Query psy14054
Match_columns 311
No_of_seqs 181 out of 1246
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 18:24:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14054hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02738 Ald_Xan_dh_C2: Molybd 100.0 1.2E-66 2.6E-71 519.0 28.4 289 20-310 107-396 (547)
2 TIGR02965 xanthine_xdhB xanthi 100.0 5E-66 1.1E-70 529.2 32.2 285 24-310 238-524 (758)
3 TIGR03194 4hydrxCoA_A 4-hydrox 100.0 5.9E-65 1.3E-69 520.1 31.4 279 22-310 239-521 (746)
4 PRK09970 xanthine dehydrogenas 100.0 2.2E-64 4.8E-69 517.5 33.1 287 19-310 250-538 (759)
5 PLN02906 xanthine dehydrogenas 100.0 2.7E-64 5.9E-69 538.6 32.3 285 24-310 805-1089(1319)
6 TIGR02969 mam_aldehyde_ox alde 100.0 4.8E-64 1E-68 536.4 33.2 285 24-310 810-1094(1330)
7 TIGR03196 pucD xanthine dehydr 100.0 2.8E-63 6.2E-68 508.7 32.0 285 24-310 244-544 (768)
8 TIGR02416 CO_dehy_Mo_lg carbon 100.0 2.7E-63 5.8E-68 509.8 31.6 288 21-310 250-552 (770)
9 PRK09800 putative hypoxanthine 100.0 1.3E-61 2.8E-66 503.0 32.3 280 19-310 450-741 (956)
10 PLN00192 aldehyde oxidase 100.0 2.6E-61 5.5E-66 515.8 33.2 281 22-310 823-1115(1344)
11 TIGR03313 Se_sel_red_Mo probab 100.0 2.9E-61 6.4E-66 500.7 31.0 280 19-310 446-737 (951)
12 TIGR03311 Se_dep_Molyb_1 selen 100.0 1.2E-60 2.5E-65 492.9 30.8 267 24-310 403-670 (848)
13 COG4631 XdhB Xanthine dehydrog 100.0 1.7E-54 3.6E-59 407.7 20.2 289 20-310 251-541 (781)
14 KOG0430|consensus 100.0 8.6E-54 1.9E-58 431.9 24.4 277 27-310 773-1049(1257)
15 COG1529 CoxL Aerobic-type carb 100.0 4E-47 8.8E-52 387.8 26.3 275 25-310 245-520 (731)
16 COG1529 CoxL Aerobic-type carb 98.9 5.2E-10 1.1E-14 115.3 3.7 227 15-266 389-629 (731)
17 PF02594 DUF167: Uncharacteris 92.4 0.83 1.8E-05 33.6 7.2 52 236-287 18-69 (77)
18 TIGR02965 xanthine_xdhB xanthi 85.5 1.9 4.2E-05 45.3 6.6 58 232-300 175-232 (758)
19 PRK00647 hypothetical protein; 83.9 3.8 8.2E-05 31.5 5.8 46 242-287 25-70 (96)
20 TIGR02416 CO_dehy_Mo_lg carbon 82.8 3.8 8.2E-05 43.2 7.3 58 232-300 190-248 (770)
21 PRK09970 xanthine dehydrogenas 82.7 2.7 5.8E-05 44.2 6.2 57 232-299 193-249 (759)
22 PRK05090 hypothetical protein; 82.2 4 8.7E-05 31.3 5.4 46 242-287 30-75 (95)
23 PF02738 Ald_Xan_dh_C2: Molybd 81.9 4.6 0.0001 40.7 7.4 47 232-283 49-95 (547)
24 PRK01530 hypothetical protein; 81.7 3.9 8.4E-05 32.0 5.2 45 243-287 38-82 (105)
25 TIGR03194 4hydrxCoA_A 4-hydrox 81.5 4.2 9.1E-05 42.7 7.1 58 232-300 178-236 (746)
26 PLN00192 aldehyde oxidase 80.1 3.8 8.2E-05 45.9 6.5 58 232-300 762-819 (1344)
27 TIGR03196 pucD xanthine dehydr 78.8 4.1 9E-05 42.9 6.0 58 232-300 183-240 (768)
28 TIGR03313 Se_sel_red_Mo probab 75.7 5.7 0.00012 42.9 6.1 57 232-300 390-446 (951)
29 PLN02906 xanthine dehydrogenas 75.1 7 0.00015 43.8 6.8 58 232-300 741-799 (1319)
30 TIGR02969 mam_aldehyde_ox alde 74.2 7.2 0.00016 43.7 6.5 58 232-300 746-804 (1330)
31 PTZ00450 macrophage migration 72.2 3.2 7E-05 32.8 2.4 27 260-286 78-104 (113)
32 PTZ00397 macrophage migration 70.5 3.6 7.9E-05 32.4 2.4 28 260-287 78-105 (116)
33 PF08869 XisI: XisI protein; 69.6 7.2 0.00016 30.8 3.8 43 234-286 55-101 (111)
34 PRK01310 hypothetical protein; 67.3 16 0.00034 28.5 5.3 43 245-287 39-81 (104)
35 TIGR03311 Se_dep_Molyb_1 selen 67.0 16 0.00035 39.0 7.1 57 232-300 343-399 (848)
36 PRK09800 putative hypoxanthine 65.5 14 0.0003 40.1 6.2 56 232-299 394-449 (956)
37 PF06971 Put_DNA-bind_N: Putat 64.6 5.9 0.00013 26.6 2.1 17 145-161 32-48 (50)
38 PF12685 SpoIIIAH: SpoIIIAH-li 63.9 13 0.00028 32.2 4.8 47 234-281 150-196 (196)
39 PRK01964 4-oxalocrotonate taut 62.4 5.7 0.00012 27.6 1.9 27 260-286 21-47 (64)
40 cd00491 4Oxalocrotonate_Tautom 56.0 12 0.00026 25.0 2.6 26 261-286 21-46 (58)
41 COG1872 Uncharacterized conser 55.5 44 0.00095 25.9 5.8 49 239-287 30-79 (102)
42 cd06406 PB1_P67 A PB1 domain i 54.5 60 0.0013 24.0 6.1 47 236-286 3-49 (80)
43 PF01187 MIF: Macrophage migra 53.1 5.8 0.00013 31.1 0.7 26 261-286 77-102 (114)
44 PRK02289 4-oxalocrotonate taut 52.7 13 0.00027 25.6 2.3 34 261-296 22-55 (60)
45 PRK02220 4-oxalocrotonate taut 52.6 10 0.00022 25.9 1.8 26 261-286 22-47 (61)
46 PF11211 DUF2997: Protein of u 51.9 34 0.00075 22.6 4.1 34 237-273 2-36 (48)
47 TIGR00251 conserved hypothetic 51.2 64 0.0014 24.2 6.0 41 244-287 31-71 (87)
48 TIGR00013 taut 4-oxalocrotonat 51.1 12 0.00027 25.6 2.0 26 261-286 22-47 (63)
49 PRK04021 hypothetical protein; 47.1 63 0.0014 24.5 5.5 42 243-287 31-72 (92)
50 PF06903 VirK: VirK protein; 47.0 28 0.00061 26.9 3.5 57 28-84 7-68 (100)
51 COG0245 IspF 2C-methyl-D-eryth 46.9 56 0.0012 27.4 5.5 37 253-290 103-139 (159)
52 PRK00745 4-oxalocrotonate taut 41.1 21 0.00045 24.3 1.9 26 261-286 22-47 (62)
53 PF14552 Tautomerase_2: Tautom 39.1 11 0.00024 28.0 0.2 26 261-286 50-75 (82)
54 PF00165 HTH_AraC: Bacterial r 38.6 33 0.00071 21.4 2.4 20 142-161 9-28 (42)
55 cd06409 PB1_MUG70 The MUG70 pr 38.0 30 0.00064 26.0 2.4 52 138-194 21-76 (86)
56 COG3423 Nlp Predicted transcri 34.8 17 0.00037 26.6 0.6 19 262-280 48-66 (82)
57 PRK01271 4-oxalocrotonate taut 34.6 36 0.00078 24.8 2.3 27 259-285 21-47 (76)
58 PF01361 Tautomerase: Tautomer 33.8 40 0.00087 22.8 2.4 24 261-284 21-44 (60)
59 COG4631 XdhB Xanthine dehydrog 33.0 89 0.0019 31.6 5.3 44 234-282 194-237 (781)
60 PF04686 SsgA: Streptomyces sp 32.4 28 0.0006 26.9 1.5 52 15-69 5-56 (100)
61 PF02954 HTH_8: Bacterial regu 31.9 49 0.0011 20.8 2.4 19 143-161 20-38 (42)
62 PF05121 GvpK: Gas vesicle pro 30.2 79 0.0017 23.8 3.5 26 136-161 53-78 (88)
63 PF04539 Sigma70_r3: Sigma-70 30.1 45 0.00098 23.7 2.3 20 143-162 22-41 (78)
64 COG1942 Uncharacterized protei 29.9 54 0.0012 23.5 2.5 36 261-298 23-58 (69)
65 PF13103 TonB_2: TonB C termin 29.6 1.1E+02 0.0023 22.0 4.3 30 55-86 22-51 (85)
66 PF14174 YycC: YycC-like prote 28.1 20 0.00044 23.9 0.1 16 263-278 10-25 (53)
