BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14049
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P78424|PO6F2_HUMAN POU domain, class 6, transcription factor 2 OS=Homo sapiens
GN=POU6F2 PE=1 SV=3
Length = 691
Score = 136 bits (342), Expect = 4e-32, Method: Composition-based stats.
Identities = 59/84 (70%), Positives = 75/84 (89%)
Query: 7 RYKSGQNHLTEFIGMEPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYE 66
R+++G +LTEFIG EPSKKRKRRTSFTPQALE+LNAHFE+NTHPSG E+T +A +L Y+
Sbjct: 588 RHRAGMQNLTEFIGSEPSKKRKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYD 647
Query: 67 REVIRIWFCNKRQALKNTVRMMSK 90
REV+R+WFCNKRQALKNT++ + +
Sbjct: 648 REVVRVWFCNKRQALKNTIKRLKQ 671
>sp|Q8BJI4|PO6F2_MOUSE POU domain, class 6, transcription factor 2 OS=Mus musculus
GN=Pou6f2 PE=2 SV=1
Length = 691
Score = 136 bits (342), Expect = 5e-32, Method: Composition-based stats.
Identities = 59/84 (70%), Positives = 75/84 (89%)
Query: 7 RYKSGQNHLTEFIGMEPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYE 66
R+++G +LTEFIG EPSKKRKRRTSFTPQALE+LNAHFE+NTHPSG E+T +A +L Y+
Sbjct: 588 RHRAGMQNLTEFIGSEPSKKRKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYD 647
Query: 67 REVIRIWFCNKRQALKNTVRMMSK 90
REV+R+WFCNKRQALKNT++ + +
Sbjct: 648 REVVRVWFCNKRQALKNTIKRLKQ 671
>sp|P31367|PO6F1_DANRE POU domain, class 6, transcription factor 1 OS=Danio rerio
GN=pou6f1 PE=2 SV=1
Length = 610
Score = 121 bits (303), Expect = 2e-27, Method: Composition-based stats.
Identities = 50/79 (63%), Positives = 67/79 (84%)
Query: 9 KSGQNHLTEFIGMEPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYERE 68
+ GQ +L EF+G EPSKKRKRRTSFTPQA+E+LN +FE+N+ P+G EIT +A +L Y+RE
Sbjct: 526 QKGQQNLMEFVGGEPSKKRKRRTSFTPQAIEVLNTYFEKNSLPTGQEITEIAKELNYDRE 585
Query: 69 VIRIWFCNKRQALKNTVRM 87
V+R+WFCN+RQ LKNT ++
Sbjct: 586 VVRVWFCNRRQTLKNTSKI 604
>sp|P56223|PO6F1_RAT POU domain, class 6, transcription factor 1 OS=Rattus norvegicus
GN=Pou6f1 PE=2 SV=1
Length = 301
Score = 119 bits (297), Expect = 6e-27, Method: Composition-based stats.
Identities = 52/82 (63%), Positives = 67/82 (81%)
Query: 6 FRYKSGQNHLTEFIGMEPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGY 65
R + GQ +L EF+G EPSKKRKRRTSFTPQA+E LNA+FE+N P+G EIT +A +L Y
Sbjct: 214 LRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNY 273
Query: 66 EREVIRIWFCNKRQALKNTVRM 87
+REV+R+WFCN+RQ LKNT ++
Sbjct: 274 DREVVRVWFCNRRQTLKNTSKL 295
>sp|Q07916|PO6F1_MOUSE POU domain, class 6, transcription factor 1 OS=Mus musculus
GN=Pou6f1 PE=2 SV=1
Length = 301
Score = 118 bits (296), Expect = 1e-26, Method: Composition-based stats.
Identities = 52/82 (63%), Positives = 67/82 (81%)
Query: 6 FRYKSGQNHLTEFIGMEPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGY 65
R + GQ +L EF+G EPSKKRKRRTSFTPQA+E LNA+FE+N P+G EIT +A +L Y
Sbjct: 214 LRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNY 273
Query: 66 EREVIRIWFCNKRQALKNTVRM 87
+REV+R+WFCN+RQ LKNT ++
Sbjct: 274 DREVVRVWFCNRRQTLKNTSKL 295
>sp|Q14863|PO6F1_HUMAN POU domain, class 6, transcription factor 1 OS=Homo sapiens
GN=POU6F1 PE=1 SV=1
Length = 301
Score = 117 bits (294), Expect = 1e-26, Method: Composition-based stats.
