Query psy14049
Match_columns 93
No_of_seqs 117 out of 1057
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 18:17:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.9 2.4E-23 8.1E-28 117.2 9.6 68 19-86 10-77 (80)
2 2kt0_A Nanog, homeobox protein 99.9 3.8E-23 1.3E-27 117.2 9.8 69 18-86 14-82 (84)
3 2dmu_A Homeobox protein goosec 99.9 5.8E-23 2E-27 112.9 9.4 64 23-86 4-67 (70)
4 2dms_A Homeobox protein OTX2; 99.9 5.6E-23 1.9E-27 115.6 9.5 69 22-90 3-71 (80)
5 2dmq_A LIM/homeobox protein LH 99.9 8.3E-23 2.8E-27 114.9 10.1 69 23-91 4-72 (80)
6 2cra_A Homeobox protein HOX-B1 99.9 3.2E-23 1.1E-27 114.0 8.2 65 22-86 3-67 (70)
7 2da3_A Alpha-fetoprotein enhan 99.9 3.1E-23 1.1E-27 116.5 8.2 67 20-86 11-77 (80)
8 2da2_A Alpha-fetoprotein enhan 99.9 4.5E-23 1.5E-27 113.3 8.3 65 22-86 3-67 (70)
9 1nk2_P Homeobox protein VND; h 99.9 1.2E-22 4.2E-27 113.5 9.8 68 22-89 5-72 (77)
10 2da1_A Alpha-fetoprotein enhan 99.9 4.2E-23 1.4E-27 113.4 7.6 66 22-87 3-68 (70)
11 2cue_A Paired box protein PAX6 99.9 1.2E-22 4E-27 114.3 9.4 65 23-87 4-68 (80)
12 2e1o_A Homeobox protein PRH; D 99.9 1.5E-22 5E-27 111.3 9.4 64 23-86 4-67 (70)
13 3a01_A Homeodomain-containing 99.9 1.1E-22 3.9E-27 117.3 9.2 70 22-91 13-82 (93)
14 1zq3_P PRD-4, homeotic bicoid 99.9 1.5E-22 5.2E-27 110.7 9.3 66 26-91 2-67 (68)
15 2djn_A Homeobox protein DLX-5; 99.9 6.5E-23 2.2E-27 112.7 7.7 65 22-86 3-67 (70)
16 1bw5_A ISL-1HD, insulin gene e 99.9 7E-23 2.4E-27 111.4 7.3 64 25-88 2-65 (66)
17 1puf_A HOX-1.7, homeobox prote 99.9 3.3E-22 1.1E-26 111.7 9.9 66 23-88 10-75 (77)
18 2h1k_A IPF-1, pancreatic and d 99.9 1.6E-22 5.6E-27 109.1 8.2 60 26-85 3-62 (63)
19 2vi6_A Homeobox protein nanog; 99.9 1.1E-22 3.6E-27 109.5 7.3 60 25-84 2-61 (62)
20 2l7z_A Homeobox protein HOX-A1 99.9 2.3E-22 7.7E-27 111.4 8.8 67 23-89 4-70 (73)
21 2hdd_A Protein (engrailed home 99.9 1.6E-22 5.4E-27 108.4 7.7 58 26-83 3-60 (61)
22 1wh5_A ZF-HD homeobox family p 99.9 1.6E-22 5.3E-27 113.9 7.8 61 23-83 14-78 (80)
23 1fjl_A Paired protein; DNA-bin 99.9 2.6E-22 8.9E-27 113.1 8.7 64 23-86 15-78 (81)
24 1ig7_A Homeotic protein MSX-1; 99.9 3.3E-22 1.1E-26 106.1 8.3 57 27-83 1-57 (58)
25 1ftt_A TTF-1 HD, thyroid trans 99.9 5.3E-22 1.8E-26 108.5 9.1 63 26-88 2-64 (68)
26 2m0c_A Homeobox protein arista 99.9 4.3E-22 1.5E-26 110.6 8.6 66 22-87 5-70 (75)
27 1ahd_P Antennapedia protein mu 99.9 2.9E-22 1E-26 109.6 7.7 63 26-88 2-64 (68)
28 2da4_A Hypothetical protein DK 99.9 2.8E-22 9.5E-27 112.8 7.8 67 22-88 4-74 (80)
29 1jgg_A Segmentation protein EV 99.9 5.2E-22 1.8E-26 106.1 8.0 58 27-84 2-59 (60)
30 1yz8_P Pituitary homeobox 2; D 99.9 2.5E-22 8.7E-27 109.8 6.5 64 25-88 2-65 (68)
31 1b8i_A Ultrabithorax, protein 99.9 6.3E-22 2.2E-26 111.6 8.2 62 24-85 18-79 (81)
32 1wh7_A ZF-HD homeobox family p 99.9 2.8E-22 9.7E-27 112.8 6.7 61 22-83 13-78 (80)
33 1x2n_A Homeobox protein pknox1 99.9 1.8E-21 6.2E-26 107.7 9.6 65 23-87 4-71 (73)
34 3rkq_A Homeobox protein NKX-2. 99.9 1E-21 3.5E-26 104.1 8.2 57 26-82 2-58 (58)
35 1akh_A Protein (mating-type pr 99.9 5E-22 1.7E-26 106.4 6.9 59 24-82 3-61 (61)
36 3a02_A Homeobox protein arista 99.9 6.5E-22 2.2E-26 105.7 7.2 58 29-86 2-59 (60)
37 2k40_A Homeobox expressed in E 99.9 1E-21 3.5E-26 107.0 7.9 61 27-87 2-62 (67)
38 2r5y_A Homeotic protein sex co 99.9 9.4E-22 3.2E-26 112.4 8.0 63 23-85 25-87 (88)
39 2hi3_A Homeodomain-only protei 99.9 2.5E-21 8.7E-26 107.1 9.4 63 27-89 3-66 (73)
40 1uhs_A HOP, homeodomain only p 99.9 2.1E-21 7.3E-26 107.2 8.8 63 27-89 2-65 (72)
41 2cuf_A FLJ21616 protein; homeo 99.9 2.6E-21 8.7E-26 112.0 9.2 67 22-88 3-84 (95)
42 2da5_A Zinc fingers and homeob 99.9 2.9E-21 9.8E-26 107.4 9.0 62 28-89 9-70 (75)
43 1b72_A Protein (homeobox prote 99.9 1.9E-21 6.6E-26 112.9 8.4 65 23-87 31-95 (97)
44 3a03_A T-cell leukemia homeobo 99.9 2E-21 6.9E-26 102.5 7.7 54 31-84 2-55 (56)
45 2dmn_A Homeobox protein TGIF2L 99.9 6.1E-21 2.1E-25 108.0 10.1 68 23-90 4-74 (83)
46 2ecc_A Homeobox and leucine zi 99.9 2.3E-21 7.9E-26 107.7 8.0 58 30-87 7-64 (76)
47 2ly9_A Zinc fingers and homeob 99.9 3.5E-21 1.2E-25 106.7 8.7 63 25-87 5-67 (74)
48 3nar_A ZHX1, zinc fingers and 99.9 1.8E-21 6.1E-26 112.9 7.8 63 23-85 22-84 (96)
49 2dn0_A Zinc fingers and homeob 99.9 2.5E-21 8.7E-26 107.9 8.0 63 26-88 8-70 (76)
50 1puf_B PRE-B-cell leukemia tra 99.8 5.8E-21 2E-25 105.6 8.2 62 27-88 2-66 (73)
51 1wi3_A DNA-binding protein SAT 99.8 1.2E-20 4.1E-25 102.0 7.8 60 22-81 3-63 (71)
52 1du6_A PBX1, homeobox protein 99.8 4E-21 1.4E-25 103.8 6.0 58 26-83 3-63 (64)
53 3d1n_I POU domain, class 6, tr 99.8 9.3E-21 3.2E-25 117.7 8.1 69 15-83 82-150 (151)
54 1b72_B Protein (PBX1); homeodo 99.8 2.3E-20 7.9E-25 106.3 8.7 62 27-88 2-66 (87)
55 1k61_A Mating-type protein alp 99.8 1.9E-20 6.4E-25 100.0 7.6 55 30-84 2-59 (60)
56 1mnm_C Protein (MAT alpha-2 tr 99.8 1.4E-20 4.7E-25 107.3 7.4 59 24-82 25-86 (87)
57 2dmp_A Zinc fingers and homeob 99.8 7.7E-20 2.6E-24 104.7 9.7 57 32-88 19-75 (89)
58 2da6_A Hepatocyte nuclear fact 99.8 6E-20 2.1E-24 107.0 9.2 65 23-87 3-88 (102)
59 2ecb_A Zinc fingers and homeob 99.8 5.7E-20 2E-24 105.1 8.9 55 32-86 17-71 (89)
60 2xsd_C POU domain, class 3, tr 99.8 1.4E-20 4.8E-25 118.4 6.9 66 23-88 96-161 (164)
61 1e3o_C Octamer-binding transcr 99.8 2.3E-20 7.9E-25 116.9 7.3 61 24-84 99-159 (160)
62 3nau_A Zinc fingers and homeob 99.8 3.8E-20 1.3E-24 99.9 7.2 53 34-86 12-64 (66)
63 1au7_A Protein PIT-1, GHF-1; c 99.8 3.4E-20 1.2E-24 114.6 7.5 62 23-84 84-145 (146)
64 2l9r_A Homeobox protein NKX-3. 99.8 5E-20 1.7E-24 100.9 7.0 59 30-88 8-66 (69)
65 1le8_B Mating-type protein alp 99.8 8.5E-20 2.9E-24 103.2 7.9 59 28-86 4-65 (83)
66 2cqx_A LAG1 longevity assuranc 99.8 2.9E-20 1E-24 102.6 5.1 59 27-85 9-68 (72)
67 1lfb_A Liver transcription fac 99.8 7.2E-20 2.5E-24 106.6 6.3 64 23-86 6-90 (99)
68 2e19_A Transcription factor 8; 99.8 2.6E-19 9E-24 96.7 6.9 53 31-83 8-60 (64)
69 3l1p_A POU domain, class 5, tr 99.8 2.3E-19 7.8E-24 111.9 7.2 61 24-84 94-154 (155)
70 1x2m_A LAG1 longevity assuranc 99.8 3.3E-19 1.1E-23 96.1 5.9 51 35-85 9-60 (64)
71 2d5v_A Hepatocyte nuclear fact 99.8 3.1E-19 1.1E-23 112.0 6.8 65 23-87 94-158 (164)
72 3k2a_A Homeobox protein MEIS2; 99.8 8.5E-19 2.9E-23 95.5 6.9 59 31-89 3-64 (67)
73 1ic8_A Hepatocyte nuclear fact 99.7 1.4E-17 4.9E-22 106.9 4.3 61 23-83 112-193 (194)
74 2lk2_A Homeobox protein TGIF1; 99.7 3.1E-16 1.1E-20 89.3 7.0 57 31-87 10-69 (89)
75 2da7_A Zinc finger homeobox pr 99.6 8.2E-16 2.8E-20 83.5 6.7 46 35-80 14-59 (71)
76 2h8r_A Hepatocyte nuclear fact 99.6 4.3E-16 1.5E-20 101.4 6.7 60 22-81 138-218 (221)
77 1mh3_A Maltose binding-A1 home 99.5 1E-14 3.6E-19 101.0 5.5 55 28-82 367-421 (421)
78 2nzz_A Penetratin conjugated G 98.9 5.5E-11 1.9E-15 57.1 -2.2 22 68-89 1-22 (37)
79 2ys9_A Homeobox and leucine zi 97.1 0.0011 3.9E-08 35.5 4.8 41 37-77 17-57 (70)
80 2glo_A Brinker CG9653-PA; prot 92.6 0.27 9.4E-06 24.7 4.3 45 30-75 3-47 (59)
81 1hlv_A CENP-B, major centromer 91.4 1.2 4.2E-05 25.5 6.9 49 29-80 4-52 (131)
82 2elh_A CG11849-PA, LD40883P; s 88.2 1.9 6.6E-05 23.2 8.6 45 27-76 17-61 (87)
83 3hug_A RNA polymerase sigma fa 87.6 2.2 7.4E-05 23.1 6.2 49 33-86 38-86 (92)
84 2jn6_A Protein CGL2762, transp 84.3 3.5 0.00012 22.4 5.9 42 31-76 4-46 (97)
85 2o8x_A Probable RNA polymerase 82.2 3.4 0.00011 20.7 5.7 48 32-84 15-62 (70)
86 1p4w_A RCSB; solution structur 80.7 5.5 0.00019 22.1 5.8 46 30-81 32-77 (99)
87 1s7o_A Hypothetical UPF0122 pr 78.6 7 0.00024 22.2 6.3 48 32-84 22-69 (113)
88 1je8_A Nitrate/nitrite respons 78.1 5.8 0.0002 20.9 6.1 47 31-83 20-66 (82)
89 1tc3_C Protein (TC3 transposas 77.8 3.7 0.00013 18.6 5.7 39 32-75 5-43 (51)
90 3mzy_A RNA polymerase sigma-H 77.8 7.8 0.00027 22.3 6.8 32 55-86 126-157 (164)
91 3c57_A Two component transcrip 76.8 7 0.00024 21.2 6.6 47 31-83 26-72 (95)
92 2rnj_A Response regulator prot 76.8 6.2 0.00021 21.1 4.6 47 31-83 28-74 (91)
93 1x3u_A Transcriptional regulat 76.2 6.1 0.00021 20.2 5.3 45 33-83 17-61 (79)
94 2p7v_B Sigma-70, RNA polymeras 76.1 5.8 0.0002 19.9 6.1 52 32-84 5-56 (68)
95 2rn7_A IS629 ORFA; helix, all 75.9 7.8 0.00027 21.3 5.6 46 31-76 5-53 (108)
96 1rp3_A RNA polymerase sigma fa 75.4 12 0.0004 23.0 6.2 48 33-85 188-235 (239)
97 1ku3_A Sigma factor SIGA; heli 74.7 6.7 0.00023 20.0 6.0 50 32-82 10-59 (73)
98 2jpc_A SSRB; DNA binding prote 74.6 5.4 0.00018 19.4 3.7 26 57-82 17-42 (61)
99 1or7_A Sigma-24, RNA polymeras 74.4 11 0.00038 22.4 6.1 31 56-86 159-189 (194)
100 1tty_A Sigma-A, RNA polymerase 74.2 7.9 0.00027 20.6 5.7 51 32-83 18-68 (87)
101 2x7l_M HIV REV; nuclear export 74.1 2.9 9.8E-05 24.3 2.7 37 38-88 15-51 (115)
102 1jko_C HIN recombinase, DNA-in 74.0 1.5 5.2E-05 20.4 1.4 39 33-76 6-44 (52)
103 2hin_A GP39, repressor protein 73.6 4.3 0.00015 21.4 3.2 22 56-77 13-34 (71)
104 2qko_A Possible transcriptiona 73.4 1.8 6E-05 26.3 1.9 42 39-81 35-76 (215)
105 1iuf_A Centromere ABP1 protein 72.9 9 0.00031 22.5 4.9 52 27-78 6-61 (144)
106 1xsv_A Hypothetical UPF0122 pr 72.7 11 0.00036 21.3 6.2 49 32-85 25-73 (113)
107 2pmy_A RAS and EF-hand domain- 72.6 6.3 0.00022 20.7 3.9 45 31-75 19-68 (91)
108 3bd1_A CRO protein; transcript 71.9 4.1 0.00014 21.1 2.9 23 56-78 14-36 (79)
109 1fse_A GERE; helix-turn-helix 71.3 8 0.00027 19.4 6.5 47 30-82 9-55 (74)
110 1fi6_A EH domain protein REPS1 70.5 10 0.00034 20.2 5.1 44 32-75 2-50 (92)
111 2rgt_A Fusion of LIM/homeobox 69.6 0.029 9.8E-07 34.5 -7.0 30 24-53 134-163 (169)
112 3g7r_A Putative transcriptiona 69.2 4.1 0.00014 24.9 2.9 38 41-79 44-81 (221)
113 1c07_A Protein (epidermal grow 69.1 11 0.00037 20.2 4.4 43 33-75 4-51 (95)
114 3lph_A Protein REV; helix-loop 68.8 3 0.0001 22.2 1.8 37 38-88 18-54 (72)
115 3ulq_B Transcriptional regulat 67.3 13 0.00044 20.1 6.5 48 28-81 25-72 (90)
116 3i5g_B Myosin regulatory light 65.6 17 0.0006 21.1 5.6 38 30-67 7-49 (153)
117 2x48_A CAG38821; archeal virus 65.2 6.7 0.00023 18.7 2.7 36 35-75 18-53 (55)
118 2lfw_A PHYR sigma-like domain; 65.0 8.4 0.00029 22.6 3.6 50 32-86 93-142 (157)
119 2xi8_A Putative transcription 64.5 4.3 0.00015 19.7 2.0 23 56-78 17-39 (66)
120 2r1j_L Repressor protein C2; p 63.8 4.6 0.00016 19.8 2.0 23 56-78 21-43 (68)
121 3fmy_A HTH-type transcriptiona 63.8 13 0.00044 18.9 4.5 41 31-78 9-49 (73)
122 3bni_A Putative TETR-family tr 62.9 1.9 6.4E-05 26.7 0.4 37 42-79 53-89 (229)
123 3clo_A Transcriptional regulat 61.7 28 0.00096 22.1 6.4 47 31-83 196-242 (258)
124 1rzs_A Antirepressor, regulato 61.4 6.4 0.00022 19.6 2.3 19 56-74 13-31 (61)
125 1zug_A Phage 434 CRO protein; 60.8 5.4 0.00018 19.7 1.9 23 56-78 19-41 (71)
126 3bs3_A Putative DNA-binding pr 60.3 5.8 0.0002 19.9 2.1 23 56-78 26-48 (76)
127 2lv7_A Calcium-binding protein 58.4 20 0.0007 19.4 7.5 46 30-75 27-79 (100)
128 2hxi_A Putative transcriptiona 58.3 7.9 0.00027 24.4 2.8 49 30-79 26-75 (241)
129 2q0o_A Probable transcriptiona 58.3 31 0.0011 21.5 6.5 46 31-82 174-219 (236)
130 1adr_A P22 C2 repressor; trans 58.0 6.5 0.00022 19.7 2.0 23 56-78 21-43 (76)
131 2lhi_A Calmodulin, serine/thre 57.9 11 0.00036 22.6 3.2 45 30-74 2-53 (176)
132 2wiu_B HTH-type transcriptiona 57.8 11 0.00039 19.4 3.0 23 56-78 28-50 (88)
133 1r69_A Repressor protein CI; g 57.6 6.7 0.00023 19.2 2.0 23 56-78 17-39 (69)
134 3o9x_A Uncharacterized HTH-typ 57.5 21 0.00071 20.2 4.3 23 56-78 87-109 (133)
135 3omt_A Uncharacterized protein 57.4 6.8 0.00023 19.7 2.0 22 56-77 24-45 (73)
136 2b5a_A C.BCLI; helix-turn-heli 57.0 7.1 0.00024 19.6 2.0 23 56-78 26-48 (77)
137 3kz3_A Repressor protein CI; f 57.0 6.6 0.00023 20.2 1.9 24 56-79 28-51 (80)
138 1j9i_A GPNU1 DBD;, terminase s 55.5 12 0.0004 18.9 2.7 22 56-77 5-26 (68)
139 1u78_A TC3 transposase, transp 55.1 26 0.00089 19.6 5.7 41 31-76 5-45 (141)
140 2q24_A Putative TETR family tr 54.9 5.5 0.00019 23.6 1.6 40 38-79 21-60 (194)
141 2ict_A Antitoxin HIGA; helix-t 54.7 11 0.00036 20.0 2.6 23 56-78 24-46 (94)
142 3dcf_A Transcriptional regulat 54.3 5.8 0.0002 23.7 1.6 40 39-79 38-77 (218)
143 2a6c_A Helix-turn-helix motif; 54.1 9.6 0.00033 19.8 2.3 23 56-78 34-56 (83)
144 3b7h_A Prophage LP1 protein 11 53.8 8.1 0.00028 19.5 1.9 23 56-78 23-45 (78)
145 1y7y_A C.AHDI; helix-turn-heli 53.7 8.7 0.0003 19.1 2.0 23 56-78 29-51 (74)
146 2qwt_A Transcriptional regulat 53.3 8.5 0.00029 22.9 2.2 38 40-79 21-58 (196)
147 2kpj_A SOS-response transcript 52.6 8.8 0.0003 20.4 2.0 23 56-78 25-47 (94)
148 1l3l_A Transcriptional activat 52.3 40 0.0014 21.0 6.7 47 30-82 171-217 (234)
149 2i10_A Putative TETR transcrip 51.6 16 0.00055 21.8 3.3 44 37-81 16-59 (202)
150 1pdn_C Protein (PRD paired); p 50.6 23 0.00079 19.3 3.7 41 32-77 17-57 (128)
151 2pij_A Prophage PFL 6 CRO; tra 50.4 15 0.00053 17.9 2.7 22 56-77 16-37 (67)
152 2jml_A DNA binding domain/tran 50.0 11 0.00038 19.8 2.1 20 56-75 8-27 (81)
153 3gzi_A Transcriptional regulat 49.9 16 0.00055 21.7 3.1 39 41-80 26-64 (218)
154 2pz9_A Putative regulatory pro 49.3 2.4 8.1E-05 26.1 -0.8 42 38-80 36-77 (226)
155 3lsg_A Two-component response 48.6 22 0.00076 19.1 3.3 23 55-77 21-43 (103)
156 2ef8_A C.ECOT38IS, putative tr 48.4 12 0.0004 19.1 2.1 23 56-78 26-48 (84)
157 3t72_q RNA polymerase sigma fa 47.3 35 0.0012 18.8 6.1 52 32-84 19-70 (99)
158 3i5g_C Myosin catalytic light 46.3 22 0.00074 20.8 3.2 36 32-67 2-44 (159)
159 3f6w_A XRE-family like protein 46.2 13 0.00044 19.0 2.0 23 56-78 30-52 (83)
160 3i9v_2 NADH-quinone oxidoreduc 46.1 34 0.0012 21.1 4.2 35 37-71 27-61 (181)
161 1x57_A Endothelial differentia 46.1 17 0.00057 19.0 2.5 23 56-78 29-51 (91)
162 2k9q_A Uncharacterized protein 45.9 12 0.00041 19.0 1.8 23 56-78 18-40 (77)
163 2opo_A Polcalcin CHE A 3; calc 45.5 29 0.00099 17.4 4.2 44 32-75 4-53 (86)
164 2hku_A A putative transcriptio 45.5 9.4 0.00032 22.9 1.5 40 39-80 27-66 (215)
165 2v79_A DNA replication protein 45.3 44 0.0015 19.5 4.8 45 33-80 30-78 (135)
166 2guh_A Putative TETR-family tr 45.0 20 0.00069 21.7 3.0 39 41-80 48-86 (214)
167 1lmb_3 Protein (lambda repress 44.2 14 0.00049 19.3 2.0 23 56-78 33-55 (92)
168 2fq4_A Transcriptional regulat 44.2 13 0.00045 21.9 2.0 40 41-81 21-60 (192)
169 3t76_A VANU, transcriptional r 43.6 15 0.00051 19.8 2.0 23 56-78 40-62 (88)
170 2cw1_A SN4M; lambda CRO fold, 43.5 18 0.00063 18.5 2.3 21 56-76 16-36 (65)
171 1uxc_A FRUR (1-57), fructose r 42.9 24 0.00081 17.9 2.7 23 56-78 3-25 (65)
172 1y66_A Engrailed homeodomain; 42.2 6.6 0.00022 18.8 0.3 37 40-76 11-47 (52)
173 2ewt_A BLDD, putative DNA-bind 41.9 22 0.00074 17.4 2.4 23 56-78 24-48 (71)
174 2ktg_A Calmodulin, putative; e 41.8 34 0.0011 17.1 4.5 45 31-75 6-57 (85)
175 3s8q_A R-M controller protein; 41.5 17 0.00058 18.5 2.0 23 56-78 27-49 (82)
176 3op9_A PLI0006 protein; struct 41.3 21 0.00073 19.5 2.5 23 56-78 25-47 (114)
177 2rek_A Putative TETR-family tr 41.3 8.1 0.00028 22.9 0.7 39 39-79 23-61 (199)
178 2q1z_A RPOE, ECF SIGE; ECF sig 41.2 6.8 0.00023 23.2 0.4 27 58-84 156-182 (184)
179 3qq6_A HTH-type transcriptiona 40.9 27 0.00093 17.8 2.8 21 56-76 26-46 (78)
180 3u0k_A Rcamp; fluorescent prot 40.9 77 0.0026 22.6 5.7 46 30-75 293-345 (440)
181 1irz_A ARR10-B; helix-turn-hel 40.0 39 0.0013 17.4 5.7 57 27-83 4-62 (64)
182 1r8d_A Transcription activator 39.9 26 0.0009 19.4 2.8 20 56-75 5-24 (109)
183 2vz4_A Tipal, HTH-type transcr 39.2 28 0.00095 19.2 2.8 21 56-76 4-24 (108)
184 2ppx_A AGR_C_3184P, uncharacte 38.7 29 0.001 18.5 2.8 23 56-78 46-68 (99)
185 1t33_A Putative transcriptiona 38.5 14 0.00048 22.2 1.5 38 41-80 21-58 (224)
186 3jsj_A Putative TETR-family tr 38.0 16 0.00053 21.3 1.7 41 38-80 15-55 (190)
187 3c3w_A Two component transcrip 37.9 67 0.0023 19.5 5.0 45 31-81 148-192 (225)
188 2l49_A C protein; P2 bacteriop 37.9 16 0.00054 19.4 1.6 23 56-78 20-42 (99)
189 3fiw_A Putative TETR-family tr 37.7 10 0.00035 23.3 0.8 50 30-80 22-72 (211)
190 3kkd_A Transcriptional regulat 37.4 6.3 0.00021 24.2 -0.2 39 41-80 44-82 (237)
191 1j7q_A CAVP, calcium vector pr 37.0 42 0.0014 16.8 5.7 45 31-75 6-60 (86)
192 2ofy_A Putative XRE-family tra 36.9 22 0.00075 18.3 2.0 23 56-78 30-52 (86)
193 3vpr_A Transcriptional regulat 36.9 26 0.0009 20.4 2.6 42 39-81 10-51 (190)
194 3mlf_A Transcriptional regulat 36.4 28 0.00094 19.3 2.5 23 56-78 39-61 (111)
195 2iai_A Putative transcriptiona 36.4 14 0.00046 22.6 1.2 41 38-79 36-76 (230)
196 3ppb_A Putative TETR family tr 36.2 26 0.00088 20.2 2.4 41 38-79 15-55 (195)
197 1zs4_A Regulatory protein CII; 35.8 33 0.0011 18.6 2.6 21 56-76 27-47 (83)
198 3ivp_A Putative transposon-rel 35.7 27 0.00091 19.5 2.4 23 56-78 28-50 (126)
199 2joj_A Centrin protein; N-term 35.4 41 0.0014 16.3 4.2 43 33-75 1-50 (77)
200 3nxc_A HTH-type protein SLMA; 35.1 9.8 0.00034 22.5 0.4 35 44-79 37-71 (212)
201 3q0w_A HTH-type transcriptiona 34.8 8.5 0.00029 23.7 0.1 39 41-80 53-91 (236)
202 1dtl_A Cardiac troponin C; hel 33.9 63 0.0022 18.0 5.4 45 31-75 10-62 (161)
203 2b3g_B Cellular tumor antigen 33.7 26 0.00088 14.7 1.5 13 63-75 11-23 (28)
204 1xwr_A Regulatory protein CII; 33.6 26 0.00088 19.5 2.0 20 56-75 26-45 (97)
205 2eby_A Putative HTH-type trans 33.4 26 0.00088 19.1 2.0 23 56-78 27-49 (113)
206 1etf_B REV peptide; complex (R 33.3 23 0.00077 15.0 1.3 14 75-88 7-20 (26)
207 3szt_A QCSR, quorum-sensing co 33.3 89 0.0031 19.5 6.5 44 32-81 175-218 (237)
208 3cec_A Putative antidote prote 33.1 27 0.00091 18.8 2.0 23 56-78 34-56 (104)
209 1b0n_A Protein (SINR protein); 33.0 27 0.00092 18.8 2.0 21 56-76 17-37 (111)
210 2hyt_A TETR-family transcripti 32.6 29 0.00099 20.4 2.3 40 39-79 19-58 (197)
211 2wui_A MEXZ, transcriptional r 32.5 30 0.001 20.6 2.4 39 41-80 20-58 (210)
212 3oou_A LIN2118 protein; protei 32.4 49 0.0017 17.8 3.1 22 55-76 23-44 (108)
213 3lfp_A CSP231I C protein; tran 32.4 37 0.0013 18.0 2.5 23 56-78 17-43 (98)
214 1neq_A DNA-binding protein NER 32.1 37 0.0013 17.5 2.4 21 56-76 25-45 (74)
215 1q06_A Transcriptional regulat 32.1 40 0.0014 19.5 2.8 20 56-75 3-22 (135)
216 3mse_B Calcium-dependent prote 32.1 76 0.0026 18.4 4.5 41 35-75 35-80 (180)
217 3bru_A Regulatory protein, TET 32.1 32 0.0011 20.4 2.4 41 38-79 36-76 (222)
218 3kz9_A SMCR; transcriptional r 31.9 30 0.001 20.1 2.3 39 40-79 25-63 (206)
219 2qtq_A Transcriptional regulat 31.8 35 0.0012 20.0 2.6 41 38-79 22-62 (213)
220 3gp4_A Transcriptional regulat 31.7 40 0.0014 19.7 2.7 20 56-75 5-24 (142)
221 3eus_A DNA-binding protein; st 31.6 30 0.001 18.0 2.0 23 56-78 30-52 (86)
222 3bqz_B HTH-type transcriptiona 31.6 27 0.00092 20.2 2.0 41 38-79 8-48 (194)
223 3g1o_A Transcriptional regulat 31.5 14 0.00048 22.9 0.7 41 39-80 50-90 (255)
224 2zcm_A Biofilm operon icaabcd 31.3 26 0.0009 20.4 1.9 41 38-79 13-53 (192)
225 3hh0_A Transcriptional regulat 31.3 42 0.0014 19.8 2.8 20 56-75 7-26 (146)
226 2d6y_A Putative TETR family re 31.2 36 0.0012 20.2 2.5 42 38-80 14-55 (202)
227 3qkx_A Uncharacterized HTH-typ 31.0 36 0.0012 19.4 2.5 40 39-79 15-54 (188)
228 3mn2_A Probable ARAC family tr 30.9 65 0.0022 17.2 3.7 22 55-76 20-41 (108)
229 1avs_A Troponin C; muscle cont 30.9 57 0.0019 16.5 5.1 44 32-75 13-63 (90)
230 3vib_A MTRR; helix-turn-helix 30.7 25 0.00086 20.9 1.8 39 41-80 19-57 (210)
231 2yve_A Transcriptional regulat 30.7 35 0.0012 19.9 2.4 41 38-79 10-50 (185)
232 1bjf_A Neurocalcin delta; calc 30.6 81 0.0028 18.2 4.1 26 50-75 7-32 (193)
233 3g5g_A Regulatory protein; tra 30.5 32 0.0011 18.6 2.0 23 56-78 44-66 (99)
234 2pjp_A Selenocysteine-specific 30.2 76 0.0026 17.7 3.8 23 55-77 22-44 (121)
235 3f1b_A TETR-like transcription 30.2 10 0.00035 22.2 -0.1 38 41-79 23-60 (203)
236 2fjr_A Repressor protein CI; g 29.9 35 0.0012 20.3 2.3 24 55-78 22-45 (189)
237 2d8n_A Recoverin; structural g 29.9 85 0.0029 18.5 4.1 21 55-75 20-40 (207)
238 2jrt_A Uncharacterized protein 29.6 74 0.0025 17.4 5.0 42 30-76 30-72 (95)
