC--CcEEEEecCccce
Confidence 5899999999 8877666666553 2 67788888777 9999999997665
No 110
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=97.57 E-value=0.00037 Score=63.20 Aligned_cols=30 Identities=20% Similarity=0.166 Sum_probs=25.3
Q ss_pred HHHHHHHHhhCCCCccEEEehHHHHHHHHHhc
Q psy14047 143 IYKIAKEFNENRDYFPIMGICLGFQLLLYTSN 174 (350)
Q Consensus 143 l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~G 174 (350)
+.+.++++.++| +|++|+|.|+-+++....
T Consensus 102 l~~~l~~~~~~G--~~~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 102 LLAPIREAVKNG--TPYIGWSAGANVAGPTIR 131 (233)
T ss_pred cHHHHHHHHHCC--CEEEEECHHHHhhhccce
Confidence 777788888888 999999999988876544
No 111
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.48 E-value=0.00023 Score=54.73 Aligned_cols=25 Identities=44% Similarity=0.781 Sum_probs=21.0
Q ss_pred HHHHHHHHhhCCCCccEEEehHHHHHH
Q psy14047 143 IYKIAKEFNENRDYFPIMGICLGFQLL 169 (350)
Q Consensus 143 l~~~i~~~~~~g~~~PIlGIC~G~QlL 169 (350)
+.+++++...++ +|++|+|.|+|++
T Consensus 68 ~~~~i~~~~~~~--~~i~~~c~g~~~l 92 (115)
T cd01653 68 LLALLREAAAAG--KPILGICLGAQLL 92 (115)
T ss_pred HHHHHHHHHHcC--CEEEEECchhHhH
Confidence 566777777665 9999999999999
No 112
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.24 E-value=0.00028 Score=51.80 Aligned_cols=49 Identities=31% Similarity=0.619 Sum_probs=35.4
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHH
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLL 169 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlL 169 (350)
...+|+||+||++....... .. ..+.+++.++.+++ +|++|+|.|+|++
T Consensus 44 ~~~~~~lii~g~~~~~~~~~-~~---~~~~~~~~~~~~~~--~~i~~~~~g~~~~ 92 (92)
T cd03128 44 LDDYDGLILPGGPGTPDDLA-WD---EALLALLREAAAAG--KPVLGICLGAQLL 92 (92)
T ss_pred cccCCEEEECCCCcchhhhc-cC---HHHHHHHHHHHHcC--CEEEEEecccccC
Confidence 45689999999887654332 11 13667777777666 9999999999864
No 113
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=97.11 E-value=0.0031 Score=56.32 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=35.0
Q ss_pred HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
+.+.|.++|+|+++||.. ....+.|... .+.+.+++...+| .|+.|+|.|..++...
T Consensus 74 ~~~~l~~ad~I~~~GG~~-~~~~~~l~~t--~~~~~i~~~~~~G--~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 74 VVARLLEADGIFVGGGNQ-LRLLSVLRET--PLLDAILKRVARG--VVIGGTSAGAAVMGET 130 (210)
T ss_pred HHHHHhhCCEEEEcCCcH-HHHHHHHHhC--ChHHHHHHHHHcC--CeEEEcCHHHHHhhhc
Confidence 344555555555555322 1112334332 2556666666677 9999999999999975
No 114
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=97.05 E-value=0.00096 Score=59.72 Aligned_cols=58 Identities=19% Similarity=0.359 Sum_probs=41.3
Q ss_pred hccCCEEEeCCCCCCcccchHHH------HHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhc
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYA------KAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN 174 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~------~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~G 174 (350)
+++||+|++|||.........|. +....+.++++++.++| +||.+||.|-++|+.+.+
T Consensus 80 ~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~g--K~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 80 AADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAG--KPIGAICIAPALAAKILG 143 (213)
T ss_pred HhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCC--CeEEEECHHHHHHHHHhc
Confidence 56899999999955321111111 01124788889999888 999999999999998754
No 115
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=96.95 E-value=0.0014 Score=58.96 Aligned_cols=57 Identities=16% Similarity=0.301 Sum_probs=40.5
Q ss_pred hccCCEEEeCCCCCCcccchHH------HHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh
Q psy14047 115 LGQVNGVLIPGGGASFYADDGY------AKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS 173 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~------~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~ 173 (350)
.++||+|++|||.........+ .+....+.++++++.++| +||.+||.|-++|+.++
T Consensus 83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~g--K~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAG--KPIGFICIAPAMLPKIL 145 (217)
T ss_pred hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCC--CEEEEECHHHHHHHHHh
Confidence 5689999999995432101010 011124778889999888 99999999999998875
No 116
>KOG1907|consensus
Probab=96.89 E-value=0.0091 Score=62.28 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=37.7
Q ss_pred CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCC
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGG 74 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~ 74 (350)
.+|.++|+--... ++ ......++.++|..++-+..+.-.. =+.-|+++.||.++||-
T Consensus 1057 ~~PkVAilREeGv---Ng---------~rEMa~af~~AgF~~~DVtmtDlL~-G~~~ld~frGlaf~GGF 1113 (1320)
T KOG1907|consen 1057 TAPKVAILREEGV---NG---------DREMAAAFYAAGFETVDVTMTDLLA-GRHHLDDFRGLAFCGGF 1113 (1320)
T ss_pred CCCceEEeecccc---cc---------HHHHHHHHHHcCCceeeeeeehhhc-CceeHhHhcceeeecCc
Confidence 3788888865432 22 1556678899999988776542111 02247888999999986
No 117
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=96.80 E-value=0.0046 Score=55.75 Aligned_cols=140 Identities=16% Similarity=0.136 Sum_probs=80.3
Q ss_pred ccCCEEEeCCCCCCc---ccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCcccc-CCccCceeeeee
Q psy14047 116 GQVNGVLIPGGGASF---YADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENEL-RTRCDCFYENLA 191 (350)
Q Consensus 116 ~~~dgvIipG~g~~~---~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~-~~~~~~~~~~~~ 191 (350)
.++||+|++|-..-. .+-+.|.... .+++|.+..+ .-.|=||.|.|.--..+=|--.. +.. ...+ ..+
T Consensus 98 ~~FDG~IiTGAPve~l~feeV~YW~el~-~I~eWskt~V-----~STl~ICWgaqAaly~~yGv~K~~l~~-Kl~G-Vy~ 169 (307)
T COG1897 98 QKFDGLIITGAPVELLPFEEVAYWEELK-QIFEWSKTHV-----TSTLHICWGAQAALYYFYGVPKYTLPE-KLSG-VYK 169 (307)
T ss_pred cccCceEEeCCcccccCchhhhhHHHHH-HHHHHHhhcc-----hhhhhhHHHHHHHHHHHcCCCccccch-hhhc-eee
Confidence 479999999954322 2234555442 6788888766 66799999999988877663111 111 1111 122
Q ss_pred ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047 192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI 271 (350)
Q Consensus 192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv 271 (350)
.. .....+.++.++.+.+. .-.+.|.+ +....+ .--++++||+.| +..+ +..+..++.+-.=+
T Consensus 170 h~--~l~p~~~l~rGfdd~f~-------~PhSR~t~-~~~e~i---~~~~~LeIL~es-~e~G---~~l~a~k~~r~ifv 232 (307)
T COG1897 170 HD--ILSPHSLLTRGFDDSFL-------APHSRYTD-VPKEDI---LAVPDLEILAES-KEAG---VYLLASKDGRNIFV 232 (307)
T ss_pred cc--ccCccchhhccCCcccc-------Cccccccc-CCHHHH---hhCCCceeeecc-cccc---eEEEecCCCCeEEE
Confidence 11 12345677877776542 11222221 221111 112469999998 5555 55666666666667
Q ss_pred cccCCcCCc
Q psy14047 272 QFHPEKNAY 280 (350)
Q Consensus 272 QfHPE~~~~ 280 (350)
-.|||....
T Consensus 233 ~gH~EYD~~ 241 (307)
T COG1897 233 TGHPEYDAT 241 (307)
T ss_pred eCCcchhhh
Confidence 889997643
No 118
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.69 E-value=0.0025 Score=55.37 Aligned_cols=50 Identities=30% Similarity=0.555 Sum_probs=36.9
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
..+|+|++|||..... +.. ...+.++++++.+++ +||.|||.|.++|+.+
T Consensus 75 ~~~D~liv~GG~~~~~----~~~-~~~~~~~l~~~~~~~--k~i~~ic~G~~~La~a 124 (180)
T cd03169 75 DDYDALVIPGGRAPEY----LRL-DEKVLAIVRHFAEAN--KPVAAICHGPQILAAA 124 (180)
T ss_pred hHCCEEEEcCCCChhh----hcc-CHHHHHHHHHHHHcC--CEEEEECcHHHHHHHc
Confidence 3689999999854321 110 013677888888777 9999999999999986
No 119
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=96.65 E-value=0.0026 Score=57.76 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=39.7
Q ss_pred HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
..++||+|++|||.....+... . ..+.++++++.++| +||-.||.|-++|..+
T Consensus 91 ~~~dYDav~iPGG~g~~~dl~~--~--~~l~~ll~~f~~~g--K~iaAIChgp~~L~~a 143 (231)
T cd03147 91 NPDDYGIFFVAGGHGTLFDFPH--A--TNLQKIAQQIYANG--GVVAAVCHGPAILANL 143 (231)
T ss_pred CHhhCcEEEECCCCchhhhccc--C--HHHHHHHHHHHHcC--CEEEEEChHHHHHHhh
Confidence 3578999999999543221111 1 13678888888887 9999999999999876
No 120
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=96.58 E-value=0.076 Score=51.34 Aligned_cols=51 Identities=22% Similarity=0.293 Sum_probs=35.0
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHH
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLY 171 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~ 171 (350)
...++.+|+|||....+. ..+.. .-.+.|++++++| .--||||.|.-.-..
T Consensus 47 ~~~~~LlV~PGG~d~~y~-~~l~~---~g~~~Ir~fV~~G--G~YlGiCAGaY~as~ 97 (367)
T PF09825_consen 47 QSKCALLVMPGGADLPYC-RSLNG---EGNRRIRQFVENG--GGYLGICAGAYYASS 97 (367)
T ss_pred ccCCcEEEECCCcchHHH-HhhCh---HHHHHHHHHHHcC--CcEEEECcchhhhcc
Confidence 357899999997653221 12211 2357789999998 899999999665543
No 121
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=96.58 E-value=0.003 Score=55.23 Aligned_cols=51 Identities=24% Similarity=0.475 Sum_probs=40.3
Q ss_pred hccCCEEEeCCC-CCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 115 LGQVNGVLIPGG-GASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~-g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
.+.||+|++||| ..+...... . .+.++++++.++| +||..||.|-++|+.+
T Consensus 64 ~~~ydal~ipGG~~~~~~~~~~-~----~~~~~v~~~~~~~--k~vaaIC~g~~~L~~a 115 (188)
T COG0693 64 AADYDALVIPGGDHGPEYLRPD-P----DLLAFVRDFYANG--KPVAAICHGPAVLAAA 115 (188)
T ss_pred HhHCCEEEECCCccchhhccCc-H----HHHHHHHHHHHcC--CEEEEEChhHHHHhcc
Confidence 468999999999 554332222 1 4789999999888 9999999999999976
No 122
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=96.53 E-value=0.0037 Score=53.33 Aligned_cols=50 Identities=30% Similarity=0.499 Sum_probs=36.7
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
..+|+|++||+.... .+.. ...+.++++++.+++ +||.|||.|.++|+.+
T Consensus 59 ~~~D~vvv~Gg~~~~----~~~~-~~~l~~~l~~~~~~~--~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 59 EEYDALVIPGGRAPE----YLRL-NNKAVRLVREFVEKG--KPVAAICHGPQLLISA 108 (166)
T ss_pred HHCcEEEECCCCCHH----Hhcc-CHHHHHHHHHHHHcC--CEEEEEChHHHHHHhc
Confidence 368999999975421 1111 013778888888777 9999999999999975
No 123
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=96.42 E-value=0.0046 Score=52.67 Aligned_cols=50 Identities=22% Similarity=0.418 Sum_probs=37.0
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
..+|+|++||+.... .+.. ...+.++++++.+++ +||.|||.|.++|+.+
T Consensus 61 ~~~D~lvvpGG~~~~----~~~~-~~~~~~~l~~~~~~~--~~i~~ic~G~~~La~a 110 (165)
T cd03134 61 DDYDALVIPGGTNPD----KLRR-DPDAVAFVRAFAEAG--KPVAAICHGPWVLISA 110 (165)
T ss_pred HHCCEEEECCCCChh----hhcc-CHHHHHHHHHHHHcC--CeEEEEchHHHHHHhc
Confidence 368999999986321 1111 013778888888887 9999999999999875
No 124
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=96.36 E-value=0.0023 Score=53.75 Aligned_cols=52 Identities=27% Similarity=0.494 Sum_probs=36.5
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
..||+||+|||.... ..+......+.++++++.+++ +||.+||.|-.+|+.+
T Consensus 36 ~~yDalilpGG~~~~---~~l~~~~~~l~~~~~~~~~~~--k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 36 SDYDALILPGGHGGA---DDLRTDSKDLLELLKEFYEAG--KPIAAICHGPAVLAAA 87 (147)
T ss_dssp GGESEEEEE-BTHHH---HHHTTCHHHHHHHHHHHHHTT---EEEEETTCHHHHHHT
T ss_pred hhCCEEEECCCCchh---hhHhhHHHHHHHHHHHHHHcC--CeEEecCCCcchhhcc
Confidence 469999999986532 122200124788899998887 9999999999888876
No 125
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=96.36 E-value=0.011 Score=52.16 Aligned_cols=39 Identities=28% Similarity=0.251 Sum_probs=28.0
Q ss_pred HHHHHHHhhCCCCccEEEehHHHHHHHHHh----cCccccCCccC
Q psy14047 144 YKIAKEFNENRDYFPIMGICLGFQLLLYTS----NNENELRTRCD 184 (350)
Q Consensus 144 ~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~----Gg~v~~~~~~~ 184 (350)
.+.+++++++| +|+|.||.|+|+|...+ |-++.++...+
T Consensus 77 ~~~l~~~i~~g--~p~laiCgg~QlLG~yY~~a~G~ri~GlGiLd 119 (250)
T COG3442 77 KEGLKDAIENG--KPVLAICGGYQLLGQYYETASGTRIDGLGILD 119 (250)
T ss_pred cHHHHHHHhcC--CcEEEEccchhhccceeecCCCcEeeccccee
Confidence 34567777777 99999999999999754 44455444443
No 126
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=96.31 E-value=0.005 Score=55.50 Aligned_cols=52 Identities=23% Similarity=0.435 Sum_probs=38.8
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
++.||+|++||+.........-. .+.++++++.+++ ++|.+||.|-.+|+.+
T Consensus 88 ~~~~dal~ipGG~~~~~~l~~~~----~l~~~l~~~~~~~--k~iaaIC~g~~~La~a 139 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFDLPDNP----DLQDLLREFYENG--KVVAAVCHGPAALLNV 139 (221)
T ss_pred HhHceEEEECCCcccccccccCH----HHHHHHHHHHHcC--CEEEEEcchHHHHHhc
Confidence 46799999999754322111111 3778888888887 9999999999999986
No 127
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.16 E-value=0.01 Score=51.04 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=37.5
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
..+|.|++||+.......+ . .+.++++++.+++ ++|.+||-|.++|+.+
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~--~----~l~~~l~~~~~~~--~~i~aic~G~~~La~a 107 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEA--P----DLAGLVRQALKQG--KPVAAICGATLALARA 107 (170)
T ss_pred hHccEEEEcCCcccccCCc--H----HHHHHHHHHHHcC--CEEEEEChHHHHHHHC
Confidence 4689999999864322111 1 3678888888877 9999999999999985
No 128
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=96.14 E-value=0.017 Score=48.91 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCeEEEEecCC-CHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047 33 ASYVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI 111 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (350)
..+.+++++.|..+..|.... +.+...+.+...|+|+|+||...- .
T Consensus 3 ~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~--------------------l------------- 49 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDTFR--------------------L------------- 49 (154)
T ss_dssp HHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-HHH--------------------H-------------
T ss_pred HHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCHHH--------------------H-------------
Confidence 467889999999988888876 455677778899999999996321 0
Q ss_pred HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHH
Q psy14047 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLL 169 (350)
Q Consensus 112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlL 169 (350)
...|..+ .+.+.+++..++| .++.|+-.|.-++
T Consensus 50 ---------------------~~~l~~t--~l~~~i~~~~~~G--~vi~G~SAGA~i~ 82 (154)
T PF03575_consen 50 ---------------------LRQLKET--GLDEAIREAYRKG--GVIIGTSAGAMIL 82 (154)
T ss_dssp ---------------------HHHHHHT--THHHHHHHHHHTT--SEEEEETHHHHCT
T ss_pred ---------------------HHHHHhC--CHHHHHHHHHHCC--CEEEEEChHHhhc
Confidence 2234433 3777888888888 9999999998553
No 129
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=95.98 E-value=0.013 Score=51.41 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=38.8
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
..++|.|++||++..... +.+.. ...+.++++++.+++ ++|.+||.|..+|+.+
T Consensus 67 ~~~~D~liIpgg~~~~~~-~~~~~-~~~l~~~l~~~~~~~--~~i~aic~G~~~La~a 120 (195)
T cd03138 67 VPAPDLVIVPGLGGDPDE-LLLAD-NPALIAWLRRQHANG--ATVAAACTGVFLLAEA 120 (195)
T ss_pred cCCCCEEEECCCcCCchh-hhhhc-cHHHHHHHHHHHHcC--CEEEEecHHHHHHHHc
Confidence 457999999997653210 01111 124788889888887 9999999999999975
No 130
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=95.93 E-value=0.011 Score=53.77 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=38.3
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
.++||+|++|||..... .+... ..+.+.++++.++| +||-.||.|-++|..+
T Consensus 94 ~~dYDav~iPGG~g~~~---dl~~~-~~l~~ll~~f~~~g--K~VaAICHGp~~L~~a 145 (232)
T cd03148 94 DSEYAAVFIPGGHGALI---GIPES-QDVAAALQWAIKND--RFVITLCHGPAAFLAA 145 (232)
T ss_pred hhhceEEEECCCCCChh---hcccC-HHHHHHHHHHHHcC--CEEEEECcHHHHHHhc
Confidence 56899999999854422 22111 13677888888888 9999999999877754
No 131
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=95.89 E-value=0.018 Score=50.15 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=38.8
Q ss_pred HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
.+..+|.|++||+....... .. ..+.++++++.+++ ++|.+||-|..+|+.+
T Consensus 61 ~~~~~D~liipGg~~~~~~~-~~----~~l~~~l~~~~~~~--~~i~aic~g~~~La~a 112 (187)
T cd03137 61 ALAAADTVIVPGGPDVDGRP-PP----PALLAALRRAAARG--ARVASVCTGAFVLAEA 112 (187)
T ss_pred ccCCCCEEEECCCccccccc-CC----HHHHHHHHHHHhcC--CEEEEECHHHHHHHHc
Confidence 35678999999975543111 11 14778888888777 9999999999999986
No 132
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=95.89 E-value=0.01 Score=49.28 Aligned_cols=50 Identities=22% Similarity=0.326 Sum_probs=36.6
Q ss_pred cCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 117 QVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 117 ~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
.+|+||+||+..... .+.. ...+.++++++.+++ +||.+||-|-.+|+.+
T Consensus 62 ~~D~liVpGg~~~~~---~~~~-~~~l~~~l~~~~~~~--~~I~aic~G~~~La~a 111 (142)
T cd03132 62 LFDAVVVPGGAEAAF---ALAP-SGRALHFVTEAFKHG--KPIGAVGEGSDLLEAA 111 (142)
T ss_pred hcCEEEECCCccCHH---HHcc-ChHHHHHHHHHHhcC--CeEEEcCchHHHHHHc
Confidence 589999999754321 1111 114778888888777 9999999999999975
No 133
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=95.82 E-value=0.013 Score=49.57 Aligned_cols=51 Identities=27% Similarity=0.432 Sum_probs=37.5
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
..+|.|++||+.... ..+.. ...+.++++++.+++ ++|.+||-|..+|+.+
T Consensus 59 ~~~D~liipGg~~~~---~~~~~-~~~l~~~l~~~~~~~--~~i~~ic~g~~~La~a 109 (163)
T cd03135 59 DDYDAIVIPGGLPGA---QNLAD-NEKLIKLLKEFNAKG--KLIAAICAAPAVLAKA 109 (163)
T ss_pred CCCCEEEECCCCchH---HHHHh-CHHHHHHHHHHHHcC--CEEEEEchhHHHHHHc
Confidence 579999999975211 11111 124788888888877 9999999999999986
No 134
>PRK04155 chaperone protein HchA; Provisional
Probab=95.80 E-value=0.013 Score=54.88 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=37.9
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
.+.||+|++|||... +..+... ..+.++++++.+++ +||..||.|-++|..+
T Consensus 145 ~~dYDaV~iPGG~g~---~~dL~~~-~~l~~ll~~~~~~~--K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 145 DSDYAAVFIPGGHGA---LIGLPES-EDVAAALQWALDND--RFIITLCHGPAALLAA 196 (287)
T ss_pred cccccEEEECCCCch---HHHHhhC-HHHHHHHHHHHHcC--CEEEEEChHHHHHHHc
Confidence 468999999998543 2223221 14677788888887 9999999999877764
No 135
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=95.63 E-value=0.015 Score=50.15 Aligned_cols=52 Identities=19% Similarity=0.402 Sum_probs=37.7
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
...+|.|++||+.... ..+.. ...+.++++++.+++ ++|.+||-|..+|+.+
T Consensus 61 ~~~~D~l~v~Gg~~~~---~~~~~-~~~l~~~l~~~~~~~--~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 61 LEEFDAIVLPGGMPGA---ENLRN-SKLLLNILKKQESKG--KLVAAICAAPAVLLAA 112 (179)
T ss_pred cccCCEEEECCCchHH---HHHhh-CHHHHHHHHHHHHCC--CEEEEEChhHHHHHhc
Confidence 4578999999874211 11111 114788888888877 9999999999999986
No 136
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=95.62 E-value=0.022 Score=50.02 Aligned_cols=50 Identities=16% Similarity=0.397 Sum_probs=35.4
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHH
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLY 171 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~ 171 (350)
+.+|.|++||+..... .+... ..+.++++++.++| ++|.+||.|-.+|..
