BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14054
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WYG|A Chain A, Crystal Structure Of A Rat Xanthine Dehydrogenase Triple
Mutant (C535a, C992r And C1324s)
Length = 1331
Score = 297 bits (760), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 139/267 (52%), Positives = 187/267 (70%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
LDRDED+++TG R+PF KYKVGF K+G + EV ++N G + DLS ++M RA+FH
Sbjct: 827 LDRDEDMLITGGRHPFLAKYKVGFMKTGTVVALEVAHFSNGGNTEDLSRSIMERALFHMD 886
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
N++ +P++R +CKTNL SNTAFR FG PQ +LIAE VA L + R N+
Sbjct: 887 NAYKIPNIRGTGRICKTNLPSNTAFRGFGGPQGMLIAEYWMSEVAITCGLPAEEVRRKNM 946
Query: 164 FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
+ G+LTH+NQ LE TL RC+++ S +Y R+++ E+FNR NR +KRG+ I+P FG
Sbjct: 947 YKEGDLTHFNQKLEGFTLPRCWDECIASSQYLARKREVEKFNRENRWKKRGLCIIPTKFG 1006
Query: 224 VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINET 283
++F FLNQ GALV +Y DGSVL++H GTEMGQG+HTKM+QVA+R L IP I I+ET
Sbjct: 1007 ISFTLPFLNQGGALVHVYTDGSVLLTHGGTEMGQGLHTKMVQVASRALKIPTSKIHISET 1066
Query: 284 ATDKVPNASPTAASVGSDLNGMAILWA 310
+T+ VPN SPTAAS +DLNG + A
Sbjct: 1067 STNTVPNTSPTAASASADLNGQGVYEA 1093
>pdb|2E1Q|A Chain A, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|B Chain B, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|C Chain C, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|D Chain D, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
Length = 1333
Score = 294 bits (752), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 138/267 (51%), Positives = 188/267 (70%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
LDRDED+++TG R+PF +YKVGF K+G + EV ++N G + DLS ++M RA+FH
Sbjct: 828 LDRDEDMLITGGRHPFLARYKVGFMKTGTVVALEVDHFSNVGNTQDLSQSIMERALFHMD 887
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
N + +P++R +CKTNL SNTAFR FG PQ +LIAE VA + + R NL
Sbjct: 888 NCYKIPNIRGTGRLCKTNLPSNTAFRGFGGPQGMLIAECWMSEVAVTCGMPAEEVRRKNL 947
Query: 164 FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
+ G+LTH+NQ LE TL RC+E+ S +Y R+ + ++FN+ N +KRG+ I+P FG
Sbjct: 948 YKEGDLTHFNQKLEGFTLPRCWEECLASSQYHARKSEVDKFNKENCWKKRGLCIIPTKFG 1007
Query: 224 VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINET 283
++F FLNQAGAL+ +Y DGSVL++H GTEMGQG+HTKM+QVA+R L IP I+I+ET
Sbjct: 1008 ISFTVPFLNQAGALLHVYTDGSVLLTHGGTEMGQGLHTKMVQVASRALKIPTSKIYISET 1067
Query: 284 ATDKVPNASPTAASVGSDLNGMAILWA 310
+T+ VPN SPTAASV +DLNG A+ A
Sbjct: 1068 STNTVPNTSPTAASVSADLNGQAVYAA 1094
>pdb|2CKJ|A Chain A, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|B Chain B, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|C Chain C, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|D Chain D, Human Milk Xanthine Oxidoreductase
Length = 1333
Score = 294 bits (752), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 138/267 (51%), Positives = 188/267 (70%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
LDRDED+++TG R+PF +YKVGF K+G + EV ++N G + DLS ++M RA+FH
Sbjct: 828 LDRDEDMLITGGRHPFLARYKVGFMKTGTVVALEVDHFSNVGNTQDLSQSIMERALFHMD 887
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
N + +P++R +CKTNL SNTAFR FG PQ +LIAE VA + + R NL
Sbjct: 888 NCYKIPNIRGTGRLCKTNLPSNTAFRGFGGPQGMLIAECWMSEVAVTCGMPAEEVRRKNL 947
Query: 164 FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
+ G+LTH+NQ LE TL RC+E+ S +Y R+ + ++FN+ N +KRG+ I+P FG
Sbjct: 948 YKEGDLTHFNQKLEGFTLPRCWEECLASSQYHARKSEVDKFNKENCWKKRGLCIIPTKFG 1007
Query: 224 VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINET 283
++F FLNQAGAL+ +Y DGSVL++H GTEMGQG+HTKM+QVA+R L IP I+I+ET
Sbjct: 1008 ISFTVPFLNQAGALLHVYTDGSVLLTHGGTEMGQGLHTKMVQVASRALKIPTSKIYISET 1067
Query: 284 ATDKVPNASPTAASVGSDLNGMAILWA 310
+T+ VPN SPTAASV +DLNG A+ A
Sbjct: 1068 STNTVPNTSPTAASVSADLNGQAVYAA 1094
>pdb|2E3T|A Chain A, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
pdb|2E3T|B Chain B, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
Length = 1331
Score = 293 bits (750), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 138/267 (51%), Positives = 186/267 (69%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
LDRDED+++TG R+PF KYKVGF K+G + EV ++N G + DLS ++M RA+FH
