RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14047
(350 letters)
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Length = 315
Score = 216 bits (551), Expect = 2e-68
Identities = 107/349 (30%), Positives = 162/349 (46%), Gaps = 61/349 (17%)
Query: 2 EATERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKI 61
+ ++PIIGIL Q+ V K++ YI ASYVK +E++GARV P+ + E
Sbjct: 26 DTAKKPIIGILMQKCRNKVMKNYGR--YYIAASYVKYLESAGARVVPVRLDLTEK----- 78
Query: 62 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGV 121
E + +NG+
Sbjct: 79 ------------------------------------------------DYEILFKSINGI 90
Query: 122 LIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRT 181
L PGG YAK + Y ++ + ++ DYFP+ G CLGF+ L + E L T
Sbjct: 91 LFPGGSVDLR-RSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGEC-LLT 148
Query: 182 RCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNG-LA 240
D + L F S ++ P +L LA +T N+H W ++ NFT N L
Sbjct: 149 ATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLK 208
Query: 241 KEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARY 300
K + VL+TN++ ++FIS++E YP G+Q+HPEK YEWK H A++ A Y
Sbjct: 209 KFFNVLTTNTDG-KIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFY 267
Query: 301 FFDWLVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
++ V++A ++H F++E EE+ ALIY + P YT I + Q Y+F
Sbjct: 268 LAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYTGNIS--SFQQCYIF 314
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II,
structural genomics, protein structure initiative; 2.30A
{Listeria innocua}
Length = 254
Score = 49.2 bits (118), Expect = 5e-07
Identities = 30/182 (16%), Positives = 50/182 (27%), Gaps = 78/182 (42%)
Query: 4 TERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILG 63
+ +P+IGI GVD + +Y YV A++ G
Sbjct: 2 SLKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFP----------------- 44
Query: 64 QVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLI 123
+ +P S + + V+G+L+
Sbjct: 45 ----IALPIDDPS---------------------------------TAVQAISLVDGLLL 67
Query: 124 PGGG---ASFYADDGYAKAGAMIYKIAKEFNENRDYF-------------PIMGICLGFQ 167
GG Y ++ + G + RD + PI IC G Q
Sbjct: 68 TGGQDITPQLYLEEPSQEIG--------AYFPPRDSYEIALVRAALDAGKPIFAICRGMQ 119
Query: 168 LL 169
L+
Sbjct: 120 LV 121
Score = 31.1 bits (71), Expect = 0.49
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 15/51 (29%)
Query: 261 VEHKVYP-FA-GIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDWLVSQA 309
VE P + G+Q+HP E D ++ F LV ++
Sbjct: 203 VEGDNLPSWYLGVQWHP-----ELMFQTDPESEQL--------FQALVDES 240
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 3e-05
Identities = 30/211 (14%), Positives = 60/211 (28%), Gaps = 67/211 (31%)
Query: 141 AMIYKIAKEFNENRDYFP---------IMGICLGFQLLLYTSNNENELRTRCDCFYENLA 191
++I + ++ D + I+ L E R ++ L+
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-------EPAEYRKM----FDRLS 379
Query: 192 LEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSN--------FTDNGLAKEW 243
+ F S + P +L + W + L ++
Sbjct: 380 V-----FPPS---AHIPTILLSLI-----------WFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 244 KVLSTNS-NNRGLKFISSVEHKVYPFAGIQFHPEK--NAYEWKLTQDNPHTRIAIENARY 300
ST S + L+ +E++ H + Y T D+ I +Y
Sbjct: 421 PKESTISIPSIYLELKVKLENEY------ALH-RSIVDHYNIPKTFDS-DDLIPPYLDQY 472
Query: 301 FFDWLVSQASGSHHSFETEEEEKAAL---IY 328
F+ + HH E E+ L ++
Sbjct: 473 FYSHIG------HHLKNIEHPERMTLFRMVF 497
Score = 39.5 bits (91), Expect = 0.001
Identities = 61/434 (14%), Positives = 113/434 (26%), Gaps = 148/434 (34%)
Query: 10 GILTQEPCLGVDKHFADFKSYIPASY--VKAVEASGARVAPIFIGNPEAY-YRKILGQVN 66
IL++E H K + + + + + F+ Y+ ++ +
Sbjct: 44 SILSKEEI----DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 67 GVLI-PGGGASFYAD-------DG--YAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILG 116
P Y + D +AK Y +++ Y +L L+ K +
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAK-----YNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 117 QVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPI----MGIC------LGF 166
++GVL G G ++ A D YK+ + + F I + C L
