Query psy14051
Match_columns 256
No_of_seqs 137 out of 223
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 18:21:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14051.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14051hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xsd_C POU domain, class 3, tr 100.0 6.5E-40 2.2E-44 273.5 4.7 131 2-166 7-137 (164)
2 1au7_A Protein PIT-1, GHF-1; c 100.0 1.6E-39 5.3E-44 266.1 4.5 125 6-166 1-125 (146)
3 3l1p_A POU domain, class 5, tr 100.0 3.4E-39 1.2E-43 265.8 5.5 127 6-166 8-134 (155)
4 3d1n_I POU domain, class 6, tr 100.0 3.8E-39 1.3E-43 263.3 5.6 128 5-166 1-131 (151)
5 1e3o_C Octamer-binding transcr 100.0 3.3E-36 1.1E-40 248.8 5.7 131 2-166 1-139 (160)
6 1ic8_A Hepatocyte nuclear fact 99.2 2.3E-12 7.7E-17 111.1 1.2 117 8-166 26-153 (194)
7 2h8r_A Hepatocyte nuclear fact 98.7 5.2E-09 1.8E-13 92.6 4.2 115 10-166 29-180 (221)
8 2d5v_A Hepatocyte nuclear fact 98.0 1.1E-06 3.7E-11 71.9 1.0 126 2-166 1-135 (164)
9 2da2_A Alpha-fetoprotein enhan 97.8 2.9E-06 1E-10 60.3 0.6 43 124-166 3-45 (70)
10 2cra_A Homeobox protein HOX-B1 97.8 3.6E-06 1.2E-10 60.2 0.6 42 125-166 4-45 (70)
11 2da1_A Alpha-fetoprotein enhan 97.8 3.6E-06 1.2E-10 59.9 0.3 42 125-166 4-45 (70)
12 1yz8_P Pituitary homeobox 2; D 97.8 6.6E-06 2.2E-10 58.5 1.3 40 127-166 2-41 (68)
13 2djn_A Homeobox protein DLX-5; 97.7 6.1E-06 2.1E-10 59.0 0.9 42 125-166 4-45 (70)
14 2dmu_A Homeobox protein goosec 97.7 4.3E-06 1.5E-10 59.7 0.0 42 125-166 4-45 (70)
15 2cue_A Paired box protein PAX6 97.7 6.1E-06 2.1E-10 60.5 0.9 42 125-166 4-45 (80)
16 2dmq_A LIM/homeobox protein LH 97.7 7.3E-06 2.5E-10 59.7 0.6 42 125-166 4-45 (80)
17 2l7z_A Homeobox protein HOX-A1 97.7 6.5E-06 2.2E-10 59.5 0.2 44 123-166 2-45 (73)
18 2dms_A Homeobox protein OTX2; 97.7 7.9E-06 2.7E-10 59.7 0.6 42 125-166 4-45 (80)
19 1nk2_P Homeobox protein VND; h 97.7 8.5E-06 2.9E-10 59.3 0.7 42 125-166 6-47 (77)
20 2da3_A Alpha-fetoprotein enhan 97.7 6.6E-06 2.2E-10 59.6 -0.0 41 126-166 15-55 (80)
21 1bw5_A ISL-1HD, insulin gene e 97.7 6.6E-06 2.3E-10 58.0 -0.0 40 127-166 2-41 (66)
22 2e1o_A Homeobox protein PRH; D 97.6 8.9E-06 3.1E-10 58.1 0.6 43 124-166 3-45 (70)
23 1ig7_A Homeotic protein MSX-1; 97.6 8.1E-06 2.8E-10 56.0 0.4 38 129-166 1-38 (58)
24 2vi6_A Homeobox protein nanog; 97.6 5.2E-06 1.8E-10 58.0 -0.7 40 127-166 2-41 (62)
25 2hdd_A Protein (engrailed home 97.6 5.6E-06 1.9E-10 57.6 -0.6 40 127-166 2-41 (61)
26 2kt0_A Nanog, homeobox protein 97.6 1.3E-05 4.3E-10 58.9 0.7 41 126-166 20-60 (84)
27 3rkq_A Homeobox protein NKX-2. 97.6 9.6E-06 3.3E-10 55.1 0.0 39 128-166 2-40 (58)
28 2da6_A Hepatocyte nuclear fact 97.6 8.5E-06 2.9E-10 64.6 -0.3 43 124-166 2-44 (102)
29 1b72_A Protein (homeobox prote 97.6 4.6E-06 1.6E-10 63.3 -1.9 61 104-166 12-72 (97)
30 1akh_A Protein (mating-type pr 97.6 6.8E-06 2.3E-10 56.9 -0.8 40 127-166 4-43 (61)
31 3a01_A Homeodomain-containing 97.6 2.2E-05 7.4E-10 59.5 1.8 43 124-166 13-55 (93)
32 1ftt_A TTF-1 HD, thyroid trans 97.6 1E-05 3.5E-10 57.6 -0.1 39 128-166 2-40 (68)
33 2m0c_A Homeobox protein arista 97.5 1.4E-05 4.6E-10 57.2 0.2 43 124-166 5-47 (75)
34 2dmt_A Homeobox protein BARH-l 97.5 1.6E-05 5.5E-10 58.2 0.5 41 126-166 15-55 (80)
35 2h1k_A IPF-1, pancreatic and d 97.5 1.2E-05 3.9E-10 56.5 -0.3 40 127-166 2-41 (63)
36 1jgg_A Segmentation protein EV 97.5 1.3E-05 4.4E-10 55.6 -0.3 38 129-166 2-39 (60)
37 2k40_A Homeobox expressed in E 97.5 1.5E-05 5.2E-10 56.3 0.1 39 128-166 1-39 (67)
38 2cuf_A FLJ21616 protein; homeo 97.5 1.3E-05 4.3E-10 60.6 -0.5 42 125-166 4-45 (95)
39 1ahd_P Antennapedia protein mu 97.5 1.6E-05 5.4E-10 56.8 0.0 39 128-166 2-40 (68)
40 1b8i_A Ultrabithorax, protein 97.5 1.4E-05 4.8E-10 58.9 -0.5 43 124-166 16-58 (81)
41 1fjl_A Paired protein; DNA-bin 97.4 1.7E-05 5.8E-10 58.1 -0.4 42 125-166 15-56 (81)
42 2r5y_A Homeotic protein sex co 97.4 2.7E-05 9.2E-10 57.9 0.1 42 125-166 25-66 (88)
43 1zq3_P PRD-4, homeotic bicoid 97.4 2.8E-05 9.7E-10 55.3 0.1 39 128-166 2-40 (68)
44 1wh5_A ZF-HD homeobox family p 97.3 4E-05 1.4E-09 56.9 0.7 41 126-166 15-59 (80)
45 1puf_A HOX-1.7, homeobox prote 97.3 4.3E-05 1.5E-09 55.6 0.8 41 126-166 11-51 (77)
46 2da4_A Hypothetical protein DK 97.3 1.6E-05 5.4E-10 58.1 -1.9 41 126-166 6-50 (80)
47 1lfb_A Liver transcription fac 97.3 3.7E-05 1.3E-09 59.7 -0.1 43 124-166 5-47 (99)
48 1x2n_A Homeobox protein pknox1 97.2 6.2E-05 2.1E-09 53.9 0.1 42 125-166 4-48 (73)
49 1wh7_A ZF-HD homeobox family p 97.2 8E-05 2.7E-09 55.6 0.6 41 125-166 14-59 (80)
50 1du6_A PBX1, homeobox protein 97.1 7.4E-05 2.5E-09 52.2 0.1 40 127-166 2-44 (64)
51 1mnm_C Protein (MAT alpha-2 tr 97.1 7.7E-05 2.6E-09 55.3 -0.3 42 125-166 24-68 (87)
52 2dmn_A Homeobox protein TGIF2L 97.0 0.00012 4.2E-09 54.3 0.2 43 124-166 3-48 (83)
53 1puf_B PRE-B-cell leukemia tra 97.0 0.00013 4.5E-09 52.3 0.2 39 128-166 1-42 (73)
54 2hi3_A Homeodomain-only protei 96.8 0.00016 5.5E-09 52.0 -0.2 38 129-166 3-41 (73)
55 1wi3_A DNA-binding protein SAT 96.8 0.00027 9.3E-09 53.4 0.9 42 125-166 4-46 (71)
56 1b72_B Protein (PBX1); homeodo 96.8 0.00018 6.3E-09 52.9 -0.3 39 128-166 1-42 (87)
57 1uhs_A HOP, homeodomain only p 96.7 0.00019 6.5E-09 51.4 -0.4 38 129-166 2-40 (72)
58 3nar_A ZHX1, zinc fingers and 96.7 0.00019 6.6E-09 54.3 -0.6 41 126-166 23-63 (96)
59 1le8_B Mating-type protein alp 96.5 0.00032 1.1E-08 51.8 -0.6 39 128-166 2-43 (83)
60 2ly9_A Zinc fingers and homeob 96.5 0.00038 1.3E-08 49.8 -0.3 39 128-166 6-44 (74)
61 3a02_A Homeobox protein arista 96.4 0.00033 1.1E-08 48.4 -0.8 36 131-166 2-37 (60)
62 2dn0_A Zinc fingers and homeob 96.4 0.00055 1.9E-08 49.5 0.2 38 129-166 9-46 (76)
63 2da5_A Zinc fingers and homeob 96.2 0.00082 2.8E-08 48.7 0.0 38 129-166 8-45 (75)
64 1k61_A Mating-type protein alp 96.2 0.00072 2.5E-08 46.6 -0.3 36 131-166 1-39 (60)
65 3a03_A T-cell leukemia homeobo 95.9 0.00073 2.5E-08 46.3 -1.1 34 133-166 2-35 (56)
66 2da7_A Zinc finger homeobox pr 95.9 0.00089 3E-08 50.5 -1.0 29 138-166 15-43 (71)
67 2ecc_A Homeobox and leucine zi 95.6 0.0019 6.5E-08 48.5 -0.0 36 131-166 6-41 (76)
68 4ghj_A Probable transcriptiona 95.4 0.02 6.7E-07 43.9 4.8 37 8-50 32-68 (101)
69 3eus_A DNA-binding protein; st 95.3 0.019 6.6E-07 41.1 4.3 40 5-50 7-46 (86)
70 2ewt_A BLDD, putative DNA-bind 94.9 0.065 2.2E-06 35.9 5.9 40 7-50 3-42 (71)
71 2ef8_A C.ECOT38IS, putative tr 94.9 0.11 3.7E-06 35.8 7.2 39 6-50 4-42 (84)
72 2wiu_B HTH-type transcriptiona 94.8 0.023 8E-07 39.6 3.5 39 6-50 6-44 (88)
73 3kz3_A Repressor protein CI; f 94.8 0.043 1.5E-06 38.4 4.8 39 6-50 6-44 (80)
74 1y7y_A C.AHDI; helix-turn-heli 94.7 0.047 1.6E-06 36.7 4.6 38 7-50 8-45 (74)
75 2cqx_A LAG1 longevity assuranc 94.5 0.005 1.7E-07 44.7 -0.6 36 131-166 11-47 (72)
76 3f6w_A XRE-family like protein 94.3 0.08 2.7E-06 36.7 5.3 37 8-50 10-46 (83)
77 2dmp_A Zinc fingers and homeob 94.2 0.0067 2.3E-07 45.5 -0.5 32 135-166 20-51 (89)
78 3s8q_A R-M controller protein; 93.7 0.088 3E-06 36.5 4.5 37 8-50 7-43 (82)
79 2b5a_A C.BCLI; helix-turn-heli 93.5 0.11 3.7E-06 35.2 4.7 36 9-50 7-42 (77)
80 3qq6_A HTH-type transcriptiona 93.3 0.098 3.3E-06 36.9 4.3 33 12-50 10-42 (78)
81 2kpj_A SOS-response transcript 93.1 0.19 6.5E-06 36.1 5.7 37 8-50 5-41 (94)
82 3b7h_A Prophage LP1 protein 11 93.0 0.16 5.5E-06 34.4 5.0 34 11-50 6-39 (78)
83 3g5g_A Regulatory protein; tra 93.0 0.12 4.3E-06 38.4 4.6 37 8-50 24-60 (99)
84 1lmb_3 Protein (lambda repress 92.8 0.16 5.6E-06 35.8 4.9 37 8-50 13-49 (92)
85 1adr_A P22 C2 repressor; trans 92.6 0.13 4.5E-06 34.6 3.9 34 11-50 4-37 (76)
86 1jhg_A Trp operon repressor; c 92.4 0.18 6.3E-06 39.6 5.0 40 5-50 36-77 (101)
87 1x57_A Endothelial differentia 92.3 0.21 7.1E-06 35.5 4.8 34 11-50 12-45 (91)
88 1zug_A Phage 434 CRO protein; 92.0 0.11 3.8E-06 34.5 2.9 33 12-50 3-35 (71)
89 3vk0_A NHTF, transcriptional r 91.6 0.33 1.1E-05 36.2 5.5 36 9-50 18-53 (114)
90 2e19_A Transcription factor 8; 91.5 0.029 9.9E-07 39.9 -0.5 31 136-166 11-41 (64)
91 2a6c_A Helix-turn-helix motif; 91.4 0.41 1.4E-05 33.7 5.6 39 6-50 12-50 (83)
92 2r1j_L Repressor protein C2; p 91.3 0.21 7.1E-06 32.7 3.7 34 11-50 4-37 (68)
93 3fmy_A HTH-type transcriptiona 91.1 0.13 4.6E-06 35.8 2.7 31 14-50 13-43 (73)
94 3op9_A PLI0006 protein; struct 91.0 0.24 8.2E-06 36.6 4.2 33 12-50 9-41 (114)
95 1r69_A Repressor protein CI; g 91.0 0.16 5.6E-06 33.5 2.9 32 13-50 2-33 (69)
96 2wus_R RODZ, putative uncharac 90.8 0.19 6.4E-06 38.8 3.6 37 8-50 3-39 (112)
97 2o38_A Hypothetical protein; a 90.7 0.27 9.4E-06 38.1 4.4 35 10-50 38-72 (120)
98 2ppx_A AGR_C_3184P, uncharacte 90.5 0.15 5.2E-06 37.2 2.6 33 12-50 30-62 (99)
99 3ivp_A Putative transposon-rel 90.5 0.27 9.1E-06 37.1 4.1 37 8-50 8-44 (126)
100 3nau_A Zinc fingers and homeob 90.2 0.029 9.8E-07 41.5 -1.5 31 136-166 12-42 (66)
101 3f52_A CLP gene regulator (CLG 90.2 0.4 1.4E-05 35.5 4.8 36 9-50 25-60 (117)
102 2l9r_A Homeobox protein NKX-3. 90.2 0.051 1.7E-06 39.5 -0.2 32 135-166 11-42 (69)
103 2ecb_A Zinc fingers and homeob 89.6 0.063 2.2E-06 41.0 -0.0 33 134-166 17-49 (89)
104 2l49_A C protein; P2 bacteriop 89.6 0.22 7.7E-06 35.5 2.9 32 13-50 5-36 (99)
105 2k9q_A Uncharacterized protein 89.4 0.23 7.9E-06 34.2 2.7 32 13-50 3-34 (77)
106 2eby_A Putative HTH-type trans 88.9 0.94 3.2E-05 33.3 5.9 33 12-50 10-43 (113)
107 1y9q_A Transcriptional regulat 88.8 0.59 2E-05 37.3 5.1 37 8-50 7-43 (192)
108 1b0n_A Protein (SINR protein); 88.6 0.43 1.5E-05 34.5 3.9 32 13-50 2-33 (111)
109 3o9x_A Uncharacterized HTH-typ 88.4 0.6 2E-05 35.5 4.7 29 16-50 75-103 (133)
110 3cec_A Putative antidote prote 88.1 1.3 4.4E-05 32.1 6.1 33 12-50 18-50 (104)
111 3u3w_A Transcriptional activat 88.0 0.57 1.9E-05 38.3 4.6 33 11-50 4-36 (293)
112 3k2a_A Homeobox protein MEIS2; 87.0 0.089 3.1E-06 37.4 -0.7 33 134-166 4-39 (67)
113 2jvl_A TRMBF1; coactivator, he 86.4 0.86 2.9E-05 34.0 4.5 34 11-50 33-68 (107)
114 3mlf_A Transcriptional regulat 86.3 0.094 3.2E-06 39.7 -1.0 39 6-50 17-55 (111)
115 2xi8_A Putative transcription 86.0 0.19 6.6E-06 32.7 0.6 30 15-50 4-33 (66)
116 3lfp_A CSP231I C protein; tran 85.9 0.67 2.3E-05 33.4 3.5 32 13-50 2-37 (98)
117 3kxa_A NGO0477 protein, putati 85.7 0.35 1.2E-05 38.4 2.0 35 10-50 66-100 (141)
118 3fym_A Putative uncharacterize 84.6 0.34 1.2E-05 37.8 1.5 34 11-50 2-35 (130)
119 2qfc_A PLCR protein; TPR, HTH, 84.6 0.6 2.1E-05 38.2 3.1 33 11-50 4-36 (293)
120 2bnm_A Epoxidase; oxidoreducta 84.6 1.2 4E-05 35.5 4.7 36 9-50 7-42 (198)
121 3bs3_A Putative DNA-binding pr 84.1 0.4 1.4E-05 32.3 1.5 32 13-50 11-42 (76)
122 2ict_A Antitoxin HIGA; helix-t 82.3 2.8 9.6E-05 29.7 5.5 33 12-50 8-40 (94)
123 3bdn_A Lambda repressor; repre 82.1 1.8 6.1E-05 35.4 4.9 35 10-50 15-49 (236)
124 3t76_A VANU, transcriptional r 82.1 1.6 5.4E-05 32.3 4.2 30 15-50 27-56 (88)
125 3omt_A Uncharacterized protein 81.4 1.6 5.4E-05 29.5 3.7 32 13-50 9-40 (73)
126 2awi_A PRGX; repressor, pherom 80.6 0.86 2.9E-05 40.0 2.7 32 12-50 3-34 (317)
127 1mh3_A Maltose binding-A1 home 80.2 0.14 4.6E-06 44.7 -2.6 39 128-166 365-403 (421)
128 1x2m_A LAG1 longevity assuranc 78.8 0.24 8.1E-06 35.9 -1.2 30 138-167 10-40 (64)
129 3trb_A Virulence-associated pr 76.8 3.4 0.00012 31.1 4.7 32 13-50 14-46 (104)
130 2ofy_A Putative XRE-family tra 75.3 3.7 0.00013 28.4 4.2 36 7-50 11-46 (86)
131 4ich_A Transcriptional regulat 75.3 0.84 2.9E-05 38.6 1.0 37 8-50 26-62 (311)
132 3bd1_A CRO protein; transcript 68.1 2 6.7E-05 29.7 1.4 28 16-50 3-30 (79)
133 2p5t_A Putative transcriptiona 65.9 1.3 4.3E-05 35.0 0.0 32 13-50 2-33 (158)
134 2l1p_A DNA-binding protein SAT 62.9 5.5 0.00019 30.7 3.1 52 17-110 24-77 (83)
135 3frw_A Putative Trp repressor 61.9 6.7 0.00023 31.3 3.5 39 6-50 38-77 (107)
136 3pxp_A Helix-turn-helix domain 61.4 5.2 0.00018 35.9 3.1 34 11-50 5-44 (292)
137 3r1f_A ESX-1 secretion-associa 61.2 13 0.00045 29.2 5.2 37 13-50 8-50 (135)
138 2auw_A Hypothetical protein NE 60.2 4.6 0.00016 34.1 2.5 40 5-50 74-122 (170)
139 4e1p_A Protein LSR2; anti-para 54.7 5.3 0.00018 29.1 1.7 23 88-110 34-56 (61)
140 3qwg_A ESX-1 secretion-associa 48.7 21 0.00071 27.8 4.3 25 25-50 24-48 (123)
141 2lk2_A Homeobox protein TGIF1; 46.3 3.2 0.00011 31.9 -0.7 33 135-167 12-47 (89)
142 2rgt_A Fusion of LIM/homeobox 46.2 2.6 8.7E-05 33.8 -1.3 28 128-155 136-163 (169)
143 4e1r_A Protein LSR2; anti-para 45.3 8.8 0.0003 29.8 1.7 23 88-110 59-81 (86)
144 1jhf_A LEXA repressor; LEXA SO 43.7 21 0.00072 28.6 3.8 35 10-50 8-45 (202)
145 2pij_A Prophage PFL 6 CRO; tra 36.3 22 0.00076 23.3 2.4 27 17-50 6-32 (67)
146 1iuf_A Centromere ABP1 protein 36.2 83 0.0028 24.5 6.1 28 23-50 28-55 (144)
147 3kor_A Possible Trp repressor; 30.4 41 0.0014 27.2 3.5 39 6-50 55-94 (119)
148 1rzs_A Antirepressor, regulato 29.6 32 0.0011 23.2 2.3 21 24-50 9-29 (61)
149 2fjr_A Repressor protein CI; g 28.4 40 0.0014 26.3 3.1 32 11-50 8-39 (189)
150 1neq_A DNA-binding protein NER 25.6 44 0.0015 23.6 2.6 24 21-50 18-41 (74)
151 1fme_A FSD-EY peptide; beta-BE 25.0 20 0.00067 22.5 0.5 15 6-20 14-28 (28)
152 1zx4_A P1 PARB, plasmid partit 24.6 66 0.0022 27.4 3.9 37 5-51 8-44 (192)
153 4fqn_A Malcavernin; helical do 24.2 52 0.0018 26.1 2.9 37 4-42 28-64 (98)
154 3fx7_A Putative uncharacterize 23.5 45 0.0015 26.1 2.4 20 5-24 6-25 (94)
155 1nr3_A MTH0916, DNA-binding pr 20.6 16 0.00054 27.7 -0.7 21 24-50 4-24 (122)
No 1
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=100.00 E-value=6.5e-40 Score=273.54 Aligned_cols=131 Identities=27% Similarity=0.402 Sum_probs=104.5
Q ss_pred CCCCChHHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14051 2 VDGINLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSALATQMLCAAQIASQQQQQQQQQHQQQQQQQ 81 (256)
Q Consensus 2 vd~~~l~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (256)
.|.+|++||++||+.||.|||+|||||+|||.||+.+||+.||||||||
T Consensus 7 ~~~~~~~~l~~fa~~fk~~ri~lg~tQ~~vg~alg~l~g~~~Sqtti~r------------------------------- 55 (164)
T 2xsd_C 7 EDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICR------------------------------- 55 (164)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHH-------------------------------
T ss_pred ccccchhHHHHHHHHHHHHHhhcCCcccccccccccccCCCcCcchhhh-------------------------------
Confidence 4789999999999999999999999999999999999999999999999
Q ss_pred hhchhcccCChhhhhhhhHHHHHHHHHHHHhhhcCCCCCCCCCcccccCCCcccchhhHhhhHHhhccCCCCCccccccC
Q psy14051 82 NTMFEKLDITPKSAQKIKPVLERWMKEAEERQVMSNMPGIISPPLISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDL 161 (256)
Q Consensus 82 ~~~FEkLdls~kna~KlkPvLekWL~EAE~~~~~gn~~~~i~~~~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~L 161 (256)
||+|++|+||||||||+|++||+|+|.........+.+....++||+||.|+...+..||.+|..+++|+..++..|
T Consensus 56 ---FE~l~ls~kn~~klkPlL~~wl~eae~~~~~~~~~~~~~~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~L 132 (164)
T 2xsd_C 56 ---FEALQLSFKNMCKLKPLLNKWLEETDSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGL 132 (164)
T ss_dssp ---HHTTCSBHHHHHHHHHHHHHHHHHHCC-----------------------CCHHHHHHHHHHHHHCSSCCHHHHHHH
T ss_pred ---hhccCCCHHHHHHcchhHHHHHhhhccccCCCcccccccccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 99999999999999999999999999764322222223344667999999999999999999999999999999999
Q ss_pred CCCCC
Q psy14051 162 KNPSA 166 (256)
Q Consensus 162 Ae~Ln 166 (256)
|..++
T Consensus 133 A~~l~ 137 (164)
T 2xsd_C 133 ADSLQ 137 (164)
T ss_dssp HHHHT
T ss_pred HHHHC
Confidence 99988
No 2
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=100.00 E-value=1.6e-39 Score=266.07 Aligned_cols=125 Identities=26% Similarity=0.469 Sum_probs=106.9
Q ss_pred ChHHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q psy14051 6 NLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSALATQMLCAAQIASQQQQQQQQQHQQQQQQQNTMF 85 (256)
Q Consensus 6 ~l~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F 85 (256)
+|+||++||+.||.|||+|||||+|||.||+.+||+.|||||||| |
T Consensus 1 ~~~~l~~fa~~~k~~ri~lg~tQ~~vg~al~~l~g~~~Sqtti~r----------------------------------f 46 (146)
T 1au7_A 1 GMRALEQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICR----------------------------------F 46 (146)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHH----------------------------------H
