RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14051
(256 letters)
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU
domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP:
a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A
1oct_C* 1pou_A 1pog_A 1hdp_A
Length = 160
Score = 89.3 bits (221), Expect = 2e-22
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 34/123 (27%)
Query: 3 DGINLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSALATQMLCAAQI 62
+ +L+E+++FAK FK RR+ LG TQ VG A+ G +SQ+ I
Sbjct: 2 EPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISR------------ 49
Query: 63 ASQQQQQQQQQHQQQQQQQNTMFEKLDITPKSAQKIKPVLERWMKEAEERQVMSNMPGII 122
FE L+++ K+ K+KP+LE+W+ +AE +
Sbjct: 50 ----------------------FEALNLSFKNMSKLKPLLEKWLNDAEANLSSDSSLSSP 87
Query: 123 SPP 125
S
Sbjct: 88 SAL 90
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA
complex, SOX; 2.05A {Mus musculus}
Length = 164
Score = 87.8 bits (217), Expect = 9e-22
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 3 DGINLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSALATQMLCAAQI 62
D + D++++FAK FK RR+ LG TQ VG AL G +SQ+ IC
Sbjct: 8 DAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICR------------ 55
Query: 63 ASQQQQQQQQQHQQQQQQQNTMFEKLDITPKSAQKIKPVLERWMKEAEERQVMSNMPGII 122
FE L ++ K+ K+KP+L +W++E + I
Sbjct: 56 ----------------------FEALQLSFKNMCKLKPLLNKWLEETDSSSGSPTNLDKI 93
Query: 123 SPP 125
+
Sbjct: 94 AAQ 96
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex,
helix-turn-helix (HTH), DNA-binding, homeobox, nucleus,
transcription regulation; 2.51A {Homo sapiens}
Length = 151
Score = 80.1 bits (197), Expect = 5e-19
Identities = 59/128 (46%), Positives = 70/128 (54%), Gaps = 34/128 (26%)
Query: 5 INLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSALATQMLCAAQIAS 64
IN++EI+EFAK FK+RRLSLGLTQTQVGQA++ TEGPAYSQSAI
Sbjct: 1 INMEEIREFAKNFKIRRLSLGLTQTQVGQAMTATEGPAYSQSAIS--------------- 45
Query: 65 QQQQQQQQQHQQQQQQQNTMFEKLDITPKSAQKIKPVLERWMKEAEERQVMSNMPGIISP 124
FEKLDITPKSAQK+KPVLE+W+ EAE R +
Sbjct: 46 -------------------RFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFV 86
Query: 125 PLISQNQN 132
+
Sbjct: 87 GGEPSKKR 94
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 74.3 bits (182), Expect = 7e-17
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 34/118 (28%)
Query: 7 LDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSALATQMLCAAQIASQQ 66
+ +++FA FK+RR+ LG TQT VG+AL+ G +SQ+ IC
Sbjct: 2 MRALEQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICR---------------- 45
Query: 67 QQQQQQQHQQQQQQQNTMFEKLDITPKSAQKIKPVLERWMKEAEERQVMSNMPGIISP 124
FE L ++ K+A K+K +L +W++EAE+ + N +
Sbjct: 46 ------------------FENLQLSFKNACKLKAILSKWLEEAEQVGALYNEKVGANE 85
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription
factor DNA complex, pore, stem cells; HET: DNA; 2.80A
{Mus musculus} PDB: 1ocp_A
Length = 155
Score = 70.5 bits (172), Expect = 2e-15
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 34/119 (28%)
Query: 7 LDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSALATQMLCAAQIASQQ 66
E+++FAK K +R++LG TQ VG L V G +SQ+ I
Sbjct: 9 QKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTISR---------------- 52
Query: 67 QQQQQQQHQQQQQQQNTMFEKLDITPKSAQKIKPVLERWMKEAEERQVMSNMPGIISPP 125
FE L ++ K+ K++P+LE+W++EA+ + + + +
Sbjct: 53 ------------------FEALQLSLKNMSKLRPLLEKWVEEADNNENLQEISKSETLV 93
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 2e-04
Identities = 37/306 (12%), Positives = 82/306 (26%), Gaps = 93/306 (30%)
Query: 7 LDEI-KEFAKAFKLRRL--SLGLTQTQVGQALSVTEGPAYSQSAICSALATQMLCAAQIA 63
+D I RL +L Q ++ Q V E + + S + T+
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-VEEVLRINYKFLMSPIKTE-------- 101
Query: 64 SQQQQQQQQQHQQQQ---QQQNTMFEKLDIT-PKSAQKIKPVLER--------------- 104