Sbjct: 155 -IDGVL--GSGKTWVALDVCLS-----YKVQCKMD-----FKIFWLNLKNCNSPETVLEM 201
Query: 167 QLLLYTSNNEN---------ELRTRCDCFYENLALEFM-PSFRQSLLYSRAPIHVLQELA 216
L + N ++ R L + LL VL +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-------VLLNV- 253
Query: 217 TSHITHNWHMW--------C---IT--PSNFTDNGLAKEWKVLSTNSNNRGL-------- 255
+ C +T TD A +S + ++ L
Sbjct: 254 -------QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 256 --KFIS-------SVEHKVYPFA----GIQFHPEKNAYE-WKLTQDNPHTRIAIENA--- 298
K++ P ++ WK + T I IE++
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-IESSLNV 365
Query: 299 -------RYFFD------------------WLVSQASGSHHSFETEEEEKAALIYNYC-- 331
+ F W +++ ++ Y
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI--------KSDVMVVVNKLHKYSLV 417
Query: 332 ----PEYTAYIPGI 341
E T IP I
Sbjct: 418 EKQPKESTISIPSI 431
Score = 28.7 bits (63), Expect = 3.6
Identities = 20/113 (17%), Positives = 33/113 (29%), Gaps = 16/113 (14%)
Query: 187 YENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVL 246
Y+++ F +F + L+ I H I S +G + + L
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH------IIMSKDAVSGTLRLFWTL 71
Query: 247 STNSNNRGLKFISSVEHKVYPFAGIQFHPEKNA-------YEW---KLTQDNP 289
+ KF+ V Y F E+ Y +L DN
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria,
transferase; HET: PG4; 1.62A {Plasmodium falciparum}
SCOP: c.23.16.1 PDB: 4ads_G
Length = 227
Score = 39.3 bits (91), Expect = 8e-04
Identities = 38/194 (19%), Positives = 62/194 (31%), Gaps = 28/194 (14%)
Query: 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN 174
LG +G++IPGG ++ + + + + + PI G C G LL
Sbjct: 41 LGLCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLK--KPIWGTCAGCILLSKNVE 98
Query: 175 NENELRTRCDCFY---ENLALEFMPSFRQSL-LYSRAPIHVLQELATSHITHNWHMWCIT 230
N + F ++ + Q+ I +
Sbjct: 99 NIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIISDSSAFK-KDLTAACIRAPY 157
Query: 231 PSNFTDNGLAKEWKVLSTNSNN-RGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNP 289
L+ E KVL+T S+ G I++VE G FHPE L
Sbjct: 158 IREI----LSDEVKVLATFSHESYGPNIIAAVEQN--NCLGTVFHPE-------LLPH-- 202
Query: 290 HTRIAIENARYFFD 303
T +YF++
Sbjct: 203 -TAF----QQYFYE 211
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved
protein, structural genomics; 1.90A {Methanocaldococcus
jannaschii}
Length = 186
Score = 38.9 bits (91), Expect = 0.001
Identities = 29/180 (16%), Positives = 63/180 (35%), Gaps = 45/180 (25%)
Query: 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFN---ENRDY-FPIMGICLGFQL 168
+ L ++ ++IPGG ++ I K+ K++ + ++ PI+G C G L
Sbjct: 33 EDLEGIDALIIPGGEST------------AIGKLMKKYGLLEKIKNSNLPILGTCAGMVL 80
Query: 169 LLYTSNNENELRTRCDCFYENLALEFM----PSFRQSLLYSRAPIHVLQELATSHITHNW 224
L + L D + SF + + L ++ I
Sbjct: 81 LSKGTGINQILLELMDI---TVKRNAYGRQVDSFEKEIE-----FKDLGKVYGVFIRAPV 132
Query: 225 HMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKL 284
+ + + +V++ + + I V+ + + FHPE + +K+
Sbjct: 133 ----VDKIL------SDDVEVIARDGD-----KIVGVKQG--KYMALSFHPELSEDGYKV 175
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine
nucleotide biosy process, ligase; HET: XMP; 2.72A
{Plasmodium falciparum}
Length = 556
Score = 39.9 bits (94), Expect = 0.001
Identities = 41/210 (19%), Positives = 64/210 (30%), Gaps = 47/210 (22%)
Query: 93 IAKEVSYRELD----IWQSLLKIEKILG-QVNGVLIPGGGASFYADDGYAKAGAMIYKIA 147
I K + + ++++ I + GV++ GG S +++
Sbjct: 23 IVKRL--NNIKIFSETKDYGVELKDIKDMNIKGVILSGGPYSVTEAGSP-HLKKEVFEYF 79
Query: 148 KEFNENRDYFPIMGICLGFQLLLYT-------SNN----------ENELRTRCDCFYENL 190
E PI GIC G Q + S + N
Sbjct: 80 LEKK-----IPIFGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNILRNDNINNITYCRNF 134
Query: 191 ALEFMPSFRQSLLYSRAPIHVLQELATSHITHNW--HMWCIT--PSNFTDNGLAKEWKVL 246
S L E S IT W H +T P NF ++
Sbjct: 135 GDSSSAMDLYSNYKLMNETCCLFENIKSDITTVWMNHNDEVTKIPENF---------YLV 185
Query: 247 STNSNNRGLKFISSVEHKVYPFAGIQFHPE 276
S++ N I S+ +K Y G+Q+HPE
Sbjct: 186 SSSENCL----ICSIYNKEYNIYGVQYHPE 211
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold,
structural genomics, joint center for structural
genomics, JCSG; 1.70A {Thermotoga maritima} SCOP:
c.23.16.1
Length = 239
Score = 35.9 bits (83), Expect = 0.010