Identities = 52/82 (63%), Positives = 67/82 (81%)
Query: 6 FRYKSGQNHLTEFIGMEPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGY 65
R + GQ +L EF+G EPSKKRKRRTSFTPQA+E LNA+FE+N P+G EIT +A +L Y
Sbjct: 214 LRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNY 273
Query: 66 EREVIRIWFCNKRQALKNTVRM 87
+REV+R+WFCN+RQ LKNT ++
Sbjct: 274 DREVVRVWFCNRRQTLKNTSKL 295
>sp|Q17237|SGF3_BOMMO Silk gland factor 3 OS=Bombyx mori GN=SGF3 PE=2 SV=1
Length = 351
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 36/58 (62%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
+KRK+RTS L HF + PS EIT+LA L E+EV+R+WFCN+RQ K
Sbjct: 240 RKRKKRTSIEVSVKGALEQHFHKQPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEK 297
>sp|B3DM23|P5F13_XENTR POU domain, class 5, transcription factor 1.3 OS=Xenopus tropicalis
GN=pou5f1.3 PE=2 SV=1
Length = 423
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 22 EPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQAL 81
E ++KRK RT F L HF N P E+ +A +LG E++V+R+WFCN+RQ
Sbjct: 297 EQNRKRKMRTCFDSVLKGRLEGHFMCNQKPGARELAEIAKELGLEKDVVRVWFCNRRQKE 356
Query: 82 KNTVRM 87
K+ RM
Sbjct: 357 KSKSRM 362
>sp|P31360|PO3F2_MOUSE POU domain, class 3, transcription factor 2 OS=Mus musculus
GN=Pou3f2 PE=2 SV=1
Length = 445
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84
+KRK+RTS L +HF + PS EIT+LA L E+EV+R+WFCN+RQ K
Sbjct: 355 RKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEK-- 412
Query: 85 VRMMSKG 91
RM G
Sbjct: 413 -RMTPPG 418
>sp|P20265|PO3F2_HUMAN POU domain, class 3, transcription factor 2 OS=Homo sapiens
GN=POU3F2 PE=1 SV=4
Length = 443
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84
+KRK+RTS L +HF + PS EIT+LA L E+EV+R+WFCN+RQ K
Sbjct: 353 RKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEK-- 410
Query: 85 VRMMSKG 91
RM G
Sbjct: 411 -RMTPPG 416
>sp|Q00286|PIT1_MOUSE Pituitary-specific positive transcription factor 1 OS=Mus musculus
GN=Pou1f1 PE=1 SV=1
Length = 291
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79
+KRKRRT+ + A + L HF ++ PS EI +A +L E+EV+R+WFCN+RQ
Sbjct: 213 RKRKRRTTISVAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQ 267
>sp|P20264|PO3F3_HUMAN POU domain, class 3, transcription factor 3 OS=Homo sapiens
GN=POU3F3 PE=2 SV=2
Length = 500
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84
+KRK+RTS L +HF + PS EIT LA L E+EV+R+WFCN+RQ K
Sbjct: 405 RKRKKRTSIEVSVKGALESHFLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEK-- 462
Query: 85 VRMMSKG 91
RM G
Sbjct: 463 -RMTPPG 468
>sp|P56222|PO3F2_RAT POU domain, class 3, transcription factor 2 OS=Rattus norvegicus
GN=Pou3f2 PE=2 SV=1
Length = 445
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84
+KRK+RTS L +HF + PS EIT+LA L E+EV+R+WFCN+RQ K
Sbjct: 355 RKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEK-- 412
Query: 85 VRMMSKG 91
RM G
Sbjct: 413 -RMTPPG 418
>sp|Q63262|PO3F3_RAT POU domain, class 3, transcription factor 3 OS=Rattus norvegicus
GN=Pou3f3 PE=1 SV=2
Length = 497
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84
+KRK+RTS L +HF + PS EIT LA L E+EV+R+WFCN+RQ K
Sbjct: 402 RKRKKRTSIEVSVKGALESHFLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEK-- 459
Query: 85 VRMMSKG 91
RM G
Sbjct: 460 -RMTPPG 465
>sp|P79745|P3F3B_DANRE POU domain, class 3, transcription factor 3-B OS=Danio rerio