Sbjct: 827 LDRDEDMLITGGRHPFLAKYKVGFMKTGTVVALEVAHFSNGGNTEDLSRSIMERALFHMD 886
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
N++ +P++R +CKTNL SNTAFR FG PQ +LIAE VA L + R N+
Sbjct: 887 NAYKIPNIRGTGRICKTNLPSNTAFRGFGGPQGMLIAEYWMSEVAITCGLPAEEVRRKNM 946
Query: 164 FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
+ G+LTH+NQ LE TL RC+++ S +Y R+++ E+FNR N +KRG+ I+P FG
Sbjct: 947 YKEGDLTHFNQKLEGFTLPRCWDECIASSQYLARKREVEKFNRENCWKKRGLCIIPTKFG 1006
Query: 224 VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINET 283
++F FLNQ GALV +Y DGSVL++H GTEMGQG+HTKM+QVA+R L IP I I+ET
Sbjct: 1007 ISFTLPFLNQGGALVHVYTDGSVLLTHGGTEMGQGLHTKMVQVASRALKIPTSKIHISET 1066
Query: 284 ATDKVPNASPTAASVGSDLNGMAILWA 310
+T+ VPN SPTAAS +DLNG + A
Sbjct: 1067 STNTVPNTSPTAASASADLNGQGVYEA 1093
>pdb|3AN1|A Chain A, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
pdb|3AN1|B Chain B, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
Length = 1331
Score = 293 bits (749), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 138/267 (51%), Positives = 186/267 (69%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
LDRDED+++TG R+PF KYKVGF K+G + EV ++N G + DLS ++M RA+FH
Sbjct: 827 LDRDEDMLITGGRHPFLAKYKVGFMKTGTVVALEVAHFSNGGNTEDLSRSIMERALFHMD 886
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
N++ +P++R +CKTNL SNTAFR FG PQ +LIAE VA L + R N+
Sbjct: 887 NAYKIPNIRGTGRICKTNLPSNTAFRGFGGPQGMLIAEYWMSEVAITCGLPAEEVRRKNM 946
Query: 164 FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
+ G+LTH+NQ LE TL RC+++ S +Y R+++ E+FNR N +KRG+ I+P FG
Sbjct: 947 YKEGDLTHFNQKLEGFTLPRCWDECIASSQYLARKREVEKFNRENCWKKRGLCIIPTKFG 1006
Query: 224 VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINET 283
++F FLNQ GALV +Y DGSVL++H GTEMGQG+HTKM+QVA+R L IP I I+ET
Sbjct: 1007 ISFTLPFLNQGGALVHVYTDGSVLLTHGGTEMGQGLHTKMVQVASRALKIPTSKIHISET 1066
Query: 284 ATDKVPNASPTAASVGSDLNGMAILWA 310
+T+ VPN SPTAAS +DLNG + A
Sbjct: 1067 STNTVPNTSPTAASASADLNGQGVYEA 1093
>pdb|3UNA|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nad Bound
pdb|3UNA|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nad Bound
pdb|3UNC|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNC|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNI|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nadh Bound
pdb|3UNI|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nadh Bound
Length = 1332
Score = 288 bits (736), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 135/267 (50%), Positives = 190/267 (71%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
LDR+ED+++TG R+PF +YKVGF K+G + EV Y+NAG S DLS ++M RA+FH
Sbjct: 827 LDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMD 886
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
N + +P++R +CKTNLSSNTAFR FG PQ+L IAE VA L + N+
Sbjct: 887 NCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNM 946
Query: 164 FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
+ G+LTH+NQ LE ++ RC+++ +S +Y R+ + ++FN+ N +KRG+ I+P FG
Sbjct: 947 YKEGDLTHFNQRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKFG 1006
Query: 224 VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINET 283
++F FLNQAGAL+ +Y DGSVL+SH GTEMGQG+HTKM+QVA++ L IP I+I+ET
Sbjct: 1007 ISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISET 1066
Query: 284 ATDKVPNASPTAASVGSDLNGMAILWA 310
+T+ VPN+SPTAASV +D+ G A+ A
Sbjct: 1067 STNTVPNSSPTAASVSTDIYGQAVYEA 1093
>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1FO4|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1V97|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1V97|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1VDV|A Chain A, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|1VDV|B Chain B, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|3BDJ|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
A Covalently Bound Oxipurinol Inhibitor
pdb|3BDJ|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
A Covalently Bound Oxipurinol Inhibitor
pdb|3AM9|A Chain A, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AM9|B Chain B, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AMZ|A Chain A, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AMZ|B Chain B, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AX7|A Chain A, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX7|B Chain B, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX9|A Chain A, Bovine Xanthone Oxidase, Protease Cleaved Form