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 96 EVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRD 155
Y + + K+E+ L + + V++ GG Y ++ Y I + +
Sbjct: 39 SFDYLDTPKGE---KLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEI- 94
Query: 156 YFPIMGICLGFQLL 169
P +GICLG Q+L
Sbjct: 95 --PFLGICLGSQML 106
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure,
ATP-binding, cytoplasm, ligase, nucleotide-binding,
purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga
maritima}
Length = 213
Score = 35.9 bits (84), Expect = 0.011
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 13/62 (20%)
Query: 115 LGQVNGVLIPGGGASF-YADDGYAKAGAM-----IYKIAKEFNENRDYFPIMGICLGFQL 168
L +++PGG F Y D Y + GA+ I + E IMGIC GFQ+
Sbjct: 39 LDDYELIILPGG---FSYGD--YLRPGAVAAREKIAFEIAKAAERG--KLIMGICNGFQI 91
Query: 169 LL 170
L+
Sbjct: 92 LI 93
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.012
Identities = 44/301 (14%), Positives = 77/301 (25%), Gaps = 122/301 (40%)
Query: 8 IIGILTQEPCLGVDKHFADFKSYIPASYV--------------KAVEASGARVAPIF--I 51
+ L QE + K K+YI A + +AV A++ IF
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 52 GNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYREL-DIWQSLLK 110
GN + Y+ +E+ R+L + L+
Sbjct: 164 GNTDDYF------------------------------------EEL--RDLYQTYHVLVG 185
Query: 111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLL 170
LI + + ++ + + F G +L
Sbjct: 186 ----------DLI-------------KFSAETLSELIRTTLDAEKVFT-----QGLNILE 217
Query: 171 YTSNNENELRTRCDCFYENLALEFMP-SFRQSLLYSRAPIHVLQELATSHITHNWHMWCI 229
+ N D Y L +P S P+ + +LA +T +
Sbjct: 218 WLENPS----NTPDKDY----LLSIPISC---------PLIGVIQLAHYVVTA--KLLGF 258
Query: 230 TPSNFTDN--GL---------------AKEWKVLSTNSNN--RGLKFISSVEHKVYPFAG 270
TP G W+ + L FI ++ YP
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 271 I 271
+
Sbjct: 319 L 319
Score = 35.0 bits (80), Expect = 0.039
Identities = 56/334 (16%), Positives = 99/334 (29%), Gaps = 118/334 (35%)
Query: 7 PIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQVN 66
P+IG + Q L A YV + G P G +Y + G
Sbjct: 239 PLIG-VIQ---L--------------AHYVVTAKLLG--FTP---GELRSYLKGATGHSQ 275
Query: 67 GVLI------PGGGASFYADDGYAKAGAMIYKIAKEV--SYRELDIWQSLLK-------- 110
G++ SF+ KA +++ I +Y + S+L+
Sbjct: 276 GLVTAVAIAETDSWESFF--VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 111 ---------------IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRD 155
++ + + N L P G + I+ N
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHL-PAGKQ--------------VE-ISL-VN-GAK 375
Query: 156 YFPIMGICLGFQLLLYTSNNENELR-TRCDCFYENLALEFMPSFRQSLLYSR-----API 209
+ G LY N LR + + + F S R+ +R +P
Sbjct: 376 NL----VVSGPPQSLYGLN--LTLRKAKAPSGLDQSRIPF--SERKLKFSNRFLPVASPF 427
Query: 210 H----------VLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFIS 259
H + ++L ++++ N I P T +G + +VLS + + R + I
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQI-PVYDTFDG--SDLRVLSGSISERIVDCI- 483
Query: 260 SVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRI 293
+ V W+ T T I
Sbjct: 484 -IRLPVK---------------WETTTQFKATHI 501
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene,
phosphoprotein, GMP synthetase, guanine monophosphate
synthetase, chromosomal rearrangement; HET: XMP; 2.5A
{Homo sapiens}
Length = 697
Score = 36.5 bits (85), Expect = 0.013
Identities = 40/206 (19%), Positives = 65/206 (31%), Gaps = 76/206 (36%)
Query: 93 IAKEVSYREL----DIWQSLLKIEKILG-QVNGVLIPGGGASFYADDGYAKAGAMIYKIA 147
I + V REL +I+ I ++I GG S YA+D I+ I
Sbjct: 45 IDRRV--RELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDAP-WFDPAIFTIG 101
Query: 148 KEFNENRDYFPIMGICLGFQLLLYT------SNNENELRTRCDCFYENLALEFMPSFRQS 201
K P++GIC G Q++ + E
Sbjct: 102 K---------PVLGICYGMQMMNKVFGGTVHKKSVRE----------------------- 129
Query: 202 LLYSRAPIHV------LQELATSHI---THNWHMWCITPSNFTD--NGLAKEWKVLSTNS 250
I V + L + TH D + +A +KV++ +
Sbjct: 130 --DGVFNISVDNTCSLFRGLQKEEVVLLTH------------GDSVDKVADGFKVVARSG 175
Query: 251 NNRGLKFISSVEHKVYPFAGIQFHPE 276
N ++ + ++ G QFHPE
Sbjct: 176 N-----IVAGIANESKKLYGAQFHPE 196