+Q + + +Q+ N +F K +++ + K++ L
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 105 ------------------------WMKEAEER------QVMSNMPGIISPPLISQNQNMV 134
W+ +++ + I P S++ +
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 135 NAPLNLSLNSNAVSANFHPNVNPRT-----DLKNPSAGSTLPATNMPHFILASGQLVQGI 189
N L + + +++N A F L
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA---KAWNA-----FNL--------- 264
Query: 190 QGAQLLIPTTQGITTQTILTIPVNNVTSNQPVNLALNNGQ-------VISTTIANL-QSM 241
++L+ TT+ L+ S ++ L + + +L + +
Sbjct: 265 -SCKILL-TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 242 AQPNPL 247
NP
Sbjct: 323 LTTNPR 328
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.003
Identities = 35/215 (16%), Positives = 62/215 (28%), Gaps = 87/215 (40%)
Query: 82 NTMFEKLDITPKSAQKIKPV------LERWMKEAEER---QVMSNMPGIISPPLISQNQN 132
E L ++ + V + W++ + ++P IS PLI Q
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP--ISCPLIGVIQ- 245
Query: 133 MVN----------APLNLSLNSNA--------VSA----------NFHPNVN-------- 156
+ + P L V+A +F +V
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Query: 157 ---------PRTDLKNPSA-------GSTLPATNMPHFILASGQLVQGIQGAQLLIPTTQ 200
P T L PS +P + M L+ + + Q+ Q
Sbjct: 306 IGVRCYEAYPNTSL-PPSILEDSLENNEGVP-SPM----LS----ISNLTQEQV-----Q 350
Query: 201 GITTQTILTIPVNNVTSNQPVNLALNNGQ---VIS 232
+T +P + + V ++L NG V+S
Sbjct: 351 DYVNKTNSHLP-----AGKQVEISLVNGAKNLVVS 380
Score = 28.1 bits (62), Expect = 3.6
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 219 QPVNLALNNGQ-VISTTIANLQSMAQ 243
+ VN + N Q V + + L ++
Sbjct: 1842 EIVNYNVENQQYVAAGDLRALDTVTN 1867
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein
structure initiative, midwest center for structural
genomic binding; 1.80A {Silicibacter pomeroyi}
Length = 86
Score = 31.0 bits (70), Expect = 0.078
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 1 MVDGINLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAI 48
M + E + + RL GLTQ + + L QS +
Sbjct: 3 MTKTLRTPEHVYLCQRLRQARLDAGLTQADLAERLDK------PQSFV 44
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein,
xenobiotic response E family of transcriptional
regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae
PV}
Length = 83
Score = 30.8 bits (70), Expect = 0.081
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Query: 5 INLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAI 48
I+ + R + G+TQ ++ L QS +
Sbjct: 7 IHNARYQALLDLLLEARSAAGITQKELAARLGR------PQSFV 44
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding
protein, helix-turn-H restriction-modification,
transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Length = 98
Score = 30.6 bits (69), Expect = 0.15
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 13 FAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQ 45
+ K RL G++Q ++G + E A ++
Sbjct: 2 LIRRLKDARLRAGISQEKLGVLAGIDEASASAR 34
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.22
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 62 IASQQQQQQQQQH--QQQQQQQNTMFEKLDITPKSA-----QKIKPVLERWMK---EAEE 111
IA + Q+ + + +++Q+ + ++LD K +K K LE W + E E
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRL-QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132
Query: 112 RQVMSN 117
+ ++N
Sbjct: 133 KNKINN 138
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.35.1.12
Length = 91
Score = 29.4 bits (66), Expect = 0.30
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 3 DGINLDEI-KEFAKAFKLRRLSLGLTQTQVGQALSVTE 39
G + D + E K + R S GLTQ + ++
Sbjct: 3 SGSSGDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKP 40
>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA
packaging podoviridae, virus assembly, tail tube, trunk
domain; 7.50A {Enterobacteria phage P22}
Length = 725
Score = 30.8 bits (68), Expect = 0.47
Identities = 13/88 (14%), Positives = 32/88 (36%)
