RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14047
(350 letters)
>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 288
Score = 170 bits (431), Expect = 2e-51
Identities = 102/345 (29%), Positives = 158/345 (45%), Gaps = 59/345 (17%)
Query: 5 ERPIIGILTQEPCLGVDKHFADFKSYIPASYVKAVEASGARVAPIFIGNPEAYYRKILGQ 64
++PIIGIL Q+ V K++ + YI ASYVK +E++GARV P+ + E
Sbjct: 2 KKPIIGILMQKCRNKVMKNYG--RYYIAASYVKYLESAGARVVPVRLDLTEKD------- 52
Query: 65 VNGVLIPGGGASFYADDGYAKAGAMIYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIP 124
E + +NG+L P
Sbjct: 53 ----------------------------------------------YEILFKSINGILFP 66
Query: 125 GGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCD 184
GG YAK + Y ++ + ++ DYFP+ G CLGF+ L + E T D
Sbjct: 67 GGSVDLR-RSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECL-LTATD 124
Query: 185 CFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWK 244
+ L F S ++ P +L LA +T N+H W ++ NFT N K++
Sbjct: 125 TVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFF 184
Query: 245 VLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEKNAYEWKLTQDNPHTRIAIENARYFFDW 304
+ T + + ++FIS++E YP G+Q+HPEK YEWK H A++ A Y ++
Sbjct: 185 NVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEF 244
Query: 305 LVSQASGSHHSFETEEEEKAALIYNYCPEYTAYIPGIGYDQTYLF 349
V++A ++H F++E EE+ ALIY + P YT I + Q Y+F
Sbjct: 245 FVNEARKNNHHFKSESEEEKALIYQFSPIYTGNIS--SFQQCYIF 287
>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2
{Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 218
Score = 51.8 bits (123), Expect = 2e-08
Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 8/167 (4%)
Query: 113 KILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYT 172
LG +G++IPGG ++ + + + + + PI G C G LL
Sbjct: 38 HDLGLCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLK--KPIWGTCAGCILLSKN 95
Query: 173 SNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWC--IT 230
N + + R + + + I
Sbjct: 96 VENIKL--YSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIISDSSAFKKDLTAACIR 153
Query: 231 PSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEK 277
+ + + + + + G I++VE G FHPE
Sbjct: 154 APYIREILSDEVKVLATFSHESYGPNIIAAVEQN--NCLGTVFHPEL 198
>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Baker's yeast
(Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Length = 232
Score = 43.4 bits (101), Expect = 2e-05
Identities = 23/167 (13%), Positives = 42/167 (25%), Gaps = 7/167 (4%)
Query: 112 EKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENR-DYFPIMGICLGFQLLL 170
+ + + +++PG G + D G + + L +
Sbjct: 39 DFNISGTSRLILPGVGNYGHFVDNLFNRGFEKPIREYIESGKPIMGICVGLQALFAGSVE 98
Query: 171 YTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCIT 230
+ +++ S + S L I
Sbjct: 99 SPKSTGLNYIDFKLSRFDDSEKPVPEIGWNSCIPSENLFFGLDP--YKRYYFVHSFAAIL 156
Query: 231 PSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEK 277
S N WK+ +FI++V QFHPEK
Sbjct: 157 NSEKKKNLENDGWKIAKAK--YGSEEFIAAVNKN--NIFATQFHPEK 199
>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase,
small subunit C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 228
Score = 39.4 bits (91), Expect = 3e-04
Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 27/119 (22%)
Query: 158 PIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELAT 217
P+ GICLG LL ++ ++ + N ++ +
Sbjct: 112 PVFGICLG-HQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVM---------------- 154
Query: 218 SHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPE 276
N + L +V + + + + P Q +PE
Sbjct: 155 -ITAQNHGFAVDEAT------LPANLRVTHKSLFD---GTLQGIHRTDKPAFSFQGNPE 203
>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermus
thermophilus [TaxId: 274]}
Length = 195
Score = 37.3 bits (85), Expect = 0.001
Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 2/59 (3%)
Query: 219 HITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEK 277
+ F ++ G F + + + QFHPEK
Sbjct: 123 EFGGAFAPLTGRHFYFANSYYGPLTPYSLGKGEYEGTPFTALLAKE--NLLAPQFHPEK 179
>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermotoga
maritima [TaxId: 2336]}
Length = 200
Score = 37.3 bits (85), Expect = 0.001
Identities = 35/188 (18%), Positives = 56/188 (29%), Gaps = 22/188 (11%)