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan
biosynthesis, glutamine amidotransferase, allosteric
interaction, lyase; 2.50A {Sulfolobus solfataricus}
SCOP: c.23.16.1
Length = 195
Score = 35.1 bits (82), Expect = 0.016
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 261 VEHKVYPFAGIQFHPE 276
+ H+ YP G+QFHPE
Sbjct: 162 IHHEEYPIYGVQFHPE 177
Score = 26.7 bits (60), Expect = 9.9
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 158 PIMGICLGFQ 167
PI+G+CLG Q
Sbjct: 79 PILGVCLGHQ 88
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.23.16.1
Length = 200
Score = 35.2 bits (82), Expect = 0.017
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 240 AKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEK 277
+ + G F + + + QFHPEK
Sbjct: 148 LTPYSLGKGE--YEGTPFTALLAKE--NLLAPQFHPEK 181
Score = 31.7 bits (73), Expect = 0.21
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 158 PIMGICLGFQLLLYTS 173
P +GIC+G Q+L S
Sbjct: 77 PFLGICVGMQVLYEGS 92
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase,
gatases, riken structural genomics/proteomics
initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP:
c.23.16.1 PDB: 2d7j_A
Length = 189
Score = 35.0 bits (81), Expect = 0.019
Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 57/197 (28%)
Query: 93 IAKEVSYRELD----IWQSLLKIEKILG-QVNGVLIPGGGASFYADDGYAKAGAMIYKIA 147
I + + R L I + +E+I G++ GG + + K+
Sbjct: 16 IWRTL--RYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGPSLENTGNCE--------KVL 65
Query: 148 KE-FNENRDYFPIMGICLGFQLLLYT------SNNENELRTRCDCFYENLALEFMPSFRQ 200
+ N PI+GICLG QL+ + E
Sbjct: 66 EHYDEFN---VPILGICLGHQLIAKFFGGKVGRGEKAE---------------------- 100
Query: 201 SLLYSRAPIHVLQELAT-SHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFIS 259
YS I ++ E + +W + L ++K+L+ + I
Sbjct: 101 ---YSLVEIEIIDEXEIFKGLPKRLKVWESHMDEVKE--LPPKFKILARSETCP----IE 151
Query: 260 SVEHKVYPFAGIQFHPE 276
+++H+ P G+QFHPE
Sbjct: 152 AMKHEELPIYGVQFHPE 168
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel,
alpha/beta three layer sandwich, lyase transferase; HET:
5RP; 2.90A {Thermotoga maritima}
Length = 208
Score = 35.1 bits (81), Expect = 0.019
Identities = 28/172 (16%), Positives = 51/172 (29%), Gaps = 40/172 (23%)
Query: 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFN-------ENRDYFPIMGICLGFQ 167
L V+G+++PGG ++ + +I KE + + P+ C G
Sbjct: 55 LDMVDGLILPGGEST------------TMIRILKEMDMDEKLVERINNGLPVFATCAGVI 102
Query: 168 LLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHI-THNWHM 226
LL N ++ + L + + Y R + + +
Sbjct: 103 LLAKRIKNYSQEK-----------LGVLDITVERNAYGRQVESFETFVEIPAVGKDPFRA 151
Query: 227 WCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKN 278
I + G E +L+T V+ FHPE
Sbjct: 152 IFIRAPRIVETGKNVE--ILATYDY-----DPVLVKEG--NILACTFHPELT 194
>1gpw_B Amidotransferase HISH; lyase/transferase, complex
(lyase/transferase), histidine biosynthesis,
glutaminase, glutamine amidotransferase; 2.4A
{Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A
2wjz_B
Length = 201
Score = 34.8 bits (81), Expect = 0.023
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 241 KEWKVLSTNSNNRGLKFISSVEHK-VYPFAGIQFHPEK 277
+E + +T G F S+V + G QFHPEK
Sbjct: 149 EEHVLGTTE--YDGEIFPSAVRKGRIL---GFQFHPEK 181
Score = 32.5 bits (75), Expect = 0.13
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 158 PIMGICLGFQLLLYTS 173
++G+CLG QLL S
Sbjct: 79 YVVGVCLGMQLLFEES 94
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase;
HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1
PDB: 1i7q_B 1i7s_B*
Length = 192
Score = 34.4 bits (80), Expect = 0.026
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 258 ISSVEHKVYPFAGIQFHPE 276
+ +V H G QFHPE
Sbjct: 153 VMAVRHDADRVCGFQFHPE 171
Score = 26.6 bits (60), Expect = 8.7
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 158 PIMGICLGFQ 167
PI+GICLG Q
Sbjct: 78 PIIGICLGHQ 87
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis,
structural genomics, NPPSFA; 1.90A {Thermus
thermophilus}
Length = 191
Score = 33.7 bits (77), Expect = 0.048
Identities = 33/206 (16%), Positives = 56/206 (27%), Gaps = 68/206 (33%)