239 2xdn_A HTH-type transcriptiona 29.5 23 0.0008 21.0 1.5 38 41-79 20-57 (210)
240 1eh2_A EPS15; calcium binding, 29.3 75 0.0026 17.4 5.8 45 31-75 7-55 (106)
241 4aci_A HTH-type transcriptiona 29.1 37 0.0013 19.6 2.3 37 42-79 24-60 (191)
242 3oio_A Transcriptional regulat 29.1 73 0.0025 17.2 4.2 23 54-76 24-46 (113)
243 2rae_A Transcriptional regulat 29.0 28 0.00097 20.4 1.8 40 38-78 23-62 (207)
244 2jj7_A Hemolysin II regulatory 28.9 37 0.0013 19.5 2.3 27 55-81 29-55 (186)
245 3f52_A CLP gene regulator (CLG 28.8 33 0.0011 18.8 1.9 23 56-78 44-66 (117)
246 3j04_B Myosin regulatory light 28.7 75 0.0026 17.2 5.2 34 33-66 1-39 (143)
247 2jt1_A PEFI protein; solution 28.7 43 0.0015 17.6 2.3 21 55-75 26-46 (77)
248 3lwj_A Putative TETR-family tr 28.6 29 0.001 20.2 1.8 39 40-79 20-58 (202)
249 3gpv_A Transcriptional regulat 28.4 48 0.0017 19.5 2.7 20 56-75 19-38 (148)
250 2eh3_A Transcriptional regulat 28.3 30 0.001 19.9 1.8 39 40-79 10-48 (179)
251 3trb_A Virulence-associated pr 28.2 36 0.0012 18.7 2.0 23 56-78 30-52 (104)
252 2jvl_A TRMBF1; coactivator, he 28.1 55 0.0019 17.8 2.8 23 56-78 52-74 (107)
253 3mkl_A HTH-type transcriptiona 27.9 63 0.0021 17.8 3.1 23 54-76 24-46 (120)
254 2v57_A TETR family transcripti 27.7 30 0.001 20.0 1.7 35 42-79 24-58 (190)
255 2a6h_F RNA polymerase sigma fa 27.7 1.2E+02 0.004 21.1 4.9 49 33-82 361-409 (423)
256 2mys_B Myosin; muscle protein, 27.5 87 0.003 17.6 6.1 45 32-76 18-70 (166)
257 3vk0_A NHTF, transcriptional r 27.5 56 0.0019 17.8 2.8 23 56-78 37-59 (114)
258 3dew_A Transcriptional regulat 27.4 34 0.0012 19.8 1.9 40 39-79 15-54 (206)
259 4ghj_A Probable transcriptiona 27.3 57 0.002 17.9 2.7 22 56-77 52-73 (101)
260 1l0o_C Sigma factor; bergerat 27.2 13 0.00045 22.8 0.0 28 53-80 214-241 (243)
261 2kgr_A Intersectin-1; structur 27.2 82 0.0028 17.2 5.3 45 31-75 6-55 (111)
262 1l9z_H Sigma factor SIGA; heli 27.0 1.7E+02 0.0057 20.7 5.7 49 33-82 376-424 (438)
263 2ovg_A Phage lambda CRO; trans 26.9 64 0.0022 16.3 2.7 20 56-75 16-35 (66)
264 3knw_A Putative transcriptiona 26.8 33 0.0011 20.1 1.8 39 40-79 22-60 (212)
265 2o7t_A Transcriptional regulat 26.8 28 0.00097 20.4 1.5 39 40-79 16-54 (199)
266 3qbm_A TETR transcriptional re 26.8 22 0.00075 20.7 1.0 39 40-79 15-53 (199)
267 3kxa_A NGO0477 protein, putati 26.7 48 0.0017 19.2 2.5 23 56-78 84-106 (141)
268 3qp6_A CVIR transcriptional re 26.6 1.3E+02 0.0044 19.2 7.7 46 31-82 196-241 (265)
269 1qbj_A Protein (double-strande 26.6 77 0.0026 16.7 3.1 20 56-75 30-49 (81)
270 3vp5_A Transcriptional regulat 26.4 46 0.0016 19.5 2.4 40 39-79 19-58 (189)
271 3egq_A TETR family transcripti 26.2 30 0.001 19.7 1.5 39 40-79 12-50 (170)
272 3bhq_A Transcriptional regulat 26.2 48 0.0016 19.6 2.5 39 41-80 21-59 (211)
273 3anp_C Transcriptional repress 26.1 31 0.001 20.4 1.5 39 40-79 17-55 (204)
274 2zhg_A Redox-sensitive transcr 26.1 57 0.0019 19.4 2.7 21 56-76 14-34 (154)
275 3loc_A HTH-type transcriptiona 26.0 31 0.0011 20.2 1.6 33 45-78 31-63 (212)
276 3hta_A EBRA repressor; TETR fa 25.9 14 0.00048 22.4 -0.0 40 40-80 36-75 (217)
277 1pb6_A Hypothetical transcript 25.8 35 0.0012 20.0 1.8 38 41-79 27-64 (212)
278 3pas_A TETR family transcripti 25.7 31 0.0011 19.8 1.5 25 55-79 30-54 (195)
279 2zcx_A SCO7815, TETR-family tr 25.6 34 0.0012 21.0 1.7 39 40-79 31-69 (231)
280 1vi0_A Transcriptional regulat 25.6 22 0.00075 21.2 0.8 41 38-79 14-54 (206)
281 2nx4_A Transcriptional regulat 25.5 36 0.0012 20.0 1.8 38 42-80 20-57 (194)
282 1u8b_A ADA polyprotein; protei 25.5 73 0.0025 17.9 3.1 23 54-76 94-116 (133)
283 3c07_A Putative TETR-family tr 25.4 45 0.0015 21.1 2.3 40 40-80 49-88 (273)
284 2l8n_A Transcriptional repress 25.2 30 0.001 17.6 1.2 22 56-77 12-33 (67)
285 1a04_A Nitrate/nitrite respons 25.0 1.1E+02 0.0039 18.0 5.6 46 31-82 153-198 (215)
286 2hxo_A Putative TETR-family tr 25.0 32 0.0011 21.4 1.5 49 30-79 13-62 (237)
287 3c2b_A Transcriptional regulat 24.9 48 0.0017 19.6 2.3 42 39-81 22-63 (221)
288 2kn2_A Calmodulin; S MAPK phos 24.9 76 0.0026 16.0 4.7 41 35-75 5-52 (92)
289 2lmt_A Calmodulin-related prot 24.7 45 0.0015 18.8 2.1 43 32-74 3-52 (148)
290 1aih_A HP1 integrase; DNA inte 24.6 1.1E+02 0.0036 17.5 6.5 41 30-70 4-44 (170)
291 3lhq_A Acrab operon repressor 24.5 38 0.0013 19.8 1.8 39 40-79 22-60 (220)
292 3f0c_A TETR-molecule A, transc 24.3 38 0.0013 20.0 1.7 41 38-79 17-57 (216)
293 1qgp_A Protein (double strande 24.2 83 0.0029 16.2 3.1 21 55-75 33-53 (77)
294 3dpj_A Transcription regulator 24.0 41 0.0014 19.5 1.8 39 41-80 17-55 (194)
295 3bjb_A Probable transcriptiona 23.8 35 0.0012 20.4 1.5 42 39-81 29-70 (207)
296 2ibd_A Possible transcriptiona 23.7 38 0.0013 20.0 1.6 39 41-80 23-61 (204)
297 3on4_A Transcriptional regulat 23.5 37 0.0013 19.4 1.6 41 38-79 16-56 (191)
298 3kkc_A TETR family transcripti 23.5 28 0.00094 19.9 1.0 40 39-79 19-58 (177)
299 2ovk_B RLC, myosin regulatory 23.4 1E+02 0.0035 17.0 5.4 46 30-75 7-59 (153)
300 3v6g_A Probable transcriptiona 23.4 32 0.0011 20.7 1.3 40 39-79 21-60 (208)
301 1ui5_A A-factor receptor homol 23.3 42 0.0014 20.1 1.8 41 38-79 15-55 (215)
302 2g3b_A Putative TETR-family tr 23.2 51 0.0018 19.6 2.2 25 56-80 26-50 (208)
303 2k9s_A Arabinose operon regula 23.1 94 0.0032 16.6 3.1 22 55-76 22-43 (107)
304 2o38_A Hypothetical protein; a 23.0 50 0.0017 18.6 2.0 23 56-78 56-78 (120)
305 2gfn_A HTH-type transcriptiona 23.0 41 0.0014 20.1 1.7 37 42-79 19-55 (209)
306 2qib_A TETR-family transcripti 22.9 36 0.0012 20.7 1.4 40 40-80 21-60 (231)
307 4epz_A Transcription anti-term 22.9 62 0.0021 19.8 2.4 23 30-52 133-157 (162)
308 3o48_A Mitochondria fission 1 22.8 1.3E+02 0.0043 17.8 4.1 33 31-63 16-50 (134)
309 2f07_A YVDT; helix-turn-helix, 22.8 36 0.0012 20.1 1.4 40 38-78 16-55 (197)
310 1sgm_A Putative HTH-type trans 22.8 35 0.0012 19.5 1.3 41 38-79 12-53 (191)
311 3b81_A Transcriptional regulat 22.8 29 0.00099 20.2 1.0 39 40-79 19-57 (203)
312 2id6_A Transcriptional regulat 22.7 54 0.0018 19.3 2.2 38 42-80 15-52 (202)
313 3cdl_A Transcriptional regulat 22.7 29 0.00098 20.6 0.9 40 41-81 18-57 (203)
314 3k2z_A LEXA repressor; winged 22.7 1.3E+02 0.0044 18.2 4.0 41 33-75 3-46 (196)
315 1jhf_A LEXA repressor; LEXA SO 22.6 1.1E+02 0.0037 18.5 3.6 40 33-75 4-48 (202)
316 3ccy_A Putative TETR-family tr 22.6 25 0.00084 20.8 0.6 41 38-79 20-60 (203)
317 2gen_A Probable transcriptiona 22.5 50 0.0017 19.4 2.0 42 38-80 13-54 (197)
318 2g7g_A RHA04620, putative tran 22.5 31 0.0011 21.0 1.1 45 33-80 11-56 (213)
319 2dg7_A Putative transcriptiona 22.3 34 0.0012 19.9 1.2 41 38-79 13-53 (195)
320 3crj_A Transcription regulator 22.1 29 0.001 20.5 0.9 39 40-79 22-60 (199)
321 3frq_A Repressor protein MPHR( 22.1 58 0.002 18.9 2.3 40 39-79 15-54 (195)
322 2of7_A Putative TETR-family tr 22.0 43 0.0015 20.8 1.7 38 41-79 57-94 (260)
323 2jpf_A Hypothetical protein; a 22.0 36 0.0012 19.0 1.1 10 68-77 52-61 (127)
324 2k27_A Paired box protein PAX- 22.0 1.2E+02 0.0042 17.4 6.7 48 31-78 82-136 (159)
325 2ao9_A Phage protein; structur 21.9 79 0.0027 19.1 2.8 22 55-76 50-71 (155)
326 3qrx_A Centrin; calcium-bindin 21.5 1.2E+02 0.004 17.0 5.6 49 27-75 16-71 (169)
327 1iq3_A Ralbp1-interacting prot 21.5 27 0.00092 19.4 0.6 45 31-75 14-63 (110)
328 3fwb_A Cell division control p 21.4 1.1E+02 0.0039 16.8 6.3 47 29-75 13-66 (161)
329 2l2e_A Calcium-binding protein 21.4 1.3E+02 0.0043 17.3 4.1 21 54-74 11-31 (190)
330 2np5_A Transcriptional regulat 21.3 43 0.0015 19.8 1.6 41 38-79 15-55 (203)
331 3rd3_A Probable transcriptiona 21.2 27 0.00093 20.2 0.6 41 38-79 16-56 (197)
332 1mij_A Protein prospero; homeo 21.2 1.4E+02 0.0049 17.8 5.0 54 31-84 2-58 (152)
333 2g7s_A Transcriptional regulat 21.1 45 0.0015 19.1 1.6 38 41-79 17-54 (194)
334 1rkt_A Protein YFIR; transcrip 21.0 31 0.0011 20.4 0.9 38 41-79 21-58 (205)
335 3e7q_A Transcriptional regulat 20.9 44 0.0015 19.5 1.6 25 55-79 36-60 (215)
336 2w53_A Repressor, SMet; antibi 20.8 33 0.0011 20.5 0.9 41 38-79 17-57 (219)
337 2g7l_A TETR-family transcripti 20.8 45 0.0015 20.9 1.6 50 30-80 16-66 (243)
338 3cwr_A Transcriptional regulat 20.7 46 0.0016 19.3 1.6 36 43-79 28-63 (208)
339 2mys_C Myosin; muscle protein, 20.6 1.1E+02 0.0039 16.5 6.0 43 33-75 2-51 (149)
340 3hot_A Transposable element ma 20.4 1.8E+02 0.0063 18.8 5.8 30 48-77 21-53 (345)
341 3npi_A TETR family regulatory 20.4 64 0.0022 19.7 2.3 41 39-80 25-65 (251)
342 2oer_A Probable transcriptiona 20.3 46 0.0016 19.8 1.6 42 38-80 27-71 (214)
343 1w8x_P Protein P16, protein S, 20.3 39 0.0013 18.6 1.1 10 70-79 19-28 (117)
344 3he0_A Transcriptional regulat 20.3 34 0.0012 19.7 0.9 42 37-79 16-57 (196)
345 2x4h_A Hypothetical protein SS 20.2 94 0.0032 17.3 2.8 44 32-75 10-53 (139)
346 2kvr_A Ubiquitin carboxyl-term 20.2 19 0.00065 21.1 -0.3 23 56-78 72-94 (130)
347 2ras_A Transcriptional regulat 20.2 29 0.00098 20.5 0.6 39 41-80 20-58 (212)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=2.4e-23 Score=117.18 Aligned_cols=68 Identities=29% Similarity=0.434 Sum_probs=62.2
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhh
Q psy14049 19 IGMEPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVR 86 (93)
Q Consensus 19 ~~~~~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~ 86 (93)
.+...++.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+...
T Consensus 10 ~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 10 PGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp SCCCCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 34445677888999999999999999999999999999999999999999999999999999998654
No 2
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.90 E-value=3.8e-23 Score=117.21 Aligned_cols=69 Identities=29% Similarity=0.408 Sum_probs=62.7
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhh
Q psy14049 18 FIGMEPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVR 86 (93)
Q Consensus 18 ~~~~~~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~ 86 (93)
.....+.+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+..+
T Consensus 14 ~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 14 KEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CSCCCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred cCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 334455678889999999999999999999999999999999999999999999999999999998654
No 3
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=5.8e-23 Score=112.90 Aligned_cols=64 Identities=28% Similarity=0.458 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhh
Q psy14049 23 PSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVR 86 (93)
Q Consensus 23 ~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~ 86 (93)
..+.++.|+.|+.+|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++++...
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 4457888999999999999999999999999999999999999999999999999999998654
No 4
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=5.6e-23 Score=115.64 Aligned_cols=69 Identities=23% Similarity=0.415 Sum_probs=63.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhcccC
Q psy14049 22 EPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMMSK 90 (93)
Q Consensus 22 ~~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~~~ 90 (93)
.+++.++.|+.|+.+|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+.......
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~~ 71 (80)
T 2dms_A 3 SGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQN 71 (80)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccCC
Confidence 345678889999999999999999999999999999999999999999999999999999998766544
No 5
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=8.3e-23 Score=114.86 Aligned_cols=69 Identities=26% Similarity=0.548 Sum_probs=63.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhcccCC
Q psy14049 23 PSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMMSKG 91 (93)
Q Consensus 23 ~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~~~~ 91 (93)
.++.++.|+.|+.+|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+.......+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~~~ 72 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENG 72 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHHhcC
Confidence 445788899999999999999999999999999999999999999999999999999999987655443
No 6
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.89 E-value=3.2e-23 Score=113.97 Aligned_cols=65 Identities=22% Similarity=0.343 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhh
Q psy14049 22 EPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVR 86 (93)
Q Consensus 22 ~~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~ 86 (93)
...+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+...
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 3 SGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp SSCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 34567888999999999999999999999999999999999999999999999999999998654
No 7
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.89 E-value=3.1e-23 Score=116.54 Aligned_cols=67 Identities=28% Similarity=0.658 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhh
Q psy14049 20 GMEPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVR 86 (93)
Q Consensus 20 ~~~~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~ 86 (93)
+..+.+.++.|+.|+.+|+..|+..|..++||+..++..||..+||++.+|++||||+|+++|+...
T Consensus 11 ~~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 11 GEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 3345677889999999999999999999999999999999999999999999999999999998654
No 8
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.89 E-value=4.5e-23 Score=113.32 Aligned_cols=65 Identities=32% Similarity=0.506 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhh
Q psy14049 22 EPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVR 86 (93)
Q Consensus 22 ~~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~ 86 (93)
...+.++.|+.|+.+|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+...
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 44567888999999999999999999999999999999999999999999999999999998654
No 9
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.89 E-value=1.2e-22 Score=113.52 Aligned_cols=68 Identities=31% Similarity=0.395 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhccc
Q psy14049 22 EPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMMS 89 (93)
Q Consensus 22 ~~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~~ 89 (93)
.+.+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+......
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~ 72 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKG 72 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcccc
Confidence 35567888999999999999999999999999999999999999999999999999999998766544
No 10
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.89 E-value=4.2e-23 Score=113.42 Aligned_cols=66 Identities=27% Similarity=0.429 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhc
Q psy14049 22 EPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRM 87 (93)
Q Consensus 22 ~~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~ 87 (93)
...+.++.|+.|+.+|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++++....
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp SSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhccc
Confidence 345678889999999999999999999999999999999999999999999999999999986543
No 11
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.89 E-value=1.2e-22 Score=114.32 Aligned_cols=65 Identities=29% Similarity=0.523 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhc
Q psy14049 23 PSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRM 87 (93)
Q Consensus 23 ~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~ 87 (93)
..+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 44678889999999999999999999999999999999999999999999999999999997654
No 12
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.89 E-value=1.5e-22 Score=111.30 Aligned_cols=64 Identities=22% Similarity=0.310 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhh
Q psy14049 23 PSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVR 86 (93)
Q Consensus 23 ~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~ 86 (93)
..+.++.|+.|+.+|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+...
T Consensus 4 ~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 4 GSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 3456778899999999999999999999999999999999999999999999999999998654
No 13
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.89 E-value=1.1e-22 Score=117.33 Aligned_cols=70 Identities=26% Similarity=0.432 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhcccCC
Q psy14049 22 EPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMMSKG 91 (93)
Q Consensus 22 ~~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~~~~ 91 (93)
.+.+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+........
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~ 82 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREA 82 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHH
Confidence 3456788899999999999999999999999999999999999999999999999999999987665443
No 14
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.89 E-value=1.5e-22 Score=110.70 Aligned_cols=66 Identities=24% Similarity=0.434 Sum_probs=61.3
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhcccCC
Q psy14049 26 KRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMMSKG 91 (93)
Q Consensus 26 ~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~~~~ 91 (93)
+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++++........
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~~~~ 67 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKDQ 67 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcccccC
Confidence 577899999999999999999999999999999999999999999999999999999987765543
No 15
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=6.5e-23 Score=112.72 Aligned_cols=65 Identities=31% Similarity=0.464 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhh
Q psy14049 22 EPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVR 86 (93)
Q Consensus 22 ~~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~ 86 (93)
...+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++++...
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 3 SGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp SCCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 34567888999999999999999999999999999999999999999999999999999998654
No 16
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.88 E-value=7e-23 Score=111.41 Aligned_cols=64 Identities=31% Similarity=0.462 Sum_probs=59.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhcc
Q psy14049 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMM 88 (93)
Q Consensus 25 k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~ 88 (93)
+.++.|+.|+.+|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++++....+
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 65 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSIMM 65 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhhhc
Confidence 3577899999999999999999999999999999999999999999999999999999876543
No 17
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.88 E-value=3.3e-22 Score=111.73 Aligned_cols=66 Identities=23% Similarity=0.329 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhcc
Q psy14049 23 PSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMM 88 (93)
Q Consensus 23 ~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~ 88 (93)
.++.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++++..+..
