RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14049
(93 letters)
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 58.7 bits (142), Expect = 7e-14
Identities = 16/71 (22%), Positives = 28/71 (39%)
Query: 20 GMEPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQ 79
+ RK+R +T L F N + + +A L ++IWF N+R
Sbjct: 7 WLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRM 66
Query: 80 ALKNTVRMMSK 90
+K + +K
Sbjct: 67 KMKKINKDRAK 77
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 57.2 bits (138), Expect = 2e-13
Identities = 20/64 (31%), Positives = 24/64 (37%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84
K + RT + L L + N P L G VIR+WF NKR K
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61
Query: 85 VRMM 88
MM
Sbjct: 62 SIMM 65
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 55.4 bits (133), Expect = 1e-12
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 23 PSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
P+KKRKRR FT L F + + S E LA + ++IWF N R K
Sbjct: 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTK 65
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 54.9 bits (132), Expect = 2e-12
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
K+R+ RT+F+ L+ L FER +P LA + I++WF N+R L+
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLR 58
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 53.3 bits (128), Expect = 5e-12
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 30 RTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
++S +PQA L F R + E +A + G +R+WF NKR K
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 53.2 bits (128), Expect = 6e-12
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 26 KRKRRTSFTPQALELLNAHFE---RNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
+ +R A ++ + + +P+ E +A Q + WF N R+ +
Sbjct: 2 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRIL 61
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 52.6 bits (126), Expect = 1e-11
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 27 RKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
RK+R ++ L L + N + + ++ I IWF N+R K
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEK 57
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 53.1 bits (127), Expect = 2e-11
Identities = 18/64 (28%), Positives = 25/64 (39%)
Query: 23 PSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
RT+FT + L L F N + S +A L ++IWF N+R K
Sbjct: 24 LGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQK 83
Query: 83 NTVR 86
R
Sbjct: 84 KRER 87
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 51.5 bits (123), Expect = 3e-11
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 27 RKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
R++RT FT Q L+ L A F+RN +P + +A +R+WF N+R +
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWR 57
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 51.7 bits (124), Expect = 3e-11
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 27 RKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTVR 86
++ RTSFT + +E L FER +P LA ++ I++WF N+R + +
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 61
Query: 87 M 87
+
Sbjct: 62 L 62
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 51.5 bits (123), Expect = 5e-11
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 26 KRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTV 85
+RKRR F+ + L F++ + S E LA + ++IWF N R +K
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61
Query: 86 R 86
+
Sbjct: 62 K 62
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 51.5 bits (123), Expect = 5e-11
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 27 RKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
R+ RT+FT + L HF + + + + L+ +L ++IWF N+R+ K
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHK 57
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 50.6 bits (121), Expect = 6e-11
Identities = 13/56 (23%), Positives = 21/56 (37%)
Query: 27 RKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
+ + F+ L FE + S E LA L ++ WF N+R +
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWR 56
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 51.2 bits (122), Expect = 7e-11
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 20 GMEPSKKRKRRTSFTPQALELLNAHFERNTH----PSGTEITTLAHQLGYEREVIRIWFC 75
++ RT FT + E + A ER + + G R+V++IW
Sbjct: 11 SSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMH 70
Query: 76 NKRQALK 82
N + +
Sbjct: 71 NNKNSGP 77
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 50.2 bits (120), Expect = 1e-10
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 30 RTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
R ++T L F N + + +AH L I+IWF N+R K
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWK 53
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 49.9 bits (119), Expect = 1e-10
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 28 KRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
KRRT+ + A + L HF ++ PS EI +A +L E+EV+R+WFCN+RQ K
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREK 55
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 49.5 bits (118), Expect = 2e-10
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 27 RKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
RK RT FT L L F + + S E + L ++IWF N+R K
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAK 56