Query: 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172
+ L + +++PGG S + G I ++ E + G C G L
Sbjct: 35 EHLEGLKALIVPGGE-STTIGKLAREYG--IEDEVRKRVEEGS-LALFGTCAGAIWLAKE 90
Query: 173 SNNE---------------NELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELAT 217
N + + F E+L +E + SF + +
Sbjct: 91 IVGYPEQPRLGVLEAWVERNAFGRQVESFEEDLEVEGLGSFHGVFIRA------------ 138
Query: 218 SHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEK 277
+ +VL+ + V FHPE
Sbjct: 139 ---------PVFRRL-------GEGVEVLARLGD-----LPVLVRQG--KVLASSFHPE- 174
Query: 278 NAYEWKLTQDNPHTRIAIENARYFFD 303
LT+D R+ RYF +
Sbjct: 175 ------LTED---PRL----HRYFLE 187
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A
{Sulfolobus solfataricus}
Length = 535
Score = 34.4 bits (80), Expect = 0.055
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 18/70 (25%)
Query: 103 DIWQSLLKIEKILGQVNGVLIPGG----GASFYADDGYAKAGAMIYKIAKEFNENRDYFP 158
D+ + +ILG VNG+++ G GA +G K A+ Y A+E N P
Sbjct: 336 DLESDTKNLNEILGNVNGIIVLPGFGSRGA-----EG--KIKAIKY--AREHN-----IP 381
Query: 159 IMGICLGFQL 168
+GIC GFQL
Sbjct: 382 FLGICFGFQL 391
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; HET: GLN;
2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10
PDB: 1vcn_A 1vcm_A
Length = 550
Score = 33.6 bits (78), Expect = 0.086
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 18/62 (29%)
Query: 111 IEKILGQVNGVLIPGG----GASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGF 166
+E+ V+G+L+PGG G +G K A Y A+E P +GICLG
Sbjct: 349 LEEAFRDVSGILVPGGFGVRGI-----EG--KVRAAQY--ARERK-----IPYLGICLGL 394
Query: 167 QL 168
Q+
Sbjct: 395 QI 396
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella
burnetii}
Length = 527
Score = 33.6 bits (78), Expect = 0.089
Identities = 35/211 (16%), Positives = 68/211 (32%), Gaps = 77/211 (36%)
Query: 93 IAKEVSYRELD----IWQSLLKIEKILG-QVNGVLIPGGGASFYADDGYAKAGAMIYKIA 147
IA+ V RE+ + + E I +G+++ GG + +A A I++I
Sbjct: 26 IARRV--REIGVYCELMPCDIDEETIRDFNPHGIILSGGPETVTLSHTL-RAPAFIFEIG 82
Query: 148 KEFNENRDYFPIMGICLGFQLLLYT------SNNENELRTRCDCFYENLALEFMPSFRQS 201
P++GIC G Q + Y + E
Sbjct: 83 ---------CPVLGICYGMQTMAYQLGGKVNRTAKAE----------------------- 110
Query: 202 LLYSRAPIHV---------LQELATSHITHNWHMW-----CIT--PSNFTDNGLAKEWKV 245
+ A + V +++ + +W ++ P F +
Sbjct: 111 --FGHAQLRVLNPAFLFDGIEDQVSPQGEPLLDVWMSHGDIVSELPPGF---------EA 159
Query: 246 LSTNSNNRGLKFISSVEHKVYPFAGIQFHPE 276
+ N+ ++++ F G+QFHPE
Sbjct: 160 TACTDNSP----LAAMADFKRRFFGLQFHPE 186
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding,
ATP binding, purine nucleotide biosynthetic pathway,
structural genomics; 2.10A {Thermus thermophilus} PDB:
2ywc_A*
Length = 503
Score = 33.6 bits (78), Expect = 0.096
Identities = 34/202 (16%), Positives = 64/202 (31%), Gaps = 68/202 (33%)
Query: 93 IAKEVSYRELD----IWQSLLKIEKILG-QVNGVLIPGGGASFYADDGYAKAGAMIYKIA 147
IA+ + REL I +E++L + +++ GG S + D + ++
Sbjct: 15 IARRL--RELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAP-RPDPRLFSSG 71
Query: 148 KEFNENRDYFPIMGICLGFQLLLYT------SNNENELRTRCDCFYENLALEFMPSFRQS 201
P++GIC G QLL E
Sbjct: 72 ---------LPLLGICYGMQLLAQELGGRVERAGRAE----------------------- 99
Query: 202 LLYSRAPIHVLQELATSHITHNWHMW-----CIT--PSNFTDNGLAKEWKVLSTNSNNRG 254
Y +A + + + +W +T P + +V++ N
Sbjct: 100 --YGKALLTRHEGPLFRGLEGEVQVWMSHQDAVTAPPPGW---------RVVAETEENP- 147
Query: 255 LKFISSVEHKVYPFAGIQFHPE 276
++++ G+QFHPE
Sbjct: 148 ---VAAIASPDGRAYGVQFHPE 166
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2,
predicted glutamine amidotransferase, PSI; HET: MSE;
1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Length = 219
Score = 32.1 bits (73), Expect = 0.19
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN 174
L ++G+++PGG S + G + + K+F P+ G C G LL
Sbjct: 58 LEGLDGLVLPGG-ESTTMRRLIDRYG--LMEPLKQFAAAG--KPMFGTCAGLILLAKRIV 112
Query: 175 NENE 178
+E
Sbjct: 113 GYDE 116
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase,
N-type ATP pyrophosphata transferase (glutamine
amidotransferase); HET: AMP CIT; 2.20A {Escherichia
coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Length = 525