T ss_pred CccHHHHHHHHHHHHHHhccCcHHhhhhhcchhccCCCCcchHHH----------------------------------H
Confidence 689999999999999999999999999999999999999999999 9
Q ss_pred hcccCChhhhhhhhHHHHHHHHHHHHhhhcCCCCCCCCCcccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCC
Q psy14051 86 EKLDITPKSAQKIKPVLERWMKEAEERQVMSNMPGIISPPLISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPS 165 (256)
Q Consensus 86 EkLdls~kna~KlkPvLekWL~EAE~~~~~gn~~~~i~~~~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~L 165 (256)
|+|++|+||||||||+|++||+|+|..... ..+..+...++||+||.|++..+..||.+|..+++|+..++..||..+
T Consensus 47 e~l~ls~knm~kLkPlL~~wl~e~e~~~~~--~~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l 124 (146)
T 1au7_A 47 ENLQLSFKNACKLKAILSKWLEEAEQVGAL--YNEKVGANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEEL 124 (146)
T ss_dssp HTTCSBHHHHHHHHHHHHHHHHHCCC------------------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred hccCCChHHHHhcchHHHHHHHHhhcccCc--cCcccCCCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 999999999999999999999999965422 223334556679999999999999999999999999999999999988
Q ss_pred C
Q psy14051 166 A 166 (256)
Q Consensus 166 n 166 (256)
+
T Consensus 125 ~ 125 (146)
T 1au7_A 125 N 125 (146)
T ss_dssp T
T ss_pred C
Confidence 7
No 3
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=100.00 E-value=3.4e-39 Score=265.85 Aligned_cols=127 Identities=25% Similarity=0.391 Sum_probs=110.8
Q ss_pred ChHHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q psy14051 6 NLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSALATQMLCAAQIASQQQQQQQQQHQQQQQQQNTMF 85 (256)
Q Consensus 6 ~l~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F 85 (256)
..+||++||+.||.|||+|||||+|||.||+.+||+.|||||||| |
T Consensus 8 ~~~~l~~fa~~fk~~ri~lg~tq~~vg~al~~l~G~~~Sqtti~r----------------------------------f 53 (155)
T 3l1p_A 8 LQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTISR----------------------------------F 53 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHH----------------------------------H
T ss_pred hHHHHHHHHHHHHhhhheecccHHHHHHHHHhhcCcccccccccc----------------------------------c
Confidence 368999999999999999999999999999999999999999999 9
Q ss_pred hcccCChhhhhhhhHHHHHHHHHHHHhhhcCCCCCCCCCcccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCC
Q psy14051 86 EKLDITPKSAQKIKPVLERWMKEAEERQVMSNMPGIISPPLISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPS 165 (256)
Q Consensus 86 EkLdls~kna~KlkPvLekWL~EAE~~~~~gn~~~~i~~~~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~L 165 (256)
|+|++|+||||||||+|++||+|+|...........-....++||+||.+++..+..||.+|..+++|+..++..||..+
T Consensus 54 E~l~ls~~nm~kLkPlL~~Wl~eae~~~~~~~~~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l 133 (155)
T 3l1p_A 54 EALQLSLKNMSKLRPLLEKWVEEADNNENLQEISKSETLVQARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQL 133 (155)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHHTTCHHHHHSSCC---CCCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHT
T ss_pred ccccCChhhHhhcchHHHHHhhhhhcccCccccccccccccCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHc
Confidence 99999999999999999999999995432211111101113568899999999999999999999999999999999999
Q ss_pred C
Q psy14051 166 A 166 (256)
Q Consensus 166 n 166 (256)
+
T Consensus 134 ~ 134 (155)
T 3l1p_A 134 G 134 (155)
T ss_dssp T
T ss_pred C
Confidence 8
No 4
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=100.00 E-value=3.8e-39 Score=263.31 Aligned_cols=128 Identities=50% Similarity=0.708 Sum_probs=116.3
Q ss_pred CChHHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy14051 5 INLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSALATQMLCAAQIASQQQQQQQQQHQQQQQQQNTM 84 (256)
Q Consensus 5 ~~l~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (256)
+|++|+++||+.||.|||+|||||+|||.||+.+||+.||||||||
T Consensus 1 ~~~~~~~~fa~~f~~~ri~lg~tQ~~vg~al~~l~g~~~Sqsti~r---------------------------------- 46 (151)
T 3d1n_I 1 INMEEIREFAKNFKIRRLSLGLTQTQVGQAMTATEGPAYSQSAISR---------------------------------- 46 (151)
T ss_dssp -CHHHHHHHHHHHHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHH----------------------------------
T ss_pred CCHHHHHHHHHHHHHHHhhcCCCcccHHHhhccccCCCCCcccccc----------------------------------
Confidence 6899999999999999999999999999999999999999999999
Q ss_pred hhcccCChhhhhhhhHHHHHHHHHHHHhhhcC--CCCCCCCCc-ccccCCCcccchhhHhhhHHhhccCCCCCccccccC
Q psy14051 85 FEKLDITPKSAQKIKPVLERWMKEAEERQVMS--NMPGIISPP-LISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDL 161 (256)
Q Consensus 85 FEkLdls~kna~KlkPvLekWL~EAE~~~~~g--n~~~~i~~~-~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~L 161 (256)
||+|++|+|||||+||+|++||+|+|.....+ +..+..+.. .++||+||.|+...+..||.+|..+++|+..++..|
T Consensus 47 fe~l~ls~kn~~klkPll~~Wl~e~e~~~~~~~~~~~~~~~~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~L 126 (151)
T 3d1n_I 47 FEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEM 126 (151)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHHCSSCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHH
T ss_pred ccCCCCChhHHHHhchhHHHHHHHHHhccccCcccccccCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999999999999999999999876555 223333333 456999999999999999999999999999999999
Q ss_pred CCCCC
Q psy14051 162 KNPSA 166 (256)
Q Consensus 162 Ae~Ln 166 (256)
|..++
T Consensus 127 A~~l~ 131 (151)
T 3d1n_I 127 AKELN 131 (151)
T ss_dssp HHHHT
T ss_pred HHHHC
Confidence 99887
No 5
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=100.00 E-value=3.3e-36 Score=248.78 Aligned_cols=131 Identities=28% Similarity=0.412 Sum_probs=108.7
Q ss_pred CCCCChHHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14051 2 VDGINLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSALATQMLCAAQIASQQQQQQQQQHQQQQQQQ 81 (256)
Q Consensus 2 vd~~~l~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (256)
.|.+|++||++||+.||.+|++|||||++||.+++.+||+.|||+||||
T Consensus 1 ~~~~~~~~~~~~~~~~k~~r~~lg~tQ~~vg~~lg~l~g~~~sq~ti~r------------------------------- 49 (160)
T 1e3o_C 1 EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISR------------------------------- 49 (160)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHH-------------------------------
T ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHhhccccCCCcCcccccc-------------------------------
Confidence 3789999999999999999999999999999999999999999999999
Q ss_pred hhchhcccCChhhhhhhhHHHHHHHHHHHHhhhcCCC---CC-----CCCCcccccCCCcccchhhHhhhHHhhccCCCC
Q psy14051 82 NTMFEKLDITPKSAQKIKPVLERWMKEAEERQVMSNM---PG-----IISPPLISQNQNMVNAPLNLSLNSNAVSANFHP 153 (256)
Q Consensus 82 ~~~FEkLdls~kna~KlkPvLekWL~EAE~~~~~gn~---~~-----~i~~~~~KRKRRTSIep~vKslLEs~F~knPKP 153 (256)
||+|++|+|||||+||+|++||+|+|......+. ++ -..+..++||+||.|+...+..||.+|..+++|
T Consensus 50 ---fE~l~lS~knm~klkPlL~~WL~e~e~~~~~~~~~~s~~~~~~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp 126 (160)
T 1e3o_C 50 ---FEALNLSFKNMSKLKPLLEKWLNDAEANLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFMENQKP 126 (160)
T ss_dssp ---HHHTCSCHHHHHHHHHHHHHHHHHHC----------------------------CCCCCCHHHHHHHHHHHHHCSSC
T ss_pred ---ccccCCChHHHHhcchhHHHHHHhhhcccccCCCCCCCCCcCCCCCCCCCCCCcCccccCHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999965432211 01 111234679999999999999999999999999
Q ss_pred CccccccCCCCCC
Q psy14051 154 NVNPRTDLKNPSA 166 (256)
Q Consensus 154 SseEIT~LAe~Ln 166 (256)
+..++..||..++
T Consensus 127 ~~~~r~~LA~~l~ 139 (160)
T 1e3o_C 127 TSEDITLIAEQLN 139 (160)
T ss_dssp CHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHC
Confidence 9999999999887
No 6
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.20 E-value=2.3e-12 Score=111.10 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhc
Q psy14051 8 DEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSALATQMLCAAQIASQQQQQQQQQHQQQQQQQNTMFEK 87 (256)
Q Consensus 8 ~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FEk 87 (256)
++.-+|++.+|..+...|+||.+|+..+| .|||+||| |++
T Consensus 26 e~p~~l~~~Ik~~l~~~gitQ~~lA~~~G------iSqs~ISr----------------------------------~l~ 65 (194)
T 1ic8_A 26 EDPWRVAKMVKSYLQQHNIPQREVVDTTG------LNQSHLSQ----------------------------------HLN 65 (194)
T ss_dssp SCHHHHHHHHHHHHHHTTCCHHHHHHHHC------CCHHHHHH----------------------------------HHH
T ss_pred cCHHHHHHHHHHHHHHcCCCHHHHHHHhC------CChHHHHH----------------------------------HHh
Confidence 45678999999999999999999999984 78999998 666
Q ss_pred ccCChhhhhhhhHHHHHHHHHHHHh----hhc-CC----CCCCCC--CcccccCCCcccchhhHhhhHHhhccCCCCCcc
Q psy14051 88 LDITPKSAQKIKPVLERWMKEAEER----QVM-SN----MPGIIS--PPLISQNQNMVNAPLNLSLNSNAVSANFHPNVN 156 (256)
Q Consensus 88 Ldls~kna~KlkPvLekWL~EAE~~----~~~-gn----~~~~i~--~~~~KRKRRTSIep~vKslLEs~F~knPKPSse 156 (256)
....++++ + ++.|..|+...... ... ++ ..+-.. ...++||+||.+++..+..||++|..+++|+..
T Consensus 66 ~~~~~~~~-k-raaly~W~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~ 143 (194)
T 1ic8_A 66 KGTPMKTQ-K-RAALYTWYVRKQREVAQQFTHAGQGGLIEEPTGDELPTKKGRRNRFKWGPASQQILFQAYERQKNPSKE 143 (194)
T ss_dssp SBCCCCHH-H-HHHHHHHHHHHTTTTHHHHCCC--------------------CCCCCCCHHHHHHHHHHHHHHCCCCTT
T ss_pred cCcccccc-c-cccchhhHHHhhhhhhccccCCCCCCCCCCCcccccccccCCCCCcccCHHHHHHHHHHHHhcCCCCHH
Confidence 55444443 3 57889999877432 111 11 111111 123459999999999999999999999999999
Q ss_pred ccccCCCCCC
Q psy14051 157 PRTDLKNPSA 166 (256)
Q Consensus 157 EIT~LAe~Ln 166 (256)
+...||+.++
T Consensus 144 ~Re~la~~~~ 153 (194)
T 1ic8_A 144 ERETLVEECN 153 (194)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999999998
No 7
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.73 E-value=5.2e-09 Score=92.56 Aligned_cols=115 Identities=19% Similarity=0.169 Sum_probs=83.9
Q ss_pred HHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhccc
Q psy14051 10 IKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSALATQMLCAAQIASQQQQQQQQQHQQQQQQQNTMFEKLD 89 (256)
Q Consensus 10 l~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FEkLd 89 (256)
.-+|++..|..|+..|+||.+|...+| .|||+||| ||+..
T Consensus 29 ~~~~~~~Ik~~r~~~gltQ~evA~~tG------ISqS~ISq----------------------------------~e~~g 68 (221)
T 2h8r_A 29 PWRAAKMIKGYMQQHNIPQREVVDVTG------LNQSHLSQ----------------------------------HLNKG 68 (221)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHT------CCHHHHHH----------------------------------HHTTC
T ss_pred cHHHHHHHHHHHHHcCCCHHHHHHHhC------CCHHHHHH----------------------------------HHhCC
Confidence 357889999999999999999999884 57999998 77633
Q ss_pred CChhhhhhhhHHHHHHHHHHHHh---h------hcCCC-------------CCC------------CC-C--cccccCCC
Q psy14051 90 ITPKSAQKIKPVLERWMKEAEER---Q------VMSNM-------------PGI------------IS-P--PLISQNQN 132 (256)
Q Consensus 90 ls~kna~KlkPvLekWL~EAE~~---~------~~gn~-------------~~~------------i~-~--~~~KRKRR 132 (256)
++.+..|+ ..+..|+...... . ..+++ ++| .+ . ..++||.|
T Consensus 69 -~~~t~~k~-a~~y~Wy~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~RR~R 146 (221)
T 2h8r_A 69 -TPMKTQKR-AALYTWYVRKQREILRQFNQTVQSSGNMTDKSSQDQLLFLFPEFSQQSHGPGQSDDACSEPTNKKMRRNR 146 (221)
T ss_dssp -CCCCHHHH-HHHHHHHHHHHHHHHHTTTTCC-------------------------------------------CCCCC
T ss_pred -CchhHHHH-HHHHHHHHHHhhhhhhcccccccccccccccccccchhhhhhhhhccccCCCCCcccccccccCCCCCCC
Confidence 55666665 6777787764221 0 00111 011 01 1 13459999
Q ss_pred cccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 133 MVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 133 TSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
|.+++..+..||++|..+++|+..+..+||+.++
T Consensus 147 ~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n 180 (221)
T 2h8r_A 147 FKWGPASQQILYQAYDRQKNPSKEEREALVEECN 180 (221)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHC
Confidence 9999999999999999999999999999999887
No 8
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=98.01 E-value=1.1e-06 Score=71.91 Aligned_cols=126 Identities=13% Similarity=0.145 Sum_probs=72.4
Q ss_pred CCCCChHHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14051 2 VDGINLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSALATQMLCAAQIASQQQQQQQQQHQQQQQQQ 81 (256)
Q Consensus 2 vd~~~l~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (256)
++.+|..+|.+=.+.+ --.-+++|+-++... -..||.++|..+ -.
T Consensus 1 ~~~~dt~~i~~~i~~~---l~~~~i~q~~fa~~i-----lg~sq~~ls~~l---------------------------~~ 45 (164)
T 2d5v_A 1 MEEINTKEVAQRITTE---LKRYSIPQAIFAQRV-----LCRSQGTLSDLL---------------------------RN 45 (164)
T ss_dssp CCCCCHHHHHHHHHHH---HHHTTCCHHHHHHHH-----TSCCHHHHHHHH---------------------------HS
T ss_pred CCccCHHHHHHHHHHH---HHHcCCchHHHHHHH-----hcCCchhHHHHc---------------------------CC
Confidence 3566777775544444 222345666665432 134788876511 12
Q ss_pred hhchhcccCChhhhhhhhHHHHHHHHHHHHhhhc-CCC-----C---CCCCCcccccCCCcccchhhHhhhHHhhccCCC
Q psy14051 82 NTMFEKLDITPKSAQKIKPVLERWMKEAEERQVM-SNM-----P---GIISPPLISQNQNMVNAPLNLSLNSNAVSANFH 152 (256)
Q Consensus 82 ~~~FEkLdls~kna~KlkPvLekWL~EAE~~~~~-gn~-----~---~~i~~~~~KRKRRTSIep~vKslLEs~F~knPK 152 (256)
+.-|++|. +-++ ..--+..||.+.+..... -.+ . ..-....++||+||.|++..+..||..|..+++
T Consensus 46 pkpw~~l~-~g~~---~y~rm~~WL~~pe~~r~~~l~~~~~~~~~~~~~~~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~y 121 (164)
T 2d5v_A 46 PKPWSKLK-SGRE---TFRRMWKWLQEPEFQRMSALRLAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKR 121 (164)
T ss_dssp CCCGGGCS-TTHH---HHHHHHHHHHSCHHHHHHHTTC--------------------CCCCCCHHHHHHHHHHHHHCSS
T ss_pred CCCHHHHc-ccch---HHHHHHHHHhccchhhhhhhhcccccccccccCCcCCCCCCCCCCcCCHHHHHHHHHHHhcCCC
Confidence 34466665 3221 122256798765533110 000 0 001123456999999999999999999999999
Q ss_pred CCccccccCCCCCC
Q psy14051 153 PNVNPRTDLKNPSA 166 (256)
Q Consensus 153 PSseEIT~LAe~Ln 166 (256)
|+..++..||..++
T Consensus 122 p~~~~r~~la~~l~ 135 (164)
T 2d5v_A 122 PSKELQITISQQLG 135 (164)
T ss_dssp CCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHC
Confidence 99999999999988
No 9
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=97.84 E-value=2.9e-06 Score=60.34 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=39.9
Q ss_pred CcccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 124 PPLISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 124 ~~~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
...++||+||.|++..+..||.+|..+++|+..++..||..++
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 45 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLN 45 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC
Confidence 3456799999999999999999999999999999999999998
No 10
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.81 E-value=3.6e-06 Score=60.18 Aligned_cols=42 Identities=10% Similarity=0.040 Sum_probs=39.4
Q ss_pred cccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 125 PLISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 125 ~~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
..++||+||.|++..+..||.+|..+++|+..++..||..++
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 45 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATS 45 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHC
Confidence 456799999999999999999999999999999999999988
No 11
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=97.79 E-value=3.6e-06 Score=59.92 Aligned_cols=42 Identities=10% Similarity=0.031 Sum_probs=39.1
Q ss_pred cccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 125 PLISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 125 ~~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
..++||+||.|++..+..||.+|..+++|+..++..||..++
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 45 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSG 45 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhC
Confidence 345699999999999999999999999999999999999887
No 12
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=97.76 E-value=6.6e-06 Score=58.50 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=38.4
Q ss_pred cccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 127 ISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 127 ~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
