RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14047
(350 letters)
>gnl|CDD|153218 cd01747, GATase1_Glutamyl_Hydrolase, Type 1 glutamine
amidotransferase (GATase1) domain found in
gamma-Glutamyl Hydrolase. Type 1 glutamine
amidotransferase (GATase1) domain found in
gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase
catalyzes the cleavage of the gamma-glutamyl chain of
folylpoly-gamma-glutamyl substrates and is a central
enzyme in folyl and antifolyl poly-gamma-glutamate
metabolism. GATase activity involves the removal of the
ammonia group from a glutamate molecule and its
subsequent transfer to a specific substrate, thus
creating a new carbon-nitrogen group on the substrate.
gamma-Glutamyl hydrolases belong to the triad family of
amidotransferases having a conserved Cys-His-Glu
catalytic triad in the glutaminase active site.
Length = 273
Score = 263 bits (675), Expect = 2e-87
Identities = 123/328 (37%), Positives = 165/328 (50%), Gaps = 57/328 (17%)
Query: 9 IGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGV 68
IGILTQ P G SYI ASYVK +E++GARV PI+I E YY K+ +NG+
Sbjct: 1 IGILTQ-PVDG-AGSNKTGHSYIAASYVKFLESAGARVVPIWINESEEYYDKLFKSINGI 58
Query: 69 LIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGA 128
L PGG + AK
Sbjct: 59 LFPGGAVDIDTSG--------YARTAKI-------------------------------- 78
Query: 129 SFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYE 188
IY +A E N+ DYFP+ G CLGF+LL Y ++ E L +
Sbjct: 79 --------------IYNLALERNDAGDYFPVWGTCLGFELLTYLTSGETLLLEATEATNS 124
Query: 189 NLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEW-KVLS 247
L L F QS L+ R P +L+ LAT +T N H + I+P NFT+NGL ++ VL+
Sbjct: 125 ALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLLSDFFNVLT 184
Query: 248 TNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVS 307
TN + G++FIS+VE YP G+Q+HPEKNA+EWK + PH+ AI +YF ++ V+
Sbjct: 185 TNDDWNGVEFISTVEAYKYPIYGVQWHPEKNAFEWKKSSSIPHSEEAIRLTQYFANFFVN 244
Query: 308 QASGSHHSFETEEEEKAALIYNYCPEYT 335
+A S++ FE+ EEE LIYNY P YT
Sbjct: 245 EARKSNNRFESAEEETKHLIYNYKPTYT 272
>gnl|CDD|219535 pfam07722, Peptidase_C26, Peptidase C26. These peptidases have
gamma-glutamyl hydrolase activity; that is they catalyze
the cleavage of the gamma-glutamyl bond in
poly-gamma-glutamyl substrates. They are structurally
related to pfam00117, but contain extensions in four
loops and at the C terminus.
Length = 219
Score = 91.9 bits (229), Expect = 6e-22
Identities = 60/289 (20%), Positives = 82/289 (28%), Gaps = 89/289 (30%)
Query: 7 PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVN 66
P+IGI G A SYI ASYVKAVE +G + I +L V+
Sbjct: 1 PVIGITANLGEEGGHVFHAAGASYIAASYVKAVEGAGGLPVLLPILEDPEDLEALLDLVD 60
Query: 67 GVLIPGGGA----SFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVL 122
G+L+ GG + S Y
Sbjct: 61 GLLLTGGQSNVDPSLY-------------------------------------------- 76
Query: 123 IPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLL-------LYTSNN 175
G GY +++A PI+GIC G QLL LY
Sbjct: 77 ----GEEPSPSGGYYDPARDAFELALIRAALERGKPILGICRGMQLLNVALGGTLYQDIP 132
Query: 176 ENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHV-----LQELATSHITH--NWHMWC 228
E+ + + + L L + + H
Sbjct: 133 EHPGNSDHHH------------QLAVQYAPSHAVSLEPGSLLARLLGAEEILVNSLHHQA 180
Query: 229 ITPSNFTDNGLAKEWKVLSTNSNNRGLK-FISSVEHKVYPFAGIQFHPE 276
I LA +V +T G I S Y G+Q+HPE
Sbjct: 181 IKR-------LAPGLRVEATAP--DGTIEAIESPNAP-YFVLGVQWHPE 219
>gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I.
Length = 186
Score = 61.1 bits (149), Expect = 4e-11
Identities = 39/158 (24%), Positives = 55/158 (34%), Gaps = 31/158 (19%)
Query: 120 GVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENEL 179
G++I G S A G I + KE EN+ PI+GICLG QLL
Sbjct: 43 GIIISPGPGSPGALGG------AI-EAIKELRENK--IPILGICLGHQLL---------- 83
Query: 180 RTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGL 239
F + + L I +H + + P L
Sbjct: 84 ---ALAFGGKVIKAKKEPHHGKNSPVGHDKGLFYGLPNVFIVRRYHSYAVDPDT-----L 135
Query: 240 AKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEK 277
+V + + N I ++ HK P G+QFHPE
Sbjct: 136 PDGLEVTAASENGG----IMAIRHKENPIFGVQFHPES 169
>gnl|CDD|224982 COG2071, COG2071, Predicted glutamine amidotransferases [General
function prediction only].
Length = 243
Score = 51.2 bits (123), Expect = 2e-07
Identities = 62/319 (19%), Positives = 101/319 (31%), Gaps = 104/319 (32%)
Query: 6 RPIIGILTQEPCLGVDKHFADFK-SYIPASYVKAVEASGARVAPIFI--GNPEAYYRKIL 62
+P+IGI T + F SY+P YV A+ +G PI + R+ L
Sbjct: 3 KPVIGI-TADLIQ-EIVGFDGNPWSYLPYDYVDAIIKAG--GIPILLPALEDPEDARQYL 58
Query: 63 GQVNGVLIPGGG---ASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVN 119
++G+++ GG S Y ++ K G
Sbjct: 59 DLIDGLILTGGSNVDPSLYGEEPSEKDGPY------------------------------ 88
Query: 120 GVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLL-------LYT 172
D + A + + A E PI+GIC G QLL LY
Sbjct: 89 ----------DPERDAFELA---LIRAALERG-----IPILGICRGLQLLNVALGGTLYQ 130
Query: 173 SNNE----NELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWC 228
+E + R E+ + P + + + + V +++H
Sbjct: 131 DISEQPGHIDHRQPNPVHIESHEVHIEPGSKLAKILGESEFMV----------NSFH--- 177
Query: 229 ITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFA-GIQFHPEKNAYEWKLTQD 287
+ LA V + + + +VE K F G+Q+HPE L
Sbjct: 178 ----HQAIKKLAPGLVVEARAPDG----TVEAVEVKNDAFVLGVQWHPE------YLVDT 223
Query: 288 NPHTRIAIENARYFFDWLV 306
NP + F+ V
Sbjct: 224 NPLSLA-------LFEAFV 235
>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like
domain. Type 1 glutamine amidotransferase
(GATase1)-like domain. This group includes proteins
similar to Class I glutamine amidotransferases, the
intracellular PH1704 from Pyrococcus horikoshii, the
C-terminal of the large catalase: Escherichia coli
HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4
beta-galactosidase middle domain. The majority of
proteins in this group have a reactive Cys found in the
sharp turn between a beta strand and an alpha helix
termed the nucleophile elbow. For Class I glutamine
amidotransferases proteins which transfer ammonia from
the amide side chain of glutamine to an acceptor
substrate, this Cys forms a Cys-His-Glu catalytic triad
in the active site. Glutamine amidotransferases
activity can be found in a range of biosynthetic enzymes
included in this cd: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. For
Pyrococcus horikoshii PH1704, the Cys of the nucleophile
elbow together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. The E. coli HP-II C-terminal
domain, S. meliloti Rm1021 ThuA and the A4
beta-galactosidase middle domain lack the catalytic
triad typical GATaseI domains. GATase1-like domains can
occur either as single polypeptides, as in Class I
glutamine amidotransferases, or as domains in a much
larger multifunctional synthase protein, such as CPSase.
Length = 115
Score = 44.5 bits (105), Expect = 5e-06
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTS 173
L +G+++PGG + A++ + A PI+GICLG QLL+
Sbjct: 44 LDDYDGLILPGGPGTPDDLARDEALLALLREAAAA------GKPILGICLGAQLLVLGV 96
Score = 31.4 bits (71), Expect = 0.19
Identities = 15/73 (20%), Positives = 28/73 (38%)
Query: 24 FADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGY 83
F F+ AS + A+ +GA V + L +G+++PGG +
Sbjct: 6 FPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARD 65
Query: 84 AKAGAMIYKIAKE 96
A++ + A
Sbjct: 66 EALLALLREAAAA 78
>gnl|CDD|153211 cd01740, GATase1_FGAR_AT, Type 1 glutamine amidotransferase
(GATase1)-like domain found in Formylglycinamide
ribonucleotide amidotransferase. Type 1 glutamine
amidotransferase (GATase1)-like domain found in
Formylglycinamide ribonucleotide amidotransferase
(FGAR-AT). FGAR-AT catalyzes the ATP-dependent
conversion of formylglycinamide ribonucleotide (FGAR)
and glutamine to formylglycinamidine ribonucleotide
(FGAM), ADP, Pi, and glutamate in the fourth step of the
purine biosynthetic pathway. FGAR-AT is a glutamine
amidotransferase. Glutamine amidotransferase activity
catalyses the transfer of ammonia from the amide side
chain of glutamine to an acceptor substrate. FGAR-AT
belongs to the triad family of amidotransferases having
a conserved Cys-His-Glu catalytic triad in the
glutaminase active site.