Score = 32.4 bits (75), Expect = 0.22
Identities = 35/211 (16%), Positives = 73/211 (34%), Gaps = 77/211 (36%)
Query: 93 IAKEVSYRELD----IWQSLLKIEKILG-QVNGVLIPGGGASFYADDGYAKAGAMIYKIA 147
+A+ V REL +W + +I +G+++ GG S ++ +A +++
Sbjct: 23 VARRV--RELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEENSP-RAPQYVFEAG 79
Query: 148 KEFNENRDYFPIMGICLGFQLLLYT------SNNENELRTRCDCFYENLALEFMPSFRQS 201
P+ G+C G Q + ++NE E
Sbjct: 80 ---------VPVFGVCYGMQTMAMQLGGHVEASNERE----------------------- 107
Query: 202 LLYSRAPIHV---------LQELATSHITHNWHMW-----CIT--PSNFTDNGLAKEWKV 245
+ A + V +++ T+ +W +T PS+F
Sbjct: 108 --FGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDF---------IT 156
Query: 246 LSTNSNNRGLKFISSVEHKVYPFAGIQFHPE 276
+++ + + + ++ F G+QFHPE
Sbjct: 157 VASTESCP----FAIMANEEKRFYGVQFHPE 183
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B*
1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Length = 379
Score = 32.0 bits (74), Expect = 0.27
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 158 PIMGICLGFQLL 169
P+ GICLG QLL
Sbjct: 263 PVFGICLGHQLL 274
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel,
chorismate, type 1 glutamine amidotransfera phenazine
biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP}
PDB: 3r74_A* 3r76_A*
Length = 645
Score = 31.7 bits (72), Expect = 0.37
Identities = 5/19 (26%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
Query: 258 ISSVEHKVYPFAGIQFHPE 276
+ ++ F+ +QFH E
Sbjct: 599 VHALRGP--TFSSMQFHAE 615
Score = 27.5 bits (61), Expect = 8.0
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 158 PIMGICLGFQLL 169
P M +CL Q+L
Sbjct: 523 PFMAVCLSHQIL 534
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming),
cytidine 5 triphosphate synthase, ammonia lyase; 2.30A
{Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB:
2ad5_A*
Length = 545
Score = 31.7 bits (73), Expect = 0.39
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 18/60 (30%)
Query: 113 KILGQVNGVLIPGG----GASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQL 168
+IL ++ +L+PGG G +G + A+E N P +GICLG Q+
Sbjct: 339 EILKGLDAILVPGGFGYRGV-----EG--MITTARF--ARENN-----IPYLGICLGMQV 384
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase,
transferas; 2.70A {Streptococcus mutans}
Length = 236
Score = 31.3 bits (71), Expect = 0.39
Identities = 30/190 (15%), Positives = 61/190 (32%), Gaps = 44/190 (23%)
Query: 96 EVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAK--AGAMIYKIAKEFNEN 153
+VS ++ ++ L K + + +++ GG S + K+ ++ ++
Sbjct: 27 DVSMTKVYRYEKLPKD---IDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKS 83
Query: 154 RDYFPIMGICLGFQLLLYTSNNENELRTRCDC-FYENLALEFMPSFRQSLLYSRAP--IH 210
I+G+CLG QL+ + + + Y + + + S +
Sbjct: 84 E--KIIVGVCLGAQLMGVAYGADYLHSPKKEIGNYL---ISLTEAGKMDSYLSDFSDDLL 138
Query: 211 VLQELATSHITHNWH--MWCITPSNFTDNGLAKEWKVLSTNSN--NRGLKFISSVEHKVY 266
V WH M + P VL+ + + +K K Y
Sbjct: 139 VGH----------WHGDMPGL-PDKAQ---------VLAISQGCPRQIIK----FGPKQY 174
Query: 267 PFAGIQFHPE 276
Q H E
Sbjct: 175 ---AFQCHLE 181
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2;
HET: MSE; 1.30A {Methylobacillus flagellatus} PDB:
3l83_A*
Length = 250
Score = 30.9 bits (70), Expect = 0.45
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLL 169
+ +G+ + GG S A+D ++ I + P++G CLG QLL
Sbjct: 46 IRDCSGLAMMGGPMS--ANDDLPWMPTLLALIRDAVAQRV---PVIGHCLGGQLL 95
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich,
rossmann fold, glutaminase; 1.73A {Bacillus subtilis}
SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Length = 196
Score = 30.4 bits (69), Expect = 0.59
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN 174
L +V+G+++PGG S + +EF P+ G C G +L
Sbjct: 36 LNEVDGLILPGG-ESTTMRRLIDTYQ--FMEPLREFAAQG--KPMFGTCAGLIILAKEIA 90
Query: 175 NENE 178
+
Sbjct: 91 GSDN 94
>2a9v_A GMP synthase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2, ligase;
2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Length = 212
Score = 30.2 bits (69), Expect = 0.80
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 258 ISSVEHKVYPFAGIQFHPE 276
+ HK P QFHPE
Sbjct: 163 VQGFYHKTRPIYATQFHPE 181