pdb|3AX9|B Chain B, Bovine Xanthone Oxidase, Protease Cleaved Form
Length = 1332
Score = 287 bits (735), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 135/267 (50%), Positives = 190/267 (71%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
LDR+ED+++TG R+PF +YKVGF K+G + EV Y+NAG S DLS ++M RA+FH
Sbjct: 827 LDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMD 886
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
N + +P++R +CKTNLSSNTAFR FG PQ+L IAE VA L + N+
Sbjct: 887 NCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNM 946
Query: 164 FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
+ G+LTH+NQ LE ++ RC+++ +S +Y R+ + ++FN+ N +KRG+ I+P FG
Sbjct: 947 YKEGDLTHFNQRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKFG 1006
Query: 224 VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINET 283
++F FLNQAGAL+ +Y DGSVL+SH GTEMGQG+HTKM+QVA++ L IP I+I+ET
Sbjct: 1007 ISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISET 1066
Query: 284 ATDKVPNASPTAASVGSDLNGMAILWA 310
+T+ VPN+SPTAASV +D+ G A+ A
Sbjct: 1067 STNTVPNSSPTAASVSTDIYGQAVYEA 1093
>pdb|3SR6|C Chain C, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
pdb|3SR6|L Chain L, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
Length = 745
Score = 287 bits (735), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 135/267 (50%), Positives = 190/267 (71%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
LDR+ED+++TG R+PF +YKVGF K+G + EV Y+NAG S DLS ++M RA+FH
Sbjct: 257 LDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMD 316
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
N + +P++R +CKTNLSSNTAFR FG PQ+L IAE VA L + N+
Sbjct: 317 NCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNM 376
Query: 164 FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
+ G+LTH+NQ LE ++ RC+++ +S +Y R+ + ++FN+ N +KRG+ I+P FG
Sbjct: 377 YKEGDLTHFNQRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKFG 436
Query: 224 VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINET 283
++F FLNQAGAL+ +Y DGSVL+SH GTEMGQG+HTKM+QVA++ L IP I+I+ET
Sbjct: 437 ISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISET 496
Query: 284 ATDKVPNASPTAASVGSDLNGMAILWA 310
+T+ VPN+SPTAASV +D+ G A+ A
Sbjct: 497 STNTVPNSSPTAASVSTDIYGQAVYEA 523
>pdb|1N5X|A Chain A, Xanthine Dehydrogenase From Bovine Milk With Inhibitor Tei-
6720 Bound
pdb|1N5X|B Chain B, Xanthine Dehydrogenase From Bovine Milk With Inhibitor Tei-
6720 Bound
Length = 1331
Score = 287 bits (735), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 135/267 (50%), Positives = 190/267 (71%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
LDR+ED+++TG R+PF +YKVGF K+G + EV Y+NAG S DLS ++M RA+FH
Sbjct: 826 LDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMD 885
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
N + +P++R +CKTNLSSNTAFR FG PQ+L IAE VA L + N+
Sbjct: 886 NCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNM 945
Query: 164 FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
+ G+LTH+NQ LE ++ RC+++ +S +Y R+ + ++FN+ N +KRG+ I+P FG
Sbjct: 946 YKEGDLTHFNQRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKFG 1005
Query: 224 VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINET 283
++F FLNQAGAL+ +Y DGSVL+SH GTEMGQG+HTKM+QVA++ L IP I+I+ET
Sbjct: 1006 ISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISET 1065
Query: 284 ATDKVPNASPTAASVGSDLNGMAILWA 310
+T+ VPN+SPTAASV +D+ G A+ A
Sbjct: 1066 STNTVPNSSPTAASVSTDIYGQAVYEA 1092
>pdb|3NRZ|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NRZ|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NVW|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVW|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVY|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVY|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
Length = 756
Score = 287 bits (735), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 135/267 (50%), Positives = 190/267 (71%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
LDR+ED+++TG R+PF +YKVGF K+G + EV Y+NAG S DLS ++M RA+FH