T Consensus 65 ~~~D~l~ipGG~~~~~---~~~~~-~~l~~~L~~~~~~g--~~v~aic~G~~~ll~ 114 (196)
T PRK11574 65 GDFDVIVLPGGIKGAE---CFRDS-PLLVETVRQFHRSG--RIVAAICAAPATVLV 114 (196)
T ss_pred CCCCEEEECCCCchhh---hhhhC-HHHHHHHHHHHHCC--CEEEEECHhHHHHHH
Confidence 4689999999743211 11110 13788889988888 999999999987553
No 137
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=95.55 E-value=0.022 Score=55.65 Aligned_cols=84 Identities=18% Similarity=0.251 Sum_probs=62.0
Q ss_pred ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhc-ccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhh
Q psy14047 28 KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILG-QVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQ 106 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~-~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (350)
..|--....+.|+++|+.++..+.-.+.+ +. .+|+|+|+||..-+. -
T Consensus 256 F~FyY~~nl~~Lr~~GAelv~FSPL~D~~-----lP~~~D~vYlgGGYPElf---------------------A------ 303 (451)
T COG1797 256 FNFYYPENLELLREAGAELVFFSPLADEE-----LPPDVDAVYLGGGYPELF---------------------A------ 303 (451)
T ss_pred hccccHHHHHHHHHCCCEEEEeCCcCCCC-----CCCCCCEEEeCCCChHHH---------------------H------
Confidence 44555889999999999999998877643 34 599999999973322 1
Q ss_pred hhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh
Q psy14047 107 SLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS 173 (350)
Q Consensus 107 ~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~ 173 (350)
+.+... ..+.+.++++.+.| +||+|=|-|+--|...+
T Consensus 304 ---------------------------~~L~~n-~~~~~~i~~~~~~G--~piyaECGGlMYL~~~l 340 (451)
T COG1797 304 ---------------------------EELSAN-ESMRRAIKAFAAAG--KPIYAECGGLMYLGESL 340 (451)
T ss_pred ---------------------------HHHhhC-HHHHHHHHHHHHcC--CceEEecccceeehhhe
Confidence 112111 13567788888888 99999999998888765
No 138
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=95.53 E-value=0.058 Score=49.56 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=23.1
Q ss_pred HHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 143 IYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 143 l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
+.+.++++.++| .|+.|+-.|.-+|+..
T Consensus 105 l~~~l~~~~~~G--~vi~G~SAGA~i~~~~ 132 (250)
T TIGR02069 105 LLDRLRKRVHEG--IILGGTSAGAAVMSDT 132 (250)
T ss_pred HHHHHHHHHHcC--CeEEEccHHHHhcccc
Confidence 666777788888 9999999999888644
No 139
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=95.36 E-value=0.051 Score=48.12 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=55.7
Q ss_pred HHHHHHHcCCeEEEEecCCC-HHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHHH
Q psy14047 35 YVKAVEASGARVAPIFIGNP-EAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEK 113 (350)
Q Consensus 35 yv~~l~~~G~~~v~i~~~~~-~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (350)
..++++..|..+.-|+...+ .+.++.+|...|+|++.||.. .+ .
T Consensus 54 ~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNT-F~-------------------L--------------- 98 (224)
T COG3340 54 VRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNT-FN-------------------L--------------- 98 (224)
T ss_pred HHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchH-HH-------------------H---------------
Confidence 34677788888888887544 567788888888888888873 11 0
Q ss_pred HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHH
Q psy14047 114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQL 168 (350)
Q Consensus 114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~Ql 168 (350)
...|.+++ +.+.++++.++| +|.+|+-.|.-+
T Consensus 99 -------------------L~~lke~g--ld~iIr~~vk~G--~~YiG~SAGA~i 130 (224)
T COG3340 99 -------------------LQELKETG--LDDIIRERVKAG--TPYIGWSAGANI 130 (224)
T ss_pred -------------------HHHHHHhC--cHHHHHHHHHcC--CceEEeccCcee
Confidence 22344443 888999999999 999999988543
No 140
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=95.29 E-value=0.095 Score=47.06 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=38.5
Q ss_pred hHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 110 KIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 110 ~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
++.+.+.++|+|++.|+..... .+.|..+ .+.+.+++..++| .|+.|+-.|.-++...
T Consensus 76 ~~~~~l~~ad~I~~~GG~~~~~-~~~l~~t--~l~~~l~~~~~~G--~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 76 EVVARLRDADGIFFTGGDQLRI-TSALGGT--PLLDALRKVYRGG--VVIGGTSAGAAVMSDT 133 (217)
T ss_pred HHHHHHHhCCEEEEeCCcHHHH-HHHHcCC--hHHHHHHHHHHcC--CEEEEccHHHHhhhhc
Confidence 4455666777777766543221 2333332 3667778877788 9999999999998764
No 141
>PRK11249 katE hydroperoxidase II; Provisional
Probab=95.09 E-value=0.14 Score=53.76 Aligned_cols=50 Identities=20% Similarity=0.134 Sum_probs=37.1
Q ss_pred cCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 117 QVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 117 ~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
.+|+|++||+.... ..+... ..++++++++.+.+ ++|.+||-|.++|+.+
T Consensus 658 ~FDAVvVPGG~~~~---~~L~~d-~~al~fL~eaykHg--K~IAAiCaG~~LLaaA 707 (752)
T PRK11249 658 TFDAVIVPGGKANI---ADLADN-GDARYYLLEAYKHL--KPIALAGDARKLKAAL 707 (752)
T ss_pred CCCEEEECCCchhH---HHHhhC-HHHHHHHHHHHHcC--CEEEEeCccHHHHHhc
Confidence 58999999974322 122111 14788899988887 9999999999999974
No 142
>KOG2764|consensus
Probab=94.69 E-value=0.049 Score=48.62 Aligned_cols=52 Identities=19% Similarity=0.327 Sum_probs=35.4
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhc
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN 174 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~G 174 (350)
+.||.||||||..... .+... ..+.+.++++.+.| ++|..||.| |+++.+.+
T Consensus 66 ~~yDviilPGG~~g~e---~L~~~-~~v~~lvK~q~~~g--kLIaaICaa-p~~al~a~ 117 (247)
T KOG2764|consen 66 SKYDVIILPGGLPGAE---TLSEC-EKVVDLVKEQAESG--KLIAAICAA-PLTALAAH 117 (247)
T ss_pred ccccEEEecCCchhhh---hhhhc-HHHHHHHHHHHhcC--CeEEEeecc-hHHHHhhc
Confidence 7899999999854332 22211 13667788888777 999999999 44444433
No 143
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=94.50 E-value=0.079 Score=45.98 Aligned_cols=50 Identities=14% Similarity=0.097 Sum_probs=37.2
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
...+|.||+||+..... ..- ..++++++++.+++ +.|.+||-|..+|+.+
T Consensus 62 ~~~~D~liipgg~~~~~--~~~----~~~~~~l~~~~~~~--~~i~aic~g~~~La~a 111 (185)
T cd03136 62 APPLDYLFVVGGLGARR--AVT----PALLAWLRRAARRG--VALGGIDTGAFLLARA 111 (185)
T ss_pred cCCCCEEEEeCCCCccc--cCC----HHHHHHHHHHHhcC--CEEEEEcHHHHHHHHc
Confidence 45789999998744321 111 14778888888777 9999999999999974
No 144
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=94.33 E-value=0.069 Score=46.08 Aligned_cols=51 Identities=18% Similarity=0.343 Sum_probs=37.0
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
...+|+||+||+..... +.. ...+.++++++.+++ ++|.++|.|.-+|+.+
T Consensus 60 ~~~~D~lvipgg~~~~~----~~~-~~~~~~~l~~~~~~~--k~i~aic~g~~~La~a 110 (183)
T cd03139 60 PPDLDVLLVPGGGGTRA----LVN-DPALLDFIRRQAARA--KYVTSVCTGALLLAAA 110 (183)
T ss_pred CCCCCEEEECCCcchhh----hcc-CHHHHHHHHHhcccC--CEEEEEchHHHHHHhc
Confidence 34689999999753221 110 014778888888777 9999999999888875
No 145
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=94.17 E-value=0.091 Score=49.96 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=37.8
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
.+.+|.||+||+..... . .. ..+.++++++.+++ ++|.|||-|.-+|+.+
T Consensus 73 ~~~~D~livpGg~~~~~-~--~~---~~l~~~l~~~~~~~--~~i~aic~g~~~La~a 122 (322)
T PRK09393 73 LDRADTIVIPGWRGPDA-P--VP---EPLLEALRAAHARG--ARLCSICSGVFVLAAA 122 (322)
T ss_pred cCCCCEEEECCCCcccc-c--CC---HHHHHHHHHHHHcC--CEEEEEcHHHHHHHhc
Confidence 56789999999754321 1 11 14788898888877 8999999999998876
No 146
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=93.73 E-value=0.091 Score=44.72 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=36.9
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
...+|.||+||+..... .... ..+.+++++..+++ .+|.|||-|..+|+.+
T Consensus 59 ~~~~D~lvvpg~~~~~~---~~~~--~~l~~~l~~~~~~~--~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 59 APDFDILVVPGGPGFDA---AAKD--PALLDWLRQQHAQG--TYIAAICTGALLLAEA 109 (166)
T ss_dssp CSCCSEEEEE-STTHHH---HTT---HHHHHHHHHHHCCT--SEEEEETTHHHHHHHT
T ss_pred cccCCEEEeCCCCCchh---cccC--HHHHHHhhhhhccc--eEEeeeehHHHHHhhh
Confidence 56789999999876111 1111 14778888877777 9999999999999986
No 147
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=84.66 E-value=0.63 Score=37.84 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=31.3
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCc
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNE 176 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~ 176 (350)
+.+.++|.|++-||=+. ..+.. -.+.+++..++...+|++|+|+ |-|....|-.
T Consensus 81 e~~n~aDvvVLlGGLaM----P~~gv----~~d~~kel~ee~~~kkliGvCf--m~mF~ragW~ 134 (154)
T COG4090 81 EELNSADVVVLLGGLAM----PKIGV----TPDDAKELLEELGNKKLIGVCF--MNMFERAGWD 134 (154)
T ss_pred cccccccEEEEEccccc----CcCCC----CHHHHHHHHHhcCCCceEEeeH--HHHHHHcCcc
Confidence 45678999999776442 21111 1233444444445689999994 5566554543
No 148
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=80.80 E-value=2 Score=38.28 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCc
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGA 75 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~ 75 (350)
.+++++|++.|+++ .+.+..+.++ ++.+|||||||++.
T Consensus 15 ~s~~~al~~~g~~~-~v~~~~~~~~----l~~~d~lIlpG~~~ 52 (209)
T PRK13146 15 RSAAKALERAGAGA-DVVVTADPDA----VAAADRVVLPGVGA 52 (209)
T ss_pred HHHHHHHHHcCCCc-cEEEECCHHH----hcCCCEEEECCCCc
Confidence 78889999999954 3333344433 58899999999874
No 149
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.90 E-value=4.7 Score=38.19 Aligned_cols=36 Identities=11% Similarity=0.038 Sum_probs=25.0
Q ss_pred EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEec
Q psy14047 8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFI 51 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~ 51 (350)
.|||...+.. ....-+.....+||.+.|..++....
T Consensus 7 ~I~iv~~~~~--------~~~~~~~~~l~~~L~~~g~~v~~~~~ 42 (306)
T PRK03372 7 RVLLVAHTGR--------DEATEAARRVAKQLGDAGIGVRVLDA 42 (306)
T ss_pred EEEEEecCCC--------HHHHHHHHHHHHHHHHCCCEEEEeec
Confidence 4999987642 11233567788899999998877653
No 150
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=78.32 E-value=48 Score=29.31 Aligned_cols=83 Identities=8% Similarity=-0.067 Sum_probs=42.1
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHH-------HHHHHHhcCccccCCccCc
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGF-------QLLLYTSNNENELRTRCDC 185 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~-------QlLa~a~Gg~v~~~~~~~~ 185 (350)
+.|+.+|.||+...+... +.. ...+.+.++.++| ++++|+..+. .-....+||... .
T Consensus 48 ~~L~~~Dvvv~~~~~~~~-----l~~---~~~~al~~~v~~G--gglv~lH~~~~~~~~~~~~~~~l~Gg~f~------~ 111 (217)
T PF06283_consen 48 ENLKGYDVVVFYNTGGDE-----LTD---EQRAALRDYVENG--GGLVGLHGAATDSFPDWPEYNELLGGYFK------G 111 (217)
T ss_dssp HCHCT-SEEEEE-SSCCG-----S-H---HHHHHHHHHHHTT---EEEEEGGGGGCCHTT-HHHHHHHS--SE------E
T ss_pred hHhcCCCEEEEECCCCCc-----CCH---HHHHHHHHHHHcC--CCEEEEcccccccchhHHHHHHeeCcccc------C
Confidence 458999999995543211 111 1345566777788 9999999443 223345566531 1
Q ss_pred eeeeeeceeecCCCCCcccccCCchh
Q psy14047 186 FYENLALEFMPSFRQSLLYSRAPIHV 211 (350)
Q Consensus 186 ~~~~~~i~~~~~~~~~~lf~~~~~~~ 211 (350)
+....+.........+++.+++|..+
T Consensus 112 h~~~~~~~v~~~~~~HPi~~gl~~~f 137 (217)
T PF06283_consen 112 HPPPQPFTVRVEDPDHPITRGLPESF 137 (217)
T ss_dssp EECEEEEEEEESSTTSCCCTTS-SEE
T ss_pred CCCCceEEEEEcCCCChhhcCCCCCc
Confidence 11112222223345788888887654
No 151
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=78.14 E-value=14 Score=31.51 Aligned_cols=72 Identities=24% Similarity=0.164 Sum_probs=42.6
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCC-HHHHHHhh------cccceEEcCCCCcc
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNP-EAYYRKIL------GQVNGVLIPGGGAS 76 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~-~~~~~~~l------~~~dGli~~GG~~d 76 (350)
..+|.|||.+.-... .. ..+--......++++.|+.+.......+ .+.+.+.+ +..|-|+.+||. .
T Consensus 2 ~~~~rv~vit~~d~~--~~----~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGt-g 74 (163)
T TIGR02667 2 FIPLRIAILTVSDTR--TE----EDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGT-G 74 (163)
T ss_pred CCccEEEEEEEeCcC--Cc----cCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCc-C
Confidence 356889998754331 11 1112223445678899999876655433 34443332 358999999886 5
Q ss_pred cccCCc
Q psy14047 77 FYADDG 82 (350)
Q Consensus 77 v~~~~~ 82 (350)
+.++|+
T Consensus 75 ~g~~D~ 80 (163)
T TIGR02667 75 FTGRDV 80 (163)
T ss_pred CCCCCC
Confidence 665544
No 152
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.61 E-value=6.6 Score=37.01 Aligned_cols=35 Identities=17% Similarity=0.050 Sum_probs=24.3
Q ss_pred EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEe
Q psy14047 8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIF 50 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~ 50 (350)
.|||..++.. ....-+.....+||++.|..++.-.
T Consensus 7 ~i~ii~~~~~--------~~~~~~~~~l~~~L~~~g~~v~~~~ 41 (296)
T PRK04539 7 NIGIVTRPNT--------PDIQDTAHTLITFLKQHGFTVYLDE 41 (296)
T ss_pred EEEEEecCCC--------HHHHHHHHHHHHHHHHCCCEEEEec
Confidence 3899987642 1133356778889999999887654
No 153
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=77.16 E-value=2.5 Score=37.31 Aligned_cols=36 Identities=31% Similarity=0.267 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCc
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGA 75 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~ 75 (350)
.+.+++|++.|+.++.++.. ++ ++++|+|||||++.
T Consensus 13 ~~v~~~l~~~g~~~~~~~~~---~~----l~~~d~lilPG~g~ 48 (201)
T PRK13152 13 NSVAKAFEKIGAINFIAKNP---KD----LQKADKLLLPGVGS 48 (201)
T ss_pred HHHHHHHHHCCCeEEEECCH---HH----HcCCCEEEECCCCc
Confidence 67778999999987776542 22 46799999999984
No 154
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=76.97 E-value=15 Score=30.48 Aligned_cols=50 Identities=20% Similarity=0.145 Sum_probs=33.1
Q ss_pred ccchhHHHHHHHHHcCCeEEEEecCCC-HHHHH----HhhcccceEEcCCCCcccc
Q psy14047 28 KSYIPASYVKAVEASGARVAPIFIGNP-EAYYR----KILGQVNGVLIPGGGASFY 78 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~-~~~~~----~~l~~~dGli~~GG~~dv~ 78 (350)
.+-......++|++.|+.+.......+ .+.+. +.++..|-||.+||. ...
T Consensus 25 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~-g~g 79 (144)
T TIGR00177 25 YDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGT-GVG 79 (144)
T ss_pred EeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCC-CCC
Confidence 344445566789999999886655433 34443 345678999999987 444
No 155
>PRK01215 competence damage-inducible protein A; Provisional
Probab=76.79 E-value=9.2 Score=35.42 Aligned_cols=66 Identities=15% Similarity=0.062 Sum_probs=40.6
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHcCCeEEEEecCCC-HHHH----HHhhcccceEEcCCCC
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEASGARVAPIFIGNP-EAYY----RKILGQVNGVLIPGGG 74 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~-~~~~----~~~l~~~dGli~~GG~ 74 (350)
|.+|.++|.+.-... ..+. ..--.....+.+.+.|..+.......+ .+.+ .+.++..|-||++||-
T Consensus 1 ~~~~~v~Ii~~GdEl-----l~G~i~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~ 72 (264)
T PRK01215 1 MDKWFAWIITIGNEL-----LIGRTVNTNASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGL 72 (264)
T ss_pred CCCCEEEEEEEChhc-----cCCeEEEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 468999998765332 1222 222233445678999999875554333 3333 4445667999999886
No 156
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.44 E-value=6.3 Score=37.06 Aligned_cols=34 Identities=24% Similarity=0.100 Sum_probs=23.8
Q ss_pred EEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEe
Q psy14047 9 IGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIF 50 (350)
Q Consensus 9 Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~ 50 (350)
|||..++.. ....-+.....+||++.|..++...
T Consensus 3 igii~~~~~--------~~~~~~~~~i~~~l~~~g~~v~~~~ 36 (292)
T PRK01911 3 IAIFGQTYQ--------ESASPYIQELFDELEERGAEVLIEE 36 (292)
T ss_pred EEEEeCCCC--------HHHHHHHHHHHHHHHHCCCEEEEec
Confidence 888877642 1233456778889999999887754
No 157
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=76.31 E-value=9.6 Score=37.58 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=47.8
Q ss_pred CCCCEEEEEccCCCCCC-CCCCC-Cc-ccchhHHHHHHHHHcCCeEEEEecCCCH-HH----HHHhhcccceEEcCCCCc
Q psy14047 4 TERPIIGILTQEPCLGV-DKHFA-DF-KSYIPASYVKAVEASGARVAPIFIGNPE-AY----YRKILGQVNGVLIPGGGA 75 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~-~~~~~-~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~~-~~----~~~~l~~~dGli~~GG~~ 75 (350)
..||.|||.+.-.++-. .+.+. +. .+.-.......|+++|+.++.+....++ +. +++.++..|-||.+||.
T Consensus 174 ~rkprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG~- 252 (404)
T COG0303 174 YRKPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGGV- 252 (404)
T ss_pred ecCCEEEEEecCccccCCCCCCCCCeEEecCHHHHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCCc-
Confidence 56899999987655411 11122 22 3333345567889999998887776553 33 44456779999999998
Q ss_pred ccc
Q psy14047 76 SFY 78 (350)
Q Consensus 76 dv~ 78 (350)
++.