Score = 29.8 bits (68), Expect = 0.95
Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 17/82 (20%)
Query: 93 IAKEVSYRELD----IWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAK 148
+ + REL I + + ++ ++G+++ GG + + + K
Sbjct: 29 EWRVL--RELGVDTKIVPNDIDSSEL-DGLDGLVLSGGAPNIDEELDKL------GSVGK 79
Query: 149 E-FNENRDYFPIMGICLGFQLL 169
+ N +PI+GIC+G Q +
Sbjct: 80 YIDDHN---YPILGICVGAQFI 98
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf;
substrate channeling, amidotransferase, TIM-barrel AS A
SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae}
SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A
1ox4_A
Length = 555
Score = 30.5 bits (69), Expect = 0.83
Identities = 26/143 (18%), Positives = 38/143 (26%), Gaps = 47/143 (32%)
Query: 158 PIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELAT 217
PIMGI +G Q L S + L ++ E
Sbjct: 81 PIMGIXVGLQALFAGSVESPKST----------GLNYIDFKLSRF--------DDSEKPV 122
Query: 218 SHITHNW----------------------HMWCITPSNFTDNGL-AKEWKVLSTNSNNRG 254
I W H + ++ L WK+ +
Sbjct: 123 PEI--GWNSCIPSENLFFGLDPYKRYYFVHSFAAILNSEKKKNLENDGWKIAKAKYGSE- 179
Query: 255 LKFISSVEHKVYPFAGIQFHPEK 277
+FI++V QFHPEK
Sbjct: 180 -EFIAAVNKN--NIFATQFHPEK 199
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.90
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 16/44 (36%)
Query: 106 QSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKE 149
Q+L K++ L YADD A A+ K E
Sbjct: 20 QALKKLQASL-------------KLYADD---SAPALAIKATME 47
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1;
transhydrogenase domain I, oxidoreductase; 1.81A
{Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB:
1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A*
2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Length = 384
Score = 30.3 bits (69), Expect = 1.0
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 73 GGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKI 111
G + DD AGA I A + + D+ + K+
Sbjct: 40 GVGASITDDALTAAGATIASTAAQA-LSQADV---VWKV 74
Score = 28.4 bits (64), Expect = 4.3
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 6/54 (11%)
Query: 126 GGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENEL 179
G + DD AGA I A + D + Q + +E+
Sbjct: 40 GVGASITDDALTAAGATIASTAAQALSQAD------VVWKVQRPMTAEEGTDEV 87
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP
synthetase, GMP biosynthesis, glutamine
amidotransferase, ligase, cytoplasm; 2.40A {Homo
sapiens}
Length = 218
Score = 29.4 bits (67), Expect = 1.2
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 258 ISSVEHKVYPFAGIQFHPE 276
++ + ++ G QFHPE
Sbjct: 173 VAGIANESKKLYGAQFHPE 191
Score = 29.4 bits (67), Expect = 1.4
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 17/82 (20%)
Query: 93 IAKEVSYRELD----IWQSLLKIEKILG-QVNGVLIPGGGASFYADDGYAKAGAMIYKIA 147
I + V REL I+ I ++I GG S YA+D I+ I
Sbjct: 40 IDRRV--RELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDAP-WFDPAIFTIG 96
Query: 148 KEFNENRDYFPIMGICLGFQLL 169
K P++GIC G Q++
Sbjct: 97 K---------PVLGICYGMQMM 109
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 29.7 bits (68), Expect = 1.5
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 72 GGGASFYADDGYAKAGAMIYKIAKEVSYREL 102
G GA F AD Y +AGA + AK+ RE+
Sbjct: 40 GIGAGF-ADQDYVQAGAQVVPSAKDAWSREM 69
Score = 27.4 bits (62), Expect = 6.9
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 125 GGGASFYADDGYAKAGAMIYKIAKE 149
G GA F AD Y +AGA + AK+
Sbjct: 40 GIGAGF-ADQDYVQAGAQVVPSAKD 63
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 29.7 bits (68), Expect = 1.5
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 72 GGGASFYADDGYAKAGAMIYKIAKEV 97
G G++ D + AGA + A +V
Sbjct: 40 GEGSAI-TDADFKAAGAQLVGTADQV 64
Score = 27.4 bits (62), Expect = 6.7
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 125 GGGASFYADDGYAKAGAMIYKIAKE 149
G G++ D + AGA + A +
Sbjct: 40 GEGSAI-TDADFKAAGAQLVGTADQ 63
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3jyv_L*
1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 27.8 bits (61), Expect = 3.7