Query: 90 IYKIAKEVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKE 149
+Y+ K S D+ L++ + + + IPG G I
Sbjct: 16 LYRGVKRASENFEDVSIELVESPRND-LYDLLFIPGVGHFGEGMRRLR----ENDLIDFV 70
Query: 150 FNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPI 209
D ++G+CLG QLL S ++ L R P
Sbjct: 71 RKHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNV----------VKLRSRRLPH 120
Query: 210 HVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFA 269
E+ N + + + + + + G F S+V
Sbjct: 121 MGWNEVIFKDTFPNGYYYFVHTYRAVCE-----EEHVLGTTEYDGEIFPSAVRKG--RIL 173
Query: 270 GIQFHPEK 277
G QFHPEK
Sbjct: 174 GFQFHPEK 181
>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 195
Score = 37.2 bits (85), Expect = 0.001
Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 27/157 (17%)
Query: 120 GVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENEL 179
++I G + + + +I + K PI+G+CLG Q ++
Sbjct: 48 RLIISPGPGTPEKREDIGVSLDVIKYLGKRT-------PILGVCLGHQA--IGYAFGAKI 98
Query: 180 RTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGL 239
R F+ ++ + + LY S + H I + ++
Sbjct: 99 RRARKVFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVVDEVHRPLIVDAISAED-- 156
Query: 240 AKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPE 276
I ++ H+ YP G+QFHPE
Sbjct: 157 ----------------NEIMAIHHEEYPIYGVQFHPE 177
>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus
subtilis [TaxId: 1423]}
Length = 195
Score = 34.9 bits (79), Expect = 0.008
Identities = 24/163 (14%), Positives = 44/163 (26%), Gaps = 25/163 (15%)
Query: 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN 174
L +V+G+++PGG + + P+ G C G +L
Sbjct: 36 LNEVDGLILPGGE-----STTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKEIA 90
Query: 175 NENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNF 234
+ + + S ++ L I
Sbjct: 91 GSDNPHLGLLNVV------VERNSFGRQVDSFEADLTIKGLDEPFTGVFIRAPHILE--- 141
Query: 235 TDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEK 277
+ +VLS ++ I + + F G FHPE
Sbjct: 142 ----AGENVEVLSEHNGR-----IVAAKQG--QFLGCSFHPEL 173
>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Serratia marcescens [TaxId: 615]}
Length = 192
Score = 34.1 bits (77), Expect = 0.014
Identities = 9/69 (13%), Positives = 17/69 (24%), Gaps = 7/69 (10%)
Query: 208 PIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYP 267
I E + + + + ++ + +V
Sbjct: 110 AIAHDGEGMFAGMANPLPVARYHSLVGSNIPADLTVNARFGEM-------VMAVRDDRRR 162
Query: 268 FAGIQFHPE 276
G QFHPE
Sbjct: 163 VCGFQFHPE 171
>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga
maritima [TaxId: 2336]}
Length = 230
Score = 33.9 bits (76), Expect = 0.022
Identities = 26/182 (14%), Positives = 47/182 (25%), Gaps = 34/182 (18%)
Query: 96 EVSYRELDIWQSLLKIEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRD 155
Y + + K+E+ L + + V++ GG Y ++ Y I + +
Sbjct: 30 SFDYLDTPKGE---KLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIP 86
Query: 156 YFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQEL 215
+ GICLG Q+L +
Sbjct: 87 FL---GICLGSQMLAKVLGASVYRGKNGEEIGWY-------------------------- 117
Query: 216 ATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVY-PFAGIQFH 274
+ + P + L + + VY G+QFH
Sbjct: 118 -FVEKVSDNKFFREFPDRLRVFQWHGDTFDLPRRATRVFTSEKYENQGFVYGKAVGLQFH 176
Query: 275 PE 276
E
Sbjct: 177 IE 178
>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 250
Score = 32.3 bits (73), Expect = 0.073
Identities = 35/187 (18%), Positives = 63/187 (33%), Gaps = 32/187 (17%)
Query: 111 IEKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLL 170
+E+ V+G+L+PGG + + A+ E P +GICLG Q+ +
Sbjct: 52 LEEAFRDVSGILVPGGF--------GVRGIEGKVRAAQYARER--KIPYLGICLGLQIAV 101
Query: 171 YTS-----------NNENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSH 219
+ E + T + ++ P+ +
Sbjct: 102 IEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKPGTLLHR 161
Query: 220 ITHNW-------HMWCITPSNFTDNGLAKEWKVLSTNSNNRGLK--FISSVEHKVYP-FA 269
+ H + + P + D V +T RG + ++E K +P F
Sbjct: 162 LYGKEEVLERHRHRYEVNP-LYVDGLERAGLVVSATTPGMRGRGAGLVEAIELKDHPFFL 220
Query: 270 GIQFHPE 276
G+Q HPE
Sbjct: 221 GLQSHPE 227
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 188
Score = 31.1 bits (69), Expect = 0.13