Sbjct: 257 LDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMD 316
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
N + +P++R +CKTNLSSNTAFR FG PQ+L IAE VA L + N+
Sbjct: 317 NCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNM 376
Query: 164 FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
+ G+LTH+NQ LE ++ RC+++ +S +Y R+ + ++FN+ N +KRG+ I+P FG
Sbjct: 377 YKEGDLTHFNQRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKFG 436
Query: 224 VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINET 283
++F FLNQAGAL+ +Y DGSVL+SH GTEMGQG+HTKM+QVA++ L IP I+I+ET
Sbjct: 437 ISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISET 496
Query: 284 ATDKVPNASPTAASVGSDLNGMAILWA 310
+T+ VPN+SPTAASV +D+ G A+ A
Sbjct: 497 STNTVPNSSPTAASVSTDIYGQAVYEA 523
>pdb|3ETR|C Chain C, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3ETR|N Chain N, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3NS1|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NS1|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NVV|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVV|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVZ|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3NVZ|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
Length = 755
Score = 287 bits (735), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 135/267 (50%), Positives = 190/267 (71%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
LDR+ED+++TG R+PF +YKVGF K+G + EV Y+NAG S DLS ++M RA+FH
Sbjct: 257 LDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMD 316
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
N + +P++R +CKTNLSSNTAFR FG PQ+L IAE VA L + N+
Sbjct: 317 NCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNM 376
Query: 164 FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
+ G+LTH+NQ LE ++ RC+++ +S +Y R+ + ++FN+ N +KRG+ I+P FG
Sbjct: 377 YKEGDLTHFNQRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKFG 436
Query: 224 VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINET 283
++F FLNQAGAL+ +Y DGSVL+SH GTEMGQG+HTKM+QVA++ L IP I+I+ET
Sbjct: 437 ISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISET 496
Query: 284 ATDKVPNASPTAASVGSDLNGMAILWA 310
+T+ VPN+SPTAASV +D+ G A+ A
Sbjct: 497 STNTVPNSSPTAASVSTDIYGQAVYEA 523
>pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase From Bovine Milk
pdb|3B9J|C Chain C, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
pdb|3B9J|K Chain K, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
Length = 763
Score = 287 bits (734), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 135/267 (50%), Positives = 190/267 (71%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
LDR+ED+++TG R+PF +YKVGF K+G + EV Y+NAG S DLS ++M RA+FH
Sbjct: 258 LDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMD 317
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
N + +P++R +CKTNLSSNTAFR FG PQ+L IAE VA L + N+
Sbjct: 318 NCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNM 377
Query: 164 FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
+ G+LTH+NQ LE ++ RC+++ +S +Y R+ + ++FN+ N +KRG+ I+P FG
Sbjct: 378 YKEGDLTHFNQRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKFG 437
Query: 224 VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINET 283
++F FLNQAGAL+ +Y DGSVL+SH GTEMGQG+HTKM+QVA++ L IP I+I+ET
Sbjct: 438 ISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISET 497
Query: 284 ATDKVPNASPTAASVGSDLNGMAILWA 310
+T+ VPN+SPTAASV +D+ G A+ A
Sbjct: 498 STNTVPNSSPTAASVSTDIYGQAVYEA 524
>pdb|3EUB|C Chain C, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|L Chain L, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|U Chain U, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|4 Chain 4, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
Length = 762
Score = 287 bits (734), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 135/267 (50%), Positives = 190/267 (71%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
LDR+ED+++TG R+PF +YKVGF K+G + EV Y+NAG S DLS ++M RA+FH
Sbjct: 257 LDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMD 316
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
N + +P++R +CKTNLSSNTAFR FG PQ+L IAE VA L + N+
Sbjct: 317 NCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNM 376