67 PF00356 LacI: Bacterial regul 27.8 1.1E+02 0.0023 20.0 3.5 42 144-194 2-43 (46)
68 PF14813 NADH_B2: NADH dehydro 27.5 29 0.00063 25.1 0.8 10 268-277 60-69 (71)
69 PF04205 FMN_bind: FMN-binding 27.4 1.1E+02 0.0023 21.9 3.9 25 60-84 5-29 (81)
70 PF13333 rve_2: Integrase core 27.4 42 0.0009 22.2 1.5 12 152-163 41-52 (52)
71 TIGR02899 spore_safA spore coa 27.1 1.3E+02 0.0028 18.0 3.8 20 144-163 7-26 (44)
72 PF02002 TFIIE_alpha: TFIIE al 26.8 68 0.0015 24.5 2.9 35 128-162 7-48 (105)
73 cd04761 HTH_MerR-SF Helix-Turn 26.2 67 0.0014 20.3 2.4 17 144-160 3-19 (49)
74 PF06892 Phage_CP76: Phage reg 26.1 59 0.0013 27.3 2.6 25 137-161 16-40 (162)
75 PRK10344 DNA-binding transcrip 25.3 31 0.00067 26.1 0.6 19 262-280 48-66 (92)
76 PF05120 GvpG: Gas vesicle pro 23.4 1.2E+02 0.0027 22.3 3.5 35 122-162 3-37 (79)
77 PRK00241 nudC NADH pyrophospha 23.0 2.3E+02 0.005 25.6 6.0 99 181-282 82-194 (256)
78 PRK00111 hypothetical protein; 22.8 2.6E+02 0.0055 24.1 5.8 88 179-284 67-159 (180)
79 PF13404 HTH_AsnC-type: AsnC-t 22.7 92 0.002 19.8 2.4 18 144-161 20-37 (42)
80 PF09012 FeoC: FeoC like trans 22.7 76 0.0016 22.2 2.3 17 144-160 17-33 (69)
81 KOG1759|consensus 22.6 95 0.002 24.6 2.9 27 261-287 78-104 (115)
82 KOG0430|consensus 22.6 2E+02 0.0044 31.8 6.2 59 244-310 719-777 (1257)
83 smart00422 HTH_MERR helix_turn 21.7 2.3E+02 0.0049 19.3 4.6 17 144-160 3-19 (70)
84 PF00376 MerR: MerR family reg 21.1 1E+02 0.0022 19.1 2.3 17 144-160 2-18 (38)
85 PHA01083 hypothetical protein 20.9 1.4E+02 0.003 24.8 3.6 22 140-161 45-66 (149)
86 COG2344 AT-rich DNA-binding pr 20.9 74 0.0016 27.7 2.1 18 145-162 36-53 (211)
87 PF08921 DUF1904: Domain of un 20.8 78 0.0017 24.8 2.1 36 127-162 5-40 (108)
88 cd02152 OAT Ornithine acetyltr 20.7 1.6E+02 0.0034 28.6 4.6 37 246-282 61-102 (390)
89 PF04760 IF2_N: Translation in 20.7 52 0.0011 21.9 1.0 19 144-162 6-24 (54)
90 cd06411 PB1_p51 The PB1 domain 20.6 1.1E+02 0.0024 22.5 2.8 27 260-286 19-45 (78)
91 PF01476 LysM: LysM domain; I 20.5 1.4E+02 0.003 18.3 3.0 19 144-162 9-27 (44)
92 cd04762 HTH_MerR-trunc Helix-T 20.3 1E+02 0.0022 18.9 2.4 17 144-160 3-19 (49)
No 1
>PF02738 Ald_Xan_dh_C2: Molybdopterin-binding domain of aldehyde dehydrogenase; InterPro: IPR008274 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3NVZ_C 3NVY_C 1FO4_B 3NRZ_L 3AM9_A 3B9J_C 3AX7_B 3NVW_L 3BDJ_A 3ETR_N ....
Probab=100.00 E-value=1.2e-66 Score=518.99 Aligned_cols=289 Identities=28% Similarity=0.367 Sum_probs=244.9
Q ss_pred cCCccchhhhhhhccccCCceEEEcchHHHHhhcCCCCCeEEEEEEeeCCCCcEEEEEEEEEeecCCCCCchHHHHHHHH
Q psy14054 20 ANNEKPVNDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAI 99 (311)
Q Consensus 20 ~~~~~p~aa~~s~~~~~grPVkl~~tReE~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~~~ 99 (311)
..+..++++++|++ +||||||+|||+|+|+.+.+||++.+++|+|+|+||+|+|++++++.|.|+|..++..+.....
T Consensus 107 ~~~~~~~aa~~a~~--~grPVk~~~tR~e~~~~~~~r~~~~~~~~~g~~~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~~~ 184 (547)
T PF02738_consen 107 DSPIAVLAALAAKK--TGRPVKLVWTREEDFRAGPKRPPTRIRVRAGADKDGKITALDHDIYADGGAYASFSPAVAPRAG 184 (547)
T ss_dssp THHHHHHHHHHHHH--HSSEEEEE--HHHHHHHS-BB-EEEEEEEEEE-TTS-EEEEEEEEEEEEESS-TTHHHHHHHHH
T ss_pred cchHHHHHHHHHhc--cCceEEEEechHHhcCCCCCccHHHhhhhheECCCCCEEEeeeeeeccCCccccccccchhhhh
Confidence 34456778999987 6999999999999999999999999999999999999999999999999999998888877777
Q ss_pred HhcCCCCccCeEEEEEEEEEcCCCCcccccCCCchHHHHHHHHHHHHHHHHcCCCHHHHHHhhCCcCCCcccccceecCC
Q psy14054 100 FHCTNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHC 179 (311)
Q Consensus 100 ~~~~~~Y~ipn~r~~~~~v~TN~~p~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~g~~~~~g~~~~~~ 179 (311)
....++|+|||++++++.|+||++|.|+|||||.+|+.||+|++|||||++|||||+|||++|+.++++.+++|..++++
T Consensus 185 ~~~~~~Y~ipn~~~~~~~v~Tn~~~~g~~Rg~G~~q~~fa~E~~~DelA~~lg~DP~e~R~~N~~~~~~~~~~g~~~~~~ 264 (547)
T PF02738_consen 185 AGADGPYRIPNVRIDARAVYTNTPPAGAFRGFGAPQAAFALESFMDELAEKLGMDPLEFRLKNLIDPGDRTPTGQPYDSG 264 (547)
T ss_dssp HTTTTTB--SEEEEEEEEEE-SSSSBE-STTTTHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHB-GTTEB-TTS-BETS-
T ss_pred cccCCCcccccEEEEEEeccCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHhCcChHHHHHhcccccccccccCcccccC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHH-HHHHHHHcCChHHHHHHHHHHhhccCcceeeeEeeeEeeeccccccccCccceEEEEeeCCeEEEEeCCCCCCCC
Q psy14054 180 TLGR-CFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQG 258 (311)
Q Consensus 180 ~~~~-~l~~~~e~~~w~~~~~~~~~~~~~~~~~~rGig~a~~~~g~~~~~~~~~~~~a~v~l~~dG~v~v~~g~~d~GqG 258 (311)
++.+ ||+++++.++|.++.++.+.++...+++++|+|+++..++.++.....+.+.+.|+|++||+|+|.++..|+|||
T Consensus 265 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gig~~~~~~~~~~~~~~~~~~~a~v~l~~DG~v~v~~~~~e~GqG 344 (547)
T PF02738_consen 265 DYPEDCLEKAAEHSGWRRRQKEVREFGSGNGWRGRGIGLGCAMYGSGTGGGSGDQSSARVRLNPDGSVTVYTGGVEMGQG 344 (547)
T ss_dssp -HHHHHHHHHHHHHCHHHHHHHHHHCCHEESSEEEEEEEEEEEEEESTTSGGGSEEEEEEEE-TTS-EEEEES--BSSSS
T ss_pred cHHHHHHHHHHhhhchhhhhhHHhhccccccccccccCCCccccccccccccccCCcEEEEEEeCCCEEEEEecccCCcc
Confidence 9998 999999999999998777766666678899999999888877654434678999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhhhhhHHHHHhc
Q psy14054 259 IHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA 310 (311)
Q Consensus 259 ~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~~~~g~Av~~A 310 (311)
++|+++||+||+||||+|+|+|..+||+.+|++++|+|||++++.|.|+++|
T Consensus 345 ~~T~~~qiaAe~Lgi~~~~V~v~~~dT~~~p~~~~t~gSr~t~~~g~Av~~A 396 (547)
T PF02738_consen 345 SRTALAQIAAEELGIPPEDVRVVSGDTDTTPYDGGTGGSRSTYMSGNAVRKA 396 (547)
T ss_dssp HHHHHHHHHHHHHTS-GGGEEEEECBTTTS-SB--S-TTTHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhCCChhhEEEEeCCCcCCCCCCCCccchhhHhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987
No 2
>TIGR02965 xanthine_xdhB xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase.
