Query psy14047
Match_columns 350
No_of_seqs 204 out of 1925
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 18:14:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9x_A Gamma-glutamyl hydrolas 100.0 7.1E-52 2.4E-56 390.9 24.5 287 3-350 27-315 (315)
2 3fij_A LIN1909 protein; 11172J 100.0 2.9E-36 1E-40 276.3 21.8 228 4-313 2-244 (254)
3 1i1q_B Anthranilate synthase c 100.0 9.5E-27 3.2E-31 204.3 22.2 177 32-311 13-191 (192)
4 1wl8_A GMP synthase [glutamine 100.0 5.6E-27 1.9E-31 205.2 19.2 176 32-311 13-188 (189)
5 1qdl_B Protein (anthranilate s 99.9 1E-26 3.4E-31 204.7 20.4 176 33-307 15-193 (195)
6 2a9v_A GMP synthase; structura 99.9 2.6E-27 8.9E-32 211.1 14.2 175 32-311 26-201 (212)
7 2vpi_A GMP synthase; guanine m 99.9 9.4E-27 3.2E-31 208.3 13.8 190 6-313 24-214 (218)
8 1a9x_B Carbamoyl phosphate syn 99.9 9E-26 3.1E-30 216.1 19.3 174 33-311 202-375 (379)
9 1gpm_A GMP synthetase, XMP ami 99.9 2.4E-25 8.1E-30 223.4 18.1 197 4-309 5-201 (525)
10 3tqi_A GMP synthase [glutamine 99.9 3.1E-25 1.1E-29 222.5 15.9 206 4-318 8-213 (527)
11 1o1y_A Conserved hypothetical 99.9 3E-25 1E-29 201.3 13.9 163 33-278 27-189 (239)
12 2ywb_A GMP synthase [glutamine 99.9 2.2E-25 7.6E-30 222.6 13.7 176 33-313 13-188 (503)
13 3uow_A GMP synthetase; structu 99.9 5.8E-25 2E-29 221.5 15.8 207 2-318 3-238 (556)
14 2ywj_A Glutamine amidotransfer 99.9 1E-24 3.5E-29 190.2 14.3 171 33-311 13-185 (186)
15 4gud_A Imidazole glycerol phos 99.9 2.3E-25 7.8E-30 198.1 10.0 123 150-312 68-207 (211)
16 2w7t_A CTP synthetase, putativ 99.9 1E-24 3.5E-29 201.4 14.3 145 145-318 87-263 (273)
17 3m3p_A Glutamine amido transfe 99.9 2.6E-24 8.8E-29 196.0 13.5 164 33-279 18-181 (250)
18 3l7n_A Putative uncharacterize 99.9 4.6E-24 1.6E-28 193.1 12.3 168 33-278 15-183 (236)
19 2ywd_A Glutamine amidotransfer 99.9 7E-24 2.4E-28 185.5 12.7 182 6-310 2-190 (191)
20 1gpw_B Amidotransferase HISH; 99.9 7.2E-24 2.5E-28 187.1 9.7 133 143-312 66-200 (201)
21 2v4u_A CTP synthase 2; pyrimid 99.9 1.2E-23 4.1E-28 195.8 11.2 144 143-317 108-282 (289)
22 3d54_D Phosphoribosylformylgly 99.9 7.4E-23 2.5E-27 181.9 15.7 205 6-310 2-212 (213)
23 2vxo_A GMP synthase [glutamine 99.9 1.7E-23 5.7E-28 215.1 11.9 174 34-312 44-218 (697)
24 3r75_A Anthranilate/para-amino 99.9 6E-23 2.1E-27 209.3 15.2 181 31-314 458-638 (645)
25 2abw_A PDX2 protein, glutamina 99.9 5.6E-23 1.9E-27 184.8 11.7 197 5-312 2-216 (227)
26 1q7r_A Predicted amidotransfer 99.9 5.5E-23 1.9E-27 184.0 11.0 189 4-311 21-211 (219)
27 1vco_A CTP synthetase; tetrame 99.9 1.1E-21 3.7E-26 195.4 14.8 150 145-313 375-547 (550)
28 2nv0_A Glutamine amidotransfer 99.9 1.5E-21 5.3E-26 171.4 13.7 174 33-311 14-189 (196)
29 1s1m_A CTP synthase; CTP synth 99.8 1.6E-21 5.5E-26 194.0 10.3 147 145-312 363-539 (545)
30 2iss_D Glutamine amidotransfer 99.8 3.6E-21 1.2E-25 170.8 11.3 182 4-309 18-207 (208)
31 3nva_A CTP synthase; rossman f 99.8 4.9E-21 1.7E-25 187.7 9.9 169 113-311 346-534 (535)
32 1jvn_A Glutamine, bifunctional 99.8 3.1E-21 1.1E-25 194.5 8.7 194 5-309 3-215 (555)
33 1ka9_H Imidazole glycerol phos 99.8 4.1E-21 1.4E-25 169.3 8.0 168 33-309 16-200 (200)
34 2vdj_A Homoserine O-succinyltr 99.7 4.4E-17 1.5E-21 151.4 16.4 116 142-280 126-241 (301)
35 2h2w_A Homoserine O-succinyltr 99.7 1.5E-16 5E-21 148.2 11.6 141 115-280 109-252 (312)
36 3ugj_A Phosphoribosylformylgly 99.2 1.5E-10 5.2E-15 125.4 15.0 57 5-74 1046-1102(1303)
37 3l4e_A Uncharacterized peptida 98.6 1E-07 3.4E-12 83.8 9.2 36 133-172 94-129 (206)
38 1fy2_A Aspartyl dipeptidase; s 98.4 1.2E-07 4.1E-12 84.8 4.6 56 113-173 75-130 (229)
39 1oi4_A Hypothetical protein YH 97.4 0.00012 4.3E-09 63.1 4.4 50 116-172 85-134 (193)
40 2rk3_A Protein DJ-1; parkinson 97.2 0.00086 2.9E-08 57.8 7.6 51 116-172 65-115 (197)
41 3efe_A THIJ/PFPI family protei 96.9 0.0055 1.9E-07 53.5 10.6 49 116-172 73-121 (212)
42 3cne_A Putative protease I; st 96.9 0.0011 3.8E-08 55.9 5.6 54 115-172 64-120 (175)
43 4hcj_A THIJ/PFPI domain protei 96.9 0.0011 3.8E-08 56.4 5.3 51 115-172 67-117 (177)
44 3l18_A Intracellular protease 96.8 0.0008 2.7E-08 56.3 3.6 50 116-172 62-111 (168)
45 2vrn_A Protease I, DR1199; cys 96.7 0.00064 2.2E-08 58.2 2.4 51 116-172 74-124 (190)
46 3ot1_A 4-methyl-5(B-hydroxyeth 96.7 0.0017 5.7E-08 56.6 4.9 51 116-172 70-121 (208)
47 1vhq_A Enhancing lycopene bios 96.6 0.00094 3.2E-08 59.2 2.9 58 115-174 88-151 (232)
48 3ej6_A Catalase-3; heme, hydro 96.5 0.012 4.3E-07 59.6 10.9 54 116-172 589-646 (688)
49 3f5d_A Protein YDEA; unknow pr 96.5 0.0038 1.3E-07 54.4 6.2 48 116-172 62-109 (206)
50 2ab0_A YAJL; DJ-1/THIJ superfa 96.3 0.0012 3.9E-08 57.5 1.7 52 115-172 64-116 (205)
51 2fex_A Conserved hypothetical 96.3 0.0015 5.2E-08 55.8 2.4 49 116-172 62-110 (188)
52 3en0_A Cyanophycinase; serine 96.3 0.0054 1.9E-07 56.3 6.2 59 109-171 102-160 (291)
53 3er6_A Putative transcriptiona 96.3 0.0034 1.2E-07 54.7 4.6 53 115-172 72-124 (209)
54 4e08_A DJ-1 beta; flavodoxin-l 96.2 0.0019 6.6E-08 55.2 2.6 51 116-172 66-116 (190)
55 3ttv_A Catalase HPII; heme ori 96.2 0.0081 2.8E-07 61.4 7.5 49 116-172 660-708 (753)
56 3l3b_A ES1 family protein; ssg 96.2 0.003 1E-07 56.5 3.7 56 115-173 105-168 (242)
57 3gra_A Transcriptional regulat 96.1 0.0049 1.7E-07 53.4 4.8 49 115-172 69-117 (202)
58 1u9c_A APC35852; structural ge 96.0 0.0018 6.2E-08 56.8 1.4 52 115-172 87-138 (224)
59 1rw7_A YDR533CP; alpha-beta sa 95.6 0.0026 8.8E-08 56.8 0.8 52 115-172 96-147 (243)
60 3n7t_A Macrophage binding prot 95.5 0.0045 1.5E-07 55.5 1.8 52 115-172 103-154 (247)
61 1sy7_A Catalase 1; heme oxidat 95.4 0.032 1.1E-06 57.3 8.2 53 116-174 594-646 (715)
62 3kkl_A Probable chaperone prot 95.3 0.0069 2.4E-07 54.1 2.5 52 115-172 96-147 (244)
63 3noq_A THIJ/PFPI family protei 95.3 0.014 4.7E-07 51.7 4.4 51 115-172 63-113 (231)
64 2iuf_A Catalase; oxidoreductas 95.0 0.046 1.6E-06 55.6 7.6 28 143-172 621-648 (688)
65 3uk7_A Class I glutamine amido 94.8 0.018 6.2E-07 55.0 4.0 51 115-172 280-330 (396)
66 1n57_A Chaperone HSP31, protei 94.8 0.0088 3E-07 54.9 1.6 52 115-172 143-194 (291)
67 3mgk_A Intracellular protease/ 94.7 0.0092 3.2E-07 52.0 1.6 50 116-172 64-113 (211)
68 3ewn_A THIJ/PFPI family protei 94.4 0.02 6.9E-07 51.4 3.0 49 117-172 84-133 (253)
69 3uk7_A Class I glutamine amido 94.3 0.026 8.9E-07 53.9 3.6 51 115-172 87-137 (396)
70 3fse_A Two-domain protein cont 94.1 0.029 1E-06 53.1 3.4 50 116-172 72-121 (365)
71 4gdh_A DJ-1, uncharacterized p 93.0 0.035 1.2E-06 47.6 1.9 50 114-168 70-119 (194)
72 3bhn_A THIJ/PFPI domain protei 90.6 0.1 3.6E-06 46.1 2.2 50 115-172 78-128 (236)
73 3pzy_A MOG; ssgcid, seattle st 88.6 0.39 1.3E-05 39.9 4.2 74 3-82 4-83 (164)
74 3rfq_A Pterin-4-alpha-carbinol 79.4 1.8 6.3E-05 36.6 4.3 73 4-82 28-106 (185)
75 1y5e_A Molybdenum cofactor bio 79.4 6.8 0.00023 32.3 7.8 71 4-81 11-88 (169)
76 1di6_A MOGA, molybdenum cofact 79.3 2.4 8.1E-05 36.2 5.0 73 4-82 1-83 (195)
77 1mkz_A Molybdenum cofactor bio 78.9 6.9 0.00024 32.4 7.7 71 4-81 8-85 (172)
78 2pjk_A 178AA long hypothetical 78.6 4.1 0.00014 34.0 6.3 76 4-81 13-97 (178)
79 3kbq_A Protein TA0487; structu 78.2 3.4 0.00012 34.4 5.6 71 5-81 2-78 (172)
80 1g8l_A Molybdopterin biosynthe 72.1 7.8 0.00027 36.9 7.0 78 4-82 175-260 (411)
81 1jlj_A Gephyrin; globular alph 70.6 5.6 0.00019 33.5 5.1 73 4-82 12-95 (189)
82 3h75_A Periplasmic sugar-bindi 68.1 18 0.00063 32.6 8.6 63 4-72 1-70 (350)
83 1uz5_A MOEA protein, 402AA lon 67.5 9.9 0.00034 36.1 6.6 77 4-81 178-262 (402)
84 2fts_A Gephyrin; gephyrin, neu 64.3 9.4 0.00032 36.4 5.8 77 4-81 179-263 (419)
85 2pbq_A Molybdenum cofactor bio 64.2 9.4 0.00032 31.7 5.2 71 5-81 4-84 (178)
86 1wu2_A MOEA protein, molybdopt 63.7 9 0.00031 36.3 5.5 78 4-82 180-267 (396)
87 3m9w_A D-xylose-binding peripl 63.5 42 0.0015 29.4 9.9 62 6-74 2-68 (313)
88 2is8_A Molybdopterin biosynthe 63.3 4.2 0.00014 33.4 2.8 48 34-82 25-79 (164)
89 3uug_A Multiple sugar-binding 61.1 56 0.0019 28.7 10.3 63 5-74 2-69 (330)
90 2g2c_A Putative molybdenum cof 61.0 5.4 0.00019 32.8 3.1 71 5-81 4-85 (167)
91 3l6u_A ABC-type sugar transpor 60.0 41 0.0014 29.0 9.1 62 5-73 7-73 (293)
92 3ff4_A Uncharacterized protein 59.9 10 0.00035 29.5 4.4 22 32-53 20-41 (122)
93 1uuy_A CNX1, molybdopterin bio 57.8 17 0.00057 29.7 5.6 72 4-81 3-87 (167)
94 3l49_A ABC sugar (ribose) tran 52.2 71 0.0024 27.4 9.2 63 5-74 4-71 (291)
95 3ksm_A ABC-type sugar transpor 51.2 72 0.0024 27.0 9.0 60 7-73 1-68 (276)
96 1u0t_A Inorganic polyphosphate 50.6 16 0.00053 33.1 4.6 36 8-51 6-41 (307)
97 3rot_A ABC sugar transporter, 49.7 61 0.0021 28.1 8.4 62 5-73 2-70 (297)
98 2h2w_A Homoserine O-succinyltr 46.6 16 0.00054 33.4 3.9 63 5-77 45-124 (312)
99 2fn9_A Ribose ABC transporter, 46.0 1E+02 0.0035 26.4 9.3 61 6-73 2-67 (290)
100 3g1w_A Sugar ABC transporter; 45.5 1E+02 0.0035 26.6 9.2 62 6-74 4-71 (305)
101 3iwt_A 178AA long hypothetical 45.3 28 0.00095 28.5 5.0 46 35-81 45-97 (178)
102 1ehs_A STB, heat-stable entero 45.2 2.6 8.8E-05 25.8 -1.1 17 158-174 31-47 (48)
103 2dri_A D-ribose-binding protei 44.5 1E+02 0.0034 26.2 8.9 61 6-73 1-66 (271)
104 2ioj_A Hypothetical protein AF 41.3 78 0.0027 24.6 6.9 27 143-174 90-116 (139)
105 3tb6_A Arabinose metabolism tr 39.6 88 0.003 26.8 7.8 63 5-74 14-81 (298)
106 3l3b_A ES1 family protein; ssg 38.3 69 0.0024 27.8 6.7 41 7-52 24-64 (242)
107 2an1_A Putative kinase; struct 38.2 32 0.0011 30.6 4.6 36 7-50 6-41 (292)
108 2x7x_A Sensor protein; transfe 38.1 1.1E+02 0.0039 26.8 8.5 64 3-74 3-72 (325)
109 2zuv_A Lacto-N-biose phosphory 37.8 55 0.0019 33.2 6.4 59 7-72 439-508 (759)
110 3miz_A Putative transcriptiona 37.4 87 0.003 27.1 7.4 62 6-74 13-80 (301)
111 1eiw_A Hypothetical protein MT 37.1 22 0.00074 27.2 2.8 39 113-162 34-73 (111)
112 2ioy_A Periplasmic sugar-bindi 37.1 1.5E+02 0.0051 25.3 8.9 60 7-73 2-66 (283)
113 2fvy_A D-galactose-binding per 36.8 1.9E+02 0.0064 24.8 9.6 60 7-73 3-68 (309)
114 1t0b_A THUA-like protein; treh 36.8 61 0.0021 28.3 6.1 59 144-210 87-149 (252)
115 2r47_A Uncharacterized protein 36.7 4.1 0.00014 33.3 -1.5 51 116-174 83-133 (157)
116 8abp_A L-arabinose-binding pro 35.9 1.3E+02 0.0045 25.8 8.4 60 6-73 2-66 (306)
117 3egc_A Putative ribose operon 32.0 1E+02 0.0035 26.4 6.9 63 5-74 7-74 (291)
118 3h5o_A Transcriptional regulat 31.0 1.3E+02 0.0045 26.6 7.6 62 6-74 62-128 (339)
119 3jy6_A Transcriptional regulat 30.8 91 0.0031 26.6 6.3 63 5-74 6-73 (276)
120 3tov_A Glycosyl transferase fa 30.5 1.8E+02 0.0063 26.2 8.6 55 5-64 184-238 (349)
121 3k4h_A Putative transcriptiona 30.0 1.1E+02 0.0037 26.2 6.7 67 5-74 7-79 (292)
122 3kke_A LACI family transcripti 30.0 1.1E+02 0.0039 26.5 6.9 62 6-74 15-81 (303)
123 3nva_A CTP synthase; rossman f 29.0 37 0.0012 33.4 3.5 60 7-76 294-362 (535)
124 3o74_A Fructose transport syst 29.0 1.3E+02 0.0045 25.2 7.0 62 6-74 2-68 (272)
125 3fij_A LIN1909 protein; 11172J 28.4 28 0.00095 30.4 2.4 18 111-128 55-72 (254)
126 2q62_A ARSH; alpha/beta, flavo 28.1 1.2E+02 0.0039 26.4 6.4 58 7-71 36-105 (247)
127 2h3h_A Sugar ABC transporter, 28.1 2.6E+02 0.0088 24.1 9.0 60 6-73 1-66 (313)
128 3cwc_A Putative glycerate kina 28.0 36 0.0012 31.9 3.2 49 109-164 279-327 (383)
129 1byk_A Protein (trehalose oper 27.6 1.1E+02 0.0037 25.6 6.2 61 6-73 2-67 (255)
130 1l9x_A Gamma-glutamyl hydrolas 26.5 29 0.00099 31.5 2.2 20 110-129 79-98 (315)
131 3dbi_A Sugar-binding transcrip 25.9 2E+02 0.0069 25.2 7.9 64 6-74 61-129 (338)
132 1tjy_A Sugar transport protein 25.4 2.9E+02 0.0098 24.0 8.8 60 6-72 3-68 (316)
133 3hs3_A Ribose operon repressor 25.2 1.3E+02 0.0044 25.7 6.3 61 5-72 9-75 (277)
134 3cs3_A Sugar-binding transcrip 25.2 68 0.0023 27.4 4.4 61 5-74 7-67 (277)
135 3e61_A Putative transcriptiona 25.0 96 0.0033 26.3 5.4 60 6-72 8-72 (277)
136 1y81_A Conserved hypothetical 24.9 1.8E+02 0.0063 22.5 6.5 21 31-51 29-49 (138)
137 2amj_A Modulator of drug activ 24.3 1.2E+02 0.0042 25.1 5.7 62 7-71 14-77 (204)
138 3o1i_D Periplasmic protein TOR 24.2 1.6E+02 0.0053 25.3 6.7 62 6-74 5-73 (304)
139 1jr2_A Uroporphyrinogen-III sy 24.1 77 0.0026 27.8 4.6 42 33-74 38-86 (286)
140 3kjx_A Transcriptional regulat 23.3 2E+02 0.0068 25.4 7.3 62 6-74 68-134 (344)
141 3c3k_A Alanine racemase; struc 22.8 1.9E+02 0.0065 24.6 6.9 63 5-74 7-74 (285)
142 2iks_A DNA-binding transcripti 22.4 2.1E+02 0.0073 24.3 7.2 62 6-74 20-86 (293)
143 3k1y_A Oxidoreductase; structu 22.2 85 0.0029 26.0 4.2 43 4-53 10-58 (191)
144 3e3m_A Transcriptional regulat 21.7 1.7E+02 0.0057 26.1 6.5 61 7-74 71-136 (355)
145 1o1y_A Conserved hypothetical 21.6 19 0.00065 31.2 -0.1 18 112-129 52-69 (239)
146 3brq_A HTH-type transcriptiona 21.5 2.2E+02 0.0076 24.0 7.1 64 6-74 19-87 (296)
147 1z0s_A Probable inorganic poly 21.3 59 0.002 29.0 3.1 38 32-75 42-79 (278)
148 2fep_A Catabolite control prot 20.6 2.1E+02 0.0072 24.4 6.8 60 7-73 17-81 (289)
No 1
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=100.00 E-value=7.1e-52 Score=390.90 Aligned_cols=287 Identities=36% Similarity=0.654 Sum_probs=227.5
Q ss_pred CCCCCEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCC
Q psy14047 3 ATERPIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADD 81 (350)
Q Consensus 3 ~~~~p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~ 81 (350)
.+.||+|||++..... ..+... .+|+.++|+++|+++|+.+++++...+.+.+.++++.+||||||||+.|++|.
T Consensus 27 ~~~~P~IGI~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~dglil~GG~~~v~p~- 102 (315)
T 1l9x_A 27 TAKKPIIGILMQKCRN---KVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRS- 102 (315)
T ss_dssp -CCCCEEEEECEECCS---HHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTC-
T ss_pred cCCCCEEEEECCcccc---cccccCcceehHHHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCCEEEEeCCCcccChh-
Confidence 4678999999976431 101122 67899999999999999999999988777888888999999999998787632
Q ss_pred cccccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEE
Q psy14047 82 GYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMG 161 (350)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlG 161 (350)
.|.+ +. ..+++.++++.++|+++||||
T Consensus 103 ----------------~~~~----------------------------------~~---~~l~~~~~~~~~~g~~~PiLG 129 (315)
T 1l9x_A 103 ----------------DYAK----------------------------------VA---KIFYNLSIQSFDDGDYFPVWG 129 (315)
T ss_dssp ----------------HHHH----------------------------------HH---HHHHHHHHHHHHTTCCCCEEE
T ss_pred ----------------hhhH----------------------------------HH---HHHHHHHHHHHhcCCCceEEE
Confidence 1211 11 136777888776653499999
Q ss_pred ehHHHHHHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccc-ccc
Q psy14047 162 ICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDN-GLA 240 (350)
Q Consensus 162 IC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~-~L~ 240 (350)
||+|||+|+.++||++. +...+..+...|++.+.....+.||+.++..+...++....++++|+++|.++.+..+ .+|
T Consensus 130 IC~G~Qll~~a~GG~~~-~~~~~~~g~~~p~~~~~~~~~s~L~~~~~~~~~~~l~~~~~~~~~H~~~V~~~~~~~~~~l~ 208 (315)
T 1l9x_A 130 TCLGFEELSLLISGECL-LTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLK 208 (315)
T ss_dssp ETHHHHHHHHHHHSSCC-CEEEEEEEEEECCEECSTTTTCSTTTTSCHHHHHHHHHSCCEEEEEEEECBHHHHHTCHHHH
T ss_pred EChHHHHHHHHhCCccc-cccccccCCCCCeeeccCCCCChHHHhcChhhhhhccccceEEEhhhhhcCccccccccccC
Confidence 99999999999999853 4443334444677665555678899999887765555555666799999974433222 478
Q ss_pred ccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCCCCCCHH
Q psy14047 241 KEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFETEE 320 (350)
Q Consensus 241 ~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~~~~~~~ 320 (350)
++++++|++ .++..|++++++++++++||+|||||+..++|.....+||+.++++.++.||++|+++|+++.|+|.+.+
T Consensus 209 ~g~~v~A~s-~dg~ve~i~~i~~~~~~i~GVQfHPE~~~~e~~~~~~~p~s~~a~~~~~~lf~~Fv~~a~~~~~~f~~~~ 287 (315)
T 1l9x_A 209 KFFNVLTTN-TDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSES 287 (315)
T ss_dssp HHEEEEEEE-ESSSCEEEEEEEESSSCEEEESSCTTHHHHCCSSCTTCCCCHHHHHHHHHHHHHHHHHHTTSCCCCSSHH
T ss_pred CCCEEEEEc-CCCCEEEEEEeccCCCCEEEEEeCCCCCcccccccccCCccHHHHHHHHHHHHHHHHHHHhccCCCCCHH
Confidence 899999998 6777788899999878999999999999888875446789988999999999999999999999999999
Q ss_pred HHHHhhhhcccceeeeccCCCCceEEeecC
Q psy14047 321 EEKAALIYNYCPEYTAYIPGIGYDQTYLFK 350 (350)
Q Consensus 321 ~~~~~l~~n~~~~~~~~~~~~~~~~~~~~~ 350 (350)
++.+.|||||+|+||+.. .+|+|||||+
T Consensus 288 ~~~~~liyn~~p~~~~~~--~~~~q~y~f~ 315 (315)
T 1l9x_A 288 EEEKALIYQFSPIYTGNI--SSFQQCYIFD 315 (315)
T ss_dssp HHHHHSGGGCCCEECTTT--SSCSEEEEEC
T ss_pred HHHHhhhccCCCEecCCC--CCeeEEEeeC
Confidence 999999999999999854 6699999996
No 2
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=100.00 E-value=2.9e-36 Score=276.28 Aligned_cols=228 Identities=22% Similarity=0.307 Sum_probs=155.2
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCc
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDG 82 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~ 82 (350)
++||+|||++..... ....+.+. .+|+..+|+++|+++|+.|+++|+..+.+ +.++++.+||||||||+ ||+|..|
T Consensus 2 ~~~p~IGi~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~aG~~pv~lp~~~~~~-~~~~l~~~DGlil~GG~-~v~P~~y 78 (254)
T 3fij_A 2 SLKPVIGITGNRLVK-GVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPST-AVQAISLVDGLLLTGGQ-DITPQLY 78 (254)
T ss_dssp -CCCEEEEEC-------------------CHHHHHHHHHHTCEEEEECCCCGGG-HHHHHHTCSEEEECCCS-CCCGGGG
T ss_pred CCCCEEEEeCCcccc-cccccCCcchhhhhHHHHHHHHHCCCEEEEEeCCCchH-HHHHHhhCCEEEECCCC-CCChhhc
Confidence 478999999986431 01122333 88999999999999999999999987766 88889999999999999 8998777
Q ss_pred ccccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEe
Q psy14047 83 YAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGI 162 (350)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGI 162 (350)
++.+.+.. +..+..++.+ .+++++++.+++ +|||||
T Consensus 79 g~~~~~~~------------------------------------~~~~~~rd~~------~~~lir~a~~~~--~PiLGI 114 (254)
T 3fij_A 79 LEEPSQEI------------------------------------GAYFPPRDSY------EIALVRAALDAG--KPIFAI 114 (254)
T ss_dssp TCCCCTTC------------------------------------CCCCHHHHHH------HHHHHHHHHHTT--CCEEEE
T ss_pred CCccCccc------------------------------------CCcChhhhHH------HHHHHHHHHHcC--CCEEEE
Confidence 66554221 1111112222 345566666666 999999
Q ss_pred hHHHHHHHHHhcCcccc-CCcc----Cce-------eeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceee
Q psy14047 163 CLGFQLLLYTSNNENEL-RTRC----DCF-------YENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCIT 230 (350)
Q Consensus 163 C~G~QlLa~a~Gg~v~~-~~~~----~~~-------~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~ 230 (350)
|+|||+|+.++||++.. .... ..+ ....++.. ..++.+++.++.. ..++++|++.+.
T Consensus 115 C~G~Qll~~a~Gg~v~~~~~~~~~~~~~h~~~~~~~~g~~~v~~---~~~s~l~~~~~~~--------~~v~~~H~~~v~ 183 (254)
T 3fij_A 115 CRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDI---EPTSELAKHHPNK--------KLVNSLHHQFIK 183 (254)
T ss_dssp THHHHHHHHHTTCCEESSGGGSSSCCCCCBCCSCTTSCCEEEEE---CTTSSGGGTCCTT--------EEECCBCSCEES
T ss_pred CHHHHHHHHHhCCceecccccccCccccccCCCCCccceEEEEe---CCCChHHHhcCCc--------EEEEEeccchhh
Confidence 99999999999998631 1100 001 11222222 2356677665542 368999999997
Q ss_pred cCCCccccccccceEEEEeecCCCceEEEEEEcC-Ccc-EEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHH
Q psy14047 231 PSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHK-VYP-FAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQ 308 (350)
Q Consensus 231 ~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~-~~~-i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~ 308 (350)
.||++++++|++ .++. +++++++ ++| ++|+|||||++.... ..+..||++|+++
T Consensus 184 -------~l~~g~~v~a~s-~dg~---ieai~~~~~~~~~~gvQfHPE~~~~~~-------------~~~~~lf~~Fv~~ 239 (254)
T 3fij_A 184 -------KLAPSFKVTART-ADGM---IEAVEGDNLPSWYLGVQWHPELMFQTD-------------PESEQLFQALVDE 239 (254)
T ss_dssp -------SCCSSEEEEEEE-TTCC---EEEEEESSCSSCEEEESSCGGGTGGGC-------------HHHHHHHHHHHHH
T ss_pred -------ccCCCcEEEEEe-CCCc---EEEEEecCCCCeEEEEEcCCccCCCCC-------------chHHHHHHHHHHH
Confidence 799999999997 5554 8999999 887 999999999875311 2468999999999
Q ss_pred HHcCC
Q psy14047 309 ASGSH 313 (350)
Q Consensus 309 ~~~~~ 313 (350)
|++..
T Consensus 240 ~~~~~ 244 (254)
T 3fij_A 240 SKKTM 244 (254)
T ss_dssp HHSCC
T ss_pred HHHHH
Confidence 98764
No 3
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=99.95 E-value=9.5e-27 Score=204.28 Aligned_cols=177 Identities=15% Similarity=0.180 Sum_probs=121.0
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcc--cceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhh
Q psy14047 32 PASYVKAVEASGARVAPIFIGNPEAYYRKILGQ--VNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLL 109 (350)
Q Consensus 32 ~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~--~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
...++++|+++|+.++++++..+.+++.+.+.. .+++|++||+.+..
T Consensus 13 ~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~~~------------------------------- 61 (192)
T 1i1q_B 13 TWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPS------------------------------- 61 (192)
T ss_dssp HHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSCGG-------------------------------
T ss_pred HHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCcCch-------------------------------
Confidence 578899999999999999998765666554543 33588888875432
Q ss_pred hHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeee
Q psy14047 110 KIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYEN 189 (350)
Q Consensus 110 ~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~ 189 (350)
...+.. .+++ +.+++ +||||||+|||+|+.++||++. .......+..