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~~ 75 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 75 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhhc
Confidence 455778899999999999999999999999999999999999999999999999999999977643
No 18
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.88 E-value=1.6e-22 Score=109.06 Aligned_cols=60 Identities=30% Similarity=0.392 Sum_probs=56.0
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhh
Q psy14049 26 KRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTV 85 (93)
Q Consensus 26 ~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~ 85 (93)
.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++++..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 577889999999999999999999999999999999999999999999999999999863
No 19
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.88 E-value=1.1e-22 Score=109.47 Aligned_cols=60 Identities=27% Similarity=0.398 Sum_probs=53.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHh
Q psy14049 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84 (93)
Q Consensus 25 k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~ 84 (93)
+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++++.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 357789999999999999999999999999999999999999999999999999999985
No 20
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.88 E-value=2.3e-22 Score=111.41 Aligned_cols=67 Identities=19% Similarity=0.357 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhccc
Q psy14049 23 PSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMMS 89 (93)
Q Consensus 23 ~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~~ 89 (93)
..+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+......
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 70 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcccC
Confidence 3456788999999999999999999999999999999999999999999999999999999765543
No 21
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.88 E-value=1.6e-22 Score=108.44 Aligned_cols=58 Identities=31% Similarity=0.579 Sum_probs=53.2
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhH
Q psy14049 26 KRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKN 83 (93)
Q Consensus 26 ~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr 83 (93)
.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5778899999999999999999999999999999999999999999999999999987
No 22
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.88 E-value=1.6e-22 Score=113.87 Aligned_cols=61 Identities=23% Similarity=0.425 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhh----CCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhH
Q psy14049 23 PSKKRKRRTSFTPQALELLNAHFER----NTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKN 83 (93)
Q Consensus 23 ~~k~rr~r~~~t~~q~~~L~~~f~~----~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr 83 (93)
..++++.|+.|+.+|+..|+..|.. ++||+..++.+||..+||++.+|+|||||+|+++++
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 4567888999999999999999999 999999999999999999999999999999999875
No 23
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.88 E-value=2.6e-22 Score=113.12 Aligned_cols=64 Identities=30% Similarity=0.512 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhh
Q psy14049 23 PSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVR 86 (93)
Q Consensus 23 ~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~ 86 (93)
.++.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+...
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 4567888999999999999999999999999999999999999999999999999999999764
No 24
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.88 E-value=3.3e-22 Score=106.13 Aligned_cols=57 Identities=32% Similarity=0.478 Sum_probs=54.9
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhH
Q psy14049 27 RKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKN 83 (93)
Q Consensus 27 rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr 83 (93)
++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467899999999999999999999999999999999999999999999999999987
No 25
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.88 E-value=5.3e-22 Score=108.52 Aligned_cols=63 Identities=27% Similarity=0.429 Sum_probs=59.2
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhcc
Q psy14049 26 KRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMM 88 (93)
Q Consensus 26 ~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~ 88 (93)
+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++++.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 467889999999999999999999999999999999999999999999999999999976544
No 26
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.87 E-value=4.3e-22 Score=110.59 Aligned_cols=66 Identities=29% Similarity=0.488 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhc
Q psy14049 22 EPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRM 87 (93)
Q Consensus 22 ~~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~ 87 (93)
..+++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++++....
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhh
Confidence 345678889999999999999999999999999999999999999999999999999999986654
No 27
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.87 E-value=2.9e-22 Score=109.57 Aligned_cols=63 Identities=24% Similarity=0.385 Sum_probs=59.1
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhcc
Q psy14049 26 KRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMM 88 (93)
Q Consensus 26 ~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~ 88 (93)
+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||+|+++++.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcccc
Confidence 467789999999999999999999999999999999999999999999999999999976544
No 28
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.8e-22 Score=112.75 Aligned_cols=67 Identities=21% Similarity=0.355 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhC----CCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhcc
Q psy14049 22 EPSKKRKRRTSFTPQALELLNAHFERN----THPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMM 88 (93)
Q Consensus 22 ~~~k~rr~r~~~t~~q~~~L~~~f~~~----~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~ 88 (93)
..++.++.|+.|+.+|+..|+..|..+ +||+..++..||..+||++.+|++||||+|+++++.....
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~~~ 74 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIEV 74 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccCCC
Confidence 345678889999999999999999999 9999999999999999999999999999999999865543
No 29
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.87 E-value=5.2e-22 Score=106.09 Aligned_cols=58 Identities=33% Similarity=0.477 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHh
Q psy14049 27 RKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84 (93)
Q Consensus 27 rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~ 84 (93)
++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++++.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5678999999999999999999999999999999999999999999999999999884
No 30
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.87 E-value=2.5e-22 Score=109.78 Aligned_cols=64 Identities=30% Similarity=0.533 Sum_probs=59.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhcc
Q psy14049 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMM 88 (93)
Q Consensus 25 k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~ 88 (93)
+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++++.....
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 4677899999999999999999999999999999999999999999999999999999977654
No 31
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.87 E-value=6.3e-22 Score=111.58 Aligned_cols=62 Identities=27% Similarity=0.459 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhh
Q psy14049 24 SKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTV 85 (93)
Q Consensus 24 ~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~ 85 (93)
.+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 45678899999999999999999999999999999999999999999999999999999864
No 32
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.87 E-value=2.8e-22 Score=112.77 Aligned_cols=61 Identities=20% Similarity=0.400 Sum_probs=56.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhH
Q psy14049 22 EPSKKRKRRTSFTPQALELLNAHFER-----NTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKN 83 (93)
Q Consensus 22 ~~~k~rr~r~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr 83 (93)
...++++.|+.|+.+|+..|+ .|.. ++||+..++.+||..+||++.+|+|||||+|+++++
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 345678889999999999999 7998 999999999999999999999999999999999875
No 33
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.87 E-value=1.8e-21 Score=107.67 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhc
Q psy14049 23 PSKKRKRRTSFTPQALELLNAHFER---NTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRM 87 (93)
Q Consensus 23 ~~k~rr~r~~~t~~q~~~L~~~f~~---~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~ 87 (93)
+++.++.|+.|+..|+..|+.+|.. ++||+..++..||..+||++.+|++||+|+|+++++....
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 4567788999999999999999976 9999999999999999999999999999999999987654
No 34
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=104.10 Aligned_cols=57 Identities=30% Similarity=0.443 Sum_probs=54.4
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhh
Q psy14049 26 KRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82 (93)
Q Consensus 26 ~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~k 82 (93)
+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||+|+++|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467789999999999999999999999999999999999999999999999999975
No 35
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.87 E-value=5e-22 Score=106.42 Aligned_cols=59 Identities=32% Similarity=0.508 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhh
Q psy14049 24 SKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82 (93)
Q Consensus 24 ~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~k 82 (93)
++.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45678899999999999999999999999999999999999999999999999999875
No 36
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.87 E-value=6.5e-22 Score=105.73 Aligned_cols=58 Identities=28% Similarity=0.476 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhh
Q psy14049 29 RRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVR 86 (93)
Q Consensus 29 ~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~ 86 (93)
.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999998653
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=107.03 Aligned_cols=61 Identities=38% Similarity=0.599 Sum_probs=57.7
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhc
Q psy14049 27 RKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRM 87 (93)
Q Consensus 27 rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~ 87 (93)
++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++++....
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 5778999999999999999999999999999999999999999999999999999986554
No 38
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.86 E-value=9.4e-22 Score=112.39 Aligned_cols=63 Identities=27% Similarity=0.403 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhh
Q psy14049 23 PSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTV 85 (93)
Q Consensus 23 ~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~ 85 (93)
..+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+..
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 445788899999999999999999999999999999999999999999999999999999864
No 39
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.86 E-value=2.5e-21 Score=107.12 Aligned_cols=63 Identities=22% Similarity=0.412 Sum_probs=58.1
Q ss_pred CCCCCCCCHHHHHHHHHHhhh-CCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhccc
Q psy14049 27 RKRRTSFTPQALELLNAHFER-NTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMMS 89 (93)
Q Consensus 27 rr~r~~~t~~q~~~L~~~f~~-~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~~ 89 (93)
.+.|+.|+..|+..|+..|.. ++||+..++..||..+||++.+|++||+|||+++|+......
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~~~ 66 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPS 66 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccCCC
Confidence 456899999999999999995 999999999999999999999999999999999999876443
No 40
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.86 E-value=2.1e-21 Score=107.15 Aligned_cols=63 Identities=22% Similarity=0.445 Sum_probs=57.9
Q ss_pred CCCCCCCCHHHHHHHHHHhhh-CCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhccc
Q psy14049 27 RKRRTSFTPQALELLNAHFER-NTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMMS 89 (93)
Q Consensus 27 rr~r~~~t~~q~~~L~~~f~~-~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~~ 89 (93)
.+.|+.|+..|+..|+..|.. ++||+..++..||..+||++.+|++||+|||+++|+......
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~~~ 65 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPS 65 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccCCC
Confidence 356789999999999999996 999999999999999999999999999999999999775543
No 41
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=2.6e-21 Score=112.00 Aligned_cols=67 Identities=19% Similarity=0.386 Sum_probs=62.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhC---------------CChHHHHHHHHHHHHHhhHhhh
Q psy14049 22 EPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLG---------------YEREVIRIWFCNKRQALKNTVR 86 (93)
Q Consensus 22 ~~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~---------------l~~~~v~~WFqnrR~k~kr~~~ 86 (93)
...+.++.|+.|+..|+..|+..|..++||+..++..||..++ |++.+|++||||||+++++...
T Consensus 3 ~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 3456788999999999999999999999999999999999999 9999999999999999999876
Q ss_pred cc
Q psy14049 87 MM 88 (93)
Q Consensus 87 ~~ 88 (93)
..
T Consensus 83 ~~ 84 (95)
T 2cuf_A 83 IA 84 (95)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 42
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.9e-21 Score=107.44 Aligned_cols=62 Identities=23% Similarity=0.412 Sum_probs=56.7
Q ss_pred CCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhccc
Q psy14049 28 KRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMMS 89 (93)
Q Consensus 28 r~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~~ 89 (93)
+.|..||.+|+..|+..|..++||+..++..||..+||++.+|++||+|||+++++......
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~~ 70 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETKKS 70 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCSSC
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhccc
Confidence 34567999999999999999999999999999999999999999999999999999765443
No 43
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=1.9e-21 Score=112.90 Aligned_cols=65 Identities=28% Similarity=0.366 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhc
Q psy14049 23 PSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRM 87 (93)
Q Consensus 23 ~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~ 87 (93)
..+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+....
T Consensus 31 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 31 LGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 34577889999999999999999999999999999999999999999999999999999997654
No 44
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=102.53 Aligned_cols=54 Identities=26% Similarity=0.420 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHh
Q psy14049 31 TSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~ 84 (93)
|.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999985
No 45
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.86 E-value=6.1e-21 Score=108.00 Aligned_cols=68 Identities=19% Similarity=0.330 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhcccC
Q psy14049 23 PSKKRKRRTSFTPQALELLNAHFER---NTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMMSK 90 (93)
Q Consensus 23 ~~k~rr~r~~~t~~q~~~L~~~f~~---~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~~~ 90 (93)
..+.++.|+.|+..++..|+.+|.. ++||+..++..||..+||+..+|++||+|+|+++++.......
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~~~ 74 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRR 74 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCCCC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHhcc
Confidence 4457778899999999999999977 6999999999999999999999999999999999987665543
No 46
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=2.3e-21 Score=107.72 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhc
Q psy14049 30 RTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRM 87 (93)
Q Consensus 30 r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~ 87 (93)
++.||.+|+..|+..|..++||+..++.+||..+||++.+|++||+|+|+++|+....
T Consensus 7 r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 7 GKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999999999999986543
No 47
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.86 E-value=3.5e-21 Score=106.72 Aligned_cols=63 Identities=24% Similarity=0.373 Sum_probs=58.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhc
Q psy14049 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRM 87 (93)
Q Consensus 25 k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~ 87 (93)
..++.|+.|+.+|+..|+..|..++||+..++..||..+||++.+|++||||+|+++|+....
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcC
Confidence 356778999999999999999999999999999999999999999999999999999986554
No 48
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=112.88 Aligned_cols=63 Identities=33% Similarity=0.453 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhh
Q psy14049 23 PSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTV 85 (93)
Q Consensus 23 ~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~ 85 (93)
....++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+..
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 445667889999999999999999999999999999999999999999999999999999864
No 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.5e-21 Score=107.87 Aligned_cols=63 Identities=22% Similarity=0.383 Sum_probs=58.0
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhcc
Q psy14049 26 KRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMM 88 (93)
Q Consensus 26 ~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~ 88 (93)
+...|+.|+.+|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+.....
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~ 70 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSR 70 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSS
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccC
Confidence 455689999999999999999999999999999999999999999999999999999866543
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.85 E-value=5.8e-21 Score=105.61 Aligned_cols=62 Identities=34% Similarity=0.513 Sum_probs=57.9
Q ss_pred CCCCCCCCHHHHHHHHHHh---hhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhcc
Q psy14049 27 RKRRTSFTPQALELLNAHF---ERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMM 88 (93)
Q Consensus 27 rr~r~~~t~~q~~~L~~~f---~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~ 88 (93)
++.|+.|+..|+..|+.+| ..++||+..++..||..+||++.+|++||+|+|+++++.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 5778999999999999999 8999999999999999999999999999999999999866543
No 51
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.84 E-value=1.2e-20 Score=101.96 Aligned_cols=60 Identities=27% Similarity=0.371 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhh-CCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q psy14049 22 EPSKKRKRRTSFTPQALELLNAHFER-NTHPSGTEITTLAHQLGYEREVIRIWFCNKRQAL 81 (93)
Q Consensus 22 ~~~k~rr~r~~~t~~q~~~L~~~f~~-~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~ 81 (93)
..+.++|.||.|+.+|+..|+..|+. ++||+...++.||.++||++++|++||||+|.-.
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 34568899999999999999999999 9999999999999999999999999999999754
No 52
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.84 E-value=4e-21 Score=103.80 Aligned_cols=58 Identities=31% Similarity=0.392 Sum_probs=55.3
Q ss_pred CCCCCCCCCHHHHHHHHHHh---hhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhH
Q psy14049 26 KRKRRTSFTPQALELLNAHF---ERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKN 83 (93)
Q Consensus 26 ~rr~r~~~t~~q~~~L~~~f---~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr 83 (93)
.++.|+.|+..|+..|+.+| ..++||+..++..||..+||++.+|++||+|+|+++++
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 56778999999999999999 89999999999999999999999999999999999876
No 53
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.84 E-value=9.3e-21 Score=117.71 Aligned_cols=69 Identities=68% Similarity=1.111 Sum_probs=62.6
Q ss_pred CccccCCCCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhH
Q psy14049 15 LTEFIGMEPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKN 83 (93)
Q Consensus 15 ~~~~~~~~~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr 83 (93)
..+..+..+.++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+
T Consensus 82 ~~~~~~~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 82 LMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp HHHHHCSSCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred ccccCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 334445556678889999999999999999999999999999999999999999999999999999986
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.83 E-value=2.3e-20 Score=106.30 Aligned_cols=62 Identities=34% Similarity=0.513 Sum_probs=57.3
Q ss_pred CCCCCCCCHHHHHHHHHHh---hhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhcc
Q psy14049 27 RKRRTSFTPQALELLNAHF---ERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMM 88 (93)
Q Consensus 27 rr~r~~~t~~q~~~L~~~f---~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~ 88 (93)
++.|+.|+..|+..|+.+| ..++||+..++..||..+||++.+|++||+|+|+++++.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 5678999999999999999 8999999999999999999999999999999999999876543
No 55
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.83 E-value=1.9e-20 Score=99.96 Aligned_cols=55 Identities=22% Similarity=0.397 Sum_probs=52.9
Q ss_pred CCCCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHh
Q psy14049 30 RTSFTPQALELLNAHFER---NTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84 (93)
Q Consensus 30 r~~~t~~q~~~L~~~f~~---~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~ 84 (93)
++.|+.+|+..|+..|.. ++||+..++..||..+||++.+|++||+|+|+++|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 578999999999999999 9999999999999999999999999999999999874
No 56
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.83 E-value=1.4e-20 Score=107.31 Aligned_cols=59 Identities=25% Similarity=0.411 Sum_probs=55.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhh
Q psy14049 24 SKKRKRRTSFTPQALELLNAHFER---NTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82 (93)
Q Consensus 24 ~k~rr~r~~~t~~q~~~L~~~f~~---~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~k 82 (93)
.++++.|+.|+..|+..|+.+|.. ++||+..++..||..+||++.+|++||+|+|+++|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 456667899999999999999999 99999999999999999999999999999999987
No 57
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=7.7e-20 Score=104.67 Aligned_cols=57 Identities=19% Similarity=0.395 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhcc
Q psy14049 32 SFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMM 88 (93)
Q Consensus 32 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~ 88 (93)
.||.+|+..|+..|..++||+..++..||..+||++.+|++||||||+|+++.....
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhh
Confidence 489999999999999999999999999999999999999999999999999866554
No 58
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=6e-20 Score=106.97 Aligned_cols=65 Identities=18% Similarity=0.370 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHh---------------------CCChHHHHHHHHHHHHHh
Q psy14049 23 PSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQL---------------------GYEREVIRIWFCNKRQAL 81 (93)
Q Consensus 23 ~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~---------------------~l~~~~v~~WFqnrR~k~ 81 (93)
.++.++.|+.|+..|+..|+..|..++||+..++.+||..+ ++++.+|++||||||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 44678889999999999999999999999999999999999 799999999999999999
Q ss_pred hHhhhc
Q psy14049 82 KNTVRM 87 (93)
Q Consensus 82 kr~~~~ 87 (93)
++....
T Consensus 83 kr~~~~ 88 (102)
T 2da6_A 83 AFRQKL 88 (102)
T ss_dssp HHHHHH
T ss_pred HHhhHh
Confidence 987543
No 59
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=5.7e-20 Score=105.06 Aligned_cols=55 Identities=24% Similarity=0.348 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhh
Q psy14049 32 SFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVR 86 (93)
Q Consensus 32 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~ 86 (93)
.||.+|+..|+..|..++||+..++.+||..+||++.+|++||||||+++++...
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999988543
No 60
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.82 E-value=1.4e-20 Score=118.35 Aligned_cols=66 Identities=42% Similarity=0.683 Sum_probs=52.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhcc
Q psy14049 23 PSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMM 88 (93)
Q Consensus 23 ~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~ 88 (93)
..++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+.....
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 161 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAA 161 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC--
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCCC
Confidence 456788899999999999999999999999999999999999999999999999999999976544
No 61
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.82 E-value=2.3e-20 Score=116.92 Aligned_cols=61 Identities=43% Similarity=0.695 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHh
Q psy14049 24 SKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84 (93)
Q Consensus 24 ~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~ 84 (93)
.++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4678889999999999999999999999999999999999999999999999999999984
No 62
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.82 E-value=3.8e-20 Score=99.86 Aligned_cols=53 Identities=25% Similarity=0.460 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhh
Q psy14049 34 TPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVR 86 (93)
Q Consensus 34 t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~ 86 (93)
+.+|+..|+..|..++||+..++.+||..+||+..+|++||+|+|+++|+..-
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~~ 64 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGIV 64 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccCc
Confidence 68999999999999999999999999999999999999999999999998653
No 63
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.82 E-value=3.4e-20 Score=114.65 Aligned_cols=62 Identities=44% Similarity=0.794 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHh
Q psy14049 23 PSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84 (93)
Q Consensus 23 ~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~ 84 (93)
..++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 44677889999999999999999999999999999999999999999999999999999974
No 64
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.82 E-value=5e-20 Score=100.89 Aligned_cols=59 Identities=22% Similarity=0.318 Sum_probs=54.6
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhcc
Q psy14049 30 RTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMM 88 (93)
Q Consensus 30 r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~ 88 (93)
-...+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+.....
T Consensus 8 ~~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~~ 66 (69)
T 2l9r_A 8 HSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSS 66 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSSC
T ss_pred CCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhhh
Confidence 45789999999999999999999999999999999999999999999999999866443
No 65
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.81 E-value=8.5e-20 Score=103.25 Aligned_cols=59 Identities=20% Similarity=0.341 Sum_probs=54.2
Q ss_pred CCCCCCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhh
Q psy14049 28 KRRTSFTPQALELLNAHFER---NTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVR 86 (93)
Q Consensus 28 r~r~~~t~~q~~~L~~~f~~---~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~ 86 (93)
+.+++|+..|+..|+.+|.. ++||+..++..||..+||++.+|++||+|+|+++++...
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 34566999999999999999 999999999999999999999999999999999998643
No 66
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.81 E-value=2.9e-20 Score=102.64 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=53.8
Q ss_pred CCCCCCCCHHHHHHHHHHh-hhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhh
Q psy14049 27 RKRRTSFTPQALELLNAHF-ERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTV 85 (93)
Q Consensus 27 rr~r~~~t~~q~~~L~~~f-~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~ 85 (93)
.+.+.+++.+|+..|+..| ..++||+..++..||..+||++.+|++||||||+++|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 3445667888999999999 9999999999999999999999999999999999999854
No 67
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.80 E-value=7.2e-20 Score=106.56 Aligned_cols=64 Identities=28% Similarity=0.486 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHH------------------hC---CChHHHHHHHHHHHHHh
Q psy14049 23 PSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQ------------------LG---YEREVIRIWFCNKRQAL 81 (93)
Q Consensus 23 ~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~------------------~~---l~~~~v~~WFqnrR~k~ 81 (93)
.++.++.|+.|+..|+..|+..|..++||+..++.+||.. +| |++.+|++||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 3467888999999999999999999999999999999999 88 99999999999999998
Q ss_pred hHhhh
Q psy14049 82 KNTVR 86 (93)
Q Consensus 82 kr~~~ 86 (93)
++...
T Consensus 86 k~k~~ 90 (99)
T 1lfb_A 86 AFRHK 90 (99)
T ss_dssp SCCC-
T ss_pred HHhch
Confidence 77543
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.6e-19 Score=96.74 Aligned_cols=53 Identities=23% Similarity=0.415 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhH
Q psy14049 31 TSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKN 83 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr 83 (93)
..++..|+..|+..|..++||+..++..||..+||++.+|++||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 34578999999999999999999999999999999999999999999998776
No 69
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.79 E-value=2.3e-19 Score=111.88 Aligned_cols=61 Identities=36% Similarity=0.642 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHh
Q psy14049 24 SKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84 (93)
Q Consensus 24 ~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~ 84 (93)
.++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4567789999999999999999999999999999999999999999999999999999974
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.78 E-value=3.3e-19 Score=96.07 Aligned_cols=51 Identities=25% Similarity=0.467 Sum_probs=46.8
Q ss_pred HHHHHHHHHHh-hhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhh
Q psy14049 35 PQALELLNAHF-ERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTV 85 (93)
Q Consensus 35 ~~q~~~L~~~f-~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~ 85 (93)
..++..||..| ..++||+..++..||..+||+++||++||||||+++|+..
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCC
Confidence 34799999999 6799999999999999999999999999999999998743
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.78 E-value=3.1e-19 Score=112.02 Aligned_cols=65 Identities=28% Similarity=0.333 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhc
Q psy14049 23 PSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRM 87 (93)
Q Consensus 23 ~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~ 87 (93)
..+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+++....
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC---
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCC
Confidence 44678889999999999999999999999999999999999999999999999999999886543
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=8.5e-19 Score=95.50 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHHHhh---hCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhccc
Q psy14049 31 TSFTPQALELLNAHFE---RNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMMS 89 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~---~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~~ 89 (93)
..|+.+++..|+.+|. .++||+..++..||..+||+..+|++||+|+|+++++......
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 4799999999999999 9999999999999999999999999999999999998665443
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.69 E-value=1.4e-17 Score=106.94 Aligned_cols=61 Identities=26% Similarity=0.444 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhC---------------------CChHHHHHHHHHHHHHh
Q psy14049 23 PSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLG---------------------YEREVIRIWFCNKRQAL 81 (93)
Q Consensus 23 ~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~---------------------l~~~~v~~WFqnrR~k~ 81 (93)
.++.++.|+.|+..|+..|+..|..++||+..++..||..++ |++.+|++||+|||++.
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 356788999999999999999999999999999999999999 99999999999999987
Q ss_pred hH
Q psy14049 82 KN 83 (93)
Q Consensus 82 kr 83 (93)
+.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 64
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.66 E-value=3.1e-16 Score=89.25 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhc
Q psy14049 31 TSFTPQALELLNAHFER---NTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRM 87 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~~---~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~ 87 (93)
.-|+.+++..|+.+|.. ++||+..++..||..+||+..||++||+|+|.|.++....
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHH
Confidence 45889999999999976 9999999999999999999999999999999999986543
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8.2e-16 Score=83.45 Aligned_cols=46 Identities=20% Similarity=0.499 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 35 PQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 35 ~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
.+|+..|+.+|..|++|+..++..||..+||+.++|++||||+|+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999974
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.64 E-value=4.3e-16 Score=101.41 Aligned_cols=60 Identities=23% Similarity=0.457 Sum_probs=53.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhC---------------------CChHHHHHHHHHHHHH
Q psy14049 22 EPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLG---------------------YEREVIRIWFCNKRQA 80 (93)
Q Consensus 22 ~~~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~---------------------l~~~~v~~WFqnrR~k 80 (93)
..++.+|.|+.|++.|+..|+..|..++||+..++.+||..+| |++.+|++||+|||+.
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 3456788999999999999999999999999999999999988 8999999999999986
Q ss_pred h
Q psy14049 81 L 81 (93)
Q Consensus 81 ~ 81 (93)
.