Probab=100.00 E-value=5e-66 Score=529.19 Aligned_cols=285 Identities=39% Similarity=0.603 Sum_probs=261.6
Q ss_pred cchhhhhhhccccCCceEEEcchHHHHhhcCCCCCeEEEEEEeeCCCCcEEEEEEEEEeecCCCCCchHHHHHHHHHhcC
Q psy14054 24 KPVNDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103 (311)
Q Consensus 24 ~p~aa~~s~~~~~grPVkl~~tReE~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~~~~~~~ 103 (311)
+++++++|++ +||||||+|||+|+|..+.+||++.+++|+++|+||+|++++++++.|.|+|...+..+.........
T Consensus 238 ~~~aa~~A~~--~grPVk~~~sR~E~~~~~~~r~~~~~~~~~g~~~dG~i~a~~~~~~~d~Gay~~~~~~~~~~~~~~~~ 315 (758)
T TIGR02965 238 ACLAAVAARK--TGRPVKLRPDRDDDMMITGKRHDFLVDYDVGFDDEGRILGVDIDMAARCGFSADLSGPVTDRALFHAD 315 (758)
T ss_pred HHHHHHHHHH--HCCCEEEEechHHhhhhccCccceEEEEEEEECCCCCEEEEEEEEeecCcccCCcchHHHHHHHHhcC
Confidence 5788999987 69999999999999999999999999999999999999999999999999998765555566666789
Q ss_pred CCCccCeEEEEEEEEEcCCCCcccccCCCchHHHHHHHHHHHHHHHHcCCCHHHHHHhhCCcCCCcc--cccceecCCCH
Q psy14054 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLT--HYNQVLEHCTL 181 (311)
Q Consensus 104 ~~Y~ipn~r~~~~~v~TN~~p~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~g~~~--~~g~~~~~~~~ 181 (311)
++|+|||++++++.|+||++|+|+|||||.+|+.|++|++||++|++|||||+|||+||++++|+.. ++|+.++++.+
T Consensus 316 ~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mD~~A~~lg~DP~e~R~~Nl~~~g~~~~~~~g~~~~s~~~ 395 (758)
T TIGR02965 316 NAYFLPDVTITSHPLKTNTQSNTAFRGFGGPQGMVAIERIMDEVARALGKDPLEVRKRNFYGKDERNVTPYHQTVEDNII 395 (758)
T ss_pred CcccCCceEEEEEEEEcCCCCCccccCCChHHHHHHHHHHHHHHHHHhCcCHHHHHHHcCCCCCCCCcCCCceeccCCcH
Confidence 9999999999999999999999999999999999999999999999999999999999999988776 66999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhccCcceeeeEeeeEeeeccccccccCccceEEEEeeCCeEEEEeCCCCCCCChHH
Q psy14054 182 GRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHT 261 (311)
Q Consensus 182 ~~~l~~~~e~~~w~~~~~~~~~~~~~~~~~~rGig~a~~~~g~~~~~~~~~~~~a~v~l~~dG~v~v~~g~~d~GqG~~t 261 (311)
++||+++++.++|++++++.+.++..+++++||+|+++..++.++.....+.+.+.|+|++||+|+|+++.+|||||++|
T Consensus 396 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~rGiG~a~~~~g~~~~~~~~~~~~a~v~i~~dG~v~v~~g~~e~GQG~~T 475 (758)
T TIGR02965 396 HEIIEELEESSDYAARRAAIRAFNAASPVLKKGIALTPVKFGISFTVTHLNQAGALVHVYTDGSIHLNHGGTEMGQGLNT 475 (758)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCceeEEEEeeeeccccccccccCccceEEEEeCCCcEEEEECCCCCCCCHHH
Confidence 99999999999999887766666666777789999998878776532123467899999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhhhhhHHHHHhc
Q psy14054 262 KMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA 310 (311)
Q Consensus 262 ~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~~~~g~Av~~A 310 (311)
+++||+||+|||++|+|+|..+||+.+|++++|+|||+|++.|.||++|
T Consensus 476 ~laQIaAe~LGi~~d~V~v~~~DT~~~p~~~gT~gSr~t~~~g~Av~~A 524 (758)
T TIGR02965 476 KVAQVVAEEFQVDIDRVKITATDTDKVPNTSATAASSGSDLNGMAAQDA 524 (758)
T ss_pred HHHHHHHHHhCCCHHHEEEEecCccCCCCCCCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987
No 3
>TIGR03194 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha subunit. This model represents the largest chain, alpha, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=100.00 E-value=5.9e-65 Score=520.11 Aligned_cols=279 Identities=21% Similarity=0.239 Sum_probs=254.6
Q ss_pred CccchhhhhhhccccCCceEEEcchHHHHhhcCCCCCeEEEEEEeeCCCCcEEEEEEEEEeecCCCCCchHHHHHHHHHh
Q psy14054 22 NEKPVNDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFH 101 (311)
Q Consensus 22 ~~~p~aa~~s~~~~~grPVkl~~tReE~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~~~~~ 101 (311)
..+++++++|++ +||||||+|||+|+|..+.+||++.+++|+++|+||+|+|++++++.|+|+|.+++..+.......
T Consensus 239 ~~~~~aal~a~~--~grPVk~~~~ReE~~~~~~~R~~~~~~~~~g~~~dG~i~a~~~~~~~d~Gay~~~~~~~~~~~~~~ 316 (746)
T TIGR03194 239 NFEIIAGLLARK--AKGTVRLLQTREETFITHRGRPQTYVKMKIGLKKDGKITACAAEVVQRGGAYAGYGIVTILYAGAL 316 (746)
T ss_pred hHHHHHHHHHHH--hCCCEEEecchhhhhhcCCCCCceEEEEEEEECCCCeEEEEEEEEeecccccCCcchHHHHHHHHh
Confidence 355788999987 699999999999999999999999999999999999999999999999999998777666666678
Q ss_pred cCCCCccCeEEEEEEEEEcCCCCcccccCCCchHHHHHHHHHHHHHHHHcCCCHHHHHHhhCCcCCCcccccceecCCCH
Q psy14054 102 CTNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTL 181 (311)
Q Consensus 102 ~~~~Y~ipn~r~~~~~v~TN~~p~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~g~~~~~g~~~~~~~~ 181 (311)
+.++|+|||++++++.|+||++|+|+|||||.+|+.||+|++||++|++|||||+|||+||++++++.+++|+.++++++
T Consensus 317 ~~g~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mD~lA~~lg~DPve~R~~N~~~~~~~~~~g~~~~s~~~ 396 (746)
T TIGR03194 317 LHGLYDIPAVKYDGYRVYTNTPPCGAMRGHGTVDTRAAFESLLDEMAAELGIDPFAIRRRNLLQAPTVTMNDLRVMSYGL 396 (746)
T ss_pred cCCCcccceEEEEEEEEEcCCCCCCCCCCCChhHHHHHHHHHHHHHHHHhCcCHHHHHHHhCcCCCCCCCCCceecCCCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhccCcceeeeEeeeEeeeccccc----cccCccceEEEEeeCCeEEEEeCCCCCCC
Q psy14054 182 GRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFET----LFLNQAGALVLIYVDGSVLISHCGTEMGQ 257 (311)
Q Consensus 182 ~~~l~~~~e~~~w~~~~~~~~~~~~~~~~~~rGig~a~~~~g~~~~~----~~~~~~~a~v~l~~dG~v~v~~g~~d~Gq 257 (311)
++||++++++++|.+++++. +++||+|++++.++++... ...+.+.+.|+|++||+|+|.++.+|+||
T Consensus 397 ~~~l~~~~e~~~w~~~~~~~--------~~~rGiG~a~~~~~~~~~~~~~~~~~~~~~a~v~l~~dG~v~v~~g~~e~Gq 468 (746)
T TIGR03194 397 PECLEKVEQASGWEERKGRL--------PKGRGLGIACSHFVSGSAKPIHFTGEPHATVALKLDFDGGITLLTGAADIGQ 468 (746)
T ss_pred HHHHHHHHHhcCchhhhhhc--------cccEEEEEEEEEEeccCCcccccCCCCCceEEEEEcCCccEEEEEcCCCCCC
Confidence 99999999999998754321 2457777777766543321 11346899999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhhhhhHHHHHhc
Q psy14054 258 GIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA 310 (311)
Q Consensus 258 G~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~~~~g~Av~~A 310 (311)
|++|+++||+||+||+|+|+|+|..+||+.+|++++|+|||+|++.|.||++|
T Consensus 469 G~~T~~~qiaAe~LGip~d~V~v~~~DT~~~p~~~gt~~Sr~t~~~G~Av~~A 521 (746)
T TIGR03194 469 GSSTIASQVAAEVLGVRLSRIRVISADSALTPKDNGSYSSRVTFMVGNAAIDA 521 (746)
T ss_pred CHHHHHHHHHHHHhCCCHHhEEEEccCCCCCCCCCCChhHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987
No 4
>PRK09970 xanthine dehydrogenase subunit XdhA; Provisional
Probab=100.00 E-value=2.2e-64 Score=517.49 Aligned_cols=287 Identities=25% Similarity=0.299 Sum_probs=259.9
Q ss_pred ccCCccchhhhhhhccccCCceEEEcchHHHHhhcCCCCCeEEEEEEeeCCCCcEEEEEEEEEeecCCCCCchHHHHHHH