++||+||.|++..+..||.+|..+++|+..++..||..++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 41 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTN 41 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHC
Confidence 5789999999999999999999999999999999999998
No 13
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.74 E-value=6.1e-06 Score=58.97 Aligned_cols=42 Identities=7% Similarity=0.057 Sum_probs=39.4
Q ss_pred cccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 125 PLISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 125 ~~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
..++||+||.|++..+..||..|..+++|+..++..||..++
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 45 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLG 45 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 456799999999999999999999999999999999999988
No 14
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=4.3e-06 Score=59.65 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=39.1
Q ss_pred cccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 125 PLISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 125 ~~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
..++||+||.|++..+..||.+|..+++|+..++..||..++
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 45 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVH 45 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHC
Confidence 345799999999999999999999999999999999999887
No 15
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.73 E-value=6.1e-06 Score=60.47 Aligned_cols=42 Identities=12% Similarity=0.046 Sum_probs=39.5
Q ss_pred cccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 125 PLISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 125 ~~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
+.++||+||.|++..+..||.+|..+++|+..++..||..++
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 45 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKID 45 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhC
Confidence 456799999999999999999999999999999999999998
No 16
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.69 E-value=7.3e-06 Score=59.67 Aligned_cols=42 Identities=10% Similarity=0.062 Sum_probs=39.3
Q ss_pred cccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 125 PLISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 125 ~~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
..++||+||.|++..+..||.+|..+++|+..++..||..++
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 45 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTG 45 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC
Confidence 345799999999999999999999999999999999999998
No 17
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=97.67 E-value=6.5e-06 Score=59.52 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=40.4
Q ss_pred CCcccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 123 SPPLISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 123 ~~~~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
+...++||+||.|++..+..||.+|..+++|+..++..||..++
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 45 (73)
T 2l7z_A 2 SHMLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN 45 (73)
T ss_dssp CSSSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHC
Confidence 34456799999999999999999999999999999999999988
No 18
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.67 E-value=7.9e-06 Score=59.75 Aligned_cols=42 Identities=7% Similarity=0.022 Sum_probs=39.3
Q ss_pred cccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 125 PLISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 125 ~~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
..++||+||.|++..+..||.+|..+++|+..++..||..++
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 45 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKIN 45 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHC
Confidence 345699999999999999999999999999999999999998
No 19
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=97.66 E-value=8.5e-06 Score=59.31 Aligned_cols=42 Identities=7% Similarity=-0.041 Sum_probs=39.3
Q ss_pred cccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 125 PLISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 125 ~~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
..++||+||.|++..+..||.+|..+++|+..++..||..++
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 47 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIR 47 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC
Confidence 456799999999999999999999999999999999999998
No 20
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=97.65 E-value=6.6e-06 Score=59.61 Aligned_cols=41 Identities=7% Similarity=0.032 Sum_probs=38.5
Q ss_pred ccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 126 LISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 126 ~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
.++||+||.|++..+..||.+|..+++|+..++..||..++
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~ 55 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVG 55 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHC
Confidence 45699999999999999999999999999999999999887
No 21
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=97.65 E-value=6.6e-06 Score=58.04 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=38.0
Q ss_pred cccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 127 ISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 127 ~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
++||+||.|++..+..||.+|..+++|+..++..||..++
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~ 41 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTG 41 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHC
Confidence 4689999999999999999999999999999999999887
No 22
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.65 E-value=8.9e-06 Score=58.10 Aligned_cols=43 Identities=5% Similarity=-0.170 Sum_probs=39.6
Q ss_pred CcccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 124 PPLISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 124 ~~~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
...++||+||.|++..+..||.+|..+++|+..++..||..++
T Consensus 3 ~~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~ 45 (70)
T 2e1o_A 3 SGSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQ 45 (70)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHC
Confidence 3456788999999999999999999999999999999999988
No 23
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=97.65 E-value=8.1e-06 Score=55.99 Aligned_cols=38 Identities=5% Similarity=0.019 Sum_probs=36.7
Q ss_pred cCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 129 QNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 129 RKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
||+||.+++..+..||..|..+++|+..++..||..++
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 38 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLS 38 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHC
Confidence 68899999999999999999999999999999999988
No 24
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=97.64 E-value=5.2e-06 Score=57.95 Aligned_cols=40 Identities=10% Similarity=0.011 Sum_probs=33.2
Q ss_pred cccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 127 ISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 127 ~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
++||+||.|++..+..||.+|..+++|+..++..||..++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 41 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILN 41 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999999999999999999888
No 25
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=97.63 E-value=5.6e-06 Score=57.59 Aligned_cols=40 Identities=10% Similarity=0.011 Sum_probs=34.2
Q ss_pred cccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 127 ISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 127 ~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
++||+||.+++..+..||.+|..+++|+..++..||..++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 41 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELG 41 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999999999999999999887
No 26
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=97.58 E-value=1.3e-05 Score=58.87 Aligned_cols=41 Identities=12% Similarity=0.078 Sum_probs=38.9
Q ss_pred ccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 126 LISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 126 ~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
.++||+||.|++..+..||.+|..+++|+..++..||..++
T Consensus 20 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 60 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILN 60 (84)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 45699999999999999999999999999999999999988
No 27
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=97.58 E-value=9.6e-06 Score=55.05 Aligned_cols=39 Identities=5% Similarity=-0.038 Sum_probs=37.4
Q ss_pred ccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 128 SQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 128 KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
+||+||.+++..+..||..|..+++|+..++..||..++
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~ 40 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLK 40 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC
Confidence 688999999999999999999999999999999999887
No 28
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=8.5e-06 Score=64.59 Aligned_cols=43 Identities=14% Similarity=0.097 Sum_probs=40.1
Q ss_pred CcccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 124 PPLISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 124 ~~~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
..+++||+||.+++..+..||++|..+++|+.+++.+||+.+|
T Consensus 2 ~~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln 44 (102)
T 2da6_A 2 SSGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECN 44 (102)
T ss_dssp TTCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999995
No 29
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=97.58 E-value=4.6e-06 Score=63.28 Aligned_cols=61 Identities=10% Similarity=0.002 Sum_probs=38.9
Q ss_pred HHHHHHHHhhhcCCCCCCCCCcccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 104 RWMKEAEERQVMSNMPGIISPPLISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 104 kWL~EAE~~~~~gn~~~~i~~~~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
.||.+...........+. ...++||+||.|+...+..||.+|..+++|+..++..||..++
T Consensus 12 ~W~~~~r~~~~~~~~~~~--~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~ 72 (97)
T 1b72_A 12 DWMKVKRNPPKTAKVSEP--GLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLE 72 (97)
T ss_dssp GGGGC----------------------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHT
T ss_pred cccccccCCCCCCCCCCC--CCCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhC
Confidence 488876654432222111 2245688999999999999999999999999999999999888
No 30
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=97.57 E-value=6.8e-06 Score=56.90 Aligned_cols=40 Identities=8% Similarity=0.059 Sum_probs=31.2
Q ss_pred cccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 127 ISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 127 ~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
++||+||.+++..+..||..|..+++|+..++..||..++
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~ 43 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCG 43 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHC
Confidence 4689999999999999999999999999999999999887
No 31
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=97.56 E-value=2.2e-05 Score=59.49 Aligned_cols=43 Identities=7% Similarity=-0.024 Sum_probs=40.0
Q ss_pred CcccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 124 PPLISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 124 ~~~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
..+++||+||.|++..+..||.+|..+++|+..++..||..++
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~ 55 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLK 55 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTT
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC
Confidence 3456799999999999999999999999999999999999998
No 32
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=97.56 E-value=1e-05 Score=57.63 Aligned_cols=39 Identities=5% Similarity=-0.035 Sum_probs=37.6
Q ss_pred ccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 128 SQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 128 KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
+||+||.|++..+..||.+|..+++|+..++..||..++
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 40 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIH 40 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHT
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 689999999999999999999999999999999999888
No 33
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=97.53 E-value=1.4e-05 Score=57.15 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=39.7
Q ss_pred CcccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 124 PPLISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 124 ~~~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
...++||+||.+++..+..||.+|..+++|+..++..||..++
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~ 47 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTD 47 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC
Confidence 3456789999999999999999999999999999999999887
No 34
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=1.6e-05 Score=58.21 Aligned_cols=41 Identities=15% Similarity=0.025 Sum_probs=38.5
Q ss_pred ccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 126 LISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 126 ~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
.++||+||.|++..+..||.+|..+++|+..++..||..++
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 55 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLG 55 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC
Confidence 45699999999999999999999999999999999999887
No 35
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=97.51 E-value=1.2e-05 Score=56.46 Aligned_cols=40 Identities=10% Similarity=-0.096 Sum_probs=36.0
Q ss_pred cccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 127 ISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 127 ~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
++||+||.|++..+..||..|..+++|+..++..||..++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 41 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLN 41 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC
Confidence 4688999999999999999999999999999999999887
No 36
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=97.50 E-value=1.3e-05 Score=55.60 Aligned_cols=38 Identities=8% Similarity=-0.087 Sum_probs=35.8
Q ss_pred cCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 129 QNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 129 RKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
||+||.+++..+..||..|..+++|+..++..||..++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 39 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLN 39 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHC
Confidence 67899999999999999999999999999999999887
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=97.50 E-value=1.5e-05 Score=56.34 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=37.1
Q ss_pred ccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 128 SQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 128 KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
.||+||.+++..+..||..|..+++|+..++..||..++
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~ 39 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLN 39 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHT