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Query: 219 HITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEK 277
W L ++K+L+ + I +++H+ P G+QFHPE
Sbjct: 120 KRLKVWESHMDEVKE-----LPPKFKILARSETC----PIEAMKHEELPIYGVQFHPEV 169
>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax
[TaxId: 2271]}
Length = 226
Score = 29.9 bits (66), Expect = 0.34
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 51 IGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAK 95
I + + + GVL+ A+ A D YAK + +++
Sbjct: 182 IESGDDVAAALRLGTRGVLL--ASAAVKAKDPYAKIVELAKPLSE 224
Score = 28.3 bits (62), Expect = 1.1
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 118 VNGVLIPGGGASFYADDGYAKAGAMIYKIAK 148
GVL+ A+ A D YAK + +++
Sbjct: 196 TRGVLL--ASAAVKAKDPYAKIVELAKPLSE 224
>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 202
Score = 29.9 bits (66), Expect = 0.35
Identities = 19/163 (11%), Positives = 34/163 (20%), Gaps = 25/163 (15%)
Query: 115 LGQVNGVLIPGGGASFYADDGYAKAGAMIYKIAKEFNENRDYFPIMGICLGFQLLLYTSN 174
L ++G+++PGG ++ P+ G C G LL
Sbjct: 41 LEGLDGLVLPGGESTTMRRLIDRYGLMEPL-----KQFAAAGKPMFGTCAGLILLAKRIV 95
Query: 175 NENELRTRCDCFYENLALEFMPSFRQSLLYSRAPIHVLQELATSHITHNWHMWCITPSNF 234
+E ++ + +
Sbjct: 96 GYDEPHLGLMDITVE------------------RNSFGRQRESFEAELSIKGVGDGFVGV 137
Query: 235 TDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEK 277
+ I + F G FHPE
Sbjct: 138 FIRAPHIVEAGDGVDVLATYNDRIVAARQG--QFLGCSFHPEL 178
>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 196
Score = 29.9 bits (66), Expect = 0.35
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 6/138 (4%)
Query: 144 YKIAKEFNENRDYFPIMGICLGFQLLLYTSNNENELRTRCDCFYENLALEFMPSFRQSLL 203
I + D + G L + + + + +
Sbjct: 33 NDIDSSELDGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILGICVGAQFIALHFGA 92
Query: 204 YSRAPIHVLQELATSHITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKF-----I 258
H + H+ +++ PS T ++++ + +
Sbjct: 93 SVVKAKHPEFGKTKVSVMHSENIFGGLPSEITVW-ENHNDEIINLPDDFTLAASSATCQV 151
Query: 259 SSVEHKVYPFAGIQFHPE 276
HK P QFHPE
Sbjct: 152 QGFYHKTRPIYATQFHPE 169
>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli
[TaxId: 562]}
Length = 205
Score = 29.5 bits (65), Expect = 0.41
Identities = 7/59 (11%), Positives = 15/59 (25%)
Query: 219 HITHNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYPFAGIQFHPEK 277
+ + + + + ++ F G+QFHPE
Sbjct: 124 EDALTADGKPLLDVWMSHGDKVTAIPSDFITVASTESCPFAIMANEEKRFYGVQFHPEV 182
>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus
woesei [TaxId: 2262]}
Length = 224
Score = 28.1 bits (61), Expect = 1.3
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 51 IGNPEAYYRKILGQVNGVLIPGGGASFYADDGYAKAGAMIYKI 93
I E + I GVL+ A D ++ I
Sbjct: 184 ISTGEDVKKAIELGTVGVLL--ASGVTKAKDPEKAIWDLVSGI 224
>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 258
Score = 27.6 bits (61), Expect = 2.1
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 10/70 (14%)
Query: 222 HNWHMWCITPSNFTDNGLAKEWKVLSTNSNNRGLKFISSVEHKVYP-FAGIQFHPEKNAY 280
+ H + + N ++ + + + + +E +P F QFHP
Sbjct: 180 RHRHRYEV---NNMLLKQIEDAGLRVAGRSGDD-QLVEIIEVPNHPWFVACQFHP----- 230
Query: 281 EWKLTQDNPH 290
E+ T + H
Sbjct: 231 EFTSTPRDGH 240
>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus
thermophilus [TaxId: 274]}
Length = 118
Score = 25.8 bits (57), Expect = 4.5
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 333 EYTAYIPGIGY 343
E TAYIPG G+
Sbjct: 61 EVTAYIPGEGH 71
>d1k28d2 b.106.1.1 (D:201-376) Baseplate structural protein gp27
{Bacteriophage T4 [TaxId: 10665]}
Length = 176
Score = 26.1 bits (57), Expect = 5.9
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 280 YEWKLTQDNPHTRIAIENARYF 301
+ W LT+ NPH R ++NA +
Sbjct: 34 FVW-LTKSNPHKRDPMKNATIY 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.425
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,388,165
Number of extensions: 66494
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 28
Length of query: 350
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 264
Effective length of database: 1,226,816
Effective search space: 323879424
Effective search space used: 323879424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)