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 4
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.52 E-value=1e-14 Score=101.03 Aligned_cols=55 Identities=29% Similarity=0.477 Sum_probs=51.6
Q ss_pred CCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhh
Q psy14049 28 KRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82 (93)
Q Consensus 28 r~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~k 82 (93)
+.++.++..++..|+..|..++||+..++.+||..+||+++||++||||||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3467899999999999999999999999999999999999999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.87 E-value=5.5e-11 Score=57.05 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhHhhhccc
Q psy14049 68 EVIRIWFCNKRQALKNTVRMMS 89 (93)
Q Consensus 68 ~~v~~WFqnrR~k~kr~~~~~~ 89 (93)
+||+|||||||+|+|+......
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 4799999999999999877644
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.12 E-value=0.0011 Score=35.54 Aligned_cols=41 Identities=15% Similarity=0.305 Sum_probs=37.5
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHH
Q psy14049 37 ALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNK 77 (93)
Q Consensus 37 q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnr 77 (93)
..+.|..+|.....+.......|+.+.+|+..+|+-||-.+
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999643
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=92.60 E-value=0.27 Score=24.67 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHH
Q psy14049 30 RTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 30 r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFq 75 (93)
+..|+.+........+.. ..........+|..+|++...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 456888877666444433 232122256889999999999999975
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=91.36 E-value=1.2 Score=25.50 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=37.4
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 29 RRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 29 ~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
.|..+|.++...+-..+..++.... ..+|..+|++...|..|..++..-
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 3568999998777777655555543 357899999999999999877653
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=88.19 E-value=1.9 Score=23.18 Aligned_cols=45 Identities=18% Similarity=0.312 Sum_probs=31.7
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHH
Q psy14049 27 RKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCN 76 (93)
Q Consensus 27 rr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqn 76 (93)
++.+..|+.++.......+. ... ....+|..+|++...|..|...
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 34566888888655555553 222 2557899999999999999853
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=87.61 E-value=2.2 Score=23.07 Aligned_cols=49 Identities=14% Similarity=0.268 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhh
Q psy14049 33 FTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVR 86 (93)
Q Consensus 33 ~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~ 86 (93)
++..+..+|...|... ....++|..+|++...|+.+...-+.+.++...
T Consensus 38 L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666544222 135678999999999999999988888776544
No 84
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=84.26 E-value=3.5 Score=22.36 Aligned_cols=42 Identities=17% Similarity=0.382 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHhhhC-CCCCHHHHHHHHHHhCCChHHHHHHHHH
Q psy14049 31 TSFTPQALELLNAHFERN-THPSGTEITTLAHQLGYEREVIRIWFCN 76 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~~~-~~p~~~~~~~la~~~~l~~~~v~~WFqn 76 (93)
..|+.++....-..+... .. ....+|..+|++...|..|...
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHH
Confidence 468888766555444322 22 3567899999999999999854
No 85
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=82.18 E-value=3.4 Score=20.65 Aligned_cols=48 Identities=21% Similarity=0.091 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHh
Q psy14049 32 SFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84 (93)
Q Consensus 32 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~ 84 (93)
.+++.+...+...|... ....++|..+|++...|..+...-+.+.++.
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 46778888887765322 2356789999999999999998777766553
No 86
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=80.66 E-value=5.5 Score=22.12 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q psy14049 30 RTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQAL 81 (93)
Q Consensus 30 r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~ 81 (93)
...++..+..+|...+..- ...++|..+|++...|+.+..+-+.+.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4568999999997765322 247889999999999999987655554
No 87
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=78.63 E-value=7 Score=22.18 Aligned_cols=48 Identities=10% Similarity=0.241 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHh
Q psy14049 32 SFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84 (93)
Q Consensus 32 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~ 84 (93)
.+++.+...+...|... ....++|..+|++...|..+...-+.+.+..
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 46777777777764332 1356789999999999999998888776654
No 88
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=78.13 E-value=5.8 Score=20.93 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhH
Q psy14049 31 TSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKN 83 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr 83 (93)
..++..+..+|...+. . ....++|..+|++...|+.+..+-+.+.+.
T Consensus 20 ~~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 20 NQLTPRERDILKLIAQ--G----LPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGSCHHHHHHHHHHTT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 4688999999887532 2 235678999999999999998876666543
No 89
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=77.85 E-value=3.7 Score=18.58 Aligned_cols=39 Identities=10% Similarity=0.221 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHH
Q psy14049 32 SFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 32 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFq 75 (93)
.++.++...+...+.. .+ ...++|..+|++...|..|..
T Consensus 5 ~l~~~~~~~i~~~~~~-g~----s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHh
Confidence 4667666555444432 22 256789999999999999985
No 90
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=77.83 E-value=7.8 Score=22.26 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=26.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhhHhhh
Q psy14049 55 EITTLAHQLGYEREVIRIWFCNKRQALKNTVR 86 (93)
Q Consensus 55 ~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~ 86 (93)
...++|..+|++...|+.+...-+.+.++...
T Consensus 126 s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 126 SYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999877777776543
No 91
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=76.79 E-value=7 Score=21.21 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhH
Q psy14049 31 TSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKN 83 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr 83 (93)
..++..+..+|...+..- ...++|..+|++...|+.+...-+.+.+.
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 358888888888764322 24678999999999999998876666554
No 92
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=76.76 E-value=6.2 Score=21.12 Aligned_cols=47 Identities=13% Similarity=0.074 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhH
Q psy14049 31 TSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKN 83 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr 83 (93)
..++..+..+|...+. .+. ..++|..+|++...|+.+...-+.+.+.
T Consensus 28 ~~Lt~~e~~vl~l~~~--g~s----~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK--GYS----NQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHHHHT--TCC----TTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHc--CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3578888888877543 222 3468999999999999999876666543
No 93
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=76.17 E-value=6.1 Score=20.22 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhH
Q psy14049 33 FTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKN 83 (93)
Q Consensus 33 ~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr 83 (93)
+++.+...+...+ ..+ ...++|..+|++...|..+...-+.+.+.
T Consensus 17 L~~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVV--AGL----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHT--TTC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 5666777776643 222 24578999999999999998876666553
No 94
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=76.14 E-value=5.8 Score=19.93 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHh
Q psy14049 32 SFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84 (93)
Q Consensus 32 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~ 84 (93)
.+++.+..++...|..+.+-. ....++|..+|++...|+.+...-+.+.+..
T Consensus 5 ~L~~~er~il~l~~~l~~~~g-~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTD-YTLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSC-CCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred cCCHHHHHHHHHHHccCCCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 467888888888873221111 2356789999999999999998777766653
No 95
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=75.91 E-value=7.8 Score=21.28 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHhhhC--CCCCH-HHHHHHHHHhCCChHHHHHHHHH
Q psy14049 31 TSFTPQALELLNAHFERN--THPSG-TEITTLAHQLGYEREVIRIWFCN 76 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~~~--~~p~~-~~~~~la~~~~l~~~~v~~WFqn 76 (93)
..|+.++....-..+... .+++. .....+|..+|+++..|..|...
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 468887765444433221 13332 35678999999999999999864
No 96
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=75.44 E-value=12 Score=23.03 Aligned_cols=48 Identities=8% Similarity=0.067 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhh
Q psy14049 33 FTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTV 85 (93)
Q Consensus 33 ~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~ 85 (93)
+++.+..+|...|... ....++|..+|++...|+.+...-+.+.++..
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554221 23567899999999999999988887777643
No 97
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=74.75 E-value=6.7 Score=19.99 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhh
Q psy14049 32 SFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82 (93)
Q Consensus 32 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~k 82 (93)
.+++.+..++...|....- ......++|..+|++...|+.+...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4678888888888742100 0123467899999999999999987777666
No 98
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=74.64 E-value=5.4 Score=19.39 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=21.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHhh
Q psy14049 57 TTLAHQLGYEREVIRIWFCNKRQALK 82 (93)
Q Consensus 57 ~~la~~~~l~~~~v~~WFqnrR~k~k 82 (93)
.++|..+|++...|..+..+-+.+.+
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 57899999999999999887666544
No 99
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=74.41 E-value=11 Score=22.40 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=26.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHhhHhhh
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKRQALKNTVR 86 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~ 86 (93)
..++|..+|++...|+.+...-+.+.++...
T Consensus 159 ~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 189 (194)
T 1or7_A 159 YEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 189 (194)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999988888776543
No 100
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=74.21 E-value=7.9 Score=20.56 Aligned_cols=51 Identities=14% Similarity=0.219 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhH
Q psy14049 32 SFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKN 83 (93)
Q Consensus 32 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr 83 (93)
.+++.+..++...|....- ......++|..+|++...|+.+...-+.+.+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4677788888887742100 11235678999999999999999877766654
No 101
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=74.11 E-value=2.9 Score=24.26 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=23.0
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhcc
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMM 88 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~ 88 (93)
+..++-.|+.|+||... |-..+ =.|||.+|+..+.++
T Consensus 15 vRiIkiLyQSNPyP~pe---------GTRqa-----RRNRRRRWR~RQrQI 51 (115)
T 2x7l_M 15 VRLIKFLYQSNPPPNPE---------GTRQA-----RRNRRRRWRERQRQI 51 (115)
T ss_dssp HHHHHHHHHSSCCCCCC---------CCTTT-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCC---------Cchhh-----hHhHHHHHHHHHHHH
Confidence 34455558899999753 11111 258888888776654
No 102
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=73.97 E-value=1.5 Score=20.40 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHH
Q psy14049 33 FTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCN 76 (93)
Q Consensus 33 ~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqn 76 (93)
++.++...+...+... . ...++|..+|++...|..|+..
T Consensus 6 ~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444444444322 2 3567899999999999999853
No 103
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=73.55 E-value=4.3 Score=21.36 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNK 77 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnr 77 (93)
...||..+|++..-|..|..+.
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~ 34 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAG 34 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHhCC
Confidence 6789999999999999998653
No 104
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=73.43 E-value=1.8 Score=26.33 Aligned_cols=42 Identities=5% Similarity=0.048 Sum_probs=30.7
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q psy14049 39 ELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQAL 81 (93)
Q Consensus 39 ~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~ 81 (93)
......|...+|-.. ....||...|++...+-.+|.++-.-.
T Consensus 35 ~aa~~lf~~~G~~~~-tv~~IA~~agvs~~t~Y~~F~sK~~Ll 76 (215)
T 2qko_A 35 NAAIEVLAREGARGL-TFRAVDVEANVPKGTASNYFPSRDDLF 76 (215)
T ss_dssp HHHHHHHHHTCTTTC-CHHHHHHHSSSTTTCHHHHCSCHHHHH
T ss_pred HHHHHHHHHhChhhc-cHHHHHHHcCCCcchHHHhCCCHHHHH
Confidence 334445777777543 366789999999999999998875443
No 105
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=72.88 E-value=9 Score=22.51 Aligned_cols=52 Identities=10% Similarity=0.185 Sum_probs=39.3
Q ss_pred CCCCCCCCHHHHHHHHHHh-hhCCCCCHHHHHHHH-HHh--CCChHHHHHHHHHHH
Q psy14049 27 RKRRTSFTPQALELLNAHF-ERNTHPSGTEITTLA-HQL--GYEREVIRIWFCNKR 78 (93)
Q Consensus 27 rr~r~~~t~~q~~~L~~~f-~~~~~p~~~~~~~la-~~~--~l~~~~v~~WFqnrR 78 (93)
++.|..+|.+|...+-..+ ..++-.+..+...+| ..+ +++...|..|..++-
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 4567899999999999998 677777766555533 367 778888999997653
No 106
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=72.73 E-value=11 Score=21.34 Aligned_cols=49 Identities=8% Similarity=0.133 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhh
Q psy14049 32 SFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTV 85 (93)
Q Consensus 32 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~ 85 (93)
.+++.+...+...|... ....++|..+|++...|..+...-+.+.+...
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 35667777776654322 23567899999999999999988777776543
No 107
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=72.63 E-value=6.3 Score=20.75 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhCCChHHHHHHHH
Q psy14049 31 TSFTPQALELLNAHFE-----RNTHPSGTEITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~l~~~~v~~WFq 75 (93)
..++.++...|...|. .+.+.+..+...+...+|++...|..+|.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 4577788888888884 46788999999988999999999988885
No 108
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=71.87 E-value=4.1 Score=21.07 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 56799999999999999998765
No 109
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=71.31 E-value=8 Score=19.37 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhh
Q psy14049 30 RTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82 (93)
Q Consensus 30 r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~k 82 (93)
-..+++.+...|...+ ..+ ...++|..+|++...|..+...-+.+.+
T Consensus 9 ~~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 9 KPLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 3468888999888743 222 3567899999999999999986655544
No 110
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=70.54 E-value=10 Score=20.15 Aligned_cols=44 Identities=9% Similarity=0.045 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhCCChHHHHHHHH
Q psy14049 32 SFTPQALELLNAHFE-----RNTHPSGTEITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 32 ~~t~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~l~~~~v~~WFq 75 (93)
.++.++...+...|. .+.+.+..+...+...+|++...+...|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 467888888988884 35678888888888888998888877664
No 111
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=69.63 E-value=0.029 Score=34.49 Aligned_cols=30 Identities=13% Similarity=0.040 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCCH
Q psy14049 24 SKKRKRRTSFTPQALELLNAHFERNTHPSG 53 (93)
Q Consensus 24 ~k~rr~r~~~t~~q~~~L~~~f~~~~~p~~ 53 (93)
.+.++.|+.|+..|++.|+..|+.+++|+.
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 456788999999999999999999999874
No 112
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=69.23 E-value=4.1 Score=24.89 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=28.3
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 41 LNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 41 L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
-...|...+|-.. ....||...|++...|-.+|.++-.
T Consensus 44 A~~lf~~~G~~~~-t~~~IA~~AGvs~~tlY~~F~sKe~ 81 (221)
T 3g7r_A 44 ATRIFYAEGIHSV-GIDRITAEAQVTRATLYRHFSGKDD 81 (221)
T ss_dssp HHHHHHHHCSTTS-CHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHhCcccC-CHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 3344777776543 3667899999999999999988744
No 113
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=69.07 E-value=11 Score=20.18 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhCCChHHHHHHHH
Q psy14049 33 FTPQALELLNAHFE-----RNTHPSGTEITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 33 ~t~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~l~~~~v~~WFq 75 (93)
++.++...+...|. .+.+.+..+...+...+|++...+..+|.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56677888888873 45678888888888888999888887775
No 114
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=68.83 E-value=3 Score=22.21 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=22.9
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhhcc
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVRMM 88 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~~~ 88 (93)
+..++-.|+.||||++.--.. | =.|||.+|+..+.++
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQI 54 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHHH
Confidence 445556689999997541111 1 257888888766654
No 115
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=67.25 E-value=13 Score=20.09 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=34.2
Q ss_pred CCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q psy14049 28 KRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQAL 81 (93)
Q Consensus 28 r~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~ 81 (93)
.....++..+..+|...+. .+ ...++|..+|++...|+....+-..|.
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~~--G~----s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVEK--GF----TNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ----CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred ccccCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3345799999999987762 22 356789999999999998887655443
No 116
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=65.58 E-value=17 Score=21.08 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhCCCh
Q psy14049 30 RTSFTPQALELLNAHFE-----RNTHPSGTEITTLAHQLGYER 67 (93)
Q Consensus 30 r~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~l~~ 67 (93)
+..+|.+|+..|...|. .+++.+..+...+...+|..+
T Consensus 7 ~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 49 (153)
T 3i5g_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP 49 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCC
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCc
Confidence 45799999999999994 467899999999888888654
No 117
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=65.21 E-value=6.7 Score=18.68 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHH
Q psy14049 35 PQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 35 ~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFq 75 (93)
.++...+...+. ..+ ...++|..+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~-~g~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAK-MGY----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHH-TTC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 444444444443 222 355789999999999999974
No 118
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=65.05 E-value=8.4 Score=22.63 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHhhh
Q psy14049 32 SFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVR 86 (93)
Q Consensus 32 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~~~ 86 (93)
.++..+..++...| .......++|..+|++...|+.....-|.+.++...
T Consensus 93 ~Lp~~~r~vl~L~~-----~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~ 142 (157)
T 2lfw_A 93 RMTPLSRQALLLTA-----MEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTR 142 (157)
T ss_dssp TSCTTHHHHHTTTS-----SSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred hCCHHHHHHHHHHH-----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 35566666665432 222346788999999999999999888877776543
No 119
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=64.50 E-value=4.3 Score=19.71 Aligned_cols=23 Identities=30% Similarity=0.128 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999997653
No 120
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=63.82 E-value=4.6 Score=19.75 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 46789999999999999997654
No 121
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=63.75 E-value=13 Score=18.89 Aligned_cols=41 Identities=5% Similarity=0.054 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHH
Q psy14049 31 TSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR 78 (93)
..++.+.+..+......+ ..+||..+|++...|..|=.+.+
T Consensus 9 ~~~~g~~lr~~R~~~glt-------q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCCC-------HHHHHHHhCcCHHHHHHHHcCCC
Confidence 467888888887664333 56789999999999999987654
No 122
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=62.94 E-value=1.9 Score=26.70 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=27.7
Q ss_pred HHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 42 NAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 42 ~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
...|...+|-.. ....||...|++...+-.+|.++-.
T Consensus 53 ~~l~~~~G~~~~-tv~~IA~~AGvs~~t~Y~~F~sKe~ 89 (229)
T 3bni_A 53 ADLLDEVGYDAL-STRAVALRADVPIGSVYRFFGNKRQ 89 (229)
T ss_dssp HHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHhcChhhc-cHHHHHHHHCCCchhHHHHcCCHHH
Confidence 344667776543 3567899999999999999988743
No 123
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=61.73 E-value=28 Score=22.15 Aligned_cols=47 Identities=13% Similarity=0.028 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhH
Q psy14049 31 TSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKN 83 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr 83 (93)
..+++.+..++...++ .+ ...++|..+|++...|++...+-+.+.+.
T Consensus 196 ~~L~~~erevl~L~~~--G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 196 NILSEREKEILRCIRK--GL----SSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TSSCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 4688888888877642 22 35678999999999999999877777654
No 124
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=61.42 E-value=6.4 Score=19.61 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=17.4
Q ss_pred HHHHHHHhCCChHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWF 74 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WF 74 (93)
...||..+|++...|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4679999999999999997
No 125
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=60.83 E-value=5.4 Score=19.71 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|..+++
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46789999999999999997654
No 126
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=60.33 E-value=5.8 Score=19.92 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999997654
No 127
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=58.36 E-value=20 Score=19.44 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhCC--ChHHHHHHHH
Q psy14049 30 RTSFTPQALELLNAHFE-----RNTHPSGTEITTLAHQLGY--EREVIRIWFC 75 (93)
Q Consensus 30 r~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~l--~~~~v~~WFq 75 (93)
...++.++...|...|. .+.+.+..+...+...+|. +...|..+|+
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45688999999999984 4678999999998888874 6677888875
No 128
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=58.30 E-value=7.9 Score=24.43 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=33.3
Q ss_pred CCCCCHHH-HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 30 RTSFTPQA-LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 30 r~~~t~~q-~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
+...+.+. +..-...|....|-.. ....||..+|++...+-.+|.|+-.
T Consensus 26 ~~~~tr~~Il~aA~~l~~~~G~~~~-s~~~IA~~aGvs~~tlY~hF~~K~~ 75 (241)
T 2hxi_A 26 RRRWSTEQILDAAAELLLAGDAETF-SVRKLAASLGTDSSSLYRHFRNKTE 75 (241)
T ss_dssp --CCCHHHHHHHHHHHHSSSSCCCC-CHHHHHHHTTSCHHHHHHHTSSHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCcccC-CHHHHHHHhCcCHHHHHHHcCCHHH
Confidence 34455544 3445555777776543 3667899999999999999988744
No 129
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=58.28 E-value=31 Score=21.55 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhh
Q psy14049 31 TSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~k 82 (93)
..+|+.+.++|.-.+. .+ .-.++|..+|+++..|+....+-+.|..
T Consensus 174 ~~Lt~~e~~vl~~~~~--g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 174 QMLSPREMLCLVWASK--GK----TASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GSCCHHHHHHHHHHHT--TC----CHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4588888888866542 21 2467899999999999999987766644
No 130
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=58.03 E-value=6.5 Score=19.67 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999987654
No 131
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=57.95 E-value=11 Score=22.58 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhCCCh--HHHHHHH
Q psy14049 30 RTSFTPQALELLNAHFE-----RNTHPSGTEITTLAHQLGYER--EVIRIWF 74 (93)
Q Consensus 30 r~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~l~~--~~v~~WF 74 (93)
.+.+|.+|+..|...|. .+.+.+..+...+...+|+.+ ..|...|
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~ 53 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLM 53 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChhHHHHHHHH
Confidence 46789999999999984 467889999888888888654 4444333
No 132
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=57.81 E-value=11 Score=19.41 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46789999999999999998754
No 133
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=57.63 E-value=6.7 Score=19.20 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|..+++
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999987654
No 134
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=57.51 E-value=21 Score=20.24 Aligned_cols=23 Identities=4% Similarity=-0.060 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|-.+++
T Consensus 87 q~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 87 QKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp HHHHHHHHCSCTTHHHHHHHTSS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 45789999999999999988754
No 135
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=57.44 E-value=6.8 Score=19.70 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNK 77 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnr 77 (93)
...||..+|++...|..|..++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4678999999999999999765
No 136
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=56.98 E-value=7.1 Score=19.64 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 46789999999999999997653
No 137
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=56.95 E-value=6.6 Score=20.21 Aligned_cols=24 Identities=13% Similarity=0.302 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
...||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 457899999999999999976643
No 138
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=55.52 E-value=12 Score=18.93 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=18.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNK 77 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnr 77 (93)
..++|..+|++...|..|-.+.
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~G 26 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQG 26 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHCC
Confidence 3568999999999999998653
No 139
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=55.06 E-value=26 Score=19.64 Aligned_cols=41 Identities=10% Similarity=0.241 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHH
Q psy14049 31 TSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCN 76 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqn 76 (93)
..++.++...+...+.. .. ....+|..+|++...|..|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~-G~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHc
Confidence 35777777666666643 22 2467799999999999999974
No 140
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=54.93 E-value=5.5 Score=23.59 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=32.2
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
+..-...|...+| . .....||...|++...+-.+|.++-.
T Consensus 21 l~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~ 60 (194)
T 2q24_A 21 LAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREA 60 (194)
T ss_dssp HHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHH
Confidence 4445556888888 5 67889999999999999999988744
No 141
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=54.69 E-value=11 Score=20.03 Aligned_cols=23 Identities=9% Similarity=0.122 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|..+.+
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46789999999999999998754
No 142
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=54.26 E-value=5.8 Score=23.69 Aligned_cols=40 Identities=15% Similarity=0.373 Sum_probs=29.5
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 39 ELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 39 ~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
......|...+|-.. ....||...|++...+-.+|.++-.
T Consensus 38 ~aa~~l~~~~G~~~~-tv~~Ia~~agvs~~t~Y~~F~sK~~ 77 (218)
T 3dcf_A 38 KVATELFREKGYYAT-SLDDIADRIGFTKPAIYYYFKSKED 77 (218)
T ss_dssp HHHHHHHHHTCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHcCcccC-cHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 344445777777543 3667899999999999999988754
No 143
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=54.10 E-value=9.6 Score=19.84 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998765
No 144
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=53.84 E-value=8.1 Score=19.46 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999997665
No 145
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=53.67 E-value=8.7 Score=19.05 Aligned_cols=23 Identities=26% Similarity=0.172 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46789999999999999987653
No 146
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=53.28 E-value=8.5 Score=22.91 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=30.7
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 40 LLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 40 ~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
.-...|...+| . .....||...|++...+-.+|.++-.
T Consensus 21 aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~~ 58 (196)
T 2qwt_A 21 VAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQA 58 (196)
T ss_dssp HHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 34445788888 5 67888999999999999999988744
No 147
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=52.61 E-value=8.8 Score=20.43 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|..+++
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 46789999999999999997654
No 148
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=52.35 E-value=40 Score=21.00 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhh
Q psy14049 30 RTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82 (93)
Q Consensus 30 r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~k 82 (93)
...++..+.++|.-.+. . ..-.++|..+|++...|+....+-+.|..
T Consensus 171 ~~~Lt~~e~~vl~~~~~--g----~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAV--G----KTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHHHTT--T----CCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 34688888888866432 2 13567899999999999999987766643
No 149
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=51.57 E-value=16 Score=21.80 Aligned_cols=44 Identities=27% Similarity=0.284 Sum_probs=32.5
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q psy14049 37 ALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQAL 81 (93)
Q Consensus 37 q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~ 81 (93)
-+..-...|....|-.. ....||...|++...+-..|.++-.-.
T Consensus 16 Il~aA~~lF~~~Gy~~t-s~~~IA~~aGvsk~tlY~~F~sKe~L~ 59 (202)
T 2i10_A 16 ALQTAMELFWRQGYEGT-SITDLTKALGINPPSLYAAFGSKRDLF 59 (202)
T ss_dssp HHHHHHHHHHHHTTTTC-CHHHHHHHHTCCHHHHHHHHCSHHHHH
T ss_pred HHHHHHHHHHHhCcccC-CHHHHHHHhCCChHHHHHHhCCHHHHH
Confidence 34445555877777643 366789999999999999998875443
No 150
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=50.59 E-value=23 Score=19.31 Aligned_cols=41 Identities=5% Similarity=-0.050 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHH
Q psy14049 32 SFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNK 77 (93)
Q Consensus 32 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnr 77 (93)
.++.+....+...+. ..+ + ...+|..+|++...|..|+..-
T Consensus 17 ~~s~~~r~~i~~~~~-~g~-s---~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAA-DGI-R---PCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp CCCHHHHHHHHHHHH-TTC-C---HHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCC-C---HHHHHHHHCcCHHHHHHHHHHH
Confidence 577777666655554 332 2 4568999999999999999743
No 151
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=50.35 E-value=15 Score=17.94 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=18.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNK 77 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnr 77 (93)
...+|..+|++...|..|..+.
T Consensus 16 ~~~~A~~lgis~~~vs~~~~~~ 37 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVRAG 37 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4578999999999999998544
No 152
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=50.04 E-value=11 Score=19.76 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=17.2
Q ss_pred HHHHHHHhCCChHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFq 75 (93)
..++|..+|++...|+.|-.