T Consensus 62 -----------------------~~~~~~---~l~~----~~~~~--~PilGIC~G~Qll~~~~Gg~v~-~~~~~~~g~~ 108 (192)
T 1i1q_B 62 -----------------------EAGCMP---ELLT----RLRGK--LPIIGICLGHQAIVEAYGGYVG-QAGEILHGKA 108 (192)
T ss_dssp -----------------------GSTTHH---HHHH----HHBTT--BCEEEETHHHHHHHHHTSCCCC-C---CCSSEE
T ss_pred -----------------------hCchHH---HHHH----HHhcC--CCEEEECcChHHHHHHhCCEEE-eCCCcEecce
Confidence 001111 1322 23455 9999999999999999999864 2211222222
Q ss_pred eeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEE
Q psy14047 190 LALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFA 269 (350)
Q Consensus 190 ~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~ 269 (350)
..+. ...+.+|.+++.. ..++++|++.+. .+|++++++|+ .++ +++++++.+.++|
T Consensus 109 ~~~~----~~~~~l~~~~~~~--------~~v~~~H~~~v~-------~lp~~~~v~a~--~~~---~~~ai~~~~~~~~ 164 (192)
T 1i1q_B 109 TSIE----HDGQAMFAGLANP--------LPVARYHSLVGS-------NVPAGLTINAH--FNG---MVMAVRHDADRVC 164 (192)
T ss_dssp EEEE----ECCCGGGTTSCSS--------EEEEECCC---C-------CCCTTCEEEEE--ETT---EEEEEEETTTTEE
T ss_pred eEEe----cCCChHHhcCCCC--------cEEEechhhHhh-------hCCCccEEEEC--CCC---cEEEEEECCCCEE
Confidence 1111 1245677776553 369999999996 78999999996 443 5899998888999
Q ss_pred EEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047 270 GIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG 311 (350)
Q Consensus 270 gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~ 311 (350)
|+|||||++..+ .+..++++|++.+.+
T Consensus 165 gvQfHPE~~~~~---------------~g~~il~nf~~~~~~ 191 (192)
T 1i1q_B 165 GFQFHPESILTT---------------QGARLLEQTLAWAQQ 191 (192)
T ss_dssp EESSBTTSTTCT---------------THHHHHHHHHHHHTC
T ss_pred EEEccCcccCCc---------------ccHHHHHHHHHHHhc
Confidence 999999988542 367899999988754
No 4
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=99.95 E-value=5.6e-27 Score=205.18 Aligned_cols=176 Identities=21% Similarity=0.339 Sum_probs=126.3
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047 32 PASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI 111 (350)
Q Consensus 32 ~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (350)
...++++|+++|+.+++++...+.+.+.. ..+|||++|||+ +.. +
T Consensus 13 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~--~~~dglil~Gg~-~~~--~------------------------------ 57 (189)
T 1wl8_A 13 VHRIWRTLRYLGVETKIIPNTTPLEEIKA--MNPKGIIFSGGP-SLE--N------------------------------ 57 (189)
T ss_dssp HHHHHHHHHHTTCEEEEEETTCCHHHHHH--TCCSEEEECCCS-CTT--C------------------------------
T ss_pred HHHHHHHHHHCCCeEEEEECCCChHHhcc--cCCCEEEECCCC-Chh--h------------------------------
Confidence 46889999999999999998775444432 468999999997 421 1
Q ss_pred HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA 191 (350)
Q Consensus 112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~ 191 (350)
.. .+.++++++.+++ +||||||+|||+|+.++||++. .......+ ..+
T Consensus 58 ----------------------~~------~~~~~i~~~~~~~--~PilGIC~G~Q~l~~~~gg~v~-~~~~~~~G-~~~ 105 (189)
T 1wl8_A 58 ----------------------TG------NCEKVLEHYDEFN--VPILGICLGHQLIAKFFGGKVG-RGEKAEYS-LVE 105 (189)
T ss_dssp ----------------------CT------THHHHHHTGGGTC--SCEEEETHHHHHHHHHHTCEEE-ECSCCSCE-EEE
T ss_pred ----------------------hh------hHHHHHHHHhhCC--CeEEEEcHHHHHHHHHhCCcee-cCCCcccC-cee
Confidence 00 0234455554555 9999999999999999999875 22223333 223
Q ss_pred ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047 192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI 271 (350)
Q Consensus 192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv 271 (350)
+..+ ..+.+|+.++.. ..++++|++.+. ++|++++++|++ +++. +++++++++|++|+
T Consensus 106 ~~~~---~~~~l~~~~~~~--------~~~~~~h~~~v~-------~l~~~~~vla~s-~~g~---i~a~~~~~~~~~gv 163 (189)
T 1wl8_A 106 IEII---DEXEIFKGLPKR--------LKVWESHMDEVK-------ELPPKFKILARS-ETCP---IEAMKHEELPIYGV 163 (189)
T ss_dssp EEES---CC--CCTTSCSE--------EEEEECCSEEEE-------ECCTTEEEEEEE-SSCS---CSEEEESSSCEEEE
T ss_pred EEEe---cCchHHhCCCCc--------eEEEEEeeeehh-------hCCCCcEEEEEc-CCCC---EEEEEeCCceEEEE
Confidence 3222 356677766543 357888888886 789999999997 5554 78999988789999
Q ss_pred cccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047 272 QFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG 311 (350)
Q Consensus 272 QfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~ 311 (350)
|||||++.++ .+..++++|++.|++
T Consensus 164 QfHPE~~~~~---------------~g~~l~~~f~~~~~~ 188 (189)
T 1wl8_A 164 QFHPEVAHTE---------------KGEEILRNFAKLCGE 188 (189)
T ss_dssp SSCTTSTTST---------------THHHHHHHHHHHHCC
T ss_pred ecCCCcCCCc---------------chHHHHHHHHHHHhh
Confidence 9999987532 267999999999864
No 5
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=99.95 E-value=1e-26 Score=204.66 Aligned_cols=176 Identities=19% Similarity=0.253 Sum_probs=123.6
Q ss_pred HHHHHHHHHcCCeEEEEecCC-CHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhH
Q psy14047 33 ASYVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI 111 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~-~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (350)
..++++|+++|+.+.+++..+ +.+++.. ..+||||++||+.+.. .
T Consensus 15 ~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dglil~gG~~~~~--~------------------------------ 60 (195)
T 1qdl_B 15 YNIAQIVGELGSYPIVIRNDEISIKGIER--IDPDRLIISPGPGTPE--K------------------------------ 60 (195)
T ss_dssp HHHHHHHHHTTCEEEEEETTTSCHHHHHH--HCCSEEEECCCSSCTT--S------------------------------
T ss_pred HHHHHHHHhCCCEEEEEeCCCCCHHHHhh--CCCCEEEECCCCCChh--h------------------------------
Confidence 577899999999999999864 3333322 2689999988874322 0
Q ss_pred HHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA 191 (350)
Q Consensus 112 ~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~ 191 (350)
.++ .. .+.++++++ +++ +||||||+|||+|+.++||++. ......++.+.+
T Consensus 61 --------------------~~~-~~----~~~~~i~~~-~~~--~PvLGIC~G~QlL~~~~gg~v~-~~~~~~~g~~~~ 111 (195)
T 1qdl_B 61 --------------------RED-IG----VSLDVIKYL-GKR--TPILGVCLGHQAIGYAFGAKIR-RARKVFHGKISN 111 (195)
T ss_dssp --------------------HHH-HT----THHHHHHHH-TTT--SCEEEETHHHHHHHHHTTCEEE-EEEEEEEEEEEE
T ss_pred --------------------hhh-hh----HHHHHHHHh-cCC--CcEEEEehHHHHHHHHhCCEEe-ccCCCcCCCceE
Confidence 000 00 022444443 444 9999999999999999999874 222223344444
Q ss_pred ceeecCCCCC--cccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEE
Q psy14047 192 LEFMPSFRQS--LLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFA 269 (350)
Q Consensus 192 i~~~~~~~~~--~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~ 269 (350)
+..+ .++ .+|+.++.. ..++++|++++. .+|++++++|++ .+++ .++++++++++++
T Consensus 112 v~~~---~~~~~~l~~~~~~~--------~~v~~~H~~~v~-------~l~~~~~vla~s-~~~g--~i~a~~~~~~~~~ 170 (195)
T 1qdl_B 112 IILV---NNSPLSLYYGIAKE--------FKATRYHSLVVD-------EVHRPLIVDAIS-AEDN--EIMAIHHEEYPIY 170 (195)
T ss_dssp EEEC---CSSCCSTTTTCCSE--------EEEEEEEEEEEE-------CCCTTEEEEEEE-SSSC--CEEEEEESSSSEE
T ss_pred EEEC---CCCHhHHHhcCCCc--------eEEeccccchhh-------hCCCCcEEEEEE-CCCC--cEEEEEeCCCCEE
Confidence 4432 244 788777654 369999999997 789999999995 2333 3899999888899
Q ss_pred EEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHH
Q psy14047 270 GIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS 307 (350)
Q Consensus 270 gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~ 307 (350)
|+|||||++.++ .+..++++|++
T Consensus 171 gvQfHPE~~~~~---------------~g~~l~~~f~~ 193 (195)
T 1qdl_B 171 GVQFHPESVGTS---------------LGYKILYNFLN 193 (195)
T ss_dssp EESSBTTSTTCT---------------THHHHHHHHHH
T ss_pred EEecCCCCCCCc---------------cHHHHHHHHHh
Confidence 999999988532 26789999986
No 6
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=99.95 E-value=2.6e-27 Score=211.09 Aligned_cols=175 Identities=17% Similarity=0.272 Sum_probs=126.2
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCC-CcccccCCcccccceeeeecccchhhhhHHHhhhhhh
Q psy14047 32 PASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGG-GASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLK 110 (350)
Q Consensus 32 ~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG-~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (350)
..+|+++|+++|+.+++++++.+.+. +..+|||||||| +.++..
T Consensus 26 ~~~~~~~l~~~G~~~~vv~~~~~~~~----l~~~DglIl~GG~p~~~~~------------------------------- 70 (212)
T 2a9v_A 26 THREWRVLRELGVDTKIVPNDIDSSE----LDGLDGLVLSGGAPNIDEE------------------------------- 70 (212)
T ss_dssp TCHHHHHHHHTTCBCCEEETTSCGGG----GTTCSEEEEEEECSCGGGT-------------------------------
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHH----HhCCCEEEECCCCCCCCcc-------------------------------
Confidence 46799999999999999998754433 345999999999 655420
Q ss_pred HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeee
Q psy14047 111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENL 190 (350)
Q Consensus 111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~ 190 (350)
..... .+.+++. +++ +||||||+|||+|+.++||++. ....+ +.+..
T Consensus 71 ----------------------~~~~~----~l~~~~~---~~~--~PiLGIC~G~Qll~~~lGg~v~-~~~~~-~~G~~ 117 (212)
T 2a9v_A 71 ----------------------LDKLG----SVGKYID---DHN--YPILGICVGAQFIALHFGASVV-KAKHP-EFGKT 117 (212)
T ss_dssp ----------------------GGGHH----HHHHHHH---HCC--SCEEEETHHHHHHHHHTTCEEE-EEEEE-EEEEE
T ss_pred ----------------------cccch----hHHHHHH---hCC--CCEEEEChHHHHHHHHhCCEEE-cCCCc-ccCce
Confidence 00011 1233333 344 9999999999999999999874 22212 22233
Q ss_pred eceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047 191 ALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG 270 (350)
Q Consensus 191 ~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g 270 (350)
++.++ ..+.+|+.++.. ..++++|++.+. .+|++++++|++ +++. ++++++++.+++|
T Consensus 118 ~v~~~---~~~~l~~~~~~~--------~~v~~~H~~~v~-------~l~~~~~vlA~s-~d~~---i~ai~~~~~~i~g 175 (212)
T 2a9v_A 118 KVSVM---HSENIFGGLPSE--------ITVWENHNDEII-------NLPDDFTLAASS-ATCQ---VQGFYHKTRPIYA 175 (212)
T ss_dssp EEEES---CCCGGGTTCCSE--------EEEEEEEEEEEE-------SCCTTEEEEEEC-SSCS---CSEEEESSSSEEE
T ss_pred eeEEC---CCChhHhcCCCc--------eEEEeEhhhhHh-------hCCCCcEEEEEe-CCCC---EEEEEECCCCEEE
Confidence 44332 356788776543 358999999997 789999999997 5554 7899988778999
Q ss_pred EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047 271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG 311 (350)
Q Consensus 271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~ 311 (350)
+|||||++..+ .+..++++|++.|++
T Consensus 176 vQfHPE~~~~~---------------~g~~l~~~F~~~~~~ 201 (212)
T 2a9v_A 176 TQFHPEVEHTQ---------------YGRDIFRNFIGICAS 201 (212)
T ss_dssp ESSCTTSTTST---------------THHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCc---------------cHHHHHHHHHHHHHH
Confidence 99999987421 367999999999865
No 7
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=99.94 E-value=9.4e-27 Score=208.27 Aligned_cols=190 Identities=17% Similarity=0.215 Sum_probs=131.4
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccc
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAK 85 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~ 85 (350)
.+.|+|+.... .|+ ..++++|+++|+.++++|++.+.+.+.. ..+||||||||+.+.. .
T Consensus 24 ~~~I~iiD~g~------------~~~-~~i~~~l~~~G~~~~vv~~~~~~~~l~~--~~~dglil~Gg~~~~~--~---- 82 (218)
T 2vpi_A 24 EGAVVILDAGA------------QYG-KVIDRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPNSVY--A---- 82 (218)
T ss_dssp TTCEEEEECST------------TTT-HHHHHHHHHTTCCEEEECTTCCHHHHHH--HTCSEEEEEC-------------
T ss_pred CCeEEEEECCC------------chH-HHHHHHHHHCCCEEEEEECCCChHHHhh--cCCCEEEECCCCcccc--c----
Confidence 36788876432 122 5677999999999999999887665543 5799999999984321 0
Q ss_pred cceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHH
Q psy14047 86 AGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLG 165 (350)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G 165 (350)
+. ... +.+ +..+++ +||||||+|
T Consensus 83 ---------------~~------------------------------~~~-------~~~---~~~~~~--~PilGIC~G 105 (218)
T 2vpi_A 83 ---------------ED------------------------------APW-------FDP---AIFTIG--KPVLGICYG 105 (218)
T ss_dssp -----------------------------------------------CCC-------CCG---GGGTSS--CCEEEETHH
T ss_pred ---------------cc------------------------------chh-------HHH---HHHHcC--CCEEEEcHH
Confidence 00 000 000 112344 999999999
Q ss_pred HHHHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceE
Q psy14047 166 FQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKV 245 (350)
Q Consensus 166 ~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~v 245 (350)
||+|+.++||++. ..... +....++... .+++||+.++.. ..++++|++++. .+|+++++
T Consensus 106 ~Qll~~~~GG~v~-~~~~~-~~G~~~v~~~---~~~~l~~~l~~~--------~~v~~~H~~~v~-------~l~~~~~v 165 (218)
T 2vpi_A 106 MQMMNKVFGGTVH-KKSVR-EDGVFNISVD---NTCSLFRGLQKE--------EVVLLTHGDSVD-------KVADGFKV 165 (218)
T ss_dssp HHHHHHHTTCCEE-EEEEC-SCEEEEEEEC---TTSGGGTTCCSE--------EEEEECSEEEES-------SCCTTCEE
T ss_pred HHHHHHHhCCceE-eCCCC-cccEEEEEEc---cCChhHhcCCCC--------cEEeehhhhHhh-------hcCCCCEE
Confidence 9999999999974 22212 2223444432 357788877653 368999999996 78999999
Q ss_pred EEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHH-HHHHcCC
Q psy14047 246 LSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLV-SQASGSH 313 (350)
Q Consensus 246 la~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv-~~~~~~~ 313 (350)
+|++ ++ +++++++++.+++|+|||||++..+ .+..||++|+ +.|+...
T Consensus 166 lA~s--~~---~i~ai~~~~~~i~gvQfHPE~~~~~---------------~g~~l~~~F~~~~~~~~~ 214 (218)
T 2vpi_A 166 VARS--GN---IVAGIANESKKLYGAQFHPEVGLTE---------------NGKVILKNFLYDIAGCSG 214 (218)
T ss_dssp EEEE--TT---EEEEEEETTTTEEEESSCTTSTTST---------------THHHHHHHHHTTTTCCCC
T ss_pred EEEc--CC---eEEEEEECCCCEEEEEcCCCCCCCh---------------hHHHHHHHHHHHHhCCCC
Confidence 9995 33 5999998888999999999987531 3689999999 8886543
No 8
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=99.94 E-value=9e-26 Score=216.13 Aligned_cols=174 Identities=17% Similarity=0.259 Sum_probs=126.6
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE 112 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (350)
.+++++|+++|+.++++|++.+.+++.. ..+|||+|+||+.|..
T Consensus 202 ~ni~r~L~~~G~~v~vvp~~~~~e~i~~--~~~DGliLsGGPgdp~---------------------------------- 245 (379)
T 1a9x_B 202 RNILRMLVDRGCRLTIVPAQTSAEDVLK--MNPDGIFLSNGPGDPA---------------------------------- 245 (379)
T ss_dssp HHHHHHHHHTTEEEEEEETTCCHHHHHT--TCCSEEEECCCSBCST----------------------------------
T ss_pred HHHHHHHHHCCCEEEEEeccCCHHHHhh--cCCCEEEEeCCCCChH----------------------------------
Confidence 6799999999999999999877655542 3799999999986532
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL 192 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i 192 (350)
... ..++.++++.+++ +||||||+|||+|+.++||++. ....+.++...|+
T Consensus 246 --------------------~~~------~~~~~Ir~~~~~~--~PILGIClG~QLLa~A~GG~v~-k~~~gh~g~n~pv 296 (379)
T 1a9x_B 246 --------------------PCD------YAITAIQKFLETD--IPVFGICLGHQLLALASGAKTV-KMKFGHHGGNHPV 296 (379)
T ss_dssp --------------------TCH------HHHHHHHHHTTSC--CCEEEETHHHHHHHHHTTCCEE-EEEEEEEEEEEEE
T ss_pred --------------------HHH------HHHHHHHHHHHcC--CCEEEECchHHHHHHHhCcEEE-ecccccccCceee
Confidence 011 1345566666665 9999999999999999999975 3333444444444
Q ss_pred eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047 193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ 272 (350)
Q Consensus 193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ 272 (350)
... ....+ ..+.++|+++|... .||+++++++++.+|+. +++++++++|+||+|
T Consensus 297 ~~~---~~g~v---------------~its~~H~~aV~~~-----~Lp~~~~v~a~s~~Dg~---ieai~~~~~pi~gVQ 350 (379)
T 1a9x_B 297 KDV---EKNVV---------------MITAQNHGFAVDEA-----TLPANLRVTHKSLFDGT---LQGIHRTDKPAFSFQ 350 (379)
T ss_dssp EET---TTTEE---------------EEEEEEEEEEECST-----TCCTTEEEEEEETTTCC---EEEEEESSSSEEEES
T ss_pred Eec---CCCcE---------------EEEecCccceEecc-----cCCCCeEEEEEeCCCCc---EEEEEECCCCEEEEE
Confidence 211 01111 13567899999743 48999999999633444 899999888999999
Q ss_pred ccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047 273 FHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG 311 (350)
Q Consensus 273 fHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~ 311 (350)
||||.++.+. ++.+||+.|++.|++
T Consensus 351 FHPE~~~~p~--------------d~~~Lf~~Fl~~~~~ 375 (379)
T 1a9x_B 351 GNPEASPGPH--------------DAAPLFDHFIELIEQ 375 (379)
T ss_dssp SCTTCSSSCS--------------TTTHHHHHHHHHHHH
T ss_pred eCCcCCCCcc--------------cHHHHHHHHHHHHHH
Confidence 9999886421 256899999999865
No 9
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.93 E-value=2.4e-25 Score=223.35 Aligned_cols=197 Identities=17% Similarity=0.220 Sum_probs=138.8
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcc
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGY 83 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~ 83 (350)
+.++.|+|+-... +| ...++++|+++|+.+.++|++.+.+++..+ .+||||||||+.++....
T Consensus 5 ~~~~~IlIlD~g~------------~~-~~~i~r~lr~~G~~~~i~p~~~~~~~i~~~--~~dgiILsGGp~s~~~~~-- 67 (525)
T 1gpm_A 5 IHKHRILILDFGS------------QY-TQLVARRVRELGVYCELWAWDVTEAQIRDF--NPSGIILSGGPESTTEEN-- 67 (525)
T ss_dssp TTSSEEEEEECSC------------TT-HHHHHHHHHHTTCEEEEEESCCCHHHHHHH--CCSEEEECCCSSCTTSTT--
T ss_pred CCCCEEEEEECCC------------cc-HHHHHHHHHHCCCEEEEEECCCCHHHHhcc--CCCEEEECCcCccccccC--
Confidence 3557899986432 22 267889999999999999998887777653 579999999996553100
Q ss_pred cccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEeh
Q psy14047 84 AKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGIC 163 (350)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC 163 (350)
.| + .. ++..+.| +||||||
T Consensus 68 -~~--------------------------------------~-------~~-------------~~~~~~g--~PvLGIC 86 (525)
T 1gpm_A 68 -SP--------------------------------------R-------AP-------------QYVFEAG--VPVFGVC 86 (525)
T ss_dssp -CC--------------------------------------C-------CC-------------GGGGTSS--SCEEEET
T ss_pred -Cc--------------------------------------c-------hH-------------HHHHHCC--CCEEEEC
Confidence 00 0 00 0112344 9999999
Q ss_pred HHHHHHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccc
Q psy14047 164 LGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEW 243 (350)
Q Consensus 164 ~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~ 243 (350)
+|||+|+.++||++. ..... +.+...+... ..++||++++............++++|++.+. .+|+++
T Consensus 87 ~G~Qlla~~~GG~V~-~~~~~-e~G~~~v~~~---~~~~L~~~l~~~~~~~~~~~~~v~~~H~~~V~-------~lp~g~ 154 (525)
T 1gpm_A 87 YGMQTMAMQLGGHVE-ASNER-EFGYAQVEVV---NDSALVRGIEDALTADGKPLLDVWMSHGDKVT-------AIPSDF 154 (525)
T ss_dssp HHHHHHHHHHTCEEE-CCSSC-EEEEEEEEEC---SCCTTTTTCCSEECTTSCEEEEEEEEECSEEE-------ECCTTC
T ss_pred hHHHHHHHHcCCEEE-eCCCc-ccceEEEEeC---CCCHhhccCccccccccccceEEEEEccceee-------eCCCCC
Confidence 999999999999975 23222 2233344432 34678888765221111113469999999997 899999
Q ss_pred eEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHH
Q psy14047 244 KVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQA 309 (350)
Q Consensus 244 ~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~ 309 (350)
+++|++ +++. ++++++++.++||+|||||++..+ .+..++++|+..+
T Consensus 155 ~v~A~s-~~~~---i~ai~~~~~~i~gvQFHPE~~~~~---------------~g~~ll~nF~~~i 201 (525)
T 1gpm_A 155 ITVAST-ESCP---FAIMANEEKRFYGVQFHPEVTHTR---------------QGMRMLERFVRDI 201 (525)
T ss_dssp EEEEEC-SSCS---CSEEEETTTTEEEESBCTTSTTST---------------THHHHHHHHHHTT
T ss_pred EEEEEC-CCCC---EEEEEECCCCEEEEecCCCCCcch---------------hHHHHHHHHHHhh
Confidence 999997 5554 789999888999999999987532 3789999999543
No 10
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.93 E-value=3.1e-25 Score=222.53 Aligned_cols=206 Identities=17% Similarity=0.225 Sum_probs=136.5
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcc
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGY 83 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~ 83 (350)
|++..|+|+-.-. +| ...++++|+++|+.+.++|++.+.+++.. .++||||||||+.++...
T Consensus 8 ~~~~~I~IlD~g~------------~~-~~~i~r~lr~~Gv~~~i~p~~~~~~~i~~--~~~dgIILsGGp~sv~~~--- 69 (527)
T 3tqi_A 8 IHQHRILILDFGS------------QY-AQLIARRVREIGVYCELMPCDIDEETIRD--FNPHGIILSGGPETVTLS--- 69 (527)
T ss_dssp CCCSEEEEEECSC------------TT-HHHHHHHHHHHTCEEEEEETTCCSSSSTT--TCCSEEEECCCCC--------
T ss_pred ccCCeEEEEECCC------------cc-HHHHHHHHHHCCCeEEEEECCCCHHHHHh--cCCCEEEECCcCcccccC---
Confidence 3456788886432 22 26788999999999999999876655432 156999999998654300
Q ss_pred cccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEeh
Q psy14047 84 AKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGIC 163 (350)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC 163 (350)
.... + ..+..+.| +||||||
T Consensus 70 ---------------------------------------------------~~~~----~---~~~~~~~~--~PvLGIC 89 (527)
T 3tqi_A 70 ---------------------------------------------------HTLR----A---PAFIFEIG--CPVLGIC 89 (527)
T ss_dssp -----------------------------------------------------------C---CCSTTTSS--SCEEEET
T ss_pred ---------------------------------------------------CChh----h---HHHHHhcC--CCEEEEC
Confidence 0000 0 11122344 9999999
Q ss_pred HHHHHHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccc
Q psy14047 164 LGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEW 243 (350)
Q Consensus 164 ~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~ 243 (350)
+|||+|+.++||++. ...... .+...+... ..+.+|++++..+.........++++|++.+. .+|+++
T Consensus 90 ~G~Qlla~~lGG~V~-~~~~~e-~G~~~v~~~---~~~~l~~~l~~~~~~~~~~~~~v~~~H~d~v~-------~lp~g~ 157 (527)
T 3tqi_A 90 YGMQTMAYQLGGKVN-RTAKAE-FGHAQLRVL---NPAFLFDGIEDQVSPQGEPLLDVWMSHGDIVS-------ELPPGF 157 (527)
T ss_dssp HHHHHHHHHSSSCBC------C-EEEEEEEES---SCTTTTSSCCSBCCTTSCCEEEEEEESSSCBC-------SCCTTC
T ss_pred hHHHHHHHHcCCeEE-eCCCcc-ccceEEEEc---CCChhhcCCccccccccccceEEEEEcccchh-------ccCCCC
Confidence 999999999999975 332222 233344432 34678888765211000112469999999997 899999
Q ss_pred eEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCCCCCC
Q psy14047 244 KVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFET 318 (350)
Q Consensus 244 ~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~~~~~ 318 (350)
+++|++ +++ .+++++++++++||+|||||++.++ .+..++++|+...-.-...++-
T Consensus 158 ~v~A~s-~~~---~i~ai~~~~~~~~GvQFHPE~~~t~---------------~G~~ll~nF~~~i~~~~~~w~~ 213 (527)
T 3tqi_A 158 EATACT-DNS---PLAAMADFKRRFFGLQFHPEVTHTP---------------QGHRILAHFVIHICQCIPNWTT 213 (527)
T ss_dssp EEEEEE-TTE---EEEEEECSSSCEEEESBCSSSTTST---------------THHHHHHHHHHTTSCCCCCCCS
T ss_pred EEEEEe-CCC---cEEEEEcCCCCEEEEEecccccccc---------------ccchhhhhhhhhcccccchhhH
Confidence 999996 443 4899999888999999999987542 3678999999555444444443
No 11
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=99.92 E-value=3e-25 Score=201.32 Aligned_cols=163 Identities=16% Similarity=0.163 Sum_probs=113.0
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE 112 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (350)
.++.+++++.|..+.+++++.. +.+...++.+||||||||+.+.. + +.
T Consensus 27 ~~i~~~l~~~G~~v~v~~~~~~-~~~~~~l~~~Dglil~GG~~~~~--~--~~--------------------------- 74 (239)
T 1o1y_A 27 GMMEDIFREKNWSFDYLDTPKG-EKLERPLEEYSLVVLLGGYMGAY--E--EE--------------------------- 74 (239)
T ss_dssp THHHHHHHHTTCEEEEECGGGT-CCCSSCGGGCSEEEECCCSCCTT--C--TT---------------------------
T ss_pred hHHHHHHHhCCCcEEEeCCcCc-cccccchhcCCEEEECCCCcccc--C--Cc---------------------------
Confidence 4567888999998887776432 12223467889999999985432 0 00
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL 192 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i 192 (350)
....+. .+.++++++.+++ +||||||+|||+|+.++||++. ....+.+....++
T Consensus 75 -------------------~~~~l~----~~~~~i~~~~~~~--~PiLGIC~G~QlL~~alGG~v~-~~~~g~~~G~~~v 128 (239)
T 1o1y_A 75 -------------------KYPFLK----YEFQLIEEILKKE--IPFLGICLGSQMLAKVLGASVY-RGKNGEEIGWYFV 128 (239)
T ss_dssp -------------------TCTHHH----HHHHHHHHHHHHT--CCEEEETHHHHHHHHHTTCCEE-ECTTCCEEEEEEE
T ss_pred -------------------cChhHH----HHHHHHHHHHHCC--CCEEEEchhHHHHHHHcCCeEe-cCCCCCccccEEE
Confidence 011111 2456666666666 9999999999999999999975 3332233334454
Q ss_pred eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047 193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ 272 (350)
Q Consensus 193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ 272 (350)
.. ...+++|+.++.. ..++++|++.+ .+|++++++|++ +++. ++++++++ ++|+|
T Consensus 129 ~~---~~~~~l~~~~~~~--------~~~~~~H~~~v--------~lp~~~~vlA~s-~~~~---iea~~~~~--i~gvQ 183 (239)
T 1o1y_A 129 EK---VSDNKFFREFPDR--------LRVFQWHGDTF--------DLPRRATRVFTS-EKYE---NQGFVYGK--AVGLQ 183 (239)
T ss_dssp EE---CCCCGGGTTSCSE--------EEEEEEESEEE--------CCCTTCEEEEEC-SSCS---CSEEEETT--EEEES
T ss_pred EE---CCCCchHHhCCCC--------ceeEeecCCcc--------ccCCCCEEEEEc-CCCC---EEEEEECC--EEEEE
Confidence 42 2456788777654 36899999988 589999999997 5555 67999875 99999
Q ss_pred ccCCcC
Q psy14047 273 FHPEKN 278 (350)
Q Consensus 273 fHPE~~ 278 (350)
||||++
T Consensus 184 fHPE~~ 189 (239)
T 1o1y_A 184 FHIEVG 189 (239)
T ss_dssp SBSSCC
T ss_pred eCccCC
Confidence 999975
No 12
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.92 E-value=2.2e-25 Score=222.55 Aligned_cols=176 Identities=18% Similarity=0.233 Sum_probs=129.4
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE 112 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (350)
..++++|+++|+.+.++|++.+.+.+..+ .+||||||||+.++.... .|.
T Consensus 13 ~~i~r~l~~~G~~~~i~p~~~~~~~i~~~--~~dgiIlsGGp~s~~~~~---~~~------------------------- 62 (503)
T 2ywb_A 13 RLIARRLRELRAFSLILPGDAPLEEVLKH--RPQALILSGGPRSVFDPD---APR------------------------- 62 (503)
T ss_dssp HHHHHHHHTTTCCEEEEETTCCHHHHHTT--CCSEEEECCCSSCSSCTT---CCC-------------------------
T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHhc--CCCEEEECCCCchhccCC---Ccc-------------------------
Confidence 78899999999999999998777766542 579999999996543100 000
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL 192 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i 192 (350)
.+ ++..+.| +||||||+|||+|+.++||++. ..... +.+...+
T Consensus 63 --------------------~~-------------~~~~~~~--~PvLGIC~G~Qlla~~~GG~v~-~~~~~-e~G~~~v 105 (503)
T 2ywb_A 63 --------------------PD-------------PRLFSSG--LPLLGICYGMQLLAQELGGRVE-RAGRA-EYGKALL 105 (503)
T ss_dssp --------------------CC-------------GGGGCSS--CCEEEETHHHHHHHHTTTCEEE-CC----CEEEEEC
T ss_pred --------------------hH-------------HHHHhCC--CCEEEECHHHHHHHHHhCCeEe-eCCCC-ccceEEE
Confidence 00 0112344 9999999999999999999975 22222 2233444
Q ss_pred eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047 193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ 272 (350)
Q Consensus 193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ 272 (350)
... . +.||++++.. ..++++|++.+. .+|++++++|++ +++. +++++++++++||+|
T Consensus 106 ~~~---~-~~l~~~~~~~--------~~v~~~H~~~v~-------~lp~g~~v~A~s-~~~~---i~ai~~~~~~~~gvQ 162 (503)
T 2ywb_A 106 TRH---E-GPLFRGLEGE--------VQVWMSHQDAVT-------APPPGWRVVAET-EENP---VAAIASPDGRAYGVQ 162 (503)
T ss_dssp SEE---C-SGGGTTCCSC--------CEEEEECSCEEE-------ECCTTCEEEEEC-SSCS---CSEEECTTSSEEEES
T ss_pred Eec---C-cHHhhcCCCc--------cEEEEECCCccc-------cCCCCCEEEEEE-CCCC---EEEEEeCCCCEEEEe
Confidence 432 2 6788877653 369999999997 899999999997 5554 889999888999999
Q ss_pred ccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCC
Q psy14047 273 FHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSH 313 (350)
Q Consensus 273 fHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~ 313 (350)
||||++..+ .+..++++|++.|....