GN=pou3f3b PE=1 SV=1
Length = 443
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84
+KRK+RTS L +HF + PS EIT+LA L E+EV+R+WFCN+RQ K
Sbjct: 329 RKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADNLQLEKEVVRVWFCNRRQKEK-- 386
Query: 85 VRMMSKG 91
RM G
Sbjct: 387 -RMTPPG 392
>sp|P31361|PO3F3_MOUSE POU domain, class 3, transcription factor 3 OS=Mus musculus
GN=Pou3f3 PE=2 SV=2
Length = 497
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84
+KRK+RTS L +HF + PS EIT LA L E+EV+R+WFCN+RQ K
Sbjct: 402 RKRKKRTSIEVSVKGALESHFLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEK-- 459
Query: 85 VRMMSKG 91
RM G
Sbjct: 460 -RMTPPG 465
>sp|P10037|PIT1_RAT Pituitary-specific positive transcription factor 1 OS=Rattus
norvegicus GN=Pou1f1 PE=1 SV=3
Length = 291
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79
+KRKRRT+ + A + L HF ++ PS EI +A +L E+EV+R+WFCN+RQ
Sbjct: 213 RKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQ 267
>sp|Q9YGL7|PIT1_CHICK Pituitary-specific positive transcription factor 1 OS=Gallus gallus
GN=POU1F1 PE=2 SV=1
Length = 363
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 36/55 (65%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79
+KRKRRT+ + A E L HF + PS EI +A L E+EV+R+WFCN+RQ
Sbjct: 284 RKRKRRTTISISAKEALERHFGEQSKPSSQEIMRMAEGLNLEKEVVRVWFCNRRQ 338
>sp|Q05749|PIT1_MELGA Pituitary-specific positive transcription factor 1 OS=Meleagris
gallopavo GN=POU1F1 PE=2 SV=2
Length = 370
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 36/55 (65%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79
+KRKRRT+ + A E L HF + PS EI +A L E+EV+R+WFCN+RQ
Sbjct: 291 RKRKRRTTISIAAKEALERHFGEQSKPSSQEIMRMAEGLNLEKEVVRVWFCNRRQ 345
>sp|P56224|P3F3A_DANRE POU domain, class 3, transcription factor 3-A OS=Danio rerio
GN=pou3f3a PE=2 SV=2
Length = 438
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84
+KRK+RTS L +HF + PS EIT+LA L E+EV+R+WFCN+RQ K
Sbjct: 333 RKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADNLQLEKEVVRVWFCNRRQKEK-- 390
Query: 85 VRMMSKG 91
RM G
Sbjct: 391 -RMTPPG 396
>sp|P31370|POU1_DUGJA POU domain protein 1 OS=Dugesia japonica GN=POU1 PE=2 SV=1
Length = 559
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 24 SKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
S+KRK+RTS +L + F + + PS +I++LA +L E+EV+R+WFCN+RQ K
Sbjct: 349 SRKRKKRTSIEANVKSILESSFMKLSKPSAQDISSLAEKLSLEKEVVRVWFCNRRQKEK 407
>sp|P16241|CF1A_DROME POU domain protein CF1A OS=Drosophila melanogaster GN=vvl PE=2 SV=5
Length = 427
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 36/58 (62%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
+KRK+RTS L HF + PS EIT+LA L E+EV+R+WFCN+RQ K
Sbjct: 303 RKRKKRTSIEVSVKGALEQHFHKQPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEK 360
>sp|Q28503|PIT1_MACMU Pituitary-specific positive transcription factor 1 OS=Macaca
mulatta GN=POU1F1 PE=2 SV=2
Length = 291
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79
+KRKRRT+ + A + L HF PS EI +A +L E+EV+R+WFCN+RQ
Sbjct: 213 RKRKRRTTISIAAKDALERHFGEQNKPSSQEIMRMAEELNLEKEVVRVWFCNRRQ 267
>sp|P28069|PIT1_HUMAN Pituitary-specific positive transcription factor 1 OS=Homo sapiens
GN=POU1F1 PE=1 SV=1
Length = 291
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79