Q psy14054 19 DANNEKPVNDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRA 98 (311)
Q Consensus 19 ~~~~~~p~aa~~s~~~~~grPVkl~~tReE~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~~ 98 (311)
|... +++|+++|+++ .||||||+|||+|+|..+.+||++.+++|+|+|+||+|+|++++++.|+|+|.++++.+...+
T Consensus 250 ~~~~-~~~aa~la~~~-~grPVk~~~~R~E~~~~~~~r~~~~~~~~~g~~~dG~i~a~~~~~~~d~Gay~~~~~~~~~~~ 327 (759)
T PRK09970 250 DVLE-EPLAAFLTSKV-GGRPVKVSLSREECFLATRTRHAFTIDIKMGVNRDGTLKGYSLDVLSNTGAYASHGHSIASAG 327 (759)
T ss_pred ccCH-HHHHHHHHHHh-cCCCeEEeechhHhhhcCCCCCceEEEEEEEECCCCcEEEEEEEEeeccccCCCcchHHHHHH
Confidence 4444 47889998873 389999999999999999999999999999999999999999999999999998877777667
Q ss_pred HHhcCCCCccCeEEEEEEEEEcCCCCcccccCCCchHHHHHHHHHHHHHHHHcCCCHHHHHHhhCCcCCCcccc-cceec
Q psy14054 99 IFHCTNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHY-NQVLE 177 (311)
Q Consensus 99 ~~~~~~~Y~ipn~r~~~~~v~TN~~p~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~g~~~~~-g~~~~ 177 (311)
...+.++|+|||++++++.|+||++|+|+|||||.+|++|++|++|||+|++|||||+|||+||++++|+.+++ |..++
T Consensus 328 ~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mD~~A~~lg~DP~e~R~~N~~~~g~~~~~~g~~~~ 407 (759)
T PRK09970 328 GNKVAYLYPRCAYKYSSKTVYTNLPSAGAMRGYGAPQVVFAVESMLDDAATALGIDPVEFRLRNAAREGDANPLSGKRIY 407 (759)
T ss_pred HhhcCCCccCceEEEEEEEEECCCCCCCCCCCCChhHHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCCCcCCCCCeeec
Confidence 77889999999999999999999999999999999999999999999999999999999999999999988885 88999
Q ss_pred CCCHHHHHHHHHHcCChHHHHHHHHHHhhccCcceeeeEeeeEeeeccccccccCccceEEEEeeCCeEEEEeCCCCCCC
Q psy14054 178 HCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQ 257 (311)
Q Consensus 178 ~~~~~~~l~~~~e~~~w~~~~~~~~~~~~~~~~~~rGig~a~~~~g~~~~~~~~~~~~a~v~l~~dG~v~v~~g~~d~Gq 257 (311)
++++++||++++++++|++++++.+. . +.+++||+|++++.++++......+.+.+.|+|++||+|+|+++.+||||
T Consensus 408 s~~~~~~l~~~~~~~~~~~~~~~~~~--~-~~~~~rGiG~a~~~~~~~~~~~~~~~~~a~v~i~~dGsv~v~~g~~e~GQ 484 (759)
T PRK09970 408 SAGLPECLEKGRKIFEWDKRRAECKN--Q-QGNLRRGVGVACFSYTSGTWPVGLEIAGARLLMNQDGTVQVQSGATEIGQ 484 (759)
T ss_pred CCCHHHHHHHHHHhcCchhhhHhHhh--h-cCCceEEEEEEEEEEeecCCCCCCCcceEEEEEccCceEEEEECCCCcCC
Confidence 99999999999999999987654331 1 22467899998877776653222357899999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCcEEEecC-CCCCCCCCCCcccchhhhhhHHHHHhc
Q psy14054 258 GIHTKMIQVAARGLNIPAELIFINET-ATDKVPNASPTAASVGSDLNGMAILWA 310 (311)
Q Consensus 258 G~~t~~~Qi~Ae~Lgi~~~~V~v~~~-dT~~~p~~~~t~~Sr~~~~~g~Av~~A 310 (311)
|++|+++||+||+||||+++|+|..+ ||+.+|++++|+|||++++.|.|+++|
T Consensus 485 G~~T~~aQiaAe~LGi~~~~V~v~~~~dT~~~p~~~gt~aSr~t~~~g~Av~~A 538 (759)
T PRK09970 485 GSDTVFSQMVAETVGIPVSDVRVISTQDTDVTPFDPGAYASRQSYVAGPAIRKA 538 (759)
T ss_pred CHHHHHHHHHHHHhCCCHHhEEEEccCCCCCCCCCCCCchhhhHHHHHHHHHHH
Confidence 99999999999999999999999988 999999999999999999999999986
No 5
>PLN02906 xanthine dehydrogenase
Probab=100.00 E-value=2.7e-64 Score=538.59 Aligned_cols=285 Identities=49% Similarity=0.769 Sum_probs=266.2
Q ss_pred cchhhhhhhccccCCceEEEcchHHHHhhcCCCCCeEEEEEEeeCCCCcEEEEEEEEEeecCCCCCchHHHHHHHHHhcC
Q psy14054 24 KPVNDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103 (311)
Q Consensus 24 ~p~aa~~s~~~~~grPVkl~~tReE~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~~~~~~~ 103 (311)
++.++++|++ +||||||+|||+|+|+.+++||++.+++|+|+|+||+|++++++++.|.|+|.+++..++..+..+..
T Consensus 805 ~~~aAlaA~~--~gRPVkl~~sReE~~~~~~~R~~~~~~~k~g~~~dG~I~a~~~~~~~d~Ga~~~~~~~v~~~~~~~~~ 882 (1319)
T PLN02906 805 AAAAAVPAYL--LNRPVKLTLDRDVDMMITGQRHAFLGKYKVGFTNEGKILALDLEIYNNGGNSLDLSGAVLERAMFHSD 882 (1319)
T ss_pred HHHHHHHHHH--hCCCEEEEecHHHHhhhcCCccceEEEEEEEECCCCCEEEEEEEEEecCcccCCcchHHHHHHHHhcC
Confidence 4667888877 69999999999999999999999999999999999999999999999999998877777777777889
Q ss_pred CCCccCeEEEEEEEEEcCCCCcccccCCCchHHHHHHHHHHHHHHHHcCCCHHHHHHhhCCcCCCcccccceecCCCHHH
Q psy14054 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGR 183 (311)
Q Consensus 104 ~~Y~ipn~r~~~~~v~TN~~p~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~g~~~~~g~~~~~~~~~~ 183 (311)
++|+|||++++++.|+||++|+|+|||||.+|+.|++|++||++|++|||||+|||++|+.++|+.+++|+.++++.+++
T Consensus 883 ~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~~Nl~~~g~~~~~g~~~~~~~~~~ 962 (1319)
T PLN02906 883 NVYEIPNVRIVGNVCFTNFPSNTAFRGFGGPQGMLITENWIQRIAVELNKSPEEIREMNFQGEGSVTHYGQVLQHCTLPQ 962 (1319)
T ss_pred CCccCcceEEEEEEEECCCCCCCcccCCCHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCCCCCcCCccccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhccCcceeeeEeeeEeeeccccccccCccceEEEEeeCCeEEEEeCCCCCCCChHHHH
Q psy14054 184 CFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKM 263 (311)
Q Consensus 184 ~l~~~~e~~~w~~~~~~~~~~~~~~~~~~rGig~a~~~~g~~~~~~~~~~~~a~v~l~~dG~v~v~~g~~d~GqG~~t~~ 263 (311)
||+++++.++|++++++.++++..++|++||+|+++..++.++.....++..+.|+|++||+|+|++|++|||||++|++
T Consensus 963 ~l~~~~~~~~~~~r~~~~~~~~~~~~~~krGiG~a~~~~g~~~~~~~~~~~~a~V~i~~DGsV~V~~G~~e~GQG~~T~~ 1042 (1319)
T PLN02906 963 LWDELKVSCDFLKRREEVDEFNAKNRWKKRGVAMVPTKFGISFTTKFMNQAGALVHVYTDGTVLVTHGGVEMGQGLHTKV 1042 (1319)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcCCCceEEEEEEecccccccccccCCccceEEEEcCCceEEEEECCccCCCChHHHH
Confidence 99999999999988877777887788888999999877776653222346789999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhhhhhHHHHHhc
Q psy14054 264 IQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA 310 (311)
Q Consensus 264 ~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~~~~g~Av~~A 310 (311)
+||+||+||||+|+|+|..+||+.+|++++|+|||+|++.|.||++|
T Consensus 1043 aQiaAe~LGip~d~V~v~~~DT~~~p~~~gT~aSr~t~~~G~Av~~A 1089 (1319)
T PLN02906 1043 AQVAASAFNIPLSSVFISETSTDKVPNASPTAASASSDMYGAAVLDA 1089 (1319)
T ss_pred HHHHHHHHCCCHHHEEEEccCCCCCCCCCCCccchhhHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987
No 6
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=100.00 E-value=4.8e-64 Score=536.36 Aligned_cols=285 Identities=38% Similarity=0.616 Sum_probs=265.5
Q ss_pred cchhhhhhhccccCCceEEEcchHHHHhhcCCCCCeEEEEEEeeCCCCcEEEEEEEEEeecCCCCCchHHHHHHHHHhcC
Q psy14054 24 KPVNDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103 (311)
Q Consensus 24 ~p~aa~~s~~~~~grPVkl~~tReE~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~~~~~~~ 103 (311)
+++++++|++ +||||||+|||+|+|..+++||++.+++|+|+|+||+|++++++++.|+|+|.+.+..++..+.....