T Consensus 163 FHPE~~~~~---------------~g~~ll~~F~~~~~~~~ 188 (503)
T 2ywb_A 163 FHPEVAHTP---------------KGMQILENFLELAGVKR 188 (503)
T ss_dssp BCTTSTTST---------------THHHHHHHHHHHTTCCC
T ss_pred cCCCccccc---------------ccHHHHHHHHHHhhhhc
Confidence 999987532 37899999998886553
No 13
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.92 E-value=5.8e-25 Score=221.47 Aligned_cols=207 Identities=19% Similarity=0.262 Sum_probs=136.0
Q ss_pred CCCCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCC
Q psy14047 2 EATERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADD 81 (350)
Q Consensus 2 ~~~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~ 81 (350)
|-.....|.|+-.-+. | ...++++|+++|+.+.++|++.+.+.+.. ..+||||||||+.++....
T Consensus 3 ~~~~~~~IlilD~Gs~------------~-~~~I~r~lre~Gv~~eiv~~~~~~~~i~~--~~~dgIIlsGGp~s~~~~~ 67 (556)
T 3uow_A 3 EGEEYDKILVLNFGSQ------------Y-FHLIVKRLNNIKIFSETKDYGVELKDIKD--MNIKGVILSGGPYSVTEAG 67 (556)
T ss_dssp ----CCEEEEEESSCT------------T-HHHHHHHHHHTTCCEEEEETTCCGGGTTT--SCEEEEEECCCSCCTTSTT
T ss_pred CCCCCCEEEEEECCCc------------c-HHHHHHHHHHCCCeEEEEECCCCHHHHhh--cCCCEEEECCCCCcccccC
Confidence 3344567777764321 1 36788999999999999999776655432 3789999999997653100
Q ss_pred cccccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEE
Q psy14047 82 GYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMG 161 (350)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlG 161 (350)
.| . ... .+++.+.+ +| +||||
T Consensus 68 ---~~-------------------------------------------~--~~~------~l~~~a~~---~g--~PvLG 88 (556)
T 3uow_A 68 ---SP-------------------------------------------H--LKK------EVFEYFLE---KK--IPIFG 88 (556)
T ss_dssp ---CC-------------------------------------------C--CCH------HHHHHHHH---TT--CCEEE
T ss_pred ---Cc-------------------------------------------c--hhH------HHHHHhhh---cC--CCEEE
Confidence 00 0 011 14444433 34 99999
Q ss_pred ehHHHHHHHHHhcCccccCCccCceeeeeeceeecCC----------------------------CCCcccccC-CchhH
Q psy14047 162 ICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSF----------------------------RQSLLYSRA-PIHVL 212 (350)
Q Consensus 162 IC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~----------------------------~~~~lf~~~-~~~~~ 212 (350)
||+|||+|+.++||++. ..... +.+...+.+.... ..+.+|.++ +.
T Consensus 89 IC~G~QlLa~~lGG~V~-~~~~~-E~G~~~l~~~~~~~~~~~p~v~~~~~~~~~mg~~~n~~~~~~~~~Lf~gl~~~--- 163 (556)
T 3uow_A 89 ICYGMQEIAVQMNGEVK-KSKTS-EYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKSD--- 163 (556)
T ss_dssp ETHHHHHHHHHTTCEEE-EEEEE-EEEEEEEEECCTTGGGGCSGGGGC---CCHHHHHTTSCCCC--CGGGTTCCSS---
T ss_pred ECHHHHHHHHHhCCcEe-cCCCc-ccCCcceeeccCcccccccceecccccccccccccccccccccchhhcccccC---
Confidence 99999999999999974 22211 2222333332211 122466655 43
Q ss_pred HhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCch
Q psy14047 213 QELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTR 292 (350)
Q Consensus 213 ~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~ 292 (350)
...++++|++.+. .+|++++++|++ +++ .+++++++++++||+|||||++..+
T Consensus 164 -----~~~v~~~H~d~V~-------~lp~g~~vlA~s-~~~---~i~ai~~~~~~i~GvQFHPE~~~~~----------- 216 (556)
T 3uow_A 164 -----ITTVWMNHNDEVT-------KIPENFYLVSSS-ENC---LICSIYNKEYNIYGVQYHPEVYESL----------- 216 (556)
T ss_dssp -----EEEEEEEEEEEEE-------ECCTTCEEEEEE-TTE---EEEEEEETTTTEEEESSCTTSTTST-----------
T ss_pred -----ceEEEEEccceee-------ccCCCcEEEEEe-CCC---CEEEEEECCCCEEEEEcCCCCCccc-----------
Confidence 2469999999997 899999999996 544 4899999888999999999987542
Q ss_pred HHHHhHHHHHHHHHHHHHcCCCCCCC
Q psy14047 293 IAIENARYFFDWLVSQASGSHHSFET 318 (350)
Q Consensus 293 ~~~~~~~~i~~~Fv~~~~~~~~~~~~ 318 (350)
.+..++++|+.....-...++-
T Consensus 217 ----~G~~ll~nFl~~i~g~~~~~~~ 238 (556)
T 3uow_A 217 ----DGELMFYNFAYNICKCKKQFDP 238 (556)
T ss_dssp ----THHHHHHHHHTTTTCCCC-CCH
T ss_pred ----cchHHHHHHHHHhhcccccccc
Confidence 3788999999544333344443
No 14
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.92 E-value=1e-24 Score=190.18 Aligned_cols=171 Identities=16% Similarity=0.230 Sum_probs=112.1
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE 112 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (350)
.+|+++|+++|+.+++++.. + .++.+|||++|||+.+. |.+..
T Consensus 13 ~~~~~~l~~~G~~~~~~~~~---~----~~~~~dglil~GG~~~~---------------------~~~~~--------- 55 (186)
T 2ywj_A 13 EEHEEAIKKAGYEAKKVKRV---E----DLEGIDALIIPGGESTA---------------------IGKLM--------- 55 (186)
T ss_dssp HHHHHHHHHTTSEEEEECSG---G----GGTTCSEEEECCSCHHH---------------------HHHHH---------
T ss_pred HHHHHHHHHCCCEEEEECCh---H----HhccCCEEEECCCCchh---------------------hhhhh---------
Confidence 56789999999999988742 1 36788999999997322 11110
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL 192 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i 192 (350)
... .+.+.++ +++ +||||||+|||+|+.++||++..++..+......+.
T Consensus 56 -----------------------~~~---~~~~~i~---~~~--~PilGIC~G~Qll~~~~gg~~~~lg~~~~~~~~~~~ 104 (186)
T 2ywj_A 56 -----------------------KKY---GLLEKIK---NSN--LPILGTCAGMVLLSKGTGINQILLELMDITVKRNAY 104 (186)
T ss_dssp -----------------------HHT---THHHHHH---TCC--CCEEEETHHHHHHSSCCSSCCCCCCCSSEEEETTTT
T ss_pred -----------------------hcc---CHHHHHH---hcC--CcEEEECHHHHHHHHHhCCCcCccCCCceeEEeccC
Confidence 000 1334444 444 999999999999999999985423322211110000
Q ss_pred eeecCC-CCCcccccCCchhHHhhcccceEEEeecceeecCCCccccc-cccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047 193 EFMPSF-RQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGL-AKEWKVLSTNSNNRGLKFISSVEHKVYPFAG 270 (350)
Q Consensus 193 ~~~~~~-~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L-~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g 270 (350)
...... ..+.++..+ . ...++++|++++. .+ |++++++|++ + + ++++++++ +++|
T Consensus 105 ~~~~~~~~~~~~~~~~-~--------~~~~~~~H~~~v~-------~l~~~~~~v~a~s--d-~--~~~a~~~~--~~~g 161 (186)
T 2ywj_A 105 GRQVDSFEKEIEFKDL-G--------KVYGVFIRAPVVD-------KILSDDVEVIARD--G-D--KIVGVKQG--KYMA 161 (186)
T ss_dssp CSSSCCEEEEEEETTT-E--------EEEEEESSCCEEE-------EECCTTCEEEEEE--T-T--EEEEEEET--TEEE
T ss_pred CCcccceecccccccC-C--------cEEEEEEecceee-------ecCCCCeEEEEEE--C-C--EEEEEeeC--CEEE
Confidence 000000 011233332 1 2358899999997 78 9999999995 3 3 48899975 6999
Q ss_pred EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047 271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG 311 (350)
Q Consensus 271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~ 311 (350)
+|||||++. .+..++++|++.|++
T Consensus 162 vQfHPE~~~-----------------~g~~l~~~F~~~~~~ 185 (186)
T 2ywj_A 162 LSFHPELSE-----------------DGYKVYKYFVENCVK 185 (186)
T ss_dssp ESSCGGGST-----------------THHHHHHHHHHHHTC
T ss_pred EECCCCcCC-----------------chhHHHHHHHHHHhh
Confidence 999999763 267899999999865
No 15
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=99.92 E-value=2.3e-25 Score=198.14 Aligned_cols=123 Identities=17% Similarity=0.228 Sum_probs=76.0
Q ss_pred HhhCCCCccEEEehHHHHHHHHHhcCcccc-------CCccCceeeeee----------ceeecCCCCCcccccCCchhH
Q psy14047 150 FNENRDYFPIMGICLGFQLLLYTSNNENEL-------RTRCDCFYENLA----------LEFMPSFRQSLLYSRAPIHVL 212 (350)
Q Consensus 150 ~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~-------~~~~~~~~~~~~----------i~~~~~~~~~~lf~~~~~~~~ 212 (350)
..+.+ +||||||+|||+|+.++|+++.. +...+......+ ...+.....+.+|.+++..
T Consensus 68 ~~~~~--~PvlGIClG~QlL~~~~g~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-- 143 (211)
T 4gud_A 68 VKRVE--KPLLGICLGMQLLGKLSEEKGQKADEIVQCLGLVDGEVRLLQTGDLPLPHMGWNTVQVKEGHPLFNGIEPD-- 143 (211)
T ss_dssp HHHCC--SCEEEETHHHHTTSSEECCC----CCCEECCCSSSCEEEECCCTTSCSSEEEEECCEECTTCGGGTTCCTT--
T ss_pred HHHcC--CCEEEEchhHhHHHHHhCCcccccCCccccceeccceEEEcccCCcceeeccceeeeeeccChhhcCCCCC--
Confidence 33455 99999999999999999887531 111111111000 0001112345666666554
Q ss_pred HhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCch
Q psy14047 213 QELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTR 292 (350)
Q Consensus 213 ~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~ 292 (350)
..++++|++.+. ++..++|++ +++ ..++++++. +|+||+|||||++.
T Consensus 144 ------~~~~~~H~~~v~----------~~~~~~a~~-~~g-~~~~~~v~~--~~v~GvQFHPE~s~------------- 190 (211)
T 4gud_A 144 ------AYFYFVHSFAMP----------VGDYTIAQC-EYG-QPFSAAIQA--GNYYGVQFHPERSS------------- 190 (211)
T ss_dssp ------CCEEEEESEECC----------CCTTEEEEE-ESS-SEEEEEEEE--TTEEEESSCGGGSH-------------
T ss_pred ------cEEEEEeeEEeC----------CCCeEEEEe-cCC-CeEEEEEeC--CCEEEEEccCEecC-------------
Confidence 468999998763 456778886 444 445666664 48999999999762
Q ss_pred HHHHhHHHHHHHHHHHHHcC
Q psy14047 293 IAIENARYFFDWLVSQASGS 312 (350)
Q Consensus 293 ~~~~~~~~i~~~Fv~~~~~~ 312 (350)
+.+.+|+++|++.|.++
T Consensus 191 ---~~G~~ll~nFl~~~ge~ 207 (211)
T 4gud_A 191 ---KAGARLIQNFLELRGEN 207 (211)
T ss_dssp ---HHHHHHHHHHHHC----
T ss_pred ---ccHHHHHHHHHHHhccc
Confidence 34789999999998765
No 16
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.92 E-value=1e-24 Score=201.41 Aligned_cols=145 Identities=15% Similarity=0.192 Sum_probs=91.7
Q ss_pred HHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCc---------e-----------------eeeeeceeecCC
Q psy14047 145 KIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDC---------F-----------------YENLALEFMPSF 198 (350)
Q Consensus 145 ~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~---------~-----------------~~~~~i~~~~~~ 198 (350)
++++.+.+++ +||||||+|||+|+.++||++..+..... . ..+.++.++ .
T Consensus 87 ~~i~~~~~~~--~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~v~~~--~ 162 (273)
T 2w7t_A 87 AAAQVARMNN--IPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRIMDCDRNKMGANMHLGACDVYIV--E 162 (273)
T ss_dssp HHHHHHHHHT--CCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTTCSCEEEECCGGGBCSSCBCCEEEEEEEEEC--C
T ss_pred HHHHHHHHCC--CcEEEECcCHHHHHHHHhCccccccCCchhhcccccCCCceeeccccccccCCcccccceEEEEe--c
Confidence 4444444444 99999999999999999999742222110 0 001111110 0
Q ss_pred CCCcccccCCchhHHhhcccceEEE--eecceeecCCCccccc-cccceEEEEeecCC-C-ceEEEEEEcCCccE-EEEc
Q psy14047 199 RQSLLYSRAPIHVLQELATSHITHN--WHMWCITPSNFTDNGL-AKEWKVLSTNSNNR-G-LKFISSVEHKVYPF-AGIQ 272 (350)
Q Consensus 199 ~~~~lf~~~~~~~~~~~~~~~~v~~--~H~~~v~~~~~~~~~L-~~~~~vla~s~~~~-~-~e~v~ai~~~~~~i-~gvQ 272 (350)
.++.+++.+ +....+++ .|++.+.++... .| |++++++|++ +++ + ..++++|+++++|+ +|+|
T Consensus 163 ~~s~l~~~~--------~~~~~v~~~H~Hsy~v~~~~v~--~l~~~g~~v~A~s-~d~~~~g~~ieaie~~~~p~~~GvQ 231 (273)
T 2w7t_A 163 KSSIMAKIY--------SKSNIVVERHRHRYEVNTAYFE--DLRKAGLCISAVT-DPTFSSRCRVEAVENPSLRFFLAVQ 231 (273)
T ss_dssp TTSHHHHHT--------TTCSEEEEEEEECCEECGGGHH--HHHHTTCEEEEES-CTTCCTTCCEEEEECTTSSSEEEES
T ss_pred CCcHHHHHh--------CCCceEEeecccccccCHHHHH--hhccCCcEEEEEc-CCcCCCCCeEEEEEcCCCCeEEEEe
Confidence 122333222 22334555 567888643221 47 7899999997 441 0 12599999998885 5999
Q ss_pred ccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCCCCCC
Q psy14047 273 FHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFET 318 (350)
Q Consensus 273 fHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~~~~~ 318 (350)
||||++.... ....||++|+++|++..+.|.+
T Consensus 232 fHPE~~~~~~--------------~~~~l~~~Fv~~~~~~~~~~~~ 263 (273)
T 2w7t_A 232 FHPEFISTPM--------------DPAPTYLSFMAAAAKKDYVWPQ 263 (273)
T ss_dssp SCGGGSCBTT--------------BCCHHHHHHHHHHHTCCCCCCS
T ss_pred CCCCcCCCCC--------------chHHHHHHHHHHHHHHHHhhhh
Confidence 9999885421 1368999999999999888875
No 17
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=99.91 E-value=2.6e-24 Score=195.97 Aligned_cols=164 Identities=13% Similarity=0.081 Sum_probs=112.3
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE 112 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (350)
.++.+++++.|..+..+....... +..-++.+||||++||+.++..
T Consensus 18 ~~i~~~l~~~G~~v~v~~~~~~~~-~p~~~~~~d~lIl~GGp~~~~d--------------------------------- 63 (250)
T 3m3p_A 18 GHFGDFLAGEHIPFQVLRMDRSDP-LPAEIRDCSGLAMMGGPMSAND--------------------------------- 63 (250)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGTCC-CCSCGGGSSEEEECCCSSCTTS---------------------------------
T ss_pred HHHHHHHHHCCCeEEEEeccCCCc-CcCccccCCEEEECCCCCcccc---------------------------------
Confidence 677789999999988888643211 0112467888888888754320
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeec
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL 192 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i 192 (350)
+...+. .+.++++++.+.+ +||||||+|+|+|+.++||+|. ....+ +.++.++
T Consensus 64 -------------------~~~~~~----~~~~~i~~~~~~~--~PvlGIC~G~Qll~~~lGG~V~-~~~~~-e~G~~~v 116 (250)
T 3m3p_A 64 -------------------DLPWMP----TLLALIRDAVAQR--VPVIGHCLGGQLLAKAMGGEVT-DSPHA-EIGWVRA 116 (250)
T ss_dssp -------------------CCTTHH----HHHHHHHHHHHHT--CCEEEETHHHHHHHHHTTCCEE-EEEEE-EEEEEEE
T ss_pred -------------------cchHHH----HHHHHHHHHHHcC--CCEEEECHHHHHHHHHhCCEEE-eCCCC-ceeeEEE
Confidence 011121 1445566655556 9999999999999999999975 23222 2334555
Q ss_pred eeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEc
Q psy14047 193 EFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ 272 (350)
Q Consensus 193 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQ 272 (350)
..+.....+++| +++.. ..++++|++.+ .||++++++|+| +++ .+++++.++ ++||+|
T Consensus 117 ~~~~~~~~~~l~-g~~~~--------~~v~~~H~~~v--------~lp~~~~vlA~s-~~~---~~~a~~~~~-~~~GvQ 174 (250)
T 3m3p_A 117 WPQHVPQALEWL-GTWDE--------LELFEWHYQTF--------SIPPGAVHILRS-EHC---ANQAYVLDD-LHIGFQ 174 (250)
T ss_dssp EECSSHHHHHHH-SCSSC--------EEEEEEEEEEE--------CCCTTEEEEEEE-TTE---EEEEEEETT-TEEEES
T ss_pred EEecCCCCcccc-cCCCc--------cEEEEEcccee--------ecCCCCEEEEEe-CCC---CEEEEEECC-eeEEEE
Confidence 443222234577 55543 36999999998 589999999997 554 388999876 699999
Q ss_pred ccCCcCC
Q psy14047 273 FHPEKNA 279 (350)
Q Consensus 273 fHPE~~~ 279 (350)
||||++.
T Consensus 175 fHPE~~~ 181 (250)
T 3m3p_A 175 CHIEMQA 181 (250)
T ss_dssp SCTTCCH
T ss_pred eCCcCCH
Confidence 9999874
No 18
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=99.91 E-value=4.6e-24 Score=193.11 Aligned_cols=168 Identities=17% Similarity=0.160 Sum_probs=115.1
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE 112 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (350)
..+.+++++.|..+..++...... +..-++.+||||++||+.+.... .
T Consensus 15 g~~~~~l~~~g~~~~~~~~~~~~~-~p~~~~~~d~lii~GGp~~~~~~-~------------------------------ 62 (236)
T 3l7n_A 15 GAYLAWAALRGHDVSMTKVYRYEK-LPKDIDDFDMLILMGGPQSPSST-K------------------------------ 62 (236)
T ss_dssp HHHHHHHHHTTCEEEEEEGGGTCC-CCSCGGGCSEEEECCCSSCTTCC-T------------------------------
T ss_pred hHHHHHHHHCCCeEEEEeeeCCCC-CCCCccccCEEEECCCCCCcccc-c------------------------------
Confidence 567789999999998888743321 11125678999999998653200 0
Q ss_pred HHhccCCEEEeCCCCCCcccchHHH-HHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYA-KAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA 191 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~-~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~ 191 (350)
+...|. .. .+.++++++.+++ +||||||+|||+|+.++||++. ....+ +.+..+
T Consensus 63 -------------------~~~~~~~~~--~~~~~i~~~~~~~--~PvLGIClG~QlL~~~~Gg~v~-~~~~~-~~G~~~ 117 (236)
T 3l7n_A 63 -------------------KEFPYYDAQ--AEVKLIQKAAKSE--KIIVGVCLGAQLMGVAYGADYL-HSPKK-EIGNYL 117 (236)
T ss_dssp -------------------TTCTTCCHH--HHHHHHHHHHHTT--CEEEEETHHHHHHHHHTTCCCE-EEEEE-EEEEEE
T ss_pred -------------------ccCcccchH--HHHHHHHHHHHcC--CCEEEEchHHHHHHHHhCCEEe-cCCCc-eeeeEE
Confidence 001111 00 1346666666666 9999999999999999999874 22222 233456
Q ss_pred ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047 192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI 271 (350)
Q Consensus 192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv 271 (350)
+..+.....+++|..++..+ .++++|++.. .+|++++++|++ +++. +++++.++ ++||+
T Consensus 118 v~~~~~~~~~~l~~~~~~~~--------~v~~~H~~~~--------~lp~~~~vla~s-~~~~---~~a~~~~~-~v~gv 176 (236)
T 3l7n_A 118 ISLTEAGKMDSYLSDFSDDL--------LVGHWHGDMP--------GLPDKAQVLAIS-QGCP---RQIIKFGP-KQYAF 176 (236)
T ss_dssp EEECTTGGGCGGGTTSCSEE--------EEEEEEEEEC--------CCCTTCEEEEEC-SSCS---CSEEEEET-TEEEE
T ss_pred EEEccCcccChHHhcCCCCc--------EEEEecCCcc--------cCCChheEEEEC-CCCC---EEEEEECC-CEEEE
Confidence 65544333577888877643 5899999763 789999999997 5555 66887765 89999
Q ss_pred cccCCcC
Q psy14047 272 QFHPEKN 278 (350)
Q Consensus 272 QfHPE~~ 278 (350)
|||||++
T Consensus 177 QfHPE~~ 183 (236)
T 3l7n_A 177 QCHLEFT 183 (236)
T ss_dssp SSBSSCC
T ss_pred EeCCCCC
Confidence 9999975
No 19
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.90 E-value=7e-24 Score=185.49 Aligned_cols=182 Identities=16% Similarity=0.171 Sum_probs=118.0
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccc
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAK 85 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~ 85 (350)
||+|||++.+.. ..+|+++|+++|+.++.++... .++.+|||+||||.....
T Consensus 2 ~p~Igi~~~~~~--------------~~~~~~~l~~~G~~~~~~~~~~-------~l~~~dglil~GG~~~~~------- 53 (191)
T 2ywd_A 2 RGVVGVLALQGD--------------FREHKEALKRLGIEAKEVRKKE-------HLEGLKALIVPGGESTTI------- 53 (191)
T ss_dssp -CCEEEECSSSC--------------HHHHHHHHHTTTCCCEEECSGG-------GGTTCSEEEECSSCHHHH-------
T ss_pred CcEEEEEecCCc--------------hHHHHHHHHHCCCEEEEeCChh-------hhccCCEEEECCCChhhh-------
Confidence 899999987532 2578999999999999887532 256799999999952110
Q ss_pred cceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHH
Q psy14047 86 AGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLG 165 (350)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G 165 (350)
+.+... ..+.+.++++.++++ +||||||+|
T Consensus 54 ------------------------------------------------~~~~~~-~~~~~~i~~~~~~~~-~PilGiC~G 83 (191)
T 2ywd_A 54 ------------------------------------------------GKLARE-YGIEDEVRKRVEEGS-LALFGTCAG 83 (191)
T ss_dssp ------------------------------------------------HHHHHH-TTHHHHHHHHHHTTC-CEEEEETHH
T ss_pred ------------------------------------------------HHhhhh-hhHHHHHHHHHHCCC-CeEEEECHH
Confidence 011000 024456666665432 899999999
Q ss_pred HHHHHHHhcC-ccccCCccCceeeeeeceeecCCCC------CcccccCCchhHHhhcccceEEEeecceeecCCCcccc
Q psy14047 166 FQLLLYTSNN-ENELRTRCDCFYENLALEFMPSFRQ------SLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNG 238 (350)
Q Consensus 166 ~QlLa~a~Gg-~v~~~~~~~~~~~~~~i~~~~~~~~------~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~ 238 (350)
||+|+.++|| ++. ...+....... ....... +..+..+ ....++++|++.+. .
T Consensus 84 ~Q~l~~~~gg~~~~--~~lg~~~~~~~--~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~Hs~~v~-------~ 143 (191)
T 2ywd_A 84 AIWLAKEIVGYPEQ--PRLGVLEAWVE--RNAFGRQVESFEEDLEVEGL---------GSFHGVFIRAPVFR-------R 143 (191)
T ss_dssp HHHHEEEETTCTTC--CCCCCEEEEEE--TTCSCCSSSEEEEEEEETTT---------EEEEEEEESCCEEE-------E
T ss_pred HHHHHHHhCCCCCC--ccccccceEEE--cCCcCCccccccccccccCC---------CceeEEEEccccee-------c
Confidence 9999999998 531 21111111000 0000000 1112211 12357889999886 6
Q ss_pred ccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHH
Q psy14047 239 LAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQAS 310 (350)
Q Consensus 239 L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~ 310 (350)
+|++++++|++ + + ++++++++ +++|+|||||++. .. .++++|++.|+
T Consensus 144 l~~~~~~~a~~--~-~--~~~a~~~~--~~~gvQfHPE~~~-----------------~~-~l~~~f~~~~~ 190 (191)
T 2ywd_A 144 LGEGVEVLARL--G-D--LPVLVRQG--KVLASSFHPELTE-----------------DP-RLHRYFLELAG 190 (191)
T ss_dssp ECTTCEEEEEE--T-T--EEEEEEET--TEEEESSCGGGSS-----------------CC-HHHHHHHHHHT
T ss_pred cCCCcEEEEEE--C-C--EEEEEEEC--CEEEEEeCCCCCC-----------------Cc-HHHHHHHHHhc
Confidence 88999999995 3 3 58999986 4999999999653 12 79999999885
No 20
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.90 E-value=7.2e-24 Score=187.09 Aligned_cols=133 Identities=20% Similarity=0.253 Sum_probs=84.6
Q ss_pred HHHHHHHHhhCCCCccEEEehHHHHHHHHHhc--CccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccce
Q psy14047 143 IYKIAKEFNENRDYFPIMGICLGFQLLLYTSN--NENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHI 220 (350)
Q Consensus 143 l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~G--g~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~ 220 (350)
+.++++++.+++ +||||||+|||+|+.++| |+...+...+......+...+....++.++...+. ....
T Consensus 66 ~~~~i~~~~~~~--~PilGIC~G~Qll~~~~g~~G~~~~l~~~~g~v~~~~~~~~~~~g~~~l~~~~~~-------~~~~ 136 (201)
T 1gpw_B 66 LIDFVRKHVEDE--RYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSRRLPHMGWNEVIFKDTF-------PNGY 136 (201)
T ss_dssp CHHHHHHHHHTT--CEEEEETHHHHTTSSEETTEEEEECCCSSSEEEEECCCSSCSEEEEEEEEESSSS-------CCEE
T ss_pred HHHHHHHHHHcC--CeEEEEChhHHHHHHhhccCCCCCCcceeeeEEEEcCCCCCCcccceeeEeccCC-------CCCe
Confidence 456677776666 999999999999999987 44222322222211111000000112333322221 1236
Q ss_pred EEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHH
Q psy14047 221 THNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARY 300 (350)
Q Consensus 221 v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~ 300 (350)
++++|++++. .+ +++++|++ ++++. .++++++++ ++||+|||||++. ..+..
T Consensus 137 v~~~H~~~v~-------~~--~~~vla~s-~~~g~-~~~a~~~~~-~i~gvQfHPE~~~----------------~~~~~ 188 (201)
T 1gpw_B 137 YYFVHTYRAV-------CE--EEHVLGTT-EYDGE-IFPSAVRKG-RILGFQFHPEKSS----------------KIGRK 188 (201)
T ss_dssp EEEEESEEEE-------EC--GGGEEEEE-EETTE-EEEEEEEET-TEEEESSCGGGSH----------------HHHHH
T ss_pred EEEECcceec-------cC--CCEEEEEE-ccCCc-eEEEEEECC-CEEEEECCCcccC----------------HhHHH
Confidence 8999999996 44 68999997 44121 378888776 8999999999772 24789
Q ss_pred HHHHHHHHHHcC
Q psy14047 301 FFDWLVSQASGS 312 (350)
Q Consensus 301 i~~~Fv~~~~~~ 312 (350)
++++|++.|+.+
T Consensus 189 l~~~f~~~~~~~ 200 (201)
T 1gpw_B 189 LLEKVIECSLSR 200 (201)
T ss_dssp HHHHHHHHSSCC
T ss_pred HHHHHHHHhhcC
Confidence 999999988654
No 21
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.89 E-value=1.2e-23 Score=195.78 Aligned_cols=144 Identities=16% Similarity=0.213 Sum_probs=92.9
Q ss_pred HHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCc-----------------e----------eeeeeceee
Q psy14047 143 IYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDC-----------------F----------YENLALEFM 195 (350)
Q Consensus 143 l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~-----------------~----------~~~~~i~~~ 195 (350)
+.++++++.+++ +||||||+|||+|+.++||++..+..... + ....++...
T Consensus 108 ~~~~i~~~~~~~--~PilGIC~G~Q~l~~a~Gg~v~~~~~~~~~e~~~~~~~~~i~~~~~h~~~~~~~~~~~g~~~v~~~ 185 (289)
T 2v4u_A 108 KLQAISWARTKK--IPFLGVXLGMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVIDMPEHNPGNLGGTMRLGIRRTVFK 185 (289)
T ss_dssp HHHHHHHHHHTT--CCEEEETHHHHHHHHHHHHHHSCCTTEEESTTCTTCSEEEEEECCBCCTTCSSCBCEEEEEEEEES
T ss_pred HHHHHHHHHHcC--CcEEEECccHHHHHHHHhccccccccCcccccCccccccceecchhhcccccCCccccceEEEEEe
Confidence 456667766666 99999999999999999998732121110 0 001122111
Q ss_pred cCCCCCcccccCCchhHHhhcccceE--EEeecceeecCCCcccccc-ccceEEEEeecCCCceEEEEEEcCCccEE-EE
Q psy14047 196 PSFRQSLLYSRAPIHVLQELATSHIT--HNWHMWCITPSNFTDNGLA-KEWKVLSTNSNNRGLKFISSVEHKVYPFA-GI 271 (350)
Q Consensus 196 ~~~~~~~lf~~~~~~~~~~~~~~~~v--~~~H~~~v~~~~~~~~~L~-~~~~vla~s~~~~~~e~v~ai~~~~~~i~-gv 271 (350)
..++.+++.++. ...+ ++.|++.+.++.+. .|| ++++++|++ +++. ++++|+++++|++ |+
T Consensus 186 --~~~s~l~~~~~~--------~~~v~~~H~H~y~vn~~~v~--~l~~~g~~v~A~s-~dg~--~ieaie~~~~p~~lGv 250 (289)
T 2v4u_A 186 --TENSILRKLYGD--------VPFIEERHRHRFEVNPNLIK--QFEQNDLSFVGQD-VDGD--RMEIIELANHPYFVGV 250 (289)
T ss_dssp --CSCCHHHHHTTS--------CSEEEEEEEECEEECGGGSG--GGTTSSEEEEEEE-TTSC--SEEEEEESSSSCEEEE
T ss_pred --cCCCHHHHhcCC--------CceEEEecccccccCHHHHH--hcccCCeEEEEEc-CCCC--eEEEEEcCCCCeEEEE
Confidence 012333333222 1234 44456666654332 688 999999997 5553 3889999988865 99
Q ss_pred cccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCCCCC
Q psy14047 272 QFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHHSFE 317 (350)
Q Consensus 272 QfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~~~~ 317 (350)
|||||+...+. ..+.+|.+|+++|+++.+.|.