+KRKRRT+ + A + L HF PS EI +A +L E+EV+R+WFCN+RQ
Sbjct: 213 RKRKRRTTISIAAKDALERHFGEQNKPSSQEIMRMAEELNLEKEVVRVWFCNRRQ 267
>sp|P10036|PIT1_BOVIN Pituitary-specific positive transcription factor 1 OS=Bos taurus
GN=POU1F1 PE=2 SV=1
Length = 291
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79
+KRKRRT+ + A + L HF PS EI +A +L E+EV+R+WFCN+RQ
Sbjct: 213 RKRKRRTTISIAAKDALERHFGEQNKPSSQEILRMAEELNLEKEVVRVWFCNRRQ 267
>sp|P31365|P3F2A_XENLA POU domain, class 3, transcription factor 2-A OS=Xenopus laevis
GN=pou3f2-a PE=2 SV=2
Length = 382
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84
+KRK+RTS L +HF + PS EIT+LA L E+EV+R+WFCN+RQ K
Sbjct: 292 RKRKKRTSIEVSVKGALESHFLKCPKPSAPEITSLADSLQLEKEVVRVWFCNRRQKEK-- 349
Query: 85 VRMMSKG 91
RM G
Sbjct: 350 -RMTPPG 355
>sp|Q9TTI7|PIT1_CANFA Pituitary-specific positive transcription factor 1 OS=Canis
familiaris GN=POU1F1 PE=2 SV=1
Length = 291
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79
+KRKRRT+ + A + L HF PS EI +A +L E+EV+R+WFCN+RQ
Sbjct: 213 RKRKRRTTISIAAKDALERHFGEQNKPSSQEIMRMAEELNLEKEVVRVWFCNRRQ 267
>sp|P79364|PIT1_SHEEP Pituitary-specific positive transcription factor 1 OS=Ovis aries
GN=POU1F1 PE=2 SV=1
Length = 291
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79
+KRKRRT+ + A + L HF PS EI +A +L E+EV+R+WFCN+RQ
Sbjct: 213 RKRKRRTTISIAAKDALERHFGEQNKPSSQEILRMAEELNLEKEVVRVWFCNRRQ 267
>sp|P79746|PO3F2_DANRE POU domain, class 3, transcription factor 2 OS=Danio rerio
GN=pou3f2 PE=1 SV=1
Length = 378
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84
+KRK+RTS L +HF + P+ +EIT+LA L E+EV+R+WFCN+RQ K
Sbjct: 291 RKRKKRTSIEVSVKGALESHFLKCPKPAASEITSLADSLQLEKEVVRVWFCNRRQKEK-- 348
Query: 85 VRMMSKG 91
RM G
Sbjct: 349 -RMTPPG 354
>sp|Q04788|PIT1_PIG Pituitary-specific positive transcription factor 1 OS=Sus scrofa
GN=POU1F1 PE=2 SV=3
Length = 291
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79
+KRKRRT+ + A + L HF PS EI +A +L E+EV+R+WFCN+RQ
Sbjct: 213 RKRKRRTTISIAAKDALERHFGEQNKPSSQEILRMAEELNLEKEVVRVWFCNRRQ 267
>sp|Q9UKI9|PO2F3_HUMAN POU domain, class 2, transcription factor 3 OS=Homo sapiens
GN=POU2F3 PE=2 SV=3
Length = 436
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 15 LTEFIGMEPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWF 74
L+E G +KRK+RTS L F+ N PS EI+ +A QL E+EV+R+WF
Sbjct: 274 LSEVFG----RKRKKRTSIETNIRLTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWF 329
Query: 75 CNKRQALK 82
CN+RQ K
Sbjct: 330 CNRRQKEK 337
>sp|P31362|PO2F3_MOUSE POU domain, class 2, transcription factor 3 OS=Mus musculus
GN=Pou2f3 PE=2 SV=2
Length = 431
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 15 LTEFIGMEPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWF 74
L+E G +KRK+RTS L F+ N PS EI+ +A QL E+EV+R+WF
Sbjct: 267 LSEVFG----RKRKKRTSIETNIRLTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWF 322
Query: 75 CNKRQALK 82
CN+RQ K
Sbjct: 323 CNRRQKEK 330
>sp|P42571|PO2F3_RAT POU domain, class 2, transcription factor 3 OS=Rattus norvegicus
GN=Pou2f3 PE=2 SV=1
Length = 430
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 15 LTEFIGMEPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWF 74
L+E G +KRK+RTS L F+ N PS EI+ +A QL E+EV+R+WF
Sbjct: 267 LSEVFG----RKRKKRTSIETNIRLTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWF 322
Query: 75 CNKRQALK 82