Length = 238
Score = 44.1 bits (105), Expect = 4e-05
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
Query: 103 DIW-QSLLKIEKILGQVNGVLIPGGGASF-YAD--DGYAKAGAMIYKIA--KEFNENRDY 156
D+W LL K L +GV++PGG F Y D A A A + KEF E R
Sbjct: 28 DVWHNDLLAGRKDLDDYDGVVLPGG---FSYGDYLRAGAIAAASPLLMEEVKEFAE-RGG 83
Query: 157 FPIMGICLGFQLL 169
++GIC GFQ+L
Sbjct: 84 -LVLGICNGFQIL 95
>gnl|CDD|153216 cd01745, GATase1_2, Subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. This group
contains a subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. GATase
activity catalyses the transfer of ammonia from the
amide side chain of glutamine to an acceptor substrate.
Glutamine amidotransferases (GATase) includes the triad
family of amidotransferases which have a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site. In this subgroup this triad is conserved. GATase
activity can be found in a range of biosynthetic
enzymes, including: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase ,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. Glutamine
amidotransferase (GATase) domains can occur either as
single polypeptides, as in glutamine amidotransferases,
or as domains in a much larger multifunctional synthase
protein, such as CPSase.
Length = 189
Score = 42.9 bits (102), Expect = 5e-05
Identities = 34/161 (21%), Positives = 50/161 (31%), Gaps = 48/161 (29%)
Query: 9 IGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGV 68
IGI T + + Y+ YV AV +G + + E + L ++G+
Sbjct: 1 IGI-TARLREEEGGYE--RRDYLNQYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGL 57
Query: 69 LIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGA 128
L+ GGG D+ L P G
Sbjct: 58 LLTGGG----------------------------DVDPPLY---------GEEPHPELGP 80
Query: 129 SFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLL 169
D + A + + A E PI+GIC G QLL
Sbjct: 81 IDPERDAFELA---LLRAALERG-----KPILGICRGMQLL 113
>gnl|CDD|233553 TIGR01737, FGAM_synth_I, phosphoribosylformylglycinamidine synthase
I. In some species, phosphoribosylformylglycinamidine
synthase is composed of a single polypeptide chain. This
model describes the PurQ protein of Bacillus subtilis
(where PurL, PurQ, and PurS are required for
phosphoribosylformylglycinamidine synthase activity) and
functionally equivalent proteins from other bacteria and
archaea [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 227
Score = 43.5 bits (103), Expect = 6e-05
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 11/64 (17%)
Query: 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAM-----IYKIAKEFNENRDYFPIMGICLGF 166
+ L +GV++PGG F D Y +AGA+ I + +EF E P++GIC GF
Sbjct: 35 DGSLPDYDGVVLPGG---FSYGD-YLRAGAIAAASPIMQEVREFAE--KGVPVLGICNGF 88
Query: 167 QLLL 170
Q+L+
Sbjct: 89 QILV 92
>gnl|CDD|153214 cd01743, GATase1_Anthranilate_Synthase, Type 1 glutamine
amidotransferase (GATase1) domain found in Anthranilate
synthase. Type 1 glutamine amidotransferase (GATase1)
domain found in Anthranilate synthase (ASase). This
group contains proteins similar to para-aminobenzoate
(PABA) synthase and ASase. These enzymes catalyze
similar reactions and produce similar products, PABA and
ortho-aminobenzoate (anthranilate). Each enzyme is
composed of non-identical subunits: a glutamine
amidotransferase subunit (component II) and a subunit
that produces an aminobenzoate products (component I).
ASase catalyses the synthesis of anthranilate from
chorismate and glutamine and is a tetrameric protein
comprising two copies each of components I and II.
Component II of ASase belongs to the family of triad
GTases which hydrolyze glutamine and transfer nascent
ammonia between the active sites. In some bacteria, such
as Escherichia coli, component II can be much larger
than in other organisms, due to the presence of
phosphoribosyl-anthranilate transferase (PRTase)
activity. PRTase catalyses the second step in tryptophan
biosynthesis and results in the addition of
5-phosphoribosyl-1-pyrophosphate to anthranilate to
create N-5'-phosphoribosyl-anthranilate. In E.coli, the
first step in the conversion of chorismate to PABA
involves two proteins: PabA and PabB which co-operate to
transfer the amide nitrogen of glutamine to chorismate
forming 4-amino-4 deoxychorismate (ADC). PabA acts as a
glutamine amidotransferase, supplying an amino group to
PabB, which carries out the amination reaction. A third
protein PabC then mediates elimination of pyruvate and
aromatization to give PABA. Several organisms have
bipartite proteins containing fused domains homologous
to PabA and PabB commonly called PABA synthases. These
hybrid PABA synthases may produce ADC and not PABA.
Length = 184
Score = 42.9 bits (102), Expect = 6e-05
Identities = 28/130 (21%), Positives = 42/130 (32%), Gaps = 42/130 (32%)
Query: 157 FPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELA 216
PI+G+CLG Q + + F + P + IH
Sbjct: 72 VPILGVCLGHQAI-------------AEAF--GGKVVRAPEPMHGK---TSEIHHDGSGL 113
Query: 217 TSHITHNWHMWCITPSNFT----------DNGLAKEWKVLSTNSNNRGLKFISSVEHKVY 266
+ P FT + L +V T S G+ I ++ H+
Sbjct: 114 FKGL----------PQPFTVGRYHSLVVDPDPLPDLLEV--TASTEDGV--IMALRHRDL 159
Query: 267 PFAGIQFHPE 276
P G+QFHPE
Sbjct: 160 PIYGVQFHPE 169
>gnl|CDD|153213 cd01742, GATase1_GMP_Synthase, Type 1 glutamine amidotransferase
(GATase1) domain found in GMP synthetase. Type 1
glutamine amidotransferase (GATase1) domain found in GMP
synthetase. GMP synthetase is a glutamine
amidotransferase from the de novo purine biosynthetic
pathway. Glutamine amidotransferase (GATase) activity
catalyse the transfer of ammonia from the amide side
chain of glutamine to an acceptor substrate. GMP
synthetase catalyses the amination of the nucleotide
precursor xanthosine 5'-monophospahte to form GMP. GMP
synthetase belongs to the triad family of
amidotransferases having a conserved Cys-His-Glu
catalytic triad in the glutaminase active site.
Length = 181
Score = 42.5 bits (101), Expect = 7e-05
Identities = 40/199 (20%), Positives = 76/199 (38%), Gaps = 61/199 (30%)
Query: 93 IAKEVSYRELDIWQSLL----KIEKILGQ-VNGVLIPGGGASFYADDGYAKAGAMIYKIA 147
IA+ V REL ++ +L +E+I + G+++ GG +S Y +D ++
Sbjct: 14 IARRV--RELGVYSEILPNTTPLEEIKLKNPKGIILSGGPSSVYEED--------APRVD 63
Query: 148 KE-FNENRDYFPIMGICLGFQLLLY-------TSNNENELRTRCDCFYENLALEFMPSFR 199
E F P++GIC G QL+ + + + + E +P
Sbjct: 64 PEIFELG---VPVLGICYGMQLIAKALGGKVERGDKREYGKAEIEIDDSSPLFEGLPD-E 119
Query: 200 QSLLYSRAPIHVLQELATSHITHNWHMWCIT--PSNFTDNGLAKEWKVLSTNSNNRGLKF 257
Q++ S H + P F KV++++ N
Sbjct: 120 QTVWMS-------------------HGDEVVKLPEGF---------KVIASSDNCP---- 147
Query: 258 ISSVEHKVYPFAGIQFHPE 276
++++ ++ G+QFHPE
Sbjct: 148 VAAIANEEKKIYGVQFHPE 166
>gnl|CDD|223125 COG0047, PurL, Phosphoribosylformylglycinamidine (FGAM) synthase,
glutamine amidotransferase domain [Nucleotide transport
and metabolism].