T Consensus 251 QfHPE~~~~~~--------------~~~~lf~~Fv~~~~~~~~~~~ 282 (289)
T 2v4u_A 251 QFHPEFSSRPM--------------KPSPPYLGLLLAATGNLNAYL 282 (289)
T ss_dssp SSBGGGGCBTT--------------BCCHHHHHHHHHHHTCHHHHH
T ss_pred ECCCCCCCCCC--------------chHHHHHHHHHHHHhhhhhhh
Confidence 99999875321 135899999999998877654
No 22
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.89 E-value=7.4e-23 Score=181.93 Aligned_cols=205 Identities=17% Similarity=0.092 Sum_probs=128.5
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccc
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAK 85 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~ 85 (350)
.+.|+|+..... ....+++++|+++|+.+..++..+ .++.+|||++|||. +.... .
T Consensus 2 ~~~i~il~~~~~------------~~~~~~~~~l~~~g~~~~~~~~~~-------~~~~~d~lil~Gg~-~~~~~-~--- 57 (213)
T 3d54_D 2 KPRACVVVYPGS------------NCDRDAYHALEINGFEPSYVGLDD-------KLDDYELIILPGGF-SYGDY-L--- 57 (213)
T ss_dssp CCEEEEECCTTE------------EEHHHHHHHHHTTTCEEEEECTTC-------CCSSCSEEEECEEC-GGGGC-S---
T ss_pred CcEEEEEEcCCC------------CccHHHHHHHHHCCCEEEEEecCC-------CcccCCEEEECCCC-chhhh-h---
Confidence 367899875532 111356899999999999998652 25789999999997 32100 0
Q ss_pred cceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHH
Q psy14047 86 AGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLG 165 (350)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G 165 (350)
.+. .+... ..+.++++++.+++ +||||||+|
T Consensus 58 ------------~~~----------------------------------~~~~~-~~~~~~l~~~~~~~--~pilgIC~G 88 (213)
T 3d54_D 58 ------------RPG----------------------------------AVAAR-EKIAFEIAKAAERG--KLIMGICNG 88 (213)
T ss_dssp ------------STT----------------------------------HHHHT-STTHHHHHHHHHHT--CEEEECHHH
T ss_pred ------------ccc----------------------------------ccccc-HHHHHHHHHHHHCC--CEEEEECHH
Confidence 000 00000 01445566666666 999999999
Q ss_pred HHHHHHH--hcCccccCCc-cCceeeeeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccc-cc
Q psy14047 166 FQLLLYT--SNNENELRTR-CDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGL-AK 241 (350)
Q Consensus 166 ~QlLa~a--~Gg~v~~~~~-~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L-~~ 241 (350)
+|+|+.+ ++|++. ... ...+....++.... ..+++++.++... ...++.+|+++.. .+ ++
T Consensus 89 ~qlLa~aGll~g~v~-~~~~~~~~~g~~~v~~~~--~~~~l~~~~~~~~------~~~~~~~H~~~s~-------~~~~~ 152 (213)
T 3d54_D 89 FQILIEMGLLKGALL-QNSSGKFICKWVDLIVEN--NDTPFTNAFEKGE------KIRIPIAHGFGRY-------VKIDD 152 (213)
T ss_dssp HHHHHHHTSSCSEEE-CCSSSSCBCCEEEEEECC--CSSTTSTTSCTTC------EEEEECCBSSCEE-------ECSSC
T ss_pred HHHHHHcCCCCCCee-cCCCCceEeeeEEEEeCC--CCCceeeccCCCC------EEEEEeecCceEE-------EecCC
Confidence 9999999 888764 222 11233334444321 3567887765411 1134458854211 22 46
Q ss_pred cceEEEEeecC--CCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHH
Q psy14047 242 EWKVLSTNSNN--RGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQAS 310 (350)
Q Consensus 242 ~~~vla~s~~~--~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~ 310 (350)
+++++|++ ++ +....++++++++.++||+|||||++...|... ..+..+|++|++.|+
T Consensus 153 ~~~~~a~~-~~~ng~~~~i~a~~~~~~~~~gvQfHPE~~~~~~~~~----------~~g~~l~~~f~~~~~ 212 (213)
T 3d54_D 153 VNVVLRYV-KDVNGSDERIAGVLNESGNVFGLMPHPERAVEELIGG----------EDGKKVFQSILNYLK 212 (213)
T ss_dssp CEEEEEES-SCSSCCGGGEEEEECSSSCEEEECSCSTTTTSTTTTC----------STTSHHHHHHHHHCC
T ss_pred CcEEEEEc-CCCCCCccceeEEEcCCCCEEEEeCCHHHhcCHhhhc----------CccHHHHHHHHHHhh
Confidence 78999986 43 210238899887778999999999987554321 236789999999875
No 23
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.89 E-value=1.7e-23 Score=215.09 Aligned_cols=174 Identities=18% Similarity=0.266 Sum_probs=123.7
Q ss_pred HHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHHH
Q psy14047 34 SYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEK 113 (350)
Q Consensus 34 ~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (350)
...+.|+++|+.+.++|++.+.+++.. ..+||||||||+.++....
T Consensus 44 liar~lre~Gv~~~ivp~~~~~e~i~~--~~~dGIILsGGp~s~~~~~-------------------------------- 89 (697)
T 2vxo_A 44 VIDRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPNSVYAED-------------------------------- 89 (697)
T ss_dssp HHHHHHHHTTCCEEEEETTCCHHHHHH--HTCSEEEEEECC---------------------------------------
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHhh--cCCCEEEECCCCCcccCcc--------------------------------
Confidence 356899999999999999887776654 6799999999996543000
Q ss_pred HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeece
Q psy14047 114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALE 193 (350)
Q Consensus 114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~ 193 (350)
.+. .. + +..+.| +||||||+|||+|+.++||++. ....... +..++.
T Consensus 90 --------------~~~--~~----------~---~i~~~g--~PvLGIC~G~QlLa~~lGG~v~-~~~~~e~-G~~~v~ 136 (697)
T 2vxo_A 90 --------------APW--FD----------P---AIFTIG--KPVLGICYGMQMMNKVFGGTVH-KKSVRED-GVFNIS 136 (697)
T ss_dssp --------------CCC--CC----------G---GGTTSS--CCEEEEEHHHHHHHHHTTCCBC-C--------CEEEE
T ss_pred --------------chh--HH----------H---HHHhCC--CCEEEECHHHHHHHHHhCCeEe-ecCCCcc-ceEEEE
Confidence 000 00 0 112344 9999999999999999999975 2222222 234444
Q ss_pred eecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcc
Q psy14047 194 FMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQF 273 (350)
Q Consensus 194 ~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQf 273 (350)
+. ..+.||++++.. ..++++|++++. .+|++++++|++ ++ .++++++++.++||+||
T Consensus 137 ~~---~~~~Lf~~l~~~--------~~v~~~H~~~V~-------~lp~g~~vlA~s--~~---~i~ai~~~~~~i~GvQF 193 (697)
T 2vxo_A 137 VD---NTCSLFRGLQKE--------EVVLLTHGDSVD-------KVADGFKVVARS--GN---IVAGIANESKKLYGAQF 193 (697)
T ss_dssp EC---TTSGGGTTCCSE--------EEECCCSSCCBS-------SCCTTCEEEEEE--TT---EEEEEEETTTTEEEESS
T ss_pred ec---CCChhhhcCCcc--------Ccceeeccccee-------cCCCCeEEEEEe--CC---ceEEEEeCCCCEEEEEe
Confidence 32 356788887653 368999999997 799999999996 33 59999998889999999
Q ss_pred cCCcCCccccccCCCCCchHHHHhHHHHHHHHH-HHHHcC
Q psy14047 274 HPEKNAYEWKLTQDNPHTRIAIENARYFFDWLV-SQASGS 312 (350)
Q Consensus 274 HPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv-~~~~~~ 312 (350)
|||++..+ .+..++++|+ +.|...
T Consensus 194 HPE~~~t~---------------~g~~ll~nFl~~i~~~~ 218 (697)
T 2vxo_A 194 HPEVGLTE---------------NGKVILKNFLYDIAGCS 218 (697)
T ss_dssp CTTSSSST---------------THHHHHHHHHTTTTCCC
T ss_pred cccCCCCc---------------cchhhhhhhhhcccccc
Confidence 99987532 3788999999 777654
No 24
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=99.89 E-value=6e-23 Score=209.32 Aligned_cols=181 Identities=12% Similarity=0.086 Sum_probs=123.6
Q ss_pred hhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhh
Q psy14047 31 IPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLK 110 (350)
Q Consensus 31 i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (350)
....++++++++|+.+.+++++.+.+ +..+|||||+||+.+.. +
T Consensus 458 f~~~l~~~l~~~G~~v~Vv~~d~~~~-----~~~~DgIIlsGGPg~p~--d----------------------------- 501 (645)
T 3r75_A 458 FTAMIAQQLSSLGLATEVCGVHDAVD-----LARYDVVVMGPGPGDPS--D----------------------------- 501 (645)
T ss_dssp HHHHHHHHHHHTTCEEEEEETTCCCC-----GGGCSEEEECCCSSCTT--C-----------------------------
T ss_pred HHHHHHHHHHHCCCEEEEEECCCccc-----ccCCCEEEECCCCCChh--h-----------------------------
Confidence 34678899999999999999876532 46789999999986543 1
Q ss_pred HHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeee
Q psy14047 111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENL 190 (350)
Q Consensus 111 ~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~ 190 (350)
+...+.. .+.++++++.+.+ +||||||+|||+|+.++||++. ....+.++...
T Consensus 502 ---------------------~~~p~i~---~~~~lI~~a~~~~--iPiLGIClG~QlLa~alGG~V~-~~~~~~~G~~~ 554 (645)
T 3r75_A 502 ---------------------AGDPRIA---RLYAWLRHLIDEG--KPFMAVCLSHQILNAILGIPLV-RREVPNQGIQV 554 (645)
T ss_dssp ---------------------TTSHHHH---HHHHHHHHHHHHT--CCEEEETHHHHHHHHHTTCCEE-EEEEEEEEEEE
T ss_pred ---------------------hhhhhHH---HHHHHHHHHHHCC--CCEEEECHHHHHHHHHhCCEEE-cCCCcccccce
Confidence 0112222 1344455544445 9999999999999999999975 33334444444
Q ss_pred eceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047 191 ALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG 270 (350)
Q Consensus 191 ~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g 270 (350)
++.. .++.++...+..+ .++.+|++.+. .+|++++++|++ +++. ++++++++ +||
T Consensus 555 ~i~~----~~~~l~~~~~~~~--------~v~~~h~~~~~-------~lp~g~~v~A~s-~dg~---i~Ai~~~~--~~G 609 (645)
T 3r75_A 555 EIDL----FGQRERVGFYNTY--------VAQTVRDEMDV-------DGVGTVAISRDP-RTGE---VHALRGPT--FSS 609 (645)
T ss_dssp EEEE----TTEEEEEEEEEEE--------EEBCSCSEEEE-------TTTEEEEEEECT-TTCB---EEEEEETT--EEE
T ss_pred EEee----ecCcceecCCCcE--------EEEEehhhccc-------cCCCCeEEEEEc-CCCc---EEEEEcCC--EEE
Confidence 4432 1334444433322 34445555443 589999999996 5554 99999875 799
Q ss_pred EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcCCC
Q psy14047 271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGSHH 314 (350)
Q Consensus 271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~~ 314 (350)
+|||||+..++ .+..|+++|++.+++...
T Consensus 610 VQFHPE~~~t~---------------~G~~Ll~nFl~~~~~~~~ 638 (645)
T 3r75_A 610 MQFHAESVLTV---------------DGPRILGEAITHAIRREK 638 (645)
T ss_dssp ESSBTTSTTCT---------------THHHHHHHHHHHHTTTTC
T ss_pred EEeCCeecCCc---------------chHHHHHHHHHHHHhccc
Confidence 99999987542 378999999999976543
No 25
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.89 E-value=5.6e-23 Score=184.85 Aligned_cols=197 Identities=21% Similarity=0.251 Sum_probs=121.7
Q ss_pred CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHc---CCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCC
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEAS---GARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADD 81 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~---G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~ 81 (350)
.+++|||++.... ..+|+++|+++ |+.+++++. .+ .++.+||||||||..++.
T Consensus 2 ~~~~I~Il~~~~~--------------~~~~~~~l~~~~~~G~~~~~~~~---~~----~l~~~dglil~GG~~~~~--- 57 (227)
T 2abw_A 2 SEITIGVLSLQGD--------------FEPHINHFIKLQIPSLNIIQVRN---VH----DLGLCDGLVIPGGESTTV--- 57 (227)
T ss_dssp CCEEEEEECTTSC--------------CHHHHHHHHTTCCTTEEEEEECS---HH----HHHTCSEEEECCSCHHHH---
T ss_pred CCcEEEEEeCCCC--------------cHHHHHHHHHhccCCeEEEEEcC---cc----ccccCCEEEECCCcHHHH---
Confidence 5789999986532 15789999999 999888874 22 256799999999974332
Q ss_pred cccccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhC-CCCccEE
Q psy14047 82 GYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNEN-RDYFPIM 160 (350)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~-g~~~PIl 160 (350)
..+. .++. . .+.+.++++.++ | +|||
T Consensus 58 ------------------~~~~-----------------------------~~d~--~--~~~~~i~~~~~~~g--~Pil 84 (227)
T 2abw_A 58 ------------------RRCC-----------------------------AYEN--D--TLYNALVHFIHVLK--KPIW 84 (227)
T ss_dssp ------------------HHHT-----------------------------THHH--H--HHHHHHHHHHHTSC--CCEE
T ss_pred ------------------HHHH-----------------------------HHhH--H--HHHHHHHHHHHhcC--CEEE
Confidence 0000 0000 1 256777888777 7 9999
Q ss_pred EehHHHHHHHHHhcCccccCCc---cCceeeeeeceeecCC--C------CCcccccCCchhHHhhcccceEEEeeccee
Q psy14047 161 GICLGFQLLLYTSNNENELRTR---CDCFYENLALEFMPSF--R------QSLLYSRAPIHVLQELATSHITHNWHMWCI 229 (350)
Q Consensus 161 GIC~G~QlLa~a~Gg~v~~~~~---~~~~~~~~~i~~~~~~--~------~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v 229 (350)
|||+|||+|+.++||.+. ... ...-+ ..++...... . ....+..+.. ..+.....++.|++.+
T Consensus 85 GIC~G~QlL~~~~gg~~~-~~~~~~~~~lG-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~g~~~~~~~~h~~~v 158 (227)
T 2abw_A 85 GTCAGCILLSKNVENIKL-YSNFGNKFSFG-GLDITICRNFYGSQNDSFICSLNIISDSS----AFKKDLTAACIRAPYI 158 (227)
T ss_dssp EETHHHHHTEEEEECCCS-CCTTGGGSCCC-CEEEEEECCC----CCEEEEECEECCCCT----TCCTTCEEEEESCCEE
T ss_pred EECHHHHHHHHHhcCCcc-ccccccccccC-ceeEEEEecCCCccccccccccccccccc----cCCCceeEEEEEcceE
Confidence 999999999999999742 110 11111 1111111000 0 0001111100 0011234577888888
Q ss_pred ecCCCccccc-cccceEEEEeecCC--CceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHH
Q psy14047 230 TPSNFTDNGL-AKEWKVLSTNSNNR--GLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLV 306 (350)
Q Consensus 230 ~~~~~~~~~L-~~~~~vla~s~~~~--~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv 306 (350)
. .+ |++++++|++ +.+ +...+++++.. +++|+|||||++. ...++++|+
T Consensus 159 ~-------~~~~~~~~vla~~-~~~~~g~~~~~a~~~~--~v~gvQfHPE~~~------------------~~~l~~~Fl 210 (227)
T 2abw_A 159 R-------EILSDEVKVLATF-SHESYGPNIIAAVEQN--NCLGTVFHPELLP------------------HTAFQQYFY 210 (227)
T ss_dssp E-------EECCTTCEEEEEE-EETTTEEEEEEEEEET--TEEEESSCGGGSS------------------CCHHHHHHH
T ss_pred e-------ecCCCCcEEEEEc-ccccCCCCceEEEEEC--CEEEEEECCeeCC------------------CcHHHHHHH
Confidence 6 66 8999999996 310 12257888864 6999999999763 137899999
Q ss_pred HHHHcC
Q psy14047 307 SQASGS 312 (350)
Q Consensus 307 ~~~~~~ 312 (350)
+.|++.
T Consensus 211 ~~~~~~ 216 (227)
T 2abw_A 211 EKVKNY 216 (227)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998643
No 26
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.88 E-value=5.5e-23 Score=183.96 Aligned_cols=189 Identities=20% Similarity=0.255 Sum_probs=120.2
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcc
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGY 83 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~ 83 (350)
+.++.|+|+.... .| .+++++|+++|+.++.++..+ .++.+|||+||||+....
T Consensus 21 ~~~~~I~il~~~~------------~~--~~~~~~l~~~G~~~~~~~~~~-------~l~~~Dglil~GG~~~~~----- 74 (219)
T 1q7r_A 21 QSNMKIGVLGLQG------------AV--REHVRAIEACGAEAVIVKKSE-------QLEGLDGLVLPGGESTTM----- 74 (219)
T ss_dssp CCCCEEEEESCGG------------GC--HHHHHHHHHTTCEEEEECSGG-------GGTTCSEEEECCCCHHHH-----
T ss_pred CCCCEEEEEeCCC------------Cc--HHHHHHHHHCCCEEEEECCHH-------HHhhCCEEEECCCChHHH-----
Confidence 4568899996422 12 346799999999999888521 257899999999973221
Q ss_pred cccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEeh
Q psy14047 84 AKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGIC 163 (350)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC 163 (350)
+.+.+. ..+.++++++.+++ +||||||
T Consensus 75 --------------------------------------------------~~~~~~-~~~~~~i~~~~~~~--~PilGIC 101 (219)
T 1q7r_A 75 --------------------------------------------------RRLIDR-YGLMEPLKQFAAAG--KPMFGTC 101 (219)
T ss_dssp --------------------------------------------------HHHHHH-TTCHHHHHHHHHTT--CCEEEET
T ss_pred --------------------------------------------------HHHhhh-hHHHHHHHHHHHcC--CeEEEEC
Confidence 011100 01346667776776 9999999
Q ss_pred HHHHHHHHHhcCccc-cCCccCceeeeeeceeecCC-CCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccc
Q psy14047 164 LGFQLLLYTSNNENE-LRTRCDCFYENLALEFMPSF-RQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAK 241 (350)
Q Consensus 164 ~G~QlLa~a~Gg~v~-~~~~~~~~~~~~~i~~~~~~-~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~ 241 (350)
+|||+|+.++||++. .++..+......+....... ..+..+.++ +....++++|++.+. .+|+
T Consensus 102 ~G~QlL~~~~gg~~~~~lg~~~~~~~~~~~g~~~~~~~~~~~~~g~--------g~~~~~~~~h~~~v~-------~l~~ 166 (219)
T 1q7r_A 102 AGLILLAKRIVGYDEPHLGLMDITVERNSFGRQRESFEAELSIKGV--------GDGFVGVFIRAPHIV-------EAGD 166 (219)
T ss_dssp THHHHHEEEEESSCCCCCCCEEEEEECHHHHCCCCCEEEEEEETTT--------EEEEEEEESSCCEEE-------EECT
T ss_pred HHHHHHHHHhCCCCcCCcCccceEEEecCCCccccceecCcccCCC--------CCceEEEEEecceee-------ccCC
Confidence 999999999999752 11111111100000000000 001112222 122357888999887 7899
Q ss_pred cceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047 242 EWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG 311 (350)
Q Consensus 242 ~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~ 311 (350)
+++++|++ ++ .+++++.+ +++|+|||||.+. ...++++|++.|++
T Consensus 167 ~~~v~a~s--dg---~~ea~~~~--~i~GvQfHPE~~~------------------~~~l~~~fl~~~~~ 211 (219)
T 1q7r_A 167 GVDVLATY--ND---RIVAARQG--QFLGCSFHPELTD------------------DHRLMQYFLNMVKE 211 (219)
T ss_dssp TCEEEEEE--TT---EEEEEEET--TEEEESSCGGGSS------------------CCHHHHHHHHHHHH
T ss_pred CcEEEEEc--CC---EEEEEEEC--CEEEEEECcccCC------------------CHHHHHHHHHHHHH
Confidence 99999995 33 48899884 7999999999752 13789999999875
No 27
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.87 E-value=1.1e-21 Score=195.38 Aligned_cols=150 Identities=21% Similarity=0.268 Sum_probs=87.9
Q ss_pred HHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCc----eeeeeec-eeecC----C-CCCccc------ccCC
Q psy14047 145 KIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDC----FYENLAL-EFMPS----F-RQSLLY------SRAP 208 (350)
Q Consensus 145 ~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~----~~~~~~i-~~~~~----~-~~~~lf------~~~~ 208 (350)
+.++.+.+++ +|+||||+|||+|+.++||++..+..... .+...|+ ..... . .+..++ ...+
T Consensus 375 ~~ir~a~e~~--iPiLGICLGmQlL~~a~Gg~v~~l~~~~s~E~~~~~~hpvi~~~~~q~~i~~~ggtmrlG~~~v~i~~ 452 (550)
T 1vco_A 375 RAAQYARERK--IPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKP 452 (550)
T ss_dssp HHHHHHHHTT--CCEEEETHHHHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEEEECT
T ss_pred HHHHHHHHCC--CcEEEECcCHHHHHHHhCcccccCCccccccccCCCCCCeEEeccccccccccCCcccccceEEEEcc
Confidence 3444444444 99999999999999999998753332210 0001111 11000 0 011110 0013
Q ss_pred chhHHhhcccce--EEEeecceeecCCCcccccc-ccceEEEEeecCCC---ceEEEEEEcCCccEE-EEcccCCcCCcc
Q psy14047 209 IHVLQELATSHI--THNWHMWCITPSNFTDNGLA-KEWKVLSTNSNNRG---LKFISSVEHKVYPFA-GIQFHPEKNAYE 281 (350)
Q Consensus 209 ~~~~~~~~~~~~--v~~~H~~~v~~~~~~~~~L~-~~~~vla~s~~~~~---~e~v~ai~~~~~~i~-gvQfHPE~~~~~ 281 (350)
.++...+..... ..+.|.|.|... ....++ ++++++|++ .++. ..++++++++++|+| |+|||||+...+
T Consensus 453 ~s~l~~iy~~~~v~e~h~H~Y~Vns~--~~~~l~~~gl~v~a~s-~dG~g~~~~~VeaIe~~~~p~fvGVQFHPE~~~~p 529 (550)
T 1vco_A 453 GTLLHRLYGKEEVLERHRHRYEVNPL--YVDGLERAGLVVSATT-PGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRP 529 (550)
T ss_dssp TSHHHHHHCCSEEEEEEEESEEECHH--HHHHHHHHTEEEEEEC-CCBTTBSTTCEEEEEETTSSSEEEESSCGGGGCBT
T ss_pred CchhhHhcCCceeeeeccceEEEchH--HhhccccCCeEEEEEe-CCCCccCCCcEEEEEeCCCCEEEEEEeCCccCCCC
Confidence 333333332333 356677766422 111455 789999997 5420 125999999999988 999999987542
Q ss_pred ccccCCCCCchHHHHhHHHHHHHHHHHHHcCC
Q psy14047 282 WKLTQDNPHTRIAIENARYFFDWLVSQASGSH 313 (350)
Q Consensus 282 ~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~~ 313 (350)
. .+..+|+.|+++|++..
T Consensus 530 ~--------------~g~~LF~~Fv~aa~~~~ 547 (550)
T 1vco_A 530 M--------------RPSPPFVGFVEAALAYQ 547 (550)
T ss_dssp T--------------BCCHHHHHHHHHHHHHT
T ss_pred C--------------ChHHHHHHHHHHHHhhc
Confidence 1 25689999999997654
No 28
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.86 E-value=1.5e-21 Score=171.41 Aligned_cols=174 Identities=20% Similarity=0.257 Sum_probs=108.9
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE 112 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (350)
.+++++|+++|+.++.++..+ .++.+|||++|||+.+..
T Consensus 14 ~~~~~~l~~~g~~~~~~~~~~-------~l~~~d~iil~GG~~~~~---------------------------------- 52 (196)
T 2nv0_A 14 REHIHAIEACGAAGLVVKRPE-------QLNEVDGLILPGGESTTM---------------------------------- 52 (196)
T ss_dssp HHHHHHHHHTTCEEEEECSGG-------GGGGCSEEEECCSCHHHH----------------------------------
T ss_pred HHHHHHHHHCCCEEEEeCChH-------HHhhCCEEEECCCChhhH----------------------------------
Confidence 456789999999988886521 156789999999973321
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccc-cCCccCceeeeee
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENE-LRTRCDCFYENLA 191 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~-~~~~~~~~~~~~~ 191 (350)
+.+.+. ..+.++++++.++| +||||||+|+|+|+.++||++. .++..+......+
T Consensus 53 ---------------------~~~~~~-~~~~~~i~~~~~~~--~pilgIC~G~q~l~~~~gg~~~~~lg~~~~~~~~~~ 108 (196)
T 2nv0_A 53 ---------------------RRLIDT-YQFMEPLREFAAQG--KPMFGTCAGLIILAKEIAGSDNPHLGLLNVVVERNS 108 (196)
T ss_dssp ---------------------HHHHHH-TTCHHHHHHHHHTT--CCEEEETHHHHHHSBCCC----CCCCCSCEEEECCC
T ss_pred ---------------------HHHhhh-HHHHHHHHHHHHCC--CcEEEECHHHHHHHHHhcCCCCCcccCCceeEeccC
Confidence 011100 01346667776676 9999999999999999999742 1121111111000
Q ss_pred ceeecC-CCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEE
Q psy14047 192 LEFMPS-FRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG 270 (350)
Q Consensus 192 i~~~~~-~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~g 270 (350)
...... ...+.++.++ +....++++|++.+. .+|++++++|++ ++ .+++++.+ +++|
T Consensus 109 ~g~~~~~~~~~~~~~~~--------g~~~~~~~~h~~~v~-------~~~~~~~v~a~~--d~---~~~a~~~~--~~~g 166 (196)
T 2nv0_A 109 FGRQVDSFEADLTIKGL--------DEPFTGVFIRAPHIL-------EAGENVEVLSEH--NG---RIVAAKQG--QFLG 166 (196)
T ss_dssp SCTTTSEEEEEECCTTC--------SSCEEEEEESCCEEE-------EECTTCEEEEEE--TT---EEEEEEET--TEEE
T ss_pred CCcccccccCCcccccC--------CCceEEEEEecceec-------ccCCCcEEEEEE--CC---EEEEEEEC--CEEE
Confidence 000000 0001122222 223457889999986 688999999995 33 47888874 7999
Q ss_pred EcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047 271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG 311 (350)
Q Consensus 271 vQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~ 311 (350)
+|||||.+. ...++++|++.|++
T Consensus 167 vQfHPE~~~------------------~~~l~~~fl~~~~~ 189 (196)
T 2nv0_A 167 CSFHPELTE------------------DHRVTQLFVEMVEE 189 (196)
T ss_dssp ESSCTTSSS------------------CCHHHHHHHHHHHH
T ss_pred EEECCccCC------------------chHHHHHHHHHHHh
Confidence 999999753 13789999999875
No 29
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.85 E-value=1.6e-21 Score=193.96 Aligned_cols=147 Identities=17% Similarity=0.233 Sum_probs=86.2
Q ss_pred HHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCc----eeeeeec-eee----------cCC-----CCCcc-
Q psy14047 145 KIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDC----FYENLAL-EFM----------PSF-----RQSLL- 203 (350)
Q Consensus 145 ~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~----~~~~~~i-~~~----------~~~-----~~~~l- 203 (350)
+.++.+.+++ +|+||||+|||+|+.++||++..+..... .+...|+ .+. ... .+..+
T Consensus 363 ~~i~~a~~~~--~PiLGIClG~Qll~va~Gg~v~~l~~a~s~E~~~~~~hpvi~l~~~w~~~~g~~~~q~~~~~~ggtmr 440 (545)
T 1s1m_A 363 TTARFARENN--IPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMR 440 (545)
T ss_dssp HHHHHHHHTT--CCEEEETHHHHHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCCCTTSCCC----------CCE
T ss_pred HHHHHHHHCC--CcEEEECChHHHHHHHhCCceecCCCCcccccCCCCCCceEEeecccccccccccccccccccCcccc
Confidence 4445544455 99999999999999999998753322110 0111121 110 000 00000
Q ss_pred ---c--ccCCchhHHhhcccce--EEEeecceeecCCCccccc-cccceEEEEeecCCCceEEEEEEcCCccEE-EEccc
Q psy14047 204 ---Y--SRAPIHVLQELATSHI--THNWHMWCITPSNFTDNGL-AKEWKVLSTNSNNRGLKFISSVEHKVYPFA-GIQFH 274 (350)
Q Consensus 204 ---f--~~~~~~~~~~~~~~~~--v~~~H~~~v~~~~~~~~~L-~~~~~vla~s~~~~~~e~v~ai~~~~~~i~-gvQfH 274 (350)
+ .-.+.++...+..... ..+.|.+.|..... ..+ +++++++|+| .++. .+++++++++|+| |+|||
T Consensus 441 lG~~~v~l~~~s~l~~iyg~~~v~e~h~Hry~VNs~~~--~~l~~~gl~v~a~s-~dg~--~VEaie~~~~p~flGVQFH 515 (545)
T 1s1m_A 441 LGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLL--KQIEDAGLRVAGRS-GDDQ--LVEIIEVPNHPWFVACQFH 515 (545)
T ss_dssp EEEEEEEECTTCHHHHHTTSSEEEEEEEECCEECHHHH--HHHHHTTCEEEEEC-SSSC--CEEEEECTTSSSEEEESSC
T ss_pred ccceeeEeccCCHHHHhcCCceEEEecCcceEEChHHh--hhcccCCeEEEEEC-CCCC--ceEEEEeCCCCEEEEEeCC
Confidence 0 0012223222322233 35566666642211 145 4899999997 6653 4899999999977 99999
Q ss_pred CCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHcC
Q psy14047 275 PEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASGS 312 (350)
Q Consensus 275 PE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~~ 312 (350)
||+...+. .++.||+.|+++|++.