T Consensus 810 ~~~aA~aA~~--~gRPVk~~~sR~e~~~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~~~~v~~~~~~~~~ 887 (1330)
T TIGR02969 810 AAITAFAANK--HGRAVRCTLERGEDMLITGGRHPYLGKYKAGFMNDGRIVALDVEHYSNGGSSLDESLWVIEMGLLKMD 887 (1330)
T ss_pred HHHHHHHHHH--hCCCEEEEecHHHHhhhcCCcCceEEEEEEEECCCCCEEEEEEEEEEecccccCcchHHHHHHHHhcC
Confidence 4678888877 69999999999999999999999999999999999999999999999999998877656666667789
Q ss_pred CCCccCeEEEEEEEEEcCCCCcccccCCCchHHHHHHHHHHHHHHHHcCCCHHHHHHhhCCcCCCcccccceecCCCHHH
Q psy14054 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGR 183 (311)
Q Consensus 104 ~~Y~ipn~r~~~~~v~TN~~p~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~g~~~~~g~~~~~~~~~~ 183 (311)
++|+|||++++++.|+||+||.++|||||.+|+.|++|++||++|++|||||+|||++|++++|+.+++|++++++.+++
T Consensus 888 ~~Y~ipn~~~~~~~v~TN~~~~~a~RG~G~~q~~fa~E~~mD~lA~~lg~DP~e~R~~N~~~~gd~~p~~~~~~~~~~~~ 967 (1330)
T TIGR02969 888 NAYKFPNLRCRGWACRTNLPSNTAFRGFGFPQAGLITEACITEVAAKCGLSPEKVRTINMYKEIDQTPYKQEINAKNLFQ 967 (1330)
T ss_pred CCccCCcEEEEEEEEECCCCCCCccCCCchHHHHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCcccCCCCcccCCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhccCcceeeeEeeeEeeeccccccccCccceEEEEeeCCeEEEEeCCCCCCCChHHHH
Q psy14054 184 CFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKM 263 (311)
Q Consensus 184 ~l~~~~e~~~w~~~~~~~~~~~~~~~~~~rGig~a~~~~g~~~~~~~~~~~~a~v~l~~dG~v~v~~g~~d~GqG~~t~~ 263 (311)
||+++++.++|++++++.+.++..++|++||+|++++.++.++......++.+.|+|++||+|+|.+|++|||||++|++
T Consensus 968 ~l~~~~~~~~~~~r~~~~~~~~~~~~~~~rGiG~a~~~~~~~~~~~~~~~~~a~v~i~~DGsV~V~~G~~e~GQG~~T~~ 1047 (1330)
T TIGR02969 968 CWRECMAKSSYSERKVAVEKFNAENYWKKRGLAVIPLKFPVGLGSVAMGQAAALVHIYLDGSVLVTHGGIEMGQGVHTKM 1047 (1330)
T ss_pred HHHHHHHhcCHHHHHHHHHHHhccCCCeEEEEEEEEEEeccccccCCCCCccEEEEEcCCceEEEEECCcCcCCChHHHH
Confidence 99999999999988777666777777888999999988887654322346889999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhhhhhHHHHHhc
Q psy14054 264 IQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA 310 (311)
Q Consensus 264 ~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~~~~g~Av~~A 310 (311)
+||+||+||||+|+|+|..+||+.+|++++|+|||+|+++|.||++|
T Consensus 1048 aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~gSr~t~~~G~Av~~A 1094 (1330)
T TIGR02969 1048 IQVVSRELKMPMSNVHLRGTSTETVPNTNASGGSVVADLNGLAVKDA 1094 (1330)
T ss_pred HHHHHHHhCCCHHHEEEEcCCCCCCCCCCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987
No 7
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=100.00 E-value=2.8e-63 Score=508.69 Aligned_cols=285 Identities=24% Similarity=0.261 Sum_probs=251.0
Q ss_pred cchhhhhhhccccCCceEEEcchHHHHhhcCCCCCeEEEEEEeeCCCCcEEEEEEEEEeecCCCCCchHHHHHHHHHhcC
Q psy14054 24 KPVNDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103 (311)
Q Consensus 24 ~p~aa~~s~~~~~grPVkl~~tReE~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~~~~~~~ 103 (311)
+++++++|++ +||||||+|||+|+|..+.+||++.+++|+++|+||+|++++++++.|+|+|..++..+.......+.
T Consensus 244 ~~~aa~~A~~--~gRPVk~~~sReE~~~~~~~r~~~~~~~k~g~~~dG~i~a~~~~~~~d~Gay~~~~~~v~~~~~~~~~ 321 (768)
T TIGR03196 244 QIHAALLALA--SGLPVKIAQDRKESFLGGIHRHPAKITFKHGADADGNLLAHDAKIVADGGAYASLGPAVLAFAVEHAA 321 (768)
T ss_pred HHHHHHHHHH--hCCCEEEEechHHhhhcCCCCCCeEEEEEEEECCCCcEEEEEEEEEecccccCCccHHHHHHHHHhcC
Confidence 3677888887 69999999999999999999999999999999999999999999999999998877666666666789
Q ss_pred CCCccCeEEEEEEEEEcCCCCcccccCCCchHHHHHHHHHHHHHHHHcCCCHHHHHHhhCCcCCCcccccceec-CCCHH
Q psy14054 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLE-HCTLG 182 (311)
Q Consensus 104 ~~Y~ipn~r~~~~~v~TN~~p~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~g~~~~~g~~~~-~~~~~ 182 (311)
++|+|||++++++.++||++|+|+|||||.+|+.|++|++|||+|++|||||+|||+||++++|+.+++|+++. +..++
T Consensus 322 ~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~g~~~~~g~~~~~~~~~~ 401 (768)
T TIGR03196 322 GPYRIPNAHLEGISVFTNNGPAGAFRGFGGNQITFAHEAHLDRLADALGIDPLDLRRKNARKPGDLGPLEHRIAAPDGAA 401 (768)
T ss_pred CCcccceEEEEEEEEEcCCCCCCccCCCChhHHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCCCcCCCCcccCCcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888887 78899
Q ss_pred HHHHHHHHcCChH-----HHHHHHHHHh------hccCcceeeeEeeeEeeeccccccccC--ccceEEEEeeCCe--EE
Q psy14054 183 RCFEQVHESGKYK-----ERRKQCEEFN------RHNRLRKRGVAIVPVLFGVAFETLFLN--QAGALVLIYVDGS--VL 247 (311)
Q Consensus 183 ~~l~~~~e~~~w~-----~~~~~~~~~~------~~~~~~~rGig~a~~~~g~~~~~~~~~--~~~a~v~l~~dG~--v~ 247 (311)
+||++++++++|. ++...+..++ +.+.+++||+|++++.++++......+ .+.+.|+|++||+ |+
T Consensus 402 ~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~g~~~rGiG~a~~~~~~~~~~~~~~~~~~~a~v~l~~dGsv~v~ 481 (768)
T TIGR03196 402 EVIEAIASRPLPKAPILKKANRAVTALPGGRPAAAECGRLQRGTGAAIAMHGGGFGEGMDDAAVAGARLELAEDGTVKIR 481 (768)
T ss_pred HHHHHHHhhccccchhhhhhhhhhhhhhhhhhhhhhcCCeeEEEEEEEEEecccCCCCccccCCccEEEEEeCCCCeEEE
Confidence 9999999999998 3222211111 111224678888888777665321112 2478999999995 88
Q ss_pred EEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhhhhhHHHHHhc
Q psy14054 248 ISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA 310 (311)
Q Consensus 248 v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~~~~g~Av~~A 310 (311)
|.++.+|||||++|+++||+||+||||+|+|+|..+||+.+|++++|+|||+|++.|.||++|
T Consensus 482 v~~g~~d~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~~Sr~t~~~G~Av~~A 544 (768)
T TIGR03196 482 AHFACAECGQGFLAAAEQIAMEELGCAAEDISIAIADTAKGPKAGSSSASRGTSMSGGAIQGA 544 (768)
T ss_pred EEECCCCcCCCHHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCCchhhhhHhHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999999987
No 8
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit. This model represents the large subunits of group of carbon-monoxide dehydrogenases that include molybdenum as part of the enzymatic cofactor. There are various forms of carbon-monoxide dehydrogenase; Salicibacter pomeroyi DSS-3, for example, has two forms. Note that, at least in some species, the active site Cys is modified with a selenium attached to (rather than replacing) the sulfur atom. This is termed selanylcysteine, and created post-translationally, in contrast to selenocysteine incorporation during translation as for many other selenoproteins.