T Consensus 8 i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWER 27 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45689999999999999965
No 153
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=49.89 E-value=16 Score=21.73 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=29.4
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 41 LNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 41 L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
-...|...+|-.. ....||...|++...|-.+|.++-.-
T Consensus 26 A~~l~~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~~L 64 (218)
T 3gzi_A 26 ARNLFIERPYAQV-SIREIASLAGTDPGLIRYYFGSKEKL 64 (218)
T ss_dssp HHHHHHTSCCSCC-CHHHHHHHHTSCTHHHHHHHSSHHHH
T ss_pred HHHHHHHCCCCcC-CHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 3444777777653 35678999999999999999887543
No 154
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=49.25 E-value=2.4 Score=26.10 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=28.6
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
+..-...|...+|-. .....||...|++...|-.+|.++-.-
T Consensus 36 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~sK~~L 77 (226)
T 2pz9_A 36 VAAAKEEFARHGIAG-ARVDRIAKQARTSKERVYAYFRSKEAL 77 (226)
T ss_dssp HHHHHHHHHHHHHHH-CCHHHHHHHTTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhCccc-CcHHHHHHHHCCChHHHHHHcCCHHHH
Confidence 334444465555432 236678999999999999999877443
No 155
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=48.59 E-value=22 Score=19.08 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHH
Q psy14049 55 EITTLAHQLGYEREVIRIWFCNK 77 (93)
Q Consensus 55 ~~~~la~~~~l~~~~v~~WFqnr 77 (93)
....||..+|+++..+...|+..
T Consensus 21 ~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 21 TLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 46678999999998888888643
No 156
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=48.42 E-value=12 Score=19.11 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46789999999999999997654
No 157
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=47.30 E-value=35 Score=18.82 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhHh
Q psy14049 32 SFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84 (93)
Q Consensus 32 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr~ 84 (93)
.+++.+..++...|..+.. ......++|..+|++...|+........+.|..
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~ 70 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 70 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 3566777777777643211 112467789999999999999987776666653
No 158
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=46.33 E-value=22 Score=20.80 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHhh-------hCCCCCHHHHHHHHHHhCCCh
Q psy14049 32 SFTPQALELLNAHFE-------RNTHPSGTEITTLAHQLGYER 67 (93)
Q Consensus 32 ~~t~~q~~~L~~~f~-------~~~~p~~~~~~~la~~~~l~~ 67 (93)
.+|.+|+..|+..|. .+.+.+..+...+...+|+.+
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~ 44 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNP 44 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCC
Confidence 578999999999874 245788888888888888653
No 159
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=46.18 E-value=13 Score=19.02 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
..+||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45789999999999999987653
No 160
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=46.10 E-value=34 Score=21.09 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHH
Q psy14049 37 ALELLNAHFERNTHPSGTEITTLAHQLGYEREVIR 71 (93)
Q Consensus 37 q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~ 71 (93)
-+..|...=....|.+......+|..++|+...|.
T Consensus 27 li~~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V~ 61 (181)
T 3i9v_2 27 IMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVM 61 (181)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHHH
Confidence 34445444344589999999999999999998874
No 161
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=46.07 E-value=17 Score=19.05 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|..+++
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45689999999999999998754
No 162
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=45.87 E-value=12 Score=18.98 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|-.+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45789999999999999987653
No 163
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=45.53 E-value=29 Score=17.45 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhC-CChHHHHHHHH
Q psy14049 32 SFTPQALELLNAHFE-----RNTHPSGTEITTLAHQLG-YEREVIRIWFC 75 (93)
Q Consensus 32 ~~t~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~-l~~~~v~~WFq 75 (93)
.+++.+...|...|. .+.+.+..+...+...+| ++...+...|.
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 467778888888873 356777777777766666 56667777664
No 164
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=45.50 E-value=9.4 Score=22.94 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=30.0
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 39 ELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 39 ~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
..-...|...+ .......||...|++...|-.+|.++-.-
T Consensus 27 ~aA~~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK~~L 66 (215)
T 2hku_A 27 TAATELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSKERL 66 (215)
T ss_dssp HHHHHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 33444466666 55567889999999999999999887543
No 165
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=45.35 E-value=44 Score=19.46 Aligned_cols=45 Identities=16% Similarity=0.005 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHhh----hCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 33 FTPQALELLNAHFE----RNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 33 ~t~~q~~~L~~~f~----~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
++..+...|...+. .+++|+.. .||..+|+++..|....++--.+
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~~---~LA~~~~~s~~~v~~~L~~L~~K 78 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTPN---QLQEGMSISVEECTNRLRMFIQK 78 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCHH---HHHTTSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHHHHHHC
Confidence 45666666655544 25677764 68999999999999998765444
No 166
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=44.96 E-value=20 Score=21.74 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=28.7
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 41 LNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 41 L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
....|...+|-.. ....||...|++...|-..|.++-.-
T Consensus 48 A~~lf~e~G~~~~-tv~~IA~~AGvs~~tlY~~F~sKe~L 86 (214)
T 2guh_A 48 AGRAFATRPYREI-TLKDIAEDAGVSAPLIIKYFGSKEQL 86 (214)
T ss_dssp HHHHHHHSCGGGC-CHHHHHHHHTSCHHHHHHHHSSHHHH
T ss_pred HHHHHHHcChhhc-CHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 3344777776533 35678999999999999999887543
No 167
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=44.24 E-value=14 Score=19.27 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|..+++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999997653
No 168
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=44.23 E-value=13 Score=21.93 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=29.7
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q psy14049 41 LNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQAL 81 (93)
Q Consensus 41 L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~ 81 (93)
....|...+|-... ...||...|++...+-.+|.++-.-.
T Consensus 21 A~~lf~e~G~~~~t-~~~IA~~agvsk~tlY~~F~sKe~L~ 60 (192)
T 2fq4_A 21 SYELLLESGFKAVT-VDKIAERAKVSKATIYKWWPNKAAVV 60 (192)
T ss_dssp HHHHHHHHCTTTCC-HHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHcCccccc-HHHHHHHcCCCHHHHHHHCCCHHHHH
Confidence 34447777775433 67789999999999999998875443
No 169
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=43.62 E-value=15 Score=19.78 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
..+||..+|++...|..|..+++
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~~ 62 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNEN 62 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56789999999999999998753
No 170
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=43.50 E-value=18 Score=18.46 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=18.2
Q ss_pred HHHHHHHhCCChHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCN 76 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqn 76 (93)
...+|..+|++..-|..|-..
T Consensus 16 q~~~A~~Lgvsq~aVS~~~~~ 36 (65)
T 2cw1_A 16 QEYAARALGLSQKLIEEVLKR 36 (65)
T ss_dssp HHHHHHHSSSCHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHh
Confidence 567899999999999999854
No 171
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=42.92 E-value=24 Score=17.87 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..++.++.
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999998765
No 172
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=42.20 E-value=6.6 Score=18.77 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=25.3
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHH
Q psy14049 40 LLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCN 76 (93)
Q Consensus 40 ~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqn 76 (93)
.|..+-...+-.+.....+.|..+||...-|..+|..
T Consensus 11 klkefvrrhqeitqetlheyaqklglnqqaieqffre 47 (52)
T 1y66_A 11 KLKEFVRRHQEITQETLHEYAQKLGLNQQAIEQFFRE 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 3444333333445566778899999999999999853
No 173
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=41.89 E-value=22 Score=17.37 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=19.3
Q ss_pred HHHHHHHhC--CChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLG--YEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~--l~~~~v~~WFqnrR 78 (93)
...||..+| ++...|..|-..++
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~~ 48 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGDR 48 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCCC
Confidence 457899999 99999999987653
No 174
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=41.77 E-value=34 Score=17.10 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhC--CChHHHHHHHH
Q psy14049 31 TSFTPQALELLNAHFE-----RNTHPSGTEITTLAHQLG--YEREVIRIWFC 75 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~--l~~~~v~~WFq 75 (93)
..++..+...|...|. .+.+.+..+...+...+| ++...+...|.
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 6 KVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp CSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4578889999999884 356778888888777777 45667777774
No 175
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=41.54 E-value=17 Score=18.53 Aligned_cols=23 Identities=26% Similarity=0.121 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|-.+++
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 45789999999999999987653
No 176
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=41.34 E-value=21 Score=19.51 Aligned_cols=23 Identities=9% Similarity=0.221 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|-.+++
T Consensus 25 q~~lA~~~gis~~~i~~~e~g~~ 47 (114)
T 3op9_A 25 NHQIAELLNVQTRTVAYYMSGET 47 (114)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998754
No 177
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=41.30 E-value=8.1 Score=22.89 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=30.9
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 39 ELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 39 ~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
..-...|...+| . .....||...|++...+-..|.++-.
T Consensus 23 ~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~~ 61 (199)
T 2rek_A 23 EAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRWG 61 (199)
T ss_dssp HHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHHH
Confidence 334445778888 5 57888999999999999999988744
No 178
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=41.21 E-value=6.8 Score=23.24 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=21.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHHhhHh
Q psy14049 58 TLAHQLGYEREVIRIWFCNKRQALKNT 84 (93)
Q Consensus 58 ~la~~~~l~~~~v~~WFqnrR~k~kr~ 84 (93)
++|..+|++...|+.+...-+.+.++.
T Consensus 156 eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 156 ELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp CSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 467778999999999998777776653
No 179
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=40.89 E-value=27 Score=17.78 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=18.5
Q ss_pred HHHHHHHhCCChHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCN 76 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqn 76 (93)
...||..+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 457899999999999999876
No 180
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=40.89 E-value=77 Score=22.56 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhCC--ChHHHHHHHH
Q psy14049 30 RTSFTPQALELLNAHFE-----RNTHPSGTEITTLAHQLGY--EREVIRIWFC 75 (93)
Q Consensus 30 r~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~l--~~~~v~~WFq 75 (93)
+..++.+|+..|+..|. .+.+.+..+...+...+|+ +...|..-|.
T Consensus 293 ~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf~ 345 (440)
T 3u0k_A 293 RDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMIN 345 (440)
T ss_dssp CBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 56899999999999994 5678899999888888875 4566665553
No 181
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=39.95 E-value=39 Score=17.36 Aligned_cols=57 Identities=21% Similarity=0.128 Sum_probs=37.2
Q ss_pred CCCCCCCCHHHHHHHHHH-hhhCC-CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhH
Q psy14049 27 RKRRTSFTPQALELLNAH-FERNT-HPSGTEITTLAHQLGYEREVIRIWFCNKRQALKN 83 (93)
Q Consensus 27 rr~r~~~t~~q~~~L~~~-f~~~~-~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~kr 83 (93)
++.|-++|++.-...... .+... .-.+..+.++...-||+..+|+.=.|.-|...+|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 556778888765544444 33331 2234555555556689999999999988877665
No 182
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=39.90 E-value=26 Score=19.35 Aligned_cols=20 Identities=10% Similarity=0.110 Sum_probs=17.0
Q ss_pred HHHHHHHhCCChHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFq 75 (93)
..++|..+|++...++.|-.
T Consensus 5 i~e~A~~~gvs~~tLR~ye~ 24 (109)
T 1r8d_A 5 VKQVAEISGVSIRTLHHYDN 24 (109)
T ss_dssp HHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 35689999999999999964
No 183
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=39.20 E-value=28 Score=19.24 Aligned_cols=21 Identities=10% Similarity=-0.004 Sum_probs=17.5
Q ss_pred HHHHHHHhCCChHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCN 76 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqn 76 (93)
..++|..+|++...++.|=..
T Consensus 4 i~e~A~~~gvs~~tLR~ye~~ 24 (108)
T 2vz4_A 4 VGQVAGFAGVTVRTLHHYDDI 24 (108)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 356899999999999999653
No 184
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=38.69 E-value=29 Score=18.51 Aligned_cols=23 Identities=9% Similarity=0.156 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|-.+++
T Consensus 46 q~elA~~lgvs~~~is~~E~G~~ 68 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGRS 68 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
Confidence 46789999999999999987653
No 185
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=38.46 E-value=14 Score=22.16 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=29.6
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 41 LNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 41 L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
-...|...+|- .....||...|++...|-.+|.++-.-
T Consensus 21 A~~lf~~~G~~--~s~~~IA~~agvs~~tiY~~F~sK~~L 58 (224)
T 1t33_A 21 ALAQFGEYGLH--ATTRDIAALAGQNIAAITYYFGSKEDL 58 (224)
T ss_dssp HHHHHHHHGGG--SCHHHHHHHHTSCHHHHHHHHSSHHHH
T ss_pred HHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHhcCCHHHH
Confidence 33447777766 557888999999999999999887543
No 186
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=38.04 E-value=16 Score=21.34 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=31.6
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
+..-...|...+|- .....||...|++...|-..|.++-.-
T Consensus 15 l~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK~~L 55 (190)
T 3jsj_A 15 LEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESKDEL 55 (190)
T ss_dssp HHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCHHHH
T ss_pred HHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 44445557777776 567889999999999999999887543
No 187
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=37.89 E-value=67 Score=19.45 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q psy14049 31 TSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQAL 81 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~ 81 (93)
..+|..+.+.|.-.... . ...+||..++++...|++...+-+.|.
T Consensus 148 ~~LT~rE~~vL~~l~~g---~---s~~eIa~~l~is~~TV~~hi~~l~~KL 192 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEG---L---TNKQIADRMFLAEKTVKNYVSRLLAKL 192 (225)
T ss_dssp TTSCHHHHHHHHHHHTT---C---CHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHCC---C---CHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 35888888887765533 1 356789999999999999998777664
No 188
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=37.89 E-value=16 Score=19.37 Aligned_cols=23 Identities=13% Similarity=0.132 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|..+++
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~ 42 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRS 42 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999987654
No 189
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=37.72 E-value=10 Score=23.29 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=32.5
Q ss_pred CCCCCHHH-HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 30 RTSFTPQA-LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 30 r~~~t~~q-~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
+...+.+. +..-...|...+|-. .....||...|++...+-..|.++-.-
T Consensus 22 r~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~~K~~L 72 (211)
T 3fiw_A 22 MTKMNRETVITEALDLLDEVGLDG-VSTRRLAKRLGVEQPSLYWYFRTKRDL 72 (211)
T ss_dssp --CCCHHHHHHHHHHHHHHHCGGG-CCHHHHHHHHTSCTHHHHTTCSSHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHHHH
Confidence 34455544 344455566666543 236678999999999999999877543
No 190
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=37.42 E-value=6.3 Score=24.21 Aligned_cols=39 Identities=8% Similarity=0.015 Sum_probs=23.8
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 41 LNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 41 L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
-...|...+|-. .....||...|++...|-.+|.++-.-
T Consensus 44 A~~lf~~~G~~~-~s~~~IA~~AGvs~~tlY~~F~sKe~L 82 (237)
T 3kkd_A 44 AMRLIVRDGVRA-VRHRAVAAEAQVPLSATTYYFKDIDDL 82 (237)
T ss_dssp HHHHHHHHCGGG-CCHHHHHHHHTSCTTTC-----CHHHH
T ss_pred HHHHHHhcChhh-cCHHHHHHHhCCChhHHHHHcCCHHHH
Confidence 344477777643 236678999999999999999987543
No 191
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=37.04 E-value=42 Score=16.83 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhCC--ChHH---HHHHHH
Q psy14049 31 TSFTPQALELLNAHFE-----RNTHPSGTEITTLAHQLGY--EREV---IRIWFC 75 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~l--~~~~---v~~WFq 75 (93)
..++..+...+...|. .+.+.+..+...+...+|. +... |..+|.
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 60 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEAR 60 (86)
T ss_dssp CCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3467778888888873 4578899999888888874 4566 666664
No 192
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=36.88 E-value=22 Score=18.25 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|-.+++
T Consensus 30 q~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 30 MVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45899999999999999997654
No 193
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=36.85 E-value=26 Score=20.40 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=30.5
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q psy14049 39 ELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQAL 81 (93)
Q Consensus 39 ~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~ 81 (93)
......|...+|-... ...||...|++...+-.+|.++-.-.
T Consensus 10 ~aA~~lf~~~G~~~~s-~~~IA~~agvsk~t~Y~~F~sK~~L~ 51 (190)
T 3vpr_A 10 EEAAKLFTEKGYEATS-VQDLAQALGLSKAALYHHFGSKEEIL 51 (190)
T ss_dssp HHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHhCcccCC-HHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 3344457777765433 56789999999999999998876543
No 194
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=36.43 E-value=28 Score=19.27 Aligned_cols=23 Identities=9% Similarity=-0.016 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|-.+++
T Consensus 39 q~elA~~~gis~~~is~~E~G~~ 61 (111)
T 3mlf_A 39 QKELGDLFKVSSRTIQNMEKDST 61 (111)
T ss_dssp HHHHHHHHTSCHHHHHHHHHCCT
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45789999999999999988764
No 195
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=36.36 E-value=14 Score=22.61 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=29.8
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
+......|...+|-.. ....||...|++...+-..|.++-.
T Consensus 36 l~aA~~lf~~~G~~~~-t~~~IA~~Agvs~~t~Y~~F~sKe~ 76 (230)
T 2iai_A 36 LSVAVQVFIERGYDGT-SMEHLSKAAGISKSSIYHHVTGKEE 76 (230)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHTTTCSSHHH
T ss_pred HHHHHHHHHHcCcccc-CHHHHHHHHCCChhHHHHhCCCHHH
Confidence 4445555766776543 3667899999999999999987743
No 196
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=36.23 E-value=26 Score=20.19 Aligned_cols=41 Identities=22% Similarity=0.206 Sum_probs=30.7
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
+......|...+|-... ...||...|++...+-..|.++-.
T Consensus 15 l~aa~~l~~~~G~~~~t-v~~Ia~~agvs~~t~Y~~F~sK~~ 55 (195)
T 3ppb_A 15 LETALQLFVSQGFHGTS-TATIAREAGVATGTLFHHFPSKEQ 55 (195)
T ss_dssp HHHHHHHHHHTCSTTSC-HHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhcCcccCC-HHHHHHHhCCChhHHHHHcCCHHH
Confidence 44445557777775533 677899999999999999988744
No 197
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=35.80 E-value=33 Score=18.64 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=17.2
Q ss_pred HHHHHHHhCCChHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCN 76 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqn 76 (93)
...+|..+|+++.+|.-|=.+
T Consensus 27 Q~~vAe~~GvdeStISR~k~~ 47 (83)
T 1zs4_A 27 TEKTAEAVGVDKSQISRWKRD 47 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHhCCCHHHHhhhhhh
Confidence 456899999999999987543
No 198
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=35.70 E-value=27 Score=19.51 Aligned_cols=23 Identities=0% Similarity=-0.086 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|-.+++
T Consensus 28 q~~lA~~~gis~~~is~~E~g~~ 50 (126)
T 3ivp_A 28 REQVGAMIEIDPRYLTNIENKGQ 50 (126)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 46789999999999999998764
No 199
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=35.36 E-value=41 Score=16.29 Aligned_cols=43 Identities=12% Similarity=0.232 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhCC--ChHHHHHHHH
Q psy14049 33 FTPQALELLNAHFE-----RNTHPSGTEITTLAHQLGY--EREVIRIWFC 75 (93)
Q Consensus 33 ~t~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~l--~~~~v~~WFq 75 (93)
++..+...|...|. .+.+.+..+...+...+|. +...|...|.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 50 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMN 50 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 35677777888773 3567788888887777775 4455666664
No 200
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=35.08 E-value=9.8 Score=22.55 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=23.1
Q ss_pred HhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 44 HFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 44 ~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
.|...+|-. .....||...|++...+-.+|.++-.
T Consensus 37 lf~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 71 (212)
T 3nxc_A 37 LESSDGSQR-ITTAKLAASVGVSEAALYRHFPSKTR 71 (212)
T ss_dssp HHC-------CCHHHHHHHTTSCHHHHHTTCSSHHH
T ss_pred HHhcCChhh-cCHHHHHHHhCCChhHHHHHCCCHHH
Confidence 455555544 34677899999999999999987744
No 201
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=34.75 E-value=8.5 Score=23.67 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=28.4
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 41 LNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 41 L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
-...|...+|-.. ....||...|++...|-..|.++-.-
T Consensus 53 A~~lf~e~G~~~~-t~~~IA~~aGvs~~tlY~~F~sK~~L 91 (236)
T 3q0w_A 53 AENLLEDRPLADI-SVDDLAKGAGISRPTFYFYFPSKEAV 91 (236)
T ss_dssp HHHHHHHSCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHcCcccC-CHHHHHHHhCCcHHHHHHHCCCHHHH
Confidence 3344777776432 35678999999999999999887543
No 202
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=33.89 E-value=63 Score=17.96 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHhh-----h-CCCCCHHHHHHHHHHhC--CChHHHHHHHH
Q psy14049 31 TSFTPQALELLNAHFE-----R-NTHPSGTEITTLAHQLG--YEREVIRIWFC 75 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~-----~-~~~p~~~~~~~la~~~~--l~~~~v~~WFq 75 (93)
..++..++..|...|. . +.+.+..+...+...+| ++...+..+|.
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 10 EQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp GGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4678889998988883 3 56788888888888877 45666777764
No 203
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=33.66 E-value=26 Score=14.70 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=10.6
Q ss_pred hCCChHHHHHHHH
Q psy14049 63 LGYEREVIRIWFC 75 (93)
Q Consensus 63 ~~l~~~~v~~WFq 75 (93)
+-|++..|..||-
T Consensus 11 lmlspddi~qw~s 23 (28)
T 2b3g_B 11 LMLSPDDIEQWFT 23 (28)
T ss_dssp GGCCHHHHHHHHH
T ss_pred hhcChHHHHHHhh
Confidence 4578899999995
No 204
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=33.60 E-value=26 Score=19.54 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=16.9
Q ss_pred HHHHHHHhCCChHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFq 75 (93)
...+|..+|+++.+|..|=.
T Consensus 26 q~~vA~~iGV~~StISR~k~ 45 (97)
T 1xwr_A 26 TEKTAEAVGVDKSQISRWKR 45 (97)
T ss_dssp HHHHHHHHTCCTTTHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHh
Confidence 46789999999999999744
No 205
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=33.40 E-value=26 Score=19.12 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=18.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|-.+++
T Consensus 27 q~~lA~~~gis~~~is~~e~g~~ 49 (113)
T 2eby_A 27 INELAELLHVHRNSVSALINNNR 49 (113)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45688888999988888886653
No 206
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=33.34 E-value=23 Score=14.99 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=9.9
Q ss_pred HHHHHHhhHhhhcc
Q psy14049 75 CNKRQALKNTVRMM 88 (93)
Q Consensus 75 qnrR~k~kr~~~~~ 88 (93)
.|+|.+|+....++
T Consensus 7 RnRRRRWR~Rq~qi 20 (26)
T 1etf_B 7 RNRRRRWRERQRAA 20 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 57888888766554
No 207
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=33.31 E-value=89 Score=19.51 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q psy14049 32 SFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQAL 81 (93)
Q Consensus 32 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~ 81 (93)
.+|+.+.++|.-...- ..-.++|..+|+++..|+.-..+-+.|.
T Consensus 175 ~Lt~re~~vl~~~~~G------~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 175 RLTARETEMLKWTAVG------KTYGEIGLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp CCCHHHHHHHHHHHTT------CCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcC------CCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 4555555555443211 1246789999999999999887766554
No 208
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=33.06 E-value=27 Score=18.77 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|..+++
T Consensus 34 q~~lA~~~gis~~~is~~e~g~~ 56 (104)
T 3cec_A 34 TANFAEILGVSNQTIQEVINGQR 56 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCc
Confidence 46789999999999999987653
No 209
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=32.95 E-value=27 Score=18.76 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=18.6
Q ss_pred HHHHHHHhCCChHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCN 76 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqn 76 (93)
...||..+|++...|..|..+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 17 LSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 467899999999999999976
No 210
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=32.57 E-value=29 Score=20.43 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=29.7
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 39 ELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 39 ~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
..-...|...+|-... ...||...|++...+-..|.++-.
T Consensus 19 ~aA~~lf~~~G~~~~s-~~~IA~~aGvs~~tlY~~F~sKe~ 58 (197)
T 2hyt_A 19 ATARKVFSERGYADTS-MDDLTAQASLTRGALYHHFGDKKG 58 (197)
T ss_dssp HHHHHHHHHHCTTTCC-HHHHHHHHTCCTTHHHHHHSSHHH
T ss_pred HHHHHHHHHhCcccCC-HHHHHHHhCCCHHHHHHHcCCHHH
Confidence 3344457777775433 667899999999999999988744
No 211
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=32.50 E-value=30 Score=20.57 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=29.7
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 41 LNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 41 L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
-...|...+|-... ...||...|++...|-..|.++-.-
T Consensus 20 A~~lf~~~G~~~~s-~~~IA~~aGvskgtlY~~F~sKe~L 58 (210)
T 2wui_A 20 AERVFLEKGVGTTA-MADLADAAGVSRGAVYGHYKNKIEV 58 (210)
T ss_dssp HHHHHHHSCTTTCC-HHHHHHHHTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHcCccccC-HHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 34447888876533 6678999999999999999887543
No 212
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=32.43 E-value=49 Score=17.82 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHH
Q psy14049 55 EITTLAHQLGYEREVIRIWFCN 76 (93)
Q Consensus 55 ~~~~la~~~~l~~~~v~~WFqn 76 (93)
....||..+|+++..+...|+.