T Consensus 253 SvG 255 (404)
T COG0303 253 SVG 255 (404)
T ss_pred cCc
Confidence 454
No 158
>KOG3210|consensus
Probab=76.24 E-value=4.5 Score=34.55 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=17.6
Q ss_pred CCceEEEEEEcCCccEEEEcccCCcC
Q psy14047 253 RGLKFISSVEHKVYPFAGIQFHPEKN 278 (350)
Q Consensus 253 ~~~e~v~ai~~~~~~i~gvQfHPE~~ 278 (350)
++.+.|-|.+- ++||+++.||||..
T Consensus 181 nG~~~iVAa~Q-~~~iL~TSFHPELa 205 (226)
T KOG3210|consen 181 NGQELIVAAKQ-KNNILATSFHPELA 205 (226)
T ss_pred CCcEEEEEEec-cCCEeeeecChhhh
Confidence 34444555553 45899999999976
No 159
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=76.05 E-value=12 Score=37.01 Aligned_cols=78 Identities=15% Similarity=0.071 Sum_probs=45.0
Q ss_pred CCCCEEEEEccCCCCCC-CCCC-CCc-ccchhHHHHHHHHHcCCeEEEEecCC-CHHHHHHh----hcccceEEcCCCCc
Q psy14047 4 TERPIIGILTQEPCLGV-DKHF-ADF-KSYIPASYVKAVEASGARVAPIFIGN-PEAYYRKI----LGQVNGVLIPGGGA 75 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~-~~~~-~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~----l~~~dGli~~GG~~ 75 (350)
..+|.|||.+.-.+.-. .... .+. +.-.......++++.|+.++.+.... +.+.+.+. ++..|-||++||.
T Consensus 175 ~~~prV~iistGdEl~~~~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG~- 253 (411)
T PRK10680 175 VRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGV- 253 (411)
T ss_pred cCCCEEEEEccCCeEeCCCCCCCCCEEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCCC-
Confidence 46899999875433210 0111 111 22222234567899999987665543 34445443 4568999999887
Q ss_pred ccccCCc
Q psy14047 76 SFYADDG 82 (350)
Q Consensus 76 dv~~~~~ 82 (350)
.+.+.|+
T Consensus 254 S~G~~D~ 260 (411)
T PRK10680 254 SVGEADY 260 (411)
T ss_pred CCCCcch
Confidence 5664443
No 160
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=74.87 E-value=3 Score=36.73 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCC
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGG 74 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~ 74 (350)
.++.++|+++|+.+..++. .. -++.+|||++|||+
T Consensus 14 ~~~~~~l~~~G~~~~~~~~---~~----~~~~~d~iii~G~~ 48 (200)
T PRK13143 14 RSVSKALERAGAEVVITSD---PE----EILDADGIVLPGVG 48 (200)
T ss_pred HHHHHHHHHCCCeEEEECC---HH----HHccCCEEEECCCC
Confidence 7889999999999888752 22 25789999999965
No 161
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=74.36 E-value=3 Score=36.70 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCC
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGG 74 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~ 74 (350)
.+.+++|++.|+.++.+... ++ +...|+||+||++
T Consensus 13 ~s~~~al~~~g~~~~~v~~~---~~----l~~~D~lIlPG~g 47 (192)
T PRK13142 13 SNVKRAIEHLGYEVVVSNTS---KI----IDQAETIILPGVG 47 (192)
T ss_pred HHHHHHHHHcCCCEEEEeCH---HH----hccCCEEEECCCC
Confidence 77889999999998887532 22 4679999999997
No 162
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.29 E-value=7.3 Score=36.62 Aligned_cols=36 Identities=14% Similarity=0.010 Sum_probs=24.7
Q ss_pred CEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEe
Q psy14047 7 PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIF 50 (350)
Q Consensus 7 p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~ 50 (350)
..|||..++.. ....-+.....+||++.|..+....
T Consensus 6 ~~i~iv~~~~~--------~~~~~~~~~i~~~l~~~g~~v~~~~ 41 (292)
T PRK03378 6 KCIGIVGHPRH--------PTALTTHEMLYHWLTSKGYEVIVEQ 41 (292)
T ss_pred CEEEEEEeCCC--------HHHHHHHHHHHHHHHHCCCEEEEec
Confidence 35899987642 1233456778889999998876543
No 163
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=72.90 E-value=21 Score=36.71 Aligned_cols=78 Identities=12% Similarity=0.115 Sum_probs=45.5
Q ss_pred CCCCEEEEEccCCCCCC-CCCC-CCc-ccchhHHHHHHHHHcCCeEEEEecCC-CHHHHHH----hhcccceEEcCCCCc
Q psy14047 4 TERPIIGILTQEPCLGV-DKHF-ADF-KSYIPASYVKAVEASGARVAPIFIGN-PEAYYRK----ILGQVNGVLIPGGGA 75 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~-~~~~-~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~-~~~~~~~----~l~~~dGli~~GG~~ 75 (350)
..||.|||.+.-.+.-. ...+ .+. ++.-......++++.|+.+..++... +.+.+++ .++..|-||++||.
T Consensus 177 ~~rprV~IisTGdELv~pg~~l~~G~I~dsNs~~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~~~DlVIttGGt- 255 (546)
T PRK14497 177 YEKPKIYLIATGDELVEPGNSLSPGKIYESNLHYLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAISVADVLILTGGT- 255 (546)
T ss_pred ccCCEEEEEEcCCcccCCCCCCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCc-
Confidence 46899999875543310 1111 122 33323334555888999987665543 3444444 45678999999987
Q ss_pred ccccCCc
Q psy14047 76 SFYADDG 82 (350)
Q Consensus 76 dv~~~~~ 82 (350)
.+...|+
T Consensus 256 S~G~~D~ 262 (546)
T PRK14497 256 SAGEKDF 262 (546)
T ss_pred cCCCCcc
Confidence 5554443
No 164
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=72.75 E-value=8.6 Score=36.42 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=24.1
Q ss_pred EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEe
Q psy14047 8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIF 50 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~ 50 (350)
.|||..++.. ....-+.....+|+++.|..++...
T Consensus 3 ~igiv~n~~~--------~~~~~~~~~l~~~L~~~g~~v~~~~ 37 (305)
T PRK02649 3 KAGIIYNDGK--------PLAVRTAEELQDKLEAAGWEVVRAS 37 (305)
T ss_pred EEEEEEcCCC--------HHHHHHHHHHHHHHHHCCCEEEEec
Confidence 4888877642 1133356778889999999887654
No 165
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=72.72 E-value=19 Score=35.70 Aligned_cols=76 Identities=11% Similarity=-0.022 Sum_probs=43.5
Q ss_pred CCCCEEEEEccCCCCCC-CCCCC-Cc-ccchhHHHHHHHHHcCCeEEEEecCCC-HHHHHH----hhcccceEEcCCCCc
Q psy14047 4 TERPIIGILTQEPCLGV-DKHFA-DF-KSYIPASYVKAVEASGARVAPIFIGNP-EAYYRK----ILGQVNGVLIPGGGA 75 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~-~~~~~-~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~-~~~~~~----~l~~~dGli~~GG~~ 75 (350)
..+|.|||++.-.+.-. ..... +. ..--.......+++.|+.+.......+ .+.+.+ .++..|-||++||.
T Consensus 191 ~~~prV~IisTGdEl~~~g~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~- 269 (419)
T PRK14690 191 RRPLRVAVLSTGDELVEPGALAEVGQIYDANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGA- 269 (419)
T ss_pred ecCCEEEEEEccccccCCCCCCCCCeEEeCHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCc-
Confidence 46899999876433210 01111 11 232233445668899999876655433 344433 44568999999886
Q ss_pred ccccC
Q psy14047 76 SFYAD 80 (350)
Q Consensus 76 dv~~~ 80 (350)
.+.+.
T Consensus 270 S~G~~ 274 (419)
T PRK14690 270 SAGDE 274 (419)
T ss_pred cCCCc
Confidence 55533
No 166
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=72.10 E-value=5 Score=35.76 Aligned_cols=42 Identities=21% Similarity=0.331 Sum_probs=26.3
Q ss_pred CCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHH
Q psy14047 118 VNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLG 165 (350)
Q Consensus 118 ~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G 165 (350)
-..||+|||..-.+ ...........+....++| --.||||.|
T Consensus 50 T~lLV~pGGaDlpY----~~~l~g~g~a~i~~yvk~G--G~fLGiCAG 91 (253)
T COG4285 50 TLLLVFPGGADLPY----VQVLQGLGTARIKNYVKEG--GNFLGICAG 91 (253)
T ss_pred eEEEEecCCCCchH----HHHhcchhhhhHHHHHhcC--CeEEEEecc
Confidence 35788899875322 1222112345566677777 789999998
No 167
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=70.68 E-value=24 Score=33.54 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=44.1
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHcCCeEEEEecCC-CHHHHHH----hhcc-cceEEcCCCCcc
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEASGARVAPIFIGN-PEAYYRK----ILGQ-VNGVLIPGGGAS 76 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~-~~~~~~~----~l~~-~dGli~~GG~~d 76 (350)
..+|.+||.+.-.+. ..+. .+-.......++++.|+.++...... +.+.+.+ .+++ .|-|++|||. .
T Consensus 157 ~r~~rv~II~TG~Ev-----~~G~i~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGt-s 230 (312)
T cd03522 157 FRPLRVGLIVTGSEV-----YGGRIEDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGA-S 230 (312)
T ss_pred cCCCEEEEEEcCCcC-----CCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCc-c
Confidence 567899999854321 1111 22223445577889999987655543 3344433 3444 7888888886 6
Q ss_pred cccCCc
Q psy14047 77 FYADDG 82 (350)
Q Consensus 77 v~~~~~ 82 (350)
++++|+
T Consensus 231 vg~~D~ 236 (312)
T cd03522 231 VDPDDV 236 (312)
T ss_pred cCCcch
Confidence 776654
No 168
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=70.67 E-value=24 Score=28.72 Aligned_cols=50 Identities=16% Similarity=0.046 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHcCCeEEEEecCC-CHHHH----HHhhcccceEEcCCCCcccccCC
Q psy14047 31 IPASYVKAVEASGARVAPIFIGN-PEAYY----RKILGQVNGVLIPGGGASFYADD 81 (350)
Q Consensus 31 i~~~yv~~l~~~G~~~v~i~~~~-~~~~~----~~~l~~~dGli~~GG~~dv~~~~ 81 (350)
......+++++.|..+....... +.+.+ .+.++..|.|+.+||. .+.++|
T Consensus 20 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~-g~g~~D 74 (133)
T cd00758 20 NGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGT-GVGRRD 74 (133)
T ss_pred hHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCC-CCCCCc
Confidence 33455577899999887665433 33434 4445668999999886 555443
No 169
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=70.49 E-value=4 Score=35.88 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCc
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGA 75 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~ 75 (350)
.++.++|++.|+.+..+.. .+. +..+|+||+||++.
T Consensus 14 ~s~~~~l~~~g~~~~~v~~---~~~----~~~~d~iIlPG~G~ 49 (196)
T PRK13170 14 SSVKFAIERLGYEPVVSRD---PDV----ILAADKLFLPGVGT 49 (196)
T ss_pred HHHHHHHHHCCCeEEEECC---HHH----hCCCCEEEECCCCc
Confidence 5677899999998888853 222 56789999999653
No 170
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=69.67 E-value=5 Score=35.22 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCC
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGG 74 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~ 74 (350)
.++++++++.|..+..+. +.++ +..+|+||+||++
T Consensus 13 ~~~~~~l~~~g~~v~~~~---~~~~----l~~~d~lilpG~g 47 (199)
T PRK13181 13 RSVANALKRLGVEAVVSS---DPEE----IAGADKVILPGVG 47 (199)
T ss_pred HHHHHHHHHCCCcEEEEc---ChHH----hccCCEEEECCCC
Confidence 677889999999987773 2222 4679999999976
No 171
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=69.04 E-value=5.4 Score=34.95 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCC
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGG 74 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~ 74 (350)
.+.+++|+++|..+..++... . ++..|+|++|||+
T Consensus 12 ~~~~~~l~~~g~~v~v~~~~~---~----l~~~d~iiipG~~ 46 (198)
T cd01748 12 RSVANALERLGAEVIITSDPE---E----ILSADKLILPGVG 46 (198)
T ss_pred HHHHHHHHHCCCeEEEEcChH---H----hccCCEEEECCCC
Confidence 566799999999988887421 1 5689999999875
No 172
>PRK09065 glutamine amidotransferase; Provisional
Probab=68.55 E-value=4.8 Score=36.57 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=24.7
Q ss_pred HHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccc
Q psy14047 38 AVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFY 78 (350)
Q Consensus 38 ~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~ 78 (350)
.+...|.....+....... +.+ ++.+||||++||+.+++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~-~p~-~~~~dgvvi~Gg~~~~~ 68 (237)
T PRK09065 30 ALGLAEQPVVVVRVFAGEP-LPA-PDDFAGVIITGSWAMVT 68 (237)
T ss_pred HhccCCceEEEEeccCCCC-CCC-hhhcCEEEEeCCCcccC
Confidence 3444677766666554321 111 46799999999997654
No 173
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=68.19 E-value=34 Score=28.57 Aligned_cols=48 Identities=23% Similarity=0.280 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCeEEEEecCCC-HHHHHH----hhc--ccceEEcCCCCcccccCC
Q psy14047 33 ASYVKAVEASGARVAPIFIGNP-EAYYRK----ILG--QVNGVLIPGGGASFYADD 81 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~-~~~~~~----~l~--~~dGli~~GG~~dv~~~~ 81 (350)
....+++++.|+.+.......+ .+.+.+ .++ ..|-|+.+||. .+.++|
T Consensus 23 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~-s~g~~D 77 (152)
T cd00886 23 PALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGT-GLAPRD 77 (152)
T ss_pred HHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCc-CCCCCc
Confidence 3455679999999876665433 444444 334 68888999886 565444
No 174
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=67.41 E-value=5.8 Score=35.39 Aligned_cols=35 Identities=29% Similarity=0.449 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCC
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGG 74 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~ 74 (350)
.+++++|+.+|+.+..++.. +. ++.+|+|++||++
T Consensus 15 ~sl~~al~~~g~~v~vv~~~---~~----l~~~d~iIlPG~g 49 (210)
T CHL00188 15 HSVSRAIQQAGQQPCIINSE---SE----LAQVHALVLPGVG 49 (210)
T ss_pred HHHHHHHHHcCCcEEEEcCH---HH----hhhCCEEEECCCC
Confidence 77889999999999888642 22 4678999999966
No 175
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=67.21 E-value=1.1e+02 Score=31.71 Aligned_cols=67 Identities=15% Similarity=0.135 Sum_probs=40.9
Q ss_pred CCCEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHcCCeEEEEecCCC------------HH----HHHHhh--ccc
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEASGARVAPIFIGNP------------EA----YYRKIL--GQV 65 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~------------~~----~~~~~l--~~~ 65 (350)
.||+|||...+... .. ... -.-++...-+.++++|+.|+..+.-.. ++ .++..+ ..+
T Consensus 41 ~KP~IgI~ns~se~--~P--ch~hL~~la~~Vk~gv~~aGG~P~ef~ti~v~Dgi~~g~sl~~RelIAdsiE~~~~a~~~ 116 (577)
T PRK13016 41 GKPVIAILNTWSDA--NP--CHGHFRERVEDVKRGVLQAGGFPLELPALSLSENFVKPTTMLYRNLLAMETEELIRSHPV 116 (577)
T ss_pred cCCEEEEEecccCC--cC--chhhHHHHHHHHHHHHHHcCCeeEecccccCcccccCCcccccHHHHHHHHHHHHhcCCc
Confidence 69999999987653 11 111 233455566778889999976654221 11 122222 468
Q ss_pred ceEEcCCCCcc
Q psy14047 66 NGVLIPGGGAS 76 (350)
Q Consensus 66 dGli~~GG~~d 76 (350)
||+|+.+|= |
T Consensus 117 Dg~V~l~~C-D 126 (577)
T PRK13016 117 DGAVLMGGC-D 126 (577)
T ss_pred cceEEeccC-C
Confidence 999988874 5
No 176
>PRK05665 amidotransferase; Provisional
Probab=66.33 E-value=3.8 Score=37.37 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=14.8
Q ss_pred hcccceEEcCCCCcccc
Q psy14047 62 LGQVNGVLIPGGGASFY 78 (350)
Q Consensus 62 l~~~dGli~~GG~~dv~ 78 (350)
++.+||||++||+.+++
T Consensus 55 ~~~~dgiiitGs~~~v~ 71 (240)
T PRK05665 55 DEKFDAYLVTGSKADSF 71 (240)
T ss_pred cccCCEEEECCCCCCcc
Confidence 57899999999998774
No 177
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=66.22 E-value=29 Score=34.03 Aligned_cols=77 Identities=19% Similarity=0.152 Sum_probs=45.2
Q ss_pred CCCCEEEEEccCCCCCC-CCCC-CCc-ccchhHHHHHHHHHcCCeEEEEecCCC-HHHHH----HhhcccceEEcCCCCc
Q psy14047 4 TERPIIGILTQEPCLGV-DKHF-ADF-KSYIPASYVKAVEASGARVAPIFIGNP-EAYYR----KILGQVNGVLIPGGGA 75 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~-~~~~-~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~-~~~~~----~~l~~~dGli~~GG~~ 75 (350)
..+|.|||.+.-.+.-. .... .+. .+.-......+|++.|+.+..+....+ .+.+. +.++..|-||.+||.
T Consensus 166 ~~~~rv~ii~tGdEl~~~g~~~~~g~i~dsn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DliittGG~- 244 (394)
T cd00887 166 YRRPRVAIISTGDELVEPGEPLAPGQIYDSNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVITSGGV- 244 (394)
T ss_pred ecCCEEEEEeCCCcccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEeCCC-
Confidence 46899999976543200 0011 111 333334455678889999887765444 34443 345568999999987
Q ss_pred ccccCC
Q psy14047 76 SFYADD 81 (350)
Q Consensus 76 dv~~~~ 81 (350)
.+.+.|
T Consensus 245 s~g~~D 250 (394)
T cd00887 245 SVGDYD 250 (394)
T ss_pred CCCcch
Confidence 555433
No 178
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=65.60 E-value=27 Score=36.32 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=45.4
Q ss_pred CCCCEEEEEccCCCCCC-CCCCC-Cc-ccchhHHHHHHHHHcCCeEEEEecCC-CHHHHHH----hhcccceEEcCCCCc
Q psy14047 4 TERPIIGILTQEPCLGV-DKHFA-DF-KSYIPASYVKAVEASGARVAPIFIGN-PEAYYRK----ILGQVNGVLIPGGGA 75 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~-~~~~~-~~-~~~i~~~yv~~l~~~G~~~v~i~~~~-~~~~~~~----~l~~~dGli~~GG~~ 75 (350)
..+|.|||.+.-.+.-. ..... +. +..-......+|++.|+.+..+.... +.+.+.+ .++..|-||.+||.
T Consensus 365 ~~~prV~IistGdEl~~~g~~~~~g~i~dsn~~~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIIttGG~- 443 (597)
T PRK14491 365 FRRPKVAVFSTGDEVQAPGETLKPNCIYDSNRFTIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAAQADVVISSGGV- 443 (597)
T ss_pred ccCCEEEEEecCCeeccCCCcCCCCcEEeCCHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCc-
Confidence 56899999875543210 01111 11 22223345567889999987655433 3344433 44668999999987
Q ss_pred ccccCCc
Q psy14047 76 SFYADDG 82 (350)
Q Consensus 76 dv~~~~~ 82 (350)
.+.+.|+
T Consensus 444 s~G~~D~ 450 (597)
T PRK14491 444 SVGDADY 450 (597)
T ss_pred cCCCccc
Confidence 5665544
No 179
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=64.89 E-value=12 Score=30.62 Aligned_cols=48 Identities=10% Similarity=0.002 Sum_probs=29.3
Q ss_pred CCCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHH
Q psy14047 3 ATERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYR 59 (350)
Q Consensus 3 ~~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~ 59 (350)
+..||+|||.+-..-. + +... +.--+||.++|+.++-+-...++..++
T Consensus 88 ~~~k~vIgvVTK~DLa---e--d~dI----~~~~~~L~eaGa~~IF~~s~~d~~gv~ 135 (148)
T COG4917 88 IGVKKVIGVVTKADLA---E--DADI----SLVKRWLREAGAEPIFETSAVDNQGVE 135 (148)
T ss_pred ccccceEEEEeccccc---c--hHhH----HHHHHHHHHcCCcceEEEeccCcccHH
Confidence 3568899999965431 1 1112 233479999999987666554443333
No 180
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=63.66 E-value=1e+02 Score=28.68 Aligned_cols=110 Identities=14% Similarity=0.167 Sum_probs=66.0
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhc----ccceEEcCCCCcccc
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILG----QVNGVLIPGGGASFY 78 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~----~~dGli~~GG~~dv~ 78 (350)
..||.|+|+---... .-.|.+. ..-+....++-++++|+..++-....+++....++. ...|++-++-..+-+
T Consensus 159 ~~rq~vAVlVGg~nk--~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~N 236 (329)
T COG3660 159 LPRQRVAVLVGGNNK--AFVFQEDKAHQFASLLVKILENQGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYN 236 (329)
T ss_pred CCCceEEEEecCCCC--CCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCC
Confidence 357788877532210 1122222 444667889999999998877777777776666554 356666665422211
Q ss_pred cCCcccccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCcc
Q psy14047 79 ADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFP 158 (350)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~P 158 (350)
| -...|..+|.+|.+- |. +..+-|+...| +|
T Consensus 237 P-------------------------------Y~~~La~Adyii~Ta--------DS--------inM~sEAasTg--kP 267 (329)
T COG3660 237 P-------------------------------YIDMLAAADYIISTA--------DS--------INMCSEAASTG--KP 267 (329)
T ss_pred c-------------------------------hHHHHhhcceEEEec--------ch--------hhhhHHHhccC--CC
Confidence 1 134567788888874 11 23345555677 99
Q ss_pred EEEehH
Q psy14047 159 IMGICL 164 (350)
Q Consensus 159 IlGIC~ 164 (350)
|+-.|.