Probab=100.00 E-value=2.7e-63 Score=509.81 Aligned_cols=288 Identities=20% Similarity=0.158 Sum_probs=247.9
Q ss_pred CCccchhhhhhhccccCCceEEEcchHHHHhhcCCCCCeEEEEEEeeCCCCcEEEEEEEEEeecCCCCCchHHHHHHHHH
Q psy14054 21 NNEKPVNDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIF 100 (311)
Q Consensus 21 ~~~~p~aa~~s~~~~~grPVkl~~tReE~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~~~~ 100 (311)
..+.++++++|++ +||||||+|||+|+|..+.+||++.+++|+|+|+||+|++++++++.|+|+|.++...+......
T Consensus 250 ~~~~~~aa~~A~~--~gRPVk~~~sR~E~~~~~~~r~~~~~~~k~g~d~dG~i~a~~~~~~~d~Gay~~~~~~~~~~~~~ 327 (770)
T TIGR02416 250 YPGYVCAIVASIV--LGVPVKWVEDRMENLSTTSFARDYHMTGELAATKDGKILAMRCNVLADHGAFDACADPSKWPAGF 327 (770)
T ss_pred ccHHHHHHHHHHH--hCCCEEEecchHHhhhcCCCCCceEEEEEEEECCCCcEEEEEEEEEeeccccCCCccchhhhhhh
Confidence 3455678888887 69999999999999999999999999999999999999999999999999998765444332222
Q ss_pred --hcCCCCccCeEEEEEEEEEcCCCCcc-ccc-CCCchHHHHHHHHHHHHHHHHcCCCHHHHHHhhCCcCCC---ccccc
Q psy14054 101 --HCTNSFYVPHVRVNAFVCKTNLSSNT-AFR-AFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGN---LTHYN 173 (311)
Q Consensus 101 --~~~~~Y~ipn~r~~~~~v~TN~~p~g-a~R-G~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~g~---~~~~g 173 (311)
.+.++|+|||++++++.|+||++|.+ +|| |||.+|+.|++|++||++|++|||||+|||+||++++++ .+++|
T Consensus 328 ~~~~~g~Y~ipn~~~~~~~v~TN~~p~gta~Rgg~G~pq~~fa~E~~mD~~A~~lg~DP~e~R~~N~~~~~~~p~~~~~g 407 (770)
T TIGR02416 328 FNICTGSYDIPVAHCAVDGVYTNKAPGGVAYRCSFRVTEAVYAIERAVDTLAQRLEMDSADLRIKNFIQPEQFPYTAPLG 407 (770)
T ss_pred hhhcCCccccceEEEEEEEEECCCCCCCCccccCCccHHHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCccCccccCCC
Confidence 46899999999999999999999998 999 899999999999999999999999999999999998865 34569
Q ss_pred ceecCCCHHHHHHHHHHcCChHHHHHHHHHHhhccCc-ceeeeEeeeEeeecccccc-------ccCccceEEEEeeCCe
Q psy14054 174 QVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRL-RKRGVAIVPVLFGVAFETL-------FLNQAGALVLIYVDGS 245 (311)
Q Consensus 174 ~~~~~~~~~~~l~~~~e~~~w~~~~~~~~~~~~~~~~-~~rGig~a~~~~g~~~~~~-------~~~~~~a~v~l~~dG~ 245 (311)
..++++++++||+++++.++|++++++....+..+++ +.+|+|++++.+..+.... ....+.+.|+|++||+
T Consensus 408 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~G~a~~~~~~~~~~~~~~~~~~~~~~~~a~v~l~~dG~ 487 (770)
T TIGR02416 408 WEYDSGDYPLAMKKAMDTVDYHQLRAEQAAKRKRGETRELMGIGISFFTEIVGAGPSKNCDILGVGMFDSCEIRIHPTGS 487 (770)
T ss_pred ceecCCCHHHHHHHHHHhcCchhhHHHHHHHHhcCCCCceEEEEEEEEEEeccCCCcccccccccCccceEEEEECCCce
Confidence 9999999999999999999999876554333333332 2467777765554432210 0114679999999999
Q ss_pred EEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhhhhhHHHHHhc
Q psy14054 246 VLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA 310 (311)
Q Consensus 246 v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~~~~g~Av~~A 310 (311)
|+|.+|++|+|||++|+++||+||+|||++|+|+|..+||+.+|++++|+|||+|++.|.||++|
T Consensus 488 v~v~~g~~e~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~~Sr~t~~~G~Av~~A 552 (770)
T TIGR02416 488 AIARMGTKSQGQGHETTYAQIIATELGIPAEDIMVEEGDTDTAPYGLGTYGSRSTPVAGAATALA 552 (770)
T ss_pred EEEEECCCCCCCCchHHHHHHHHHHHCCCHHHEEEEecCCCCCCCCCCCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987
No 9
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=100.00 E-value=1.3e-61 Score=503.00 Aligned_cols=280 Identities=19% Similarity=0.226 Sum_probs=245.6
Q ss_pred ccCCccchhhhhhhccccCCceEEEcchHHHHhhcCCCCCeEEEEEEeeCCCCcEEEEEEEEEeecCCCCCchHHHHHHH
Q psy14054 19 DANNEKPVNDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRA 98 (311)
Q Consensus 19 ~~~~~~p~aa~~s~~~~~grPVkl~~tReE~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~~ 98 (311)
|...+ ++++++|++ +||||||+|||+|+|..+.+||++.+++|+++|+||+|+|++++++.|+|+|.+++..+...+
T Consensus 450 ~~~~e-~~aA~aA~~--~grPVkl~~tReE~~~~~~~R~~~~~~~k~g~d~dG~I~a~~~~~~~d~Gay~~~~~~v~~~~ 526 (956)
T PRK09800 450 DILLE-EVCAWATCV--TGRPVLFRYTREEEFIANTSRHVAKVTVKLGAKKDGRLTAVKMDFRANTGPYGNHSLTVPCNG 526 (956)
T ss_pred cccHH-HHHHHHHHH--hCCCEEEEeeHHHHhhCcCCCCceEEEEEEEECCCCCEEEEEEEEEEcCCcCCCcchHHHHHH
Confidence 44433 668888877 699999999999999999999999999999999999999999999999999987766665555
Q ss_pred HHhcCCCCccCeEEEEEEEEEcCCCCcccccCCCchHHHHHHHHHHHHHHHHcCCCHHHHHHhhCCcCCCcccc------
Q psy14054 99 IFHCTNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHY------ 172 (311)
Q Consensus 99 ~~~~~~~Y~ipn~r~~~~~v~TN~~p~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~g~~~~~------ 172 (311)
.....++|+|||++++.+.++||++|+|+|||||.+|+.|++|++|||+|++|||||+|||+||++++|+.+++
T Consensus 527 ~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~Es~mDelA~~lg~DPve~R~rN~~~~gd~~~~~~~~~~ 606 (956)
T PRK09800 527 PALSLPLYPCDNVDFQVTTYYSNICPNGAYQGYGAPKGNFAITMALAELAEQLQIDQLEIIERNRVHEGQELKILGAIGE 606 (956)
T ss_pred HhhcCcCcccceEEEEEEEEECCCCCCCCcCCCCcchHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCCccccccccccc
Confidence 55667899999999999999999999999999999999999999999999999999999999999998876533
Q ss_pred -----cce-ecCCCHHHHHHHHHHcCChHHHHHHHHHHhhccCcceeeeEeeeEeeeccccccccCccceEEEEeeCCeE