T Consensus 23 ~~~~lA~~~~~S~~~l~r~fk~ 44 (108)
T 3oou_A 23 SLKTLGNDFHINAVYLGQLFQK 44 (108)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 4667888899998888877754
No 213
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=32.35 E-value=37 Score=17.98 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChHH----HHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREV----IRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~----v~~WFqnrR 78 (93)
...||..+|++... |..|-.+++
T Consensus 17 q~~lA~~~gis~~~~~~~is~~E~g~~ 43 (98)
T 3lfp_A 17 QEKLGVLAGIDEASASARMNQYEKGKH 43 (98)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCcchhhhHHHHHHCCCC
Confidence 46789999999999 999987653
No 214
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=32.14 E-value=37 Score=17.49 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=18.0
Q ss_pred HHHHHHHhCCChHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCN 76 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqn 76 (93)
...||..+|++...|..|..+
T Consensus 25 ~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 25 LSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHHHSSCHHHHHHTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 456899999999999999764
No 215
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=32.14 E-value=40 Score=19.46 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=17.1
Q ss_pred HHHHHHHhCCChHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFq 75 (93)
..++|..+|++...|+.|=.
T Consensus 3 I~e~A~~~gvs~~tLR~ye~ 22 (135)
T 1q06_A 3 ISDVAKITGLTSKAIRFYEE 22 (135)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 35689999999999999965
No 216
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=32.14 E-value=76 Score=18.37 Aligned_cols=41 Identities=22% Similarity=0.211 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhCCChHHHHHHHH
Q psy14049 35 PQALELLNAHFE-----RNTHPSGTEITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 35 ~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~l~~~~v~~WFq 75 (93)
..++..|...|. .+.+.+..+...+...+|+++..+...|.
T Consensus 35 ~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~~~~~~~~~ 80 (180)
T 3mse_B 35 NNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGIKKWDINRILQ 80 (180)
T ss_dssp HHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 566777777773 35788889988888899998877777764
No 217
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=32.07 E-value=32 Score=20.40 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=30.1
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
+......|...+|-.. ....||...|++...+-.+|.++-.
T Consensus 36 l~aA~~l~~~~G~~~~-t~~~IA~~aGvs~~t~Y~~F~sK~~ 76 (222)
T 3bru_A 36 IRAGLEHLTEKGYSSV-GVDEILKAARVPKGSFYHYFRNKAD 76 (222)
T ss_dssp HHHHHHHHHHSCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCCCcC-cHHHHHHHhCCCcchhhhhCCCHHH
Confidence 3344445777777543 3667899999999999999988744
No 218
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=31.89 E-value=30 Score=20.07 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=29.1
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 40 LLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 40 ~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
.-...|...+|-... ...||...|++...+-..|.++-.
T Consensus 25 aa~~l~~~~G~~~~s-~~~Ia~~agvs~~t~Y~~F~sK~~ 63 (206)
T 3kz9_A 25 IALEVFARRGIGRGG-HADIAEIAQVSVATVFNYFPTRED 63 (206)
T ss_dssp HHHHHHHHSCCSSCC-HHHHHHHHTSCHHHHHHHCCSHHH
T ss_pred HHHHHHHhcCccccc-HHHHHHHhCCCHHHHHHHcCCHHH
Confidence 334447777776433 567899999999999999988743
No 219
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=31.79 E-value=35 Score=19.96 Aligned_cols=41 Identities=15% Similarity=0.275 Sum_probs=30.3
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
+......|...+|-... ...||...|++...+-..|.++-.
T Consensus 22 l~aa~~lf~~~G~~~~t-~~~Ia~~agvs~~t~Y~~F~sK~~ 62 (213)
T 2qtq_A 22 LQTASNIMREGDVVDIS-LSELSLRSGLNSALVKYYFGNKAG 62 (213)
T ss_dssp HHHHHHHHHHHTSSCCC-HHHHHHHHCCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHcCccccc-HHHHHHHhCCChhhHhHhcCCHHH
Confidence 34445557777775433 667899999999999999988744
No 220
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=31.68 E-value=40 Score=19.74 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=17.2
Q ss_pred HHHHHHHhCCChHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFq 75 (93)
..++|..+|++...|+.|=.
T Consensus 5 I~e~A~~~gvs~~tLR~Ye~ 24 (142)
T 3gp4_A 5 IKEASEKSGVSADTIRYYER 24 (142)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999999965
No 221
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=31.62 E-value=30 Score=17.98 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~E~G~~ 52 (86)
T 3eus_A 30 QADLAERLDKPQSFVAKVETRER 52 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 45789999999999999987654
No 222
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=31.61 E-value=27 Score=20.20 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=29.1
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
+......|...+|-.. ....||...|++...+-..|.++-.
T Consensus 8 l~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~ 48 (194)
T 3bqz_B 8 LGVAKELFIKNGYNAT-TTGEIVKLSESSKGNLYYHFKTKEN 48 (194)
T ss_dssp HHHHHHHHHHHTTTTC-CHHHHHHHTTCCHHHHHHHTSSHHH
T ss_pred HHHHHHHHHHcCCccC-CHHHHHHHhCCCchhHHHhCCCHHH
Confidence 3344455666666543 3667899999999999999988743
No 223
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=31.46 E-value=14 Score=22.94 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=29.3
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 39 ELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 39 ~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
..-...|...+|-.. ....||...|++...+-.+|.++-.-
T Consensus 50 ~AA~~lf~~~G~~~~-t~~~IA~~aGvs~~tlY~~F~sK~~L 90 (255)
T 3g1o_A 50 ATAENLLEDRPLADI-SVDDLAKGAGISRPTFYFYFPSKEAV 90 (255)
T ss_dssp HHHHHHHTTSCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHcCCccC-cHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 334444777766432 35678999999999999999887543
No 224
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=31.33 E-value=26 Score=20.39 Aligned_cols=41 Identities=7% Similarity=0.190 Sum_probs=30.4
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
+..-...|...+|-.. ....||...|++...+-.+|.++-.
T Consensus 13 l~aA~~lf~~~G~~~~-t~~~IA~~agvs~~tlY~~F~sK~~ 53 (192)
T 2zcm_A 13 IDNAITLFSEKGYDGT-TLDDISKSVNIKKASLYYHYDNKEE 53 (192)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHTTCCHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHhCCChHHHHHHCCCHHH
Confidence 4444555777777543 3667899999999999999988744
No 225
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=31.27 E-value=42 Score=19.75 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=17.1
Q ss_pred HHHHHHHhCCChHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFq 75 (93)
..++|..+|++...|+.|=.
T Consensus 7 I~evA~~~Gvs~~tLR~ye~ 26 (146)
T 3hh0_A 7 ISEFASVGDVTVRALRYYDK 26 (146)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45689999999999999965
No 226
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=31.21 E-value=36 Score=20.18 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=30.2
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
+..-...|...+|-.. ....||...|++...+-.+|.++-.-
T Consensus 14 l~aA~~lf~~~G~~~~-s~~~IA~~aGvs~~tiY~~F~sKe~L 55 (202)
T 2d6y_A 14 FEAAVAEFARHGIAGA-RIDRIAAEARANKQLIYAYYGNKGEL 55 (202)
T ss_dssp HHHHHHHHHHHTTTSC-CHHHHHHHHTCCHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 3344455777776443 36678999999999999999887443
No 227
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=31.01 E-value=36 Score=19.45 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=29.5
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 39 ELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 39 ~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
......|...+|-.. ....||...|++...+-..|.++-.
T Consensus 15 ~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~ 54 (188)
T 3qkx_A 15 SATDRLMAREGLNQL-SMLKLAKEANVAAGTIYLYFKNKDE 54 (188)
T ss_dssp HHHHHHHHHSCSTTC-CHHHHHHHHTCCHHHHHHHSSSHHH
T ss_pred HHHHHHHHhcCcccC-CHHHHHHHhCCCcchHHHHcCCHHH
Confidence 334445777777543 3667899999999999999987743
No 228
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=30.93 E-value=65 Score=17.23 Aligned_cols=22 Identities=23% Similarity=0.120 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHH
Q psy14049 55 EITTLAHQLGYEREVIRIWFCN 76 (93)
Q Consensus 55 ~~~~la~~~~l~~~~v~~WFqn 76 (93)
....||..+|+++..+..-|+.
T Consensus 20 ~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 20 TIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHH
Confidence 4567888999998888877764
No 229
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=30.92 E-value=57 Score=16.50 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhCC--ChHHHHHHHH
Q psy14049 32 SFTPQALELLNAHFE-----RNTHPSGTEITTLAHQLGY--EREVIRIWFC 75 (93)
Q Consensus 32 ~~t~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~l--~~~~v~~WFq 75 (93)
.++..+...|...|. .+.+.+..+...+...+|. +...|...|.
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 477888888888884 3567888888888888874 5677777774
No 230
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=30.72 E-value=25 Score=20.86 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=29.5
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 41 LNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 41 L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
-...|...+|-... ...||...|++...|-.+|.++-.-
T Consensus 19 A~~lf~~~G~~~~s-~~~IA~~aGvs~~t~Y~~F~sKe~L 57 (210)
T 3vib_A 19 ALETFYRKGIARTS-LNEIAQAAGVTRDALYWHFKNKEDL 57 (210)
T ss_dssp HHHHHHHHCTTTCC-HHHHHHHHTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHhCcccCC-HHHHHHHHCcCHHHHHHHCCCHHHH
Confidence 33447777775533 6678999999999999999887543
No 231
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=30.71 E-value=35 Score=19.88 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=30.0
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
+......|...+|-. .....||...|++...+-.+|.++-.
T Consensus 10 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 50 (185)
T 2yve_A 10 LRTAIDYIGEYSLET-LSYDSLAEATGLSKSGLIYHFPSRHA 50 (185)
T ss_dssp HHHHHHHHHHSCSTT-CCHHHHHHHHCCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcChhh-ccHHHHHHHhCCChHHHHHhCcCHHH
Confidence 344445577777754 33667899999999999999988744
No 232
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=30.56 E-value=81 Score=18.20 Aligned_cols=26 Identities=12% Similarity=0.289 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHhCCChHHHHHHHH
Q psy14049 50 HPSGTEITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 50 ~p~~~~~~~la~~~~l~~~~v~~WFq 75 (93)
.++..+...|+..++++..+|+.||.
T Consensus 7 ~l~~~~l~~l~~~~~~~~~~i~~~f~ 32 (193)
T 1bjf_A 7 KLRPEVMQDLLESTDFTEHEIQEWYK 32 (193)
T ss_dssp CCCHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34555666677777888888888875
No 233
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=30.55 E-value=32 Score=18.61 Aligned_cols=23 Identities=26% Similarity=0.121 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|-.+++
T Consensus 44 q~elA~~~gis~~~is~iE~G~~ 66 (99)
T 3g5g_A 44 QEDLAYKSNLDRTYISGIERNSR 66 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46789999999999999987653
No 234
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=30.19 E-value=76 Score=17.74 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=18.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHH
Q psy14049 55 EITTLAHQLGYEREVIRIWFCNK 77 (93)
Q Consensus 55 ~~~~la~~~~l~~~~v~~WFqnr 77 (93)
....+|..+++.+..+..|+..-
T Consensus 22 ~~~~la~~~~~~~~~~~~~l~~l 44 (121)
T 2pjp_A 22 WVRDLAKETGTDEQAMRLTLRQA 44 (121)
T ss_dssp EHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHH
Confidence 44579999999999999998643
No 235
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=30.19 E-value=10 Score=22.24 Aligned_cols=38 Identities=8% Similarity=0.224 Sum_probs=28.2
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 41 LNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 41 L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
....|...+|-.. ....||...|++...+-..|.++-.
T Consensus 23 a~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~ 60 (203)
T 3f1b_A 23 AVDVFSDRGFHET-SMDAIAAKAEISKPMLYLYYGSKDE 60 (203)
T ss_dssp HHHHHHHHCTTTC-CHHHHHHHTTSCHHHHHHHCCSHHH
T ss_pred HHHHHHHcCcccc-cHHHHHHHhCCchHHHHHHhCCHHH
Confidence 3444666776443 3667899999999999999988744
No 236
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=29.90 E-value=35 Score=20.33 Aligned_cols=24 Identities=8% Similarity=0.135 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHH
Q psy14049 55 EITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 55 ~~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...+||..+|++...|..|....+
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g~~ 45 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTRGA 45 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHSSS
T ss_pred CHHHHHHHhCcCHHHHHHHHhCCC
Confidence 467899999999999999997654
No 237
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=29.85 E-value=85 Score=18.48 Aligned_cols=21 Identities=14% Similarity=0.370 Sum_probs=9.6
Q ss_pred HHHHHHHHhCCChHHHHHHHH
Q psy14049 55 EITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 55 ~~~~la~~~~l~~~~v~~WFq 75 (93)
+...+...++++..+|..+|.
T Consensus 20 el~~~~~~~~~~~~~i~~~f~ 40 (207)
T 2d8n_A 20 ILEELQLNTKFSEEELCSWYQ 40 (207)
T ss_dssp HHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 333334444455555555553
No 238
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=29.59 E-value=74 Score=17.42 Aligned_cols=42 Identities=7% Similarity=0.150 Sum_probs=27.5
Q ss_pred CCCCCHHHHH-HHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHH
Q psy14049 30 RTSFTPQALE-LLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCN 76 (93)
Q Consensus 30 r~~~t~~q~~-~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqn 76 (93)
+.+++.+... ++..... .. ....++|...+++..+|..|-..
T Consensus 30 ~rrWs~~~Kl~VV~~~~~-g~----~s~~e~arry~Is~s~i~~W~r~ 72 (95)
T 2jrt_A 30 TRRWVASRKAAVVKAVIH-GL----ITEREALDRYSLSEEEFALWRSA 72 (95)
T ss_dssp CCCCCHHHHHHHHHHHHT-TS----SCHHHHHHHTTCCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHc-CC----CCHHHHHHHhCCCHHHHHHHHHH
Confidence 4457777644 4444332 21 12557899999999999999853
No 239
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=29.45 E-value=23 Score=21.00 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=28.8
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 41 LNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 41 L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
-...|...+|-... ...||...|++...+-.+|.++-.
T Consensus 20 A~~lf~~~G~~~~s-~~~IA~~aGvskgtlY~~F~sKe~ 57 (210)
T 2xdn_A 20 AERAFYKRGVARTT-LADIAELAGVTRGAIYWHFNNKAE 57 (210)
T ss_dssp HHHHHHHHCSTTCC-HHHHHHHHTCCTTHHHHHCSSHHH
T ss_pred HHHHHHHcCcccCc-HHHHHHHHCCChHHHHHHhCCHHH
Confidence 34447777775433 667899999999999999988744
No 240
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=29.29 E-value=75 Score=17.39 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHhh----hCCCCCHHHHHHHHHHhCCChHHHHHHHH
Q psy14049 31 TSFTPQALELLNAHFE----RNTHPSGTEITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~----~~~~p~~~~~~~la~~~~l~~~~v~~WFq 75 (93)
..++.++...+...|. .+.+.+..+...+...+|++...+...|.
T Consensus 7 w~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~~el~~i~~ 55 (106)
T 1eh2_A 7 WAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVWE 55 (106)
T ss_dssp CSSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4577888888888884 35678888888888888888887776653
No 241
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=29.12 E-value=37 Score=19.58 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=25.9
Q ss_pred HHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 42 NAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 42 ~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
...|...+|-. .....||...|++...+-.+|.++-.
T Consensus 24 ~~l~~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~ 60 (191)
T 4aci_A 24 RRCFAEHGYEG-ATVRRLEEATGKSRGAIFHHFGDKEN 60 (191)
T ss_dssp HHHHHHHHHHH-CCHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred HHHHHHhCccc-CCHHHHHHHHCCCchHHHHHCCCHHH
Confidence 33455444321 23567899999999999999988744
No 242
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=29.05 E-value=73 Score=17.22 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHH
Q psy14049 54 TEITTLAHQLGYEREVIRIWFCN 76 (93)
Q Consensus 54 ~~~~~la~~~~l~~~~v~~WFqn 76 (93)
.....||..+|+++..+...|+.
T Consensus 24 ~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 24 LSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHH
Confidence 45677899999999888877764
No 243
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=29.00 E-value=28 Score=20.43 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=29.2
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR 78 (93)
+......|...+|-.. ....||...|++...+-..|.++-
T Consensus 23 l~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~ 62 (207)
T 2rae_A 23 STVGIELFTEQGFDAT-SVDEVAEASGIARRTLFRYFPSKN 62 (207)
T ss_dssp HHHHHHHHHHHCTTTS-CHHHHHHHTTSCHHHHHHHCSSTT
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHhCCCcchHhhhCCCHH
Confidence 3344445777777543 366789999999999999998763
No 244
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=28.86 E-value=37 Score=19.54 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHh
Q psy14049 55 EITTLAHQLGYEREVIRIWFCNKRQAL 81 (93)
Q Consensus 55 ~~~~la~~~~l~~~~v~~WFqnrR~k~ 81 (93)
....||...|++...+-..|.++-.-.
T Consensus 29 t~~~IA~~agvs~~tlY~~F~sK~~L~ 55 (186)
T 2jj7_A 29 SIQEIAKEAKVNVAMASYYFNGKENLY 55 (186)
T ss_dssp CHHHHHHHHTSCHHHHHHHHSSHHHHH
T ss_pred CHHHHHHHhCCChhhhhhhcCCHHHHH
Confidence 356789999999999999998875443
No 245
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=28.82 E-value=33 Score=18.79 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|-.+++
T Consensus 44 q~~lA~~~gis~~~is~~E~g~~ 66 (117)
T 3f52_A 44 LRELAEASRVSPGYLSELERGRK 66 (117)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46789999999999999987654
No 246
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=28.70 E-value=75 Score=17.23 Aligned_cols=34 Identities=12% Similarity=0.346 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhCCC
Q psy14049 33 FTPQALELLNAHFE-----RNTHPSGTEITTLAHQLGYE 66 (93)
Q Consensus 33 ~t~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~l~ 66 (93)
|+..++..|...|. .+.+.+..+...+...+|+.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 39 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKN 39 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCC
Confidence 57788888888884 35678888888877777753
No 247
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=28.67 E-value=43 Score=17.61 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=16.2
Q ss_pred HHHHHHHHhCCChHHHHHHHH
Q psy14049 55 EITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 55 ~~~~la~~~~l~~~~v~~WFq 75 (93)
...+||..+|++...|..-..
T Consensus 26 sv~EIa~~lgvS~~TVrr~L~ 46 (77)
T 2jt1_A 26 KTRDIADAAGLSIYQVRLYLE 46 (77)
T ss_dssp EHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHH
Confidence 466789999999887776654
No 248
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=28.62 E-value=29 Score=20.22 Aligned_cols=39 Identities=13% Similarity=0.051 Sum_probs=28.7
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 40 LLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 40 ~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
.....|...+|-. .....||...|++...+-..|.++-.
T Consensus 20 aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 58 (202)
T 3lwj_A 20 CSLDLFIEKGYYN-TSIRDIIALSEVGTGTFYNYFVDKED 58 (202)
T ss_dssp HHHHHHHHHCTTT-CCHHHHHHHHCSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHcCccc-CCHHHHHHHhCCCchhHHHHcCCHHH
Confidence 3444477777644 33667899999999999999988744
No 249
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=28.43 E-value=48 Score=19.47 Aligned_cols=20 Identities=20% Similarity=0.081 Sum_probs=17.4
Q ss_pred HHHHHHHhCCChHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFq 75 (93)
..++|..+|++...|+.|=.
T Consensus 19 I~evA~~~gvs~~tLR~Ye~ 38 (148)
T 3gpv_A 19 IGQVAKMQHLTISQIRYYDK 38 (148)
T ss_dssp HHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 56789999999999999964
No 250
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=28.32 E-value=30 Score=19.94 Aligned_cols=39 Identities=8% Similarity=0.167 Sum_probs=28.8
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 40 LLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 40 ~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
.-...|...+|-... ...||...|++...+-..|.++-.
T Consensus 10 aA~~lf~~~Gy~~~s-~~~Ia~~agvskgtlY~~F~sKe~ 48 (179)
T 2eh3_A 10 VSKELFFEKGYQGTS-VEEIVKRANLSKGAFYFHFKSKEE 48 (179)
T ss_dssp HHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHcCCccCC-HHHHHHHhCCCcHHHHHHcCCHHH
Confidence 334457777775433 667899999999999999987744
No 251
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=28.17 E-value=36 Score=18.71 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=18.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|-.+++
T Consensus 30 q~eLA~~lGis~~~is~ie~G~~ 52 (104)
T 3trb_A 30 ANQLAKHLAIPTNRVTAILNGAR 52 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56689999999999998887654
No 252
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=28.06 E-value=55 Score=17.81 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|-.+++
T Consensus 52 q~elA~~~gis~~~is~~E~G~~ 74 (107)
T 2jvl_A 52 QAELGKEIGETAATVASYERGTA 74 (107)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45689999999999999987654
No 253
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=27.90 E-value=63 Score=17.77 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHH
Q psy14049 54 TEITTLAHQLGYEREVIRIWFCN 76 (93)
Q Consensus 54 ~~~~~la~~~~l~~~~v~~WFqn 76 (93)
.....||..+|+++..+...|+.
T Consensus 24 ~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 24 WTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHH
Confidence 34677899999999988888753
No 254
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=27.72 E-value=30 Score=20.00 Aligned_cols=35 Identities=9% Similarity=0.225 Sum_probs=26.9
Q ss_pred HHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 42 NAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 42 ~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
...|... .......||...|++...+-.+|.++-.
T Consensus 24 ~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK~~ 58 (190)
T 2v57_A 24 MLVLADH---PTAALGDIAAAAGVGRSTVHRYYPERTD 58 (190)
T ss_dssp HHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 3345544 5566788999999999999999988744
No 255
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=27.65 E-value=1.2e+02 Score=21.10 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhh
Q psy14049 33 FTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82 (93)
Q Consensus 33 ~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~k 82 (93)
++..+..++...|..... ......+||..+|++...|+......+.+.|
T Consensus 361 L~~rer~Vl~lr~~L~~~-e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 361 LSEREAMVLKLRKGLIDG-REHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SCHHHHHHHHHHHHTTCC------CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 445555556555532211 2345678999999999999999988887777
No 256
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=27.53 E-value=87 Score=17.57 Aligned_cols=45 Identities=11% Similarity=0.170 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhCC---ChHHHHHHHHH
Q psy14049 32 SFTPQALELLNAHFE-----RNTHPSGTEITTLAHQLGY---EREVIRIWFCN 76 (93)
Q Consensus 32 ~~t~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~l---~~~~v~~WFqn 76 (93)
.++..++..|...|. .+.+.+..+...+...+|. +...+...|..
T Consensus 18 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~ 70 (166)
T 2mys_B 18 MFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKE 70 (166)
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 578889999999984 4668888888888888876 55667766653
No 257
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=27.50 E-value=56 Score=17.83 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
..+||..+|++...|..|-.+++
T Consensus 37 q~elA~~~gis~~~is~~E~G~~ 59 (114)
T 3vk0_A 37 QEELARQCGLDRTYVSAVERKRW 59 (114)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999987653
No 258
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=27.44 E-value=34 Score=19.80 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=28.8
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 39 ELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 39 ~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
......|...+|-. .....||...|++...+-.+|.++-.
T Consensus 15 ~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 54 (206)
T 3dew_A 15 EVATELFAQKGFYG-VSIRELAQAAGASISMISYHFGGKEG 54 (206)
T ss_dssp HHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHSCHHHH
T ss_pred HHHHHHHhcCCccc-CcHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 33444466666533 23567899999999999999988754
No 259
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=27.27 E-value=57 Score=17.89 Aligned_cols=22 Identities=18% Similarity=0.066 Sum_probs=18.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNK 77 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnr 77 (93)
..+||..+|++...|..|=.++
T Consensus 52 Q~eLA~~~gvs~~~is~~E~G~ 73 (101)
T 4ghj_A 52 QSEVAEIAGIARKTVLNAEKGK 73 (101)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTC
T ss_pred HHHHHHHcCCCHHHHHHHHCCC
Confidence 4678999999999999887554
No 260
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=27.25 E-value=13 Score=22.75 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 53 GTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 53 ~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
.....++|..+|++...|+.+...-+.+
T Consensus 214 g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 214 DQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp ----------------------------
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3456789999999999999888755443
No 261
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=27.21 E-value=82 Score=17.16 Aligned_cols=45 Identities=11% Similarity=0.093 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhCCChHHHHHHHH
Q psy14049 31 TSFTPQALELLNAHFE-----RNTHPSGTEITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~l~~~~v~~WFq 75 (93)
..++.++...+...|. .+.+.+..+...+....+++...|..+|.
T Consensus 6 w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~~ 55 (111)
T 2kgr_A 6 WAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWN 55 (111)
T ss_dssp SSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4577888888888884 35577888777776667788777777664
No 262
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=27.03 E-value=1.7e+02 Score=20.66 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhh
Q psy14049 33 FTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82 (93)
Q Consensus 33 ~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~k 82 (93)
++..+..++...|..... ......+||..+|++...|+.....-+.+.|
T Consensus 376 L~ereR~VI~LRygL~~~-e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 376 LSEREAMVLKLRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred CCHHHHHHHHHHHhccCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 445555556555532111 1235678999999999999999987777776
No 263
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=26.90 E-value=64 Score=16.30 Aligned_cols=20 Identities=25% Similarity=0.117 Sum_probs=17.2
Q ss_pred HHHHHHHhCCChHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFq 75 (93)
...+|..||++..-|..|..
T Consensus 16 ~t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 16 QTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHH
Confidence 45679999999999999974
No 264
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=26.81 E-value=33 Score=20.12 Aligned_cols=39 Identities=10% Similarity=0.019 Sum_probs=28.7
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 40 LLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 40 ~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
.....|...+|-.. ....||...|++...+-..|.++-.
T Consensus 22 aa~~l~~~~G~~~~-ti~~IA~~agvs~~t~Y~~F~sK~~ 60 (212)
T 3knw_A 22 SGFHLVLRKGFVGV-GLQEILKTSGVPKGSFYHYFESKEA 60 (212)
T ss_dssp HHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHcCCccC-CHHHHHHHhCCChHHHHHHCCCHHH
Confidence 34444666676543 3667899999999999999988754
No 265
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=26.77 E-value=28 Score=20.41 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=28.4
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 40 LLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 40 ~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
.-...|...+|-.. ....||...|++...+-.+|.++-.