T Consensus 268 v~~~~~ 273 (329)
T COG3660 268 VFILEP 273 (329)
T ss_pred eEEEec
Confidence 998874
No 181
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=62.46 E-value=54 Score=28.83 Aligned_cols=73 Identities=11% Similarity=0.089 Sum_probs=38.0
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHcCCe---EEEEecCCCHHH----HHHhhc--ccceEEcCCC
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEASGAR---VAPIFIGNPEAY----YRKILG--QVNGVLIPGG 73 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~G~~---~v~i~~~~~~~~----~~~~l~--~~dGli~~GG 73 (350)
|+++.+||++.-... ..+. ..--......+|++.|.. +...-...+.+. +.+.++ .+|-||.+||
T Consensus 1 ~~~~~~aIItvSd~~-----~~G~i~D~ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGG 75 (193)
T PRK09417 1 MDTLKIGLVSISDRA-----SSGVYEDKGIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGG 75 (193)
T ss_pred CCCcEEEEEEEcCcC-----CCCceeechHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCC
Confidence 355778887754321 1111 222223445678888643 222122233333 344443 6899999988
Q ss_pred CcccccCCc
Q psy14047 74 GASFYADDG 82 (350)
Q Consensus 74 ~~dv~~~~~ 82 (350)
. .+.++|.
T Consensus 76 t-g~g~rDv 83 (193)
T PRK09417 76 T-GPARRDV 83 (193)
T ss_pred C-CCCCCCc
Confidence 6 5765554
No 182
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.95 E-value=15 Score=34.09 Aligned_cols=34 Identities=21% Similarity=0.427 Sum_probs=22.8
Q ss_pred cCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHH
Q psy14047 117 QVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLG 165 (350)
Q Consensus 117 ~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G 165 (350)
.+|.+|.-||.. .++..++.+...+ +|||||=.|
T Consensus 42 ~~d~vi~iGGDG-------------T~L~aa~~~~~~~--~PilgIn~G 75 (272)
T PRK02231 42 RAQLAIVIGGDG-------------NMLGRARVLAKYD--IPLIGINRG 75 (272)
T ss_pred CCCEEEEECCcH-------------HHHHHHHHhccCC--CcEEEEeCC
Confidence 467777777533 2555566655444 999999877
No 183
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=61.12 E-value=44 Score=34.97 Aligned_cols=78 Identities=24% Similarity=0.228 Sum_probs=45.7
Q ss_pred CCCCEEEEEccCCCCCC-CCCC-CCc-ccchhHHHHHHHHHcCCeEEEEecC-CCHHHHH----HhhcccceEEcCCCCc
Q psy14047 4 TERPIIGILTQEPCLGV-DKHF-ADF-KSYIPASYVKAVEASGARVAPIFIG-NPEAYYR----KILGQVNGVLIPGGGA 75 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~-~~~~-~~~-~~~i~~~yv~~l~~~G~~~v~i~~~-~~~~~~~----~~l~~~dGli~~GG~~ 75 (350)
..+|.|||.+.-.+.-. .... .+. .+--......+|++.|+.++..... .+.+.+. +.++..|-||++||.
T Consensus 184 ~~~prv~vi~tG~El~~~~~~~~~g~i~dsn~~~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~~~D~iIttGG~- 262 (633)
T PRK14498 184 YKKPRVGIISTGDELVEPGEPLKPGKIYDVNSYTLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALKECDLVLLSGGT- 262 (633)
T ss_pred ecCcEEEEEecCccccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEECCCC-
Confidence 46799999876433200 0001 121 2333344567799999998766543 3334443 344568999999987
Q ss_pred ccccCCc
Q psy14047 76 SFYADDG 82 (350)
Q Consensus 76 dv~~~~~ 82 (350)
.+.++|+
T Consensus 263 s~g~~D~ 269 (633)
T PRK14498 263 SAGAGDV 269 (633)
T ss_pred cCCCccc
Confidence 5665554
No 184
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=59.91 E-value=31 Score=32.37 Aligned_cols=34 Identities=9% Similarity=-0.060 Sum_probs=23.2
Q ss_pred EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEE
Q psy14047 8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPI 49 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i 49 (350)
.|||...+.. ....-+....++++++.|..+...
T Consensus 7 ~v~iv~~~~~--------~~~~e~~~~i~~~L~~~g~~v~v~ 40 (291)
T PRK02155 7 TVALIGRYQT--------PGIAEPLESLAAFLAKRGFEVVFE 40 (291)
T ss_pred EEEEEecCCC--------HHHHHHHHHHHHHHHHCCCEEEEe
Confidence 5899887642 113335677888999999886654
No 185
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=59.11 E-value=21 Score=34.11 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 142 MIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 142 ~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
.+.+++++..+.| .+|-|||-|.-+|+.+
T Consensus 96 ~l~~~Lr~~~~~G--~~l~gictGaf~LA~a 124 (328)
T COG4977 96 ALLAWLRRAARRG--ARLGGLCTGAFVLAEA 124 (328)
T ss_pred HHHHHHHHHHhcC--CeEEEehHhHHHHHHh
Confidence 3788899988888 9999999999999987
No 186
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=59.03 E-value=9 Score=33.75 Aligned_cols=35 Identities=31% Similarity=0.355 Sum_probs=27.5
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCC
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGG 74 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~ 74 (350)
..++++|++.|+.+..+.. .++ ++..||||+|||+
T Consensus 13 ~~i~~~l~~~G~~v~~~~~---~~~----l~~~d~iiipG~~ 47 (205)
T PRK13141 13 RSVEKALERLGAEAVITSD---PEE----ILAADGVILPGVG 47 (205)
T ss_pred HHHHHHHHHCCCeEEEECC---HHH----hccCCEEEECCCC
Confidence 6778999999999888753 222 5689999999976
No 187
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=58.80 E-value=23 Score=39.63 Aligned_cols=64 Identities=20% Similarity=0.355 Sum_probs=46.0
Q ss_pred CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCC---CHHHHHHhhcc-----cceEEcCCCC
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGN---PEAYYRKILGQ-----VNGVLIPGGG 74 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~---~~~~~~~~l~~-----~dGli~~GG~ 74 (350)
.+|+|||+...... .....-.-.+.++.||+.|..|+++.... ..+.++++|.. +|+||-+-+-
T Consensus 70 ~~P~VgIlfyrs~~------~~g~~~~vdaLI~~LE~~G~nvipvf~~~~~~~~~~i~~~f~~~g~~~vDaIIn~~~f 141 (1098)
T PF02514_consen 70 NRPTVGILFYRSYW------LSGNTAVVDALIRALEERGLNVIPVFCSSGPDSQEAIEDYFMDDGKPRVDAIINLTGF 141 (1098)
T ss_pred CCCEEEEEeehhhh------hcCCcHHHHHHHHHHHHCCCeEEEEEecCccchHHHHHHHHhhcCCCCceEEEEcCcc
Confidence 58999999877542 12223344689999999999999999654 34567777766 8988655543
No 188
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.49 E-value=19 Score=33.84 Aligned_cols=34 Identities=12% Similarity=-0.037 Sum_probs=23.4
Q ss_pred EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEe
Q psy14047 8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIF 50 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~ 50 (350)
.|||..++.. ...-+.....+|+++.|..+..-+
T Consensus 12 ~i~ii~~~~~---------~~~~~~~~i~~~l~~~g~~~~~~~ 45 (287)
T PRK14077 12 KIGLVTRPNV---------SLDKEILKLQKILSIYKVEILLEK 45 (287)
T ss_pred EEEEEeCCcH---------HHHHHHHHHHHHHHHCCCEEEEec
Confidence 5999987631 123345677889999998877654
No 189
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=57.74 E-value=5.5 Score=34.77 Aligned_cols=16 Identities=38% Similarity=0.798 Sum_probs=11.2
Q ss_pred HHHhccCCEEEeCCCC
Q psy14047 112 EKILGQVNGVLIPGGG 127 (350)
Q Consensus 112 ~~~l~~~dgvIipG~g 127 (350)
+++|+++||||+|||+
T Consensus 28 ~~dL~~~dgLIiPGGE 43 (188)
T PF01174_consen 28 PEDLEGLDGLIIPGGE 43 (188)
T ss_dssp GGGGTT-SEEEE-SS-
T ss_pred HHHHccCCEEEECCCc
Confidence 4678899999999973
No 190
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=56.76 E-value=52 Score=28.16 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCeEEEEecCCC-HHH----HHHhhcccceEEcCCCCcccc
Q psy14047 33 ASYVKAVEASGARVAPIFIGNP-EAY----YRKILGQVNGVLIPGGGASFY 78 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~-~~~----~~~~l~~~dGli~~GG~~dv~ 78 (350)
....++|++.|..+..+....+ .+. +.+.++..|-|+.+||. ...
T Consensus 22 ~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~-G~t 71 (170)
T cd00885 22 AFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGL-GPT 71 (170)
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCC-CCC
Confidence 4455788999999876554333 333 34445678999999886 444
No 191
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=56.21 E-value=19 Score=26.95 Aligned_cols=38 Identities=16% Similarity=0.306 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCccc
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASF 77 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv 77 (350)
...-++|++.|..++.+-...+ +..+|+++++|...++
T Consensus 11 s~v~~~L~~~GyeVv~l~~~~~-------~~~~daiVvtG~~~n~ 48 (80)
T PF03698_consen 11 SNVKEALREKGYEVVDLENEQD-------LQNVDAIVVTGQDTNM 48 (80)
T ss_pred hHHHHHHHHCCCEEEecCCccc-------cCCcCEEEEECCCccc
Confidence 3455899999999999975432 5789999999988665
No 192
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=56.00 E-value=7.6 Score=33.80 Aligned_cols=16 Identities=44% Similarity=0.831 Sum_probs=14.1
Q ss_pred HHHhccCCEEEeCCCC
Q psy14047 112 EKILGQVNGVLIPGGG 127 (350)
Q Consensus 112 ~~~l~~~dgvIipG~g 127 (350)
+++|+.+||||||||.
T Consensus 33 ~~dL~~~d~LIiPGGE 48 (194)
T COG0311 33 PEDLEGVDGLIIPGGE 48 (194)
T ss_pred HHHhccCcEEEecCcc
Confidence 6789999999999973
No 193
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.91 E-value=28 Score=32.72 Aligned_cols=35 Identities=11% Similarity=-0.078 Sum_probs=24.5
Q ss_pred EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEe
Q psy14047 8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIF 50 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~ 50 (350)
.|||..++.. ....-+.....+++++.|..+....
T Consensus 6 ~v~iv~~~~k--------~~a~e~~~~i~~~L~~~giev~v~~ 40 (295)
T PRK01231 6 NIGLIGRLGS--------SSVVETLRRLKDFLLDRGLEVILDE 40 (295)
T ss_pred EEEEEecCCC--------HHHHHHHHHHHHHHHHCCCEEEEec
Confidence 5899887642 1134456788899999998876654
No 194
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=53.61 E-value=31 Score=34.96 Aligned_cols=35 Identities=14% Similarity=0.069 Sum_probs=22.4
Q ss_pred EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHH-cCCeEEEEe
Q psy14047 8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEA-SGARVAPIF 50 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~-~G~~~v~i~ 50 (350)
.|||...+.. ....-+....++||++ .|..++.-+
T Consensus 196 ~VgIV~n~~k--------~~a~el~~~I~~~L~~~~gi~V~ve~ 231 (508)
T PLN02935 196 TVLIITKPNS--------TSVRVLCAEMVRWLREQKGLNIYVEP 231 (508)
T ss_pred EEEEEecCCC--------HHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 6888887642 1133456777888984 777766544
No 195
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=53.51 E-value=39 Score=27.41 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCeEEEEecC-CCHHHHH----HhhcccceEEcCCCCcccccCC
Q psy14047 33 ASYVKAVEASGARVAPIFIG-NPEAYYR----KILGQVNGVLIPGGGASFYADD 81 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~-~~~~~~~----~~l~~~dGli~~GG~~dv~~~~ 81 (350)
....+++++.|+.+...... .+.+.+. +.++..|-|+.+||. .+.++|
T Consensus 21 ~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~-g~g~~D 73 (135)
T smart00852 21 PALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGT-GPGPDD 73 (135)
T ss_pred HHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCC-CCCCCc
Confidence 34557899999886544332 3334443 344668999999986 455443
No 196
>PRK03094 hypothetical protein; Provisional
Probab=52.71 E-value=25 Score=26.31 Aligned_cols=38 Identities=11% Similarity=0.172 Sum_probs=29.8
Q ss_pred HHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccc
Q psy14047 34 SYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFY 78 (350)
Q Consensus 34 ~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~ 78 (350)
..-++|++.|-.|+.+....+ .+.+|+++++|-..|+.
T Consensus 12 ~i~~~L~~~GYeVv~l~~~~~-------~~~~Da~VitG~d~n~m 49 (80)
T PRK03094 12 DVQQALKQKGYEVVQLRSEQD-------AQGCDCCVVTGQDSNVM 49 (80)
T ss_pred HHHHHHHHCCCEEEecCcccc-------cCCcCEEEEeCCCccee
Confidence 355899999999999975332 46899999999887653
No 197
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=52.68 E-value=14 Score=32.41 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCC
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGG 74 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~ 74 (350)
.+..++|+..|+.+..++.. + .++..|+|++||+.
T Consensus 12 ~~l~~~l~~~g~~v~v~~~~---~----~l~~~d~lii~G~~ 46 (196)
T TIGR01855 12 GSVKRALKRVGAEPVVVKDS---K----EAELADKLILPGVG 46 (196)
T ss_pred HHHHHHHHHCCCcEEEEcCH---H----HhccCCEEEECCCC
Confidence 56778899999998888842 1 25789999999965
No 198
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=51.22 E-value=19 Score=25.13 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCc
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGA 75 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~ 75 (350)
..+.+.+++.|..+..++.......-.......++|+++||..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~ 57 (92)
T cd03128 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPG 57 (92)
T ss_pred ecHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCc
Confidence 4566889999999999988766432122357899999999984
No 199
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.95 E-value=33 Score=35.44 Aligned_cols=35 Identities=23% Similarity=0.500 Sum_probs=23.3
Q ss_pred cCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHH
Q psy14047 117 QVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGF 166 (350)
Q Consensus 117 ~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~ 166 (350)
.+|.+|.-||.. .++..++.+...+ +|||||=.|.
T Consensus 348 ~~dlvi~lGGDG-------------T~L~aa~~~~~~~--~PilGin~G~ 382 (569)
T PRK14076 348 EISHIISIGGDG-------------TVLRASKLVNGEE--IPIICINMGT 382 (569)
T ss_pred CCCEEEEECCcH-------------HHHHHHHHhcCCC--CCEEEEcCCC
Confidence 467777777543 2556666655444 9999998774
No 200
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=49.81 E-value=10 Score=32.90 Aligned_cols=15 Identities=27% Similarity=0.731 Sum_probs=12.6
Q ss_pred HHHhccCCEEEeCCC
Q psy14047 112 EKILGQVNGVLIPGG 126 (350)
Q Consensus 112 ~~~l~~~dgvIipG~ 126 (350)
+++++++|+||+|||
T Consensus 34 ~~~l~~~D~LILPGG 48 (179)
T PRK13526 34 NNDFDSIDRLVIPGG 48 (179)
T ss_pred HHHHhCCCEEEECCC
Confidence 456889999999994
No 201
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=49.51 E-value=1.1e+02 Score=29.13 Aligned_cols=85 Identities=20% Similarity=0.218 Sum_probs=47.0
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEE-cCCCCcccccCCccc
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVL-IPGGGASFYADDGYA 84 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli-~~GG~~dv~~~~~~~ 84 (350)
+|.|+|....+. +.+..|+. ..| +..++.|.+.|..++......+.+..+++.+.+...+ +.|-. +
T Consensus 175 ~~~i~i~pg~s~-~~~K~wp~-e~~--~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~-s-------- 241 (334)
T COG0859 175 RPYIVINPGASR-GSAKRWPL-EHY--AELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNAVILAGKT-S-------- 241 (334)
T ss_pred CCeEEEeccccc-cccCCCCH-HHH--HHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCccccCCCC-C--------
Confidence 688988876221 11222222 222 6778888888944444433333344455555665443 44432 2
Q ss_pred ccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCC
Q psy14047 85 KAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGG 126 (350)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~ 126 (350)
..++...++.+|.+|-+=+
T Consensus 242 -----------------------L~e~~~li~~a~l~I~~DS 260 (334)
T COG0859 242 -----------------------LEELAALIAGADLVIGNDS 260 (334)
T ss_pred -----------------------HHHHHHHHhcCCEEEccCC
Confidence 3456777888888777543
No 202
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=49.19 E-value=73 Score=31.53 Aligned_cols=95 Identities=11% Similarity=0.065 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCCeEEEEecCC--CHHHHHHhhc-----ccceE--EcCCCCcccccCC-----------ccc-ccceeee
Q psy14047 33 ASYVKAVEASGARVAPIFIGN--PEAYYRKILG-----QVNGV--LIPGGGASFYADD-----------GYA-KAGAMIY 91 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~--~~~~~~~~l~-----~~dGl--i~~GG~~dv~~~~-----------~~~-~~~~~~~ 91 (350)
++.++.|++.|+....|.... +.+.+.+.+. ..|.+ +-+-.+....+.. .+. ...+++|
T Consensus 168 RaLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvviD 247 (415)
T PLN02771 168 RAITRRLREDGSLIGVLSTEDSKTDEELLKMSRSWDIVGIDLISGVSCKSPYEWVDKTNPEWDFNTNSRDGESYHVIAYD 247 (415)
T ss_pred HHHHHHHHhcCCeeEEEecCCCCCHHHHHHHHHhCCCccCCccceecCCCCEEecCCCcccccccccccCCCCCEEEEEC
Confidence 678999999999988887643 3233222211 11211 1111110000000 011 2358899
Q ss_pred ecccchhhhhHHHhhh-------hhhHHHHh-ccCCEEEeCCCC
Q psy14047 92 KIAKEVSYRELDIWQS-------LLKIEKIL-GQVNGVLIPGGG 127 (350)
Q Consensus 92 ~~~~~~~~~~~~~~~~-------~~~~~~~l-~~~dgvIipG~g 127 (350)
++.|.++.+.+...+. +....+++ .++||||+.||.
T Consensus 248 ~G~K~nIlr~L~~~G~~v~VvP~~~~~~ei~~~~pDGIiLSnGP 291 (415)
T PLN02771 248 FGIKHNILRRLASYGCKITVVPSTWPASEALKMKPDGVLFSNGP 291 (415)
T ss_pred CChHHHHHHHHHHcCCeEEEECCCCCHHHHhhcCCCEEEEcCCC
Confidence 9999999888864431 33344444 368999996653
No 203
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=48.50 E-value=1e+02 Score=31.87 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCeEEEEecCCCH
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPE 55 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~ 55 (350)
.|+|+++.+.|.+|..|.+..+.