CN+RQ K
Sbjct: 323 CNRRQKEK 330
>sp|P14859|PO2F1_HUMAN POU domain, class 2, transcription factor 1 OS=Homo sapiens
GN=POU2F1 PE=1 SV=2
Length = 743
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/59 (47%), Positives = 36/59 (61%)
Query: 24 SKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
S++RK+RTS L F N P+ EIT +A QL E+EVIR+WFCN+RQ K
Sbjct: 377 SRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEK 435
>sp|P31364|P3F4A_XENLA POU domain, class 3, transcription factor 4-A OS=Xenopus laevis
GN=pou3f4-a PE=2 SV=2
Length = 361
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84
+KRK+RTS +L HF + P+ EIT+LA L E+EV+R+WFCN+RQ K
Sbjct: 277 RKRKKRTSIEVSVKGVLETHFLKCPKPAALEITSLADSLQLEKEVVRVWFCNRRQKEK-- 334
Query: 85 VRMMSKG 91
RM G
Sbjct: 335 -RMTPPG 340
>sp|Q91989|P5F13_XENLA POU domain, class 5, transcription factor 1.3 OS=Xenopus laevis
GN=pou5f1.3 PE=1 SV=1
Length = 426
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 22 EPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQAL 81
E ++KRK RT F L HF N P E+T +A +L E++V+R+WFCN+RQ
Sbjct: 292 EQNRKRKMRTCFDTVLKGQLEGHFMCNQKPGARELTEIAKELSLEKDVVRVWFCNRRQKE 351
Query: 82 KNTVRMMSKG 91
K+ R MSKG
Sbjct: 352 KSKFR-MSKG 360
>sp|Q90270|PO5F1_DANRE POU domain, class 5, transcription factor 1 OS=Danio rerio
GN=pou5f1 PE=2 SV=1
Length = 472
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 24 SKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
++KRKRRTS L ++F + P+ EIT ++ LG ER+V+R+WFCN+RQ K
Sbjct: 341 TRKRKRRTSLEGTVRSALESYFVKCPKPNTLEITHISDDLGLERDVVRVWFCNRRQKGK 399
>sp|P20268|HM06_CAEEL Homeobox protein ceh-6 OS=Caenorhabditis elegans GN=ceh-6 PE=2 SV=3
Length = 380
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
+KRK+RTS L HF+ N P+ EIT +A +L E+EV+R+WFCN+RQ K
Sbjct: 280 RKRKKRTSIEVNVKSRLEFHFQSNQKPNAQEITQVAMELQLEKEVVRVWFCNRRQKEK 337
>sp|P70030|P3F2B_XENLA POU domain, class 3, transcription factor 2-B OS=Xenopus laevis
GN=pou3f2-b PE=2 SV=1
Length = 385
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84
+KRK+RTS L +HF + P+ EIT+LA L E+EV+R+WFCN+RQ K
Sbjct: 295 RKRKKRTSIEVSVKGALESHFLKCPKPAAQEITSLADSLQLEKEVVRVWFCNRRQKEK-- 352
Query: 85 VRMMSKG 91
RM G
Sbjct: 353 -RMTPPG 358
>sp|P16143|PO2F1_XENLA POU domain, class 2, transcription factor 1 OS=Xenopus laevis
GN=pou2f1 PE=1 SV=3
Length = 758
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 20 GMEP-SKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKR 78
GME +++RK+RTS L F N P+ EIT +A QL E+EVIR+WFCN+R
Sbjct: 388 GMEGLNRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRR 447
Query: 79 QALK 82
Q K
Sbjct: 448 QKEK 451
>sp|Q28BL7|PO2F1_XENTR POU domain, class 2, transcription factor 1 OS=Xenopus tropicalis
GN=pou2f1 PE=2 SV=1
Length = 757
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 20 GMEP-SKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKR 78
GME +++RK+RTS L F N P+ EIT +A QL E+EVIR+WFCN+R
Sbjct: 388 GMEGLNRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRR 447
Query: 79 QALK 82
Q K
Sbjct: 448 QKEK 451
>sp|P20267|PO3F1_RAT POU domain, class 3, transcription factor 1 OS=Rattus norvegicus
GN=Pou3f1 PE=2 SV=2
Length = 451
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 36/58 (62%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