Q psy14054 173 -----NQV-LEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSV 246 (311)
Q Consensus 173 -----g~~-~~~~~~~~~l~~~~e~~~w~~~~~~~~~~~~~~~~~~rGig~a~~~~g~~~~~~~~~~~~a~v~l~~dG~v 246 (311)
+.+ ++++.+++||++++++++|+++++ ..++|+ +|+|++++.+++++.. .+.+.+.|+|++||+|
T Consensus 607 g~~~~~~~~~~s~~~~~~L~~~~e~~~w~~~~~------~~g~~~-~G~Gia~~~~~~g~~~--~~~~~a~v~l~~dGsv 677 (956)
T PRK09800 607 GKAPTSVPSAASCALEEILRQGREMIQWSSPKP------QNGDWH-IGRGVAIIMQKSGIPD--IDQANCMIKLESDGTF 677 (956)
T ss_pred ccccccCccccCCCHHHHHHHHHHhcCcchhhh------hcCCCe-eEEEEEEEEEcccCCC--CCCceEEEEECCCceE
Confidence 222 567889999999999999986432 123443 3666666555555431 2467899999999999
Q ss_pred EEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhhhhhHHHHHhc
Q psy14054 247 LISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA 310 (311)
Q Consensus 247 ~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~~~~g~Av~~A 310 (311)
+|+++.+|+|||++|+++||+||+||||+|+|+|..+||+.+|++++|+|||+|+++|+||++|
T Consensus 678 ~v~~g~~e~GqG~~T~~~QiaAe~LGip~d~V~v~~~DT~~~p~~~gt~aSr~t~~~G~Av~~A 741 (956)
T PRK09800 678 IVHSGGADIGTGLDTVVTKLAAEVLHCPPQDVHVISGDTDHALFDKGAYASSGTCFSGNAARLA 741 (956)
T ss_pred EEEECCCCCCccHHHHHHHHHHHHHCCCceeEEEEeCCCCCCCCCCCcchhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987
No 10
>PLN00192 aldehyde oxidase
Probab=100.00 E-value=2.6e-61 Score=515.85 Aligned_cols=281 Identities=31% Similarity=0.420 Sum_probs=254.3
Q ss_pred CccchhhhhhhccccCCceEEEcchHHHHhhcCCCCCeEEEEEEeeCCCCcEEEEEEEEEeecCCCCCchHHHHHHHHHh
Q psy14054 22 NEKPVNDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFH 101 (311)
Q Consensus 22 ~~~p~aa~~s~~~~~grPVkl~~tReE~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~~~~~ 101 (311)
.+++.++++|++ +||||||+|||+|+|..+++||++.+++|+|+|+||+|++++++++.|+|+|.+++..+ .....+
T Consensus 823 ~~~~~aAlaA~~--~gRPVr~~~sR~Edm~~~~~R~~~~~~~k~g~~~dG~I~a~~~~~~~d~Ga~~~~~~~~-~~~~~~ 899 (1344)
T PLN00192 823 PVATACALAAFK--LQRPVRMYLNRKTDMIMAGGRHPMKITYSVGFKSDGKITALHLDILINAGISPDISPIM-PRNIIG 899 (1344)
T ss_pred hHHHHHHHHHHH--hCCCEEEEecHHHHhhhcCCcCceEEEEEEEECCCCCEEEEEEEEEEecccCCCcchHH-HHHHhh
Confidence 445677888877 69999999999999999999999999999999999999999999999999998765433 333345
Q ss_pred cCCCCccCeEEEEEEEEEcCCCCcccccCCCchHHHHHHHHHHHHHHHHcCCCHHHHHHhhCCcCCCcc-cccce---ec
Q psy14054 102 CTNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLT-HYNQV---LE 177 (311)
Q Consensus 102 ~~~~Y~ipn~r~~~~~v~TN~~p~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~g~~~-~~g~~---~~ 177 (311)
..++|+|||++++++.|+||++|+|||||||.+|++|++|++||++|++|||||+|||++|+++++... +++++ ++
T Consensus 900 ~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~pq~~fa~E~~mD~lA~~lg~DP~e~R~~Nl~~~~~~~~~~~~~~g~~~ 979 (1344)
T PLN00192 900 ALKKYDWGALSFDIKVCKTNLSSRSAMRAPGEVQGSYIAEAIIEHVASTLSMDVDSVRKINLHTYESLKLFYGDSAGEPS 979 (1344)
T ss_pred cCCCcCCCceEEEEEEEECCCCCCCcccCCCHHHHHHHHHHHHHHHHHHhCcCHHHHHHhcCCCccccccCCCCcccccC
Confidence 679999999999999999999999999999999999999999999999999999999999999764332 34433 37
Q ss_pred CCCHHHHHHHHHHcCChHHHHHHHHHHhhccCcceeeeEeeeEeeeccccccccCccceEEEEeeCCeEEEEeCCCCCCC
Q psy14054 178 HCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQ 257 (311)
Q Consensus 178 ~~~~~~~l~~~~e~~~w~~~~~~~~~~~~~~~~~~rGig~a~~~~g~~~~~~~~~~~~a~v~l~~dG~v~v~~g~~d~Gq 257 (311)
++.+++||+++++.++|++++++.++||..++|++||+|++++.++.++. ++.+.|+|++||+|+|.+|++||||
T Consensus 980 ~~~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~krGig~~~~~~~~~~~-----~~~a~v~i~~DGsv~v~~G~~e~GQ 1054 (1344)
T PLN00192 980 EYTLPSIWDKLASSSEFKQRTEMVKEFNRSNKWKKRGISRVPIVHEVMLR-----PTPGKVSILSDGSIAVEVGGIEIGQ 1054 (1344)
T ss_pred CCcHHHHHHHHHHhcChHHHHHHHHHHhhcCCceEEEEEEEEEEEecccc-----CCceEEEEeCCceEEEEECCCCCCC
Confidence 88999999999999999998888888888888999999999988887653 4689999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCC--------CCCcEEEecCCCCCCCCCCCcccchhhhhhHHHHHhc
Q psy14054 258 GIHTKMIQVAARGLNI--------PAELIFINETATDKVPNASPTAASVGSDLNGMAILWA 310 (311)
Q Consensus 258 G~~t~~~Qi~Ae~Lgi--------~~~~V~v~~~dT~~~p~~~~t~~Sr~~~~~g~Av~~A 310 (311)
|++|+++||+||+||| |+|+|+|..+||+.+|++++|+|||++++.|.||++|
T Consensus 1055 G~~T~~aQiaA~~LGi~~~~~~~ip~e~I~v~~~dT~~~p~~~~t~gSr~t~~~G~Av~~A 1115 (1344)
T PLN00192 1055 GLWTKVKQMAAFGLGMIKCDGGEDLLDKIRVIQSDTLSMIQGGFTAGSTTSESSCEAVRLC 1115 (1344)
T ss_pred CHHHHHHHHHHHHhCCccccccCCChhhEEEEecCCCCCCCCCCCchhhhHHHHHHHHHHH
Confidence 9999999999999995 9999999999999999999999999999999999987
No 11
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=100.00 E-value=2.9e-61 Score=500.71 Aligned_cols=280 Identities=18% Similarity=0.214 Sum_probs=245.1
Q ss_pred ccCCccchhhhhhhccccCCceEEEcchHHHHhhcCCCCCeEEEEEEeeCCCCcEEEEEEEEEeecCCCCCchHHHHHHH
Q psy14054 19 DANNEKPVNDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRA 98 (311)
Q Consensus 19 ~~~~~~p~aa~~s~~~~~grPVkl~~tReE~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~~ 98 (311)
|...+ ++++++|++ +||||||+|||+|+|.++++||++.+++|+++|+||+|+||+++++.|+|+|..++..+....