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~ 259 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPD 259 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCC
Confidence 79999999999999999997653
No 204
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=48.25 E-value=97 Score=32.71 Aligned_cols=77 Identities=21% Similarity=0.209 Sum_probs=44.8
Q ss_pred CCCCEEEEEccCCCCCCCC-C-C-CCc-ccchhHHHHHHHHHcCCeEEEEecC-CCHHHHHH----hhc-ccceEEcCCC
Q psy14047 4 TERPIIGILTQEPCLGVDK-H-F-ADF-KSYIPASYVKAVEASGARVAPIFIG-NPEAYYRK----ILG-QVNGVLIPGG 73 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~-~-~-~~~-~~~i~~~yv~~l~~~G~~~v~i~~~-~~~~~~~~----~l~-~~dGli~~GG 73 (350)
..+|.|||.+.-.+.-..+ . . .+. .+........++++.|+.++.+... .+.+.+.+ .+. ..|-||++||
T Consensus 179 ~~kprV~visTGdELv~~g~~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DlvItTGG 258 (659)
T PLN02699 179 YPRPTVAILSTGDELVEPTTGTLGRGQIRDSNRAMLLAAAIQQQCKVVDLGIARDDEEELERILDEAISSGVDILLTSGG 258 (659)
T ss_pred ecCCeEEEEeCCcccccCCCCCCCCCcEEeChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhcCCCCEEEECCC
Confidence 5689999987654331001 0 1 122 3333334567799999998866544 33444444 333 5899999988
Q ss_pred CcccccCC
Q psy14047 74 GASFYADD 81 (350)
Q Consensus 74 ~~dv~~~~ 81 (350)
. .+...|
T Consensus 259 t-s~G~~D 265 (659)
T PLN02699 259 V-SMGDRD 265 (659)
T ss_pred C-CCCCCc
Confidence 6 554333
No 205
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=48.17 E-value=93 Score=29.57 Aligned_cols=69 Identities=16% Similarity=0.099 Sum_probs=41.4
Q ss_pred EEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHcCCeEEEEecCCC-HHHHHHhh-----cccceEEcCCCCcccccC
Q psy14047 8 IIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEASGARVAPIFIGNP-EAYYRKIL-----GQVNGVLIPGGGASFYAD 80 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~-~~~~~~~l-----~~~dGli~~GG~~dv~~~ 80 (350)
.+||++.-... ..+. .+--......+|++.|+.++......+ .+.+.+.+ +..|-|+.+||. .+.++
T Consensus 157 ~~aIltvsde~-----~~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGt-g~g~~ 230 (312)
T PRK03604 157 SAAVLVLSDSI-----AAGTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGT-GLGPR 230 (312)
T ss_pred EEEEEEECCcC-----CCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCC-CCCCC
Confidence 57777654321 2222 333344566789999999887666544 34444332 357888888886 56655
Q ss_pred Cc
Q psy14047 81 DG 82 (350)
Q Consensus 81 ~~ 82 (350)
|+
T Consensus 231 D~ 232 (312)
T PRK03604 231 DV 232 (312)
T ss_pred cc
Confidence 43
No 206
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=47.83 E-value=1.3e+02 Score=28.40 Aligned_cols=62 Identities=18% Similarity=0.114 Sum_probs=41.7
Q ss_pred CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCC
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG 73 (350)
.++.||+...... ..++.-+...+.+++++.|..++......+.+. +..++ .++|||++.+.
T Consensus 24 ~~~~Ig~i~~~~~-------~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~ 90 (330)
T PRK10355 24 KEVKIGMAIDDLR-------LERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPY 90 (330)
T ss_pred CCceEEEEecCCC-------chHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4578999884332 223666778888999999999887766544332 23333 38999999864
No 207
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=47.79 E-value=49 Score=25.57 Aligned_cols=16 Identities=25% Similarity=0.617 Sum_probs=7.9
Q ss_pred HHHHHHHHhhCCCCccEEEeh
Q psy14047 143 IYKIAKEFNENRDYFPIMGIC 163 (350)
Q Consensus 143 l~~~i~~~~~~g~~~PIlGIC 163 (350)
+.+.+++.. +||+.+=
T Consensus 77 v~~la~~~~-----i~vi~t~ 92 (105)
T PF07085_consen 77 VLELAKELG-----IPVISTP 92 (105)
T ss_dssp HHHHHHHHT------EEEE-S
T ss_pred HHHHHHHCC-----CEEEEEC
Confidence 455555543 7777653
No 208
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=46.65 E-value=4.1 Score=25.84 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=11.1
Q ss_pred cEEEehHHHHHHHHHh
Q psy14047 158 PIMGICLGFQLLLYTS 173 (350)
Q Consensus 158 PIlGIC~G~QlLa~a~ 173 (350)
-.-|.|+|.|+|..+-
T Consensus 31 gtagacfgaqimvaak 46 (48)
T PF09075_consen 31 GTAGACFGAQIMVAAK 46 (48)
T ss_dssp SS--TTTTTHHHHTTT
T ss_pred Cccccccchhhhhhcc
Confidence 3578999999998653
No 209
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=46.15 E-value=17 Score=31.56 Aligned_cols=20 Identities=35% Similarity=0.702 Sum_probs=16.2
Q ss_pred HHHHhccCCEEEeCCCCCCc
Q psy14047 111 IEKILGQVNGVLIPGGGASF 130 (350)
Q Consensus 111 ~~~~l~~~dgvIipG~g~~~ 130 (350)
++..++.+||||+|||++..
T Consensus 47 ~~~~l~~~dglvl~GG~~~~ 66 (189)
T cd01745 47 LEQYLELLDGLLLTGGGDVD 66 (189)
T ss_pred HHHHHhhCCEEEECCCCCCC
Confidence 45667889999999998754
No 210
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.29 E-value=24 Score=30.03 Aligned_cols=63 Identities=13% Similarity=0.193 Sum_probs=43.9
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHH------HHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCcc
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKA------GAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNEN 177 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~------~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v 177 (350)
...+.+|++|+|||........++... ...+..+++.+.++| +|+==||..=-++...+|-.+
T Consensus 81 a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~ag--KP~G~iCIaP~m~pki~g~~~ 149 (217)
T COG3155 81 ADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAG--KPLGFMCIAPAMLPKIFGFPL 149 (217)
T ss_pred cCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhC--CCceEEEecHHHHHHHcCCce
Confidence 344678999999997654333333211 014667777777888 999999999999988887653
No 211
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=42.89 E-value=39 Score=27.78 Aligned_cols=48 Identities=19% Similarity=0.142 Sum_probs=31.3
Q ss_pred hHHHHHHHHHcCCeEEEEecC-CCHHHHHH----hhcccceEEcCCCCcccccC
Q psy14047 32 PASYVKAVEASGARVAPIFIG-NPEAYYRK----ILGQVNGVLIPGGGASFYAD 80 (350)
Q Consensus 32 ~~~yv~~l~~~G~~~v~i~~~-~~~~~~~~----~l~~~dGli~~GG~~dv~~~ 80 (350)
.....++|++.|+.+.....- .+.+.+.+ .++..|-|+.+||. .+.++
T Consensus 19 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~-g~~~~ 71 (144)
T PF00994_consen 19 GPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGT-GPGPD 71 (144)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSS-SSSTT
T ss_pred HHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCc-CcccC
Confidence 344567888899998754433 34444443 44677999999987 45443
No 212
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=42.76 E-value=1.1e+02 Score=29.78 Aligned_cols=94 Identities=16% Similarity=0.089 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCeEEEEecCC-CHHHHHHhhcc------cceE--EcCCCCcccccCC--cccccceeeeecccchhhhh
Q psy14047 33 ASYVKAVEASGARVAPIFIGN-PEAYYRKILGQ------VNGV--LIPGGGASFYADD--GYAKAGAMIYKIAKEVSYRE 101 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~------~dGl--i~~GG~~dv~~~~--~~~~~~~~~~~~~~~~~~~~ 101 (350)
++.++.|++.|.....|.... +.+.+.+.+.. .|.+ +-+..+. ..+.. .+....+++|++.+.+..+.
T Consensus 116 R~l~~~iR~~G~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~vs~~~~~-~~~~~~~~~~~~I~viD~G~k~nivr~ 194 (360)
T PRK12564 116 RALTRKLREKGAMKGVIATEDFDAEELLEKARAFPGLLGLDLVKEVSTKEPY-PWPGPGGELKYKVVAIDFGVKRNILRE 194 (360)
T ss_pred HHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCCcccCCcceeCCCCCE-ECCCCCCCCCCEEEEEeCCcHHHHHHH
Confidence 678999999999988887642 33332221111 1211 1111110 11100 00134588999999887776
Q ss_pred HHHhhh-------hhhHHHHhc-cCCEEEeCCCC
Q psy14047 102 LDIWQS-------LLKIEKILG-QVNGVLIPGGG 127 (350)
Q Consensus 102 ~~~~~~-------~~~~~~~l~-~~dgvIipG~g 127 (350)
+...+. .....+... ++||||++||+
T Consensus 195 L~~~G~~v~vvp~~~~~~~i~~~~~DGIvLSgGP 228 (360)
T PRK12564 195 LAERGCRVTVVPATTTAEEILALNPDGVFLSNGP 228 (360)
T ss_pred HHHCCCEEEEEeCCCCHHHHHhcCCCEEEEeCCC
Confidence 653221 222333332 69999997764
No 213
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=42.20 E-value=25 Score=32.24 Aligned_cols=38 Identities=13% Similarity=0.355 Sum_probs=27.3
Q ss_pred HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHH
Q psy14047 114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGF 166 (350)
Q Consensus 114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~ 166 (350)
.++++|.+|.-||.. .++..++.+...+ +|||||=.|.
T Consensus 22 ~~~~~Dlvi~iGGDG-------------TlL~a~~~~~~~~--~PvlGIN~G~ 59 (246)
T PRK04761 22 PIEEADVIVALGGDG-------------FMLQTLHRYMNSG--KPVYGMNRGS 59 (246)
T ss_pred CcccCCEEEEECCCH-------------HHHHHHHHhcCCC--CeEEEEeCCC
Confidence 345789999988643 2566667665544 9999998874
No 214
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=41.03 E-value=1.3e+02 Score=27.61 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=21.2
Q ss_pred HHHHHcCCeEEEEecC----CC-HHHHHHhhc-ccceEEcCCCCccc
Q psy14047 37 KAVEASGARVAPIFIG----NP-EAYYRKILG-QVNGVLIPGGGASF 77 (350)
Q Consensus 37 ~~l~~~G~~~v~i~~~----~~-~~~~~~~l~-~~dGli~~GG~~dv 77 (350)
+.++.++..++...-. .+ .+.++.+.+ .++.|+-+||..++
T Consensus 108 ~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~~a 154 (248)
T PRK11572 108 KIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQDA 154 (248)
T ss_pred HHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCCCH
Confidence 4455566655554431 11 223333322 57888888887543
No 215
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=40.90 E-value=48 Score=30.37 Aligned_cols=29 Identities=7% Similarity=0.073 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 142 MIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 142 ~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
.+++.+++...+| .-|-|+-.|.-+|...
T Consensus 128 pl~~~ir~r~r~G--~avgGTSAGAavM~~~ 156 (293)
T COG4242 128 PLMAAIRQRVRRG--IAVGGTSAGAAVMSDH 156 (293)
T ss_pred HHHHHHHHHHhcC--ceecccccchhhcCCc
Confidence 3677788888888 9999999999888754
No 216
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=40.06 E-value=21 Score=31.94 Aligned_cols=21 Identities=33% Similarity=0.928 Sum_probs=14.7
Q ss_pred hhhHHHHhccCCEEEeCCCCC
Q psy14047 108 LLKIEKILGQVNGVLIPGGGA 128 (350)
Q Consensus 108 ~~~~~~~l~~~dgvIipG~g~ 128 (350)
.+.+...++.+||||+|||+.
T Consensus 49 ~~~~~~~l~~idGlll~GG~~ 69 (217)
T PF07722_consen 49 DEELDELLDRIDGLLLPGGGS 69 (217)
T ss_dssp HHHHHHHHHCSSEEEE---SS
T ss_pred HHHHHHHHhhcCEEEEcCCcc
Confidence 345778899999999999984
No 217
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=39.86 E-value=85 Score=25.65 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=26.7
Q ss_pred EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCC
Q psy14047 8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGN 53 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~ 53 (350)
+++|.+.+.. .+....+.....+.+++.|+.+-.+...+
T Consensus 3 ilii~gS~r~-------~~~t~~l~~~~~~~l~~~g~e~~~i~l~~ 41 (152)
T PF03358_consen 3 ILIINGSPRK-------NSNTRKLAEAVAEQLEEAGAEVEVIDLAD 41 (152)
T ss_dssp EEEEESSSST-------TSHHHHHHHHHHHHHHHTTEEEEEEECTT
T ss_pred EEEEECcCCC-------CCHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 4566666542 12355677778888888899988887654
No 218
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=39.73 E-value=1.6e+02 Score=26.83 Aligned_cols=46 Identities=15% Similarity=0.066 Sum_probs=30.2
Q ss_pred ccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCC
Q psy14047 28 KSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG 73 (350)
+.-+.....+.+++.|..+.......+.+. ++.++ .++|||++.+.
T Consensus 14 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (288)
T cd01538 14 WIRDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPV 64 (288)
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 566667788888889999888776544332 22222 36788877653
No 219
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=39.49 E-value=83 Score=26.21 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=24.9
Q ss_pred HHHHHHHcCCeEEEEecCC----------CHHHHHHhhcccceEEcCCCC
Q psy14047 35 YVKAVEASGARVAPIFIGN----------PEAYYRKILGQVNGVLIPGGG 74 (350)
Q Consensus 35 yv~~l~~~G~~~v~i~~~~----------~~~~~~~~l~~~dGli~~GG~ 74 (350)
+++.+.+.+..+.++-... +....+.++..+|.+++||..
T Consensus 23 ~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGsT 72 (147)
T PF04016_consen 23 LVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGST 72 (147)
T ss_dssp CHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEeee
Confidence 5667776777776665544 233455667777777777754
No 220
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=39.29 E-value=61 Score=30.69 Aligned_cols=45 Identities=22% Similarity=0.241 Sum_probs=35.4
Q ss_pred CCCCCC-EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCH
Q psy14047 2 EATERP-IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPE 55 (350)
Q Consensus 2 ~~~~~p-~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~ 55 (350)
+.+.++ +||||..|.. .+|-+-..+.+.+.+.|-+|-+|..+.+.
T Consensus 46 p~tG~a~viGITG~PGa---------GKSTli~~L~~~l~~~G~rVaVlAVDPSS 91 (323)
T COG1703 46 PRTGNAHVIGITGVPGA---------GKSTLIEALGRELRERGHRVAVLAVDPSS 91 (323)
T ss_pred hcCCCCcEEEecCCCCC---------chHHHHHHHHHHHHHCCcEEEEEEECCCC
Confidence 346665 9999998864 25666778888999999999999987654
No 221
>PRK10342 glycerate kinase I; Provisional
Probab=38.69 E-value=33 Score=33.51 Aligned_cols=51 Identities=22% Similarity=0.328 Sum_probs=29.9
Q ss_pred hhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHH
Q psy14047 108 LLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLG 165 (350)
Q Consensus 108 ~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G 165 (350)
...+++.++++| +||+|-|..+. .+..-+.-..+.+.++++ + +|++.||--
T Consensus 275 ~~~l~~~l~~AD-LVITGEG~~D~-QTl~GK~p~gVa~~A~~~---~--vPviai~G~ 325 (381)
T PRK10342 275 ALNLEEHIHDCT-LVITGEGRIDS-QSIHGKVPIGVANVAKKY---H--KPVIGIAGS 325 (381)
T ss_pred hcCHHHHhccCC-EEEECCCcCcc-cccCCccHHHHHHHHHHh---C--CCEEEEecc
Confidence 345778899999 56677666543 222222211244445443 3 999999943
No 222
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.48 E-value=2e+02 Score=25.68 Aligned_cols=45 Identities=13% Similarity=0.042 Sum_probs=29.0
Q ss_pred ccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCC
Q psy14047 28 KSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPG 72 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~G 72 (350)
+.-+.....+++++.|..++......+.+. ++.+. .++|||++.+
T Consensus 14 ~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~ 63 (282)
T cd06318 14 FAALTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINP 63 (282)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 566677788888999998876655444322 22222 3678888764
No 223
>PLN02929 NADH kinase
Probab=38.38 E-value=63 Score=30.55 Aligned_cols=20 Identities=10% Similarity=0.474 Sum_probs=13.2
Q ss_pred HHHHHHHHhhCCCCccEEEehHH
Q psy14047 143 IYKIAKEFNENRDYFPIMGICLG 165 (350)
Q Consensus 143 l~~~i~~~~~~g~~~PIlGIC~G 165 (350)
++..++.. ..+ +||+||=.|
T Consensus 77 ~L~aa~~~-~~~--iPvlGIN~G 96 (301)
T PLN02929 77 LLQASHFL-DDS--IPVLGVNSD 96 (301)
T ss_pred HHHHHHHc-CCC--CcEEEEECC
Confidence 34445544 333 999999887
No 224
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.25 E-value=2.1e+02 Score=25.41 Aligned_cols=60 Identities=17% Similarity=0.203 Sum_probs=37.2
Q ss_pred EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHH----HHHHhh-cccceEEcCCCC
Q psy14047 8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEA----YYRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~----~~~~~l-~~~dGli~~GG~ 74 (350)
+|||...... ...+.-+.....+.+++.|..++......+.+ .++.+. .++||+++.++.
T Consensus 1 ~Igvv~~~~~-------~~~~~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~ 65 (269)
T cd06281 1 TIGCLVSDIT-------NPLLAQLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGD 65 (269)
T ss_pred CEEEEecCCc-------cccHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCC
Confidence 4777764321 12255566777888999999987665544432 233333 478999987653
No 225
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=37.57 E-value=39 Score=32.96 Aligned_cols=50 Identities=26% Similarity=0.366 Sum_probs=28.9
Q ss_pred hhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehH
Q psy14047 108 LLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICL 164 (350)
Q Consensus 108 ~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~ 164 (350)
...+++.++++| +||+|-|..+. .+..-+.-..+.+.++++ + +|++.||-
T Consensus 274 ~~~l~~~l~~AD-lVITGEG~~D~-Qtl~GK~p~~Va~~A~~~---~--vPviai~G 323 (375)
T TIGR00045 274 LLDLEQKIKDAD-LVITGEGRLDR-QSLMGKAPVGVAKRAKKY---G--VPVIAIAG 323 (375)
T ss_pred hhCHHHHhcCCC-EEEECCCcccc-cccCCchHHHHHHHHHHh---C--CeEEEEec
Confidence 345778899999 56677666543 222222211244444443 3 99999994
No 226
>PRK00784 cobyric acid synthase; Provisional
Probab=37.43 E-value=32 Score=34.80 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=27.6
Q ss_pred HHHHHHHH-cCCeEEEEecCCCHHHHHHhhcccceEEcCCCCc
Q psy14047 34 SYVKAVEA-SGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGA 75 (350)
Q Consensus 34 ~yv~~l~~-~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~ 75 (350)
+-++.|++ +|+.++.++... .+..+|||+||||..
T Consensus 266 ~nl~~l~~~~g~~v~~~s~~~-------~l~~~d~lilpGg~~ 301 (488)
T PRK00784 266 TDFDPLRAEPGVDVRYVRPGE-------PLPDADLVILPGSKN 301 (488)
T ss_pred cChHHHhhcCCCeEEEECCcc-------ccccCCEEEECCccc
Confidence 55788888 999988887532 256899999999984
No 227
>PRK09932 glycerate kinase II; Provisional
Probab=37.16 E-value=37 Score=33.22 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=29.7
Q ss_pred hhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHH
Q psy14047 108 LLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLG 165 (350)
Q Consensus 108 ~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G 165 (350)
...+++.++.+| +||+|-|..+. .+..-+.-..+.+.++++ + +|++.||--
T Consensus 275 ~~~l~~~l~~AD-lVITGEG~~D~-Qt~~GK~p~~Va~~A~~~---~--~Pvi~i~G~ 325 (381)
T PRK09932 275 AVNLEQAVQGAA-LVITGEGRIDS-QTAGGKAPLGVASVAKQF---N--VPVIGIAGV 325 (381)
T ss_pred hcChHHHhccCC-EEEECCCcccc-cccCCccHHHHHHHHHHc---C--CCEEEEecc
Confidence 345778899999 56677666543 122222111244444443 3 999999943
No 228
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=36.93 E-value=62 Score=29.08 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=33.1
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCcc
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNEN 177 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v 177 (350)
.++|++|+.== .|+ +++.+++.. .+|++|||.-.-+.+...|.++
T Consensus 68 ~GvdaiiIaCf------~DP-------gl~~~Re~~----~~PviGi~eAsv~~A~~vgrrf 112 (230)
T COG4126 68 QGVDAIIIACF------SDP-------GLAAARERA----AIPVIGICEASVLAALFVGRRF 112 (230)
T ss_pred cCCcEEEEEec------CCh-------HHHHHHHHh----CCCceehhHHHHHHHHHhcceE
Confidence 46999998421 111 566778765 2999999999999998888764
No 229
>PTZ00300 pyruvate kinase; Provisional
Probab=36.24 E-value=2.1e+02 Score=28.81 Aligned_cols=108 Identities=14% Similarity=0.173 Sum_probs=60.7
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047 32 PASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI 111 (350)
Q Consensus 32 ~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (350)
+...+++..+.|+.-+.+|...+.+++.++.+.+.. .|. ++ ..+..|..+. ..+++
T Consensus 149 D~~dI~~ald~gvd~I~~SfVrsaeDv~~vr~~l~~----~~~-~~----------~IiaKIEt~e---------av~nl 204 (454)
T PTZ00300 149 DCADLQFGVEQGVDMIFASFIRSAEQVGEVRKALGA----KGG-DI----------MIICKIENHQ---------GVQNI 204 (454)
T ss_pred hHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHh----cCC-Cc----------eEEEEECCHH---------HHHhH
Confidence 355577888899999999999998877665444411 111 11 2333333333 24467
Q ss_pred HHHhccCCEEEe-CCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHH
Q psy14047 112 EKILGQVNGVLI-PGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLY 171 (350)
Q Consensus 112 ~~~l~~~dgvIi-pG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~ 171 (350)
.++++.+|||++ +|-=+........... ..+.++.+.+.| +|++=-. |+|-.