+KRK+RTS L +HF + PS EIT LA L E+EV+R+WFCN+RQ K
Sbjct: 338 RKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEK 395
>sp|Q812B1|PO3F4_MESAU POU domain, class 3, transcription factor 4 OS=Mesocricetus auratus
GN=Pou3f4 PE=2 SV=1
Length = 361
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84
+KRK+RTS +L HF + P+ EI++LA L E+EV+R+WFCN+RQ K
Sbjct: 277 RKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEK-- 334
Query: 85 VRMMSKG 91
RM G
Sbjct: 335 -RMTPPG 340
>sp|P49335|PO3F4_HUMAN POU domain, class 3, transcription factor 4 OS=Homo sapiens
GN=POU3F4 PE=1 SV=2
Length = 361
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84
+KRK+RTS +L HF + P+ EI++LA L E+EV+R+WFCN+RQ K
Sbjct: 277 RKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEK-- 334
Query: 85 VRMMSKG 91
RM G
Sbjct: 335 -RMTPPG 340
>sp|Q29076|PO2F1_PIG POU domain, class 2, transcription factor 1 OS=Sus scrofa GN=POU2F1
PE=2 SV=1
Length = 745
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 24 SKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
+++RK+RTS L F N P+ EIT +A QL E+EVIR+WFCN+RQ K
Sbjct: 379 NRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEK 437
>sp|P62516|PO3F4_RAT POU domain, class 3, transcription factor 4 OS=Rattus norvegicus
GN=Pou3f4 PE=2 SV=1
Length = 361
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84
+KRK+RTS +L HF + P+ EI++LA L E+EV+R+WFCN+RQ K
Sbjct: 277 RKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEK-- 334
Query: 85 VRMMSKG 91
RM G
Sbjct: 335 -RMTPPG 340
>sp|P62515|PO3F4_MOUSE POU domain, class 3, transcription factor 4 OS=Mus musculus
GN=Pou3f4 PE=2 SV=1
Length = 361
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84
+KRK+RTS +L HF + P+ EI++LA L E+EV+R+WFCN+RQ K
Sbjct: 277 RKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEK-- 334
Query: 85 VRMMSKG 91
RM G
Sbjct: 335 -RMTPPG 340
>sp|P15143|PO2F1_CHICK POU domain, class 2, transcription factor 1 OS=Gallus gallus
GN=POU2F1 PE=2 SV=1
Length = 739
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 24 SKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
+++RK+RTS L F N P+ EIT +A QL E+EVIR+WFCN+RQ K
Sbjct: 373 NRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEK 431
>sp|P21952|PO3F1_MOUSE POU domain, class 3, transcription factor 1 OS=Mus musculus
GN=Pou3f1 PE=1 SV=1
Length = 449
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 36/58 (62%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
+KRK+RTS L +HF + PS EIT LA L E+EV+R+WFCN+RQ K
Sbjct: 336 RKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEK 393
>sp|Q6DJN3|P3F4B_XENLA POU domain, class 3, transcription factor 4-B OS=Xenopus laevis
GN=pou3f4-b PE=2 SV=1
Length = 356
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84
+KRK+RTS +L HF + P+ EI++LA L E+EV+R+WFCN+RQ K
Sbjct: 272 RKRKKRTSIEVSVKGVLETHFLKCPKPAALEISSLADSLQLEKEVVRVWFCNRRQKEK-- 329
Query: 85 VRMMSKG 91
RM G
Sbjct: 330 -RMTPPG 335
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.131 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,139,702
Number of Sequences: 539616
Number of extensions: 1073429
Number of successful extensions: 3481
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 2530
Number of HSP's gapped (non-prelim): 1036
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)