Length = 231
Score = 43.3 bits (103), Expect = 7e-05
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 16/73 (21%)
Query: 103 DIWQSLLKIEKILGQ-VNGVLIPGGGASF-YADDGYAKAGAM--IYKIAKEFNE--NRDY 156
D+W S + +LG+ +GV++PGG F Y D Y +AGA+ I + E E +
Sbjct: 32 DVWHS----DLLLGRDFDGVVLPGG---FSYGD--YLRAGAIAAIAPVMDEVREFAEKGK 82
Query: 157 FPIMGICLGFQLL 169
P++GIC GFQ+L
Sbjct: 83 -PVLGICNGFQIL 94
>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like
domain. Type 1 glutamine amidotransferase
(GATase1)-like domain. This group contains proteins
similar to Class I glutamine amidotransferases, the
intracellular PH1704 from Pyrococcus horikoshii, the
C-terminal of the large catalase: Escherichia coli
HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4
beta-galactosidase middle domain and peptidase E. The
majority of proteins in this group have a reactive Cys
found in the sharp turn between a beta strand and an
alpha helix termed the nucleophile elbow. For Class I
glutamine amidotransferases proteins which transfer
ammonia from the amide side chain of glutamine to an
acceptor substrate, this Cys forms a Cys-His-Glu
catalytic triad in the active site. Glutamine
amidotransferases activity can be found in a range of
biosynthetic enzymes included in this cd: glutamine
amidotransferase, formylglycinamide ribonucleotide, GMP
synthetase, anthranilate synthase component II,
glutamine-dependent carbamoyl phosphate synthase
(CPSase), cytidine triphosphate synthetase,
gamma-glutamyl hydrolase, imidazole glycerol phosphate
synthase and, cobyric acid synthase. For Pyrococcus
horikoshii PH1704, the Cys of the nucleophile elbow
together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. Peptidase E is believed to be
a serine peptidase having a Ser-His-Glu catalytic triad
which differs from the Cys-His-Glu catalytic triad of
typical GATase1 domains, by having a Ser in place of the
reactive Cys at the nucleophile elbow. The E. coli HP-II
C-terminal domain, S. meliloti Rm1021 ThuA and the A4
beta-galactosidase middle domain lack the catalytic
triad typical GATaseI domains. GATase1-like domains can
occur either as single polypeptides, as in Class I
glutamine amidotransferases, or as domains in a much
larger multifunctional synthase protein, such as CPSase.
Peptidase E has a circular permutation in the common
core of a typical GTAse1 domain.
Length = 92
Score = 40.3 bits (94), Expect = 1e-04
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLL 169
L +G+++PGG + A++ + A P++GICLG QLL
Sbjct: 44 LDDYDGLILPGGPGTPDDLAWDEALLALLREAAAA------GKPVLGICLGAQLL 92
Score = 34.1 bits (78), Expect = 0.018
Identities = 14/73 (19%), Positives = 27/73 (36%)
Query: 24 FADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVNGVLIPGGGASFYADDGY 83
F + AS + A+ +GA V + L +G+++PGG +
Sbjct: 6 FGGSEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWD 65
Query: 84 AKAGAMIYKIAKE 96
A++ + A
Sbjct: 66 EALLALLREAAAA 78
>gnl|CDD|233588 TIGR01823, PabB-fungal, aminodeoxychorismate synthase, fungal
clade. This model represents the fungal clade of a
para-aminobenzoate synthesis enzyme,
aminodeoxychorismate synthase, which acts on chorismate
in a pathway that yields PABA, a precursor of folate.
Length = 742
Score = 43.0 bits (101), Expect = 2e-04
Identities = 36/179 (20%), Positives = 63/179 (35%), Gaps = 44/179 (24%)
Query: 103 DIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGI 162
+ + L + I V+ PG G + A+ +I ++ + N D P++GI
Sbjct: 46 QLLELLPLFDAI------VVGPGPG-----NPNNAQDMGIISELWE--LANLDEVPVLGI 92
Query: 163 CLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYS-----RAPIHVLQELAT 217
CLGFQ L C + + +P+ + +Y A L +
Sbjct: 93 CLGFQSL---------------CLAQGADISRLPTPKHGQVYEMHTNDAAIFCGLFSV-K 136
Query: 218 SHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPE 276
S H+ + D L + + S + K P+ G+Q+HPE
Sbjct: 137 STRYHSLYANPEGI----DTLLP--LCLTEDEEGI----ILMSAQTKKKPWFGVQYHPE 185
>gnl|CDD|214365 CHL00101, trpG, anthranilate synthase component 2.
Length = 190
Score = 40.5 bits (95), Expect = 4e-04
Identities = 30/135 (22%), Positives = 41/135 (30%), Gaps = 47/135 (34%)
Query: 155 DYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIH---- 210
Y PI+G+CLG Q + Y F ++ + P+H
Sbjct: 71 PYIPILGVCLGHQSIGYL-------------------------FGGKIIKAPKPMHGKTS 105
Query: 211 --------VLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVE 262
+ Q L +H I P N W + I +
Sbjct: 106 KIYHNHDDLFQGLPNPFTATRYHSLIIDPLNLPSPLEITAW-----TEDG----LIMACR 156
Query: 263 HKVYPFA-GIQFHPE 276
HK Y GIQFHPE
Sbjct: 157 HKKYKMLRGIQFHPE 171
>gnl|CDD|129966 TIGR00888, guaA_Nterm, GMP synthase (glutamine-hydrolyzing),
N-terminal domain or A subunit. This protein of purine
de novo biosynthesis is well-conserved. However, it
appears to split into two separate polypeptide chains in
most of the Archaea. This N-terminal region would be the
smaller subunit [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 188
Score = 40.4 bits (95), Expect = 5e-04
Identities = 41/196 (20%), Positives = 80/196 (40%), Gaps = 55/196 (28%)
Query: 93 IAKEVSYREL--DIWQSLLKIEKILG-QVNGVLIPGGGASFYADDGYAKAGAMIYKIAKE 149
IA+ + + ++ + +E+I G+++ GG +S YA++ +A I+++
Sbjct: 14 IARRLRELGVYSELVPNTTPLEEIREKNPKGIILSGGPSSVYAENAP-RADEKIFELGV- 71
Query: 150 FNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPI 209
P++GIC G QL+ L E + ++ Y +A +
Sbjct: 72 --------PVLGICYGMQLMAKQ-----------------LGGEVGRAEKRE--YGKAEL 104
Query: 210 HVLQELATSHITHN-------W--HMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISS 260
+L E + W H + L + +KVL+T+ N +++
Sbjct: 105 EILDE---DDLFRGLPDESTVWMSHGDKVK-------ELPEGFKVLATSDNCP----VAA 150
Query: 261 VEHKVYPFAGIQFHPE 276
+ H+ P G+QFHPE
Sbjct: 151 MAHEEKPIYGVQFHPE 166
>gnl|CDD|232926 TIGR00337, PyrG, CTP synthase. CTP synthase is involved in
pyrimidine ribonucleotide/ribonucleoside metabolism. The
enzyme catalyzes the reaction L-glutamine + H2O + UTP +
ATP = CTP + phosphate + ADP + L-glutamate. The enzyme
exists as a dimer of identical chains that aggregates as
a tetramer. This gene has been found circa 500 bp 5'
upstream of enolase in both beta (Nitrosomonas europaea)
and gamma (E.coli) subdivisions of proteobacterium (FEMS
Microbiol Lett 1998 Aug 1;165(1):153-7) [Purines,
pyrimidines, nucleosides, and nucleotides, Pyrimidine
ribonucleotide biosynthesis].
Length = 525
Score = 41.2 bits (97), Expect = 6e-04
Identities = 42/189 (22%), Positives = 64/189 (33%), Gaps = 47/189 (24%)
Query: 114 ILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLL--Y 171
L V+G+L+PGG + + G I I K EN P +GICLG QL + +
Sbjct: 340 FLKGVDGILVPGG----FGERGVE---GKILAI-KYARENN--IPFLGICLGMQLAVIEF 389
Query: 172 TSN-------NENELRTRCDCFYENLALEFMPSF--------------RQSLLYSRAPIH 210
N N E + ++ +P +L
Sbjct: 390 ARNVLGLKGANSTEFDPET----KYPVVDLLPEQKDISDLGGTMRLGLYPCILKPGTLAF 445
Query: 211 VLQELATSHITHNWHMWCITPS---NFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYP 267
L + H H + + + GL V T+ + R ++ I +H
Sbjct: 446 KLYGKEEVYERHR-HRYEVNNEYREQLENKGL----IVSGTSPDGRLVEIIELPDHPF-- 498
Query: 268 FAGIQFHPE 276
F QFHPE
Sbjct: 499 FVACQFHPE 507
>gnl|CDD|223592 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain
[Nucleotide transport and metabolism].
Length = 198
Score = 40.3 bits (95), Expect = 6e-04
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 89 MIYKIAKEVSYRELDIWQSLLKIEKI-LGQVNGVLIPGGGASFYADDGYAKA-GAMIYKI 146
+I + +E+ Y +I E++ L +G++I GG S Y +D + +I
Sbjct: 16 LIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDA 75
Query: 147 AKEFNENRDYFPIMGICLGFQLL 169
P++GICLG QLL
Sbjct: 76 GVP------GKPVLGICLGHQLL 92
>gnl|CDD|153215 cd01744, GATase1_CPSase, Small chain of the glutamine-dependent
form of carbamoyl phosphate synthase, CPSase II. This
group of sequences represents the small chain of the
glutamine-dependent form of carbamoyl phosphate
synthase, CPSase II. CPSase II catalyzes the production
of carbomyl phosphate (CP) from bicarbonate, glutamine
and two molecules of MgATP. The reaction is believed to
proceed by a series of four biochemical reactions
involving a minimum of three discrete highly reactive
intermediates. The synthesis of CP is critical for the
initiation of two separate biosynthetic pathways. In one
CP is coupled to aspartate, its carbon and nitrogen
nuclei ultimately incorporated into the aromatic
moieties of pyrimidine nucleotides. In the second
pathway CP is condensed with ornithine at the start of
the urea cycle and is utilized for the detoxification of
ammonia and biosynthesis of arginine. CPSases may be
encoded by one or by several genes, depending on the
species. The E.coli enzyme is a heterodimer consisting
of two polypeptide chains referred to as the small and
large subunit. Ammonia an intermediate during the
biosynthesis of carbomyl phosphate produced by the
hydrolysis of glutamine in the small subunit of the
enzyme is delivered via a molecular tunnel between the
remotely located carboxyphosphate active site in the
large subunit. CPSase IIs belong to the triad family of
amidotransferases having a conserved Cys-His-Glu
catalytic triad in the glutaminase active site. This
group also contains the sequence from the mammalian urea
cycle form which has lost the active site Cys, resulting
in an ammonia-dependent form, CPSase I.