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHC
Confidence 478999999999999999999999999999999999988
No 38
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.48 E-value=1.3e-05 Score=60.62 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=39.6
Q ss_pred cccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 125 PLISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 125 ~~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
..++||+||.|++..+..||.+|..+++|+..++..||+.++
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~ 45 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACN 45 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC
Confidence 456799999999999999999999999999999999999998
No 39
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=97.48 E-value=1.6e-05 Score=56.75 Aligned_cols=39 Identities=5% Similarity=-0.066 Sum_probs=37.5
Q ss_pred ccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 128 SQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 128 KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
+||+||.|++..+..||.+|..+++|+..++..||..++
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 40 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALS 40 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHT
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHC
Confidence 688999999999999999999999999999999999888
No 40
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=97.46 E-value=1.4e-05 Score=58.92 Aligned_cols=43 Identities=5% Similarity=-0.031 Sum_probs=34.2
Q ss_pred CcccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 124 PPLISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 124 ~~~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
....+||+||.|+...+..||..|..+++|+..++..||..++
T Consensus 16 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~ 58 (81)
T 1b8i_A 16 TNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALS 58 (81)
T ss_dssp --------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 3455789999999999999999999999999999999999887
No 41
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=97.43 E-value=1.7e-05 Score=58.10 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=38.1
Q ss_pred cccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 125 PLISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 125 ~~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
..++||+||.|++..+..||.+|..+++|+..++..||..++
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 56 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTN 56 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHC
Confidence 345699999999999999999999999999999999999887
No 42
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=97.37 E-value=2.7e-05 Score=57.94 Aligned_cols=42 Identities=7% Similarity=-0.086 Sum_probs=35.2
Q ss_pred cccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 125 PLISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 125 ~~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
..++||+||.|+...+..||..|..+++|+..++..||..++
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~ 66 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALS 66 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhC
Confidence 345689999999999999999999999999999999999988
No 43
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=97.36 E-value=2.8e-05 Score=55.31 Aligned_cols=39 Identities=8% Similarity=-0.061 Sum_probs=37.3
Q ss_pred ccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 128 SQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 128 KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
+||+||.|++..+..||..|..+++|+..++..||..++
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 40 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLA 40 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC
Confidence 588999999999999999999999999999999999887
No 44
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=97.34 E-value=4e-05 Score=56.94 Aligned_cols=41 Identities=2% Similarity=-0.176 Sum_probs=38.6
Q ss_pred ccccCCCcccchhhHhhhHHhhcc----CCCCCccccccCCCCCC
Q psy14051 126 LISQNQNMVNAPLNLSLNSNAVSA----NFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 126 ~~KRKRRTSIep~vKslLEs~F~k----nPKPSseEIT~LAe~Ln 166 (256)
.++||+||.|++..+..||.+|.. +++|+..++..||..++
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lg 59 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETG 59 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhC
Confidence 457899999999999999999999 99999999999999998
No 45
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=97.34 E-value=4.3e-05 Score=55.56 Aligned_cols=41 Identities=5% Similarity=-0.103 Sum_probs=38.4
Q ss_pred ccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 126 LISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 126 ~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
.++||+||.|++..+..||.+|..+++|+..++..||..++
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 51 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLN 51 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHC
Confidence 44688999999999999999999999999999999999887
No 46
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.30 E-value=1.6e-05 Score=58.14 Aligned_cols=41 Identities=2% Similarity=-0.216 Sum_probs=38.6
Q ss_pred ccccCCCcccchhhHhhhHHhhccC----CCCCccccccCCCCCC
Q psy14051 126 LISQNQNMVNAPLNLSLNSNAVSAN----FHPNVNPRTDLKNPSA 166 (256)
Q Consensus 126 ~~KRKRRTSIep~vKslLEs~F~kn----PKPSseEIT~LAe~Ln 166 (256)
.++||+||.|+...+..||.+|..+ ++|+..++..||..++
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lg 50 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELN 50 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhC
Confidence 4569999999999999999999999 9999999999999988
No 47
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=97.27 E-value=3.7e-05 Score=59.74 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=33.6
Q ss_pred CcccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 124 PPLISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 124 ~~~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
...++||+||.+++..+..||.+|..+++|+..+..+||+.+|
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n 47 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECN 47 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Confidence 3456799999999999999999999999999999999999944
No 48
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.17 E-value=6.2e-05 Score=53.95 Aligned_cols=42 Identities=7% Similarity=0.014 Sum_probs=38.3
Q ss_pred cccccCCCcccchhhHhhhHHhhcc---CCCCCccccccCCCCCC
Q psy14051 125 PLISQNQNMVNAPLNLSLNSNAVSA---NFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 125 ~~~KRKRRTSIep~vKslLEs~F~k---nPKPSseEIT~LAe~Ln 166 (256)
..++||+||.++...+..||..|.. +|+|+.++...||..++
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~ 48 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTN 48 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHC
Confidence 3456899999999999999999976 99999999999999887
No 49
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=97.15 E-value=8e-05 Score=55.60 Aligned_cols=41 Identities=2% Similarity=-0.210 Sum_probs=37.7
Q ss_pred cccccCCCcccchhhHhhhHHhhcc-----CCCCCccccccCCCCCC
Q psy14051 125 PLISQNQNMVNAPLNLSLNSNAVSA-----NFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 125 ~~~KRKRRTSIep~vKslLEs~F~k-----nPKPSseEIT~LAe~Ln 166 (256)
..++||+||.|+...+..|| .|.. +++|+..++.+||..++
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lg 59 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETG 59 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhC
Confidence 35579999999999999999 7999 99999999999999998
No 50
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.11 E-value=7.4e-05 Score=52.20 Aligned_cols=40 Identities=8% Similarity=0.028 Sum_probs=37.3
Q ss_pred cccCCCcccchhhHhhhHHhh---ccCCCCCccccccCCCCCC
Q psy14051 127 ISQNQNMVNAPLNLSLNSNAV---SANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 127 ~KRKRRTSIep~vKslLEs~F---~knPKPSseEIT~LAe~Ln 166 (256)
+.||+||.+++..+..||..| ..+|+|+.+++..||..++
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~ 44 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCG 44 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHC
Confidence 358899999999999999999 9999999999999999887
No 51
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=97.06 E-value=7.7e-05 Score=55.35 Aligned_cols=42 Identities=7% Similarity=-0.050 Sum_probs=38.8
Q ss_pred cccccCCCcccchhhHhhhHHhhcc---CCCCCccccccCCCCCC
Q psy14051 125 PLISQNQNMVNAPLNLSLNSNAVSA---NFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 125 ~~~KRKRRTSIep~vKslLEs~F~k---nPKPSseEIT~LAe~Ln 166 (256)
..++||+||.|+...+..||..|.. +|+|+..++..||..++
T Consensus 24 ~~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~g 68 (87)
T 1mnm_C 24 KSTKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTS 68 (87)
T ss_dssp EESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHC
T ss_pred cCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHC
Confidence 3457889999999999999999999 99999999999999887
No 52
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=96.97 E-value=0.00012 Score=54.27 Aligned_cols=43 Identities=5% Similarity=-0.014 Sum_probs=38.9
Q ss_pred CcccccCCCcccchhhHhhhHHhhcc---CCCCCccccccCCCCCC
Q psy14051 124 PPLISQNQNMVNAPLNLSLNSNAVSA---NFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 124 ~~~~KRKRRTSIep~vKslLEs~F~k---nPKPSseEIT~LAe~Ln 166 (256)
...++||+||.++...+..||..|.. +|+|+.++...||..++
T Consensus 3 ~~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~g 48 (83)
T 2dmn_A 3 SGSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTN 48 (83)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHC
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHC
Confidence 34568999999999999999999988 69999999999999887
No 53
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=96.96 E-value=0.00013 Score=52.26 Aligned_cols=39 Identities=8% Similarity=0.067 Sum_probs=36.7
Q ss_pred ccCCCcccchhhHhhhHHhh---ccCCCCCccccccCCCCCC
Q psy14051 128 SQNQNMVNAPLNLSLNSNAV---SANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 128 KRKRRTSIep~vKslLEs~F---~knPKPSseEIT~LAe~Ln 166 (256)
.||+||.+++..+..||..| ..+|+|+..++..||..++
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~ 42 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCG 42 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHC
Confidence 37889999999999999999 9999999999999999887
No 54
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=96.84 E-value=0.00016 Score=52.01 Aligned_cols=38 Identities=8% Similarity=0.020 Sum_probs=36.1
Q ss_pred cCCCcccchhhHhhhHHhhcc-CCCCCccccccCCCCCC
Q psy14051 129 QNQNMVNAPLNLSLNSNAVSA-NFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 129 RKRRTSIep~vKslLEs~F~k-nPKPSseEIT~LAe~Ln 166 (256)
+|+||.|++..+..||.+|.+ +++|+..++..||..++
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~ 41 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAG 41 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC
Confidence 688999999999999999995 99999999999999988
No 55
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.82 E-value=0.00027 Score=53.42 Aligned_cols=42 Identities=7% Similarity=0.002 Sum_probs=38.9
Q ss_pred cccccCCCcccchhhHhhhHHhhcc-CCCCCccccccCCCCCC
Q psy14051 125 PLISQNQNMVNAPLNLSLNSNAVSA-NFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 125 ~~~KRKRRTSIep~vKslLEs~F~k-nPKPSseEIT~LAe~Ln 166 (256)
...+||.||+|++..+..|+++|.. +++|+.+++..||..++
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tG 46 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLD 46 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 3456889999999999999999999 99999999999999888
No 56
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=96.78 E-value=0.00018 Score=52.93 Aligned_cols=39 Identities=8% Similarity=0.067 Sum_probs=35.8
Q ss_pred ccCCCcccchhhHhhhHHhh---ccCCCCCccccccCCCCCC
Q psy14051 128 SQNQNMVNAPLNLSLNSNAV---SANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 128 KRKRRTSIep~vKslLEs~F---~knPKPSseEIT~LAe~Ln 166 (256)
.||+||.|+...+..||.+| ..+|+|+.+++..||..++
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~ 42 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCG 42 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHC
Confidence 37889999999999999999 9999999999999999988
No 57
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=96.74 E-value=0.00019 Score=51.38 Aligned_cols=38 Identities=8% Similarity=0.057 Sum_probs=35.9
Q ss_pred cCCCcccchhhHhhhHHhhcc-CCCCCccccccCCCCCC
Q psy14051 129 QNQNMVNAPLNLSLNSNAVSA-NFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 129 RKRRTSIep~vKslLEs~F~k-nPKPSseEIT~LAe~Ln 166 (256)
+|+||.+++..+..||.+|.. +++|+..++..||..++
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~ 40 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAG 40 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHT
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHC
Confidence 578999999999999999996 99999999999999988
No 58
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=96.71 E-value=0.00019 Score=54.29 Aligned_cols=41 Identities=17% Similarity=0.116 Sum_probs=35.8
Q ss_pred ccccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 126 LISQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 126 ~~KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
...||+||.+++..+..||..|..+++|+..++..||..++
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~ 63 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESG 63 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC
Confidence 34588899999999999999999999999999999999887
No 59
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=96.50 E-value=0.00032 Score=51.79 Aligned_cols=39 Identities=8% Similarity=-0.026 Sum_probs=34.5
Q ss_pred ccCCCcccchhhHhhhHHhhcc---CCCCCccccccCCCCCC
Q psy14051 128 SQNQNMVNAPLNLSLNSNAVSA---NFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 128 KRKRRTSIep~vKslLEs~F~k---nPKPSseEIT~LAe~Ln 166 (256)
|+|+|+.|+...+..||..|.. +|+|+..++..||..++
T Consensus 2 K~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~g 43 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTS 43 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHC
Confidence 6777888999999999999999 99999999999999888
No 60
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=96.48 E-value=0.00038 Score=49.83 Aligned_cols=39 Identities=13% Similarity=-0.029 Sum_probs=36.9
Q ss_pred ccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 128 SQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 128 KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
.++.||.+++..+..||..|..+++|+..++..||..++
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~ 44 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITG 44 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC
Confidence 477899999999999999999999999999999999887
No 61
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=96.45 E-value=0.00033 Score=48.40 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=32.1
Q ss_pred CCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 131 QNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 131 RRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
.||.|++..+..||..|..+++|+..++..||..++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 37 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIG 37 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHC
Confidence 389999999999999999999999999999999887
No 62
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.41 E-value=0.00055 Score=49.54 Aligned_cols=38 Identities=13% Similarity=0.054 Sum_probs=35.6
Q ss_pred cCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 129 QNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 129 RKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
.+.||.|++..+..||..|..+++|+..++..||..++
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~ 46 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTG 46 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC
Confidence 45689999999999999999999999999999999887
No 63
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.18 E-value=0.00082 Score=48.72 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=34.1
Q ss_pred cCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 129 QNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 129 RKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
++||+-+++..+..||..|..+++|+..++..||..++
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~ 45 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETK 45 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHC
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhC
Confidence 34566689999999999999999999999999999887
No 64
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=96.16 E-value=0.00072 Score=46.56 Aligned_cols=36 Identities=8% Similarity=-0.015 Sum_probs=34.1
Q ss_pred CCcccchhhHhhhHHhhcc---CCCCCccccccCCCCCC
Q psy14051 131 QNMVNAPLNLSLNSNAVSA---NFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 131 RRTSIep~vKslLEs~F~k---nPKPSseEIT~LAe~Ln 166 (256)
|||.+++..+..||..|.. +|+|+.+++..||..++
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~g 39 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTS 39 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHC
Confidence 5789999999999999999 99999999999999887
No 65
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=95.94 E-value=0.00073 Score=46.27 Aligned_cols=34 Identities=6% Similarity=-0.163 Sum_probs=31.0
Q ss_pred cccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 133 MVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 133 TSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
|.+++..+..||..|..+++|+..++..||..++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~ 35 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALR 35 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhC
Confidence 7899999999999999999999999999999888
No 66
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.88 E-value=0.00089 Score=50.52 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=27.3
Q ss_pred hhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 138 LNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 138 ~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
..+.+|+.||..|++|+++||..||+.++
T Consensus 15 ~ql~~Lk~yF~~n~~Ps~eei~~LA~~lg 43 (71)
T 2da7_A 15 DHMSVLKAYYAMNMEPNSDELLKISIAVG 43 (71)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 45899999999999999999999999988
No 67
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=95.64 E-value=0.0019 Score=48.55 Aligned_cols=36 Identities=6% Similarity=-0.044 Sum_probs=33.2
Q ss_pred CCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 131 QNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 131 RRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
+|+.+++..+..||..|..+++|+..++..||..++
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tg 41 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITG 41 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
Confidence 455688999999999999999999999999999988
No 68
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=95.38 E-value=0.02 Score=43.93 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 8 DEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 8 ~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
.-.+++.+..|..|...|+||.+++..++ .|+++|+|
T Consensus 32 ~l~~~lG~~ir~~R~~~glTQ~eLA~~~g------vs~~~is~ 68 (101)
T 4ghj_A 32 ALAEEIGDRLKQARLNRDLTQSEVAEIAG------IARKTVLN 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHT------SCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHcC------CCHHHHHH
Confidence 34578999999999999999999999987 47999998
No 69
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=95.29 E-value=0.019 Score=41.14 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=34.5
Q ss_pred CChHHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 5 INLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 5 ~~l~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
+.-++.+.|++.+|..|...|+||.+++..++ .|+++|++
T Consensus 7 ~~~~~~~~~g~~l~~~R~~~gltq~elA~~~g------is~~~is~ 46 (86)
T 3eus_A 7 LRTPEHVYLCQRLRQARLDAGLTQADLAERLD------KPQSFVAK 46 (86)
T ss_dssp SCSHHHHHHHHHHHHHHHHTTCCHHHHHHHTT------CCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCHHHHHHHhC------cCHHHHHH
Confidence 34456678999999999999999999999987 47999988
No 70
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=94.94 E-value=0.065 Score=35.91 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 7 LDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 7 l~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
-+..+.|++.+|..|...|+||.+++..++. ..|+++|++
T Consensus 3 ~~~~~~~g~~l~~~r~~~glsq~~lA~~~g~----~is~~~i~~ 42 (71)
T 2ewt_A 3 SEYAKQLGAKLRAIRTQQGLSLHGVEEKSQG----RWKAVVVGS 42 (71)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHTTT----SSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCCHHHHHHHHCC----cCCHHHHHH
Confidence 4556789999999999999999999988753 357889987
No 71
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=94.94 E-value=0.11 Score=35.77 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 6 NLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 6 ~l~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
.-.+...|++.+|..|...|+||.+++..++ .|+++|++
T Consensus 4 ~~~~~~~~~~~l~~~r~~~glsq~~lA~~~g------is~~~i~~ 42 (84)
T 2ef8_A 4 HDHRYRCLVQLLTKLRKEASLSQSELAIFLG------LSQSDISK 42 (84)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCCHHHHHHHhC------CCHHHHHH
Confidence 3456789999999999999999999999987 46888887
No 72
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=94.78 E-value=0.023 Score=39.64 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 6 NLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 6 ~l~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
.....+.|++.+|..|...|+||.+++..++ .|+++|++
T Consensus 6 ~~~~~~~~~~~l~~~r~~~glsq~~lA~~~g------is~~~i~~ 44 (88)
T 2wiu_B 6 KIYSPTQLANAMKLVRQQNGWTQSELAKKIG------IKQATISN 44 (88)
T ss_dssp CBCSHHHHHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHcCCCHHHHHHHhC------CCHHHHHH
Confidence 3344678999999999999999999999987 46889987
No 73
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=94.76 E-value=0.043 Score=38.36 Aligned_cols=39 Identities=21% Similarity=0.464 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 6 NLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 6 ~l~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
+.++...|...+|..|-..|+||.+++..++. |+++|++
T Consensus 6 ~~~~~~~l~~~l~~~r~~~gltq~~lA~~~gv------s~~~is~ 44 (80)
T 3kz3_A 6 QLEDARRLKAIWEKKKNELGLSYESVADKMGM------GQSAVAA 44 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHTTS------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCc------CHHHHHH
Confidence 34566789999999999999999999999885 7889887
No 74
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=94.65 E-value=0.047 Score=36.65 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 7 LDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 7 l~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
.+..+.|++.+|..|...|+||.+++..++ .|+++|++
T Consensus 8 ~~~~~~~~~~l~~~r~~~g~s~~~lA~~~g------is~~~i~~ 45 (74)
T 1y7y_A 8 YADLVKFGQRLRELRTAKGLSQETLAFLSG------LDRSYVGG 45 (74)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHH
Confidence 456789999999999999999999999987 46888887
No 75
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=94.51 E-value=0.005 Score=44.69 Aligned_cols=36 Identities=14% Similarity=0.007 Sum_probs=30.2
Q ss_pred CCcccchhhHhhhHHhh-ccCCCCCccccccCCCCCC
Q psy14051 131 QNMVNAPLNLSLNSNAV-SANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 131 RRTSIep~vKslLEs~F-~knPKPSseEIT~LAe~Ln 166 (256)
+|+.+++..+..||.+| ..+++|+..++..||..++
T Consensus 11 ~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~ 47 (72)
T 2cqx_A 11 DSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLD 47 (72)
T ss_dssp CCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC
Confidence 33444455688899999 9999999999999999998
No 76
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=94.29 E-value=0.08 Score=36.73 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 8 DEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 8 ~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
++...|++.+|..|...|+||.+++..++. |+++|++
T Consensus 10 ~~~~~~~~~l~~~R~~~gltq~elA~~~gi------s~~~is~ 46 (83)
T 3f6w_A 10 ARYQALLDLLLEARSAAGITQKELAARLGR------PQSFVSK 46 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHTS------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHH
Confidence 466789999999999999999999999874 6889987
No 77
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.18 E-value=0.0067 Score=45.49 Aligned_cols=32 Identities=6% Similarity=0.072 Sum_probs=30.5
Q ss_pred cchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 135 NAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 135 Iep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
+++..+..||..|..+++|+..++..||..++
T Consensus 20 ~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~ 51 (89)
T 2dmp_A 20 KTQGQVKILEDSFLKSSFPTQAELDRLRVETK 51 (89)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHccCCCCCHHHHHHHHHHhC
Confidence 78999999999999999999999999999887
No 78
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=93.69 E-value=0.088 Score=36.54 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 8 DEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 8 ~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
+..+.|++.+|..|...|+||.+++..++. |+++|++
T Consensus 7 ~~~~~~g~~lk~~R~~~glsq~~lA~~~gi------s~~~i~~ 43 (82)
T 3s8q_A 7 FLLSKVSFVIKKIRLEKGMTQEDLAYKSNL------DRTYISG 43 (82)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHTC------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhCc------CHHHHHH
Confidence 456789999999999999999999999864 7889887
No 79
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=93.53 E-value=0.11 Score=35.17 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 9 EIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 9 el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
-.+.|++.+|..|...|+||.+++..++ .|+++|++
T Consensus 7 ~~~~~~~~l~~~r~~~glsq~~lA~~~g------is~~~i~~ 42 (77)
T 2b5a_A 7 IKRKFGRTLKKIRTQKGVSQEELADLAG------LHRTYISE 42 (77)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHC------CCHHHHHH
Confidence 3567999999999999999999999986 46888887
No 80
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=93.29 E-value=0.098 Score=36.85 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=29.7
Q ss_pred HHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 12 EFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 12 ~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
.|...+|..|...|+||.+++..++. |+++|++
T Consensus 10 ~~~~~ik~~R~~~gltq~elA~~~gi------s~~~is~ 42 (78)
T 3qq6_A 10 MIGQRIKQYRKEKGYSLSELAEKAGV------AKSYLSS 42 (78)
T ss_dssp THHHHHHHHHHHTTCCHHHHHHHHTC------CHHHHHH
T ss_pred CccHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHH
Confidence 48899999999999999999999874 7899987
No 81
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=93.12 E-value=0.19 Score=36.13 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 8 DEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 8 ~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
+....|++.+|..|...|+||.+++..++ .|+++|++
T Consensus 5 ~~~~~~~~~lk~~r~~~glsq~~lA~~~g------is~~~is~ 41 (94)
T 2kpj_A 5 KQKAIFSENLNSYIAKSEKTQLEIAKSIG------VSPQTFNT 41 (94)
T ss_dssp HHHHHHHHHHHHHHTTSSSCHHHHHHHHT------CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHH
Confidence 45678999999999999999999999987 46889987
No 82
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=93.04 E-value=0.16 Score=34.38 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 11 KEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 11 ~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
..|++.+|..|...|+||.+++..++ .|+++|++
T Consensus 6 ~~~~~~l~~~r~~~g~sq~~lA~~~g------is~~~i~~ 39 (78)
T 3b7h_A 6 EFVSEHLMELITQQNLTINRVATLAG------LNQSTVNA 39 (78)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHH
Confidence 57899999999999999999999987 46888887
No 83
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=92.97 E-value=0.12 Score=38.37 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 8 DEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 8 ~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
+-.+.|++.+|..|...|+||.+++..++ .|+++|++
T Consensus 24 ~~~~~ig~~lr~~R~~~gltq~elA~~~g------is~~~is~ 60 (99)
T 3g5g_A 24 FLLSKVSFVIKKIRLEKGMTQEDLAYKSN------LDRTYISG 60 (99)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHH
Confidence 45678999999999999999999999986 46889887
No 84
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=92.85 E-value=0.16 Score=35.78 Aligned_cols=37 Identities=19% Similarity=0.444 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 8 DEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 8 ~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
...+.+.+.+|..|...|+||.+++..++ .|+++|++
T Consensus 13 ~~~~~l~~~l~~~R~~~glsq~~lA~~~g------is~~~is~ 49 (92)
T 1lmb_3 13 EDARRLKAIYEKKKNELGLSQESVADKMG------MGQSGVGA 49 (92)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHT------SCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHH
Confidence 34456666777778999999999999987 46889987
No 85
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=92.55 E-value=0.13 Score=34.55 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=29.6
Q ss_pred HHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 11 KEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 11 ~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
+.|++.+|..|...|+||.+++..++ .|+++|++
T Consensus 4 ~~~~~~l~~~r~~~gls~~~lA~~~g------is~~~i~~ 37 (76)
T 1adr_A 4 QLMGERIRARRKKLKIRQAALGKMVG------VSNVAISQ 37 (76)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHT------SCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHH
Confidence 35888999999999999999999987 56888887
No 86
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=92.37 E-value=0.18 Score=39.58 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHHHhhh-hccC-cchhHHhhhhhcccCCCCcchhhhh
Q psy14051 5 INLDEIKEFAKAFKLRR-LSLG-LTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 5 ~~l~el~~FAk~FK~rR-l~LG-lTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
-+.+|.+.++..|..-+ +.-| .||.+|...||+ |.+||+|
T Consensus 36 LT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGi------S~stISR 77 (101)
T 1jhg_A 36 LTPDEREALGTRVRIIEELLRGEMSQRELKNELGA------GIATITR 77 (101)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCC------CHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCC------ChhhhhH
Confidence 46788888998888876 4447 999999999986 7999999
No 87
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=92.26 E-value=0.21 Score=35.50 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=30.2
Q ss_pred HHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 11 KEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 11 ~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
..|++.+|..|...|+||.+++..++ .|+++|++
T Consensus 12 ~~~~~~l~~~r~~~glsq~~lA~~~g------is~~~is~ 45 (91)
T 1x57_A 12 LEVGKVIQQGRQSKGLTQKDLATKIN------EKPQVIAD 45 (91)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHT------SCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHH
Confidence 36899999999999999999999986 57899987
No 88
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=91.99 E-value=0.11 Score=34.50 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=29.1
Q ss_pred HHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 12 EFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 12 ~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
.|++.+|..|...|+||.+++..++ .|+++|++
T Consensus 3 ~~~~~l~~~r~~~glsq~~lA~~~g------is~~~i~~ 35 (71)