T Consensus 205 deI~~~~DgImVaRGDLgvei~~e~vp~~---Qk~Ii~~~~~~g--kpvI~AT---QmLeS 257 (454)
T PTZ00300 205 DSIIEESDGIMVARGDLGVEIPAEKVVVA---QKILISKCNVAG--KPVICAT---QMLES 257 (454)
T ss_pred HHHHHhCCEEEEecchhhhhcChHHHHHH---HHHHHHHHHHcC--CCEEEEC---chHHH
Confidence 788999999999 6621111111122222 223344455556 8987543 55543
No 230
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.76 E-value=38 Score=31.24 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=25.3
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHH
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGF 166 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~ 166 (350)
+++|.+|.-||.. .++..++.+...+ +||+||=.|.
T Consensus 32 ~~~D~vi~iGGDG-------------T~L~a~~~~~~~~--iPilGIN~G~ 67 (259)
T PRK00561 32 DGADYLFVLGGDG-------------FFVSTAANYNCAG--CKVVGINTGH 67 (259)
T ss_pred CCCCEEEEECCcH-------------HHHHHHHHhcCCC--CcEEEEecCC
Confidence 5679999988643 2556666655444 9999998873
No 231
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=35.52 E-value=33 Score=30.35 Aligned_cols=37 Identities=30% Similarity=0.320 Sum_probs=28.0
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCc
Q psy14047 32 PASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGA 75 (350)
Q Consensus 32 ~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~ 75 (350)
..|..++|+++|+.+++.. +.+. +.+-|+|++||=++
T Consensus 14 L~Sv~~Aler~G~~~~vs~---d~~~----i~~AD~liLPGVGa 50 (204)
T COG0118 14 LRSVKKALERLGAEVVVSR---DPEE----ILKADKLILPGVGA 50 (204)
T ss_pred HHHHHHHHHHcCCeeEEec---CHHH----HhhCCEEEecCCCC
Confidence 3677899999998876654 3333 56799999999773
No 232
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=35.21 E-value=2.4e+02 Score=24.99 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=30.0
Q ss_pred ccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCC
Q psy14047 28 KSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG 73 (350)
+.-+.....+++++.|..++......+.+. ++.++ .++|||++..+
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~ 64 (273)
T cd06305 14 DQAYLAGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHG 64 (273)
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 445567778889999999887655444332 22222 37899998654
No 233
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=34.12 E-value=53 Score=29.41 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=14.6
Q ss_pred HHHHHHHHcCCeEEEEecC
Q psy14047 34 SYVKAVEASGARVAPIFIG 52 (350)
Q Consensus 34 ~yv~~l~~~G~~~v~i~~~ 52 (350)
.-++.|+++|..+..+...
T Consensus 24 ~P~~~L~~aG~~V~~aSp~ 42 (217)
T PRK11780 24 LTLLALDRAGAEAVCFAPD 42 (217)
T ss_pred HHHHHHHHCCCEEEEEeCC
Confidence 3467899999998887753
No 234
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=34.11 E-value=41 Score=29.89 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCc
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGA 75 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~ 75 (350)
.+.+++|+..|..++.+. +.+. +...|+||+||+..
T Consensus 13 ~s~~~al~~~~~~~~~~~---~~~~----l~~~d~iIlPG~g~ 48 (210)
T PRK14004 13 HSCLKAVSLYTKDFVFTS---DPET----IENSKALILPGDGH 48 (210)
T ss_pred HHHHHHHHHcCCeEEEEC---CHHH----hccCCEEEECCCCc
Confidence 677899999999877663 2222 46899999999983
No 235
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=34.09 E-value=61 Score=27.06 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=23.8
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEE-EEec
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVA-PIFI 51 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v-~i~~ 51 (350)
.++|+|||.+-.... . ...-+ ..-.++|+.+|+.-+ .++.
T Consensus 88 f~~pvIGVITK~Dl~---~----~~~~i-~~a~~~L~~aG~~~if~vS~ 128 (143)
T PF10662_consen 88 FNKPVIGVITKIDLP---S----DDANI-ERAKKWLKNAGVKEIFEVSA 128 (143)
T ss_pred cCCCEEEEEECccCc---c----chhhH-HHHHHHHHHcCCCCeEEEEC
Confidence 568999999976431 0 00111 223378999999853 4443
No 236
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=33.94 E-value=1.3e+02 Score=29.15 Aligned_cols=95 Identities=19% Similarity=0.167 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCeEEEEecCC--CHHHHHH---hhcccceE-----EcCCCCcc---cccCCcccccceeeeecccchhh
Q psy14047 33 ASYVKAVEASGARVAPIFIGN--PEAYYRK---ILGQVNGV-----LIPGGGAS---FYADDGYAKAGAMIYKIAKEVSY 99 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~--~~~~~~~---~l~~~dGl-----i~~GG~~d---v~~~~~~~~~~~~~~~~~~~~~~ 99 (350)
++.++.|++.|+....|.... +.+.+.. ....+.+. +-+.-+.- ..+..-.....+++|++.|.++.
T Consensus 115 RaLtr~iR~~G~m~~~I~~~~~~~~~~~~~~~~~~~~~~~~dlv~~VSt~~~~~~~~~~~~~~~~~~Vv~iD~GvK~nIl 194 (368)
T COG0505 115 RALTRKIREKGAMKGVIATGPELDPAKLLERARAFPGILGTDLVKEVSTKEPYTWPGLNGGGEPGKHVVVIDFGVKRNIL 194 (368)
T ss_pred HHHHHHHHhcCCcceEeecCcccChHHHHHHHhhcCCCCcccccceeecCCceeccccccCCCCCcEEEEEEcCccHHHH
Confidence 577899999999987776653 2221111 11222222 11211110 00000001234889999999999
Q ss_pred hhHHHhhh-------hhhHHHHhc-cCCEEEe-CCCC
Q psy14047 100 RELDIWQS-------LLKIEKILG-QVNGVLI-PGGG 127 (350)
Q Consensus 100 ~~~~~~~~-------~~~~~~~l~-~~dgvIi-pG~g 127 (350)
|++..+++ +....++++ +.|||++ .|+|
T Consensus 195 r~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNGPG 231 (368)
T COG0505 195 RELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPG 231 (368)
T ss_pred HHHHHCCCeEEEEcCCCCHHHHHhhCCCEEEEeCCCC
Confidence 99986663 556667664 7899999 5543
No 237
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=33.05 E-value=2.2e+02 Score=25.14 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=36.0
Q ss_pred EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHH----HHHHhhc-ccceEEcCCC
Q psy14047 8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEA----YYRKILG-QVNGVLIPGG 73 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~----~~~~~l~-~~dGli~~GG 73 (350)
+|||...... ...+.-+.....+.+++.|..++......+.+ .++.+.. ++||+++.+.
T Consensus 1 ~i~vv~p~~~-------~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd06273 1 TIGAIVPTLD-------NAIFARVIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGL 64 (268)
T ss_pred CeEEEeCCCC-------CchHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4777774221 12244455677788888999888765544433 2233444 5899998754
No 238
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=32.72 E-value=1.1e+02 Score=26.31 Aligned_cols=48 Identities=27% Similarity=0.387 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCeEEEEecC-CCHHHHHH----hhcc-cceEEcCCCCcccccCC
Q psy14047 33 ASYVKAVEASGARVAPIFIG-NPEAYYRK----ILGQ-VNGVLIPGGGASFYADD 81 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~-~~~~~~~~----~l~~-~dGli~~GG~~dv~~~~ 81 (350)
...+++|+++|..+...... .+.+.+.. +.+. +|.|+.+||- -+.|+|
T Consensus 30 ~~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGT-G~t~RD 83 (169)
T COG0521 30 PLLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGT-GITPRD 83 (169)
T ss_pred hHHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCc-cCCCCc
Confidence 56779999999987322222 23333433 2333 8999999997 465544
No 239
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.53 E-value=2.7e+02 Score=24.73 Aligned_cols=47 Identities=13% Similarity=0.026 Sum_probs=30.4
Q ss_pred ccchhHHHHHHHHHcCCeEEEEecC--CCHHH----HHHhh-cccceEEcCCCC
Q psy14047 28 KSYIPASYVKAVEASGARVAPIFIG--NPEAY----YRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i~~~--~~~~~----~~~~l-~~~dGli~~GG~ 74 (350)
+..+.....+++++.|..+..+... .+.+. ++.++ .++|||++.+..
T Consensus 14 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~ 67 (273)
T cd06310 14 WQAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTD 67 (273)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 5666777888899999998877532 23322 22222 368999987543
No 240
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=32.49 E-value=2.5e+02 Score=25.11 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=18.1
Q ss_pred hHHHHHHHHHcCCeEEEEecCCC
Q psy14047 32 PASYVKAVEASGARVAPIFIGNP 54 (350)
Q Consensus 32 ~~~yv~~l~~~G~~~v~i~~~~~ 54 (350)
+..|++.+.++|+..+.+....+
T Consensus 70 p~~~i~~~~~~gad~i~~H~Ea~ 92 (220)
T PRK08883 70 VDRIIPDFAKAGASMITFHVEAS 92 (220)
T ss_pred HHHHHHHHHHhCCCEEEEcccCc
Confidence 56788888888998888888644
No 241
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=32.13 E-value=1.3e+02 Score=29.08 Aligned_cols=89 Identities=22% Similarity=0.223 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHh---hcccceEEcCCCCcccccCCcc-----cccceeeeecccchhhhhHHH
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKI---LGQVNGVLIPGGGASFYADDGY-----AKAGAMIYKIAKEVSYRELDI 104 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~---l~~~dGli~~GG~~dv~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 104 (350)
++.++.|++.|.....|....+.+....+ +...|.+ ..|.+...+ ....+++|++.+.+..+.+..
T Consensus 114 R~lt~~lR~~G~~~~~i~~~~~~~~~~~~~~~~~~~~~v------~~vs~~~~~~~~~~~~~V~viD~G~k~ni~~~L~~ 187 (354)
T PRK12838 114 RALVKHIREKGTMKASITTTDDAHAFDQIKALVLPKNVV------AQVSTKEPYTYGNGGKHVALIDFGYKKSILRSLSK 187 (354)
T ss_pred HHHHHHHHHcCCceEEEecCCcHHHHHHHHhhhccCCcc------cEEEcCCCEEeCCCCCEEEEECCCHHHHHHHHHHH
Confidence 67789999999998877764433222221 1111211 001111111 133477888888777776643
Q ss_pred hhh-------hhhHHHHh-ccCCEEEeCCCC
Q psy14047 105 WQS-------LLKIEKIL-GQVNGVLIPGGG 127 (350)
Q Consensus 105 ~~~-------~~~~~~~l-~~~dgvIipG~g 127 (350)
.+. ..+..+.. .++||||++||.
T Consensus 188 ~G~~v~vvp~~~~~~~i~~~~~DGIiLsgGP 218 (354)
T PRK12838 188 RGCKVTVLPYDTSLEEIKNLNPDGIVLSNGP 218 (354)
T ss_pred CCCeEEEEECCCCHHHHhhcCCCEEEEcCCC
Confidence 221 12222222 379999997664
No 242
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=32.05 E-value=1.2e+02 Score=26.99 Aligned_cols=11 Identities=36% Similarity=0.697 Sum_probs=6.1
Q ss_pred CCCEEEEEccC
Q psy14047 5 ERPIIGILTQE 15 (350)
Q Consensus 5 ~~p~Igi~~~~ 15 (350)
.+|.|+|....
T Consensus 104 ~~~~i~i~~~a 114 (247)
T PF01075_consen 104 DKPYIGINPGA 114 (247)
T ss_dssp TSSEEEEE---
T ss_pred cCCeEEEeecC
Confidence 56888887544
No 243
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.47 E-value=2.7e+02 Score=24.65 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=28.4
Q ss_pred ccchhHHHHHHHHHcCCeEEEEecCCCHHHH----HHhh-cccceEEcCCC
Q psy14047 28 KSYIPASYVKAVEASGARVAPIFIGNPEAYY----RKIL-GQVNGVLIPGG 73 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~----~~~l-~~~dGli~~GG 73 (350)
+.-+.....+++++.|..++......+.+.- ..++ ..+||+++.+.
T Consensus 15 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (275)
T cd06317 15 QTTYNKAFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPT 65 (275)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5555667777888899887766554443222 2222 36788887654
No 244
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=31.16 E-value=2.4e+02 Score=25.16 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=29.6
Q ss_pred ccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCC
Q psy14047 28 KSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG 73 (350)
+.-+.....++.++.|..++......+.+. ++.++ .++|||++.+.
T Consensus 14 ~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06309 14 RTAETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPV 64 (273)
T ss_pred HHHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 455667778888889998887765544322 22322 35788887654
No 245
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=31.13 E-value=3.3e+02 Score=24.20 Aligned_cols=66 Identities=23% Similarity=0.425 Sum_probs=37.8
Q ss_pred CEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHcCCeEEEEecCCC-HHHHHHhh--cccceEEcCCC
Q psy14047 7 PIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEASGARVAPIFIGNP-EAYYRKIL--GQVNGVLIPGG 73 (350)
Q Consensus 7 p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~-~~~~~~~l--~~~dGli~~GG 73 (350)
-+|||....... .+..+... +..+....-+.+++.|..+........ ...+.+.+ .++|||++.+.
T Consensus 4 ~~i~vi~p~~~~-~~~~~~~~~~~~~~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~ 73 (275)
T cd06295 4 DTIALVVPEPHE-RDQSFSDPFFLSLLGGIADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQ 73 (275)
T ss_pred eEEEEEecCccc-cccccCCchHHHHHHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCC
Confidence 478888732110 00012222 444555667778888988877765443 33444444 47999998754
No 246
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=31.11 E-value=3.9e+02 Score=24.27 Aligned_cols=61 Identities=13% Similarity=0.080 Sum_probs=37.2
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCC
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG 73 (350)
+-+|||...... ..++.-+....-+.+++.|..++......+.+. ++.+. .++||+++.+.
T Consensus 26 ~~~I~vi~~~~~-------~~f~~~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~ 91 (295)
T PRK10653 26 KDTIALVVSTLN-------NPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 91 (295)
T ss_pred CCeEEEEecCCC-------ChHHHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 468998863221 122555667777888899988877655434322 22322 36888888653
No 247
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=30.51 E-value=86 Score=28.01 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=42.1
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCC--HHHHHHhhcccceEEcCCCCcccc
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNP--EAYYRKILGQVNGVLIPGGGASFY 78 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~--~~~~~~~l~~~dGli~~GG~~dv~ 78 (350)
+..|+|.|+..... . -.-..+++|-+.|...+-|++..+ .+.++.+-+..-.+++-=|. -++
T Consensus 11 ~~~~vI~Vlr~~~~----------e--~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGT-VL~ 74 (211)
T COG0800 11 KAQPVVPVIRGDDV----------E--EALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGT-VLN 74 (211)
T ss_pred HHCCeeEEEEeCCH----------H--HHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEcccc-ccC
Confidence 34689999876542 1 135678999999999999999876 35566655555555555444 354
No 248
>PRK03673 hypothetical protein; Provisional
Probab=30.09 E-value=1.2e+02 Score=29.83 Aligned_cols=39 Identities=8% Similarity=-0.041 Sum_probs=27.2
Q ss_pred HHHHHHcCCeEEEEecC-CCHHHHHH----hhcccceEEcCCCC
Q psy14047 36 VKAVEASGARVAPIFIG-NPEAYYRK----ILGQVNGVLIPGGG 74 (350)
Q Consensus 36 v~~l~~~G~~~v~i~~~-~~~~~~~~----~l~~~dGli~~GG~ 74 (350)
.+.+.+.|..+..+... .+.+.+.+ .++..|-||++||-
T Consensus 27 a~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGl 70 (396)
T PRK03673 27 ADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGL 70 (396)
T ss_pred HHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCC
Confidence 46688899998755544 34444443 45678999999996
No 249
>PLN02727 NAD kinase
Probab=30.01 E-value=82 Score=34.41 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=25.1
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHH
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGF 166 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~ 166 (350)
+.+|.||.-||.. -++..++.+...+ +|||||=+|.
T Consensus 742 ~~~DLVIvLGGDG-------------TlLrAar~~~~~~--iPILGINlGr 777 (986)
T PLN02727 742 ERVDFVACLGGDG-------------VILHASNLFRGAV--PPVVSFNLGS 777 (986)
T ss_pred cCCCEEEEECCcH-------------HHHHHHHHhcCCC--CCEEEEeCCC
Confidence 4689999988643 1455566654444 9999998874
No 250
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=29.43 E-value=3.4e+02 Score=27.23 Aligned_cols=21 Identities=14% Similarity=-0.088 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCeEEEEecCC
Q psy14047 33 ASYVKAVEASGARVAPIFIGN 53 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~ 53 (350)
.+-+++|.+.|+.+...-...
T Consensus 20 ~a~a~~L~~~G~~v~v~D~~~ 40 (448)
T COG0771 20 LAAARFLLKLGAEVTVSDDRP 40 (448)
T ss_pred HHHHHHHHHCCCeEEEEcCCC
Confidence 567789999998766654333
No 251
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.36 E-value=2.8e+02 Score=24.46 Aligned_cols=59 Identities=7% Similarity=0.076 Sum_probs=35.5
Q ss_pred EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHH----HHHHhh-cccceEEcCCC
Q psy14047 8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEA----YYRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~----~~~~~l-~~~dGli~~GG 73 (350)
+|||...... ..++.-+....-+.+++.|..+.......+.+ .++.++ .++||+++.+.
T Consensus 1 ~i~~~~~~~~-------~~~~~~~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06322 1 VIGASLLTQQ-------HPFYIELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPV 64 (267)
T ss_pred CeeEeecCcc-------cHHHHHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 5777774321 12355566777888888998887665543332 122222 36889888653
No 252
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=29.31 E-value=2.2e+02 Score=28.14 Aligned_cols=47 Identities=13% Similarity=0.066 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCeEEEEecCCC-HHH----HHHhhcccceEEcCCCCcccccCC
Q psy14047 34 SYVKAVEASGARVAPIFIGNP-EAY----YRKILGQVNGVLIPGGGASFYADD 81 (350)
Q Consensus 34 ~yv~~l~~~G~~~v~i~~~~~-~~~----~~~~l~~~dGli~~GG~~dv~~~~ 81 (350)
...+++++.|..+.......| .+. +...++..|-||++||- ...++|
T Consensus 24 ~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGl-gpt~dD 75 (413)
T TIGR00200 24 WLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGL-GPTSDD 75 (413)
T ss_pred HHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCC-CCCCcc
Confidence 344778999999875554333 333 34455678999999986 344333
No 253
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=29.28 E-value=1.6e+02 Score=26.99 Aligned_cols=61 Identities=16% Similarity=0.274 Sum_probs=41.2
Q ss_pred CEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHH---HHhh-cccceEEcCCCC
Q psy14047 7 PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYY---RKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 7 p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~---~~~l-~~~dGli~~GG~ 74 (350)
.+|||.-.... ...+.-+....-+.+++.|-.++.+....+.+.- +.++ .++||||+.+-.
T Consensus 2 ~~IGvivp~~~-------npff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~ 66 (279)
T PF00532_consen 2 KTIGVIVPDIS-------NPFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASSE 66 (279)
T ss_dssp CEEEEEESSST-------SHHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESSS
T ss_pred CEEEEEECCCC-------CcHHHHHHHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEeccc
Confidence 57898875542 1225556777788888899999888876664322 2222 479999999543
No 254
>PRK03670 competence damage-inducible protein A; Provisional
Probab=29.11 E-value=2.4e+02 Score=25.88 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=27.0
Q ss_pred HHHHHHHHcCCeEEEEecCCC-HHHHHHh----hc-ccceEEcCCCC
Q psy14047 34 SYVKAVEASGARVAPIFIGNP-EAYYRKI----LG-QVNGVLIPGGG 74 (350)
Q Consensus 34 ~yv~~l~~~G~~~v~i~~~~~-~~~~~~~----l~-~~dGli~~GG~ 74 (350)
...++|.+.|..+..+....+ .+.+.+. +. ..|-|+++||-
T Consensus 24 ~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGl 70 (252)
T PRK03670 24 FIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGL 70 (252)
T ss_pred HHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCc
Confidence 345779999999876555443 3444333 34 36889999886
No 255
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=29.00 E-value=1.6e+02 Score=25.97 Aligned_cols=46 Identities=11% Similarity=0.113 Sum_probs=31.2
Q ss_pred ccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCC
Q psy14047 28 KSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG 73 (350)
+.-+....-+++++.|..++.+....+.+. ++.++ .++||+++.+.