Length = 178
Score = 39.0 bits (92), Expect = 0.001
Identities = 39/156 (25%), Positives = 53/156 (33%), Gaps = 61/156 (39%)
Query: 158 PIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL----EFMPSFRQSLLYSRAPIHVLQ 213
PI GICLG QLL LAL M R H ++
Sbjct: 71 PIFGICLGHQLL-------------------ALALGAKTYKMK------FGHRGSNHPVK 105
Query: 214 ELATSHI---THNWHMWCITPSNFTDNGLAKEWKVLSTNSN---NRGLKFISSVEHKVYP 267
+L T + + N H + + P + L +V N N G++ HK P
Sbjct: 106 DLITGRVYITSQN-HGYAVDPDS-----LPGGLEVTHVNLNDGTVEGIR------HKDLP 153
Query: 268 FAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFD 303
+QFHPE + PH + Y FD
Sbjct: 154 VFSVQFHPEASP--------GPH------DTEYLFD 175
>gnl|CDD|223196 COG0118, HisH, Glutamine amidotransferase [Amino acid transport and
metabolism].
Length = 204
Score = 39.1 bits (92), Expect = 0.001
Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 36/177 (20%)
Query: 113 KILGQVNGVLIPGGGASFYADDGYAKAGA--MIYKIAKEFNENRDYFPIMGICLGFQLLL 170
+ + + + +++PG GA A +I I + + P +GICLG QL L
Sbjct: 35 EEILKADKLILPGVGA---FGAAMANLRERGLIEAIKEAVESGK---PFLGICLGMQL-L 87
Query: 171 YTSNNENELRTRCDCFYENLALEFMPSFRQSL-------LYSRAPIHVLQELAT-SHI-- 220
+ + E + P+ + + + + + ++
Sbjct: 88 FERSEEGGGVKGLGLIPGKV--VRFPAEDLKVPHMGWNQVEFVRGHPLFKGIPDGAYFYF 145
Query: 221 THNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEK 277
H++++ P V +T+ G F ++V G QFHPEK
Sbjct: 146 VHSYYVPPGNPET----------VVATTD---YGEPFPAAVAKD--NVFGTQFHPEK 187
>gnl|CDD|178226 PLN02617, PLN02617, imidazole glycerol phosphate synthase hisHF.
Length = 538
Score = 40.1 bits (94), Expect = 0.002
Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 30/138 (21%)
Query: 154 RDYF----PIMGICLGFQLLLYTSNNENE-------LRTRCDCFYENLALEFMPSFRQSL 202
R+Y P +GICLG QLL + S+ EN + F + L +P +
Sbjct: 73 REYIQNDRPFLGICLGLQLL-FESSEENGPVEGLGVIPGVVGRFDSSNGLR-VPHIGWNA 130
Query: 203 LYSRAPIHVLQELATSHI--THNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISS 260
L +L + H+ H++ TPS+ +N K+W VL+T N G +FI+S
Sbjct: 131 LQITKDSELLDGVGGRHVYFVHSYR---ATPSD--EN---KDW-VLATC--NYGGEFIAS 179
Query: 261 VEH-KVYPFAGIQFHPEK 277
V V+ +QFHPEK
Sbjct: 180 VRKGNVH---AVQFHPEK 194
>gnl|CDD|235140 PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase I;
Provisional.
Length = 219
Score = 38.9 bits (92), Expect = 0.002
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 13/62 (20%)
Query: 115 LGQVNGVLIPGGGASF-YADDGYAKAGAM-----IYKIAKEFNENRDYFPIMGICLGFQL 168
L V+ V++PGG F Y D Y + GA+ I K KEF E P++GIC GFQ+
Sbjct: 39 LDGVDAVVLPGG---FSYGD--YLRCGAIAAFSPIMKAVKEFAE--KGKPVLGICNGFQI 91
Query: 169 LL 170
L
Sbjct: 92 LT 93
>gnl|CDD|223586 COG0512, PabA, Anthranilate/para-aminobenzoate synthases component
II [Amino acid transport and metabolism / Coenzyme
metabolism].
Length = 191
Score = 38.3 bits (90), Expect = 0.002
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 43/130 (33%)
Query: 158 PIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELAT 217
PI+G+CLG Q + + F + ++ P+H T
Sbjct: 76 PILGVCLGHQAI-------------AEAFGGKVV------------RAKEPMHG----KT 106
Query: 218 SHITHNWH-MWCITPSNFT----------DNGLAKEWKVLSTNSNNRGLKFISSVEHKVY 266
S ITH+ ++ P+ FT L +E +V + + + I +V HK
Sbjct: 107 SIITHDGSGLFAGLPNPFTVTRYHSLVVDPETLPEELEVTAESEDG---GVIMAVRHKKL 163
Query: 267 PFAGIQFHPE 276
P G+QFHPE
Sbjct: 164 PIYGVQFHPE 173
>gnl|CDD|223579 COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino
acid transport and metabolism / Nucleotide transport and
metabolism].
Length = 368
Score = 39.1 bits (92), Expect = 0.003
Identities = 39/153 (25%), Positives = 55/153 (35%), Gaps = 55/153 (35%)
Query: 158 PIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL----EFMPSFRQSLLYSRAPIHVLQ 213
PI GICLG QLL LAL M F R H ++
Sbjct: 252 PIFGICLGHQLL-------------------ALALGAKTYKMK-FGH-----RGANHPVK 286
Query: 214 ELATSHI---THNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG 270
+L T + + N H + + + L + KV N N+ + + HK P
Sbjct: 287 DLDTGRVYITSQN-HGYAVDEDS-----LVETLKVTHVNLND---GTVEGIRHKDLPAFS 337
Query: 271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFD 303
+Q+HPE + PH + RY FD
Sbjct: 338 VQYHPEASP--------GPH------DTRYLFD 356
>gnl|CDD|153219 cd01748, GATase1_IGP_Synthase, Type 1 glutamine amidotransferase
(GATase1) domain found in imidazole glycerol phosphate
synthase (IGPS). Type 1 glutamine amidotransferase
(GATase1) domain found in imidazole glycerol phosphate
synthase (IGPS). IGPS incorporates ammonia derived from
glutamine into
N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-
carboxamide ribonucleotide (PRFAR) to form
5'-(5-aminoimidazole-4-carboxamide) ribonucleotide
(AICAR) and imidazole glycerol phosphate (IGP). The
glutamine amidotransferase domain generates the ammonia
nucleophile which is channeled from the glutaminase
active site to the PRFAR active site. IGPS belong to the
triad family of amidotransferases having a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site.
Length = 198
Score = 37.9 bits (89), Expect = 0.003
Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 29/131 (22%)
Query: 158 PIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSL-------LYSRAPIH 210
P +GICLG QLL + S+ E T+ + F S + L
Sbjct: 73 PFLGICLGMQLL-FESSEEGGG-TKGLGLIPGKVVRFPASEGLKVPHMGWNQLEITKESP 130
Query: 211 VLQELATSHITHNW----HMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVY 266
+ + + ++ H + P + ++ + +T+ G KF ++VE
Sbjct: 131 LFKGI----PDGSYFYFVHSYYAPPDD-------PDYILATTD---YGGKFPAAVEKD-- 174
Query: 267 PFAGIQFHPEK 277
G QFHPEK
Sbjct: 175 NIFGTQFHPEK 185
>gnl|CDD|235882 PRK06895, PRK06895, putative anthranilate synthase component II;
Provisional.
Length = 190
Score = 37.8 bits (88), Expect = 0.003
Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 27/121 (22%)
Query: 159 IMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFR---QSLLYSRAPIHVLQEL 215
I+G+CLG Q L C + L + + R Q L R+ + L
Sbjct: 75 ILGVCLGHQTL---------------CEFFGGELYNLNNVRHGQQRPLKVRSNSPLFDGL 119
Query: 216 ATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHP 275
+H W ++ NF ++ + N + +++HK P G+QFHP
Sbjct: 120 PEEFNIGLYHSWAVSEENFPT-----PLEITAVCDEN----VVMAMQHKTLPIYGVQFHP 170
Query: 276 E 276
E
Sbjct: 171 E 171
>gnl|CDD|153217 cd01746, GATase1_CTP_Synthase, Type 1 glutamine amidotransferase
(GATase1) domain found in Cytidine Triphosphate
Synthetase. Type 1 glutamine amidotransferase (GATase1)
domain found in Cytidine Triphosphate Synthetase (CTP).