Query: 164 FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
+ G+LTH+NQ LE ++ RC+++ +S +Y R+ + ++FN+ N +KRG+ I+P FG
Sbjct: 377 YKEGDLTHFNQRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKFG 436
Query: 224 VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINET 283
++F FLNQAGAL+ +Y DGSVL+SH GTEMGQG+HTKM+QVA++ L IP I+I+ET
Sbjct: 437 ISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISET 496
Query: 284 ATDKVPNASPTAASVGSDLNGMAILWA 310
+T+ VPN+SPTAASV +D+ G A+ A
Sbjct: 497 STNTVPNSSPTAASVSTDIYGQAVYEA 523
>pdb|3ZYV|A Chain A, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|B Chain B, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|C Chain C, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|D Chain D, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
Length = 1335
Score = 226 bits (577), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 118/264 (44%), Positives = 166/264 (62%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
L+R +D+++TG R+P GKYK+GF +GK++ ++ LY N GC+ D S V+ A+
Sbjct: 832 LERRDDMLITGGRHPLLGKYKIGFMNNGKIKAADIQLYINGGCTPDDSELVIEYALLKLE 891
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
N++ +P++RV VCKTNL SNTAFR FG PQ + ET VA +L N+
Sbjct: 892 NAYKIPNLRVRGRVCKTNLPSNTAFRGFGFPQGAFVTETCMSAVAAKCRLPPEKVRELNM 951
Query: 164 FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
+ T + T +NQ + L +C+E E+ Y R+K +EFN+ +KRG+AI+P+ F
Sbjct: 952 YRTIDRTIHNQEFDPTNLLQCWEACVENSSYYNRKKAVDEFNQQRFWKKRGIAIIPMKFS 1011
Query: 224 VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINET 283
V F F QA ALV IY DGSVL++H G E+GQGI+TKMIQVA+R L IP I ++E
Sbjct: 1012 VGFPKTFYYQAAALVQIYTDGSVLVAHGGVELGQGINTKMIQVASRELKIPMSYIHLDEM 1071
Query: 284 ATDKVPNASPTAASVGSDLNGMAI 307
+T VPN T AS G+D+NG A+
Sbjct: 1072 STVTVPNTVTTGASTGADVNGRAV 1095
>pdb|2W55|B Chain B, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|D Chain D, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|F Chain F, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|H Chain H, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
Length = 777
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/283 (42%), Positives = 159/283 (56%), Gaps = 20/283 (7%)
Query: 45 DRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCTN 104
DRD+D+V+TG+R+ F +Y++G SGKL + G S DLS V RA+ H
Sbjct: 258 DRDDDMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRAMLHADG 317
Query: 105 SFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLF 164
S++VP +R+ + +TN SNTAFR FG PQ L E H+A+ + D A+ N +
Sbjct: 318 SYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGRDPAELRALNFY 377
Query: 165 ---VTGNL-----------------THYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEF 204
G L THY Q + C LG ++ +S + RR + +
Sbjct: 378 DPPERGGLSAPPSPPEPIATKKTQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIAAW 437
Query: 205 NRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMI 264
N NR RG+A+ PV FG++F LNQAGALV IY DGSV ++H GTEMGQG+H KM+
Sbjct: 438 NSTNRTLARGIALSPVKFGISFTLTHLNQAGALVQIYTDGSVALNHGGTEMGQGLHAKMV 497
Query: 265 QVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAI 307
QVAA L I + I T T KVPN S TAAS G+D+NGMA+
Sbjct: 498 QVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADMNGMAV 540
>pdb|1JRO|B Chain B, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|D Chain D, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|F Chain F, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|H Chain H, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRP|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|D Chain D, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|F Chain F, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|H Chain H, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|2W3R|B Chain B, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|D Chain D, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|F Chain F, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|H Chain H, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3S|B Chain B, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|D Chain D, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|F Chain F, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|H Chain H, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W54|B Chain B, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|D Chain D, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|F Chain F, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|H Chain H, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