T Consensus 516 PE~~~~p~--------------~g~~LF~~Fv~aa~~~ 539 (545)
T 1s1m_A 516 PEFTSTPR--------------DGHPLFAGFVKAASEF 539 (545)
T ss_dssp GGGTCCTT--------------TCCHHHHHHHHHHHHH
T ss_pred CCCCCCCC--------------ChHHHHHHHHHHHHHH
Confidence 99875432 2568999999999753
No 30
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.85 E-value=3.6e-21 Score=170.80 Aligned_cols=182 Identities=17% Similarity=0.170 Sum_probs=112.4
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcc
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGY 83 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~ 83 (350)
..+..|+|+.... -..+++++|+++|+.++.++..+ . ++.+|||+||||....
T Consensus 18 ~~~~~I~ii~~~~--------------~~~~~~~~l~~~g~~~~~~~~~~---~----l~~~d~iil~GG~~~~------ 70 (208)
T 2iss_D 18 GSHMKIGVLGVQG--------------DVREHVEALHKLGVETLIVKLPE---Q----LDMVDGLILPGGESTT------ 70 (208)
T ss_dssp --CCEEEEECSSS--------------CHHHHHHHHHHTTCEEEEECSGG---G----GGGCSEEEECSSCHHH------
T ss_pred CCCcEEEEEECCC--------------chHHHHHHHHHCCCEEEEeCChH---H----HhhCCEEEECCCcHHH------
Confidence 3456799984311 12557889999999988886432 1 5679999999985222
Q ss_pred cccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEeh
Q psy14047 84 AKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGIC 163 (350)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC 163 (350)
+.++. +.. .+.++++++.++| +||||||
T Consensus 71 ---------------~~~~~--------------------------------~~~---~~~~~i~~~~~~g--~PilGIC 98 (208)
T 2iss_D 71 ---------------MIRIL--------------------------------KEM---DMDEKLVERINNG--LPVFATC 98 (208)
T ss_dssp ---------------HHHHH--------------------------------HHT---TCHHHHHHHHHTT--CCEEEET
T ss_pred ---------------HHhhh--------------------------------hhh---hHHHHHHHHHHCC--CeEEEEC
Confidence 11110 000 1345667766666 9999999
Q ss_pred HHHHHHHHHhcCccccCCccCceeeeeeceeecCC--C------CCcccccCCchhHHhhcccceEEEeecceeecCCCc
Q psy14047 164 LGFQLLLYTSNNENELRTRCDCFYENLALEFMPSF--R------QSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFT 235 (350)
Q Consensus 164 ~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~--~------~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~ 235 (350)
+|||+|+.++||+. ....+. .+....... . .+..+.+++. ++..++++|++.+.
T Consensus 99 ~G~QlL~~~~gg~~--~~~lg~----~~~~v~~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~h~~~v~----- 160 (208)
T 2iss_D 99 AGVILLAKRIKNYS--QEKLGV----LDITVERNAYGRQVESFETFVEIPAVGK-------DPFRAIFIRAPRIV----- 160 (208)
T ss_dssp HHHHHHEEEEC-----CCCCCC----EEEEEETTTTCSGGGCEEEEECCGGGCS-------SCEEEEESSCCEEE-----
T ss_pred HHHHHHHHHcCCCC--CCCccc----cceEEEecCCCcccccccCCcccccCCC-------CceEEEEEeCcccc-----
Confidence 99999999999853 111111 111111100 0 0111222210 23468889999886
Q ss_pred cccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHH
Q psy14047 236 DNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQA 309 (350)
Q Consensus 236 ~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~ 309 (350)
.+|++++++|++ + + .+++++.. +++|+|||||.+.. ..++++|++.|
T Consensus 161 --~~~~~~~v~a~~--d-~--~~~a~~~~--~i~GvQfHPE~~~~------------------~~l~~~fl~~~ 207 (208)
T 2iss_D 161 --ETGKNVEILATY--D-Y--DPVLVKEG--NILACTFHPELTDD------------------LRLHRYFLEMV 207 (208)
T ss_dssp --EECSSCEEEEEE--T-T--EEEEEEET--TEEEESSCGGGSSC------------------CHHHHHHHTTC
T ss_pred --cCCCCcEEEEEE--C-C--EEEEEEEC--CEEEEEeCCCcCCc------------------HHHHHHHHHHh
Confidence 678899999995 3 3 48899865 69999999997631 26888888765
No 31
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.83 E-value=4.9e-21 Score=187.73 Aligned_cols=169 Identities=20% Similarity=0.219 Sum_probs=102.6
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCcee----e
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFY----E 188 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~----~ 188 (350)
+.|+.+||||+|||.... .+. .++++++.+.+++ +|+||||+|||+|+.++||++.++.+..... .
T Consensus 346 ~~L~~~DgIIlpGG~G~~----~~~----g~i~~ir~a~~~~--~PiLGIClG~Qll~va~Gg~v~g~qda~s~Ef~~~~ 415 (535)
T 3nva_A 346 EILGNVNGIIVLPGFGSR----GAE----GKIKAIKYAREHN--IPFLGICFGFQLSIVEFARDVLGLSEANSTEINPNT 415 (535)
T ss_dssp TTTTSCSEEEECCCCSST----THH----HHHHHHHHHHHHT--CCEEEETHHHHHHHHHHHHTTTCCTTCEETTTCTTC
T ss_pred hhccCCCEEEECCCCCCc----cHH----HHHHHHHHHHHcC--CcEEEECcchhHHHHHhhccccCccCCcccccCCCC
Confidence 568899999999975421 222 2445566655555 9999999999999999999975444332110 0
Q ss_pred eeec-eeecC-------CCCCcc----cccCCchhHHhhcccceE--EEeecceeecCCCccccc-cccceEEEEeecCC
Q psy14047 189 NLAL-EFMPS-------FRQSLL----YSRAPIHVLQELATSHIT--HNWHMWCITPSNFTDNGL-AKEWKVLSTNSNNR 253 (350)
Q Consensus 189 ~~~i-~~~~~-------~~~~~l----f~~~~~~~~~~~~~~~~v--~~~H~~~v~~~~~~~~~L-~~~~~vla~s~~~~ 253 (350)
..|+ .+... .....+ ..-.+.+....+.....+ .+.|++.|.. +..+.+ +++++++|++ +|+
T Consensus 416 ~~pvI~~m~eq~~~~~~ggtmrlg~h~v~l~~gS~L~~iyG~~~I~erHrHryeVNs--~h~q~l~~~GL~vsA~s-~DG 492 (535)
T 3nva_A 416 KDPVITLLDEQKNVTQLGGTMRLGAQKIILKEGTIAYQLYGKKVVYERHRHRYEVNP--KYVDILEDAGLVVSGIS-ENG 492 (535)
T ss_dssp SCEEEECBCSSSCBCSSCCCCEEEEEEEEECTTSHHHHHHTSSEEEEEEEECCEECH--HHHHHHHHTTCEEEEEC-TTC
T ss_pred CCCeeecchhcccccccCCccccCceEEEEcCCCcHHHHhCCCeeeecccccceech--HHHhhcccCCeEEEEEe-CCC
Confidence 1111 11100 000000 001123333333323334 4455666642 111234 6899999997 655
Q ss_pred CceEEEEEEcCCcc-EEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHHHHHHHc
Q psy14047 254 GLKFISSVEHKVYP-FAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQASG 311 (350)
Q Consensus 254 ~~e~v~ai~~~~~~-i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~Fv~~~~~ 311 (350)
. +++++++++| ++|+|||||....+. .++.+|..|+++|++
T Consensus 493 ~---IEAIE~~~~pf~vGVQfHPE~~~~p~--------------~~~~LF~~Fv~Aa~~ 534 (535)
T 3nva_A 493 L---VEIIELPSNKFFVATQAHPEFKSRPT--------------NPSPIYLGFIRAVAS 534 (535)
T ss_dssp C---EEEEECTTSSCEEEESSCGGGGCCSS--------------SCCHHHHHHHHHHTC
T ss_pred C---EEEEEeCCCCcEEEEEeCCEecCCCC--------------ChhHHHHHHHHHHHh
Confidence 4 9999999999 589999999764321 145899999999964
No 32
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.83 E-value=3.1e-21 Score=194.48 Aligned_cols=194 Identities=19% Similarity=0.206 Sum_probs=121.5
Q ss_pred CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCccc
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYA 84 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~ 84 (350)
++|.|+|+.... +. ..+++++|+++|+.++.++..++ ..++.+||||||||+ +..+
T Consensus 3 ~m~~I~Iid~~~-----g~--------~~~~~~~l~~~G~~~~vv~~~~~-----~~l~~~DglILpGgG-~~~~----- 58 (555)
T 1jvn_A 3 HMPVVHVIDVES-----GN--------LQSLTNAIEHLGYEVQLVKSPKD-----FNISGTSRLILPGVG-NYGH----- 58 (555)
T ss_dssp SSCEEEEECCSC-----SC--------CHHHHHHHHHTTCEEEEESSGGG-----CCSTTCSCEEEEECS-CHHH-----
T ss_pred CCCEEEEEECCC-----CC--------HHHHHHHHHHCCCEEEEECCccc-----cccccCCEEEECCCC-chHh-----
Confidence 458999997421 11 15788999999999998874321 135678999998865 3220
Q ss_pred ccceeeeecccchhhhhHHHhhhhhhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehH
Q psy14047 85 KAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICL 164 (350)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~ 164 (350)
..+.+... .+.++++++.+++ +||||||+
T Consensus 59 -----------------------------------------------~~~~l~~~--~~~~~i~~~~~~g--~PiLGIC~ 87 (555)
T 1jvn_A 59 -----------------------------------------------FVDNLFNR--GFEKPIREYIESG--KPIMGIXV 87 (555)
T ss_dssp -----------------------------------------------HHHHHHHT--TCHHHHHHHHHTT--CCEEEEEH
T ss_pred -----------------------------------------------Hhhhhhhc--cHHHHHHHHHHcC--CcEEEEch
Confidence 00111110 1345666666666 99999999
Q ss_pred HHHHHHHHh--cCccccCCccCceee-------------eeeceeecCCCCCcccccCCchhHHhhcccceEEEeeccee
Q psy14047 165 GFQLLLYTS--NNENELRTRCDCFYE-------------NLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCI 229 (350)
Q Consensus 165 G~QlLa~a~--Gg~v~~~~~~~~~~~-------------~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v 229 (350)
|||+|+.++ ||....+...+.... +.++. . . +.+|..++.. ..++++|++++
T Consensus 88 G~QlL~~a~~egg~~~~Lg~lgg~v~~~~~~~~~~~~~G~~~v~---~-~-~~L~~~l~~~--------~~~~~vHS~~~ 154 (555)
T 1jvn_A 88 GLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIGWNSCI---P-S-ENLFFGLDPY--------KRYYFVHSFAA 154 (555)
T ss_dssp HHHTTEEEETTBTTCCCCCSEEEEEEECCTTTSCSSEEEEECCC---C-C-TTCCTTCCTT--------SCEEEEESEEC
T ss_pred hhhhhhhhhhcCCCccccCCCCcEEEECCcCCCCCccccceEEE---E-c-CHHHhhCCCC--------ceEEEEEEEEE
Confidence 999999987 222222222221111 11111 1 1 5677666542 24778888887
Q ss_pred ecCCCcccc----ccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHHHHH
Q psy14047 230 TPSNFTDNG----LAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWL 305 (350)
Q Consensus 230 ~~~~~~~~~----L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~~~F 305 (350)
.... . ||+++.++|++ +.+...++++++. .++||+|||||++. ..+..++++|
T Consensus 155 ~~i~----~~~~~L~~g~~vlA~s-~~~~D~~i~ai~~--~~i~GvQFHPE~s~----------------~~g~~l~~~F 211 (555)
T 1jvn_A 155 ILNS----EKKKNLENDGWKIAKA-KYGSEEFIAAVNK--NNIFATQFHPEKSG----------------KAGLNVIENF 211 (555)
T ss_dssp BCCH----HHHHHHHHTTCEEEEE-EETTEEEEEEEEE--TTEEEESSBGGGSH----------------HHHHHHHHHH
T ss_pred Eecc----cccccCCCCCEEEEEE-cCCCCCeEEEEEe--CCEEEEEeCcEecC----------------hhHHHHHHHH
Confidence 5221 2 36789999986 4321247899994 37999999999652 2468899999
Q ss_pred HHHH
Q psy14047 306 VSQA 309 (350)
Q Consensus 306 v~~~ 309 (350)
++..
T Consensus 212 l~~~ 215 (555)
T 1jvn_A 212 LKQQ 215 (555)
T ss_dssp HTTC
T ss_pred Hhcc
Confidence 9765
No 33
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.83 E-value=4.1e-21 Score=169.30 Aligned_cols=168 Identities=21% Similarity=0.228 Sum_probs=100.5
Q ss_pred HHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCcccccCCcccccceeeeecccchhhhhHHHhhhhhhHH
Q psy14047 33 ASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIE 112 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (350)
.+++++|+++|+.++.++... .++.+|||+||||+ +..+. +..+
T Consensus 16 ~~~~~~l~~~G~~~~~~~~~~-------~l~~~d~lil~G~g-~~~~~------------------~~~l---------- 59 (200)
T 1ka9_H 16 RSAAKALEAAGFSVAVAQDPK-------AHEEADLLVLPGQG-HFGQV------------------MRAF---------- 59 (200)
T ss_dssp HHHHHHHHHTTCEEEEESSTT-------SCSSCSEEEECCCS-CHHHH------------------HHTT----------
T ss_pred HHHHHHHHHCCCeEEEecChH-------HcccCCEEEECCCC-cHHHH------------------HHHH----------
Confidence 667899999999999887432 25678999998855 32200 0000
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH---hcCccccCCccCceee-
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT---SNNENELRTRCDCFYE- 188 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a---~Gg~v~~~~~~~~~~~- 188 (350)
.+. .+.++++++.+++ +||||||+|||+|+.+ +|| ...+...+....
T Consensus 60 --------------------~~~------~~~~~i~~~~~~~--~PilGIC~G~Qll~~~~~~~Gg-~~~l~~~~g~v~~ 110 (200)
T 1ka9_H 60 --------------------QES------GFVERVRRHLERG--LPFLGICVGMQVLYEGSEEAPG-VRGLGLVPGEVRR 110 (200)
T ss_dssp --------------------SSS------CTHHHHHHHHHTT--CCEEECTHHHHTTSSEETTSTT-CCCCCSSSSEEEE
T ss_pred --------------------Hhc------CHHHHHHHHHHcC--CeEEEEcHHHHHHHHhccccCC-cCCccccccEEEE
Confidence 000 1345566666666 9999999999999999 575 222332222211
Q ss_pred ----------eeeceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEE
Q psy14047 189 ----------NLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFI 258 (350)
Q Consensus 189 ----------~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v 258 (350)
..++..+ . + |.+++. ..++++|++++ +. +++ ++ |++ ++++.+ +
T Consensus 111 ~~~~~~~~~G~~~v~~~---~-~--l~~~~~---------~~~~~~Hs~~~-~~-------~~~-~v-a~s-~~~g~~-~ 163 (200)
T 1ka9_H 111 FRAGRVPQMGWNALEFG---G-A--FAPLTG---------RHFYFANSYYG-PL-------TPY-SL-GKG-EYEGTP-F 163 (200)
T ss_dssp CCSSSSSEEEEEECEEC---G-G--GGGGTT---------CEEEEEESEEC-CC-------CTT-CC-EEE-EETTEE-E
T ss_pred CCCCCCCceeEEEEEec---h-h--hhcCCC---------CCEEEeccccc-CC-------CCC-cE-EEE-EeCCeE-E
Confidence 1122111 1 1 333222 35889999998 32 222 56 776 441223 4
Q ss_pred EEEEcCCccEEEEcccCCcCCccccccCCCCCchHHHHhHHHHH---HHHHHHH
Q psy14047 259 SSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFF---DWLVSQA 309 (350)
Q Consensus 259 ~ai~~~~~~i~gvQfHPE~~~~~~~~~~~~~h~~~~~~~~~~i~---~~Fv~~~ 309 (350)
+++.+++ ++||+|||||++. ..+..++ ++|++.|
T Consensus 164 ~~~~~~~-~i~gvQfHPE~~~----------------~~g~~l~~~~~~F~~~~ 200 (200)
T 1ka9_H 164 TALLAKE-NLLAPQFHPEKSG----------------KAGLAFLALARRYFEVL 200 (200)
T ss_dssp EEEEECS-SEEEESSCTTSSH----------------HHHHHHHHHHHHHC---
T ss_pred EEEEeeC-CEEEEecCCCcCc----------------cchhHHHHHHHHHHhhC
Confidence 5555555 8999999999773 2477899 9998765
No 34
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=99.74 E-value=4.4e-17 Score=151.36 Aligned_cols=116 Identities=16% Similarity=0.074 Sum_probs=74.5
Q ss_pred HHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeeeceeecCCCCCcccccCCchhHHhhcccceE
Q psy14047 142 MIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHIT 221 (350)
Q Consensus 142 ~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v 221 (350)
.+++++++. + +|+||||+|+|+++.++||... .......-+..++..+ ...++|+.++++.+ .+
T Consensus 126 ~li~~~~~~---~--~~~lgIC~GaQ~~l~~~~G~~k-~~~~~K~~Gv~~~~~~--~~~~pL~~g~~~~f--------~~ 189 (301)
T 2vdj_A 126 RIMEYSKTN---V--TSTLHICWGAQAGLYHHYGVQK-YPLKEKMFGVFEHEVR--EQHVKLLQGFDELF--------FA 189 (301)
T ss_dssp HHHHHHHHH---E--EEEEEETHHHHHHHHHHHCCCC-EEEEEEEEEEEEEEEC--CSSCGGGTTCCSEE--------EE
T ss_pred HHHHHHHHc---C--CcEEEEcHHHHHHHHHhCCCcc-ccCCCCEEEEEEEEec--CCCCccccCCCCce--------Ee
Confidence 456666654 3 9999999999998888888432 1111122233444332 24677888877654 35
Q ss_pred EEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEEcccCCcCCc
Q psy14047 222 HNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAY 280 (350)
Q Consensus 222 ~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gvQfHPE~~~~ 280 (350)
.++|+..+..+... .+ +++++||.| +.++ ++++..++.+++++|||||.+..
T Consensus 190 phsr~~~~~~~~v~--~~-pga~vLA~S-~~~~---~~~~~~~~~~~~~vQgHpEyd~~ 241 (301)
T 2vdj_A 190 VHSRHTEVRESDIR--EV-KELTLLANS-EEAG---VHLVIGQEGRQVFALGHSEYSCD 241 (301)
T ss_dssp EEEEEEECCHHHHH--TC-TTEEEEEEE-TTTE---EEEEEEGGGTEEEECSCTTCCTT
T ss_pred eeEeccCcCHHHcc--CC-CCCEEEEeC-CCCc---ceEEEecCCCEEEEECCCCCCHH
Confidence 55544222211000 34 399999998 7776 78888866689999999998753
No 35
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=99.68 E-value=1.5e-16 Score=148.19 Aligned_cols=141 Identities=16% Similarity=0.151 Sum_probs=90.7
Q ss_pred hccCCEEEeCCCCCCc---ccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhcCccccCCccCceeeeee
Q psy14047 115 LGQVNGVLIPGGGASF---YADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLA 191 (350)
Q Consensus 115 l~~~dgvIipG~g~~~---~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~Gg~v~~~~~~~~~~~~~~ 191 (350)
.+++||+|++|+.... .+...|... ..+++++++. + +|+||||+|+|+++.++||... .......-+..+
T Consensus 109 ~~~~DglIITGsP~~~~~~ed~~yw~el-~~li~~~~~~---~--~p~LGIC~GaQ~~l~~~~G~~k-~~~~~K~~Gv~~ 181 (312)
T 2h2w_A 109 DRKFDGFIITGAPVELLPFEEVDYWEEL-TEIMEWSRHN---V--YSTMFICWAAQAGLYYFYGIPK-YELPQKLSGVYK 181 (312)
T ss_dssp TCCEEEEEECCCSCTTSCGGGSTTHHHH-HHHHHHHHHH---E--EEEEEETHHHHHHHHHHHCCCC-EEEEEEEEEEEE
T ss_pred ccCcCEEEECCCCCCCCCCccCchHHHH-HHHHHHHHHc---C--CcEEEECHHHHHHHHHhCCCcc-ccCCCCEEEEEE
Confidence 4679999999988533 223344432 2456666654 3 9999999999998888888532 121122223344
Q ss_pred ceeecCCCCCcccccCCchhHHhhcccceEEEeecceeecCCCccccccccceEEEEeecCCCceEEEEEEcCCccEEEE
Q psy14047 192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGI 271 (350)
Q Consensus 192 i~~~~~~~~~~lf~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~e~v~ai~~~~~~i~gv 271 (350)
+..+. .++|+.++++.+ .+.++|+..+..+.. ..++++++||.| +.++ ++++..++.+++++
T Consensus 182 ~~~~~---~~pL~~g~~~~f--------~vphsr~~e~~~~~v---~~~pga~vLA~S-~~~~---~q~~~~~~~~~~~v 243 (312)
T 2h2w_A 182 HRVAK---DSVLFRGHDDFF--------WAPHSRYTEVKKEDI---DKVPELEILAES-DEAG---VYVVANKSERQIFV 243 (312)
T ss_dssp EEESS---CCGGGTTCCSEE--------EEEEEEEEECCHHHH---TTCC-CEEEEEE-TTTE---EEEEECSSSSEEEE
T ss_pred EEEcC---CCccccCCCCce--------EeeEEeccccCHHHc---cCCCCCEEEEcC-CCCc---ceEEEecCCCEEEE
Confidence 44432 677888877654 356655444321110 122599999998 7776 88998877789999
Q ss_pred cccCCcCCc
Q psy14047 272 QFHPEKNAY 280 (350)
Q Consensus 272 QfHPE~~~~ 280 (350)
|||||.+..
T Consensus 244 QgHPEyd~~ 252 (312)
T 2h2w_A 244 TGHPEYDRY 252 (312)
T ss_dssp CSCTTCCTT
T ss_pred ECCCCCCHH
Confidence 999998753
No 36
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.19 E-value=1.5e-10 Score=125.37 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=38.6
Q ss_pred CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCC
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGG 74 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~ 74 (350)
.+|.|+|...+... ...++.++++++|+.++.++... ...-...++.+|+|+||||.
T Consensus 1046 ~~pkVaIi~~~G~N------------~~~~~~~A~~~aG~~~~~v~~~d-l~~~~~~l~~~d~lvlPGGf 1102 (1303)
T 3ugj_A 1046 ARPKVAVLREQGVN------------SHVEMAAAFHRAGFDAIDVHMSD-LLGGRIGLGNFHALVACGGF 1102 (1303)
T ss_dssp CCCEEEEEECTTCC------------CHHHHHHHHHHTTCEEEEEEHHH-HHTTSCCGGGCSEEEECCSC
T ss_pred CCCEEEEEecCCcC------------CHHHHHHHHHHhCCceEEEeecc-cccCcccHhhCCEEEECCCC
Confidence 57999999877531 23677889999999998887521 00001125678888888886
No 37
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.63 E-value=1e-07 Score=83.82 Aligned_cols=36 Identities=14% Similarity=-0.004 Sum_probs=29.1
Q ss_pred chHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 133 DDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 133 ~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
+..|.... |.+.++++.++| +|++|||.|+|+++..
T Consensus 94 ~~~L~~~g--l~~~l~~~~~~G--~p~~G~sAGa~~l~~~ 129 (206)
T 3l4e_A 94 LQELKRTG--ADKLILEEIAAG--KLYIGESAGAVITSPN 129 (206)
T ss_dssp HHHHHHHT--HHHHHHHHHHTT--CEEEEETHHHHTTSSB
T ss_pred HHHHHHCC--hHHHHHHHHHcC--CeEEEECHHHHHhccc
Confidence 44555543 788899988888 9999999999999854
No 38
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=98.44 E-value=1.2e-07 Score=84.75 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=45.2
Q ss_pred HHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh
Q psy14047 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS 173 (350)
Q Consensus 113 ~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~ 173 (350)
+.+.++|+|++|| |.+...+..|.... |.+.++++.++| +|++|||.|+|+|+...
T Consensus 75 ~~l~~ad~I~lpG-G~~~~~~~~l~~~g--l~~~l~~~~~~G--~p~~G~sAG~~~l~~~~ 130 (229)
T 1fy2_A 75 AAIEKAEIIIVGG-GNTFQLLKESRERG--LLAPMADRVKRG--ALYIGWSAGANLACPTI 130 (229)
T ss_dssp HHHHHCSEEEECC-SCHHHHHHHHHHTT--CHHHHHHHHHTT--CEEEEETHHHHHTSSBS
T ss_pred HHHhcCCEEEECC-CcHHHHHHHHHHCC--hHHHHHHHHHcC--CEEEEECHHHHhhcccc
Confidence 5678899999999 66555556666543 788899888888 99999999999999743
No 39
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=97.37 E-value=0.00012 Score=63.07 Aligned_cols=50 Identities=26% Similarity=0.549 Sum_probs=38.1
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
+.+|+||+||+... ..+.. ...+.++++++.+++ +||.|||.|.++|+.+
T Consensus 85 ~~~D~livpGG~~~----~~l~~-~~~l~~~l~~~~~~g--k~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 85 AEFDALLLPGGHSP----DYLRG-DNRFVTFTRDFVNSG--KPVFAICHGPQLLISA 134 (193)
T ss_dssp GGCSEEEECCBTHH----HHHTT-SHHHHHHHHHHHHTT--CCEEEETTTHHHHHHH
T ss_pred ccCCEEEECCCcCH----HHhhh-CHHHHHHHHHHHHcC--CEEEEECHHHHHHHHC
Confidence 56899999998431 12211 014788899988888 9999999999999987
No 40
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=97.18 E-value=0.00086 Score=57.80 Aligned_cols=51 Identities=29% Similarity=0.433 Sum_probs=38.3
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
..+|.||+||+.... ..+.. ...+.++++++.+++ +||.+||.|.++|+.+
T Consensus 65 ~~~D~livpGG~~~~---~~l~~-~~~~~~~l~~~~~~g--k~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 65 GPYDVVVLPGGNLGA---QNLSE-SAAVKEILKEQENRK--GLIATICAGPTALLAH 115 (197)
T ss_dssp CCCSEEEECCCHHHH---HHHHH-CHHHHHHHHHHHHTT--CEEEEETTTHHHHHHT
T ss_pred cCCCEEEECCCchhH---HHhhh-CHHHHHHHHHHHHcC--CEEEEECHHHHHHHHC
Confidence 679999999974211 11211 124788999998888 9999999999999976
No 41
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=96.94 E-value=0.0055 Score=53.45 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=37.7
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
+.+|.||+||+..... ..-. .+.++++++.++| ++|.+||.|..+|+.+
T Consensus 73 ~~~D~livpGG~~~~~--~~~~----~l~~~l~~~~~~g--k~iaaiC~G~~~La~a 121 (212)
T 3efe_A 73 ESKDLLILPGGTTWSE--EIHQ----PILERIGQALKIG--TIVAAICGATDALANM 121 (212)
T ss_dssp CTTCEEEECCCSCTTS--GGGH----HHHHHHHHHHHHT--CEEEEETHHHHHHHHT
T ss_pred cCCCEEEECCCCcccc--ccCH----HHHHHHHHHHHCC--CEEEEEcHHHHHHHHc
Confidence 3789999999865321 1111 3778888888887 9999999999999875
No 42
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=96.91 E-value=0.0011 Score=55.86 Aligned_cols=54 Identities=15% Similarity=0.237 Sum_probs=38.6
Q ss_pred hccCCEEEeCCC--C-CCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 115 LGQVNGVLIPGG--G-ASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~--g-~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
...+|.||+||+ . .... ...+.. ...+.++++++.+++ +||.+||.|.++|+.+
T Consensus 64 ~~~~D~livpGG~~~~~~~~-l~~~~~-~~~~~~~l~~~~~~g--k~i~aiC~G~~~La~a 120 (175)
T 3cne_A 64 EDEFDALVFSCGDAVPVFQQ-YANQPY-NVDLMEVIKTFGEKG--KMMIGHCAGAMMFDFT 120 (175)
T ss_dssp GGGCSEEEEECCTTGGGGGG-CTTCHH-HHHHHHHHHHHHHTT--CEEEEETTHHHHHHHT
T ss_pred cccCCEEEECCCcCcccHHH-Hhhccc-CHHHHHHHHHHHHCC--CEEEEECHHHHHHHHC
Confidence 367999999998 3 2211 110001 114788999998888 9999999999999976
No 43
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=96.87 E-value=0.0011 Score=56.42 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=38.3
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
..+||+||+|||..... . ... ..+.++++++.+++ +||.+||.|-.+|+.+
T Consensus 67 ~~~yD~liiPGG~g~~~-l--~~~--~~~~~~l~~~~~~~--k~iaaIC~g~~~La~a 117 (177)
T 4hcj_A 67 AVEFDAVVFVGGIGCIT-L--WDD--WRTQGLAKLFLDNQ--KIVAGIGSGVVIMANA 117 (177)
T ss_dssp GGGCSEEEECCSGGGGG-G--TTC--HHHHHHHHHHHHTT--CEEEEETTHHHHHHHT
T ss_pred HhHCCEEEECCCccHHH-H--hhC--HHHHHHHHHHHHhC--CEEEEecccHHHHHHC
Confidence 45799999999854321 1 111 13778889988888 9999999999999875
No 44
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=96.77 E-value=0.0008 Score=56.32 Aligned_cols=50 Identities=24% Similarity=0.466 Sum_probs=37.7
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
..+|.||+||+... ..+.. ...+.++++++.+++ +||.+||.|.++|+.+
T Consensus 62 ~~~D~livpGG~~~----~~~~~-~~~l~~~l~~~~~~~--k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 62 DEFDALVLPGGKAP----EIVRL-NEKAVMITRRMFEDD--KPVASICHGPQILISA 111 (168)
T ss_dssp GGCSEEEECCBSHH----HHHTT-CHHHHHHHHHHHHTT--CCEEEETTTHHHHHHT
T ss_pred hhCCEEEECCCcCH----HHhcc-CHHHHHHHHHHHHCC--CEEEEECHhHHHHHHC
Confidence 36899999997532 11111 114788899988888 9999999999999975
No 45
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=96.69 E-value=0.00064 Score=58.15 Aligned_cols=51 Identities=27% Similarity=0.412 Sum_probs=36.8
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
..+|+||+||+.... ..+.. ...+.++++++.++| +||.+||.|.++|+.+
T Consensus 74 ~~~D~livpGG~~~~---~~~~~-~~~l~~~l~~~~~~g--k~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 74 SDYDGLLLPGGTVNP---DKLRL-EEGAMKFVRDMYDAG--KPIAAICHGPWSLSET 124 (190)
T ss_dssp GGCSEEEECCCTHHH---HHHTT-CHHHHHHHHHHHHTT--CCEEEC-CTTHHHHHT
T ss_pred hhCCEEEECCCchhH---HHHhh-CHHHHHHHHHHHHcC--CEEEEECHhHHHHHhC
Confidence 468999999975211 11110 114788899988888 9999999999999976
No 46
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=96.65 E-value=0.0017 Score=56.60 Aligned_cols=51 Identities=14% Similarity=0.333 Sum_probs=36.8
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHH-HHHHHH
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGF-QLLLYT 172 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~-QlLa~a 172 (350)
..+|.||+||+.... ..+.. ...+.++++++.+++ ++|.+||.|. .+|+.+
T Consensus 70 ~~~D~livpGG~~~~---~~l~~-~~~l~~~l~~~~~~g--k~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 70 EAFDALALPGGVGGA---QAFAD-STALLALIDAFSQQG--KLVAAICATPALVFAKQ 121 (208)
T ss_dssp GGCSEEEECCCHHHH---HHHHT-CHHHHHHHHHHHHTT--CEEEEETTHHHHTTTTT
T ss_pred cCCCEEEECCCchHH---HHHhh-CHHHHHHHHHHHHcC--CEEEEEChhHHHHHHHC
Confidence 468999999974211 11111 124788999998888 9999999998 788764
No 47
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=96.59 E-value=0.00094 Score=59.24 Aligned_cols=58 Identities=14% Similarity=0.294 Sum_probs=40.2
Q ss_pred hccCCEEEeCCCCCCcccchHHHH------HHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhc
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAK------AGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN 174 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~------~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~G 174 (350)
.+.+|+||+|||......+..+.. ....+.++++++.++| +||.+||.|-++|+.++.