CTP is involved in pyrimidine
ribonucleotide/ribonucleoside metabolism. CTPs produce
CTP from UTP and glutamine and regulate intracellular
CTP levels through interactions with four ribonucleotide
triphosphates. The enzyme exists as a dimer of identical
chains that aggregates as a tetramer. CTP is derived
form UTP in three separate steps involving two active
sites. In one active site, the UTP O4 oxygen is
activated by Mg-ATP-dependent phosphorylation, followed
by displacement of the resulting 4-phosphate moiety by
ammonia. At a separate site, ammonia is generated via
rate limiting glutamine hydrolysis (glutaminase)
activity. A gated channel that spans between the
glutamine hydrolysis and amidoligase active sites
provides a path for ammonia diffusion. CTPs belong to
the triad family of amidotransferases having a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site.
Length = 235
Score = 36.8 bits (86), Expect = 0.010
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 110 KIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQL 168
E+ L +G+L+PGG G I K EN P +GICLG QL
Sbjct: 48 NAEEALKGADGILVPGGF-------GIRGVEGKI-LAIKYARENN--IPFLGICLGMQL 96
>gnl|CDD|233378 TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synthase, small
subunit. This model represents the whole of the small
chain of the glutamine-dependent form (EC 6.3.5.5) of
carbamoyl phosphate synthase, CPSase II. The C-terminal
domain has glutamine amidotransferase activity. Note
that the sequence from the mammalian urea cycle form has
lost the active site Cys, resulting in an
ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases
of pyrimidine biosynthesis, arginine biosynthesis, and
the urea cycle may be encoded by one or by several
genes, depending on the species [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 358
Score = 36.8 bits (86), Expect = 0.011
Identities = 37/153 (24%), Positives = 55/153 (35%), Gaps = 52/153 (33%)
Query: 157 FPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALE---FMPSFRQSLLYSRAPIHVLQ 213
PI GICLG QLL LA + F R H ++
Sbjct: 244 IPIFGICLGHQLL-------------------ALAFGAKTYKMKFGH-----RGGNHPVK 279
Query: 214 ELATSHI---THNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG 270
+L T + + N H + + P D+ A + +V N N+ + + HK P
Sbjct: 280 DLITGRVEITSQN-HGYAVDP----DSLPAGDLEVTHVNLND---GTVEGIRHKDLPVFS 331
Query: 271 IQFHPEKNAYEWKLTQDNPHTRIAIENARYFFD 303
+Q+HPE + PH + Y FD
Sbjct: 332 VQYHPEASP--------GPH------DTEYLFD 350
>gnl|CDD|223578 COG0504, PyrG, CTP synthase (UTP-ammonia lyase) [Nucleotide
transport and metabolism].
Length = 533
Score = 37.1 bits (87), Expect = 0.011
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQL 168
++ V+G+L+PGG F GY I + EN P +GICLG QL
Sbjct: 337 AAELEKLVDGILVPGG---F----GYRGVEGKI-AAIRYARENN--IPFLGICLGMQL 384
>gnl|CDD|234614 PRK00074, guaA, GMP synthase; Reviewed.
Length = 511
Score = 37.3 bits (88), Expect = 0.011
Identities = 44/203 (21%), Positives = 75/203 (36%), Gaps = 69/203 (33%)
Query: 93 IAKEVSYREL----DIWQSLLKIEKILG-QVNGVLIPGGGASFYADDGYAKAGAMIYKIA 147
IA+ V REL +I + E+I G+++ GG AS Y + +A I+++
Sbjct: 19 IARRV--RELGVYSEIVPYDISAEEIRAFNPKGIILSGGPASVYEEGAP-RADPEIFELG 75
Query: 148 KEFNENRDYFPIMGICLGFQLLLYT------SNNENELRTRCDCFYENLALEFMPSFRQS 201
P++GIC G QL+ + + E
Sbjct: 76 V---------PVLGICYGMQLMAHQLGGKVERAGKRE----------------------- 103
Query: 202 LLYSRAPIHVLQELA-TSHITHNWHMW-----CIT--PSNFTDNGLAKEWKVLSTNSNNR 253
Y RA + V + + +W +T P F KV+++ N
Sbjct: 104 --YGRAELEVDNDSPLFKGLPEEQDVWMSHGDKVTELPEGF---------KVIASTENCP 152
Query: 254 GLKFISSVEHKVYPFAGIQFHPE 276
I+++ ++ F G+QFHPE
Sbjct: 153 ----IAAIANEERKFYGVQFHPE 171
>gnl|CDD|237289 PRK13143, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 200
Score = 36.0 bits (84), Expect = 0.013
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLY 171
E+IL +G+++PG GA F + I + + P +GICLG QLL
Sbjct: 34 EEILD-ADGIVLPGVGA-F--GAAMENLSPLRDVILEAARSGK---PFLGICLGMQLLFE 86
Query: 172 TS 173
+S
Sbjct: 87 SS 88
Score = 29.1 bits (66), Expect = 3.0
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
Query: 254 GLKFISSVEHK-VYPFAGIQFHPEK 277
G++F ++V + V+ G QFHPEK
Sbjct: 161 GIEFPAAVCNDNVF---GTQFHPEK 182
>gnl|CDD|233601 TIGR01855, IMP_synth_hisH, imidazole glycerol phosphate synthase,
glutamine amidotransferase subunit. This model
represents the glutamine amidotransferase subunit (or
domain, in eukaryotic systems) of imidazole glycerol
phosphate synthase. This subunit catalyzes step 5 of
histidine biosynthesis from PRPP. The other subunit, the
cyclase, catalyzes step 6 [Amino acid biosynthesis,
Histidine family].
Length = 196
Score = 36.1 bits (84), Expect = 0.013
Identities = 37/179 (20%), Positives = 64/179 (35%), Gaps = 41/179 (22%)
Query: 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNEN-------RDYFPIMGICL 164
K + +++PG GA A+ +E + R P++GICL
Sbjct: 31 SKEAELADKLILPGVGA---FGAAMARL--------RENGLDLFVELVVRLGKPVLGICL 79
Query: 165 GFQLLLYTSNNENELRTRCDCFYEN---LALEFMPSFRQSLLYSRAPIHVLQEL---ATS 218
G QL L+ + E N L +P + ++ +L + A
Sbjct: 80 GMQL-LFERSEEGGGVPGLGLIKGNVVKLEARKVPHMGWNEVHPVKESPLLNGIDEGAYF 138
Query: 219 HITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEK 277
+ H+++ C +E + + G KF ++V+ G QFHPEK
Sbjct: 139 YFVHSYYAVC-----------EEEAVLAYAD---YGEKFPAAVQKGNI--FGTQFHPEK 181
>gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha
proteobacterial clade. This model represents a small
clade of anthranilate synthases from alpha
proteobacteria and Nostoc (a cyanobacterium). This
enzyme is the first step in the pathway for the
biosynthesis of tryprophan from chorismate [Amino acid
biosynthesis, Aromatic amino acid family].
Length = 717
Score = 36.8 bits (85), Expect = 0.019
Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 23/120 (19%)
Query: 158 PIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSF-RQSLLYSRAPIHVLQELA 216
P+ G+CLG Q ++ + F L + P + S + P + L
Sbjct: 590 PVFGVCLGLQGMV-------------EAFGGALDVLPEPVHGKASRIRVLGPDALFAGLP 636
Query: 217 TSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPE 276
+H L E V T + GL I ++EH+ P A +QFHPE
Sbjct: 637 ERLTVGRYHSLFARRDR-----LPAELTV--TAESADGL--IMAIEHRRLPLAAVQFHPE 687
>gnl|CDD|215186 PLN02327, PLN02327, CTP synthase.
Length = 557
Score = 35.8 bits (83), Expect = 0.031
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQL 168
K+L +G+L+PGG + D G I AK EN+ P +GICLG Q+
Sbjct: 358 KLLKGADGILVPGG----FGDRG---VEGKILA-AKYARENK--VPYLGICLGMQI 403
>gnl|CDD|235437 PRK05380, pyrG, CTP synthetase; Validated.
Length = 533
Score = 35.4 bits (83), Expect = 0.044
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 22/64 (34%)
Query: 111 IEKILGQVNGVLIPGG----GASFYADDGYAKAGAMIYKI--AKEFNENRDYFPIMGICL 164
+ ++L V+G+L+PGG G +G KI + EN P +GICL
Sbjct: 337 VAELLKGVDGILVPGGFGERGI-----EG---------KILAIRYARENN--IPFLGICL 380
Query: 165 GFQL 168
G QL
Sbjct: 381 GMQL 384
>gnl|CDD|222184 pfam13507, GATase_5, CobB/CobQ-like glutamine amidotransferase
domain. This family captures members that are not found
in pfam00310, pfam07685 and pfam13230.
Length = 259
Score = 34.7 bits (81), Expect = 0.053
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
Query: 115 LGQVNGVLIPGGGASF-YADD-GYAK--AGAMIY--KIAKEFNE---NRDYFPIMGICLG 165
L G++ PGG F Y D G K A ++++ K+ F RD F +GIC G
Sbjct: 44 LDDFQGLVAPGG---FSYGDVLGSGKGWAKSILFNPKLRDAFEAFFNRRDTF-SLGICNG 99
Query: 166 FQLL 169
Q L
Sbjct: 100 CQAL 103
>gnl|CDD|237764 PRK14607, PRK14607, bifunctional glutamine
amidotransferase/anthranilate phosphoribosyltransferase;
Provisional.