T 1zug_A 3 TLSERLKKRRIALKMTQTELATKAG------VKQQSIQL 35 (71)
T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHT------SCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhC------CCHHHHHH
Confidence 5788999999999999999999986 56888887
No 89
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=91.60 E-value=0.33 Score=36.24 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 9 EIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 9 el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
-.+.|++.+|..|...|+||.+++..++. |+++|++
T Consensus 18 ~~~~~g~~lr~~R~~~gltq~elA~~~gi------s~~~is~ 53 (114)
T 3vk0_A 18 LRAVLAYNMRLFRVNKGWSQEELARQCGL------DRTYVSA 53 (114)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTC------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHH
Confidence 34679999999999999999999999874 7889887
No 90
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.46 E-value=0.029 Score=39.88 Aligned_cols=31 Identities=16% Similarity=0.120 Sum_probs=28.7
Q ss_pred chhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 136 APLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 136 ep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
....+..||.+|..+++|+..++..||..++
T Consensus 11 ~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~ 41 (64)
T 2e19_A 11 LKNLLSLLKAYYALNAQPSAEELSKIADSVN 41 (64)
T ss_dssp CHHHHHHHHHHHTTCSSCCHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC
Confidence 4678899999999999999999999999887
No 91
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=91.41 E-value=0.41 Score=33.75 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=33.4
Q ss_pred ChHHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 6 NLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 6 ~l~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
.......|++.+|..|...|+||.+++..++. |+++|++
T Consensus 12 ~~~~~~~~~~~l~~~r~~~glsq~elA~~~gi------s~~~is~ 50 (83)
T 2a6c_A 12 HMKMRSQLLIVLQEHLRNSGLTQFKAAELLGV------TQPRVSD 50 (83)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCHHHHHHHHTS------CHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHH
Confidence 34556789999999999999999999999874 6899987
No 92
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=91.27 E-value=0.21 Score=32.74 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 11 KEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 11 ~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
+.|++.+|..|...|+||.+++..++ .|+++|++
T Consensus 4 ~~~~~~l~~~r~~~g~s~~~lA~~~g------is~~~i~~ 37 (68)
T 2r1j_L 4 QLMGERIRARRKKLKIRQAALGKMVG------VSNVAISQ 37 (68)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHT------SCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHC------CCHHHHHH
Confidence 35888999999999999999999987 46788887
No 93
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=91.06 E-value=0.13 Score=35.81 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=26.3
Q ss_pred HHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 14 AKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 14 Ak~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
++.+|..|..+|+||.+++..++. |+++|++
T Consensus 13 g~~lr~~R~~~gltq~elA~~~gv------s~~tis~ 43 (73)
T 3fmy_A 13 PEFIVKVRKKLSLTQKEASEIFGG------GVNAFSR 43 (73)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHCS------CTTHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCc------CHHHHHH
Confidence 456777789999999999999874 6889988
No 94
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=91.05 E-value=0.24 Score=36.58 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=29.5
Q ss_pred HHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 12 EFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 12 ~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
.|++.+|..|...|+||.+++..++. |+++|++
T Consensus 9 ~~~~~l~~~r~~~glsq~~lA~~~gi------s~~~i~~ 41 (114)
T 3op9_A 9 QFAENLSRLKKEHGLKNHQIAELLNV------QTRTVAY 41 (114)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTS------CHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHH
Confidence 48899999999999999999999874 7899987
No 95
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=90.99 E-value=0.16 Score=33.47 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=28.2
Q ss_pred HHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 13 FAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 13 FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
|++.+|..|...|+||.+++..++ .|+++|++
T Consensus 2 ~~~~l~~~r~~~glsq~~lA~~~g------is~~~i~~ 33 (69)
T 1r69_A 2 ISSRVKSKRIQLGLNQAELAQKVG------TTQQSIEQ 33 (69)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHT------SCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHH
Confidence 788899999999999999999986 46888877
No 96
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=90.84 E-value=0.19 Score=38.82 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 8 DEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 8 ~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
+.+..|++.+|..|...|+||.+|+..++ .|+++|++
T Consensus 3 ~~~~~lG~~Lr~~R~~~glSq~eLA~~~g------is~~~is~ 39 (112)
T 2wus_R 3 EKWKELGETFRKKREERRITLLDASLFTN------INPSKLKR 39 (112)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHSS------CCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHH
Confidence 46788999999999999999999999886 46777776
No 97
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=90.73 E-value=0.27 Score=38.14 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 10 IKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 10 l~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
...|+..+|..|...|+||.+++..++ .||++|++
T Consensus 38 ~~~lg~~L~~~R~~~glTQ~eLA~~lG------is~~~Is~ 72 (120)
T 2o38_A 38 KLRLAYALNAVIDRARLSQAAAAARLG------INQPKVSA 72 (120)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHH
Confidence 356888999999999999999999987 47999988
No 98
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=90.50 E-value=0.15 Score=37.21 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=27.8
Q ss_pred HHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 12 EFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 12 ~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
.|++.+|..|...|+||.+++..++ .|+++|++
T Consensus 30 ~~~~~lk~~R~~~glsq~elA~~lg------vs~~~is~ 62 (99)
T 2ppx_A 30 PRMPRIKIIRRALKLTQEEFSARYH------IPLGTLRD 62 (99)
T ss_dssp --CCHHHHHHHHTTCCHHHHHHHHT------CCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhC------cCHHHHHH
Confidence 5778899999999999999999987 46899987
No 99
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=90.46 E-value=0.27 Score=37.06 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 8 DEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 8 ~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
-+...|++.+|..|...|+||.+++..++ .|+++|++
T Consensus 8 ~~~~~~g~~lk~~R~~~glsq~~lA~~~g------is~~~is~ 44 (126)
T 3ivp_A 8 YDFRALGLAIKEARKKQGLTREQVGAMIE------IDPRYLTN 44 (126)
T ss_dssp CCTHHHHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCCHHHHHHHhC------cCHHHHHH
Confidence 34567999999999999999999999986 46889987
No 100
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=90.23 E-value=0.029 Score=41.48 Aligned_cols=31 Identities=6% Similarity=-0.011 Sum_probs=28.3
Q ss_pred chhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 136 APLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 136 ep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
+-..+..||..|..+++||..|+..||..++
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tg 42 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTG 42 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 3478889999999999999999999999887
No 101
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=90.20 E-value=0.4 Score=35.52 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 9 EIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 9 el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
-.+.|++.+|..|...|+||.+++..++. |+++|++
T Consensus 25 ~~~~~g~~l~~~R~~~glsq~~lA~~~gi------s~~~is~ 60 (117)
T 3f52_A 25 LREALGAALRSFRADKGVTLRELAEASRV------SPGYLSE 60 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHTTS------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHH
Confidence 34589999999999999999999999874 7899987
No 102
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=90.16 E-value=0.051 Score=39.51 Aligned_cols=32 Identities=9% Similarity=-0.078 Sum_probs=30.0
Q ss_pred cchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 135 NAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 135 Iep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
.++..+..||..|..+++|+..++..||..++
T Consensus 11 ~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~ 42 (69)
T 2l9r_A 11 MSHTQVIELERKFSHQKYLSAPERAHLAKNLK 42 (69)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 47788999999999999999999999999998
No 103
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=89.64 E-value=0.063 Score=40.97 Aligned_cols=33 Identities=6% Similarity=-0.037 Sum_probs=30.9
Q ss_pred ccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 134 VNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 134 SIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
.++...+..||..|..+++|+..++..||..++
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lg 49 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTK 49 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC
Confidence 568889999999999999999999999999887
No 104
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=89.60 E-value=0.22 Score=35.51 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=27.9
Q ss_pred HHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 13 FAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 13 FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
|++.+|..|...|+||.+++..++ .|+++|++
T Consensus 5 ~~~~l~~~r~~~gltq~~lA~~~g------is~~~is~ 36 (99)
T 2l49_A 5 ISEKIVLMRKSEYLSRQQLADLTG------VPYGTLSY 36 (99)
T ss_dssp TTHHHHHHHHHTTCCHHHHHHHHC------CCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHH
Confidence 677888999999999999999886 46889987
No 105
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=89.39 E-value=0.23 Score=34.20 Aligned_cols=32 Identities=25% Similarity=0.590 Sum_probs=28.0
Q ss_pred HHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 13 FAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 13 FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
|++.+|..|...|+||.+++..++ .|+++|++
T Consensus 3 ~~~~lk~~r~~~glsq~~lA~~~g------is~~~i~~ 34 (77)
T 2k9q_A 3 LSNELKVERIRLSLTAKSVAEEMG------ISRQQLCN 34 (77)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHT------SCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhC------CCHHHHHH
Confidence 678899999999999999999887 46888887
No 106
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=88.88 E-value=0.94 Score=33.26 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=28.0
Q ss_pred HHHHHHHh-hhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 12 EFAKAFKL-RRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 12 ~FAk~FK~-rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
.|++.+|. .|...|+||.+++..++. |+++|++
T Consensus 10 ~~g~~l~~~~r~~~glsq~~lA~~~gi------s~~~is~ 43 (113)
T 2eby_A 10 TPGDILLYEYLEPLDLKINELAELLHV------HRNSVSA 43 (113)
T ss_dssp CHHHHHHHHTTTTTTCCHHHHHHHHTS------CHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHH
Confidence 47888887 899999999999999874 6788876
No 107
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=88.84 E-value=0.59 Score=37.27 Aligned_cols=37 Identities=22% Similarity=0.135 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 8 DEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 8 ~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
+-...|++.+|..|...|+||.+++..++ .|+++|++
T Consensus 7 ~~~~~~~~~l~~~r~~~gltq~~lA~~~g------is~~~is~ 43 (192)
T 1y9q_A 7 MFKSQIANQLKNLRKSRGLSLDATAQLTG------VSKAMLGQ 43 (192)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHS------SCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHH
Confidence 34567999999999999999999999886 57889887
No 108
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=88.64 E-value=0.43 Score=34.47 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=27.8
Q ss_pred HHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 13 FAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 13 FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
|++.+|..|...|+||.+++..++. |+++|++
T Consensus 2 ~~~~l~~~r~~~gltq~~lA~~~gi------s~~~i~~ 33 (111)
T 1b0n_A 2 IGQRIKQYRKEKGYSLSELAEKAGV------AKSYLSS 33 (111)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHTC------CHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHH
Confidence 5678899999999999999999874 6888887
No 109
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=88.41 E-value=0.6 Score=35.52 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=24.4
Q ss_pred HHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 16 AFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 16 ~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
.+|.-|-.+|+||.+++..++. |+++|+|
T Consensus 75 ~l~~~R~~~glsq~~la~~~g~------s~~~i~~ 103 (133)
T 3o9x_A 75 FIVKVRKKLSLTQKEASEIFGG------GVNAFSR 103 (133)
T ss_dssp HHHHHHHHTTCCHHHHHHHHCS------CTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCC------CHHHHHH
Confidence 3566688999999999999874 6889988
No 110
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=88.06 E-value=1.3 Score=32.15 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=28.2
Q ss_pred HHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 12 EFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 12 ~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
.+++.+|..|...|+||.+++..++. |+++|++
T Consensus 18 ~~g~~l~~~r~~~gltq~~lA~~~gi------s~~~is~ 50 (104)
T 3cec_A 18 HPGEVIADILDDLDINTANFAEILGV------SNQTIQE 50 (104)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTS------CHHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHH
Confidence 46778888899999999999999874 6888887
No 111
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=87.97 E-value=0.57 Score=38.35 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=28.6
Q ss_pred HHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 11 KEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 11 ~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
+.|.+.+|..|...|+||.+++..+ .|+++|+|
T Consensus 4 ~~~g~~i~~~R~~~~~tq~~la~~~-------~s~~~~s~ 36 (293)
T 3u3w_A 4 EKLGSEIKKIRVLRGLTQKQLSENI-------CHQSEVSR 36 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHTTT-------SCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHh-------CCHHHHHH
Confidence 4688999999999999999998764 47888887
No 112
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=86.95 E-value=0.089 Score=37.37 Aligned_cols=33 Identities=6% Similarity=0.090 Sum_probs=29.2
Q ss_pred ccchhhHhhhHHhhc---cCCCCCccccccCCCCCC
Q psy14051 134 VNAPLNLSLNSNAVS---ANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 134 SIep~vKslLEs~F~---knPKPSseEIT~LAe~Ln 166 (256)
.|+...+..|+..|. .+|+|+..+...||..++
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~ 39 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTG 39 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhC
Confidence 478889999999999 999999999999998887
No 113
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=86.42 E-value=0.86 Score=34.04 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhh--ccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 11 KEFAKAFKLRRL--SLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 11 ~~FAk~FK~rRl--~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
..|++.+|..|. ..|+||.+++..++. |+++|++
T Consensus 33 ~~~g~~lk~~R~~~~~glsq~elA~~~gi------s~~~is~ 68 (107)
T 2jvl_A 33 KEVGKAIEQGRQKFEPTMTQAELGKEIGE------TAATVAS 68 (107)
T ss_dssp HHHHHHHHHHHTTSSSCCCHHHHHHHHTC------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHH
Confidence 468999999999 999999999999874 6889987