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~ 64 (259)
T cd01542 14 TSRTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLAT 64 (259)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 455667777888889999887766544332 33333 47999999864
No 256
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=28.79 E-value=2.4e+02 Score=27.31 Aligned_cols=94 Identities=17% Similarity=0.120 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCeEEEEecCC-CHHHHHHhh---ccc---ceE--EcCCCCcccccC-Cccc-ccceeeeecccchhhhh
Q psy14047 33 ASYVKAVEASGARVAPIFIGN-PEAYYRKIL---GQV---NGV--LIPGGGASFYAD-DGYA-KAGAMIYKIAKEVSYRE 101 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l---~~~---dGl--i~~GG~~dv~~~-~~~~-~~~~~~~~~~~~~~~~~ 101 (350)
++.++.|++.|+....|.... +.+.....+ ... |-+ +-+.-+. ..+. ..+. ...+++|++.+.+..+.
T Consensus 112 R~lt~~iR~~G~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~vs~~~~~-~~~~~~~~~~~~i~viD~G~k~ni~~~ 190 (358)
T TIGR01368 112 RALVKKIREKGTMKGVISTEDSNDEELVQKASVSPDIDGINLVAEVSTKEPY-TWGQKRGGKKKRVVVIDFGVKQNILRR 190 (358)
T ss_pred HHHHHHHHhcCCeeEEEecCCCChHHHHHHHHhCCCCccCCccceeccCCCE-EeCCCCCCCccEEEEEeCCcHHHHHHH
Confidence 678999999999988886643 222222111 111 211 2221111 1100 0011 23588999999887777
Q ss_pred HHHhhh-------hhhHHHHhc-cCCEEEeCCCC
Q psy14047 102 LDIWQS-------LLKIEKILG-QVNGVLIPGGG 127 (350)
Q Consensus 102 ~~~~~~-------~~~~~~~l~-~~dgvIipG~g 127 (350)
+...+. ...+++..+ .+||||++||.
T Consensus 191 L~~~G~~v~vvp~~~~~~~i~~~~pDGIiLSgGP 224 (358)
T TIGR01368 191 LVKRGCEVTVVPYDTDAEEIKKYNPDGIFLSNGP 224 (358)
T ss_pred HHHCCCEEEEEcCCCCHHHHHhhCCCEEEECCCC
Confidence 653321 222333333 35999997764
No 257
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=28.27 E-value=2e+02 Score=25.46 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=37.4
Q ss_pred EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhh-----cccceEEcCCCC
Q psy14047 8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKIL-----GQVNGVLIPGGG 74 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l-----~~~dGli~~GG~ 74 (350)
+|||...... ..++.-+.....+++++.|..+.......+.+...+++ .++|||++.+..
T Consensus 1 ~igvi~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 65 (264)
T cd06274 1 TIGLIIPDLE-------NRSFARIAKRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGSL 65 (264)
T ss_pred CEEEEecccc-------CchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 3677764321 12355566677788888999988777654443222222 478999998653
No 258
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=28.24 E-value=67 Score=33.00 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCc
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGA 75 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~ 75 (350)
.+..+++++.|..+..++. .+ -++.+|+|+|||+..
T Consensus 20 ~sl~~al~~~G~~v~~v~~---~~----~l~~~D~lIlpG~gs 55 (538)
T PLN02617 20 RSVRNAIRHLGFTIKDVQT---PE----DILNADRLIFPGVGA 55 (538)
T ss_pred HHHHHHHHHCCCeEEEECC---hh----hhccCCEEEECCCCC
Confidence 6778999999999877763 22 257899999999873
No 259
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=28.13 E-value=3.9e+02 Score=23.03 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=38.1
Q ss_pred EEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCCC
Q psy14047 9 IGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 9 Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG~ 74 (350)
||+...... ...+..+....-++++..|...+.++...+.+. ++.++ .++||+|+.+..
T Consensus 2 ig~v~~~~~-------~~~~~~~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~ 65 (264)
T cd01537 2 IGVLVPDLD-------NPFFAQVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSD 65 (264)
T ss_pred eEEEEcCCC-------ChHHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 677774321 122455667777888889998888877655432 33333 378999987654
No 260
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=28.11 E-value=43 Score=31.10 Aligned_cols=19 Identities=37% Similarity=0.877 Sum_probs=16.1
Q ss_pred hHHHHhccCCEEEeCCCCC
Q psy14047 110 KIEKILGQVNGVLIPGGGA 128 (350)
Q Consensus 110 ~~~~~l~~~dgvIipG~g~ 128 (350)
.+++.++.+||||+|||+.
T Consensus 47 ~l~~~l~~~dG~l~~Gg~~ 65 (273)
T cd01747 47 YYDKLFKSINGILFPGGAV 65 (273)
T ss_pred HHHHHHhhCCEEEECCCCC
Confidence 4667789999999999875
No 261
>KOG3974|consensus
Probab=28.06 E-value=4.1e+02 Score=24.78 Aligned_cols=93 Identities=27% Similarity=0.339 Sum_probs=53.3
Q ss_pred ccchhHHHHHHHHH--cCCeEEEEecCCCHH-HHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHH
Q psy14047 28 KSYIPASYVKAVEA--SGARVAPIFIGNPEA-YYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDI 104 (350)
Q Consensus 28 ~~~i~~~yv~~l~~--~G~~~v~i~~~~~~~-~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (350)
..|.-+.|..++.+ .|+...-|.+..+.. .+..+ ..|-++.|.=. .+..
T Consensus 40 ~eYTGAPYFaa~sa~~~GaDL~HiFCe~~Aa~vIKsY--sPdLIVHP~l~-------------------------~~~a- 91 (306)
T KOG3974|consen 40 LEYTGAPYFAAISALRVGADLSHIFCEPEAAVVIKSY--SPDLIVHPVLD-------------------------QENA- 91 (306)
T ss_pred ccccCccHHHHHHHHHhccceeeeeechhHHHHHhhc--CCceeeccccc-------------------------CCch-
Confidence 45566778777776 499998888864432 22222 33455544321 0100
Q ss_pred hhhhhhHHHHhccCCEEEe-CCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEE
Q psy14047 105 WQSLLKIEKILGQVNGVLI-PGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIM 160 (350)
Q Consensus 105 ~~~~~~~~~~l~~~dgvIi-pG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIl 160 (350)
.+.+++.|...+++++ ||-|.. ..+-+..+.+++++++. ++|+.
T Consensus 92 ---v~~i~k~L~RlhavVIGPGLGRd----p~~~k~i~~iley~~~~-----dvP~V 136 (306)
T KOG3974|consen 92 ---VDIIEKLLQRLHAVVIGPGLGRD----PAILKEIAKILEYLRGK-----DVPLV 136 (306)
T ss_pred ---HhHHHHHHhheeEEEECCCCCCC----HHHHHHHHHHHHHHhcC-----CCcEE
Confidence 2345667889999999 998762 22223222455555542 39986
No 262
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=28.01 E-value=41 Score=29.25 Aligned_cols=15 Identities=33% Similarity=0.944 Sum_probs=12.6
Q ss_pred HHhccCCEEEeCCCC
Q psy14047 113 KILGQVNGVLIPGGG 127 (350)
Q Consensus 113 ~~l~~~dgvIipG~g 127 (350)
++++++|+||+||+.
T Consensus 34 ~~l~~~dgiii~GG~ 48 (189)
T PRK13525 34 EDLDEIDGLILPGGE 48 (189)
T ss_pred hHhccCCEEEECCCC
Confidence 457889999999973
No 263
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=27.70 E-value=4.5e+02 Score=23.79 Aligned_cols=29 Identities=24% Similarity=0.125 Sum_probs=15.5
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHh
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKI 61 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~ 61 (350)
...++.|.+.|..++.+...++.+..+.+
T Consensus 143 ~~l~~~l~~~~~~ivl~g~~~e~~~~~~i 171 (279)
T cd03789 143 AALADRLLARGARVVLTGGPAERELAEEI 171 (279)
T ss_pred HHHHHHHHHCCCEEEEEechhhHHHHHHH
Confidence 44556666667777766543333333443
No 264
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=27.62 E-value=3.8e+02 Score=23.17 Aligned_cols=47 Identities=13% Similarity=0.132 Sum_probs=31.8
Q ss_pred ccchhHHHHHHHHHcCCeEEEEecCCCHH----HHHHhh-cccceEEcCCCC
Q psy14047 28 KSYIPASYVKAVEASGARVAPIFIGNPEA----YYRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~~~----~~~~~l-~~~dGli~~GG~ 74 (350)
+..+.....+++.+.|..++......+.+ .++.+. .++|||++.+..
T Consensus 14 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~ 65 (264)
T cd06267 14 FAELLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSR 65 (264)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCC
Confidence 55566777778888898888777765532 223333 478999987765
No 265
>KOG2585|consensus
Probab=27.47 E-value=3.1e+02 Score=27.33 Aligned_cols=61 Identities=15% Similarity=0.213 Sum_probs=41.6
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCC-H-HHHHHhhcccceEEcCCCC
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNP-E-AYYRKILGQVNGVLIPGGG 74 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~-~-~~~~~~l~~~dGli~~GG~ 74 (350)
+.+|+|.|+|-+... + +.. ..-.+.|...|-.+++.-...+ . +.++.+..++++..++-..
T Consensus 264 ~~~P~V~Ilcgpgnn---g---gdg----~v~gRHL~~~G~~~vi~~pk~s~~~~~~~~L~~q~~~~~Ip~v~ 326 (453)
T KOG2585|consen 264 HQWPLVAILCGPGNN---G---GDG----LVCGRHLAQHGYTPVIYYPKRSLNVDLYKSLVKQCDGFSIPSVS 326 (453)
T ss_pred CCCceEEEEeCCCCc---c---chh----HHHHHHHHHcCceeEEEeecCccchhHHHHHHHHhcCccccccc
Confidence 346999999988752 1 111 1134788899988766655433 3 5667788999999988655
No 266
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=27.41 E-value=52 Score=30.36 Aligned_cols=101 Identities=27% Similarity=0.369 Sum_probs=67.7
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcc
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGY 83 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~ 83 (350)
|+++.|+|+.-+.. .. ..+.+++++++|+.+..++.... . +.
T Consensus 1 ~~~~kvaVl~~pG~---n~---------d~e~~~Al~~aG~~v~~v~~~~~----------------~----~~------ 42 (261)
T PRK01175 1 MESIRVAVLRMEGT---NC---------EDETVKAFRRLGVEPEYVHINDL----------------A----AE------ 42 (261)
T ss_pred CCCCEEEEEeCCCC---CC---------HHHHHHHHHHCCCcEEEEeeccc----------------c----cc------
Confidence 45688999997753 11 14557899999999988876420 0 11
Q ss_pred cccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccch---HHH-HHHHHHHHHHHHHhhCCCCccE
Q psy14047 84 AKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADD---GYA-KAGAMIYKIAKEFNENRDYFPI 159 (350)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~---~~~-~~~~~l~~~i~~~~~~g~~~PI 159 (350)
...++.+|+||+|||.+..+... .+. .....+.+.++++.++| +||
T Consensus 43 ----------------------------~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~g--kpV 92 (261)
T PRK01175 43 ----------------------------RKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLKAVLRKDIEEFIDEG--YPI 92 (261)
T ss_pred ----------------------------ccchhhCCEEEECCCCCcccccccchhhHHHHHHHHHHHHHHHHHCC--CeE
Confidence 12367899999999965432211 111 11112447788888887 999
Q ss_pred EEehHHHHHHHHH
Q psy14047 160 MGICLGFQLLLYT 172 (350)
Q Consensus 160 lGIC~G~QlLa~a 172 (350)
||||+|+|+|+.+
T Consensus 93 LGICnG~QlLa~~ 105 (261)
T PRK01175 93 IGICNGFQVLVEL 105 (261)
T ss_pred EEECHHHHHHHHC
Confidence 9999999999985
No 267
>PRK12493 magnesium chelatase subunit H; Provisional
Probab=27.39 E-value=1.4e+02 Score=34.19 Aligned_cols=58 Identities=26% Similarity=0.418 Sum_probs=38.2
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCC-C-HHHHHHhhc--------ccceEE
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGN-P-EAYYRKILG--------QVNGVL 69 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~-~-~~~~~~~l~--------~~dGli 69 (350)
+|+|||+...... ..+...++ .+.++.||+.|..|+++.... + ...++++|. .+|+||
T Consensus 253 ~p~Vgil~~r~~~-----~~~d~~~~-dalI~~LE~~G~~vipvf~~gl~~~~~v~~~~~~~~~~~~~~vDaiI 320 (1310)
T PRK12493 253 APTVGLLLQRTHL-----LTGNDAHY-VALIQELEARGARVIPAYAGGLDFRKPVEAFFYDPGNPDTPLVDLVV 320 (1310)
T ss_pred CCEEEEEEchhhh-----hcCCcHHH-HHHHHHHHHCCCeEEEEEecCcccchHHHHHHHhhcccCCCCccEEE
Confidence 7999999977642 12223333 488999999999999987642 1 233444442 378887
No 268
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=27.30 E-value=3.8e+02 Score=24.82 Aligned_cols=17 Identities=12% Similarity=0.214 Sum_probs=12.0
Q ss_pred hhHHHHhccCCEEEeCC
Q psy14047 109 LKIEKILGQVNGVLIPG 125 (350)
Q Consensus 109 ~~~~~~l~~~dgvIipG 125 (350)
.++...++.+|.+|-+=
T Consensus 246 ~el~ali~~a~l~I~~D 262 (319)
T TIGR02193 246 AEVAALLAGADAVVGVD 262 (319)
T ss_pred HHHHHHHHcCCEEEeCC
Confidence 34567778888888753
No 269
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=27.10 E-value=63 Score=31.22 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=28.6
Q ss_pred hhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehH
Q psy14047 108 LLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICL 164 (350)
Q Consensus 108 ~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~ 164 (350)
...+.+.+.++|.||.--+.. +. .+...+.--.+.+.++++. +|+++||-
T Consensus 275 ~~~le~~v~daDLVITGEGr~-D~-Qs~~GK~pigVA~~Akk~~-----vPvIaiaG 324 (378)
T COG1929 275 ATNLEDAVKDADLVITGEGRI-DS-QSLHGKTPIGVAKLAKKYG-----VPVIAIAG 324 (378)
T ss_pred HhCHHHhhccCCEEEeCCCcc-cc-cccCCccchHHHHhhhhhC-----CCEEEEec
Confidence 345678889999887633322 21 1112222113455666653 99999994
No 270
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.81 E-value=1.9e+02 Score=25.64 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=37.0
Q ss_pred EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHH----HHHHhh-cccceEEcCCC
Q psy14047 8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEA----YYRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~----~~~~~l-~~~dGli~~GG 73 (350)
+|||...... ...+.-+.....+++++.|..++..+...+.+ .++.+. .++|||++.+.
T Consensus 1 ~Igvi~~~~~-------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06292 1 LVGLLVPELS-------NPIFPAFAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISS 64 (273)
T ss_pred CEEEEeCCCc-------CchHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4777764321 12255566778888889999988776654432 223333 47899998764
No 271
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=26.68 E-value=22 Score=29.73 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=23.2
Q ss_pred CCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 118 VNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 118 ~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
+|.|++.||=+. ..+.-....+.+.+.+.. .+.|+|||+ |-|...
T Consensus 81 ~D~vVlmGGLAM----P~~~v~~e~v~~li~ki~----~~~iiGiCF--ms~F~k 125 (147)
T PF09897_consen 81 PDVVVLMGGLAM----PKSGVTPEDVNELIKKIS----PKKIIGICF--MSMFEK 125 (147)
T ss_dssp EEEEEEEGGGGS----TTTS--HHHHHHHHHHHE----EEEEEEEEE--TTHHHH
T ss_pred CCEEEEEccccc----CCCCCCHHHHHHHHHHhC----cCCEEEEeh--HHHHHH
Confidence 788888776442 222111112445555554 145999995 444443
No 272
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=26.60 E-value=46 Score=28.86 Aligned_cols=15 Identities=40% Similarity=1.019 Sum_probs=12.4
Q ss_pred HHHhccCCEEEeCCC
Q psy14047 112 EKILGQVNGVLIPGG 126 (350)
Q Consensus 112 ~~~l~~~dgvIipG~ 126 (350)
+++++++|+||+||+
T Consensus 31 ~~~l~~~d~liipGG 45 (184)
T TIGR03800 31 PEQLDEIDGLIIPGG 45 (184)
T ss_pred hHHhccCCEEEECCC
Confidence 345788999999996
No 273
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=26.45 E-value=91 Score=27.93 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=24.2
Q ss_pred ccCCEEEe-CCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehH
Q psy14047 116 GQVNGVLI-PGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICL 164 (350)
Q Consensus 116 ~~~dgvIi-pG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~ 164 (350)
.+.|.|.+ -|||++.--+-.... ...++... ++|++|||-
T Consensus 57 ~dld~iav~~GPGSFTGlRIG~~~----AkgLA~~l-----~iplvgvss 97 (220)
T COG1214 57 QDLDAIAVAKGPGSFTGLRIGVAF----AKGLALAL-----NIPLVGVSS 97 (220)
T ss_pred HHCCEEEEccCCCcccchhhHHHH----HHHHHHHc-----CCCEEEeCH
Confidence 46789999 888886532222221 12233332 399999984
No 274
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=26.45 E-value=4.8e+02 Score=23.53 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=19.6
Q ss_pred hHHHHHHHHHcCCeEEEEecCCC
Q psy14047 32 PASYVKAVEASGARVAPIFIGNP 54 (350)
Q Consensus 32 ~~~yv~~l~~~G~~~v~i~~~~~ 54 (350)
+..|++.+.++|+..+.+++..+
T Consensus 80 P~~~i~~~~~aGad~It~H~Ea~ 102 (228)
T PRK08091 80 QFEVAKACVAAGADIVTLQVEQT 102 (228)
T ss_pred HHHHHHHHHHhCCCEEEEcccCc
Confidence 67788999999999999998754
No 275
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.26 E-value=1.9e+02 Score=25.58 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=30.6
Q ss_pred ccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCC
Q psy14047 28 KSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG 73 (350)
+.-+.....+.+++.|..++......+.+. ++.+. .++|||++.+-
T Consensus 14 ~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (263)
T cd06280 14 FTAVSRAVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPT 64 (263)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 444566777888899999887765544332 12233 36999999864
No 276
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.08 E-value=1.5e+02 Score=27.89 Aligned_cols=36 Identities=17% Similarity=0.016 Sum_probs=22.6
Q ss_pred EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEec
Q psy14047 8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFI 51 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~ 51 (350)
.|++..++.. +...-+....+++|++.|..+.....
T Consensus 5 kv~lI~n~~~--------~~~~~~~~~i~~~L~~~g~~v~v~~~ 40 (305)
T PRK02645 5 QVIIAYKAGS--------SQAKEAAERCAKQLEARGCKVLMGPS 40 (305)
T ss_pred EEEEEEeCCC--------HHHHHHHHHHHHHHHHCCCEEEEecC
Confidence 4667666531 11233456778889999998776553
No 277
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=25.64 E-value=3.5e+02 Score=24.66 Aligned_cols=45 Identities=9% Similarity=0.048 Sum_probs=28.3
Q ss_pred ccchhHHHHHHHHHcCCeEEEE-ecCCCHHH----HHHhh-cccceEEcCC
Q psy14047 28 KSYIPASYVKAVEASGARVAPI-FIGNPEAY----YRKIL-GQVNGVLIPG 72 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i-~~~~~~~~----~~~~l-~~~dGli~~G 72 (350)
+..+....-+.+++.|..+..+ +...+.+. ++.++ .++|||++.+
T Consensus 14 ~~~i~~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~ 64 (298)
T cd06302 14 FNRMEEGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVP 64 (298)
T ss_pred HHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 5566677778888899888765 44333322 22222 3678888864
No 278
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=25.32 E-value=2.2e+02 Score=25.09 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=17.3
Q ss_pred hHHHHHHHHHcCCeEEEEecCCC
Q psy14047 32 PASYVKAVEASGARVAPIFIGNP 54 (350)
Q Consensus 32 ~~~yv~~l~~~G~~~v~i~~~~~ 54 (350)
+..|++.+..+|+..+.+++...
T Consensus 69 P~~~i~~~~~~g~~~i~~H~E~~ 91 (201)
T PF00834_consen 69 PERYIEEFAEAGADYITFHAEAT 91 (201)
T ss_dssp GGGHHHHHHHHT-SEEEEEGGGT
T ss_pred HHHHHHHHHhcCCCEEEEcccch
Confidence 35688889999999888888644
No 279
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.15 E-value=2.2e+02 Score=25.13 Aligned_cols=60 Identities=18% Similarity=0.271 Sum_probs=36.7
Q ss_pred EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCC
Q psy14047 8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG 73 (350)
+||+...... ...++.-+....-+++++.|..+.......+.+. ++.+. ..+|||++.+.