Query: 54 TQMLCAAQIASQQQQQQQQQHQQQQQQQNTMFEKLDITPKSAQKIKPVLERWMKEAEERQ 113
T + +QQ +Q QQ Q Q + + ++ Q + ++ EA+ +
Sbjct: 586 TPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQAELAKAQNQTLSLQIDAAKVEAQNQL 645
Query: 114 VMSNMPGIISPPLISQNQNMVNAPLNLS 141
+ + I + +S+ ++
Sbjct: 646 NAARIAEIFNNMDLSKQSEFREFLKTVA 673
Score = 28.5 bits (62), Expect = 2.3
Identities = 11/103 (10%), Positives = 29/103 (28%), Gaps = 1/103 (0%)
Query: 12 EFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSALATQMLCAAQIASQQQQQQQ 71
A+ +L + T L + A + L + + ++Q
Sbjct: 531 NRAEILELLGKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETPEEQ 590
Query: 72 QQHQQQQQQQNTMFEKLDITPKSAQKIKPVLERWMKEAEERQV 114
Q + QQ + + + ++ E + + +
Sbjct: 591 QWLVEAQQAKQGQ-QDPAMVQAQGVLLQGQAELAKAQNQTLSL 632
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria
phage P22} SCOP: a.35.1.2
Length = 76
Score = 28.4 bits (64), Expect = 0.59
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 10 IKEFAKAFKLRRLSLGLTQTQVGQALSVT 38
+ + + RR L + Q +G+ + V+
Sbjct: 3 TQLMGERIRARRKKLKIRQAALGKMVGVS 31
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix,
DNA-binding, transcription, transcription regulation;
1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB:
3jxb_C 3jxc_L 3jxd_L
Length = 68
Score = 27.9 bits (63), Expect = 0.63
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 9 EIKEFAKAFKLRRLSLGLTQTQVGQALSVT 38
+ + + RR L + Q +G+ + V+
Sbjct: 2 NTQLMGERIRARRKKLKIRQAALGKMVGVS 31
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription
regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A
3cro_L*
Length = 71
Score = 28.0 bits (63), Expect = 0.65
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 11 KEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAI 48
+ ++ K RR++L +TQT++ V Q +I
Sbjct: 2 QTLSERLKKRRIALKMTQTELATKAGV------KQQSI 33
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane,
protein transport; 3.15A {Bordetella pertussis} PDB:
3njt_A
Length = 554
Score = 30.1 bits (67), Expect = 0.80
Identities = 7/42 (16%), Positives = 22/42 (52%)
Query: 55 QMLCAAQIASQQQQQQQQQHQQQQQQQNTMFEKLDITPKSAQ 96
Q+L A+ ++ +Q+++ Q+ ++ +++ P+S
Sbjct: 3 QLLPGARDLNRIDDRQRKEQLQRDIERALTRPPVELNPQSEA 44
Score = 29.7 bits (66), Expect = 0.88
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 60 AQIASQQQQQQQQQHQQQQQQQNTMFEKLDITP 92
AQ+ + + +Q+++Q E+ P
Sbjct: 2 AQLLPGARDLNRIDDRQRKEQLQRDIERALTRP 34
Score = 27.8 bits (61), Expect = 3.8
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 59 AAQIASQQQQQQQQQHQQQQQQQ 81
A + + + Q+++Q Q
Sbjct: 2 AQLLPGARDLNRIDDRQRKEQLQ 24
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA
binding protein, transcription regulator; HET: CME;
1.95A {Enterobacteria phage P2}
Length = 84
Score = 27.8 bits (62), Expect = 1.0
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 5 INLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAI 48
I+ + + R L+Q+++ L + SQS I
Sbjct: 3 IHDHRYRCLVQLLTKLRKEASLSQSELAIFLGL------SQSDI 40
>4ghj_A Probable transcriptional regulator; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE; 1.75A {Vibrio vulnificus}
Length = 101
Score = 28.0 bits (62), Expect = 1.1
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 10 IKEFAKAFKLRRLSLGLTQTQVGQALSVT 38
+E K RL+ LTQ++V + +
Sbjct: 34 AEEIGDRLKQARLNRDLTQSEVAEIAGIA 62
>3ivp_A Putative transposon-related DNA-binding protein; APC62618,
clostridium diffic structural genomics, PSI-2, protein
structure initiative; HET: PG4; 2.02A {Clostridium
difficile}
Length = 126
Score = 28.6 bits (64), Expect = 1.1
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 11 KEFAKAFKLRRLSLGLTQTQVGQALSVT 38
+ A K R GLT+ QVG + +
Sbjct: 11 RALGLAIKEARKKQGLTREQVGAMIEID 38
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