Length = 777
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/283 (42%), Positives = 159/283 (56%), Gaps = 20/283 (7%)
Query: 45 DRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCTN 104
DRD+D+V+TG+R+ F +Y++G SGKL + G S DLS V RA+ H
Sbjct: 258 DRDDDMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRAMLHADG 317
Query: 105 SFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLF 164
S++VP +R+ + +TN SNTAFR FG PQ L E H+A+ + D A+ N +
Sbjct: 318 SYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGRDPAELRALNFY 377
Query: 165 ---VTGNL-----------------THYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEF 204
G L THY Q + C LG ++ +S + RR + +
Sbjct: 378 DPPERGGLSAPPSPPEPIATKKTQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIAAW 437
Query: 205 NRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMI 264
N NR RG+A+ PV FG++F LNQAGALV IY DGSV ++H GTEMGQG+H KM+
Sbjct: 438 NSTNRTLARGIALSPVKFGISFTLTHLNQAGALVQIYTDGSVALNHGGTEMGQGLHAKMV 497
Query: 265 QVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAI 307
QVAA L I + I T T KVPN S TAAS G+D+NGMA+
Sbjct: 498 QVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADMNGMAV 540
>pdb|1DGJ|A Chain A, Crystal Structure Of The Aldehyde Oxidoreductase From
Desulfovibrio Desulfuricans Atcc 27774
Length = 907
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 112/258 (43%), Gaps = 9/258 (3%)
Query: 53 TGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCTNSFYVPHVR 112
TG+R+PF+ + + GK+ E + G + + R + + + ++R
Sbjct: 459 TGKRSPFWTTMRYAADRQGKILAMETDWSVDHGPYSEFGDLLTLRGAQYIGAGYGIANIR 518
Query: 113 VNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHY 172
TN AFR +GAP+S +E + +A+ L +D + N + G+ T
Sbjct: 519 GTGRTVATNHCWGAAFRGYGAPESEFPSEVLMDELAEKLGMDPFELRALNCYREGDTTSS 578
Query: 173 NQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLN 232
Q+ E +L F+++ Y+E +K+ +E R KRGV + ++G + +
Sbjct: 579 GQIPEVMSLPEMFDKMRPY--YEESKKRVKE--RSTAEIKRGVGVALGVYGAGLDGPDTS 634
Query: 233 QAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQV---AARGLNIPAELIFINETATDKVP 289
+ A V + DGSV + + + GQG + A R L I E I + T K P
Sbjct: 635 E--AWVELNDDGSVTLGNSWEDHGQGADAGSLGTAHEALRPLGITPENIHLVMNDTSKTP 692
Query: 290 NASPTAASVGSDLNGMAI 307
N+ P S + G AI
Sbjct: 693 NSGPAGGSRSQVVTGNAI 710
>pdb|3HRD|A Chain A, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|E Chain E, Crystal Structure Of Nicotinate Dehydrogenase
Length = 425
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 5/158 (3%)
Query: 46 RDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCTNS 105
R+E ++ +R+P K G +K G+LQ +V ++ + G AV+ RA HC
Sbjct: 268 REESTTVSSKRHPMTMHCKTGATKDGRLQAVQVEMFGDTGAYASYGPAVITRATVHCMGP 327
Query: 106 FYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFV 165
+ VP+VRV+A TN + AFR FG PQ+ + E + +A+ L +D D N
Sbjct: 328 YVVPNVRVDAKFVYTNNPMSGAFRGFGVPQASVCHEGQMNALAKALGMDPIDIRILNAHQ 387
Query: 166 TGNLTHYNQVLEHC-----TLGRCFEQVHESGKYKERR 198
G QVLE+ TL + E+ E Y++ R
Sbjct: 388 VGAKLATGQVLENSVGLIETLEKAREKAVEVMGYEKTR 425
>pdb|1SIJ|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
pdb|1VLB|A Chain A, Structure Refinement Of The Aldehyde Oxidoreductase From
Desulfovibrio Gigas At 1.28 A
pdb|3FAH|A Chain A, Glycerol Inhibited Form Of Aldehyde Oxidoreductase From
Desulfovibrio Gigas
pdb|3FC4|A Chain A, Ethylene Glycol Inhibited Form Of Aldehyde Oxidoreductase
From Desulfovibrio Gigas
pdb|3L4P|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
Length = 907
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 107/259 (41%), Gaps = 11/259 (4%)
Query: 53 TGQRNPFYGKYKVGFSKSGKLQVCEV-WLYNNAGCSYDLSTAVMRRAIFHCTNSFYVPHV 111
TG+R+P+ K K G L E WL ++ S +R A F + +P++
Sbjct: 457 TGKRSPWEMNVKFAAKKDGTLLAMESDWLVDHGPYSEFGDLLTLRGAQF-IGAGYNIPNI 515
Query: 112 RVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTH 171
R TN +AFR +GAPQS+ +E + +A+ L +D + N + G+
Sbjct: 516 RGLGRTVATNHVWGSAFRGYGAPQSMFASECLMDMLAEKLGMDPLELRYKNAYRPGDTNP 575