No 114
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=86.28 E-value=0.094 Score=39.72 Aligned_cols=39 Identities=31% Similarity=0.319 Sum_probs=31.1
Q ss_pred ChHHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 6 NLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 6 ~l~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
|.+-...+++.+|..|...|+||.+++..++ .|+++|++
T Consensus 17 n~~~~~~~g~~Lk~~R~~~gltq~elA~~~g------is~~~is~ 55 (111)
T 3mlf_A 17 NLYFQSNAMKTLKELRTDYGLTQKELGDLFK------VSSRTIQN 55 (111)
T ss_dssp TTSCCCSSCEEHHHHHHHTTCCHHHHHHHHT------SCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHH
Confidence 3333445677788999999999999999986 47899987
No 115
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=86.04 E-value=0.19 Score=32.71 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=24.8
Q ss_pred HHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 15 KAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 15 k~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
+.+|..|...|+||.+++..++ .|+++|++
T Consensus 4 ~~l~~~r~~~g~s~~~lA~~~g------is~~~i~~ 33 (66)
T 2xi8_A 4 NNLKLIREKKKISQSELAALLE------VSRQTING 33 (66)
T ss_dssp ECHHHHHHHTTCCHHHHHHHHT------SCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHC------cCHHHHHH
Confidence 4567778889999999999987 46888887
No 116
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=85.89 E-value=0.67 Score=33.44 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=27.2
Q ss_pred HHHHHHhhhhccCcchhHHhhhhhcccCCCCcchh----hhh
Q psy14051 13 FAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSA----ICS 50 (256)
Q Consensus 13 FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQst----ICR 50 (256)
|++.+|..|...|+||.+++..++ .|+++ |++
T Consensus 2 ~g~~lk~~R~~~glsq~~lA~~~g------is~~~~~~~is~ 37 (98)
T 3lfp_A 2 LIRRLKDARLRAGISQEKLGVLAG------IDEASASARMNQ 37 (98)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHTT------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhC------CCcchhhhHHHH
Confidence 567889999999999999999986 46777 776
No 117
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=85.67 E-value=0.35 Score=38.36 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 10 IKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 10 l~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
+..|++.+|..|...|+||.+++..++ .|+++|+|
T Consensus 66 ~~~~g~~L~~~R~~~glTq~elA~~lG------is~s~is~ 100 (141)
T 3kxa_A 66 LKAGGETFVSLRMKKGFTQSELATAAG------LPQPYLSR 100 (141)
T ss_dssp HHHSSCCHHHHHHHTTCCHHHHHHHTT------CCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHH
Confidence 334455667789999999999999887 47899988
No 118
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=84.63 E-value=0.34 Score=37.76 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 11 KEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 11 ~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
+.|.+..|..|...|+||.+++..++. |+++|++
T Consensus 2 ~~~G~~lr~~R~~~gltq~elA~~~gi------s~~~is~ 35 (130)
T 3fym_A 2 KTVGEALKGRRERLGMTLTELEQRTGI------KREMLVH 35 (130)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHCC------CHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHH
Confidence 358889999999999999999999864 6788876
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=84.61 E-value=0.6 Score=38.19 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=28.6
Q ss_pred HHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 11 KEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 11 ~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
..|.+.+|..|...|+||.+++..+ .|+++|+|
T Consensus 4 ~~~g~~i~~~r~~~~~tq~~la~~~-------~s~~~is~ 36 (293)
T 2qfc_A 4 EKLGSEIKKIRVLRGLTQKQLSENI-------CHQSEVSR 36 (293)
T ss_dssp HHHHHHHHHHHHHHTCCTTTTTTTT-------SCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH-------cCHHHHHH
Confidence 4689999999999999999998764 47888887
No 120
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=84.60 E-value=1.2 Score=35.54 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 9 EIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 9 el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
....|++.+|..|...|+||.+++..++ .|+++|++
T Consensus 7 ~~~~~g~~l~~~r~~~g~s~~~la~~~g------is~~~ls~ 42 (198)
T 2bnm_A 7 ASTGFAELLKDRREQVKMDHAALASLLG------ETPETVAA 42 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHH
Confidence 4567999999999999999999999986 47889987
No 121
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=84.14 E-value=0.4 Score=32.25 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=27.1
Q ss_pred HHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 13 FAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 13 FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
|++.+|..|...|+||.+++..++ .|+++|++
T Consensus 11 ~~~~l~~~r~~~g~s~~~lA~~~g------is~~~i~~ 42 (76)
T 3bs3_A 11 MLNRIKVVLAEKQRTNRWLAEQMG------KSENTISR 42 (76)
T ss_dssp CCBCHHHHHHHTTCCHHHHHHHHT------CCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHH
Confidence 566788889999999999999987 46888887
No 122
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=82.26 E-value=2.8 Score=29.66 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=27.7
Q ss_pred HHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 12 EFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 12 ~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
.+++.+|..|-..|+||.+++..++. |+++|++
T Consensus 8 ~~g~~l~~~r~~~gltq~~lA~~~gi------s~~~is~ 40 (94)
T 2ict_A 8 RPGDIIQESLDELNVSLREFARAMEI------APSTASR 40 (94)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTC------CHHHHHH
T ss_pred ChhHHHHHHHHHcCCCHHHHHHHhCC------CHHHHHH
Confidence 36778888899999999999999874 6888877
No 123
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=82.09 E-value=1.8 Score=35.40 Aligned_cols=35 Identities=20% Similarity=0.418 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 10 IKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 10 l~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
...|.+.+|..|-..|+||.+++..++ .|+++|.+
T Consensus 15 ~~~~~~~l~~~r~~~g~t~~~lA~~~g------is~~~i~~ 49 (236)
T 3bdn_A 15 ARRLKAIYEKKKNELGLSQESVADKMG------MGQSGVGA 49 (236)
T ss_dssp HHHHHHHHHHHTTTTTCCSHHHHHHHT------SCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHH
Confidence 347999999999999999999999986 47899887
No 124
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=82.08 E-value=1.6 Score=32.30 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=25.5
Q ss_pred HHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 15 KAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 15 k~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
+.+|..|...|+||.+++..++. |+++|++
T Consensus 27 ~rLk~lR~~~glTq~eLA~~~Gi------S~~tis~ 56 (88)
T 3t76_A 27 NKLWKLLIDRDMKKGELREAVGV------SKSTFAK 56 (88)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTC------CHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCc------CHHHHHH
Confidence 56777888999999999999874 6888887
No 125
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=81.38 E-value=1.6 Score=29.48 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=26.0
Q ss_pred HHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 13 FAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 13 FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
+.+.+|..|...|+||.+++..++ .|+++|++
T Consensus 9 ~~~~l~~~r~~~glsq~~lA~~~g------is~~~is~ 40 (73)
T 3omt_A 9 IFNRLKSVLAEKGKTNLWLTETLD------KNKTTVSK 40 (73)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHTT------CCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHH
Confidence 344567778889999999999987 47889987
No 126
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain, transcription; 2.25A {Enterococcus faecalis} SCOP: a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A 2grl_A 2grm_A
Probab=80.63 E-value=0.86 Score=39.97 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=27.2
Q ss_pred HHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 12 EFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 12 ~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
.+++.+|..|...|+||.+++..+ .|+++|+|
T Consensus 3 ~ig~~lk~~R~~~gltq~~la~~~-------is~~~is~ 34 (317)
T 2awi_A 3 KIGSVLKQIRQELNYHQIDLYSGI-------MSKSVYIK 34 (317)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHTTT-------SCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHh-------cCHHHHHH
Confidence 367899999999999999998643 67888887
No 127
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=80.17 E-value=0.14 Score=44.74 Aligned_cols=39 Identities=5% Similarity=0.065 Sum_probs=35.8
Q ss_pred ccCCCcccchhhHhhhHHhhccCCCCCccccccCCCCCC
Q psy14051 128 SQNQNMVNAPLNLSLNSNAVSANFHPNVNPRTDLKNPSA 166 (256)
Q Consensus 128 KRKRRTSIep~vKslLEs~F~knPKPSseEIT~LAe~Ln 166 (256)
.++-|+.++...+..||+.|..+++|+..++.+||..++
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~ 403 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCG 403 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHT
T ss_pred hhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHC
Confidence 366778899999999999999999999999999999887
No 128
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=78.78 E-value=0.24 Score=35.92 Aligned_cols=30 Identities=10% Similarity=0.047 Sum_probs=25.6
Q ss_pred hhHhhhHHhh-ccCCCCCccccccCCCCCCC
Q psy14051 138 LNLSLNSNAV-SANFHPNVNPRTDLKNPSAG 167 (256)
Q Consensus 138 ~vKslLEs~F-~knPKPSseEIT~LAe~Lns 167 (256)
..+..||++| ..+.+|+..++.+||..|+-
T Consensus 10 ~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~L 40 (64)
T 1x2m_A 10 QPNAILEKVFTAITKHPDEKRLEGLSKQLDW 40 (64)
T ss_dssp CHHHHHHHHHHTTCSSCCHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC
Confidence 3477899999 56888999999999999883
No 129
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=76.79 E-value=3.4 Score=31.12 Aligned_cols=32 Identities=6% Similarity=0.110 Sum_probs=25.8
Q ss_pred HHHHHHh-hhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 13 FAKAFKL-RRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 13 FAk~FK~-rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
..+.+|. .|-..|+||.+++..++. |+++|++
T Consensus 14 pG~~Lk~~lr~~~gltq~eLA~~lGi------s~~~is~ 46 (104)
T 3trb_A 14 PGEILAEELGFLDKMSANQLAKHLAI------PTNRVTA 46 (104)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHTS------CHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHH
Confidence 3556775 588899999999999874 7888887
No 130
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=75.35 E-value=3.7 Score=28.37 Aligned_cols=36 Identities=11% Similarity=0.139 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 7 LDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 7 l~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
.+..+.|++.+|..|... ||.+++..++ .|+++|++
T Consensus 11 ~~~~~~~g~~l~~~R~~~--sq~~lA~~~g------is~~~is~ 46 (86)
T 2ofy_A 11 LERGQRLGELLRSARGDM--SMVTVAFDAG------ISVETLRK 46 (86)
T ss_dssp HHHHHHHHHHHHHHHTTS--CHHHHHHHHT------CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC--CHHHHHHHhC------CCHHHHHH
Confidence 344567899998888888 9999998876 46889987
No 131
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=75.30 E-value=0.84 Score=38.60 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 8 DEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 8 ~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
++-..|.+..|..|...|+||.+++..++. |+++|++
T Consensus 26 ~~~~~~~~~l~~~r~~~g~t~~~la~~~g~------s~~~is~ 62 (311)
T 4ich_A 26 SESDELRRRVRGLIHSRPGAQREFAAAIGL------DESKLSK 62 (311)
T ss_dssp -------------------------------------------
T ss_pred CchHHHHHHHHHHHHHCCCCHHHHHHHhCC------CHHHHHH
Confidence 334579999999999999999999998874 6889987
No 132
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=68.15 E-value=2 Score=29.71 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=23.2
Q ss_pred HHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 16 AFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 16 ~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
.+|..|-..| ||.+++..++. |+++|++
T Consensus 3 ~l~~~r~~~g-sq~~lA~~lgv------s~~~is~ 30 (79)
T 3bd1_A 3 AIDIAINKLG-SVSALAASLGV------RQSAISN 30 (79)
T ss_dssp HHHHHHHHHS-SHHHHHHHHTC------CHHHHHH
T ss_pred HHHHHHHHhC-CHHHHHHHHCC------CHHHHHH
Confidence 4566778889 99999999874 6899987
No 133
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=65.89 E-value=1.3 Score=34.96 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 13 FAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 13 FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
|++.+|..|...|+||.+++..++. |+++|+|
T Consensus 2 ig~~lk~~R~~~gltq~elA~~lgi------s~~~vs~ 33 (158)
T 2p5t_A 2 IGKNIKSLRKTHDLTQLEFARIVGI------SRNSLSR 33 (158)
T ss_dssp --------------------------------------
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHH
Confidence 5678899999999999999998874 5777776
No 134
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=62.85 E-value=5.5 Score=30.75 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=36.5
Q ss_pred HHhhhhccCcchhHHhhhhhcccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhcccC--Chhh
Q psy14051 17 FKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSALATQMLCAAQIASQQQQQQQQQHQQQQQQQNTMFEKLDI--TPKS 94 (256)
Q Consensus 17 FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FEkLdl--s~kn 94 (256)
-|.+++.-|++|.+++...+. ||+||+. .|+=.. |+.
T Consensus 24 ~kLK~il~GikQ~eLAK~iGI------sqsTLSa----------------------------------IenG~~~PsL~- 62 (83)
T 2l1p_A 24 NALKDLLKDMNQSSLAKECPL------SQSMISS----------------------------------IVNSTYYANVS- 62 (83)
T ss_dssp HHHHHHHTTSCHHHHHHHSSS------CHHHHHH----------------------------------HHTCSSCCCCC-
T ss_pred HHHHHHHHhcCHHHHHHHcCC------CHHHHHH----------------------------------HHcCCCCCCch-
Confidence 355555559999999888764 6899886 443332 222
Q ss_pred hhhhhHHHHHHHHHHH
Q psy14051 95 AQKIKPVLERWMKEAE 110 (256)
Q Consensus 95 a~KlkPvLekWL~EAE 110 (256)
.+|--+|.+|.++-.
T Consensus 63 -~kIAk~fg~w~~~~~ 77 (83)
T 2l1p_A 63 -AAKCQEFGRWYKHFK 77 (83)
T ss_dssp -SHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHH
Confidence 688889999998754
No 135
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=61.90 E-value=6.7 Score=31.31 Aligned_cols=39 Identities=13% Similarity=0.303 Sum_probs=32.8
Q ss_pred ChHHHHHHHHHHHhhhh-ccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 6 NLDEIKEFAKAFKLRRL-SLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 6 ~l~el~~FAk~FK~rRl-~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
..+|++.++..++..++ .-|.|+.++...+|+ |-+||+|
T Consensus 38 T~~E~~alaqR~~Ia~lL~~G~SyreIa~~tG~------StaTIsR 77 (107)
T 3frw_A 38 TINELLSLSQRFEVAKMLTDKRTYLDISEKTGA------STATISR 77 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCC------CHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCc------cHHHHHH
Confidence 46899999999988765 349999999888775 6789998
No 136
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=61.43 E-value=5.2 Score=35.89 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhhc------cCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 11 KEFAKAFKLRRLS------LGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 11 ~~FAk~FK~rRl~------LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
+.|.+..|..|.. .|+||.+|+..++. |+++|++
T Consensus 5 ~~lG~~Lr~lR~~~~~~~~~gLtqeelA~~~gv------S~~~is~ 44 (292)
T 3pxp_A 5 AAFGKLVQALRREHRDEKGRVWTQEVLAERTQL------PKRTIER 44 (292)
T ss_dssp HHHHHHHHHHHHTCBCTTSCBCCHHHHHHHHTC------CHHHHHH
T ss_pred HHHHHHHHHHHHccCccCcCCCCHHHHHHHHCc------CHHHHHH
Confidence 5688999999999 99999999998864 6777766
No 137
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=61.21 E-value=13 Score=29.23 Aligned_cols=37 Identities=24% Similarity=0.120 Sum_probs=28.5
Q ss_pred HHHHHHhhhh------ccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 13 FAKAFKLRRL------SLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 13 FAk~FK~rRl------~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
|++.++.-|- .-++||.+|+.+++. .|...|.++|+.