T Consensus 16 aA~~lf~~~G~~~~-t~~~IA~~agvs~~tlY~~F~sK~~ 54 (199)
T 2o7t_A 16 TTCNLYRTHHHDSL-TMENIAEQAGVGVATLYRNFPDRFT 54 (199)
T ss_dssp HHHHHHHHSCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHCCCccC-CHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 33444666766432 3667899999999999999988743
No 266
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=26.76 E-value=22 Score=20.65 Aligned_cols=39 Identities=23% Similarity=0.214 Sum_probs=28.0
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 40 LLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 40 ~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
.....|...+|-.. ....||...|++...+-..|.++-.
T Consensus 15 aa~~l~~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~~ 53 (199)
T 3qbm_A 15 QAAALFNVSGYAGT-AISDIMAATGLEKGGIYRHFESKEQ 53 (199)
T ss_dssp HHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHHTTCSSHHH
T ss_pred HHHHHHHHhCcCcC-CHHHHHHHhCCCccHHHHhCCCHHH
Confidence 33444666666543 3567899999999999999987743
No 267
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=26.70 E-value=48 Score=19.21 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...||..+|++...|..|..+++
T Consensus 84 q~elA~~lGis~s~is~~E~G~~ 106 (141)
T 3kxa_A 84 QSELATAAGLPQPYLSRIENSKQ 106 (141)
T ss_dssp HHHHHHHTTCCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35689999999999999998764
No 268
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=26.60 E-value=1.3e+02 Score=19.23 Aligned_cols=46 Identities=9% Similarity=0.141 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhh
Q psy14049 31 TSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~k 82 (93)
..+|..+.++|.-...-. ...++|..+|+++..|+....+-+.|..
T Consensus 196 ~~Lt~re~~vl~~~~~G~------s~~eIA~~l~is~~TV~~~~~~~~~kl~ 241 (265)
T 3qp6_A 196 MPLSQREYDIFHWMSRGK------TNWEIATILNISERTVKFHVANVIRKLN 241 (265)
T ss_dssp CCCCHHHHHHHHHHHTTC------CHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 467888888887664221 2567899999999999999988776654
No 269
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=26.57 E-value=77 Score=16.70 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=16.5
Q ss_pred HHHHHHHhCCChHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFq 75 (93)
..+||..+|++...|...+.
T Consensus 30 ~~eLA~~Lgvsr~tV~~~L~ 49 (81)
T 1qbj_A 30 AHDLSGKLGTPKKEINRVLY 49 (81)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999998887764
No 270
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=26.44 E-value=46 Score=19.46 Aligned_cols=40 Identities=13% Similarity=0.254 Sum_probs=29.7
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 39 ELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 39 ~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
......|...+|-.. ....||...|++...+-..|.++-.
T Consensus 19 ~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~~K~~ 58 (189)
T 3vp5_A 19 DACLNEFQTHSFHEA-KIMHIVKALDIPRGSFYQYFEDLKD 58 (189)
T ss_dssp HHHHHHHHHSCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHCCcccc-cHHHHHHHhCCChHHHHHHCCCHHH
Confidence 344455777777554 4677899999999999999987743
No 271
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=26.21 E-value=30 Score=19.68 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=28.4
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 40 LLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 40 ~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
.....|...+|-. .....||...|++...+-..|.++-.
T Consensus 12 aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 50 (170)
T 3egq_A 12 AALRLYMKKPPHE-VSIEEIAREAKVSKSLIFYHFESKQK 50 (170)
T ss_dssp HHHHHHTTSCGGG-CCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHhcCCcc-CcHHHHHHHhCCCchhHHHHcCCHHH
Confidence 3344566676643 33667899999999999999988754
No 272
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=26.20 E-value=48 Score=19.61 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=29.1
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 41 LNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 41 L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
-...|...+|-.. ....||...|++...|-..|.|+-.-
T Consensus 21 A~~lf~~~G~~~t-s~~~IA~~aGvsk~tlY~~F~sKe~L 59 (211)
T 3bhq_A 21 ATAAFISKGYDGT-SMEEIATKAGASKQTVYKHFTDKETL 59 (211)
T ss_dssp HHHHHHHHCSTTC-CHHHHHHHHTCCHHHHHHHHCSHHHH
T ss_pred HHHHHHHhCcccC-CHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 3444777777543 36678999999999999999887443
No 273
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=26.10 E-value=31 Score=20.36 Aligned_cols=39 Identities=13% Similarity=0.086 Sum_probs=28.7
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 40 LLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 40 ~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
.-...|...+|-.. ....||...|++...+-..|.++-.
T Consensus 17 aA~~lf~~~G~~~~-t~~~Ia~~Agvs~gt~Y~yF~sKe~ 55 (204)
T 3anp_C 17 AAMELFRNRGFQET-TATEIAKAAHVSRGTFFNYYPYKEA 55 (204)
T ss_dssp HHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHHHHCSSTHH
T ss_pred HHHHHHHHcCcccc-cHHHHHHHcCCchHHHHHHcCCHHH
Confidence 33444777777543 3667899999999999999987743
No 274
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=26.07 E-value=57 Score=19.36 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=17.5
Q ss_pred HHHHHHHhCCChHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCN 76 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqn 76 (93)
..++|..+|++...|+.|=..
T Consensus 14 i~e~A~~~gvs~~TLR~ye~~ 34 (154)
T 2zhg_A 14 PGEVAKRSGVAVSALHFYESK 34 (154)
T ss_dssp HHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHHc
Confidence 456899999999999999653
No 275
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=26.00 E-value=31 Score=20.18 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=24.5
Q ss_pred hhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHH
Q psy14049 45 FERNTHPSGTEITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 45 f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR 78 (93)
|...+|-. .....||...|++...|-.+|.++-
T Consensus 31 f~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~sKe 63 (212)
T 3loc_A 31 FSQFGFHG-TRLEQIAELAGVSKTNLLYYFPSKE 63 (212)
T ss_dssp HHHHHHHH-CCHHHHHHHHTSCHHHHHHHSSSHH
T ss_pred HHHhCccc-CCHHHHHHHHCcCHHHHhhhCCCHH
Confidence 55544422 2367789999999999999998874
No 276
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=25.91 E-value=14 Score=22.39 Aligned_cols=40 Identities=8% Similarity=-0.067 Sum_probs=28.7
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 40 LLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 40 ~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
.-...|...+|-. .....||...|++...|-..|.++-.-
T Consensus 36 AA~~lf~~~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~~L 75 (217)
T 3hta_A 36 AAIRVVGQKGIAG-LSHRTVAAEADVPLGSTTYHFATLDDL 75 (217)
T ss_dssp HHHHHHHHHTGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHcCccc-CCHHHHHHHcCCCcchhhhcCCCHHHH
Confidence 3344466666633 336678999999999999999887543
No 277
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=25.75 E-value=35 Score=20.00 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=28.2
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 41 LNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 41 L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
....|...+|-. .....||...|++...+-..|.++-.
T Consensus 27 a~~l~~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~~ 64 (212)
T 1pb6_A 27 ALDTFSQFGFHG-TRLEQIAELAGVSKTNLLYYFPSKEA 64 (212)
T ss_dssp HHHHHHHHCTTT-CCHHHHHHHTTSCHHHHHHHSSSHHH
T ss_pred HHHHHHHcCcch-hhHHHHHHHHCCChhHHHHhCCCHHH
Confidence 334466677644 33667899999999999999988744
No 278
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=25.68 E-value=31 Score=19.83 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=21.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 55 EITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 55 ~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
....||...|++...+-.+|.++-.
T Consensus 30 t~~~Ia~~agvs~~t~Y~~F~sK~~ 54 (195)
T 3pas_A 30 SVGKIAKAAGLSPATLYIYYEDKEQ 54 (195)
T ss_dssp CHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred CHHHHHHHhCCCchHHHHHcCCHHH
Confidence 3667899999999999999988744
No 279
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=25.62 E-value=34 Score=20.99 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=29.2
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 40 LLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 40 ~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
.-...|...+|-.. ....||...|++...|-.+|.++-.
T Consensus 31 aA~~lf~~~G~~~~-s~~~IA~~agvs~~tlY~~F~sKe~ 69 (231)
T 2zcx_A 31 AARELGTERGIREI-TLTDIAATVGMHKSALLRYFETREQ 69 (231)
T ss_dssp HHHHHHHHHCSTTC-CHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHhCCcccC-CHHHHHHHhCCCHHHHHHhCCCHHH
Confidence 34444777777543 3667899999999999999988744
No 280
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=25.60 E-value=22 Score=21.24 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=29.6
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
+..-...|...+|-.. ....||...|++...+-.+|.|+-.
T Consensus 14 l~aA~~lf~~~Gy~~~-s~~~IA~~AGvs~gt~Y~yF~sKe~ 54 (206)
T 1vi0_A 14 IDAAVEVIAENGYHQS-QVSKIAKQAGVADGTIYLYFKNKED 54 (206)
T ss_dssp HHHHHHHHHHHCGGGC-CHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCChhHHHHHcCCHHH
Confidence 3344455777776432 3567899999999999999988744
No 281
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=25.52 E-value=36 Score=19.95 Aligned_cols=38 Identities=13% Similarity=0.271 Sum_probs=28.7
Q ss_pred HHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 42 NAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 42 ~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
...|...+|-... ...||...|++...|-..|.|+-.-
T Consensus 20 ~~lf~~~G~~~~s-~~~IA~~aGvs~gtlY~yF~sKe~L 57 (194)
T 2nx4_A 20 WRLIAARGIEAAN-MRDIATEAGYTNGALSHYFAGKDEI 57 (194)
T ss_dssp HHHHHHHCTTTCC-HHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHhcCcccCC-HHHHHHHhCCCcchHHHhCcCHHHH
Confidence 3447777776533 5678999999999999999887543
No 282
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=25.50 E-value=73 Score=17.86 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=19.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHH
Q psy14049 54 TEITTLAHQLGYEREVIRIWFCN 76 (93)
Q Consensus 54 ~~~~~la~~~~l~~~~v~~WFqn 76 (93)
.....||..+|+++..+...|+.
T Consensus 94 ~sl~~lA~~~g~S~~~f~r~Fk~ 116 (133)
T 1u8b_A 94 VTLEALADQVAMSPFHLHRLFKA 116 (133)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHH
Confidence 34678999999999999988864
No 283
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=25.42 E-value=45 Score=21.13 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=29.7
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 40 LLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 40 ~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
.....|...+|-.. ....||...|++...+-.+|.++-.-
T Consensus 49 AA~~lf~e~G~~~~-S~~~IA~~AGVs~~tlY~hF~sKe~L 88 (273)
T 3c07_A 49 TAMRLFQERGYDRT-TMRAIAQEAGVSVGNAYYYFAGKEHL 88 (273)
T ss_dssp HHHHHHHHTCSTTC-CHHHHHHHHTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHhCCcccc-CHHHHHHHHCCCHHHHHHHcCCHHHH
Confidence 34445777777543 36678999999999999999887543
No 284
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=25.20 E-value=30 Score=17.61 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=19.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNK 77 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnr 77 (93)
...||..+|++...|..++.++
T Consensus 12 ~~diA~~aGVS~sTVSr~ln~~ 33 (67)
T 2l8n_A 12 MKDVALKAKVSTATVSRALMNP 33 (67)
T ss_dssp HHHHHHHTTCCHHHHHHTTTCC
T ss_pred HHHHHHHHCCCHHHHHHHHcCC
Confidence 5678999999999999998765
No 285
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=25.01 E-value=1.1e+02 Score=18.03 Aligned_cols=46 Identities=13% Similarity=0.233 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhh
Q psy14049 31 TSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~k 82 (93)
..+|..+.+.|....... ...+||..++++...|.+...+=+.|..
T Consensus 153 ~~Lt~rE~~vl~~l~~g~------s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 153 NQLTPRERDILKLIAQGL------PNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp GGSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 358888888887665432 2677899999999999998887777654
No 286
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=24.98 E-value=32 Score=21.42 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=32.4
Q ss_pred CCCCCHHH-HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 30 RTSFTPQA-LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 30 r~~~t~~q-~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
+...+.+. +..-...|....|-.. ....||..+|++...+-..|.|+-.
T Consensus 13 ~~~~~r~~Il~aA~~l~~~~G~~~~-s~~~IA~~aGvs~~tlY~hF~~K~~ 62 (237)
T 2hxo_A 13 QEPLSRERIVGAAVELLDTVGERGL-TFRALAERLATGPGAIYWHITGKAE 62 (237)
T ss_dssp ---CCHHHHHHHHHHHHHHTTTTTC-CHHHHHHHHTSCGGGGGGTCCCHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCcccC-CHHHHHHHHCCChHHHHHhcCCHHH
Confidence 34455544 3444555777776543 3667899999999999999988744
No 287
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=24.92 E-value=48 Score=19.59 Aligned_cols=42 Identities=14% Similarity=0.232 Sum_probs=30.0
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q psy14049 39 ELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQAL 81 (93)
Q Consensus 39 ~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~ 81 (93)
......|...+|-. .....||...|++...+-..|.++-.-.
T Consensus 22 ~aA~~lf~~~G~~~-~s~~~IA~~agvs~~t~Y~~F~sKe~L~ 63 (221)
T 3c2b_A 22 DQALRLLVEGGEKA-LTTSGLARAANCSKESLYKWFGDRDGLL 63 (221)
T ss_dssp HHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHhCCccc-CCHHHHHHHhCCCHHHHHHhCCCHHHHH
Confidence 33444466666644 2366789999999999999998875443
No 288
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=24.85 E-value=76 Score=15.97 Aligned_cols=41 Identities=24% Similarity=0.273 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhC--CChHHHHHHHH
Q psy14049 35 PQALELLNAHFE-----RNTHPSGTEITTLAHQLG--YEREVIRIWFC 75 (93)
Q Consensus 35 ~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~--l~~~~v~~WFq 75 (93)
..+...|...|. .+.+.+..+...+...+| ++...+...|.
T Consensus 5 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 52 (92)
T 2kn2_A 5 TDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIK 52 (92)
T ss_dssp CHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 344555666652 345677777777777776 45566666654
No 289
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=24.72 E-value=45 Score=18.76 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhCCC--hHHHHHHH
Q psy14049 32 SFTPQALELLNAHFE-----RNTHPSGTEITTLAHQLGYE--REVIRIWF 74 (93)
Q Consensus 32 ~~t~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~l~--~~~v~~WF 74 (93)
.+|.+|+..|...|. .+.+.+..+...+...+|.. ...+...|
T Consensus 3 ~lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~ 52 (148)
T 2lmt_A 3 ELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAELQDLI 52 (148)
T ss_dssp SCCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHHHTCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCCCchHHHHHHHH
Confidence 478889999998883 35667777777777777654 34444433
No 290
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=24.65 E-value=1.1e+02 Score=17.54 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHH
Q psy14049 30 RTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVI 70 (93)
Q Consensus 30 r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v 70 (93)
...++.+++..|...+.....+.......|+..+|+....|
T Consensus 4 ~~~lt~~e~~~l~~~~~~~~~~~~~~~~~l~~~tG~R~~E~ 44 (170)
T 1aih_A 4 LAFLYERDIYRLLAECDNSRNPDLGLIVRICLATGARWSEA 44 (170)
T ss_dssp CCCCCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHCCCHHHH
T ss_pred cccCCHHHHHHHHHHHhcccchhHHHHHHHHHHhCCcHHHH
Confidence 45789999999988887665566666777888888877654
No 291
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=24.50 E-value=38 Score=19.80 Aligned_cols=39 Identities=23% Similarity=0.299 Sum_probs=28.4
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 40 LLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 40 ~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
.....|...+|-. .....||...|++...+-.+|.++-.
T Consensus 22 aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~ 60 (220)
T 3lhq_A 22 VALRLFSQQGVSA-TSLAEIANAAGVTRGAIYWHFKNKSD 60 (220)
T ss_dssp HHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHcCccc-CCHHHHHHHhCCCceeehhhcCCHHH
Confidence 3444466667654 33667899999999999999988743
No 292
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=24.26 E-value=38 Score=19.95 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=30.1
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
+......|...+|-... ...||...|++...+-..|.++-.
T Consensus 17 l~aA~~lf~~~G~~~~t-i~~Ia~~agvs~~t~Y~~F~sK~~ 57 (216)
T 3f0c_A 17 INAAQKRFAHYGLCKTT-MNEIASDVGMGKASLYYYFPDKET 57 (216)
T ss_dssp HHHHHHHHHHHCSSSCC-HHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCCCcCC-HHHHHHHhCCCHHHHHHHcCCHHH
Confidence 34444557777775433 567899999999999999988744
No 293
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=24.21 E-value=83 Score=16.23 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCChHHHHHHHH
Q psy14049 55 EITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 55 ~~~~la~~~~l~~~~v~~WFq 75 (93)
...+||..+|++...|.....
T Consensus 33 t~~eLA~~Lgvs~~tV~~~L~ 53 (77)
T 1qgp_A 33 TAHDLSGKLGTPKKEINRVLY 53 (77)
T ss_dssp EHHHHHHHHCCCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 356789999999998877664
No 294
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=23.99 E-value=41 Score=19.46 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=28.4
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 41 LNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 41 L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
-...|...+|-.. ....||...|++...+-.+|.++..-
T Consensus 17 A~~l~~~~G~~~~-t~~~IA~~Agvs~~tly~~F~sK~~L 55 (194)
T 3dpj_A 17 ADELFYRQGFAQT-SFVDISAAVGISRGNFYYHFKTKDEI 55 (194)
T ss_dssp HHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHcCcccC-CHHHHHHHHCCChHHHHHHcCCHHHH
Confidence 3344666666543 35678999999999999999887543
No 295
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=23.81 E-value=35 Score=20.38 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=30.6
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q psy14049 39 ELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQAL 81 (93)
Q Consensus 39 ~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~ 81 (93)
..-...|...+|-.. ....||...|++...+-.+|.++-.-.
T Consensus 29 ~AA~~lf~e~G~~~~-s~~~IA~~AGVsk~tlY~~F~sKe~L~ 70 (207)
T 3bjb_A 29 EAAIELATEKELARV-QMHEVAKRAGVAIGTLYRYFPSKTHLF 70 (207)
T ss_dssp HHHHHHHHHSCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHcCcccC-CHHHHHHHhCCCHHHHHHHCCCHHHHH
Confidence 344445777777543 366789999999999999998875443
No 296
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=23.74 E-value=38 Score=19.98 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=29.1
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 41 LNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 41 L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
-...|...+|-.. ....||...|++...+-.+|.++-.-
T Consensus 23 A~~lf~~~G~~~~-s~~~IA~~agvs~~tlY~~F~sKe~L 61 (204)
T 2ibd_A 23 AATLFAERGLRAT-TVRDIADAAGILSGSLYHHFDSKESM 61 (204)
T ss_dssp HHHHHHHHCSTTC-CHHHHHHHTTSCHHHHHHHCSCHHHH
T ss_pred HHHHHHHcCchhc-CHHHHHHHhCCCchhHHHhcCCHHHH
Confidence 3444777777543 36678999999999999999887543
No 297
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=23.47 E-value=37 Score=19.44 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=28.7
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
+......|...+|-. .....||...|++...+-..|.++-.
T Consensus 16 l~aa~~l~~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~ 56 (191)
T 3on4_A 16 LAVAEALIQKDGYNA-FSFKDIATAINIKTASIHYHFPSKED 56 (191)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCcchhhhcCCCHHH
Confidence 333444466666543 23667899999999999999988754
No 298
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=23.45 E-value=28 Score=19.89 Aligned_cols=40 Identities=10% Similarity=0.063 Sum_probs=28.8
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 39 ELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 39 ~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
......|...+|-... ...||...|++...+-..|.++-.
T Consensus 19 ~aa~~l~~~~G~~~~t-v~~Ia~~agvs~~t~Y~~F~sK~~ 58 (177)
T 3kkc_A 19 NAFISLLQENDYSKIT-VQDVIGLANVGRSTFYSHYESKEV 58 (177)
T ss_dssp HHHHHHTTTSCTTTCC-HHHHHHHHCCCHHHHTTTCSSTHH
T ss_pred HHHHHHHHhCChhHhh-HHHHHHHhCCcHhhHHHHcCCHHH
Confidence 3444557777765433 567899999999999998877643
No 299
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=23.45 E-value=1e+02 Score=16.97 Aligned_cols=46 Identities=13% Similarity=0.272 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhCC--ChHHHHHHHH
Q psy14049 30 RTSFTPQALELLNAHFE-----RNTHPSGTEITTLAHQLGY--EREVIRIWFC 75 (93)
Q Consensus 30 r~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~l--~~~~v~~WFq 75 (93)
.+.++..++..|...|. .+.+.+..+...+...+|. +...+...|.
T Consensus 7 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 59 (153)
T 2ovk_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLK 59 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 46789999999999984 4568888888887777664 4556665554
No 300
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=23.42 E-value=32 Score=20.74 Aligned_cols=40 Identities=10% Similarity=0.023 Sum_probs=29.3
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 39 ELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 39 ~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
..-...|...+|-... ...||...|++...|-.+|.++-.
T Consensus 21 ~AA~~lf~~~G~~~~s-~~~IA~~AGvs~~tlY~~F~sKe~ 60 (208)
T 3v6g_A 21 EAAERVIARQGLGGLS-HRRVAAEANVPVGSTTYYFNDLDA 60 (208)
T ss_dssp HHHHHHHHHHCTTCCC-HHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhCcccCC-HHHHHHHhCCCchhHHHHcCCHHH
Confidence 3344457777775433 567899999999999999988743
No 301
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=23.32 E-value=42 Score=20.13 Aligned_cols=41 Identities=15% Similarity=0.291 Sum_probs=30.6
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
+..-...|...+|-.. ....||...|++...+-..|.++-.
T Consensus 15 l~aA~~lf~~~Gy~~t-s~~~IA~~AGvskgtlY~~F~sKe~ 55 (215)
T 1ui5_A 15 IGAAADLFDRRGYEST-TLSEIVAHAGVTKGALYFHFAAKED 55 (215)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCCchhhHhhCCCHHH
Confidence 4444555777777543 3667899999999999999988744
No 302
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=23.23 E-value=51 Score=19.61 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=21.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
...||...|++...+-.+|.++-.-
T Consensus 26 ~~~IA~~AGvskgtlY~hF~sKe~L 50 (208)
T 2g3b_A 26 VNDVAEVAGVSPGLLYYHFKDRIGL 50 (208)
T ss_dssp HHHHHHHHTSCHHHHHHHHCSHHHH
T ss_pred HHHHHHHhCCCHHHHHHHCCCHHHH
Confidence 6678999999999999999887543
No 303
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=23.11 E-value=94 Score=16.56 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=16.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHH
Q psy14049 55 EITTLAHQLGYEREVIRIWFCN 76 (93)
Q Consensus 55 ~~~~la~~~~l~~~~v~~WFqn 76 (93)
....||..+|+++..+..-|+.
T Consensus 22 ~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 22 DIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHH
Confidence 4667888889888888777754
No 304
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=23.05 E-value=50 Score=18.61 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
..+||..+|++...|..|..+++
T Consensus 56 Q~eLA~~lGis~~~Is~iE~G~~ 78 (120)
T 2o38_A 56 QAAAAARLGINQPKVSALRNYKL 78 (120)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999987654
No 305
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=22.97 E-value=41 Score=20.06 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=28.1
Q ss_pred HHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 42 NAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 42 ~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
...|...+|-. .....||...|++...|-.+|.++-.
T Consensus 19 ~~lf~~~G~~~-~s~~~IA~~aGvs~gtlY~yF~sKe~ 55 (209)
T 2gfn_A 19 LALIAREGISA-VTTRAVAEESGWSTGVLNHYFGSRHE 55 (209)
T ss_dssp HHHHHHHCGGG-CCHHHHHHHHSSCHHHHHHHTSSHHH
T ss_pred HHHHHHhCccc-CCHHHHHHHHCCCcchHHhcCCCHHH
Confidence 34477777654 33667899999999999999988744
No 306
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=22.90 E-value=36 Score=20.68 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=29.3
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 40 LLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 40 ~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
.....|...+|-. .....||...|++...+-.+|.++-.-
T Consensus 21 AA~~l~~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~L 60 (231)
T 2qib_A 21 VALDLFSRRSPDE-VSIDEIASAAGISRPLVYHYFPGKLSL 60 (231)
T ss_dssp HHHHHHHHSCGGG-CCHHHHHHHHTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHcCchh-cCHHHHHHHhCCCHHHHHHHCCCHHHH
Confidence 3444577777743 336678999999999999999887443
No 307
>4epz_A Transcription anti-terminator antagonist UPXZ; transcription regulation, antagonist of transcription anti- termination; HET: MSE; 1.68A {Bacteroides uniformis atcc 8492}
Probab=22.85 E-value=62 Score=19.77 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=17.9
Q ss_pred CCCCCHHHHHHHHHH--hhhCCCCC
Q psy14049 30 RTSFTPQALELLNAH--FERNTHPS 52 (93)
Q Consensus 30 r~~~t~~q~~~L~~~--f~~~~~p~ 52 (93)
...+|.+|.+.++.. +..||||-
T Consensus 133 ~~~Lt~eq~e~ieel~n~eeNpYP~ 157 (162)
T 4epz_A 133 ISDLTDEQKEIIEELRNFEENQYPW 157 (162)
T ss_dssp GGGCCHHHHHHHHHHHHHHHTSCGG
T ss_pred cccCCHHHHHHHHHHhccccCCCch
Confidence 456888998887766 78899984
No 308
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=22.82 E-value=1.3e+02 Score=17.78 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHhhh--CCCCCHHHHHHHHHHh
Q psy14049 31 TSFTPQALELLNAHFER--NTHPSGTEITTLAHQL 63 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~~--~~~p~~~~~~~la~~~ 63 (93)
..++.+++..|+.-|.. .+.|+...+-.+|-.+
T Consensus 16 ~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~L 50 (134)
T 3o48_A 16 EPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGL 50 (134)
T ss_dssp CCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 46789999999999954 7889988888877554
No 309
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=22.78 E-value=36 Score=20.05 Aligned_cols=40 Identities=13% Similarity=0.265 Sum_probs=29.6
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR 78 (93)
+..-...|...+|-... ...||...|++...+-..|.++-
T Consensus 16 l~aA~~lf~~~G~~~~s-~~~Ia~~Agvskgt~Y~yF~sKe 55 (197)
T 2f07_A 16 LQAAIEVISEKGLDKAS-ISDIVKKAGTAQGTFYLYFSSKN 55 (197)
T ss_dssp HHHHHHHHHHHCTTTCC-HHHHHHHHTSCHHHHHHHCSSST
T ss_pred HHHHHHHHHHhCcccCC-HHHHHHHhCCCchHHHHhCCCHH
Confidence 44445557777775433 56789999999999999998763
No 310
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=22.75 E-value=35 Score=19.55 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=29.3
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHH-HHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCN-KRQ 79 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqn-rR~ 79 (93)
+......|...+|-... ...||...|++...+-..|.| +-.