Query: 172 YNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFL 231
Q E +L +Q+ + + Q E H K+GV I ++G +
Sbjct: 576 TGQEPEVFSLPDMIDQLRPKYQAALEKAQKESTATH----KKGVGISIGVYGSGLDGPDA 631
Query: 232 NQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQV---AARGLNIPAELIFINETATDKV 288
++A A + DG++ + + GQG + A R + + E I T
Sbjct: 632 SEAWA--ELNADGTITVHTAWEDHGQGADIGCVGTAHEALRPMGVAPEKIKFTWPNTATT 689
Query: 289 PNASPTAASVGSDLNGMAI 307
PN+ P+ S + G AI
Sbjct: 690 PNSGPSGGSRQQVMTGNAI 708
>pdb|1RM6|A Chain A, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1RM6|D Chain D, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|A Chain A, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|D Chain D, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
Length = 769
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 91/217 (41%), Gaps = 13/217 (5%)
Query: 62 KYKVGFSKSGKLQVCEVWLYNNAGC--SYDLSTAVMRRAIFHCTNSFYVPHVRVNAFVCK 119
K K+G K GK+ + G Y + T + A+ H +++P ++ +A+
Sbjct: 291 KMKIGLKKDGKIAALALEATQAGGAYAGYGIITILYTGALMH--GLYHIPAIKHDAWRVY 348
Query: 120 TNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFV-TGNLTHYNQVLEH 178
TN A R G + E + + + L +D + N+ +T Y Q +
Sbjct: 349 TNTPPCGAMRGHGTVDTRAAFEALLTEMGEELGIDSLKIRQINMLPQIPYVTMYAQRVMS 408
Query: 179 CTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALV 238
+ C E+V + ++ER+ + + R G+A+ + G + + + A V
Sbjct: 409 YGVPECLEKVKAASGWEERKGKLP------KGRGLGIALSHFVSGTSTPKHWTGEPHATV 462
Query: 239 LIYVD--GSVLISHCGTEMGQGIHTKMIQVAARGLNI 273
+ +D G + + ++GQG +T QVAA L +
Sbjct: 463 NLKLDFDGGITLLTGAADIGQGSNTMASQVAAEVLGV 499
>pdb|3HRD|B Chain B, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|F Chain F, Crystal Structure Of Nicotinate Dehydrogenase
Length = 330
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 210 LRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAAR 269
++KRG + + +G+ T N A A V I+ DGS + ++GQG T M Q+AA
Sbjct: 1 MKKRGKGVGSMWYGIG-NTGLPNPAAAFVEIHGDGSANVMFGAADIGQGSGTAMAQIAAE 59
Query: 270 GLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA 310
L + E I + T P+ T+AS + + G A++ A
Sbjct: 60 ELGLDYEKIHVTWGDTMVTPDGGATSASRQTLITGNAVILA 100
>pdb|1ZXI|B Chain B, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
pdb|1ZXI|E Chain E, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
Length = 809
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 104/274 (37%), Gaps = 40/274 (14%)
Query: 45 DRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFH--C 102
DR E++ T ++ ++ +K GK+ + + G + A F C
Sbjct: 300 DRMENLSTTSFARDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNIC 359
Query: 103 TNSFYVP--HVRVNAFVCKTNLSSNTAFR-AFGAPQSLLIAETMGHHVAQFLKLDYADFA 159
T S+ +P H+ V+ V S A+R +F +++ E +AQ L++D AD
Sbjct: 360 TGSYDMPVAHLAVDG-VYTNKASGGVAYRCSFRVTEAVYAIERAIETLAQRLEMDSADLR 418
Query: 160 RSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLR-------- 211
N Q LG ++ SG Y K+ + +++LR
Sbjct: 419 IKNFI------QPEQFPYMAPLGWEYD----SGNYPLAMKKAMDTVGYHQLRAEQKAKQE 468
Query: 212 --KRGVAIVPVLFGVAFETLFLNQA--------------GALVLIYVDGSVLISHCGTEM 255
KRG + G++F T + A + I+ GSV+
Sbjct: 469 AFKRGETREIMGIGISFFTEIVGAGPSKNCDILGVSMFDSAEIRIHPTGSVIARMGTKSQ 528
Query: 256 GQGIHTKMIQVAARGLNIPAELIFINETATDKVP 289
GQG T Q+ A L IPA+ I I E TD P
Sbjct: 529 GQGHETTYAQIIATELGIPADDIMIEEGNTDTAP 562
>pdb|1N5W|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N5W|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N60|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N60|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N61|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N61|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N62|B Chain B, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N62|E Chain E, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N63|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
pdb|1N63|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
Length = 809
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 104/274 (37%), Gaps = 40/274 (14%)
Query: 45 DRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFH--C 102
DR E++ T ++ ++ +K GK+ + + G + A F C
Sbjct: 300 DRMENLSTTSFARDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNIC 359