T Consensus 8 ~~~RL~~L~~~~~~~~~~~~T~~elA~~~~~-~G~~is~s~is~ 50 (135)
T 3r1f_A 8 FAARLNRLFDTVYPPGRGPHTSAEVIAALKA-EGITMSAPYLSQ 50 (135)
T ss_dssp HHHHHHHHHHHCCCTTSCCCCHHHHHHHHHT-TTCCCCHHHHHH
T ss_pred HHHHHHHHHHhhcccCCCCCCHHHHHHHHcc-cCCCcCHHHHHH
Confidence 6666655444 347999999999995 477899999986
No 138
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=60.18 E-value=4.6 Score=34.11 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=30.9
Q ss_pred CChHHHHHHHH---------HHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 5 INLDEIKEFAK---------AFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 5 ~~l~el~~FAk---------~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
++.|+|.+-++ .||.-|...||||.+++.+|+. ||++|++
T Consensus 74 iaPd~LY~~~~~~~~~~s~~~lk~lR~~~glTQ~elA~~LGv------sr~tis~ 122 (170)
T 2auw_A 74 FGRDNVYAWAKEQAGEVSHEMFGDWMHRNNLSLTTAAEALGI------SRRMVSY 122 (170)
T ss_dssp BCHHHHHHHHHHHTTCCCHHHHHHHHHHTTCCHHHHHHHHTS------CHHHHHH
T ss_pred CCHHHHHHhhhhhccCCCcHHHHHHHHHcCCCHHHHHHHhCC------CHHHHHH
Confidence 45556654443 4677799999999999999986 6899987
No 139
>4e1p_A Protein LSR2; anti-parallel beta sheet, dimer, DNA binding protein; 1.73A {Mycobacterium tuberculosis}
Probab=54.71 E-value=5.3 Score=29.08 Aligned_cols=23 Identities=26% Similarity=0.661 Sum_probs=21.0
Q ss_pred ccCChhhhhhhhHHHHHHHHHHH
Q psy14051 88 LDITPKSAQKIKPVLERWMKEAE 110 (256)
Q Consensus 88 Ldls~kna~KlkPvLekWL~EAE 110 (256)
+|||.+|+.||+-.|++|+.-+.
T Consensus 34 IDLs~~nA~~lr~~L~~yi~~ar 56 (61)
T 4e1p_A 34 IDLSTKNATKLRGDLKQWVAAGR 56 (61)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSE
T ss_pred EECCHHHHHHHHHHHHHHHHhhe
Confidence 78999999999999999998654
No 140
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=48.70 E-value=21 Score=27.79 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=21.9
Q ss_pred CcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 25 GLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 25 GlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
++||.+|+.+++. .|...|.++|+.
T Consensus 24 ~lT~~elA~~~~~-~G~~iS~s~is~ 48 (123)
T 3qwg_A 24 PHTSAEVIAALKA-EGITMSAPYLSQ 48 (123)
T ss_dssp SCCHHHHHHHHHH-TTCCCCHHHHHH
T ss_pred CCCHHHHHHHHcc-cCCCcCHHHHHH
Confidence 6999999999995 477899999986
No 141
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=46.33 E-value=3.2 Score=31.91 Aligned_cols=33 Identities=9% Similarity=0.015 Sum_probs=29.3
Q ss_pred cchhhHhhhHHhhcc---CCCCCccccccCCCCCCC
Q psy14051 135 NAPLNLSLNSNAVSA---NFHPNVNPRTDLKNPSAG 167 (256)
Q Consensus 135 Iep~vKslLEs~F~k---nPKPSseEIT~LAe~Lns 167 (256)
++......|+..|.. +|+||.+|...||..++-
T Consensus 12 l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgL 47 (89)
T 2lk2_A 12 LPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHL 47 (89)
T ss_dssp CCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSS
T ss_pred CCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCc
Confidence 567788899999987 999999999999999883
No 142
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=46.21 E-value=2.6 Score=33.79 Aligned_cols=28 Identities=7% Similarity=-0.088 Sum_probs=21.6
Q ss_pred ccCCCcccchhhHhhhHHhhccCCCCCc
Q psy14051 128 SQNQNMVNAPLNLSLNSNAVSANFHPNV 155 (256)
Q Consensus 128 KRKRRTSIep~vKslLEs~F~knPKPSs 155 (256)
.|+.||.++...+..|+..|..+|+|.-
T Consensus 136 ~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 136 GSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -----EEEECCCCEECCSSCCCCCCCCC
T ss_pred CcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 4778899999999999999999999964
No 143
>4e1r_A Protein LSR2; anti-parallel beta sheet, dimer, DNA binding protein; 2.04A {Mycobacterium tuberculosis}
Probab=45.27 E-value=8.8 Score=29.82 Aligned_cols=23 Identities=26% Similarity=0.661 Sum_probs=21.0
Q ss_pred ccCChhhhhhhhHHHHHHHHHHH
Q psy14051 88 LDITPKSAQKIKPVLERWMKEAE 110 (256)
Q Consensus 88 Ldls~kna~KlkPvLekWL~EAE 110 (256)
+|||.+|+.||+-.|++|++-|.
T Consensus 59 IDLS~~NA~kLR~aLapyI~aaR 81 (86)
T 4e1r_A 59 IDLSTKNATKLRGDLKQWVAAGR 81 (86)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSE
T ss_pred EECCHHHHHHHHHHHHHHHHhhe
Confidence 78999999999999999998654
No 144
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=43.75 E-value=21 Score=28.63 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhhccCc--chhHHhhhhhcccCCCCc-chhhhh
Q psy14051 10 IKEFAKAFKLRRLSLGL--TQTQVGQALSVTEGPAYS-QSAICS 50 (256)
Q Consensus 10 l~~FAk~FK~rRl~LGl--TQ~~Vg~aL~~~~G~ayS-QstICR 50 (256)
-++|.+..|..|-..|+ ||.+++.+++. | ++||.+
T Consensus 8 q~~i~~~i~~~~~~~g~~ps~~elA~~lgi------ss~~tv~~ 45 (202)
T 1jhf_A 8 QQEVFDLIRDHISQTGMPPTRAEIAQRLGF------RSPNAAEE 45 (202)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHTTC------SSHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCccHHHHHHHhCC------CChHHHHH
Confidence 35788888888888999 99999999874 4 888876
No 145
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=36.28 E-value=22 Score=23.28 Aligned_cols=27 Identities=33% Similarity=0.309 Sum_probs=21.3
Q ss_pred HHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 17 FKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 17 FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
++..|...| ||++++..|+ .||++|++
T Consensus 6 l~~~~~~~g-s~~~~A~~lg------is~~~vs~ 32 (67)
T 2pij_A 6 LSKYLEEHG-TQSALAAALG------VNQSAISQ 32 (67)
T ss_dssp HHHHHHHTC-CHHHHHHHHT------SCHHHHHH
T ss_pred HHHHHHHcC-CHHHHHHHHC------cCHHHHHH
Confidence 344567779 9999999986 56999987
No 146
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=36.18 E-value=83 Score=24.46 Aligned_cols=28 Identities=14% Similarity=0.037 Sum_probs=19.3
Q ss_pred ccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 23 SLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 23 ~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
.-++||.+++.-....||-.-|+|||++
T Consensus 28 ~~~~~q~~la~wa~~~f~~~is~stis~ 55 (144)
T 1iuf_A 28 QNRSGQQDLIEWFREKFGKDISQPSVSQ 55 (144)
T ss_dssp SSCCCHHHHHHHHHHHHSSCCSSSSTTH
T ss_pred CCCCCHHHHHHHHHHHHCCCCcHHHHHH
Confidence 3567888888755555643467888886
No 147
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=30.43 E-value=41 Score=27.15 Aligned_cols=39 Identities=18% Similarity=0.392 Sum_probs=30.6
Q ss_pred ChHHHHHHHHHHHhhh-hccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 6 NLDEIKEFAKAFKLRR-LSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 6 ~l~el~~FAk~FK~rR-l~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
..+|++.++..++.-+ +.-|+|+.++...+++ |-.||+|
T Consensus 55 T~~E~~aLs~R~eV~klL~~G~syreIA~~~g~------S~aTIsR 94 (119)
T 3kor_A 55 TVNEIQSLSQRLQVAKMIKQGYTYATIEQESGA------STATISR 94 (119)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHCC------CHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHcCCCHHHHHHHHCC------CHHHHHH
Confidence 4578888888876554 4459999999999875 6789988
No 148
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=29.60 E-value=32 Score=23.17 Aligned_cols=21 Identities=33% Similarity=0.297 Sum_probs=17.5
Q ss_pred cCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 24 LGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 24 LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
.|.||.+++.+|++ ||++|++
T Consensus 9 ~~~tq~~lA~~lGv------s~~~Vs~ 29 (61)
T 1rzs_A 9 HFGTQRAVAKALGI------SDAAVSQ 29 (61)
T ss_dssp HHSSHHHHHHHHTC------CHHHHHH
T ss_pred HcCCHHHHHHHhCC------CHHHHHH
Confidence 35699999999985 6899987
No 149
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=28.41 E-value=40 Score=26.34 Aligned_cols=32 Identities=6% Similarity=-0.003 Sum_probs=25.6
Q ss_pred HHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 11 KEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 11 ~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
+.|.+.+|..|-.. ||.+++..++ .|+++|++
T Consensus 8 ~~~~~rl~~~r~~~--tq~elA~~~G------is~~~i~~ 39 (189)
T 2fjr_A 8 VDVLDRICEAYGFS--QKIQLANHFD------IASSSLSN 39 (189)
T ss_dssp HHHHHHHHHHHTCS--SHHHHHHHTT------CCHHHHHH
T ss_pred HHHHHHHHHHHhhc--CHHHHHHHhC------cCHHHHHH
Confidence 46788888877555 9999999986 36899987
No 150
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=25.59 E-value=44 Score=23.64 Aligned_cols=24 Identities=8% Similarity=0.260 Sum_probs=18.9
Q ss_pred hhccCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 21 RLSLGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 21 Rl~LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
+-.-|+||.+++..+| .|++||.+
T Consensus 18 l~~~glT~~~LA~~~G------vs~stls~ 41 (74)
T 1neq_A 18 LKKRKLSLSALSRQFG------YAPTTLAN 41 (74)
T ss_dssp HHTTSCCHHHHHHHHS------SCHHHHHH
T ss_pred HHHcCCCHHHHHHHHC------cCHHHHHH
Confidence 3366999999998887 46888876
No 151
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=25.04 E-value=20 Score=22.53 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=12.9
Q ss_pred ChHHHHHHHHHHHhh
Q psy14051 6 NLDEIKEFAKAFKLR 20 (256)
Q Consensus 6 ~l~el~~FAk~FK~r 20 (256)
|.+|++.|.+.||.|
T Consensus 14 nekelrdfiekfkgr 28 (28)
T 1fme_A 14 NEKELRDFIEKFKGR 28 (28)
T ss_dssp CHHHHHHHHHHCCCC
T ss_pred cHHHHHHHHHHhcCC
Confidence 678999999999864
No 152
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=24.56 E-value=66 Score=27.44 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=24.7
Q ss_pred CChHHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCCCcchhhhhH
Q psy14051 5 INLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSA 51 (256)
Q Consensus 5 ~~l~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~aySQstICR~ 51 (256)
+++.|+-.=+..+ ..-|+||.+++..||. |+++|+|.
T Consensus 8 ~sl~eiG~ria~~----y~~g~tQ~eIA~~lGi------Sr~~VSR~ 44 (192)
T 1zx4_A 8 HSIREIGLRLMRM----KNDGMSQKDIAAKEGL------SQAKVTRA 44 (192)
T ss_dssp SCHHHHHHHHHHH----HHTTCCHHHHHHHHTC------CHHHHHHH
T ss_pred ccHHHHHHHHHHH----HHcCCCHHHHHHHhCc------CHHHHHHH
Confidence 4555543333222 3578999999999875 68888884
No 153
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=24.24 E-value=52 Score=26.06 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=31.5
Q ss_pred CCChHHHHHHHHHHHhhhhccCcchhHHhhhhhcccCCC
Q psy14051 4 GINLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPA 42 (256)
Q Consensus 4 ~~~l~el~~FAk~FK~rRl~LGlTQ~~Vg~aL~~~~G~a 42 (256)
..+.+||.+||.-.+.-|. |..=.+.++-|..+||+.
T Consensus 28 ~L~~~ElqqFA~Llr~YR~--G~~I~~Fc~kLl~LyG~~ 64 (98)
T 4fqn_A 28 KLSSQEIQQFAALLHEYRN--GASIHEFCINLRQLYGDS 64 (98)
T ss_dssp TSCHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHCGG
T ss_pred hcChHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHhchH
Confidence 3468999999999988887 567788999999999974
No 154
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=23.48 E-value=45 Score=26.06 Aligned_cols=20 Identities=20% Similarity=0.399 Sum_probs=17.8
Q ss_pred CChHHHHHHHHHHHhhhhcc
Q psy14051 5 INLDEIKEFAKAFKLRRLSL 24 (256)
Q Consensus 5 ~~l~el~~FAk~FK~rRl~L 24 (256)
+|++|++.||+.++.-+=.|
T Consensus 6 ~dpeElr~Fa~~L~~F~d~L 25 (94)
T 3fx7_A 6 MDTEEVREFVGHLERFKELL 25 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 68999999999999987666
No 155
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=20.59 E-value=16 Score=27.72 Aligned_cols=21 Identities=14% Similarity=0.412 Sum_probs=17.1
Q ss_pred cCcchhHHhhhhhcccCCCCcchhhhh
Q psy14051 24 LGLTQTQVGQALSVTEGPAYSQSAICS 50 (256)
Q Consensus 24 LGlTQ~~Vg~aL~~~~G~aySQstICR 50 (256)
.|+||.+++..++. |+++|++
T Consensus 4 ~glTQ~eLA~~~Gv------s~~~is~ 24 (122)
T 1nr3_A 4 RGWSQKKIARELKT------TRQNVSA 24 (122)
T ss_dssp CSCSSCSTHHHHHH------CCSSSCC
T ss_pred cCCCHHHHHHHhCC------CHHHHHH
Confidence 79999999999986 4566665
Done!