T Consensus 88 ~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g--k~vaaIC~G~~~La~aL~ 151 (232)
T 1vhq_A 88 AAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAG--KPLGFMCIAPAMLPKIFD 151 (232)
T ss_dssp GGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTT--CCEEEETTGGGGHHHHCS
T ss_pred cccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcC--CEEEEECHHHHHHHHHhc
Confidence 457999999998543110111100 0014778899988888 999999999999998844
No 48
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=96.52 E-value=0.012 Score=59.62 Aligned_cols=54 Identities=11% Similarity=0.077 Sum_probs=37.2
Q ss_pred ccCCEEEeCCCCCCccc----chHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 116 GQVNGVLIPGGGASFYA----DDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~----~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
..||+||+|||...... .+.+... ..++++++++.+.+ |||-.||.|-++|..+
T Consensus 589 ~~fDAVvlPGG~~~~~~~~~~~d~Lr~~-~~a~~fV~e~~~hg--KpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 589 TAFDAVVVAEGAERVFSGKGAMSPLFPA-GRPSQILTDGYRWG--KPVAAVGSAKKALQSI 646 (688)
T ss_dssp GGCSEEEECTTCCTTTSTTTTCCTTSCT-THHHHHHHHHHHTT--CCEEEEGGGHHHHHHT
T ss_pred hcCcEEEECCCcccccccccchhhhccC-HHHHHHHHHHHHcC--CEEEEeCccHHHHHHc
Confidence 35899999988553200 0112100 13678889988888 9999999999999876
No 49
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=96.51 E-value=0.0038 Score=54.36 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=38.1
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
+.+|.||+||+..... .+ . .+.++++++.+++ ++|.+||.|..+|+.+
T Consensus 62 ~~~D~livpGG~~~~~-~~--~----~l~~~l~~~~~~g--k~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 62 ANFNLLVMIGGDSWSN-DN--K----KLLHFVKTAFQKN--IPIAAICGAVDFLAKN 109 (206)
T ss_dssp SCCSEEEECCBSCCCC-CC--H----HHHHHHHHHHHTT--CCEEEETHHHHHHHHT
T ss_pred cCCCEEEEcCCCChhh-cC--H----HHHHHHHHHHHcC--CEEEEECHHHHHHHHc
Confidence 4689999999865432 11 1 3778899988888 9999999999999876
No 50
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=96.31 E-value=0.0012 Score=57.46 Aligned_cols=52 Identities=17% Similarity=0.395 Sum_probs=38.3
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHH-HHHHHH
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGF-QLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~-QlLa~a 172 (350)
...+|+||+||+.... ..+.. ...+.++++++.++| +||.+||.|. ++|+.+
T Consensus 64 ~~~~D~livpGG~~~~---~~l~~-~~~l~~~l~~~~~~g--k~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 64 DGEYDVIVLPGGIKGA---ECFRD-STLLVETVKQFHRSG--RIVAAICAAPATVLVPH 116 (205)
T ss_dssp TSCCSEEEECCCHHHH---HHHHH-CHHHHHHHHHHHHTT--CEEEEETHHHHHHTTTT
T ss_pred cccCCEEEECCCcccH---HHhcc-CHHHHHHHHHHHHcC--CEEEEECHhHHHHHHHC
Confidence 3679999999984211 11211 124788999998888 9999999999 999864
No 51
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=96.30 E-value=0.0015 Score=55.75 Aligned_cols=49 Identities=24% Similarity=0.315 Sum_probs=36.6
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
+.+|+||+||+.......+ ..+.++++++.+++ +||.+||.|.++|+.+
T Consensus 62 ~~~D~livpGG~~~~~~~~------~~l~~~l~~~~~~~--k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 62 VDIDALVIPGGLSWEKGTA------ADLGGLVKRFRDRD--RLVAGICAAASALGGT 110 (188)
T ss_dssp TTCSEEEECCBSHHHHTCC------CCCHHHHHHHHHTT--CEEEEETHHHHHHHHT
T ss_pred ccCCEEEECCCCccccccc------HHHHHHHHHHHHCC--CEEEEECHHHHHHHHC
Confidence 3689999999853211001 13677888888887 9999999999999975
No 52
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=96.29 E-value=0.0054 Score=56.26 Aligned_cols=59 Identities=14% Similarity=0.144 Sum_probs=42.4
Q ss_pred hhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHH
Q psy14047 109 LKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLY 171 (350)
Q Consensus 109 ~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~ 171 (350)
.++.+.+.++|+|+++||..... ...|..+ .+.+.++++.++| +.|+.|+|.|.-+++.
T Consensus 102 ~~~~~~l~~ad~I~v~GGnt~~l-~~~l~~t--~l~~~L~~~~~~G-~~~~~GtSAGA~i~~~ 160 (291)
T 3en0_A 102 SGYRLFVEQCTGIFMTGGDQLRL-CGLLADT--PLMDRIRQRVHNG-EISLAGTSAGAAVMGH 160 (291)
T ss_dssp HHHHHHHHHCSEEEECCSCHHHH-HHHHTTC--HHHHHHHHHHHTT-SSEEEEETHHHHTTSS
T ss_pred HHHHHHHhcCCEEEECCCCHHHH-HHHHHhC--CHHHHHHHHHHCC-CeEEEEeCHHHHhhhH
Confidence 34567788899999998754321 2233333 4778888888776 3799999999988874
No 53
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=96.29 E-value=0.0034 Score=54.69 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=39.2
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
+..+|.||+||+.........-. ..+.++++++.++| ++|.+||-|..+|+.+
T Consensus 72 ~~~~D~livpGg~~~~~~~~~~~---~~l~~~l~~~~~~g--~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 72 FDFTNILIIGSIGDPLESLDKID---PALFDWIRELHLKG--SKIVAIDTGIFVVAKA 124 (209)
T ss_dssp CSCCSEEEECCCSCHHHHGGGSC---HHHHHHHHHHHHTT--CEEEEETTHHHHHHHH
T ss_pred cCCCCEEEECCCCCchhhhccCC---HHHHHHHHHHHhcC--CEEEEEcHHHHHHHHc
Confidence 46799999999865322100001 14788899988888 9999999999999987
No 54
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=96.22 E-value=0.0019 Score=55.20 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=37.6
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
..+|.||+||+... ...+... ..+.++++++.+++ +||.+||.|.++|+.+
T Consensus 66 ~~~D~livpGG~~~---~~~~~~~-~~~~~~l~~~~~~~--k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 66 DKFDVVVLPGGLGG---SNAMGES-SLVGDLLRSQESGG--GLIAAICAAPTVLAKH 116 (190)
T ss_dssp CCCSEEEECCCHHH---HHHHHHC-HHHHHHHHHHHHTT--CEEEEETTTHHHHHHT
T ss_pred ccCCEEEECCCChH---HHHhhhC-HHHHHHHHHHHHCC--CEEEEECHHHHHHHHC
Confidence 46899999997321 1112111 24788899998888 9999999999999875
No 55
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=96.21 E-value=0.0081 Score=61.45 Aligned_cols=49 Identities=14% Similarity=-0.052 Sum_probs=37.1
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
..||+||+||| .... ...-. .++++++++.+.+ +||-+||.|-++|+.+
T Consensus 660 ~~fDALVVPGG-g~~~-Lr~d~----~vl~~Vre~~~~g--KpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 660 LTVDAVIVPCG-NIAD-IADNG----DANYYLMEAYKHL--KPIALAGDARKFKATI 708 (753)
T ss_dssp GGCSEEEECCS-CGGG-TTTCH----HHHHHHHHHHHTT--CCEEEEGGGGGGGGGG
T ss_pred cCCCEEEECCC-ChHH-hhhCH----HHHHHHHHHHhcC--CeEEEECchHHHHHHc
Confidence 35899999999 3221 11111 3778899999888 9999999999999876
No 56
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=96.17 E-value=0.003 Score=56.47 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=38.7
Q ss_pred hccCCEEEeCCCCCCcccchHH--------HHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHh
Q psy14047 115 LGQVNGVLIPGGGASFYADDGY--------AKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS 173 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~--------~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~ 173 (350)
.+.+|+||+|||.........+ .. ...+.++++++.++| +||.+||.|..+|+.+.
T Consensus 105 ~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~-~~~l~~~lr~~~~~g--k~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 105 VEEFDMLVIPGGYGVAKNFSNLFDEDKENDYI-LPEFKNAVREFYNAK--KPIGAVCISPAVVVALL 168 (242)
T ss_dssp GGGCSEEEECCCHHHHHHHBSTTSCC--CCCB-CHHHHHHHHHHHHTT--CCEEEETTHHHHHHHHH
T ss_pred cccCCEEEEcCCcchhhhhhhhhccccccccC-CHHHHHHHHHHHHcC--CEEEEECHHHHHHHHhC
Confidence 3579999999985321000000 00 013778889988888 99999999999999874
No 57
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=96.15 E-value=0.0049 Score=53.38 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=38.9
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
...+|.||+||+...... . . .+.++++++.++| ++|.+||-|..+|+.+
T Consensus 69 ~~~~D~livpGG~~~~~~--~-~----~l~~~l~~~~~~g--~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 69 LKELDLLVVCGGLRTPLK--Y-P----ELDRLLNDCAAHG--MALGGLWNGAWFLGRA 117 (202)
T ss_dssp GTTCSEEEEECCTTCCSC--C-T----THHHHHHHHHHHT--CEEEEETTHHHHHHHH
T ss_pred CCCCCEEEEeCCCchhhc--c-H----HHHHHHHHHHhhC--CEEEEECHHHHHHHHc
Confidence 457899999998654432 1 2 3778888888887 9999999999999987
No 58
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=96.00 E-value=0.0018 Score=56.82 Aligned_cols=52 Identities=17% Similarity=0.371 Sum_probs=38.3
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
...+|+||+||+.........- ..+.++++++.+++ +||.+||.|-++|+.+
T Consensus 87 ~~~~D~livpGG~~~~~~l~~~----~~l~~~l~~~~~~~--k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 87 AHGFDAIFLPGGHGTMFDFPDN----ETLQYVLQQFAEDG--RIIAAVCHGPSGLVNA 138 (224)
T ss_dssp GSSCSEEEECCCTTHHHHSTTC----HHHHHHHHHHHHTT--CEEEEETTGGGGGTTC
T ss_pred hhhCCEEEECCCcchHHHhhcC----HHHHHHHHHHHHCC--CEEEEEChHHHHHHHc
Confidence 3579999999986532111111 14778889988888 9999999999998865
No 59
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=95.64 E-value=0.0026 Score=56.81 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=38.3
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
.+.+|+||+|||.........- ..+.++++++.++| +||.+||.|-.+|+.+
T Consensus 96 ~~~~D~livpGG~~~~~~l~~~----~~l~~~l~~~~~~g--k~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 96 ADDYQIFFASAGHGTLFDYPKA----KDLQDIASEIYANG--GVVAAVCHGPAIFDGL 147 (243)
T ss_dssp GGGEEEEEECCSTTHHHHGGGC----HHHHHHHHHHHHTT--CEEEEETTGGGGGTTC
T ss_pred HhhCcEEEECCCCCchhhcccC----HHHHHHHHHHHHcC--CEEEEECCCHHHHHhc
Confidence 3579999999986532111111 14778889988888 9999999999988876
No 60
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=95.47 E-value=0.0045 Score=55.49 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=38.4
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
.+.||+|++|||......... . ..+.++++++.++| +||.+||.|-.+|+.+
T Consensus 103 ~~~yD~l~ipGG~g~~~~l~~-~---~~l~~~l~~~~~~g--k~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 103 PHDYGLMFVCGGHGALYDFPH-A---KHLQNIAQDIYKRG--GVIGAVCHGPAMLPGI 154 (247)
T ss_dssp GGGCSEEEECCSTTHHHHGGG-C---HHHHHHHHHHHHTT--CEEEEETTGGGGGGGC
T ss_pred hhhCCEEEEeCCCchhhhccc-C---HHHHHHHHHHHHcC--CEEEEEChHHHHHHHh
Confidence 457999999998643111111 1 14778889988888 9999999999998765
No 61
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=95.44 E-value=0.032 Score=57.25 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=38.7
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhc
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN 174 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~G 174 (350)
..+|+||+|||... ...+.. ...+.++++++.+.| +||.+||.|..+|+.++|
T Consensus 594 ~~yDaViVPGG~~~---~~~l~~-~~~l~~~Lr~~~~~g--K~IaAIC~G~~lLA~AlG 646 (715)
T 1sy7_A 594 TMVDAIFIPGGAKA---AETLSK-NGRALHWIREAFGHL--KAIGATGEAVDLVAKAIA 646 (715)
T ss_dssp GGSSEEEECCCHHH---HHHHHT-CHHHHHHHHHHHHTT--CEEEEETTHHHHHHHHHC
T ss_pred ccCCEEEEcCCccc---Hhhhcc-CHHHHHHHHHHHhCC--CEEEEECHHHHHHHHccC
Confidence 46899999997311 111211 114788899988888 999999999999998853
No 62
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=95.33 E-value=0.0069 Score=54.14 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=38.5
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
.+.||+|++|||.........- ..+.++++++.++| +||.+||.|-.+|+.+
T Consensus 96 ~~~yD~l~vpGG~~~~~~l~~~----~~l~~~l~~~~~~g--k~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 96 ASDYKVFFASAGHGALFDYPKA----KNLQDIASKIYANG--GVIAAICHGPLLFDGL 147 (244)
T ss_dssp GGGCSEEEECCSTTHHHHGGGC----HHHHHHHHHHHHTT--CEEEEETTGGGGGTTC
T ss_pred HhhCCEEEEcCCCchhhhcccC----HHHHHHHHHHHHcC--CEEEEECHHHHHHHHh
Confidence 4579999999986532111111 14778889988888 9999999999998865
No 63
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=95.31 E-value=0.014 Score=51.67 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=38.1
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
+..+|.||+||+.... .+.. ...+.++++++.+++ ++|.+||-|..+|+.+
T Consensus 63 ~~~~D~livpGG~g~~----~~~~-~~~l~~~lr~~~~~g--~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 63 CPPLDVICIPGGTGVG----ALME-DPQALAFIRQQAARA--RYVTSVSTGSLVLGAA 113 (231)
T ss_dssp CCCCSEEEECCSTTHH----HHTT-CHHHHHHHHHHHTTC--SEEEEETTHHHHHHHT
T ss_pred CCcCCEEEECCCCChh----hhcc-CHHHHHHHHHHHhcC--CEEEEECHHHHHHHHc
Confidence 3569999999985421 1110 014788999998888 9999999999999875
No 64
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=94.99 E-value=0.046 Score=55.61 Aligned_cols=28 Identities=11% Similarity=-0.118 Sum_probs=24.1
Q ss_pred HHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 143 IYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 143 l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
++++++++.+.| |||-.||.|-++|..+
T Consensus 621 ~~~~v~~~~~~g--KpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 621 PLNILLDAFRFG--KTVGALGSGSDALESG 648 (688)
T ss_dssp HHHHHHHHHHHT--CEEEEEGGGHHHHHHT
T ss_pred HHHHHHHHHHcC--CEEEEECchHHHHHHc
Confidence 667888888888 9999999999988765
No 65
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=94.84 E-value=0.018 Score=54.98 Aligned_cols=51 Identities=31% Similarity=0.534 Sum_probs=38.5
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
...+|.||+||+... ..+.. ...+.++++++.+++ +||.+||.|.++|+.+
T Consensus 280 ~~~~D~livpGg~~~----~~~~~-~~~~~~~l~~~~~~~--~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 280 SSSYDALVIPGGRAP----EYLAL-NEHVLNIVKEFMNSE--KPVASICHGQQILAAA 330 (396)
T ss_dssp GGGCSEEEECCBSHH----HHHTT-CHHHHHHHHHHHHTT--CCEEEEGGGHHHHHHT
T ss_pred cccCCEEEECCCcch----hhhcc-CHHHHHHHHHHHHCC--CEEEEEchHHHHHHHc
Confidence 357999999998532 11111 114788899998888 9999999999999976
No 66
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=94.76 E-value=0.0088 Score=54.87 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=38.0
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
.+.+|+||+|||.........-. .+.++++++.++| ++|.+||.|-.+|+.+
T Consensus 143 ~~~yD~livPGG~g~~~~l~~~~----~l~~~l~~~~~~g--k~VaaIC~Gp~~La~a 194 (291)
T 1n57_A 143 DSEYAAIFVPGGHGALIGLPESQ----DVAAALQWAIKND--RFVISLCHGPAAFLAL 194 (291)
T ss_dssp TCSEEEEEECCSGGGGSSGGGCH----HHHHHHHHHHHTT--CEEEEETTGGGGGGGG
T ss_pred cccCCEEEecCCcchhhhhhhCH----HHHHHHHHHHHcC--CEEEEECccHHHHHhh
Confidence 57899999999843321111111 3778888888888 9999999999887765
No 67
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=94.75 E-value=0.0092 Score=51.99 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=36.8
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
..+|.||+||+.... .+.. ...+.++++++.+++ ++|.+||-|-.+|+.+
T Consensus 64 ~~~D~livpGG~~~~----~~~~-~~~~~~~l~~~~~~~--k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 64 NIEKILFVPGGSGTR----EKVN-DDNFINFIGNMVKES--KYIISVCTGSALLSKA 113 (211)
T ss_dssp SSEEEEEECCSTHHH----HHTT-CHHHHHHHHHHHHHC--SEEEECTTHHHHHHHT
T ss_pred CCCCEEEECCCcchh----hhcC-CHHHHHHHHHHHHcC--CEEEEEchHHHHHHhc
Confidence 347999999985321 1210 014788899988888 9999999999999875
No 68
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=94.40 E-value=0.02 Score=51.35 Aligned_cols=49 Identities=18% Similarity=0.269 Sum_probs=36.7
Q ss_pred cCCEEEeCCCC-CCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 117 QVNGVLIPGGG-ASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 117 ~~dgvIipG~g-~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
.||.||+|||. ... .+.. ...+.++++++.++| ++|.+||-|..+|+.+
T Consensus 84 ~yD~liVPGG~~g~~----~l~~-~~~l~~~Lr~~~~~g--k~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 84 DLTVLFAPGGTDGTL----AAAS-DAETLAFMADRGARA--KYITSVCSGSLILGAA 133 (253)
T ss_dssp SCSEEEECCBSHHHH----HHTT-CHHHHHHHHHHHTTC--SEEEEETTHHHHHHHT
T ss_pred CCCEEEECCCccchh----hhcc-CHHHHHHHHHHHHcC--CEEEEEChHHHHHHHc
Confidence 57999999975 221 1110 114788999998888 9999999999999876
No 69
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=94.26 E-value=0.026 Score=53.86 Aligned_cols=51 Identities=35% Similarity=0.557 Sum_probs=38.5
Q ss_pred hccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
...+|.||+||+.... .+.. ...+.++++++.+++ +||.+||.|.++|+.+
T Consensus 87 ~~~~D~livpGG~~~~----~~~~-~~~~~~~l~~~~~~~--~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 87 LSKYDGLVIPGGRAPE----YLAL-TASVVELVKEFSRSG--KPIASICHGQLILAAA 137 (396)
T ss_dssp GGGCSEEEECCBSHHH----HHTT-CHHHHHHHHHHHHTT--CCEEEETTTHHHHHHT
T ss_pred cccCCEEEECCCcchh----hccc-CHHHHHHHHHHHHcC--CEEEEECchHHHHHhc
Confidence 3579999999985321 1111 114788899998888 9999999999999976
No 70
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=94.05 E-value=0.029 Score=53.06 Aligned_cols=50 Identities=24% Similarity=0.370 Sum_probs=37.7
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
..+|.||+||+.... .+.. ...+.++++++.++| ++|.+||.|..+|+.+
T Consensus 72 ~~~DaLiVPGG~g~~----~l~~-~~~l~~~Lr~~~~~g--k~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 72 SEFDAVVIPGGMAPD----KMRR-NPNTVRFVQEAMEQG--KLVAAVCHGPQVLIEG 121 (365)
T ss_dssp GGCSEEEECCBTHHH----HHTT-CHHHHHHHHHHHHTT--CEEEEETTTHHHHHHT
T ss_pred cCCCEEEEECCcchh----hccC-CHHHHHHHHHHHHCC--CEEEEECHHHHHHHHc
Confidence 368999999986321 1110 014788899988888 9999999999999876
No 71
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=92.98 E-value=0.035 Score=47.58 Aligned_cols=50 Identities=26% Similarity=0.370 Sum_probs=33.1
Q ss_pred HhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHH
Q psy14047 114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQL 168 (350)
Q Consensus 114 ~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~Ql 168 (350)
.++.||+||+|||... ...+.. ...+.++++++.+++ .++|-.||.|..+
T Consensus 70 ~~~~yD~lvvPGG~~~---~~~l~~-~~~l~~~l~~~~~~~-~k~iaaiC~g~~l 119 (194)
T 4gdh_A 70 FAKQYDIAIIPGGGLG---AKTLST-TPFVQQVVKEFYKKP-NKWIGMICAGTLT 119 (194)
T ss_dssp HHHHCSEEEECCCHHH---HHHHHT-CHHHHHHHHHHTTCT-TCEEEEEGGGGHH
T ss_pred ccccCCEEEECCCchh---HhHhhh-CHHHHHHHHHhhhcC-CceEEeecccccc
Confidence 4567999999997422 112211 124778888876542 2899999999843
No 72
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=90.56 E-value=0.1 Score=46.14 Aligned_cols=50 Identities=18% Similarity=0.066 Sum_probs=33.1
Q ss_pred hccCCEEEeCCCC-CCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHH
Q psy14047 115 LGQVNGVLIPGGG-ASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172 (350)
Q Consensus 115 l~~~dgvIipG~g-~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a 172 (350)
...+|.||+||+. ... .+.. ...+.+++ +.+++ +++|.+||-|-.+|+.+
T Consensus 78 ~~~~D~liVPGG~~g~~----~l~~-~~~l~~~L--~~~~~-~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 78 VKEQDVVLITSGYRGIP----AALQ-DENFMSAL--KLDPS-RQLIGSICAGSFVLHEL 128 (236)
T ss_dssp GGGCSEEEECCCTTHHH----HHHT-CHHHHHHC--CCCTT-TCEEEEETTHHHHHHHT
T ss_pred ccCCCEEEEcCCccCHh----hhcc-CHHHHHHH--HhCCC-CCEEEEEcHHHHHHHHc
Confidence 4679999999983 221 1111 11366777 44444 24999999999999976
No 73
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=88.63 E-value=0.39 Score=39.88 Aligned_cols=74 Identities=11% Similarity=0.054 Sum_probs=41.7
Q ss_pred CCCCCEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHcCCeEEEEecCCCHHHHH----Hhhc-ccceEEcCCCCcc
Q psy14047 3 ATERPIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEASGARVAPIFIGNPEAYYR----KILG-QVNGVLIPGGGAS 76 (350)
Q Consensus 3 ~~~~p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~----~~l~-~~dGli~~GG~~d 76 (350)
.|.+|.++|++.-.+. ..+. .+--......+|+++|+.++......|++.+. +.++ ..|-||.+||. .
T Consensus 4 ~~~~~rv~ii~tGdEl-----~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd~~i~~al~~a~~~~~DlVittGG~-s 77 (164)
T 3pzy_A 4 SMTTRSARVIIASTRA-----SSGEYEDRCGPIITEWLAQQGFSSAQPEVVADGSPVGEALRKAIDDDVDVILTSGGT-G 77 (164)
T ss_dssp ---CCEEEEEEECHHH-----HC----CCHHHHHHHHHHHTTCEECCCEEECSSHHHHHHHHHHHHTTCSEEEEESCC-S
T ss_pred CCCCCEEEEEEECCCC-----CCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCHHHHHHHHHHHHhCCCCEEEECCCC-C
Confidence 5788999999865331 1111 22223344578889999986443322224443 3444 68999999997 5
Q ss_pred cccCCc
Q psy14047 77 FYADDG 82 (350)
Q Consensus 77 v~~~~~ 82 (350)
+.++|+
T Consensus 78 ~g~~D~ 83 (164)
T 3pzy_A 78 IAPTDS 83 (164)
T ss_dssp SSTTCC
T ss_pred CCCCcc
Confidence 665543
No 74
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=79.37 E-value=1.8 Score=36.57 Aligned_cols=73 Identities=14% Similarity=0.061 Sum_probs=43.0
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCC-CHHHHH----Hhh-cccceEEcCCCCccc
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGN-PEAYYR----KIL-GQVNGVLIPGGGASF 77 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~-~~~~~~----~~l-~~~dGli~~GG~~dv 77 (350)
-.+|.|+|.+.-.+. ..+. .+--......+|++.|+.++...... +.+.+. +.+ +..|-||.+||. .+
T Consensus 28 ~~~~rvaIistGdEl-~~G~----~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGt-s~ 101 (185)
T 3rfq_A 28 LVVGRALVVVVDDRT-AHGD----EDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGT-GV 101 (185)
T ss_dssp -CCEEEEEEEECHHH-HTTC----CCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCC-SS
T ss_pred CCCCEEEEEEECccc-CCCC----cCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCC-CC
Confidence 357899999865331 0111 12222334578889999987655433 334443 334 468999999997 56
Q ss_pred ccCCc
Q psy14047 78 YADDG 82 (350)
Q Consensus 78 ~~~~~ 82 (350)
.++|+
T Consensus 102 g~~D~ 106 (185)
T 3rfq_A 102 TPRDV 106 (185)
T ss_dssp STTCC
T ss_pred CCccc
Confidence 65443
No 75
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=79.37 E-value=6.8 Score=32.28 Aligned_cols=71 Identities=15% Similarity=0.081 Sum_probs=42.8
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCC-CHHHH----HHhhc--ccceEEcCCCCcc
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGN-PEAYY----RKILG--QVNGVLIPGGGAS 76 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~-~~~~~----~~~l~--~~dGli~~GG~~d 76 (350)
..+|.++|.+.-.+. +...+--.....++|++.|+.++...... +.+.+ .+.++ ..|-||.+||. .
T Consensus 11 ~~~~rv~Ii~tGdEl------g~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~-g 83 (169)
T 1y5e_A 11 PKEVRCKIVTISDTR------TEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGT-G 83 (169)
T ss_dssp -CCCEEEEEEECSSC------CTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCC-S
T ss_pred ccCCEEEEEEEcCcc------CeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCC-C
Confidence 457899999865442 11122222334577888999887554433 33343 44456 78999999987 4
Q ss_pred cccCC
Q psy14047 77 FYADD 81 (350)
Q Consensus 77 v~~~~ 81 (350)
+.++|
T Consensus 84 ~g~~D 88 (169)
T 1y5e_A 84 ITKRD 88 (169)
T ss_dssp SSTTC
T ss_pred CCCCC
Confidence 55444
No 76
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=79.32 E-value=2.4 Score=36.16 Aligned_cols=73 Identities=11% Similarity=0.032 Sum_probs=39.6
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHcCCe--EEEEec-CCCHHHH----HHhhc--ccceEEcCCC
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEASGAR--VAPIFI-GNPEAYY----RKILG--QVNGVLIPGG 73 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~G~~--~v~i~~-~~~~~~~----~~~l~--~~dGli~~GG 73 (350)
|++|.++|.+.-... ..+. .+--.....++|++.|+. ++.... ..+.+.+ .+.++ ..|-||.+||
T Consensus 1 ~~~~rv~IIttGdEl-----~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGG 75 (195)
T 1di6_A 1 MATLRIGLVSISDRA-----SSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGG 75 (195)
T ss_dssp -CCEEEEEEEEECC------------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CCCCEEEEEEECCCC-----CCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 457899998865432 1222 222233445788888876 332222 2233343 33445 5889999998
Q ss_pred CcccccCCc
Q psy14047 74 GASFYADDG 82 (350)
Q Consensus 74 ~~dv~~~~~ 82 (350)
. .+.++|.
T Consensus 76 t-g~g~~D~ 83 (195)
T 1di6_A 76 T-GPARRDV 83 (195)
T ss_dssp C-SSSTTCC
T ss_pred C-CCCCCcc
Confidence 7 5665554
No 77
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=78.87 E-value=6.9 Score=32.37 Aligned_cols=71 Identities=21% Similarity=0.150 Sum_probs=42.4
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecC-CCHHHHH----Hhhcc--cceEEcCCCCcc
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIG-NPEAYYR----KILGQ--VNGVLIPGGGAS 76 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~-~~~~~~~----~~l~~--~dGli~~GG~~d 76 (350)
..+|.++|.+.-.+. +...+--.....+.|++.|+.++..... .+.+.+. +.++. .|-||.+||. .
T Consensus 8 ~~~~~v~Ii~tGdE~------g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~-g 80 (172)
T 1mkz_A 8 FIPTRIAILTVSNRR------GEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGT-G 80 (172)
T ss_dssp CCCCEEEEEEECSSC------CGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCC-S
T ss_pred CCCCEEEEEEEeCCC------CcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCC-C
Confidence 456899999865431 1112222334457888899988755443 3334443 34443 8999999987 4
Q ss_pred cccCC
Q psy14047 77 FYADD 81 (350)
Q Consensus 77 v~~~~ 81 (350)
+.++|
T Consensus 81 ~~~~D 85 (172)
T 1mkz_A 81 LTEGD 85 (172)
T ss_dssp SSTTC
T ss_pred CCCCC
Confidence 55444
No 78
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=78.57 E-value=4.1 Score=34.03 Aligned_cols=76 Identities=11% Similarity=0.095 Sum_probs=43.0
Q ss_pred CCCCEEEEEccCCCCCCCCCCC-Cc-ccchhHHHHHHHHHcCCeEEEEecC-CCHHHHH----Hhhcc--cceEEcCCCC
Q psy14047 4 TERPIIGILTQEPCLGVDKHFA-DF-KSYIPASYVKAVEASGARVAPIFIG-NPEAYYR----KILGQ--VNGVLIPGGG 74 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~-~~-~~~i~~~yv~~l~~~G~~~v~i~~~-~~~~~~~----~~l~~--~dGli~~GG~ 74 (350)
..+|.+||.+.-... ..+-.. +. .+--......+|+++|+.++..... .+.+.+. +.++. .|-||.+||.