Query: 103 TNSFYVP--HVRVNAFVCKTNLSSNTAFR-AFGAPQSLLIAETMGHHVAQFLKLDYADFA 159
T S+ +P H+ V+ V S A+R +F +++ E +AQ L++D AD
Sbjct: 360 TGSYDMPVAHLAVDG-VYTNKASGGVAYRCSFRVTEAVYAIERAIETLAQRLEMDSADLR 418
Query: 160 RSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLR-------- 211
N Q LG ++ SG Y K+ + +++LR
Sbjct: 419 IKNFI------QPEQFPYMAPLGWEYD----SGNYPLAMKKAMDTVGYHQLRAEQKAKQE 468
Query: 212 --KRGVAIVPVLFGVAFETLFLNQA--------------GALVLIYVDGSVLISHCGTEM 255
KRG + G++F T + A + I+ GSV+
Sbjct: 469 AFKRGETREIMGIGISFFTEIVGAGPSKNCDILGVSMFDSAEIRIHPTGSVIARMGTKSQ 528
Query: 256 GQGIHTKMIQVAARGLNIPAELIFINETATDKVP 289
GQG T Q+ A L IPA+ I I E TD P
Sbjct: 529 GQGHETTYAQIIATELGIPADDIMIEEGNTDTAP 562
>pdb|1T3Q|B Chain B, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|E Chain E, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 788
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 73/199 (36%), Gaps = 29/199 (14%)
Query: 106 FYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFV 165
+ VP V + TN A+R G + ET+ A+ L L + R N+ +
Sbjct: 348 YKVPAVSEESIAVATNKCPIGAYRGVGFTAGQIARETLIDRAARQLGLSPFEIRRRNVVM 407
Query: 166 TGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKR------------ 213
+ N+ LG Q H G Y + EE R+R
Sbjct: 408 PEDFPFTNR------LG----QTHREGTYLQTINLLEEMVNPEAFRQRQAEARARGKYLG 457
Query: 214 -GVAIVPVLFGVAFETL-FLNQA-----GALVLIYVDGSVLISHCGTEMGQGIHTKMIQV 266
GV++ + G TL FL A V I G V ++ GQG T + Q+
Sbjct: 458 LGVSVFNEVTGTGTRTLSFLGTPTTTHDSATVRIDPTGKVTVTTSLASSGQGHETTLAQI 517
Query: 267 AARGLNIPAELIFINETAT 285
AA L +PA + I +T
Sbjct: 518 AADVLGVPASDVVIQAGST 536
>pdb|1FFU|B Chain B, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFU|E Chain E, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFV|B Chain B, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
pdb|1FFV|E Chain E, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
Length = 803
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 98/272 (36%), Gaps = 39/272 (14%)
Query: 45 DRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMR--RAIFH- 101
DR E+I T ++ ++ + GK+ V + + G ++D + +FH
Sbjct: 297 DRVENISTTAFARDYHMDGELAATPDGKILGLRVNVVADHG-AFDACADPTKFPAGLFHI 355
Query: 102 CTNSFYVP--HVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFA 159
C+ S+ +P H V +F +++ + E M +AQ L +D A+
Sbjct: 356 CSGSYDIPRAHCSVKGVYTNKAPGGVAYXXSFRVTEAVYLIERMVDVLAQKLNMDKAEIR 415
Query: 160 RSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLR-----KRG 214
N + Q F ++SG Y K+ + + LR +R
Sbjct: 416 AKNFIRKEQFPYTTQ----------FGFEYDSGDYHTALKKVLDAVDYPALRAEQAARRA 465
Query: 215 VAIVPVLFGVAFETLFLNQAGA-----------------LVLIYVDGSVLISHCGTEMGQ 257
P L G+ T F GA + I+ GS + GQ
Sbjct: 466 DPNSPTLMGIGLVT-FTEVVGAGPSKMCDILGVGMFDSCEIRIHPTGSAIARMGTITQGQ 524
Query: 258 GIHTKMIQVAARGLNIPAELIFINETATDKVP 289
G T Q+ A L IP+E+I + E T P
Sbjct: 525 GHQTTYAQIIATELGIPSEVIQVEEGDTSTAP 556
>pdb|4G5E|A Chain A, 2,4,6-Trichlorophenol 4-Monooxygenase
pdb|4G5E|B Chain B, 2,4,6-Trichlorophenol 4-Monooxygenase
pdb|4G5E|C Chain C, 2,4,6-Trichlorophenol 4-Monooxygenase
pdb|4G5E|D Chain D, 2,4,6-Trichlorophenol 4-Monooxygenase
Length = 517
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 250 HCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAIL 308
H G GI I AA +N P I E+ + P P AS G +L+GM +
Sbjct: 202 HIGVFFRPGIPGDQIIFAATPVNTPGVTIVCRESVVKEDPIEHPL-ASQGDELDGMTVF 259
>pdb|3VDG|A Chain A, Crystal Structure Of Enolase Msmeg_6132 (Target
Efi-502282) From Mycobacterium Smegmatis Str. Mc2 155
Complexed With Formate And Acetate
pdb|3VFC|A Chain A, Crystal Structure Of Enolase Msmeg_6132 (Target
Efi-502282) From Mycobacterium Smegmatis Str. Mc2 155
Complexed With Tartrate
Length = 445
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 207 HNRLRKRGVAIVPVLFG--VAFETLFLNQAGAL-VLIYVDGSVLISHCGTEMGQGIHTKM 263
HNR+R G + PV F T+ ++Q AL +I +D ++ G +H +
Sbjct: 25 HNRIRITGARVTPVAFADPPLLNTVGVHQPYALRAVIQLDTDAGLTGLGETYADTVHLER 84
Query: 264 IQVAARGL 271
+Q AA +
Sbjct: 85 LQAAAHAI 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,204,445
Number of Sequences: 62578
Number of extensions: 369833
Number of successful extensions: 752
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 724
Number of HSP's gapped (non-prelim): 27
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)