Length = 534
Score = 34.7 bits (80), Expect = 0.063
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 258 ISSVEHKVYPFAGIQFHPE 276
I + HK +P G+QFHPE
Sbjct: 153 IMGIRHKEHPIFGVQFHPE 171
>gnl|CDD|183877 PRK13170, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 196
Score = 33.7 bits (78), Expect = 0.070
Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 34/134 (25%)
Query: 158 PIMGICLGFQLLLYTSNNENELRTRCDCFYENLAL-----EFMPSFRQSL-------LYS 205
P++GICLG QLL S E DC L + + M F L +
Sbjct: 72 PVLGICLGMQLLGERS----EESGGVDC----LGIIDGPVKKMTDFGLPLPHMGWNQVTP 123
Query: 206 RAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKV 265
+A + Q + + H + + + +T +A N G F ++++
Sbjct: 124 QAGHPLFQGIEDGSYFYFVHSYAMPVNEYT---IA---------QCNYGEPFSAAIQKD- 170
Query: 266 YPFAGIQFHPEKNA 279
F G+QFHPE++
Sbjct: 171 -NFFGVQFHPERSG 183
>gnl|CDD|171876 PRK13152, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 201
Score = 34.0 bits (78), Expect = 0.073
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 24/129 (18%)
Query: 158 PIMGICLGFQLLLYTSNNENE------LRTRCDCFYENLALEFMPSFRQSLLYSRA-PIH 210
PI+GICLG QL L + F E+L L+ L + P++
Sbjct: 75 PILGICLGMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGWNELEILKQSPLY 134
Query: 211 V-LQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFA 269
+ E + + H++++ C D + + G KF++S++ K FA
Sbjct: 135 QGIPEKSDFYFVHSFYVKC------KDEFV--------SAKAQYGHKFVASLQ-KDNIFA 179
Query: 270 GIQFHPEKN 278
QFHPEK+
Sbjct: 180 -TQFHPEKS 187
>gnl|CDD|237288 PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 205
Score = 33.6 bits (78), Expect = 0.079
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 120 GVLIPGGGASFYADDGYA--KAGAMIYKIAKEFNENRDYFPIMGICLGFQLLL 170
GV++PG GA D A + + I + + P++GICLG QLL
Sbjct: 40 GVILPGVGA---FPDAMANLRERGLDEVIKEAVASGK---PLLGICLGMQLLF 86
Score = 32.4 bits (75), Expect = 0.20
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
Query: 254 GLKFISSVEHK-VYPFAGIQFHPEK 277
G++F ++V V+ G QFHPEK
Sbjct: 165 GVEFPAAVGKDNVF---GAQFHPEK 186
>gnl|CDD|153212 cd01741, GATase1_1, Subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. This group
contains a subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. GATase
activity catalyses the transfer of ammonia from the
amide side chain of glutamine to an acceptor substrate.
Glutamine amidotransferases (GATase) includes the triad
family of amidotransferases which have a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site. In this subgroup this triad is conserved. GATase
activity can be found in a range of biosynthetic
enzymes, including: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase ,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. Glutamine
amidotransferase (GATase) domains can occur either as
single polypeptides, as in glutamine amidotransferases,
or as domains in a much larger multifunctional synthase
protein, such as CPSase.
Length = 188
Score = 33.8 bits (78), Expect = 0.079
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 14/60 (23%)
Query: 115 LGQVNGVLIPGGGAS-FYADDGYAKAGAMIYKIAKEFNENRD----YFPIMGICLGFQLL 169
L +G++I GG S D + + K R P++GICLG QLL
Sbjct: 44 LDDYDGLVILGGPMSVDEDDYPW---------LKKLKELIRQALAAGKPVLGICLGHQLL 94
>gnl|CDD|237429 PRK13566, PRK13566, anthranilate synthase; Provisional.
Length = 720
Score = 34.5 bits (80), Expect = 0.090
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 258 ISSVEHKVYPFAGIQFHPE 276
I ++EHK P A +QFHPE
Sbjct: 679 IMAIEHKTLPVAAVQFHPE 697
>gnl|CDD|234913 PRK01175, PRK01175, phosphoribosylformylglycinamidine synthase I;
Provisional.
Length = 261
Score = 33.6 bits (77), Expect = 0.10
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 10/64 (15%)
Query: 113 KILGQVNGVLIPGGGASFYADDGYAKAGAM----IYKIA-KEFNENRDY-FPIMGICLGF 166
K + + ++IPGG F A D Y +AGA+ + + K+ E D +PI+GIC GF
Sbjct: 44 KSVSDYDCLVIPGG---FSAGD-YIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGF 99
Query: 167 QLLL 170
Q+L+
Sbjct: 100 QVLV 103
>gnl|CDD|183784 PRK12838, PRK12838, carbamoyl phosphate synthase small subunit;
Reviewed.
Length = 354
Score = 33.7 bits (78), Expect = 0.11
Identities = 30/124 (24%), Positives = 44/124 (35%), Gaps = 34/124 (27%)
Query: 157 FPIMGICLGFQLL-LYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQEL 215
+PI+GICLG QL+ L E +P R H + +L
Sbjct: 238 YPILGICLGHQLIALAL----------------GADTEKLP------FGHRGANHPVIDL 275
Query: 216 ATSHI---THNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQ 272
T + + N H + + + V N N+ I + HK P +Q
Sbjct: 276 TTGRVWMTSQN-HGYVVDEDSLDGT----PLSVRFFNVNDGS---IEGLRHKKKPVLSVQ 327
Query: 273 FHPE 276
FHPE
Sbjct: 328 FHPE 331
>gnl|CDD|214389 CHL00188, hisH, imidazole glycerol phosphate synthase subunit hisH;
Provisional.
Length = 210
Score = 33.3 bits (76), Expect = 0.12
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLY 171
E L QV+ +++PG G+ A K G +I I K E P +GICLG LL
Sbjct: 34 ESELAQVHALVLPGVGSFDLAMKKLEKKG-LITPIKKWIAEGN---PFIGICLGLHLLFE 89
Query: 172 TSNNENE 178
TS E
Sbjct: 90 TSEEGKE 96
>gnl|CDD|223995 COG1069, AraB, Ribulose kinase [Energy production and conversion].
Length = 544
Score = 33.8 bits (78), Expect = 0.14
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 257 FISSVEHKVYPFAGIQFHPE-KNAYEWKLTQDNPHTRIAIENARYFF---DWLVSQASGS 312
I++ H V + G + PE L ++ P E A + F DWL + +GS
Sbjct: 121 EINATCHPVLDYYGGKISPEMMIPKLMWLKREAPAVW---ERAAHIFDLADWLTWKLTGS 177
>gnl|CDD|130916 TIGR01857, FGAM-synthase, phosphoribosylformylglycinamidine synthase,
clade II. This model represents a single-molecule form
of phosphoribosylformylglycinamidine synthase, also
called FGAM synthase, an enzyme of purine de novo
biosynthesis. This model represents a second clade of
these enzymes found in Clostridia, Bifidobacteria and
Streptococcus species. This enzyme performs the fourth
step in IMP biosynthesis (the precursor of all purines)
from PRPP [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 1239
Score = 33.3 bits (76), Expect = 0.21
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 48 PIFIGNPEAYYRKILGQVNGVLI---PGGGASFYADDGYAKAGAMIYKIAKEVSYRELD- 103
P + K + V+I PG + + + + K GA V +R L+
Sbjct: 960 PAVASEKKVIKAKEKVEKPRVVIPVFPGTNSEYDSAKAFEKEGAE----VNLVIFRNLNE 1015
Query: 104 --IWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFP--- 158
+ +S+ + + + +++PGG ++ DG AK A I + K +
Sbjct: 1016 EALVESVETMVDEIDKSQILMLPGGFSAGDEPDGSAKFIAAILRNPKVRVAIDSFLARDG 1075
Query: 159 -IMGICLGFQLLL 170
I+GIC GFQ L+
Sbjct: 1076 LILGICNGFQALV 1088
>gnl|CDD|180178 PRK05637, PRK05637, anthranilate synthase component II;
Provisional.
Length = 208
Score = 32.5 bits (74), Expect = 0.22
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 135 GY-AKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLL 170
G+ AG M+ I + + P++GICLGFQ LL
Sbjct: 55 GHPRDAGNMMALIDRTLGQ----IPLLGICLGFQALL 87
>gnl|CDD|235552 PRK05670, PRK05670, anthranilate synthase component II;
Provisional.
Length = 189
Score = 32.0 bits (74), Expect = 0.28
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 258 ISSVEHKVYPFAGIQFHPE 276
I V HK P G+QFHPE
Sbjct: 152 IMGVRHKELPIYGVQFHPE 170
Score = 28.9 bits (66), Expect = 2.9
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 139 AGAMIYKIAKEFNENRDYFPIMGICLGFQ 167
AG + I +EF PI+G+CLG Q
Sbjct: 59 AGISLELI-REFAGK---VPILGVCLGHQ 83
>gnl|CDD|179112 PRK00758, PRK00758, GMP synthase subunit A; Validated.
Length = 184
Score = 31.7 bits (73), Expect = 0.31
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 13/59 (22%)
Query: 111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLL 169
+E+I +G LI GG +AG + KE + PI+GICLG QL+
Sbjct: 35 VEEIKAFEDG-LILSGGPDI------ERAGN-CPEYLKELD-----VPILGICLGHQLI 80
>gnl|CDD|237139 PRK12564, PRK12564, carbamoyl phosphate synthase small subunit;
Reviewed.