T Consensus 13 ~~~~rv~IittGde~-~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~ 91 (178)
T 2pjk_A 13 PKSLNFYVITISTSR-YEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp CCCCEEEEEEECHHH-HHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred CCCCEEEEEEeCccc-ccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 356899999865311 000001 11 2222334457888999998765443 3344443 34455 8999999987
Q ss_pred cccccCC
Q psy14047 75 ASFYADD 81 (350)
Q Consensus 75 ~dv~~~~ 81 (350)
.+.++|
T Consensus 92 -s~g~~D 97 (178)
T 2pjk_A 92 -GYSPTD 97 (178)
T ss_dssp -SSSTTC
T ss_pred -CCCCCc
Confidence 455444
No 79
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=78.22 E-value=3.4 Score=34.44 Aligned_cols=71 Identities=17% Similarity=0.021 Sum_probs=41.9
Q ss_pred CCCEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHcCCeEEEEecCC-CHHHH----HHhhcccceEEcCCCCcccc
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEASGARVAPIFIGN-PEAYY----RKILGQVNGVLIPGGGASFY 78 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~-~~~~~----~~~l~~~dGli~~GG~~dv~ 78 (350)
++|.++|.+.-.+. ..+. .+--.....++|++.|+.+..+.... +.+.+ .+.++..|-|+.+||- .+.
T Consensus 2 ~~~~v~IistGdEl-----l~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~-g~~ 75 (172)
T 3kbq_A 2 NAKNASVITVGNEI-----LKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGL-GPT 75 (172)
T ss_dssp --CEEEEEEECHHH-----HTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCC-SSS
T ss_pred CCCEEEEEEEcccc-----cCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCC-cCC
Confidence 45788888754321 1122 22233445578889999987665433 33444 3445678999999997 454
Q ss_pred cCC
Q psy14047 79 ADD 81 (350)
Q Consensus 79 ~~~ 81 (350)
++|
T Consensus 76 ~~D 78 (172)
T 3kbq_A 76 FDD 78 (172)
T ss_dssp TTC
T ss_pred ccc
Confidence 433
No 80
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=72.15 E-value=7.8 Score=36.92 Aligned_cols=78 Identities=14% Similarity=0.030 Sum_probs=45.1
Q ss_pred CCCCEEEEEccCCCCC-CCCCC-CCc-ccchhHHHHHHHHHcCCeEEEEecCC-CHHHH----HHhhcccceEEcCCCCc
Q psy14047 4 TERPIIGILTQEPCLG-VDKHF-ADF-KSYIPASYVKAVEASGARVAPIFIGN-PEAYY----RKILGQVNGVLIPGGGA 75 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~-~~~~~-~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~-~~~~~----~~~l~~~dGli~~GG~~ 75 (350)
..+|.|||.+.-.+.- ..... .+. .+--.......|+++|+.++...... +.+.+ .+.++..|-||.+||.
T Consensus 175 ~~~~rv~iistGdEl~~~g~~~~~G~i~dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~al~~a~~~~DlvittGG~- 253 (411)
T 1g8l_A 175 IRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGV- 253 (411)
T ss_dssp ECCCEEEEEEECTTEECTTSCCCSSCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEECSSS-
T ss_pred cCCCEEEEEEcCccccCCCCCCCCCcEEcCchHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhcCCEEEECCCC-
Confidence 3679999998644320 00100 111 33333445678888999987655433 33444 3345678999999987
Q ss_pred ccccCCc
Q psy14047 76 SFYADDG 82 (350)
Q Consensus 76 dv~~~~~ 82 (350)
.+.++|+
T Consensus 254 s~g~~D~ 260 (411)
T 1g8l_A 254 SVGEADY 260 (411)
T ss_dssp CSSSCSH
T ss_pred CCCCccc
Confidence 5554443
No 81
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=70.63 E-value=5.6 Score=33.54 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=40.9
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHH---cCCeEEEEecC-CCHHHHH----Hhhc--ccceEEcCC
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEA---SGARVAPIFIG-NPEAYYR----KILG--QVNGVLIPG 72 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~---~G~~~v~i~~~-~~~~~~~----~~l~--~~dGli~~G 72 (350)
.++|.++|.+.-.+. ..+. .+--......+|++ .|+.++..... .+.+.+. +.++ ..|-||.+|
T Consensus 12 ~~~~rv~IistGdEl-----~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIttG 86 (189)
T 1jlj_A 12 DHQIRVGVLTVSDSC-----FRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTG 86 (189)
T ss_dssp -CCCEEEEEEECHHH-----HTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred cCCCEEEEEEECCcc-----CCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEcC
Confidence 457899999865331 1111 11122233456666 79988754443 3334443 3444 689999999
Q ss_pred CCcccccCCc
Q psy14047 73 GGASFYADDG 82 (350)
Q Consensus 73 G~~dv~~~~~ 82 (350)
|. .+.++|+
T Consensus 87 Gt-g~g~~D~ 95 (189)
T 1jlj_A 87 GT-GFAPRDV 95 (189)
T ss_dssp CC-SSSTTCC
T ss_pred CC-CCCCccc
Confidence 97 4555443
No 82
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=68.13 E-value=18 Score=32.59 Aligned_cols=63 Identities=8% Similarity=0.074 Sum_probs=41.6
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHH----HHHHhhc---ccceEEcCC
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEA----YYRKILG---QVNGVLIPG 72 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~----~~~~~l~---~~dGli~~G 72 (350)
+.++.||+...... + ..++.-+.....+++++.|..++......+.+ .++.++. ++||||+.+
T Consensus 1 ~~~~~Ig~i~p~~~---~---~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~ 70 (350)
T 3h75_A 1 MSLTSVVFLNPGNS---T---ETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN 70 (350)
T ss_dssp --CCEEEEEECSCT---T---CHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC
T ss_pred CCCCEEEEECCCCC---C---ChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 45789999986432 1 12356667777888888999988877655543 3444554 788888875
No 83
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=67.51 E-value=9.9 Score=36.09 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=42.2
Q ss_pred CCCCEEEEEccCCCCC-CCCCC-CCc-ccchhHHHHHHHHHcCCeEEEEecCCC-HHHH----HHhhcccceEEcCCCCc
Q psy14047 4 TERPIIGILTQEPCLG-VDKHF-ADF-KSYIPASYVKAVEASGARVAPIFIGNP-EAYY----RKILGQVNGVLIPGGGA 75 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~-~~~~~-~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~-~~~~----~~~l~~~dGli~~GG~~ 75 (350)
..+|.|||.+.-.+.- ..+.. .+. .+--.......|+++|+.++.+....+ .+.+ .+.++..|-||.+||.
T Consensus 178 ~~~prv~IistGdEl~~~g~~~~~G~i~DsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~- 256 (402)
T 1uz5_A 178 FRKPKVAVISTGNEIVPPGNELKPGQIYDINGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGA- 256 (402)
T ss_dssp ECCCEEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC-
T ss_pred cCCCEEEEEEcCccccCCCCCCCCCcEEcchHHHHHHHHHhCCCeEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEcCCC-
Confidence 3679999998643320 00100 122 233334456778889999876554433 3443 3445678999999987
Q ss_pred ccccCC
Q psy14047 76 SFYADD 81 (350)
Q Consensus 76 dv~~~~ 81 (350)
.+.++|
T Consensus 257 s~g~~D 262 (402)
T 1uz5_A 257 SGGTKD 262 (402)
T ss_dssp -----C
T ss_pred CCCCcc
Confidence 455444
No 84
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=64.32 E-value=9.4 Score=36.42 Aligned_cols=77 Identities=10% Similarity=0.176 Sum_probs=44.1
Q ss_pred CCCCEEEEEccCCCCC-CCCCC-CCc-ccchhHHHHHHHHHcCCeEEEEecCCC-HHHH----HHhhcccceEEcCCCCc
Q psy14047 4 TERPIIGILTQEPCLG-VDKHF-ADF-KSYIPASYVKAVEASGARVAPIFIGNP-EAYY----RKILGQVNGVLIPGGGA 75 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~-~~~~~-~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~-~~~~----~~~l~~~dGli~~GG~~ 75 (350)
..+|.|||.+.-.+.- ..... .+. .+--.......|+++|+.++.+....+ .+.+ .+.++..|-||.+||.
T Consensus 179 ~~~prv~IistGdEl~~~g~~~~~G~i~dsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~- 257 (419)
T 2fts_A 179 NKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGV- 257 (419)
T ss_dssp ECCCCEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHHCSEEEEESCC-
T ss_pred cCCCEEEEEEechhccCCCCCCCCCcEecCchHHHHHHHHHCCCEEEEEeecCCCHHHHHHHHHHHHhcCCEEEEcCCC-
Confidence 4679999998643320 01111 111 222233456778889999876555433 3443 3445668999999987
Q ss_pred ccccCC
Q psy14047 76 SFYADD 81 (350)
Q Consensus 76 dv~~~~ 81 (350)
.+.++|
T Consensus 258 s~g~~D 263 (419)
T 2fts_A 258 SMGEKD 263 (419)
T ss_dssp SSSCCH
T ss_pred cCCCcc
Confidence 455433
No 85
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=64.16 E-value=9.4 Score=31.73 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=38.0
Q ss_pred CCCEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHH---HcCCeEEEEecCCCHHHHH----Hhhc--ccceEEcCCCC
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVE---ASGARVAPIFIGNPEAYYR----KILG--QVNGVLIPGGG 74 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~---~~G~~~v~i~~~~~~~~~~----~~l~--~~dGli~~GG~ 74 (350)
.+|.++|.+.-... ..+. .+--.....++|+ +.|+.+.......+.+.+. +.++ ..|-||.+||.
T Consensus 4 ~~~rv~IistGdE~-----~~G~i~Dsn~~~l~~~l~~l~~~G~~v~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~ 78 (178)
T 2pbq_A 4 KKAVIGVVTISDRA-----SKGIYEDISGKAIIDYLKDVIITPFEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGGT 78 (178)
T ss_dssp -CCEEEEEEECHHH-----HHTSSCCHHHHHHHHHHHHHBCSCCEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CCCEEEEEEeCCcC-----CCCCeecchHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 56899999864321 1111 1111122334455 7899873333334444443 3444 68999999987
Q ss_pred cccccCC
Q psy14047 75 ASFYADD 81 (350)
Q Consensus 75 ~dv~~~~ 81 (350)
.+.++|
T Consensus 79 -g~g~~D 84 (178)
T 2pbq_A 79 -GPAPRD 84 (178)
T ss_dssp -SSSTTC
T ss_pred -CCCCCC
Confidence 455444
No 86
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=63.72 E-value=9 Score=36.29 Aligned_cols=78 Identities=21% Similarity=0.135 Sum_probs=39.9
Q ss_pred CCCCEEEEEccCCCCC-C-CCC-C-CCc-ccchhHHHHHHHHHcCCeEEEEecCCC-HHH----HHHhhcccceEEcCCC
Q psy14047 4 TERPIIGILTQEPCLG-V-DKH-F-ADF-KSYIPASYVKAVEASGARVAPIFIGNP-EAY----YRKILGQVNGVLIPGG 73 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~-~-~~~-~-~~~-~~~i~~~yv~~l~~~G~~~v~i~~~~~-~~~----~~~~l~~~dGli~~GG 73 (350)
..+|.|||.+.-.+.- . .+. . .+. .+--.......|++.|+.++.+....+ .+. +.+.++..|-||.+||
T Consensus 180 ~~~prv~IistGdEl~~~~g~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlvittGG 259 (396)
T 1wu2_A 180 KVKPKVGIIITGSELIEEPSEEGFKEGKIVETNSIMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGG 259 (396)
T ss_dssp ECCCEEEEEEECTTEESSCCHHHHHTTCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHCSEEEECC--
T ss_pred cCCCEEEEEEcCcccccCCCCcccCCCcEecchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEeCC
Confidence 4679999998543320 0 000 0 112 222233456778889999876554433 333 4445667899999998
Q ss_pred CcccccCCc
Q psy14047 74 GASFYADDG 82 (350)
Q Consensus 74 ~~dv~~~~~ 82 (350)
. .+.++|+
T Consensus 260 ~-s~g~~D~ 267 (396)
T 1wu2_A 260 S-AFGDKDY 267 (396)
T ss_dssp -------CC
T ss_pred C-CCChhhH
Confidence 7 5655554
No 87
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=63.46 E-value=42 Score=29.42 Aligned_cols=62 Identities=18% Similarity=0.110 Sum_probs=41.3
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCCC
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG~ 74 (350)
+.+|||...... ..++.-+.....+++++.|..++......+.+. ++.++ .++||||+.+..
T Consensus 2 ~~~Igvi~~~~~-------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 68 (313)
T 3m9w_A 2 EVKIGMAIDDLR-------LERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYN 68 (313)
T ss_dssp -CEEEEEESCCS-------SSTTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CcEEEEEeCCCC-------ChHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 568999875432 123555677788889999999888777655432 23322 468999988754
No 88
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=63.28 E-value=4.2 Score=33.37 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCeEEEEecC-CCHHHH----HHhhc--ccceEEcCCCCcccccCCc
Q psy14047 34 SYVKAVEASGARVAPIFIG-NPEAYY----RKILG--QVNGVLIPGGGASFYADDG 82 (350)
Q Consensus 34 ~yv~~l~~~G~~~v~i~~~-~~~~~~----~~~l~--~~dGli~~GG~~dv~~~~~ 82 (350)
...++|++.|+.++..... .+.+.+ .+.++ ..|-||.+||. .+.++|+
T Consensus 25 ~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~-g~g~~D~ 79 (164)
T 2is8_A 25 AIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGT-GLAPRDR 79 (164)
T ss_dssp HHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCC-SSSTTCC
T ss_pred HHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCC-CCCCCCC
Confidence 3457788899988755443 333444 33445 68999999997 4554443
No 89
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=61.05 E-value=56 Score=28.75 Aligned_cols=63 Identities=11% Similarity=0.110 Sum_probs=41.6
Q ss_pred CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCCC
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG~ 74 (350)
++.+|||...... ..++.-+....-+++++.|..++......+.+. ++.++ .++|||++.+..
T Consensus 2 ~~~~Igvi~~~~~-------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~ 69 (330)
T 3uug_A 2 DKGSVGIAMPTKS-------SARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASID 69 (330)
T ss_dssp CCCEEEEEECCSS-------STHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred CCcEEEEEeCCCc-------chHHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4678999986532 223566777888889999999887775555432 23322 468888887543
No 90
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=60.99 E-value=5.4 Score=32.81 Aligned_cols=71 Identities=7% Similarity=-0.011 Sum_probs=37.4
Q ss_pred CCCEEEEEccCCCCCCCCCCCCc-ccchhHHHHHH----HHHcCCeEEEEecCC-CHHHH----HHhhc-ccceEEcCCC
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADF-KSYIPASYVKA----VEASGARVAPIFIGN-PEAYY----RKILG-QVNGVLIPGG 73 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~----l~~~G~~~v~i~~~~-~~~~~----~~~l~-~~dGli~~GG 73 (350)
+.|.++|.+.-... ..+. .+--.....++ |++.|+.++...... +.+.+ .+.++ ..|-|+.+||
T Consensus 4 m~~~v~Ii~~GdEl-----~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVittGG 78 (167)
T 2g2c_A 4 MHIKSAIIVVSDRI-----STGTRENKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAGG 78 (167)
T ss_dssp CEEEEEEEEECHHH-----HHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred CccEEEEEEECCcc-----cCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCC
Confidence 45788888754321 1111 11112233456 788999886554433 33443 34455 4899999998
Q ss_pred CcccccCC
Q psy14047 74 GASFYADD 81 (350)
Q Consensus 74 ~~dv~~~~ 81 (350)
- .+.++|
T Consensus 79 ~-g~~~~D 85 (167)
T 2g2c_A 79 T-GIRAKN 85 (167)
T ss_dssp C-SSSTTC
T ss_pred C-CCCCCc
Confidence 7 455444
No 91
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=59.97 E-value=41 Score=29.02 Aligned_cols=62 Identities=13% Similarity=0.150 Sum_probs=39.7
Q ss_pred CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCC
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG 73 (350)
+..+||+...... ...+.-+.....+++++.|..++......+.+. ++.++ .++||||+.+.
T Consensus 7 ~~~~Ig~i~~~~~-------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (293)
T 3l6u_A 7 KRNIVGFTIVNDK-------HEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTL 73 (293)
T ss_dssp --CEEEEEESCSC-------SHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCcEEEEEEecCC-------cHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 4478999985431 122555667777888889999888877655432 22222 46889888654
No 92
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=59.87 E-value=10 Score=29.47 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=15.9
Q ss_pred hHHHHHHHHHcCCeEEEEecCC
Q psy14047 32 PASYVKAVEASGARVAPIFIGN 53 (350)
Q Consensus 32 ~~~yv~~l~~~G~~~v~i~~~~ 53 (350)
....+++|.+.|..+.++....
T Consensus 20 g~~v~~~L~~~g~~V~pVnP~~ 41 (122)
T 3ff4_A 20 AYLAAERLKSHGHEFIPVGRKK 41 (122)
T ss_dssp HHHHHHHHHHHTCCEEEESSSC
T ss_pred HHHHHHHHHHCCCeEEEECCCC
Confidence 3555688888899877776643
No 93
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=57.78 E-value=17 Score=29.74 Aligned_cols=72 Identities=21% Similarity=0.218 Sum_probs=38.8
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCc-ccchhHHHHHHHHHc-----CCeEEEEecC-CCHHHHHH----hhc--ccceEEc
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADF-KSYIPASYVKAVEAS-----GARVAPIFIG-NPEAYYRK----ILG--QVNGVLI 70 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~-~~~i~~~yv~~l~~~-----G~~~v~i~~~-~~~~~~~~----~l~--~~dGli~ 70 (350)
..+|.++|.+.-... ..+. .+--.....+.+++. |+.++.+... .+.+.+.+ .++ ..|-||.
T Consensus 3 ~~~~rv~IistGde~-----~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVit 77 (167)
T 1uuy_A 3 GPEYKVAILTVSDTV-----SAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILT 77 (167)
T ss_dssp CCSEEEEEEEECHHH-----HTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCcEEEEEEECCcc-----cCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 467899999853221 1111 111111223566666 8887755443 33444433 332 6899999
Q ss_pred CCCCcccccCC
Q psy14047 71 PGGGASFYADD 81 (350)
Q Consensus 71 ~GG~~dv~~~~ 81 (350)
+||. .+.++|
T Consensus 78 tGG~-g~g~~D 87 (167)
T 1uuy_A 78 LGGT-GFTPRD 87 (167)
T ss_dssp ESCC-SSSTTC
T ss_pred CCCC-CCCCCC
Confidence 9987 455443
No 94
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=52.15 E-value=71 Score=27.40 Aligned_cols=63 Identities=14% Similarity=0.210 Sum_probs=41.3
Q ss_pred CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCCC
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG~ 74 (350)
+..+||+...... ...+.-+.....+++++.|..++......+.+. ++.++ .++||||+.+..
T Consensus 4 ~~~~Ig~i~~~~~-------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 71 (291)
T 3l49_A 4 EGKTIGITAIGTD-------HDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGN 71 (291)
T ss_dssp TTCEEEEEESCCS-------SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSC
T ss_pred CCcEEEEEeCCCC-------ChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3468999975431 112445667778888899999888876665432 23332 468999987653
No 95
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=51.20 E-value=72 Score=27.02 Aligned_cols=60 Identities=10% Similarity=0.085 Sum_probs=37.5
Q ss_pred CEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecC--CCHH----HHHHhh-cc-cceEEcCCC
Q psy14047 7 PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIG--NPEA----YYRKIL-GQ-VNGVLIPGG 73 (350)
Q Consensus 7 p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~--~~~~----~~~~~l-~~-~dGli~~GG 73 (350)
|.||+...... ...+.-+.....+++++.|..+...... .+.+ .++.++ .+ +|||++.+.
T Consensus 1 ~~Ig~i~~~~~-------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~ 68 (276)
T 3ksm_A 1 PKLLLVLKGDS-------NAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPN 68 (276)
T ss_dssp CEEEEECSCSS-------STHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCS
T ss_pred CeEEEEeCCCC-------ChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 57899875432 1235556677788888899988777632 3332 233333 35 888888764
No 96
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=50.65 E-value=16 Score=33.14 Aligned_cols=36 Identities=3% Similarity=-0.083 Sum_probs=23.8
Q ss_pred EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEec
Q psy14047 8 IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFI 51 (350)
Q Consensus 8 ~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~ 51 (350)
.|+|...+.. + ...-.....+++|++.|..++....
T Consensus 6 ki~iI~n~~~----~----~~~~~~~~l~~~L~~~g~~v~~~~~ 41 (307)
T 1u0t_A 6 SVLLVVHTGR----D----EATETARRVEKVLGDNKIALRVLSA 41 (307)
T ss_dssp EEEEEESSSG----G----GGSHHHHHHHHHHHTTTCEEEEEC-
T ss_pred EEEEEEeCCC----H----HHHHHHHHHHHHHHHCCCEEEEecc
Confidence 4888888742 1 1122457788999999998765543
No 97
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=49.66 E-value=61 Score=28.14 Aligned_cols=62 Identities=13% Similarity=0.036 Sum_probs=38.1
Q ss_pred CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecC--CCHH----HHHHhh-cccceEEcCCC
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIG--NPEA----YYRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~--~~~~----~~~~~l-~~~dGli~~GG 73 (350)
.+-.||+...... ...+.-+.....+++++.|..++..... .+.+ .++.++ .++|||++.+.
T Consensus 2 ~~~~Igvi~~~~~-------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 70 (297)
T 3rot_A 2 VRDKYYLITHGSQ-------DPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIP 70 (297)
T ss_dssp -CCEEEEECSCCC-------SHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred ceEEEEEEecCCC-------CchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4568999875431 1235566777788888899988776644 2332 222222 46788887654
No 98
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=46.61 E-value=16 Score=33.41 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=35.4
Q ss_pred CCC-EEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCC--------CHHHHHHh--------hcccce
Q psy14047 5 ERP-IIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGN--------PEAYYRKI--------LGQVNG 67 (350)
Q Consensus 5 ~~p-~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~--------~~~~~~~~--------l~~~dG 67 (350)
.|| .|||+..... . .--..-+.+.|.+.+..+-...+.. +.+.+.+. .+.+||
T Consensus 45 irplkI~ILnlmp~---------k-~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~Dg 114 (312)
T 2h2w_A 45 IRPLEILILNLMPD---------K-IKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDG 114 (312)
T ss_dssp CCCEEEEEECCCSS---------H-HHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEE
T ss_pred CCCceEEEEeCCCC---------c-CchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCE
Confidence 356 4999986432 1 1123556677777665544322221 12223221 366899
Q ss_pred EEcCCCCccc
Q psy14047 68 VLIPGGGASF 77 (350)
Q Consensus 68 li~~GG~~dv 77 (350)
+|+|||+...
T Consensus 115 lIITGsP~~~ 124 (312)
T 2h2w_A 115 FIITGAPVEL 124 (312)
T ss_dssp EEECCCSCTT
T ss_pred EEECCCCCCC
Confidence 9999999654
No 99
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=45.97 E-value=1e+02 Score=26.39 Aligned_cols=61 Identities=10% Similarity=0.105 Sum_probs=37.4
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCC
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG 73 (350)
+.+||+...... ...+.-+.....+++++.|..++......+.+. ++.++ .++||||+.+.
T Consensus 2 ~~~Ig~i~~~~~-------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (290)
T 2fn9_A 2 KGKMAIVISTLN-------NPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPT 67 (290)
T ss_dssp -CEEEEEESCSS-------SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred ceEEEEEeCCCC-------ChHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 357999874321 122455667777888889998877665544322 23322 46888888754
No 100
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=45.50 E-value=1e+02 Score=26.62 Aligned_cols=62 Identities=11% Similarity=0.018 Sum_probs=38.2
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEe-cCCCHHH----HHHhh-cccceEEcCCCC
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIF-IGNPEAY----YRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~-~~~~~~~----~~~~l-~~~dGli~~GG~ 74 (350)
...||+...... ...+.-+.....+.+++.|..++.+. ...+.+. ++.++ .++||||+.+..
T Consensus 4 ~~~I~~i~~~~~-------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 71 (305)
T 3g1w_A 4 NETYMMITFQSG-------MDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAID 71 (305)
T ss_dssp -CEEEEEESSTT-------STHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSS
T ss_pred CceEEEEEccCC-------ChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 467888875432 22355666777888888999988743 3334322 22222 468999987654
No 101
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=45.32 E-value=28 Score=28.53 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=29.9
Q ss_pred HHHHHHHcCCeEEEEecCCC-HHHHHHhh------cccceEEcCCCCcccccCC
Q psy14047 35 YVKAVEASGARVAPIFIGNP-EAYYRKIL------GQVNGVLIPGGGASFYADD 81 (350)
Q Consensus 35 yv~~l~~~G~~~v~i~~~~~-~~~~~~~l------~~~dGli~~GG~~dv~~~~ 81 (350)
..++|++.|+.++......| .+.+.+.+ ...|-|+.+||- .+.++|
T Consensus 45 L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~-g~~~~D 97 (178)
T 3iwt_A 45 IKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGT-GYSPTD 97 (178)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCC-SSSTTC
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCc-ccCCCC
Confidence 45889999999876655443 34444322 357889999987 444333
No 102
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=45.15 E-value=2.6 Score=25.84 Aligned_cols=17 Identities=24% Similarity=0.583 Sum_probs=12.8
Q ss_pred cEEEehHHHHHHHHHhc
Q psy14047 158 PIMGICLGFQLLLYTSN 174 (350)
Q Consensus 158 PIlGIC~G~QlLa~a~G 174 (350)
-.-|.|+|.|+|..+-|
T Consensus 31 gtagacfgaqimvaakg 47 (48)
T 1ehs_A 31 GTAGACFGAQIMVAAKG 47 (48)
T ss_dssp SSCCTTTTTHHHHTTTT
T ss_pred CccccccchhHhhhccc
Confidence 34688999999986543
No 103
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=44.52 E-value=1e+02 Score=26.23 Aligned_cols=61 Identities=13% Similarity=0.080 Sum_probs=37.5
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCC
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG 73 (350)
+++||+...... ..++.-+....-+.+++.|..++......+.+. ++.++ .++|||++.+.
T Consensus 1 ~~~Igvi~~~~~-------~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (271)
T 2dri_A 1 KDTIALVVSTLN-------NPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 66 (271)
T ss_dssp CCEEEEEESCSS-------SHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCS
T ss_pred CcEEEEEecCCC-------CHHHHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 468999874321 122555667777788888988877654444322 23333 36899988653
No 104
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=41.27 E-value=78 Score=24.57 Aligned_cols=27 Identities=11% Similarity=0.012 Sum_probs=17.2
Q ss_pred HHHHHHHHhhCCCCccEEEehHHHHHHHHHhc
Q psy14047 143 IYKIAKEFNENRDYFPIMGICLGFQLLLYTSN 174 (350)
Q Consensus 143 l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~G 174 (350)
+++.+.+. | +|||-+=...--.+..+.
T Consensus 90 i~~~A~~~---~--ipvl~t~~~T~~~~~~l~ 116 (139)
T 2ioj_A 90 VLTKAEER---G--VPVILTGHDTLTAVSRLE 116 (139)
T ss_dssp HHHHHHHH---T--CCEEECSSCHHHHHHHHH
T ss_pred HHHHHHHC---C--CeEEEECCCHHHHHHHHH
Confidence 45556654 3 999988776655555433
No 105
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=39.64 E-value=88 Score=26.78 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=42.1
Q ss_pred CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCCC
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG~ 74 (350)
.+.+||+...... ...+.-+....-+.+++.|..++......+.+. ++.++ .++||||+.+..
T Consensus 14 ~~~~Igvi~~~~~-------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 81 (298)
T 3tb6_A 14 SNKTIGVLTTYIS-------DYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTK 81 (298)
T ss_dssp -CCEEEEEESCSS-------STTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSS
T ss_pred cCceEEEEeCCCC-------chHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeccc
Confidence 3478999875432 123555667778888899999888877655432 22222 479999998754
No 106
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=38.31 E-value=69 Score=27.78 Aligned_cols=41 Identities=2% Similarity=-0.104 Sum_probs=24.5
Q ss_pred CEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecC
Q psy14047 7 PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIG 52 (350)
Q Consensus 7 p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~ 52 (350)
+.|+|+..-. +.+++....=...-++.|+++|..+..+...
T Consensus 24 kkV~ill~~~-----~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~ 64 (242)
T 3l3b_A 24 LNSAVILAGC-----GHMDGSEIREAVLVMLELDRHNVNFKCFAPN 64 (242)
T ss_dssp CEEEEECCCS-----STTTSCCHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CEEEEEEecC-----CCCCCeeHHHHHHHHHHHHHCCCEEEEEecC
Confidence 5678876421 1223332222344567899999999887764
No 107
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=38.25 E-value=32 Score=30.58 Aligned_cols=36 Identities=14% Similarity=-0.009 Sum_probs=21.7
Q ss_pred CEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEe
Q psy14047 7 PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIF 50 (350)
Q Consensus 7 p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~ 50 (350)
..|+|...+.. + ...-+....++++++.|..+...+
T Consensus 6 kki~ii~np~~----~----~~~~~~~~i~~~l~~~g~~v~~~~ 41 (292)
T 2an1_A 6 KCIGIVGHPRH----P----TALTTHEMLYRWLCDQGYEVIVEQ 41 (292)
T ss_dssp CEEEEECC---------------CHHHHHHHHHHHTTCEEEEEH
T ss_pred cEEEEEEcCCC----H----HHHHHHHHHHHHHHHCCCEEEEec
Confidence 46888887742 1 112245678899999999876543
No 108
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=38.14 E-value=1.1e+02 Score=26.77 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=36.3
Q ss_pred CCCCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHc-CCeEEEEecCCCHH----HHHHhh-cccceEEcCCCC
Q psy14047 3 ATERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEAS-GARVAPIFIGNPEA----YYRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 3 ~~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~-G~~~v~i~~~~~~~----~~~~~l-~~~dGli~~GG~ 74 (350)
.....+||++... . ...+.-+.....+.+++. |..++......+.+ .++.++ .++||||+.+..
T Consensus 3 ~~~~~~Igvi~~~-~-------~~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 72 (325)
T 2x7x_A 3 DTPHFRIGVAQCS-D-------DSWRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANE 72 (325)
T ss_dssp ---CCEEEEEESC-C-------SHHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCCCeEEEEEecC-C-------CHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3445789998743 1 112333455556666677 88877666544432 233333 578999987643
No 109
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=37.84 E-value=55 Score=33.17 Aligned_cols=59 Identities=17% Similarity=0.203 Sum_probs=38.2
Q ss_pred CEEEEEccCCCCCCCCCCCCc-----------ccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCC
Q psy14047 7 PIIGILTQEPCLGVDKHFADF-----------KSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPG 72 (350)
Q Consensus 7 p~Igi~~~~~~~~~~~~~~~~-----------~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~G 72 (350)
..|||+..+... +.|... .+| ..++++|..++..+..|+.+.-.+ ...|+.+|.||.+|
T Consensus 439 ~kVAVLnsWGkl---RSW~~~~vaHak~~kq~ysy--~GilEALsg~~~dV~FIsfdDI~e--~e~L~d~DVIIn~G 508 (759)
T 2zuv_A 439 LNVAILNSWGKM---RSWMAFTVAHALPNKQTYSY--YGILESLSGMRVNVRFISFDDVLA--HGIDSDIDVIINGG 508 (759)
T ss_dssp SEEEEEESSGGG---GTTTTTCSSTTCCCTTTHHH--HHHHHHHHTSSSEEEEEEHHHHHH--HCCCTTCCEEEEEE
T ss_pred ceEEEEecCCCC---cccccccccccccccccccH--HHHHHHHhcCCCceEEecHHHhcc--ccccccCCEEEecC
Confidence 469999877542 222211 244 448899999999999999742111 13577888888666
No 110
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=37.36 E-value=87 Score=27.10 Aligned_cols=62 Identities=18% Similarity=0.145 Sum_probs=41.2
Q ss_pred CCEEEEEccCCCCCCCCCCCCccc-chhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCCC
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKS-YIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~-~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG~ 74 (350)
..+||+...... ...+. -+.....+.+++.|..++......+.+. ++.+. .++||||+.+..