T Consensus 12 l~aa~~l~~~~G~~~~t-~~~Ia~~agvs~~t~Y~~F~~sK~~ 53 (191)
T 1sgm_A 12 LHTASRLSQLQGYHATG-LNQIVKESGAPKGSLYHFFPNGKEE 53 (191)
T ss_dssp HHHHHHHHHHHCTTTCC-HHHHHHHHCCCSCHHHHSTTTCHHH
T ss_pred HHHHHHHHHHcCccccC-HHHHHHHHCCCchhHHHHccccHHH
Confidence 34444556666665433 567899999999999999987 643
No 311
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=22.75 E-value=29 Score=20.22 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=28.6
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 40 LLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 40 ~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
.....|...+|-.. ....||...|++...+-..|.++-.
T Consensus 19 aA~~lf~~~G~~~~-s~~~Ia~~agvs~~t~Y~~F~sK~~ 57 (203)
T 3b81_A 19 KIWDIFIANGYENT-TLAFIINKLGISKGALYHYFSSKEE 57 (203)
T ss_dssp HHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHHTTCSSHHH
T ss_pred HHHHHHHHcCcccC-cHHHHHHHhCCCchhHHHHcCCHHH
Confidence 34444777776543 3667899999999999999987743
No 312
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=22.73 E-value=54 Score=19.27 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=26.5
Q ss_pred HHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 42 NAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 42 ~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
...|...+|-. .....||...|++...+-.+|.|+-.-
T Consensus 15 ~~lf~~~Gy~~-~s~~~IA~~AgvskgtlY~yF~sKe~L 52 (202)
T 2id6_A 15 VEVFGKKGYDR-ATTDEIAEKAGVAKGLIFHYFKNKEEL 52 (202)
T ss_dssp HHHHHHHHHHH-CCHHHHHHHHTCCTHHHHHHHSSHHHH
T ss_pred HHHHHHcCccc-CCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 33355444422 236678999999999999999887543
No 313
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=22.67 E-value=29 Score=20.57 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=29.5
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q psy14049 41 LNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQAL 81 (93)
Q Consensus 41 L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k~ 81 (93)
-...|...+|-... ...||...|++...|-.+|.++-.-.
T Consensus 18 A~~lf~~~G~~~~s-~~~IA~~aGvsk~tlY~~F~sKe~L~ 57 (203)
T 3cdl_A 18 AIAEFGDRGFEITS-MDRIAARAEVSKRTVYNHFPSKEELF 57 (203)
T ss_dssp HHHHHHHHCTTTCC-HHHHHHHTTSCHHHHHTTSSSHHHHH
T ss_pred HHHHHHHcCchhcC-HHHHHHHhCCCHHHHHHHCCCHHHHH
Confidence 33447777775433 66789999999999999998875443
No 314
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=22.67 E-value=1.3e+02 Score=18.18 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHh---hhCCCCCHHHHHHHHHHhCCChHHHHHHHH
Q psy14049 33 FTPQALELLNAHF---ERNTHPSGTEITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 33 ~t~~q~~~L~~~f---~~~~~p~~~~~~~la~~~~l~~~~v~~WFq 75 (93)
+|..|...|+-.. ....+|. ...+||..+|++...|..+.+
T Consensus 3 lt~~q~~il~~I~~~~~~~g~~~--s~~eia~~lgl~~~tv~~~l~ 46 (196)
T 3k2z_A 3 LTERQRKVLLFIEEFIEKNGYPP--SVREIARRFRITPRGALLHLI 46 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCC--CHHHHHHHHTSCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCC--CHHHHHHHcCCCcHHHHHHHH
Confidence 5677777776653 4455542 256789999999876666553
No 315
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=22.55 E-value=1.1e+02 Score=18.47 Aligned_cols=40 Identities=18% Similarity=0.385 Sum_probs=27.0
Q ss_pred CCHHHHHH---HHHHhhhCCCC-CHHHHHHHHHHhCCC-hHHHHHHHH
Q psy14049 33 FTPQALEL---LNAHFERNTHP-SGTEITTLAHQLGYE-REVIRIWFC 75 (93)
Q Consensus 33 ~t~~q~~~---L~~~f~~~~~p-~~~~~~~la~~~~l~-~~~v~~WFq 75 (93)
+|..|... |........++ + ..+||..+|++ ...|..|..
T Consensus 4 lt~~q~~i~~~i~~~~~~~g~~ps---~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 4 LTARQQEVFDLIRDHISQTGMPPT---RAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCC---HHHHHHHTTCSSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCcc---HHHHHHHhCCCChHHHHHHHH
Confidence 45555444 44444445553 4 45789999998 899999985
No 316
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=22.55 E-value=25 Score=20.78 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=30.3
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
+......|...+|-... ...||...|++...+-.+|.++-.
T Consensus 20 l~aA~~lf~~~G~~~~s-~~~Ia~~agvs~~t~Y~yF~sKe~ 60 (203)
T 3ccy_A 20 IERAAAMFARQGYSETS-IGDIARACECSKSRLYHYFDSKEA 60 (203)
T ss_dssp HHHHHHHHHHTCTTTSC-HHHHHHHTTCCGGGGTTTCSCHHH
T ss_pred HHHHHHHHHHcCcccCC-HHHHHHHhCCCcCeeeeeeCCHHH
Confidence 44445568888876543 667899999999999998887643
No 317
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=22.49 E-value=50 Score=19.38 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=30.3
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
+..-...|...+|-.. ....||...|++...+-..|.|+-.-
T Consensus 13 l~aA~~lf~~~G~~~t-s~~~IA~~aGvs~gtlY~~F~sKe~L 54 (197)
T 2gen_A 13 LQAALACFSEHGVDAT-TIEMIRDRSGASIGSLYHHFGNKERI 54 (197)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHCCCHHHHHHHTCSHHHH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHHCCChHHHHHHCCCHHHH
Confidence 3334455777777543 36678999999999999999887443
No 318
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=22.45 E-value=31 Score=20.98 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=30.7
Q ss_pred CCHHH-HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 33 FTPQA-LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 33 ~t~~q-~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
.+.+. +..-...|.... ......||..+|++...+-..|.|+-.-
T Consensus 11 ~~r~~Il~aA~~l~~~~G---~~s~~~IA~~aGvs~~tlY~hF~~K~~L 56 (213)
T 2g7g_A 11 LDRERIAEAALELVDRDG---DFRMPDLARHLNVQVSSIYHHAKGRAAV 56 (213)
T ss_dssp CCHHHHHHHHHHHHHHHS---SCCHHHHHHHTTSCHHHHHTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHcC---CCCHHHHHHHhCCCHhHHHHHcCCHHHH
Confidence 34433 333444465555 4457788999999999999999887543
No 319
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=22.25 E-value=34 Score=19.94 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=29.7
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
+......|...+|-.. ....||...|++...+-.+|.++-.
T Consensus 13 l~aA~~l~~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~sK~~ 53 (195)
T 2dg7_A 13 KRAALELYSEHGYDNV-TVTDIAERAGLTRRSYFRYFPDKRE 53 (195)
T ss_dssp HHHHHHHHHHSCGGGC-CHHHHHHHTTCCHHHHHHHCSSTTG
T ss_pred HHHHHHHHHhcCcccc-CHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 3444455777776543 3567899999999999999987643
No 320
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=22.11 E-value=29 Score=20.52 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=29.0
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 40 LLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 40 ~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
.-...|...+|-... ...||...|++...|-.+|.++-.
T Consensus 22 aA~~lf~~~G~~~~s-~~~IA~~agvsk~tlY~yF~sKe~ 60 (199)
T 3crj_A 22 ATYRALREHGYADLT-IQRIADEYGKSTAAVHYYYDTKDD 60 (199)
T ss_dssp HHHHHHHHHTTTTCC-HHHHHHHHTSCHHHHHTTCSSHHH
T ss_pred HHHHHHHHcCcccCC-HHHHHHHhCCChhHHhhhcCCHHH
Confidence 334447777776533 567899999999999999987744
No 321
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=22.08 E-value=58 Score=18.86 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=27.2
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 39 ELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 39 ~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
..-...|...+|- ......||...|++...|-..|.++-.
T Consensus 15 ~AA~~l~~~~G~~-~~t~~~IA~~agvs~~t~Y~~F~sK~~ 54 (195)
T 3frq_A 15 EAATVVLKRCGPI-EFTLSGVAKEVGLSRAALIQRFTNRDT 54 (195)
T ss_dssp HHHHHHHHHHHHH-HCCHHHHHHHHTCCHHHHHHHHCSHHH
T ss_pred HHHHHHHHhhCcc-cCCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 3334445555442 123667899999999999999988744
No 322
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=22.05 E-value=43 Score=20.79 Aligned_cols=38 Identities=5% Similarity=0.117 Sum_probs=28.3
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 41 LNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 41 L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
....|...+|-.. ....||...|++...|-..|.++-.
T Consensus 57 A~~lf~e~G~~~~-Ti~~IA~~AGvs~~t~Y~yF~sKe~ 94 (260)
T 2of7_A 57 TYGLIRQQGYEAT-TVEQIAERAEVSPSTVLRYFPTRED 94 (260)
T ss_dssp HHHHHHHHCSTTC-CHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHhCcccc-cHHHHHHHhCCChHHHHHHcCCHHH
Confidence 3444777776543 3667899999999999999987644
No 323
>2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis}
Probab=22.00 E-value=36 Score=19.01 Aligned_cols=10 Identities=20% Similarity=0.677 Sum_probs=8.4
Q ss_pred HHHHHHHHHH
Q psy14049 68 EVIRIWFCNK 77 (93)
Q Consensus 68 ~~v~~WFqnr 77 (93)
..|++|.||-
T Consensus 52 gdvkvwmqnl 61 (127)
T 2jpf_A 52 GDVKVWMQNL 61 (127)
T ss_dssp HHHHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 5689999985
No 324
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=21.99 E-value=1.2e+02 Score=17.37 Aligned_cols=48 Identities=17% Similarity=-0.017 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHh-------CCChHHHHHHHHHHH
Q psy14049 31 TSFTPQALELLNAHFERNTHPSGTEITTLAHQL-------GYEREVIRIWFCNKR 78 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~-------~l~~~~v~~WFqnrR 78 (93)
..++.+....+......++..+..+........ .++...|..|+...+
T Consensus 82 ~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~ 136 (159)
T 2k27_A 82 KVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKV 136 (159)
T ss_dssp CCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHh
Confidence 456777777777777767666655544422222 478899999986443
No 325
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=21.93 E-value=79 Score=19.09 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHH
Q psy14049 55 EITTLAHQLGYEREVIRIWFCN 76 (93)
Q Consensus 55 ~~~~la~~~~l~~~~v~~WFqn 76 (93)
...++|..+|++...+..|-..
T Consensus 50 Tv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 50 TQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHc
Confidence 4678999999999999999874
No 326
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=21.49 E-value=1.2e+02 Score=16.96 Aligned_cols=49 Identities=18% Similarity=0.357 Sum_probs=34.0
Q ss_pred CCCCCCCCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhCC--ChHHHHHHHH
Q psy14049 27 RKRRTSFTPQALELLNAHFE-----RNTHPSGTEITTLAHQLGY--EREVIRIWFC 75 (93)
Q Consensus 27 rr~r~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~l--~~~~v~~WFq 75 (93)
...+..++..++..|...|. .+.+.+..+...+...+|+ +...+...|.
T Consensus 16 ~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~ 71 (169)
T 3qrx_A 16 KKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIS 71 (169)
T ss_dssp ----CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCCCHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34467899999999999984 3567888888888888875 4455555553
No 327
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=21.48 E-value=27 Score=19.36 Aligned_cols=45 Identities=11% Similarity=0.070 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhCCChHHHHHHHH
Q psy14049 31 TSFTPQALELLNAHFE-----RNTHPSGTEITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~l~~~~v~~WFq 75 (93)
..++.++...+...|. .+.+.+..+...+...+|++...+..+|.
T Consensus 14 ~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~~ 63 (110)
T 1iq3_A 14 WRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWE 63 (110)
T ss_dssp CCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3456666777777773 35678888887777777888777776664
No 328
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=21.43 E-value=1.1e+02 Score=16.76 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=35.5
Q ss_pred CCCCCCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhCC--ChHHHHHHHH
Q psy14049 29 RRTSFTPQALELLNAHFE-----RNTHPSGTEITTLAHQLGY--EREVIRIWFC 75 (93)
Q Consensus 29 ~r~~~t~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~l--~~~~v~~WFq 75 (93)
....++..++..|...|. .+.+.+..+...+...+|+ +...+...|.
T Consensus 13 ~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~ 66 (161)
T 3fwb_A 13 LNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLID 66 (161)
T ss_dssp TTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 356789999999999985 3567888888888787774 5566666664
No 329
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=21.36 E-value=1.3e+02 Score=17.29 Aligned_cols=21 Identities=10% Similarity=0.613 Sum_probs=9.4
Q ss_pred HHHHHHHHHhCCChHHHHHHH
Q psy14049 54 TEITTLAHQLGYEREVIRIWF 74 (93)
Q Consensus 54 ~~~~~la~~~~l~~~~v~~WF 74 (93)
.+...+...++++...|+.+|
T Consensus 11 ~el~~~~~~~~~~~~el~~~f 31 (190)
T 2l2e_A 11 DQLQDLVRSTRFDKKELQQWY 31 (190)
T ss_dssp HHHHHHHHHHCSCSHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHH
Confidence 333334444444444555444
No 330
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=21.32 E-value=43 Score=19.79 Aligned_cols=41 Identities=12% Similarity=0.141 Sum_probs=29.7
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
+..-...|...+|-.. ....||...|++...|-.+|.++-.
T Consensus 15 l~AA~~lf~~~G~~~~-s~~~IA~~AGvs~gtlY~~F~sKe~ 55 (203)
T 2np5_A 15 AAALFDVAAESGLEGA-SVREVAKRAGVSIGAVQHHFSTKDE 55 (203)
T ss_dssp HHHHHHHHHHHCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhChhhc-cHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 3344455777776532 3667899999999999999988744
No 331
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=21.24 E-value=27 Score=20.18 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=29.7
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
+......|...+|-... ...||...|++...+-..|.++-.
T Consensus 16 l~aa~~lf~~~G~~~~t-~~~IA~~agvs~~tlY~~F~sK~~ 56 (197)
T 3rd3_A 16 LDTGYRIMAVKGFSGVG-LNEILQSAGVPKGSFYHYFKSKEQ 56 (197)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHTTTCSCHHH
T ss_pred HHHHHHHHHHCCcccCC-HHHHHHHhCCChhhHHHHcCCHHH
Confidence 34445557777765433 567899999999999999987744
No 332
>1mij_A Protein prospero; homeodomain, DNA-binding domain, prospero domain, 4-helix bundle, transcription; HET: MSE; 2.05A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1xpx_A
Probab=21.19 E-value=1.4e+02 Score=17.84 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCC---ChHHHHHHHHHHHHHhhHh
Q psy14049 31 TSFTPQALELLNAHFERNTHPSGTEITTLAHQLGY---EREVIRIWFCNKRQALKNT 84 (93)
Q Consensus 31 ~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l---~~~~v~~WFqnrR~k~kr~ 84 (93)
+.+|+..+..-+-.|--..||+.......---... .-.|+-.||-|=|.=+.-+
T Consensus 2 ~~Ltp~HLkKAKLMFfytRYPsS~~LK~yFpDvkFnr~~TsQLiKWFSNFREFyYIQ 58 (152)
T 1mij_A 2 STLTPMHLRKAKLMFFWVRYPSSAVLKMYFPDIKFNKNNTAQLVKWFSNFREFYYIQ 58 (152)
T ss_dssp CCCCHHHHHHHHHHTTTCSSCCHHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHhhhhheeeecCCcHHHHHHhCCchhhhhhhHHHHHHHHHhhHHHHHHH
Confidence 34677777777777888899997765443222222 2467889999988655443
No 333
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=21.09 E-value=45 Score=19.07 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=27.6
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 41 LNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 41 L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
....|...+|-. .....||...|++...+-.+|.++-.
T Consensus 17 a~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~ 54 (194)
T 2g7s_A 17 ARTLIIRGGYNS-FSYADISQVVGIRNASIHHHFPSKSD 54 (194)
T ss_dssp HHHHHHHHCGGG-CCHHHHHHHHCCCHHHHHHHCSSHHH
T ss_pred HHHHHHHcCccc-CCHHHHHHHhCCCchHHHHHcCCHHH
Confidence 334466666643 23677899999999999999988743
No 334
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=21.02 E-value=31 Score=20.37 Aligned_cols=38 Identities=16% Similarity=0.395 Sum_probs=28.1
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 41 LNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 41 L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
-...|...+|-... ...||...|++...+-.+|.++-.
T Consensus 21 A~~lf~~~Gy~~ts-~~~IA~~agvs~gtlY~yF~sKe~ 58 (205)
T 1rkt_A 21 AKTVFKRKGFELTT-MKDVVEESGFSRGGVYLYFSSTEE 58 (205)
T ss_dssp HHHHHHHHCSTTCC-HHHHHHHHTSCHHHHHTTCSCHHH
T ss_pred HHHHHHHcCcccCC-HHHHHHHHCCCcchhhhhCCCHHH
Confidence 33447777775433 667899999999999999987743
No 335
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=20.94 E-value=44 Score=19.47 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=21.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 55 EITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 55 ~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
....||...|++...+-..|.++-.
T Consensus 36 t~~~Ia~~agvs~~t~Y~~F~sK~~ 60 (215)
T 3e7q_A 36 SVRKICAEAGVSVGLINHHYDGKDA 60 (215)
T ss_dssp CHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred CHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 3567899999999999999988744
No 336
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=20.85 E-value=33 Score=20.49 Aligned_cols=41 Identities=22% Similarity=0.373 Sum_probs=30.6
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 38 LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 38 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
+..-...|...+|-.. ....||...|++...|-..|.|+-.
T Consensus 17 l~aA~~lf~~~G~~~~-s~~~IA~~aGvskgtlY~~F~sKe~ 57 (219)
T 2w53_A 17 LDAAEACFHEHGVART-TLEMIGARAGYTRGAVYWHFKNKSE 57 (219)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCCchHHhhcCCCHHH
Confidence 4445555777777543 3677899999999999999988744
No 337
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=20.76 E-value=45 Score=20.91 Aligned_cols=50 Identities=10% Similarity=0.160 Sum_probs=34.1
Q ss_pred CCCCCHHH-HHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 30 RTSFTPQA-LELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 30 r~~~t~~q-~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
+...+.+. +..-...|....|-.. ....||..+|++...+-..|.|+-.-
T Consensus 16 r~~~tr~~Il~AA~~l~~e~G~~~~-S~~~IA~~aGvs~~tlY~hF~sK~~L 66 (243)
T 2g7l_A 16 KPALSRRWIVDTAVALMRAEGLEKV-TMRRLAQELDTGPASLYVYVANTAEL 66 (243)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCSSSC-CHHHHHHHTTSCHHHHTTTCCSHHHH
T ss_pred CcccCHHHHHHHHHHHHHhcCchhc-CHHHHHHHHCCChhHHHHHcCCHHHH
Confidence 34455544 3344555667776443 36678999999999999999887543
No 338
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=20.67 E-value=46 Score=19.30 Aligned_cols=36 Identities=6% Similarity=0.139 Sum_probs=26.7
Q ss_pred HHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 43 AHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 43 ~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
..|...+|-.. ....||...|++...+-..|.++-.
T Consensus 28 ~lf~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~ 63 (208)
T 3cwr_A 28 RLLSSGGAAAM-TMEGVASEAGIAKKTLYRFASGRAD 63 (208)
T ss_dssp HHHHHHCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHcCHHhc-cHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 34666665432 3567899999999999999988744
No 339
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=20.63 E-value=1.1e+02 Score=16.45 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHhCC--ChHHHHHHHH
Q psy14049 33 FTPQALELLNAHFE-----RNTHPSGTEITTLAHQLGY--EREVIRIWFC 75 (93)
Q Consensus 33 ~t~~q~~~L~~~f~-----~~~~p~~~~~~~la~~~~l--~~~~v~~WFq 75 (93)
++..++..+...|. .+.+.+..+...+...+|+ +...+...|.
T Consensus 2 l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~ 51 (149)
T 2mys_C 2 FSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILG 51 (149)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 56777888888873 3567777777777776664 4556666664
No 340
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=20.40 E-value=1.8e+02 Score=18.76 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHhC---CChHHHHHHHHHH
Q psy14049 48 NTHPSGTEITTLAHQLG---YEREVIRIWFCNK 77 (93)
Q Consensus 48 ~~~p~~~~~~~la~~~~---l~~~~v~~WFqnr 77 (93)
...........|+..+| ++...|..|++.-
T Consensus 21 ~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~ 53 (345)
T 3hot_A 21 LKKTAAESHRMLVEAFGEQVPTVKTCERWFQRF 53 (345)
T ss_dssp TTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 44544555566778888 9999999999743
No 341
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=20.40 E-value=64 Score=19.72 Aligned_cols=41 Identities=17% Similarity=0.346 Sum_probs=27.9
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 39 ELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 39 ~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
..-...|...+|-. .....||...|++...|-..|.++-.-
T Consensus 25 ~AA~~lf~~~G~~~-~t~~~IA~~aGvs~~tlY~~F~sKe~L 65 (251)
T 3npi_A 25 DIALSLFSELGFSD-AKLEAIAKKSGMSKRMIHYHFGDKRGL 65 (251)
T ss_dssp HHHHHHHHHHHHHH-CCHHHHHHHHCCCHHHHHHHHCSHHHH
T ss_pred HHHHHHHHHcCccc-cCHHHHHHHHCCCHHHHHHHcCCHHHH
Confidence 33344455554422 235678999999999999999887543
No 342
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=20.33 E-value=46 Score=19.83 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=26.0
Q ss_pred HHHHHHH---hhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 38 LELLNAH---FERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 38 ~~~L~~~---f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
...|+.. |...+|-.. ....||...|++...|-.+|.|+-.-
T Consensus 27 ~~Il~aA~~lf~e~G~~~~-s~~~IA~~aGvskgtlY~yF~sKe~L 71 (214)
T 2oer_A 27 ASILEAAVQVLASEGAQRF-TTARVAERAGVSIGSLYQYFPNKAAI 71 (214)
T ss_dssp HHHHHHHHHC------CCC-CHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHHhhCcccc-cHHHHHHHhCCCCchHHHhCCCHHHH
Confidence 3344444 666776543 36678999999999999999887443
No 343
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=20.27 E-value=39 Score=18.59 Aligned_cols=10 Identities=40% Similarity=0.986 Sum_probs=7.5
Q ss_pred HHHHHHHHHH
Q psy14049 70 IRIWFCNKRQ 79 (93)
Q Consensus 70 v~~WFqnrR~ 79 (93)
|=.||.||-+
T Consensus 19 iwlwfrnrpa 28 (117)
T 1w8x_P 19 IWLWFRNRPA 28 (117)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHccChH
Confidence 5679998854
No 344
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=20.27 E-value=34 Score=19.74 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy14049 37 ALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79 (93)
Q Consensus 37 q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~ 79 (93)
-+......|...+|-.. ....||...|++...+-..|.++-.
T Consensus 16 il~aa~~lf~~~G~~~~-tv~~Ia~~agvs~~t~Y~~F~sK~~ 57 (196)
T 3he0_A 16 ILAAAEQLIAESGFQGL-SMQKLANEAGVAAGTIYRYFSDKEH 57 (196)
T ss_dssp HHHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHhCcccC-CHHHHHHHhCCCcchHHHhcCCHHH
Confidence 34455555777777543 3667899999999999999987744
No 345
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=20.22 E-value=94 Score=17.25 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHH
Q psy14049 32 SFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFC 75 (93)
Q Consensus 32 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFq 75 (93)
.++..+...|...+.............||..++++...|..-.+
T Consensus 10 ~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~ 53 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVS 53 (139)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHH
Confidence 46777777777665421111112345789999999988776554
No 346
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=20.20 E-value=19 Score=21.08 Aligned_cols=23 Identities=26% Similarity=0.777 Sum_probs=18.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q psy14049 56 ITTLAHQLGYEREVIRIWFCNKR 78 (93)
Q Consensus 56 ~~~la~~~~l~~~~v~~WFqnrR 78 (93)
...+|..+|++..+++.|+-..|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 56789999999999999985433
No 347
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=20.16 E-value=29 Score=20.54 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=28.6
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy14049 41 LNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQA 80 (93)
Q Consensus 41 L~~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WFqnrR~k 80 (93)
-...|...+|-... ...||...|++...+-.+|.++-.-
T Consensus 20 A~~lf~~~G~~~~s-~~~IA~~agvs~~t~Y~~F~sK~~L 58 (212)
T 2ras_A 20 AQAIVEERGGAGLT-LSELAARAGISQANLSRYFETREDL 58 (212)
T ss_dssp HHHHHHHHTSSCCC-HHHHHHHHTSCHHHHTTTCSSHHHH
T ss_pred HHHHHHHhCcccCc-HHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 33446667765533 5678999999999999999887543
Done!