transcription regulat; HET: MSE; 1.90A {Listeria
innocua}
Length = 114
Score = 27.4 bits (61), Expect = 2.0
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 11 KEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQ 45
+FA+ + GL Q+ + L+V +
Sbjct: 8 HQFAENLSRLKKEHGLKNHQIAELLNVQT-RTVAY 41
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434}
SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L*
1r63_A 2r63_A 1sq8_A
Length = 69
Score = 26.4 bits (59), Expect = 2.3
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 13 FAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAI 48
+ K +R+ LGL Q ++ Q + +Q +I
Sbjct: 2 ISSRVKSKRIQLGLNQAELAQKVGT------TQQSI 31
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 28.6 bits (63), Expect = 2.3
Identities = 12/57 (21%), Positives = 18/57 (31%)
Query: 28 QTQVGQALSVTEGPAYSQSAICSALATQMLCAAQIASQQQQQQQQQHQQQQQQQNTM 84
+ G +Y Q + A + Q + Q+Q QQ Q N M
Sbjct: 27 AQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDM 83
>1vt0_M Portal protein, protein GP1; portal protein, DNA ejection,
molecular motor, DNA packaging podoviridae; 3.25A
{Enterobacteria phage P22} PDB: 3lj4_A
Length = 602
Score = 28.1 bits (61), Expect = 3.3
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 55 QMLCAAQIASQQQQQQQQQHQQQQQQQ 81
Q++ + ++QQ + QQ +Q
Sbjct: 575 QLIQMGVKKPETPEEQQWLVEAQQAKQ 601
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 27.8 bits (61), Expect = 3.3
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 9 EIKEFAKAFKLRRLSLGLTQTQV 31
+ ++ K R+ GLTQ Q+
Sbjct: 2 QAEKLGSEIKKIRVLRGLTQKQL 24
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis,
DNA binding, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Length = 118
Score = 26.7 bits (59), Expect = 4.4
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 60 AQIASQQQQQQQQQHQQQQQQQNTM 84
A+ QQ+ ++ + +N++
Sbjct: 18 AKHGDPGDAAQQEAKHREAEMRNSI 42
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 26.7 bits (60), Expect = 5.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 1 MVDGINLDEIKEFAKAFKL 19
M D + ++I EF +AF L
Sbjct: 1 MADQLTEEQIAEFKEAFSL 19
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein
fold, OPPF, STRU genomics, oxford protein production
facility; 2.80A {Neisseria gonorrhoeae}
Length = 141
Score = 26.4 bits (58), Expect = 5.9
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 7 LDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAI 48
+K + F R+ G TQ+++ A + Q +
Sbjct: 63 KIALKAGGETFVSLRMKKGFTQSELATAAGL------PQPYL 98
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional
regulator, transcription regulator; 1.69A {Aeromonas
hydrophila} SCOP: a.35.1.3
Length = 74
Score = 25.3 bits (56), Expect = 6.7
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 8 DEIKEFAKAFKLRRLSLGLTQTQ 30
++ +F + + R + GL+Q
Sbjct: 9 ADLVKFGQRLRELRTAKGLSQET 31
>2p5t_A Putative transcriptional regulator PEZA; postsegregational
killing system, phosphoryltransferase, HEL helix motif,
transcription regulator; 3.20A {Streptococcus
pneumoniae}
Length = 158
Score = 26.0 bits (57), Expect = 10.0
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 13 FAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQ 45
K K R + LTQ + + + ++ + S+
Sbjct: 2 IGKNIKSLRKTHDLTQLEFARIVGISR-NSLSR 33
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.125 0.342
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,398,460
Number of extensions: 179853
Number of successful extensions: 937
Number of sequences better than 10.0: 1
Number of HSP's gapped: 782
Number of HSP's successfully gapped: 83
Length of query: 256
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 165
Effective length of database: 4,160,982
Effective search space: 686562030
Effective search space used: 686562030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.7 bits)