Length = 360
Score = 31.6 bits (73), Expect = 0.52
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 158 PIMGICLGFQLL 169
PI GICLG QLL
Sbjct: 250 PIFGICLGHQLL 261
>gnl|CDD|153221 cd01750, GATase1_CobQ, Type 1 glutamine amidotransferase (GATase1)
domain found in Cobyric Acid Synthase (CobQ). Type 1
glutamine amidotransferase (GATase1) domain found in
Cobyric Acid Synthase (CobQ). CobQ plays a role in
cobalamin biosythesis. CobQ catalyses amidations at
positions B, D, E, and G on adenosylcobyrinic
A,C-diamide in the biosynthesis of cobalamin. CobQ
belongs to the triad family of amidotransferases. Two
of the three residues of the catalytic triad that are
involved in glutamine binding, hydrolysis and transfer
of the resulting ammonia to the acceptor substrate in
other triad aminodotransferases are conserved in CobQ.
Length = 194
Score = 30.7 bits (70), Expect = 0.89
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLL 169
LG + +++PG + D + + + I P++GIC G+Q+L
Sbjct: 35 LGDADLIILPGSKDTI-QDLAWLRKRGLAEAIKNYARAGG---PVLGICGGYQML 85
>gnl|CDD|144398 pfam00786, PBD, P21-Rho-binding domain. Small domains that bind
Cdc42p- and/or Rho-like small GTPases. Also known as the
Cdc42/Rac interactive binding (CRIB).
Length = 59
Score = 28.2 bits (63), Expect = 0.89
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 12/52 (23%)
Query: 219 HITH-NWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFA 269
H+ H + GL EW+ L +S IS E K P A
Sbjct: 10 HVVHVGFD-----GQTGFFTGLPPEWEKLLPSSG------ISKPEQKKNPQA 50
>gnl|CDD|180590 PRK06490, PRK06490, glutamine amidotransferase; Provisional.
Length = 239
Score = 30.7 bits (70), Expect = 0.96
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 120 GVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLL 169
G +I GG S A+D I I+ EN+ P +GICLG Q+L
Sbjct: 55 GAVIFGGPMS--ANDPDDFIRREIDWISVPLKENK---PFLGICLGAQML 99
>gnl|CDD|183878 PRK13181, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 199
Score = 29.8 bits (68), Expect = 1.3
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 121 VLIPGGGASFYADDGYA--KAGAMIYKIAKEFNENRDYFPIMGICLGFQLLL 170
V++PG GA + + + + + + P++GICLG QLL
Sbjct: 41 VILPGVGA---FGQAMRSLRESGLDEALKEHVEKKQ---PVLGICLGMQLLF 86
Score = 27.9 bits (63), Expect = 6.7
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 252 NRGLKFISSVEHK-VYPFAGIQFHPEK 277
G+ F S+V +Y +QFHPEK
Sbjct: 161 EYGVPFCSAVAKDNIY---AVQFHPEK 184
>gnl|CDD|219513 pfam07685, GATase_3, CobB/CobQ-like glutamine amidotransferase
domain.
Length = 157
Score = 29.5 bits (67), Expect = 1.3
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLL 169
+ + G + V++PGG D + + + +E E PI+GIC G+Q+L
Sbjct: 2 DALPGDADLVILPGG-KPTIQDLALLRNSGLDEAL-REHAEAGG--PILGICGGYQML 55
>gnl|CDD|177969 PLN02335, PLN02335, anthranilate synthase.
Length = 222
Score = 30.2 bits (68), Expect = 1.4
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 258 ISSVEHKVYP-FAGIQFHPE 276
I + H+ Y G+QFHPE
Sbjct: 176 IMAARHRKYKHIQGVQFHPE 195
>gnl|CDD|182484 PRK10470, PRK10470, ribosome hibernation promoting factor HPF;
Provisional.
Length = 95
Score = 28.7 bits (64), Expect = 1.5
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 108 LLKIEKILGQVNGVLIPGGG---ASFYADDGYAKAGAMIYKIAKEFNENRD 155
+LK+EK+ + L GG AS D YA +I K+A++ +++D
Sbjct: 40 VLKVEKVTHISDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKD 90
>gnl|CDD|237290 PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 209
Score = 29.8 bits (68), Expect = 1.6
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 13/56 (23%)
Query: 120 GVLIPGGGASFYAD-----DGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLL 170
V++PG GA +AD A+I + R P +GIC+G QLL
Sbjct: 44 RVVLPGVGA--FADCMRGLRAVGLGEAVIEAVLAA---GR---PFLGICVGMQLLF 91
Score = 27.8 bits (63), Expect = 7.3
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 254 GLKFISSVEHKVYPFAGIQFHPEKNA 279
G F ++V QFHPEK+
Sbjct: 171 GGPFTAAVARD--NLFATQFHPEKSQ 194
>gnl|CDD|181066 PRK07649, PRK07649, para-aminobenzoate/anthranilate synthase
glutamine amidotransferase component II; Validated.
Length = 195
Score = 29.8 bits (67), Expect = 1.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 258 ISSVEHKVYPFAGIQFHPE 276
I ++ HK P G+QFHPE
Sbjct: 152 IMAIRHKTLPIEGVQFHPE 170
>gnl|CDD|240629 cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and
catalytic domains. Transhydrogenases found in bacterial
and inner mitochondrial membranes link
NAD(P)(H)-dependent redox reactions to proton
translocation. The energy of the proton electrochemical
gradient (delta-p), generated by the respiratory
electron transport chain, is consumed by
transhydrogenase in NAD(P)+ reduction. Transhydrogenase
is likely involved in the regulation of the citric acid
cycle. Rubrum transhydrogenase has 3 components, dI,
dII, and dIII. dII spans the membrane while dI and dIII
protrude on the cytoplasmic/matrix side. DI contains 2
domains in Rossmann-like folds, linked by a long alpha
helix, and contains a NAD binding site. Two dI
polypeptides (represented in this sub-family)
spontaneously form a heterotrimer with dIII in the
absence of dII. In the heterotrimer, both dI chains may
bind NAD, but only one is well-ordered. dIII also binds
a well-ordered NADP, but in a different orientation than
a classical Rossmann domain.
Length = 363
Score = 30.1 bits (69), Expect = 1.9
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
Query: 68 VLI-PGGG-ASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI 111
VL+ G G A+ ++D+ Y +AGA I A+E + DI +LK+
Sbjct: 33 VLVESGAGEAAGFSDEAYEEAGAEIVSDAEE--LAQADI---VLKV 73
Score = 29.3 bits (67), Expect = 3.5
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 121 VLI-PGGG-ASFYADDGYAKAGAMIYKIAKEF 150
VL+ G G A+ ++D+ Y +AGA I A+E
Sbjct: 33 VLVESGAGEAAGFSDEAYEEAGAEIVSDAEEL 64
>gnl|CDD|233027 TIGR00566, trpG_papA, glutamine amidotransferase of anthranilate
synthase or aminodeoxychorismate synthase. This model
describes the glutamine amidotransferase domain or
peptide of the tryptophan-biosynthetic pathway enzyme
anthranilate synthase or of the folate biosynthetic
pathway enzyme para-aminobenzoate synthase. In at least
one case, a single polypeptide from Bacillus subtilis
was shown to have both functions. This model covers a
subset of the sequences described by the PFAM model
GATase.
Length = 188
Score = 29.4 bits (66), Expect = 1.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 258 ISSVEHKVYPFAGIQFHPE 276
I ++ H+ P G+QFHPE
Sbjct: 153 IMAIRHRDLPLEGVQFHPE 171
>gnl|CDD|215557 PLN03069, PLN03069, magnesiumprotoporphyrin-IX chelatase subunit H;
Provisional.
Length = 1220
Score = 30.1 bits (68), Expect = 1.9
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 10/48 (20%)
Query: 7 PIIGILTQEPCL--GVDKHFADFKSYIPASYVKAVEASGARVAPIFIG 52
P++G++ Q + G D H+ + V +EA GA+V PIF G
Sbjct: 267 PVVGLVLQRSHIVTGDDGHYV--------AVVMELEARGAKVVPIFAG 306
>gnl|CDD|235919 PRK07053, PRK07053, glutamine amidotransferase; Provisional.
Length = 234
Score = 29.5 bits (67), Expect = 1.9
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 121 VLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQL 168
+++ GG Y D+ Y I + + P +GICLG QL
Sbjct: 51 LVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGL---PTLGICLGAQL 95
>gnl|CDD|180689 PRK06774, PRK06774, para-aminobenzoate synthase component II;
Provisional.
Length = 191
Score = 29.1 bits (65), Expect = 2.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 258 ISSVEHKVYPFAGIQFHPE 276
I + H+ P G+QFHPE
Sbjct: 156 IMGIRHRTLPLEGVQFHPE 174
>gnl|CDD|183101 PRK11366, puuD, gamma-glutamyl-gamma-aminobutyrate hydrolase;
Provisional.
Length = 254
Score = 29.1 bits (65), Expect = 2.7
Identities = 11/22 (50%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Query: 266 YPFA-GIQFHPEKNAYEWKLTQ 286
+PFA G+Q+HPE N+ E+ L++
Sbjct: 213 HPFALGVQWHPEWNSSEYALSR 234
>gnl|CDD|181107 PRK07765, PRK07765, para-aminobenzoate synthase component II;
Provisional.