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 48.7 bits (116), Expect = 3e-10
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 28 KRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKR 78
+ RT+F+ + L L F N + + L+ +LG I+IWF N R
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNAR 51
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 48.8 bits (116), Expect = 4e-10
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 25 KKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84
++++RTS + L F + PS +IT +A+QLG E++V+R+WFCN+RQ K +
Sbjct: 7 ARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRS 66
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 47.9 bits (114), Expect = 8e-10
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 30 RTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKR 78
R FT L+A F+ N PS T++ QLG E + +F N R
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 48.0 bits (114), Expect = 8e-10
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 28 KRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
+ RT+FT L L F + + S LA QL I++WF N+R K
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDK 55
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 47.4 bits (112), Expect = 3e-09
Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 15/78 (19%)
Query: 27 RKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYERE---------------VIR 71
R R ++ + L ++ ++F N +P + +A+ + +
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVY 60
Query: 72 IWFCNKRQALKNTVRMMS 89
WF N+R+ +K + +
Sbjct: 61 NWFANRRKEIKRRANIAA 78
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 46.5 bits (110), Expect = 4e-09
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 27 RKRRTSFTPQALELLNAHFE---RNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKN 83
R++R +F QA E+LN +F N +PS LA + G + WF NKR K
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 61
Query: 84 TVRMMSK 90
+ +
Sbjct: 62 NIGKFQE 68
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 46.6 bits (110), Expect = 4e-09
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 20 GMEPSKKRKRRTSFTPQALELLNAHFER-NTHPSGTEITTLAHQLGYEREVIRIWFCNKR 78
G S + RT + +AL +L + +P I TL+ QL + I +F N+R
Sbjct: 1 GSSGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQR 60
Query: 79 QALK 82
+K
Sbjct: 61 YHVK 64
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 45.1 bits (107), Expect = 1e-08
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 28 KRRTSFTPQALELLNAHFERNTH-PSGTEITTLAHQLGYEREVIRIWFCNKRQ 79
K + + L F T P + L+ QL + I+ WF ++R
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRN 55
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 44.3 bits (105), Expect = 2e-08
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 34 TPQALELLNAHFERNTH-PSGTEITTLAHQLGYEREVIRIWFCNKRQALKNT 84
T Q +L F T P + L+ QL ++ I+ WF +R K +
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 52
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 44.8 bits (106), Expect = 2e-08
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 29 RRTSFTPQALELLNAHFERNTH---PSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
R FT + + +L + F +N + L R I+ W N+R+ K
Sbjct: 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 57
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 44.3 bits (104), Expect = 3e-08
Identities = 14/61 (22%), Positives = 25/61 (40%)
Query: 23 PSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
P ++ T + L +L A F ++ + E+ L Q R I WF K+++
Sbjct: 1 PDFTPQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKA 60
Query: 83 N 83
Sbjct: 61 L 61
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 41.1 bits (96), Expect = 4e-07
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 29 RRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALK 82
+RTS L F N P+ +IT +A QL E+EVIR+WF N+RQ K
Sbjct: 1 KRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEK 54
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 41.1 bits (96), Expect = 5e-07
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 27 RKRRTSFTPQALELLNAHFERNTH-PSGTEITTLAHQLGYEREVIRIWFCNKRQALKNTV 85
+ + T +E+L +F + P T + +A + G E + WF + + +
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61
Query: 86 RMMSK 90
+ S+
Sbjct: 62 GLPSE 66
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 38.2 bits (88), Expect = 7e-06
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 21/74 (28%)
Query: 30 RTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREV-------------------- 69
R + P + ++L +ER +PS E TL + +
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 70 -IRIWFCNKRQALK 82
+ WF N+R+
Sbjct: 61 RVYNWFANRRKEEA 74
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 37.8 bits (87), Expect = 1e-05
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 24 SKKRKRRTSFTPQALELLNAHFERNTHPSGTEITTLAHQLGYEREVIRIWFCNKRQALKN 83
S +R T + L +L + F + + L G R I WF + R ALK+
Sbjct: 3 SGSSGKR--KTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKH 60
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 24.4 bits (52), Expect = 2.9
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 1 MSTVCFRYKSGQNHLTEFI 19
+ VCFR K G + L E +
Sbjct: 406 LGLVCFRLK-GSDGLNEAL 423
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.131 0.391
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 329,698
Number of extensions: 12442
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 34
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)