RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14051
(256 letters)
>d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 75
Score = 96.4 bits (240), Expect = 1e-26
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 34/108 (31%)
Query: 3 DGINLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSALATQMLCAAQI 62
+ +L+E+++FAK FK RR+ LG TQ VG A+ G +SQ+ I
Sbjct: 2 EPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTIS------------- 48
Query: 63 ASQQQQQQQQQHQQQQQQQNTMFEKLDITPKSAQKIKPVLERWMKEAE 110
FE L+++ K+ K+KP+LE+W+ +AE
Sbjct: 49 ---------------------RFEALNLSFKNMSKLKPLLEKWLNDAE 75
>d1au7a2 a.35.1.1 (A:5-76) Pit-1 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 72
Score = 95.6 bits (238), Expect = 2e-26
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 34/105 (32%)
Query: 7 LDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSALATQMLCAAQIASQQ 66
+ +++FA FK+RR+ LG TQT VG+AL+ G +SQ+ IC
Sbjct: 2 MRALEQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICR---------------- 45
Query: 67 QQQQQQQHQQQQQQQNTMFEKLDITPKSAQKIKPVLERWMKEAEE 111
FE L ++ K+A K+K +L +W++EAE+
Sbjct: 46 ------------------FENLQLSFKNACKLKAILSKWLEEAEQ 72
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus
caldolyticus [TaxId: 1394]}
Length = 77
Score = 29.8 bits (67), Expect = 0.062
Identities = 7/38 (18%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 1 MVDGINLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVT 38
M++ I + ++F + K R G++Q ++ +
Sbjct: 1 MINEIEIK--RKFGRTLKKIRTQKGVSQEELADLAGLH 36
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller
protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Length = 69
Score = 26.3 bits (58), Expect = 0.89
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 6 NLDEIKEFAKAFKLRRLSLGLTQTQVGQ 33
+ ++ +F + + R + GL+Q +
Sbjct: 3 HYADLVKFGQRLRELRTAKGLSQETLAF 30
>d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase
8, USH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 27.5 bits (61), Expect = 0.99
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 59 AAQIASQQQQQQQQQHQQQQQQ 80
+ ++ +Q++ Q QQ++Q
Sbjct: 113 VRKKLEEKDRQEEAQRLQQKRQ 134
Score = 26.4 bits (58), Expect = 1.9
Identities = 5/26 (19%), Positives = 15/26 (57%)
Query: 54 TQMLCAAQIASQQQQQQQQQHQQQQQ 79
+ ++ + +Q++ Q+ QQ++Q
Sbjct: 109 EEAEVRKKLEEKDRQEEAQRLQQKRQ 134
Score = 25.2 bits (55), Expect = 6.0
Identities = 4/24 (16%), Positives = 14/24 (58%)
Query: 58 CAAQIASQQQQQQQQQHQQQQQQQ 81
+ +++ +Q++ + QQ++Q
Sbjct: 111 AEVRKKLEEKDRQEEAQRLQQKRQ 134
>d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 26.6 bits (59), Expect = 1.2
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 60 AQIASQQQQQQQQQHQQQQQQQNTM 84
A+ QQ+ ++ + +N++
Sbjct: 11 AKHGDPGDAAQQEAKHREAEMRNSI 35
Score = 24.7 bits (54), Expect = 6.6
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 60 AQIASQQQQQQQQQHQQQQQQQNTM 84
A++ ++ Q+ + ++ M
Sbjct: 7 AELQAKHGDPGDAAQQEAKHREAEM 31
>d1psya_ a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricinus
communis) [TaxId: 3988]}
Length = 125
Score = 26.0 bits (57), Expect = 2.5
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 52 LATQMLCAAQIASQQQQQQQQQHQQQQQQQ 81
+ + C A + Q QQ Q ++ ++
Sbjct: 73 VRDECQCEAIKYIAEDQIQQGQLHGEESER 102
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471
C-terminal domain {Nitrosomonas europaea [TaxId: 915]}
Length = 67
Score = 25.1 bits (55), Expect = 2.6
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 17 FKLRRLSLGLTQTQVGQALSVT 38
F L+ T +AL ++
Sbjct: 6 FGDWMHRNNLSLTTAAEALGIS 27
>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean
(Glycine max), glycinin A3B4 [TaxId: 3847]}
Length = 245
Score = 26.4 bits (58), Expect = 2.9
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 58 CAAQIASQQQQQQQQQHQQQQQQQ 81
C QQQ ++ + QQQ Q
Sbjct: 79 CPETFEKPQQQSSRRGSRSQQQLQ 102
Score = 25.2 bits (55), Expect = 7.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 64 SQQQQQQQQQHQQQQQQQNTMFE 86
+ QQQQQQ+ H ++Q Q+ E
Sbjct: 170 TMQQQQQQKSHGGRKQGQHQQQE 192
>g1pnb.1 a.52.1.3 (A:,B:) Napin BNIb {Rape (Brassica napus)
[TaxId: 3708]}
Length = 106
Score = 24.8 bits (54), Expect = 5.7
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 68 QQQQQQHQQQQQQQNTMFEK 87
+ + Q Q Q +++
Sbjct: 66 KSVRVQGQHGPFQSTRIYQI 85
Score = 24.0 bits (52), Expect = 9.6
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 63 ASQQQQQQQQQHQQQQQQQ 81
A++ + Q Q Q +
Sbjct: 64 AAKSVRVQGQHGPFQSTRI 82
>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean
(Glycine max), proglycinin [TaxId: 3847]}
Length = 239
Score = 25.6 bits (56), Expect = 6.6
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 58 CAAQIASQQQQQQQQQHQQQQQQQ 81
C + QQ QQ+ Q + Q +
Sbjct: 79 CPSTFEEPQQPQQRGQSSRPQDRH 102
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain
{Bacteriophage lambda [TaxId: 10710]}
Length = 87
Score = 24.3 bits (52), Expect = 6.7
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 5 INLDEIKEFAKAFKLRRLSLGLTQTQVGQA 34
L++ + ++ ++ LGL+Q V
Sbjct: 5 EQLEDARRLKAIYEKKKNELGLSQESVADK 34
>d2fnoa1 a.45.1.1 (A:88-236) Hypothetical protein
AGR_pAT_752p/Atu5508 {Agrobacterium tumefaciens [TaxId:
358]}
Length = 149
Score = 24.9 bits (54), Expect = 7.9
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 91 TPKSAQKIKPVLERWMKEAEE 111
TP+ Q+ P L++W++ +
Sbjct: 35 TPEKWQEFVPRLQKWIRIFAD 55
>d1nlsa_ b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia
ensiformis) [TaxId: 3823]}
Length = 237
Score = 24.9 bits (54), Expect = 9.0
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 210 IPVNNVTSNQPVNLALNNGQVISTTI 235
I + +V S + + NG+V + I
Sbjct: 27 IDIKSVRSKKTAKWNMQNGKVGTAHI 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.125 0.342
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 799,198
Number of extensions: 31763
Number of successful extensions: 270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 63
Length of query: 256
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,268,006
Effective search space: 219365038
Effective search space used: 219365038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.0 bits)