Length = 214
Score = 29.2 bits (66), Expect = 2.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 258 ISSVEHKVYPFAGIQFHPE 276
I +V H+ P G+QFHPE
Sbjct: 156 IMAVRHRELPIHGVQFHPE 174
>gnl|CDD|119380 cd06418, GH25_BacA-like, BacA is a bacterial lysin from
Enterococcus faecalis that degrades bacterial cell walls
by catalyzing the hydrolysis of 1,4-beta-linkages
between N-acetylmuramic acid and N-acetyl-D-glucosamine
residues. BacA is homologous to the YbfG and YkuG
lysins of Bacillus subtilis. BacA has a C-terminal
catalytic glycosyl hydrolase family 25 (GH25) domain and
an N-terminal peptidoglycan-binding domain comprised of
three alpha helices which is similar to a domain found
in matrixins.
Length = 212
Score = 28.8 bits (65), Expect = 3.7
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 30 YIPASYVKAVEASGARVAPIFIGN-PEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGA 88
+ A+ ++ + A+G +V PI+ G Y G GV + G+ G
Sbjct: 52 NLTATELETITAAGLKVFPIYQGGGYSLDYF---GYEQGVKDARDAVAAARALGF-PPGT 107
Query: 89 MIYKIAKEVSYRELDI 104
+IY A + + ++
Sbjct: 108 IIY-FAVDFDALDDEV 122
>gnl|CDD|222557 pfam14124, DUF4291, Domain of unknown function (DUF4291). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 190 and
214 amino acids in length. There are two conserved
sequence motifs: VYQAY and RMTW.
Length = 181
Score = 28.3 bits (64), Expect = 3.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 291 TRI-AIENARYFFDWLVSQASGSHHS---FETEEEEKAAL 326
RI AI R F+W + QA SH+ + +EE + AL
Sbjct: 65 ERILAIRITREGFEWALRQAVLSHYDPGVYPDQEEWQQAL 104
>gnl|CDD|176992 CHL00051, rps12, ribosomal protein S12.
Length = 123
Score = 27.7 bits (62), Expect = 4.2
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 333 EYTAYIPGIGY 343
E TAYIPGIG+
Sbjct: 62 EITAYIPGIGH 72
>gnl|CDD|222940 PHA02880, PHA02880, hypothetical protein; Provisional.
Length = 189
Score = 28.3 bits (63), Expect = 4.7
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 103 DIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGI 162
DI L KI+ ++ + + F + D Y K +I I EF + D+ P + +
Sbjct: 105 DILSILKKIQDVISNNDIEI-----KKFNSVDYYEKEN-IINTIIDEFKKRGDFEPYLFL 158
Query: 163 CLGFQLLLY-TSNNENELRTRCDCFYE 188
Q L S E LR + D F
Sbjct: 159 ----QTLERQYSQIEGNLRGKNDYFLN 181
>gnl|CDD|181566 PRK08857, PRK08857, para-aminobenzoate synthase component II;
Provisional.
Length = 193
Score = 28.3 bits (63), Expect = 4.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 258 ISSVEHKVYPFAGIQFHPE 276
I +HK P +QFHPE
Sbjct: 157 IMGFQHKTLPIEAVQFHPE 175
>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate
1-decarboxylase. This enzyme is proposed here to be a
form of aspartate 1-decarboxylase, pyridoxal-dependent,
that represents a non-orthologous displacement to the
more widely distributed pyruvoyl-dependent form
(TIGR00223). Aspartate 1-decarboxylase makes
beta-alanine, used usually in pathothenate biosynthesis,
by decarboxylation from asparatate. A number of species
with the PanB and PanC enzymes, however, lack PanD. This
protein family occurs in a number of Proteobacteria that
lack PanD. This enzyme family appears to be a
pyridoxal-dependent enzyme (see pfam00282). The family
was identified by Partial Phylogenetic Profiling;
members in Geobacter sulfurreducens, G. metallireducens,
and Pseudoalteromonas atlantica are clustered with the
genes for PanB and PanC. We suggest the gene symbol panP
(panthothenate biosynthesis enzyme, Pyridoxal-dependent)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 522
Score = 28.9 bits (65), Expect = 5.1
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 294 AIENARYFFDWLVSQASGSHHSFE-TEEEEKAALIYNYCPE 333
+IE A+YF D L+ Q FE E E L Y Y PE
Sbjct: 405 SIEKAKYFAD-LIQQ----QPDFELVTEPELCLLTYRYVPE 440
>gnl|CDD|224956 COG2045, COG2045, Phosphosulfolactate phosphohydrolase and related
enzymes [Coenzyme metabolism / General function
prediction only].
Length = 230
Score = 28.1 bits (63), Expect = 6.7
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 41 ASGARVAPIFIG---NPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMI 90
A+ I IG N A + + +++P G +A + + AGA+
Sbjct: 105 LLRAKSEHILIGSLVNASAVAEALKELEDVLVVPAGRNGRFALEDFLCAGAIA 157
>gnl|CDD|129323 TIGR00219, mreC, rod shape-determining protein MreC. MreC (murein
formation C) is involved in the rod shape determination
in E. coli, and more generally in cell shape
determination of bacteria whether or not they are
rod-shaped. Cells defective in MreC are round. Species
with MreC include many of the Proteobacteria,
Gram-positives, and spirochetes [Cell envelope,
Biosynthesis and degradation of murein sacculus and
peptidoglycan].
Length = 283
Score = 27.9 bits (62), Expect = 7.4
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 91 YKIAKEVSYRELDIWQSLLKIEKILGQVNGV 121
YKI+ EV Y D + + + I K G +GV
Sbjct: 116 YKISAEVIYLNYDNYSTQVVINK--GFNDGV 144
>gnl|CDD|129609 TIGR00518, alaDH, alanine dehydrogenase. The family of known
L-alanine dehydrogenases includes representatives from
the Proteobacteria, Firmicutes, and Cyanobacteria, all
with about 50 % identity or better. An outlier to this
group in both sequence and gap pattern is the homolog
from Helicobacter pylori, an epsilon division
Proteobacteria, which must be considered a putative
alanine dehydrogenase. Related proteins include
saccharopine dehydrogenase and the N-terminal half of
the NAD(P) transhydrogenase alpha subunit. All of these
related proteins bind NAD and/or NADP [Energy
metabolism, Amino acids and amines].
Length = 370
Score = 28.0 bits (62), Expect = 8.0
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 59 RKILGQVNGVLIPGGGA--SFYADDGYAKAGAMIYKIAKEVSYREL 102
++ + + VL+ G S + D Y AGA + AK+V EL
Sbjct: 24 AELTSRGHEVLVEAGAGEGSGFTDAAYKAAGAELVATAKQVWDAEL 69
>gnl|CDD|223758 COG0686, Ald, Alanine dehydrogenase [Amino acid transport and
metabolism].
Length = 371
Score = 28.1 bits (63), Expect = 8.0
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 73 GGASFYADDGYAKAGAMIYKIAKEV 97
G S + DD Y AGA I A EV
Sbjct: 40 GAGSGFDDDDYEAAGAKIVATAAEV 64
>gnl|CDD|240630 cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic
domains. Alanine dehydrogenase (L-AlaDH) catalyzes the
NAD-dependent conversion of pyruvate to L-alanine via
reductive amination. Like formate dehydrogenase and
related enzymes, L-AlaDH is comprised of 2 domains
connected by a long alpha helical stretch, each
resembling a Rossmann fold NAD-binding domain. The
NAD-binding domain is inserted within the linear
sequence of the more divergent catalytic domain. Ligand
binding and active site residues are found in the cleft
between the subdomains. L-AlaDH is typically hexameric
and is critical in carbon and nitrogen metabolism in
micro-organisms.
Length = 359
Score = 27.8 bits (63), Expect = 9.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 73 GGASFYADDGYAKAGAMIYKIAKEV 97
G S ++D+ Y++AGA I A+EV
Sbjct: 40 GLGSGFSDEEYSEAGAEIVPTAEEV 64
>gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase; Validated.
Length = 476
Score = 28.1 bits (63), Expect = 9.0
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 10/50 (20%)
Query: 120 GVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLL 169
G++IPGG ++G++ ++ KE Y I+GIC GFQ+L
Sbjct: 39 GLIIPGGS--------LVESGSLTDELKKEILNFDGY--IIGICSGFQIL 78
>gnl|CDD|163117 TIGR03039, PS_II_CP47, photosystem II chlorophyll-binding protein
CP47. [Energy metabolism, Photosynthesis].
Length = 504
Score = 27.9 bits (62), Expect = 9.7
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 206 RAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKV 265
R ++VL +A +T +W W IT D G V + + GL F+++ H V
Sbjct: 57 RQGMYVLPFMARLGVTGSWGGWSITGETGVDPGFWSFEGVAAAHIVLSGLLFLAACWHWV 116
Query: 266 Y 266
Y
Sbjct: 117 Y 117
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.425
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,243,360
Number of extensions: 1768416
Number of successful extensions: 1700
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1675
Number of HSP's successfully gapped: 136
Length of query: 350
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 252
Effective length of database: 6,590,910
Effective search space: 1660909320
Effective search space used: 1660909320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)