T Consensus 13 s~~Igvi~~~~~-------~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 80 (301)
T 3miz_A 13 SNTFGIITDYVS-------TTPYSVDIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMY 80 (301)
T ss_dssp CCEEEEEESSTT-------TCCSCHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEE
T ss_pred CCEEEEEeCCCc-------CcccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecCC
Confidence 468999875432 12244 5667788889999999888776655432 22222 479999988643
No 111
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=37.11 E-value=22 Score=27.21 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=23.2
Q ss_pred HHhccCCEEEe-CCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEe
Q psy14047 113 KILGQVNGVLI-PGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGI 162 (350)
Q Consensus 113 ~~l~~~dgvIi-pG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGI 162 (350)
..++.+|.||+ .|..+. .+.|.+. .++.+++ .| +||+||
T Consensus 34 ~~I~~~~~vIvL~G~~t~---~s~wv~~---EI~~A~~---~g--kpIigV 73 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGT---RRDEILG---AVDLARK---SS--KPIITV 73 (111)
T ss_dssp CCSSSCSEEEEEGGGTTT---SHHHHHH---HHHHHTT---TT--CCEEEE
T ss_pred CccccCCEEEEEeCCCcC---CChHHHH---HHHHHHH---cC--CCEEEE
Confidence 35678899998 554332 2445432 2344443 44 999998
No 112
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=37.09 E-value=1.5e+02 Score=25.26 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=36.5
Q ss_pred CEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHH----HHHHhh-cccceEEcCCC
Q psy14047 7 PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEA----YYRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 7 p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~----~~~~~l-~~~dGli~~GG 73 (350)
.+||+...... ...+.-+.....+.+++.|..++......+.+ .++.++ .++||||+.+.
T Consensus 2 ~~Igvi~~~~~-------~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (283)
T 2ioy_A 2 KTIGLVISTLN-------NPFFVTLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPV 66 (283)
T ss_dssp CEEEEEESCSS-------SHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEecCCC-------CHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 47898864321 11255566677778888899887766544432 233333 46899988653
No 113
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=36.82 E-value=1.9e+02 Score=24.77 Aligned_cols=60 Identities=15% Similarity=0.068 Sum_probs=34.9
Q ss_pred CEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCC-eEEEEecCCCHHH----HHHhh-cccceEEcCCC
Q psy14047 7 PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGA-RVAPIFIGNPEAY----YRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 7 p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~-~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG 73 (350)
.+|||...... ...+.-+.....+.+++.|. .++......+.+. ++.++ .++||||+.+.
T Consensus 3 ~~Igvi~~~~~-------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 68 (309)
T 2fvy_A 3 TRIGVTIYKYD-------DNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV 68 (309)
T ss_dssp EEEEEEESCTT-------SHHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred cEEEEEeccCC-------cHHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 57899875321 12255566677778888897 7666555444322 22222 45777777653
No 114
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=36.81 E-value=61 Score=28.31 Aligned_cols=59 Identities=5% Similarity=-0.130 Sum_probs=32.6
Q ss_pred HHHHHHHhhCCCCccEEEehHHH--HHHHHHhcCccccCCccCce--eeeeeceeecCCCCCcccccCCch
Q psy14047 144 YKIAKEFNENRDYFPIMGICLGF--QLLLYTSNNENELRTRCDCF--YENLALEFMPSFRQSLLYSRAPIH 210 (350)
Q Consensus 144 ~~~i~~~~~~g~~~PIlGIC~G~--QlLa~a~Gg~v~~~~~~~~~--~~~~~i~~~~~~~~~~lf~~~~~~ 210 (350)
.+.++++.++| .+++||=.|+ +-....+||... .+.. +....+.. ....+++.++++..
T Consensus 87 ~~al~~~V~~G--gG~vgiH~a~~~~~y~~llGg~f~----~~~~~~~~~~~v~v--~~~~HPit~gl~~~ 149 (252)
T 1t0b_A 87 VERVHRRVLEG--MGLIVLHSGHFSKIFKKLMGTTCN----LKWREADEKERLWV--VAPGHPIVEGIGPY 149 (252)
T ss_dssp HHHHHHHHHTT--CEEEEEGGGGGSHHHHHHHCSCCC----CEEEEEEEEEEEEE--SCTTSGGGTTCCSE
T ss_pred HHHHHHHHHcC--CCEEEEcccCCcHHHHhhhCCccc----CCCccCCceEEEEE--CCCCChhhcCCCCC
Confidence 34566777788 9999996653 334556677521 1111 11112222 23467888887754
No 115
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=36.74 E-value=4.1 Score=33.26 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=26.0
Q ss_pred ccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehHHHHHHHHHhc
Q psy14047 116 GQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN 174 (350)
Q Consensus 116 ~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~G~QlLa~a~G 174 (350)
.++|.||+.||=+.-...-.-+ .+.+.+.+..+.+ ..|+|||+ |-+....|
T Consensus 83 ~~~D~vVllGGLAMPk~~v~~e----~v~~li~ki~~~~--~kiiGvCF--ms~F~kag 133 (157)
T 2r47_A 83 GNVDVLVLLGGLSMPGIGSDIE----DVKKLVEDALEEG--GELMGLCY--MDMFARAG 133 (157)
T ss_dssp CCEEEEEEEGGGGSTTTSCCHH----HHHHHHHHHEEEE--EEEEEEEE--TTHHHHTT
T ss_pred CCCCEEEEeccccCCCCCCCHH----HHHHHHHHhhcCC--CCEEEEEh--HHHHHHcC
Confidence 3778888877633211001111 2344455543333 77999995 44444433
No 116
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=35.93 E-value=1.3e+02 Score=25.81 Aligned_cols=60 Identities=17% Similarity=0.086 Sum_probs=36.4
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCC
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG 73 (350)
..+||+...... ..++.-+....-+++++.|..++..... +.+. ++.++ .++|||++.+.
T Consensus 2 ~~~Ig~i~~~~~-------~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiii~~~ 66 (306)
T 8abp_A 2 NLKLGFLVKQPE-------EPWFQTEWKFADKAGKDLGFEVIKIAVP-DGEKTLNAIDSLAASGAKGFVICTP 66 (306)
T ss_dssp CEEEEEEESCTT-------SHHHHHHHHHHHHHHHHHTEEEEEEECC-SHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred CeEEEEEeCCCC-------chHHHHHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 357999875432 1225566677778888889888766553 3322 22222 45777777653
No 117
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=31.98 E-value=1e+02 Score=26.40 Aligned_cols=63 Identities=10% Similarity=0.173 Sum_probs=42.2
Q ss_pred CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCCC
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG~ 74 (350)
...+||+...... ...+.-+.....+.+++.|..++......+.+. ++.+. .++||||+.+..
T Consensus 7 ~~~~Igvv~~~~~-------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (291)
T 3egc_A 7 RSNVVGLIVSDIE-------NVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSE 74 (291)
T ss_dssp CCCEEEEEESCTT-------SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred CCcEEEEEECCCc-------chHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4468999985421 122555667777888889999888877665432 22222 579999998764
No 118
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=31.02 E-value=1.3e+02 Score=26.57 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=40.0
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCCC
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG~ 74 (350)
..+||+...... ...+.-+....-+.+++.|..++......+.+. ++.++ .++||||+.+..
T Consensus 62 ~~~Igvi~~~~~-------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 128 (339)
T 3h5o_A 62 SRTVLVLIPSLA-------NTVFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLS 128 (339)
T ss_dssp -CEEEEEESCST-------TCTTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCEEEEEeCCCC-------CHHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 357999875432 123455667777888889999887776655432 22222 479999998743
No 119
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=30.83 E-value=91 Score=26.58 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=41.8
Q ss_pred CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCCC
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG~ 74 (350)
+..+||+...... ...+.-+.....+.+++.|..++......+.+. ++.+. .++||||+.+..
T Consensus 6 ~s~~Igvi~~~~~-------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 73 (276)
T 3jy6_A 6 SSKLIAVIVANID-------DYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFS 73 (276)
T ss_dssp CCCEEEEEESCTT-------SHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSC
T ss_pred CCcEEEEEeCCCC-------chHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 3468999985431 122555667777888889999888877665432 22222 479999998754
No 120
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=30.49 E-value=1.8e+02 Score=26.19 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=24.6
Q ss_pred CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcc
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQ 64 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~ 64 (350)
.+|+|+|...... ....|+. ..| ...++.|.+.|..++.+-...+.+..+++.+.
T Consensus 184 ~~~~i~i~pga~~--~~k~wp~-~~~--~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~ 238 (349)
T 3tov_A 184 TDILIGFNIGSAV--PEKRWPA-ERF--AHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQ 238 (349)
T ss_dssp TCCEEEEECCCSS--GGGCCCH-HHH--HHHHHHHHHHTCEEEECCCTTTHHHHHHHHHT
T ss_pred CCCEEEEeCCCCC--ccCCCCH-HHH--HHHHHHHHhCCCeEEEEeCcchHHHHHHHHHh
Confidence 4678888754321 0111111 111 34455665567776654322333333444333
No 121
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=30.00 E-value=1.1e+02 Score=26.20 Aligned_cols=67 Identities=10% Similarity=0.108 Sum_probs=40.9
Q ss_pred CCCEEEEEccCCCCCCCC-CCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCCC
Q psy14047 5 ERPIIGILTQEPCLGVDK-HFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~-~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG~ 74 (350)
...+||+...... .. .....+.-+.....+.+++.|..++......+.+. ++.+. .++||||+.+..
T Consensus 7 ~~~~Igvi~~~~~---~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~ 79 (292)
T 3k4h_A 7 TTKTLGLVMPSSA---SKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSR 79 (292)
T ss_dssp CCCEEEEECSSCH---HHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCB
T ss_pred CCCEEEEEecCCc---cccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 4468999976510 00 01223555667778888899998877665544332 22222 579999997654
No 122
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=29.97 E-value=1.1e+02 Score=26.46 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=40.0
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCCC
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG~ 74 (350)
..+||+...... ...+.-+.....+.+++.|..++......+.+. ++.++ .++||||+.+..
T Consensus 15 s~~Igvi~~~~~-------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 81 (303)
T 3kke_A 15 SGTIGLIVPDVN-------NAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRRE 81 (303)
T ss_dssp --CEEEEESCTT-------STTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCT
T ss_pred CCEEEEEeCCCc-------ChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 357999875432 223555667777888889999888776655332 22222 479999998754
No 123
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=28.99 E-value=37 Score=33.37 Aligned_cols=60 Identities=30% Similarity=0.391 Sum_probs=34.5
Q ss_pred CEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHH----cCCeEEEEecCCCH---HHH--HHhhcccceEEcCCCCcc
Q psy14047 7 PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEA----SGARVAPIFIGNPE---AYY--RKILGQVNGVLIPGGGAS 76 (350)
Q Consensus 7 p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~----~G~~~v~i~~~~~~---~~~--~~~l~~~dGli~~GG~~d 76 (350)
-.||+..-.... . +.| .|.+++|+. .+..+.+.+.+... +.. .+.|+.+|||++|||..+
T Consensus 294 v~IalVGKY~~l------~--DaY--~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpGG~G~ 362 (535)
T 3nva_A 294 INIALVGKYTKL------K--DSY--ISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFGS 362 (535)
T ss_dssp EEEEEEESCTTS------G--GGG--HHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECCCCSS
T ss_pred eEEEEEecCcCC------c--hhH--HHHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECCCCCC
Confidence 357777654321 1 334 344555554 55667666654431 001 235789999999999743
No 124
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=28.96 E-value=1.3e+02 Score=25.21 Aligned_cols=62 Identities=6% Similarity=0.037 Sum_probs=41.2
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCCC
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG~ 74 (350)
..+||+...... ..++.-+.....+.+++.|..++......+.+. ++.++ .++||||+.+..
T Consensus 2 s~~Igvi~~~~~-------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 2 TRTLGFILPDLE-------NPSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp CCEEEEEESCTT-------CHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred ceEEEEEeCCCc-------ChhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 357999875432 122555667777888889999988877665432 23332 479999998654
No 125
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=28.41 E-value=28 Score=30.41 Aligned_cols=18 Identities=28% Similarity=0.601 Sum_probs=15.2
Q ss_pred HHHHhccCCEEEeCCCCC
Q psy14047 111 IEKILGQVNGVLIPGGGA 128 (350)
Q Consensus 111 ~~~~l~~~dgvIipG~g~ 128 (350)
+++.++.+||||++||..
T Consensus 55 ~~~~l~~~DGlil~GG~~ 72 (254)
T 3fij_A 55 AVQAISLVDGLLLTGGQD 72 (254)
T ss_dssp HHHHHHTCSEEEECCCSC
T ss_pred HHHHHhhCCEEEECCCCC
Confidence 566788999999999865
No 126
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=28.13 E-value=1.2e+02 Score=26.38 Aligned_cols=58 Identities=12% Similarity=0.039 Sum_probs=38.1
Q ss_pred CEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCC------------HHHHHHhhcccceEEcC
Q psy14047 7 PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNP------------EAYYRKILGQVNGVLIP 71 (350)
Q Consensus 7 p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~------------~~~~~~~l~~~dGli~~ 71 (350)
.+++|.+.+.. .+...-+...+.+.+++.|..+..+....- ...+.+.+...|||||.
T Consensus 36 kIliI~GS~r~-------~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~ 105 (247)
T 2q62_A 36 RILILYGSLRT-------VSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWV 105 (247)
T ss_dssp EEEEEECCCCS-------SCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEE
T ss_pred eEEEEEccCCC-------CCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEE
Confidence 47777777652 122455667778888888998877766432 23344557778999874
No 127
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=28.10 E-value=2.6e+02 Score=24.13 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=35.4
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEec-CCCHH----HHHHhh-cccceEEcCCC
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFI-GNPEA----YYRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~-~~~~~----~~~~~l-~~~dGli~~GG 73 (350)
+..||+...... . ++.-+.....+++++.|..++.... ..+.+ .++.++ .++||||+.+.
T Consensus 1 ~~~Ig~i~~~~~-------~-~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (313)
T 2h3h_A 1 MLTIGVIGKSVH-------P-YWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPS 66 (313)
T ss_dssp CCEEEEECSCSS-------H-HHHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CeEEEEEeCCCc-------H-HHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 357898874321 1 3444556667778888988766532 23322 233333 56899988654
No 128
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=27.96 E-value=36 Score=31.94 Aligned_cols=49 Identities=27% Similarity=0.287 Sum_probs=26.2
Q ss_pred hhHHHHhccCCEEEeCCCCCCcccchHHHHHHHHHHHHHHHHhhCCCCccEEEehH
Q psy14047 109 LKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICL 164 (350)
Q Consensus 109 ~~~~~~l~~~dgvIipG~g~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~PIlGIC~ 164 (350)
..+.+.++++|.|| +|-|..+. .+..-+.-..+.+.+++ .+ +|++.||-
T Consensus 279 ~~l~~~l~~ADLVI-TGEG~~D~-Qtl~GK~p~gVa~~A~~---~~--vPviaiaG 327 (383)
T 3cwc_A 279 LHLEACLADADLVI-TGEGRIDS-QTIHGKVPIGVANIAKR---YN--KPVIGIAG 327 (383)
T ss_dssp TTHHHHHHHCSEEE-ECCEESCC-----CHHHHHHHHHHHH---TT--CCEEEEEE
T ss_pred hChHhhhcCCCEEE-ECCCCCcC-cCCCCcHHHHHHHHHHH---hC--CCEEEEeC
Confidence 35778889999655 55444332 22222321123344444 34 99999993
No 129
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=27.56 E-value=1.1e+02 Score=25.62 Aligned_cols=61 Identities=10% Similarity=0.059 Sum_probs=38.5
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCC
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG 73 (350)
..+||+...... ...+.-+....-+.+++.|..++......+.+. ++.+. .++||||+.+.
T Consensus 2 s~~Igvi~~~~~-------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 2 DKVVAIIVTRLD-------SLSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp CCEEEEEESCTT-------CHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCEEEEEeCCCC-------CccHHHHHHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 457999875321 112444556667788888998877765544322 23333 46999999864
No 130
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=26.52 E-value=29 Score=31.51 Aligned_cols=20 Identities=35% Similarity=0.810 Sum_probs=15.4
Q ss_pred hHHHHhccCCEEEeCCCCCC
Q psy14047 110 KIEKILGQVNGVLIPGGGAS 129 (350)
Q Consensus 110 ~~~~~l~~~dgvIipG~g~~ 129 (350)
.+++.++.+||||+|||+..
T Consensus 79 ~i~~~l~~~dglil~GG~~~ 98 (315)
T 1l9x_A 79 DYEILFKSINGILFPGGSVD 98 (315)
T ss_dssp HHHHHHHHSSEEEECCCCCC
T ss_pred HHHHHHhcCCEEEEeCCCcc
Confidence 35566788999999998743
No 131
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=25.88 E-value=2e+02 Score=25.24 Aligned_cols=64 Identities=9% Similarity=0.055 Sum_probs=40.9
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCCC
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG~ 74 (350)
..+||+....... ...++.-+.....+.+++.|..++......+.+. ++.++ .++||||+.+..
T Consensus 61 ~~~Igvi~~~~~~-----~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 129 (338)
T 3dbi_A 61 TQTLGLVVTNTLY-----HGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRF 129 (338)
T ss_dssp CSEEEEEECTTTT-----STTHHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCEEEEEecCCcc-----cChhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 4689998754110 0123555667777888899999888776555432 23222 479999998653
No 132
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=25.36 E-value=2.9e+02 Score=24.00 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=35.1
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEE-ecCCCHH----HHHHhh-cccceEEcCC
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPI-FIGNPEA----YYRKIL-GQVNGVLIPG 72 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i-~~~~~~~----~~~~~l-~~~dGli~~G 72 (350)
...||+...... ..++.-+.....+++++.|..++.. +...+.+ .++.++ .++|||++.+
T Consensus 3 ~~~Igvi~~~~~-------~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~ 68 (316)
T 1tjy_A 3 AERIAFIPKLVG-------VGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSA 68 (316)
T ss_dssp CCEEEEECSSSS-------SHHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEEeCCCC-------ChHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 468999875321 1224555666777788889887655 3333322 233333 4678887764
No 133
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=25.24 E-value=1.3e+02 Score=25.66 Aligned_cols=61 Identities=13% Similarity=0.230 Sum_probs=39.6
Q ss_pred CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCe-EEEEecCCCHHH----HHHhh-cccceEEcCC
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGAR-VAPIFIGNPEAY----YRKIL-GQVNGVLIPG 72 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~-~v~i~~~~~~~~----~~~~l-~~~dGli~~G 72 (350)
...+||+...... ...+.-+.....+.+++.|.. ++......+.+. ++.+. .++||||+.+
T Consensus 9 ~~~~Igvi~~~~~-------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 9 KSKMIGIIIPDLN-------NRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCCEEEEEESCTT-------SHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCEEEEEeCCCC-------ChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 3468999975431 122555667777888889999 666655555432 23222 4799999987
No 134
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=25.17 E-value=68 Score=27.45 Aligned_cols=61 Identities=13% Similarity=0.109 Sum_probs=37.9
Q ss_pred CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCC
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGG 74 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~ 74 (350)
...+||+...... ...+.-+.....+.+++.|..++......+.+...+ + ++||||+.+..
T Consensus 7 ~~~~Igvi~~~~~-------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~-~-~vdgiI~~~~~ 67 (277)
T 3cs3_A 7 QTNIIGVYLADYG-------GSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPE-K-MVDGAIILDWT 67 (277)
T ss_dssp CCCEEEEEECSSC-------TTTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCT-T-TCSEEEEECTT
T ss_pred CCcEEEEEecCCC-------ChhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhh-c-cccEEEEecCC
Confidence 3468999975321 123444566677788889998877665433221111 2 89999987653
No 135
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=25.01 E-value=96 Score=26.33 Aligned_cols=60 Identities=17% Similarity=0.167 Sum_probs=39.0
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCC
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPG 72 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~G 72 (350)
..+||+...... ...+.-+.....+.+++.|..++......+.+. ++.+. .++||||+.+
T Consensus 8 ~~~Ig~i~~~~~-------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 8 SKLIGLLLPDMS-------NPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA 72 (277)
T ss_dssp --CEEEEESCTT-------SHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG
T ss_pred CCEEEEEECCCC-------CHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 357999875421 122555667777888889999888777665432 22222 5799999987
No 136
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=24.92 E-value=1.8e+02 Score=22.45 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHcCCeEEEEec
Q psy14047 31 IPASYVKAVEASGARVAPIFI 51 (350)
Q Consensus 31 i~~~yv~~l~~~G~~~v~i~~ 51 (350)
+....++.+.+.|.++.++..
T Consensus 29 ~G~~~~~~L~~~G~~V~~vnp 49 (138)
T 1y81_A 29 YGNIILKDLLSKGFEVLPVNP 49 (138)
T ss_dssp HHHHHHHHHHHTTCEEEEECT
T ss_pred HHHHHHHHHHHCCCEEEEeCC
Confidence 346677888999998655544
No 137
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=24.27 E-value=1.2e+02 Score=25.11 Aligned_cols=62 Identities=8% Similarity=-0.059 Sum_probs=40.7
Q ss_pred CEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCC--CHHHHHHhhcccceEEcC
Q psy14047 7 PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGN--PEAYYRKILGQVNGVLIP 71 (350)
Q Consensus 7 p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~--~~~~~~~~l~~~dGli~~ 71 (350)
.+..|.+.|... ..-.+...-+...+++.++++|..+..+.... +...+.+.+...|+|||.
T Consensus 14 ~iLii~gsP~~~---~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~ 77 (204)
T 2amj_A 14 NILIINGAKKFA---HSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQ 77 (204)
T ss_dssp EEEEEECCC---------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEE
T ss_pred CEEEEEcCCCcc---cCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEE
Confidence 467788887631 10012255677888888898899988887764 344555667888999875
No 138
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=24.23 E-value=1.6e+02 Score=25.25 Aligned_cols=62 Identities=10% Similarity=0.043 Sum_probs=41.1
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCC--CHH----HHHHhh-cccceEEcCCCC
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGN--PEA----YYRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~--~~~----~~~~~l-~~~dGli~~GG~ 74 (350)
..+||+...... ...+.-+.....+++++.|..++...... +.+ .++.++ .++||||+.+..
T Consensus 5 ~~~Igvi~~~~~-------~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~ 73 (304)
T 3o1i_D 5 DEKICAIYPHLK-------DSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVD 73 (304)
T ss_dssp CCEEEEEESCSC-------SHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred CcEEEEEeCCCC-------CcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 457999875431 12255666777888888999988887765 432 223332 479999988654
No 139
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=24.08 E-value=77 Score=27.83 Aligned_cols=42 Identities=12% Similarity=0.233 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCeEEEEecCC----CHHHHHHhh---cccceEEcCCCC
Q psy14047 33 ASYVKAVEASGARVAPIFIGN----PEAYYRKIL---GQVNGVLIPGGG 74 (350)
Q Consensus 33 ~~yv~~l~~~G~~~v~i~~~~----~~~~~~~~l---~~~dGli~~GG~ 74 (350)
..+.+.|++.|+.++.+|.-. +.+.+...+ ...|.|+||-..
T Consensus 38 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~n 86 (286)
T 1jr2_A 38 DPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPR 86 (286)
T ss_dssp CHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHH
T ss_pred cHHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCHH
Confidence 678899999999998888532 233444433 678999999654
No 140
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=23.28 E-value=2e+02 Score=25.39 Aligned_cols=62 Identities=10% Similarity=0.060 Sum_probs=39.2
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCCC
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG~ 74 (350)
..+||+...... ...+.-+.....+.+++.|..++......+.+. ++.++ .++||||+.+..
T Consensus 68 ~~~Ig~i~~~~~-------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~ 134 (344)
T 3kjx_A 68 VNLVAVIIPSLS-------NMVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLE 134 (344)
T ss_dssp CSEEEEEESCSS-------SSSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCEEEEEeCCCC-------cHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 358999875431 123455566677777888999877766555432 23333 369999997643
No 141
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=22.81 E-value=1.9e+02 Score=24.62 Aligned_cols=63 Identities=14% Similarity=0.124 Sum_probs=39.7
Q ss_pred CCCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCCC
Q psy14047 5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 5 ~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG~ 74 (350)
...+||+...... ..++.-+.....+++++.|..++......+.+. ++.++ .++||||+.+..
T Consensus 7 ~~~~Igvi~~~~~-------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 74 (285)
T 3c3k_A 7 KTGMLLVMVSNIA-------NPFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDAL 74 (285)
T ss_dssp CCCEEEEEESCTT-------SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCG
T ss_pred CCCEEEEEeCCCC-------CchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 3468999985321 122445566777788889998877765554332 23333 469999997653
No 142
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=22.42 E-value=2.1e+02 Score=24.33 Aligned_cols=62 Identities=11% Similarity=0.136 Sum_probs=39.0
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCCC
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG~ 74 (350)
..+||+...... ...+.-+....-+.+++.|..++......+.+. ++.++ .++||||+.+..
T Consensus 20 ~~~Ig~i~~~~~-------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 86 (293)
T 2iks_A 20 TRSIGLVIPDLE-------NTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSL 86 (293)
T ss_dssp CCEEEEEESCSC-------SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CcEEEEEeCCCc-------CcHHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 358999875321 112445566667778889998877665544332 33333 469999998653
No 143
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=22.16 E-value=85 Score=26.04 Aligned_cols=43 Identities=21% Similarity=0.140 Sum_probs=27.1
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCcccchhHHHHH----HHHHc--CCeEEEEecCC
Q psy14047 4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVK----AVEAS--GARVAPIFIGN 53 (350)
Q Consensus 4 ~~~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~----~l~~~--G~~~v~i~~~~ 53 (350)
-+|.|++|.+.++. .+...-+...+++ .+++. |+.+..|....
T Consensus 10 ~~~~il~i~GS~r~-------~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d 58 (191)
T 3k1y_A 10 HMRTLAVISAGLST-------PSSTRQIADSISEAVTAAVSARGEALSVSTIELSE 58 (191)
T ss_dssp CSEEEEEEECCCSS-------SCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred hhceEEEEECCCCC-------CCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHh
Confidence 35678999988864 1223445556666 55566 77777777643
No 144
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=21.71 E-value=1.7e+02 Score=26.12 Aligned_cols=61 Identities=11% Similarity=0.154 Sum_probs=39.0
Q ss_pred CEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHHH----HHHhh-cccceEEcCCCC
Q psy14047 7 PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAY----YRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 7 p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~~----~~~~l-~~~dGli~~GG~ 74 (350)
.+||+...... ...+.-+....-+.+++.|..++......+.+. ++.++ .++||||+.+..
T Consensus 71 ~~Igvi~~~~~-------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 136 (355)
T 3e3m_A 71 GFVGLLLPSLN-------NLHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDG 136 (355)
T ss_dssp CEEEEEESCSB-------CHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CEEEEEeCCCC-------chHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 57999875421 112444566777788889999887776555432 22222 479999997643
No 145
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=21.63 E-value=19 Score=31.23 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=13.9
Q ss_pred HHHhccCCEEEeCCCCCC
Q psy14047 112 EKILGQVNGVLIPGGGAS 129 (350)
Q Consensus 112 ~~~l~~~dgvIipG~g~~ 129 (350)
++.++++||||+|||...
T Consensus 52 ~~~l~~~Dglil~GG~~~ 69 (239)
T 1o1y_A 52 ERPLEEYSLVVLLGGYMG 69 (239)
T ss_dssp SSCGGGCSEEEECCCSCC
T ss_pred ccchhcCCEEEECCCCcc
Confidence 445778999999998643
No 146
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=21.54 E-value=2.2e+02 Score=24.04 Aligned_cols=64 Identities=9% Similarity=0.061 Sum_probs=38.6
Q ss_pred CCEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHH----HHHHhh-cccceEEcCCCC
Q psy14047 6 RPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEA----YYRKIL-GQVNGVLIPGGG 74 (350)
Q Consensus 6 ~p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~----~~~~~l-~~~dGli~~GG~ 74 (350)
..+||+....... . ...+.-+.....+++++.|..++......+.+ .++.++ .++||||+.+..
T Consensus 19 ~~~Ig~i~~~~~~--~---~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 87 (296)
T 3brq_A 19 TQTLGLVVTNTLY--H---GIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRF 87 (296)
T ss_dssp CCEEEEEECGGGC--C-----CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CceEEEEeCCccc--C---CchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 3589998753100 1 12344556677778888999887766554433 233333 469999987653
No 147
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=21.31 E-value=59 Score=29.02 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=25.9
Q ss_pred hHHHHHHHHHcCCeEEEEecCCCHHHHHHhhcccceEEcCCCCc
Q psy14047 32 PASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGA 75 (350)
Q Consensus 32 ~~~yv~~l~~~G~~~v~i~~~~~~~~~~~~l~~~dGli~~GG~~ 75 (350)
.....++|++.|..+........ .+...|.++.-||..
T Consensus 42 ~~~l~~~L~~~g~~v~~~~~~~~------~~~~~DlvIvlGGDG 79 (278)
T 1z0s_A 42 VKRIEEALKRLEVEVELFNQPSE------ELENFDFIVSVGGDG 79 (278)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCG------GGGGSSEEEEEECHH
T ss_pred HHHHHHHHHHCCCEEEEcccccc------ccCCCCEEEEECCCH
Confidence 56778899999998765443221 245778888887753
No 148
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=20.64 E-value=2.1e+02 Score=24.40 Aligned_cols=60 Identities=15% Similarity=0.220 Sum_probs=38.6
Q ss_pred CEEEEEccCCCCCCCCCCCCcccchhHHHHHHHHHcCCeEEEEecCCCHH----HHHHhh-cccceEEcCCC
Q psy14047 7 PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEA----YYRKIL-GQVNGVLIPGG 73 (350)
Q Consensus 7 p~Igi~~~~~~~~~~~~~~~~~~~i~~~yv~~l~~~G~~~v~i~~~~~~~----~~~~~l-~~~dGli~~GG 73 (350)
.+|||...... ..++.-+.....+++++.|..++......+.+ .++.++ .++||||+.+.
T Consensus 17 ~~Igvi~~~~~-------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 81 (289)
T 2fep_A 17 TTVGVIIPDIS-------SIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGG 81 (289)
T ss_dssp CEEEEEESCTT-------SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CeEEEEeCCCC-------CchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 58999875321 11244566677788888999887776554432 233333 57999999764
Done!