T Consensus 1 ~ig~v~~~~~------~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 65 (269)
T cd06288 1 TIGLISDEIA------TTPFAVEIILGAQDAAREHGYLLLVVNTGGDDELEAEAVEALLDHRVDGIIYATM 65 (269)
T ss_pred CeEEEeCCCC------CCccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 4777764320 0223445566777888889998877766544322 23333 36899999864
No 280
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=24.94 E-value=2.9e+02 Score=24.95 Aligned_cols=23 Identities=17% Similarity=0.392 Sum_probs=18.7
Q ss_pred hHHHHHHHHHcCCeEEEEecCCC
Q psy14047 32 PASYVKAVEASGARVAPIFIGNP 54 (350)
Q Consensus 32 ~~~yv~~l~~~G~~~v~i~~~~~ 54 (350)
+..|++.+.++|+..+.+.+...
T Consensus 71 P~~~i~~~~~aGad~it~H~Ea~ 93 (229)
T PRK09722 71 PQDYIDQLADAGADFITLHPETI 93 (229)
T ss_pred HHHHHHHHHHcCCCEEEECccCC
Confidence 56788888889999888888753
No 281
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=24.29 E-value=2.5e+02 Score=27.06 Aligned_cols=31 Identities=13% Similarity=0.204 Sum_probs=22.2
Q ss_pred chhHHHHHHHHHcCCeEEEEecCCCHHHHHH
Q psy14047 30 YIPASYVKAVEASGARVAPIFIGNPEAYYRK 60 (350)
Q Consensus 30 ~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~ 60 (350)
-++.+.++.|+++|..-+-++.++-++...+
T Consensus 201 ~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak 231 (414)
T COG2100 201 LLSKKLVDELEEAGLDRINLSVDALDPKLAK 231 (414)
T ss_pred eccHHHHHHHHHhCCceEEeecccCCHHHHH
Confidence 3557788888888888888888765544433
No 282
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=24.24 E-value=4e+02 Score=22.69 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=19.8
Q ss_pred ccCCEEEe-CCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEeh
Q psy14047 116 GQVNGVLI-PGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGIC 163 (350)
Q Consensus 116 ~~~dgvIi-pG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC 163 (350)
..+|.+++ +|- .++.. |++.+++ .| +-|.|+.
T Consensus 104 ~~iD~~vLvSgD-------~DF~~----Lv~~lre---~G--~~V~v~g 136 (160)
T TIGR00288 104 PNIDAVALVTRD-------ADFLP----VINKAKE---NG--KETIVIG 136 (160)
T ss_pred CCCCEEEEEecc-------HhHHH----HHHHHHH---CC--CEEEEEe
Confidence 67899988 552 23433 5555565 35 7777764
No 283
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=24.21 E-value=59 Score=29.76 Aligned_cols=18 Identities=28% Similarity=0.837 Sum_probs=14.6
Q ss_pred HHHHhccCCEEEeCCCCC
Q psy14047 111 IEKILGQVNGVLIPGGGA 128 (350)
Q Consensus 111 ~~~~l~~~dgvIipG~g~ 128 (350)
+.+.++.+||||++||+.
T Consensus 55 ~~~~l~~~DGlil~GG~~ 72 (254)
T PRK11366 55 LEQLLPKLDGIYLPGSPS 72 (254)
T ss_pred HHHHHHhCCEEEeCCCCC
Confidence 456678899999999864
No 284
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=24.07 E-value=4.3e+02 Score=23.32 Aligned_cols=46 Identities=9% Similarity=0.088 Sum_probs=28.8
Q ss_pred ccchhHHHHHHHHH-cCCeEEEEecCCCHH----HHHHhhc-ccceEEcCCC
Q psy14047 28 KSYIPASYVKAVEA-SGARVAPIFIGNPEA----YYRKILG-QVNGVLIPGG 73 (350)
Q Consensus 28 ~~~i~~~yv~~l~~-~G~~~v~i~~~~~~~----~~~~~l~-~~dGli~~GG 73 (350)
+.-+.....+++++ .|..++......+.+ .++.+++ ++||+++.+.
T Consensus 14 ~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 65 (272)
T cd06301 14 LTLLRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPV 65 (272)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 66667777888888 788777654433332 2333333 6888887653
No 285
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=23.81 E-value=2.4e+02 Score=24.89 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=31.3
Q ss_pred ccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCC
Q psy14047 28 KSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG 73 (350)
+.-+.....+++++.|..++......+.+. +..++ .++|||++.+.
T Consensus 14 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (268)
T cd06298 14 FAELARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGG 64 (268)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 555667777888899999887766544332 23333 47999999764
No 286
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=23.50 E-value=4.4e+02 Score=23.05 Aligned_cols=28 Identities=14% Similarity=-0.023 Sum_probs=20.7
Q ss_pred ccchhHHHHHHHHHcCCeEEEE-ecCCCH
Q psy14047 28 KSYIPASYVKAVEASGARVAPI-FIGNPE 55 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i-~~~~~~ 55 (350)
+..+....-++.++.|..+..+ +...+.
T Consensus 13 ~~~~~~g~~~~a~~~g~~~~~~~~~~~d~ 41 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYEVEIVFDAQNDP 41 (257)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEESTTTH
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCCCCCCH
Confidence 6667778888888899998886 544443
No 287
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=23.46 E-value=1.9e+02 Score=25.47 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=35.8
Q ss_pred EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhh-cccceEEcCCC
Q psy14047 8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l-~~~dGli~~GG 73 (350)
+|||...... ..+..-+.....+++++.|..++........+.++.+. .++|||++.+.
T Consensus 1 ~igvv~~~~~-------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 60 (261)
T cd06272 1 TIGLIWPSVS-------RVALTELVTGINQAISKNGYNMNVSITPSLAEAEDLFKENRFDGVIIFGE 60 (261)
T ss_pred CEEEEecCCC-------chhHHHHHHHHHHHHHHcCCEEEEEecccHHHHHHHHHHcCcCEEEEeCC
Confidence 3677764321 12244455677788888998877766542223333333 37999998754
No 288
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=23.38 E-value=55 Score=30.04 Aligned_cols=15 Identities=47% Similarity=0.917 Sum_probs=12.5
Q ss_pred HHHhccCCEEEeCCC
Q psy14047 112 EKILGQVNGVLIPGG 126 (350)
Q Consensus 112 ~~~l~~~dgvIipG~ 126 (350)
+++|.++|+||+||+
T Consensus 33 ~~~L~~~DgLILPGG 47 (248)
T PLN02832 33 PEQLEGVSGLIIPGG 47 (248)
T ss_pred HHHhccCCEEEeCCC
Confidence 356789999999993
No 289
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.28 E-value=84 Score=29.07 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=24.1
Q ss_pred cCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHH
Q psy14047 117 QVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGF 166 (350)
Q Consensus 117 ~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~ 166 (350)
++|.+|.-||.. .++..++.+...-..+||+||=.|.
T Consensus 35 ~~Dlvi~iGGDG-------------T~L~a~~~~~~~~~~iPilGIN~G~ 71 (265)
T PRK04885 35 NPDIVISVGGDG-------------TLLSAFHRYENQLDKVRFVGVHTGH 71 (265)
T ss_pred CCCEEEEECCcH-------------HHHHHHHHhcccCCCCeEEEEeCCC
Confidence 468888888643 2556666654310139999998874
No 290
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=22.71 E-value=4e+02 Score=24.69 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=28.6
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCC
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNP 54 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~ 54 (350)
..+||||..|.. .+|-+-.++++.+.+.|-+|.+|-.+.+
T Consensus 29 a~~iGiTG~PGa---------GKSTli~~l~~~~~~~g~~VaVlAVDPS 68 (266)
T PF03308_consen 29 AHVIGITGPPGA---------GKSTLIDALIRELRERGKRVAVLAVDPS 68 (266)
T ss_dssp SEEEEEEE-TTS---------SHHHHHHHHHHHHHHTT--EEEEEE-GG
T ss_pred ceEEEeeCCCCC---------cHHHHHHHHHHHHhhcCCceEEEEECCC
Confidence 369999998864 2566777888889999999999988754
No 291
>PRK04155 chaperone protein HchA; Provisional
Probab=22.68 E-value=1.1e+02 Score=28.65 Aligned_cols=17 Identities=6% Similarity=0.090 Sum_probs=14.4
Q ss_pred HHHHHHcCCeEEEEecC
Q psy14047 36 VKAVEASGARVAPIFIG 52 (350)
Q Consensus 36 v~~l~~~G~~~v~i~~~ 52 (350)
++.|+++|..+.++...
T Consensus 83 ~~~L~~AG~eVdiAS~~ 99 (287)
T PRK04155 83 MYHLHKAGFEFDVATLS 99 (287)
T ss_pred HHHHHHCCCEEEEEecC
Confidence 67899999999888874
No 292
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=22.55 E-value=3.3e+02 Score=28.80 Aligned_cols=77 Identities=18% Similarity=0.165 Sum_probs=38.0
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHc-CCeEEEEecCC-CHHHHHHhh------cccceEEcCCCC
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEAS-GARVAPIFIGN-PEAYYRKIL------GQVNGVLIPGGG 74 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~-G~~~v~i~~~~-~~~~~~~~l------~~~dGli~~GG~ 74 (350)
+.+|.++|.+.-... ......+. ...+..-+-..++.. |+.++.+.... +.+.+.+.+ ...|-||.+||.
T Consensus 456 ~~~~rvaIIt~sde~-~~~~~~D~sg~~~~~il~~n~~~l~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVItTGGt 534 (659)
T PLN02699 456 NPEVKVAILTVSDTV-SSGAGPDRSGPRAVSVVNSSSEKLGGAKVVATAVVPDDVEKIKDVLQKWSDIDRMDLILTLGGT 534 (659)
T ss_pred cCCcEEEEEEECCcc-cCCCcccccchHHHHHHHhhhhhcCCcEEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 567899998754331 01100110 011111111223334 88877655433 334444433 357889999886
Q ss_pred cccccCCc
Q psy14047 75 ASFYADDG 82 (350)
Q Consensus 75 ~dv~~~~~ 82 (350)
.+.++|+
T Consensus 535 -s~g~~D~ 541 (659)
T PLN02699 535 -GFTPRDV 541 (659)
T ss_pred -cCCCCcc
Confidence 6765543
No 293
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=22.45 E-value=2.5e+02 Score=24.62 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=31.0
Q ss_pred ccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCC
Q psy14047 28 KSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG 73 (350)
+.-+.....+++++.|..++.+....+.+. ++.+. .++|||++.+.
T Consensus 14 ~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06284 14 FSEILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDG 64 (267)
T ss_pred HHHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 555667788889999999877766554332 22222 36999999654
No 294
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=22.43 E-value=6.5e+02 Score=26.00 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=29.2
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHcCCeEEEEec
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEASGARVAPIFI 51 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~G~~~v~i~~ 51 (350)
.+||+|||...+... .. ... -.-+....-+.++++|+.|+..+.
T Consensus 29 l~kP~IgI~ns~se~--~P--ch~hl~~la~~Vk~gi~~aGg~p~ef~t 73 (552)
T PRK00911 29 FDKPFIGIANSWNEI--TP--CNIHLNELADAVKEGVRAAGGVPFEFNT 73 (552)
T ss_pred hcCCEEEEecccccc--cc--chhhHHHHHHHHHHHHHHcCCEeEEeCC
Confidence 469999999987653 11 111 233445555778889999888764
No 295
>PRK00549 competence damage-inducible protein A; Provisional
Probab=22.33 E-value=3.6e+02 Score=26.68 Aligned_cols=48 Identities=13% Similarity=0.021 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCeEEEEecCCC-HHHHH----HhhcccceEEcCCCCcccccCC
Q psy14047 33 ASYVKAVEASGARVAPIFIGNP-EAYYR----KILGQVNGVLIPGGGASFYADD 81 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~-~~~~~----~~l~~~dGli~~GG~~dv~~~~ 81 (350)
....+.|.+.|..+..+....| .+.+. ..++..|-||++||- ...++|
T Consensus 23 ~~L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVItTGGl-Gpt~dD 75 (414)
T PRK00549 23 QFLSEKLAELGIDVYHQTVVGDNPERLLSALEIAEERSDLIITTGGL-GPTKDD 75 (414)
T ss_pred HHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccCCCEEEECCCC-CCCCCc
Confidence 3445778999998876554433 34343 344678999999886 444443
No 296
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=22.18 E-value=4.7e+02 Score=23.94 Aligned_cols=46 Identities=22% Similarity=0.141 Sum_probs=29.8
Q ss_pred ccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCC
Q psy14047 28 KSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG 73 (350)
+.-+....-++.++.|..++..+...+.+. ++.++ .++|||++.+.
T Consensus 13 ~~~~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~ 63 (302)
T TIGR02634 13 WQKDRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQ 63 (302)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 444556777888889998887766544332 22222 46899998753
No 297
>PRK05826 pyruvate kinase; Provisional
Probab=22.10 E-value=4.7e+02 Score=26.35 Aligned_cols=32 Identities=6% Similarity=-0.028 Sum_probs=25.2
Q ss_pred chhHHHHHHHHHcCCeEEEEecCCCHHHHHHh
Q psy14047 30 YIPASYVKAVEASGARVAPIFIGNPEAYYRKI 61 (350)
Q Consensus 30 ~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~ 61 (350)
.-+...+++..+.|+.-+.+|...+.++++++
T Consensus 173 e~D~~~i~~ald~g~d~I~~sfV~saedv~~l 204 (465)
T PRK05826 173 EKDKADIKFAAEQGVDYIAVSFVRSAEDVEEA 204 (465)
T ss_pred hhhHHHHHHHHHCCCCEEEECCCCCHHHHHHH
Confidence 34456678888999999999999988776653
No 298
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.92 E-value=2.9e+02 Score=24.46 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=30.6
Q ss_pred ccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCC
Q psy14047 28 KSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG 73 (350)
+..+.....+++++.|..+.......+.+. ++.+. .++|||++.+-
T Consensus 14 ~~~~~~gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (269)
T cd06293 14 FAELADAVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTN 64 (269)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 555667778899999998877655433322 22222 46999999863
No 299
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=21.86 E-value=7.1e+02 Score=24.23 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCCeEEEEec----------CCCHHHHHHhhcccceEEcCC
Q psy14047 33 ASYVKAVEASGARVAPIFI----------GNPEAYYRKILGQVNGVLIPG 72 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~----------~~~~~~~~~~l~~~dGli~~G 72 (350)
..+++.+.++|+..+.|.. ..+...+.++...++.-++.|
T Consensus 145 ~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~G 194 (369)
T TIGR01304 145 REIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIAG 194 (369)
T ss_pred HHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEEe
Confidence 4666777777777776641 123444545555554445543
No 300
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=21.52 E-value=5.5e+02 Score=22.40 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=30.8
Q ss_pred ccchhHHHHHHHHHcCCeEEEEecCCCH---HHHHHhh--cccceEEcCCCC
Q psy14047 28 KSYIPASYVKAVEASGARVAPIFIGNPE---AYYRKIL--GQVNGVLIPGGG 74 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~~---~~~~~~l--~~~dGli~~GG~ 74 (350)
+.-+....-+.+++.|..+......... +.+.+++ .++||+++.+..
T Consensus 18 ~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~ 69 (268)
T cd06271 18 FAEFLSGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRTR 69 (268)
T ss_pred HHHHHHHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 4555567777888889887777655432 2344444 369999997653
No 301
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=21.42 E-value=3e+02 Score=24.15 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=30.7
Q ss_pred ccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCC
Q psy14047 28 KSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG 73 (350)
+.-+.....+++++.|..++......+.+. ++.++ .++|||++.+.
T Consensus 14 ~~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 64 (267)
T cd06283 14 SSLVLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPT 64 (267)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCC
Confidence 455567777888889988877666544332 23333 36999999764
No 302
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=21.09 E-value=5.5e+02 Score=27.21 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=21.7
Q ss_pred cCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehH
Q psy14047 117 QVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICL 164 (350)
Q Consensus 117 ~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~ 164 (350)
+..+||++|+..+.. .+.+++..+.++| .|||-+=.
T Consensus 271 ~~a~lIlTgg~~~~~----------~v~~l~~~a~~~~--ipVl~t~~ 306 (684)
T PRK05632 271 PIAGLLLTGGYEPDP----------RIAKLCEGAFETG--LPVLSVDT 306 (684)
T ss_pred CceEEEEcCCCCCCH----------HHHHHHhhcccCC--CCEEEecC
Confidence 478889988766432 1334443333345 99998755
No 303
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.95 E-value=4.6e+02 Score=23.16 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=27.8
Q ss_pred ccchhHHHHHHHHH--cCCeEEEEecCCCHHH----HHHhh-cccceEEcCCC
Q psy14047 28 KSYIPASYVKAVEA--SGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 28 ~~~i~~~yv~~l~~--~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG 73 (350)
+.-+.....+++++ .|..++......+.+. ++.++ .++|||++.+.
T Consensus 14 ~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~ 66 (271)
T cd06321 14 FVALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAV 66 (271)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 55566777788888 6666655544444322 22222 47899998653
No 304
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=20.76 E-value=5.4e+02 Score=22.70 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=28.0
Q ss_pred ccchhHHHHHHHHHcCCeEEEEecC--CCHH----HHHHhh-cccceEEcCCC
Q psy14047 28 KSYIPASYVKAVEASGARVAPIFIG--NPEA----YYRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i~~~--~~~~----~~~~~l-~~~dGli~~GG 73 (350)
+.-+....-+++++.|..+...... .+.. .++.++ .++||+++.+.
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (275)
T cd06320 14 WRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPI 66 (275)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 4455567778888899887766432 2221 233333 46899887653
No 305
>PLN02327 CTP synthase
Probab=20.65 E-value=2e+02 Score=29.67 Aligned_cols=17 Identities=41% Similarity=0.855 Sum_probs=14.3
Q ss_pred HhhcccceEEcCCCCcc
Q psy14047 60 KILGQVNGVLIPGGGAS 76 (350)
Q Consensus 60 ~~l~~~dGli~~GG~~d 76 (350)
+.|..+|||++|||..+
T Consensus 358 ~~L~~~DGIvvpGGfG~ 374 (557)
T PLN02327 358 KLLKGADGILVPGGFGD 374 (557)
T ss_pred HhhccCCEEEeCCCCCC
Confidence 46899999999999744
No 306
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=20.48 E-value=3.5e+02 Score=24.82 Aligned_cols=61 Identities=8% Similarity=0.083 Sum_probs=36.4
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCC
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG 73 (350)
..+||+...... .....-+.....+.+++.|..++......+.+. ++.+. .++||+|+.+.
T Consensus 59 ~~~Ig~i~~~~~-------~~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdGvIi~~~ 124 (311)
T TIGR02405 59 DKVVAVIVSRLD-------SPSENLAVSGMLPVFYTAGYDPIIMESQFSPQLTNEHLSVLQKRNVDGVILFGF 124 (311)
T ss_pred CCEEEEEeCCcc-------cccHHHHHHHHHHHHHHCCCeEEEecCCCChHHHHHHHHHHHhcCCCEEEEeCC
Confidence 368999873211 111333456667788889999877665444332 22222 36899998764
No 307
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=20.43 E-value=2.7e+02 Score=24.50 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=36.7
Q ss_pred EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCCC
Q psy14047 8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG~ 74 (350)
+|||...... ..++.-+.....+++++.|..++..+...+.+. ++.+. .++|||++.+..
T Consensus 1 ~I~vi~~~~~-------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~ 65 (265)
T cd06291 1 LIGLIVPTIS-------NPFFSELARAVEKELYKKGYKLILCNSDNDPEKEREYLEMLRQNQVDGIIAGTHN 65 (265)
T ss_pred CEEEEECCCC-------ChhHHHHHHHHHHHHHHCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 4677764321 123555666777888889999887765544322 22223 369999998753
No 308
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.09 E-value=2.7e+02 Score=25.04 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=30.4
Q ss_pred ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHh-hcccceEEcCCC
Q psy14047 28 KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKI-LGQVNGVLIPGG 73 (350)
Q Consensus 28 ~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~-l~~~dGli~~GG 73 (350)
...+-....+.+++.|..+...+.....+.+..+ -.++||+++.+-
T Consensus 19 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 65 (283)
T cd06279 19 ASQFLAGVAEVLDAAGVNLLLLPASSEDSDSALVVSALVDGFIVYGV 65 (283)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecCccHHHHHHHHHhcCCCEEEEeCC
Confidence 4445566678888899998877665423333332 257999999764
No 309
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=20.08 E-value=2.9e+02 Score=24.34 Aligned_cols=60 Identities=22% Similarity=0.332 Sum_probs=37.7
Q ss_pred EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHH----HHHHhh--cccceEEcCCCC
Q psy14047 8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEA----YYRKIL--GQVNGVLIPGGG 74 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~----~~~~~l--~~~dGli~~GG~ 74 (350)
+|||...... ..++.-+....-+++++.|..+.....+...+ .+.+.+ .++|||++....
T Consensus 1 ~I~vi~~~~~-------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 66 (270)
T cd01545 1 LIGLLYDNPS-------PGYVSEIQLGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPPL 66 (270)
T ss_pred CEEEEEcCCC-------cccHHHHHHHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4777774321 12355566777788889999988877664332 233323 468999987653
Done!