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 327 IYNYCPEYTAYIPGIGYD 344
+ + TA++P G
Sbjct: 76 LIKNGKKVTAFVPNDGCL 93
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate,
rossmann fold, alpha-aminoadipate pathway, fungal lysine
biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB:
2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Length = 394
Score = 28.5 bits (63), Expect = 4.0
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 68 VLI-PGGGASFYADDGYAKAGAMIYKIAKEVSYRELDI 104
+ + ++F + Y +AGA+I + I
Sbjct: 57 IYVEDSPQSTF-NINEYRQAGAIIVPAGSWKTAPRDRI 93
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 27.6 bits (62), Expect = 4.9
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 39 VEASGARVAPIFIGNPEAYYRKI--------LGQVNGVLIPGGGA 75
+ +G +A IF + E +R+I L +GVL GGGA
Sbjct: 38 EQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGA 82
>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices,
hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
g.14.1.2 g.14.1.2 g.14.1.2
Length = 425
Score = 27.9 bits (61), Expect = 6.0
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 217 TSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAG 270
T+ + + WC T +N+ + L T +++ + S+ E V+PF
Sbjct: 284 TTDGRSDGYRWCATTANYDRDKLFGFC---PTRADSTVMGGNSAGELCVFPFTF 334
>3ixv_A Hemocyanin AA6 chain; HC, phenolxoidase activity, tyrosinase (TY),
catecholoxidase (CO), enzyme, SDS, cryo-EM, single
particle analysis; 6.80A {Androctonus australis} PDB:
3ixw_A
Length = 626
Score = 27.6 bits (61), Expect = 8.5
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 195 MPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRG 254
+P ++ P + H + + T N L E+K LS + G
Sbjct: 107 VPPIQEVFPDRFVPAETINRANKEASNHPDQQSIVVEAEETGNILDPEYK-LSYFREDIG 165
Query: 255 LKFISSVEHKVYPF 268
+ H VYP
Sbjct: 166 INAHHWHWHIVYPA 179
>1nox_A NADH oxidase; flavoenzyme, flavoprotein FMN, oxidoreductase,
thermophIle; HET: FMN; 1.59A {Thermus thermophilus}
SCOP: d.90.1.1
Length = 205
Score = 26.8 bits (60), Expect = 9.2
Identities = 2/21 (9%), Positives = 5/21 (23%)
Query: 145 KIAKEFNENRDYFPIMGICLG 165
++ + LG
Sbjct: 164 RVRAILGLPSRAAIPALVALG 184
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle
structural genomics center for infectious disease, S
tuberculosis; 1.82A {Mycobacterium smegmatis str}
Length = 381
Score = 27.2 bits (61), Expect = 9.4
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 73 GGASFYADDGYAKAGAMIYKIAK 95
G + ++D Y +AGA I
Sbjct: 62 GAGALFSDADYERAGATIGDPWP 84
Score = 27.2 bits (61), Expect = 9.4
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 126 GGASFYADDGYAKAGAMIYKIAK 148
G + ++D Y +AGA I
Sbjct: 62 GAGALFSDADYERAGATIGDPWP 84
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome,
PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS,
structural genomics; 2.03A {Escherichia coli} SCOP:
c.23.16.2
Length = 193
Score = 26.8 bits (60), Expect = 9.8
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 16/72 (22%)
Query: 105 WQSLLKIEKILGQVN-----GVLIPGGGASFY--ADDGYAKAGAMIYKIAKEFNENRDYF 157
++ + I+K + +V +L+PGG + Y D+ ++F +
Sbjct: 69 GEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNR-------FVTFTRDFVNSGK-- 119
Query: 158 PIMGICLGFQLL 169
P+ IC G QLL
Sbjct: 120 PVFAICHGPQLL 131
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 26.3 bits (59), Expect = 9.9
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 8/45 (17%)
Query: 39 VEASGARVAPIFIGNPEAYYRKI--------LGQVNGVLIPGGGA 75
+ +GA V +F E +R + VL GGG+
Sbjct: 40 EKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGGS 84
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.425
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,600,291
Number of extensions: 340405
Number of successful extensions: 950
Number of sequences better than 10.0: 1
Number of HSP's gapped: 931
Number of HSP's successfully gapped: 81
Length of query: 350
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 256
Effective length of database: 4,077,219
Effective search space: 1043768064
Effective search space used: 1043768064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)