T Consensus 446 ~~~~e-~~aA~aA~~--~GrPVkl~~tReE~~~~~~~R~~~~~~~k~g~d~dG~I~A~~~~~~~d~Gay~~~~~~v~~~~ 522 (951)
T TIGR03313 446 DILLE-EVCAWATWV--TGRPVYFRYTREEEFICNTSRHVAKVTVKLGAKKDGKLTAIDMDFRANTGPYGNHSLTVPSNG 522 (951)
T ss_pred cccHH-HHHHHHHHH--hCCCEEEEeeHHHHhhccCCCCCeEEEEEEEECCCCcEEEEEEEEEEcCccCcccchHHhhhh
Confidence 44443 678999987 699999999999999999999999999999999999999999999999999987665554444
Q ss_pred HHhcCCCCccCeEEEEEEEEEcCCCCcccccCCCchHHHHHHHHHHHHHHHHcCCCHHHHHHhhCCcCCCccc-------
Q psy14054 99 IFHCTNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTH------- 171 (311)
Q Consensus 99 ~~~~~~~Y~ipn~r~~~~~v~TN~~p~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~g~~~~------- 171 (311)
.....++|+|||++++.+.++||++|+|+|||||.+|+.|++|++|||+|++|||||+|||+||++++|+.++
T Consensus 523 ~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~Rg~G~~q~~fa~Es~mDelA~~lG~DP~e~R~rN~~~~gd~~~~~~~~~~ 602 (951)
T TIGR03313 523 PALSLPLYPCDNVDFRVTTYYSNICPTGAYQGYGAPKGNFALTMAMAELAEELGIDQLEMIETNRVHEGQELKILGAIGE 602 (951)
T ss_pred hhhcCcCccCCeEEEEEEEEECCCCCCCCcCCCCcccHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCCccccccccccc
Confidence 4455688999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred ----ccce-ecCCCHHHHHHHHHHcCChHHHHHHHHHHhhccCcceeeeEeeeEeeeccccccccCccceEEEEeeCCeE
Q psy14054 172 ----YNQV-LEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSV 246 (311)
Q Consensus 172 ----~g~~-~~~~~~~~~l~~~~e~~~w~~~~~~~~~~~~~~~~~~rGig~a~~~~g~~~~~~~~~~~~a~v~l~~dG~v 246 (311)
++.+ ++++++.+||++++++++|+++.+ ..++|+ +|+|++++.+..++.. .+.+.+.|+|++||+|
T Consensus 603 g~~~~~~~~~~s~~~~~~l~~~~~~~~w~~~~~------~~g~~~-~G~Gia~~~~~~g~~~--~~~~~a~v~l~~dG~v 673 (951)
T TIGR03313 603 GKMPTSVPKAASCALEEILRQGRELIEWDSPKQ------AKGDWK-IGRGVAIIMQKSGIPD--IDQANCMIKLESDGTF 673 (951)
T ss_pred ccccccccccCCCcHHHHHHHHHHhcCccchhh------hccCce-eeeEEEEEEecccCCC--CCCccEEEEEcCCceE
Confidence 2223 567899999999999999987542 123443 3666666666555431 2467899999999999
Q ss_pred EEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhhhhhHHHHHhc
Q psy14054 247 LISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA 310 (311)
Q Consensus 247 ~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~~~~g~Av~~A 310 (311)
+|+++++|+|||++|+++||+||+||+|+|+|+|..+||+.+|++++|+|||+|+++|.||++|
T Consensus 674 ~v~~g~~e~GqG~~T~~~QiaAe~LGvp~d~V~v~~~DT~~~p~~~gt~aSr~t~~~G~Av~~A 737 (951)
T TIGR03313 674 IVHSGGADIGTGLDTVVSKLTAEVLHCPMDDVHVISGDTDHALFDKGAYASSGTCFSGNAAKRA 737 (951)
T ss_pred EEEECCCCCCccHHHHHHHHHHHHHCCCHHhEEEEeCCCCCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987
No 12
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=100.00 E-value=1.2e-60 Score=492.93 Aligned_cols=267 Identities=22% Similarity=0.266 Sum_probs=239.3
Q ss_pred cchhhhhhhccccCCceEEEcchHHHHhhcCCCCCeEEEEEEeeCCCCcEEEEEEEEEeecCCCCCchHHHHHHHHHhcC
Q psy14054 24 KPVNDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103 (311)
Q Consensus 24 ~p~aa~~s~~~~~grPVkl~~tReE~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~~~~~~~ 103 (311)
++.++++|++ +||||||+|||+|+|..+.+||++.+++|+++|+||+|++++++++.|+|+|.+++..++..+.....
T Consensus 403 ~~~aA~~A~~--~gRPVkl~~sR~E~~~~~~~R~~~~~~~k~g~d~dG~i~a~~~~~~~d~Gay~~~~~~v~~~~~~~~~ 480 (848)
T TIGR03311 403 QHHAALLAWA--TKRPVKVTLTRKESILVHPKRHAMEMTFTTGCDEAGNLTAMKADIIADTGAYASLGGPVLQRACTHAA 480 (848)
T ss_pred HHHHHHHHHH--hCCCEEEEechHHhhhccCCCCceEEEEEEEECCCCcEEEEEEEEEEccccCCCccHHHHHHHHHhcC
Confidence 3578888876 69999999999999999999999999999999999999999999999999999877667777777889
Q ss_pred CCCccCeEEEEEEEEEcCCCCcccccCCCchHHHHHHHHHHHHHHHHcCCCHHHHHHhhCCcCCCcccccceec-CCCHH
Q psy14054 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLE-HCTLG 182 (311)
Q Consensus 104 ~~Y~ipn~r~~~~~v~TN~~p~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~g~~~~~g~~~~-~~~~~ 182 (311)
++|+|||++++.+.|+||++|+|+|||||.+|+.|++|++||++|++|||||+|||+||++++|+.+++|+.++ +..++
T Consensus 481 ~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lg~DP~E~R~rN~~~~gd~~~~g~~~~~~~~~~ 560 (848)
T TIGR03311 481 GPYKYPNVDIRGTAVYTNNPPAGAFRGFGVTQSNFAMECNLNLLAEKVGLSPWEIRFKNAVEPGDTLPNGQVVSEGTAIK 560 (848)
T ss_pred CCccCceEEEEEEEEECCCCCCCCccCCChhHHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCCCcCCCCceeCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 55699
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhccCcceeeeEeeeEeeeccccccccCccceEEEEeeCCeEEEEeCCCCCCCChHHH
Q psy14054 183 RCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTK 262 (311)
Q Consensus 183 ~~l~~~~e~~~w~~~~~~~~~~~~~~~~~~rGig~a~~~~g~~~~~~~~~~~~a~v~l~~dG~v~v~~g~~d~GqG~~t~ 262 (311)
+||+++++. |++ ++++|+++ +.++.+..........+.++++ ||+|+|.++++|+|||++|+
T Consensus 561 ~~l~~~~~~--~~~-------------~~~~G~~~--~~~~~g~~~~~~~~~~~~~~~~-DGsv~v~~g~~e~GQG~~T~ 622 (848)
T TIGR03311 561 ETLLAVKEV--YEK-------------SPCAGIAC--AFKNSGVGVGIPDTGRCNLAVE-DGKVHIRTSAACIGQGLGTV 622 (848)
T ss_pred HHHHHHHHH--hhh-------------ccCCeEEE--EEEEeccccCCCCcceEEEEEc-CCEEEEEECCCCcCcCHHHH
Confidence 999999985 541 12355555 4444443211123466788887 99999999999999999999
Q ss_pred HHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhhhhhHHHHHhc
Q psy14054 263 MIQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA 310 (311)
Q Consensus 263 ~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~~~~g~Av~~A 310 (311)
++||+||+||||+|+|+|..+||+.+|++++|+|||+|++.|+||++|
T Consensus 623 ~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~aSR~t~~~G~Av~~A 670 (848)
T TIGR03311 623 LTQIVCETTGLPPEVIVCELPDTALTPDSGTTTASRQSLFTGEATRRA 670 (848)
T ss_pred HHHHHHHHHCCCHHHEEEEcCCCCCCCCCCCCchhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987
No 13
>COG4631 XdhB Xanthine dehydrogenase, molybdopterin-binding subunit B [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.7e-54 Score=407.71 Aligned_cols=289 Identities=40% Similarity=0.586 Sum_probs=275.0
Q ss_pred cCCccchhhhhhhccccCCceEEEcchHHHHhhcCCCCCeEEEEEEeeCCCCcEEEEEEEEEeecCCCCCchHHHHHHHH
Q psy14054 20 ANNEKPVNDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAI 99 (311)
Q Consensus 20 ~~~~~p~aa~~s~~~~~grPVkl~~tReE~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~~~ 99 (311)
++.-++++|+.+++ .+||||+..+|.|||..++|||++.+.|++|+|+||+|++++..+..++|...+++.++..+++
T Consensus 251 ~~~fAa~aA~aA~k--~~r~vk~RpdRdeDm~~TGKRHdF~v~y~vGfDdeGri~~v~~~~aarcGfS~DLSgpV~dRAl 328 (781)
T COG4631 251 ANQFAALAALAAKK--TGRPVKIRPDRDEDMTATGKRHDFHVDYEVGFDDEGRILGVDATLAARCGFSADLSGPVTDRAL 328 (781)
T ss_pred chHHHHHHHHHHHH--hCCceeecCCcchhhhhccCcCceEEEeeeccCCCCcEEEeeeehhhccCcccccCccchhhhe
Confidence 34445677887776 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCccCeEEEEEEEEEcCCCCcccccCCCchHHHHHHHHHHHHHHHHcCCCHHHHHHhhCCcCCC--cccccceec
Q psy14054 100 FHCTNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGN--LTHYNQVLE 177 (311)
Q Consensus 100 ~~~~~~Y~ipn~r~~~~~v~TN~~p~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~g~--~~~~g~~~~ 177 (311)
.++++.|-+|++++..+..+||+..+++|||||.||.++++|.+||++|..||+||+|+|++|+..++. .+|++++++
T Consensus 329 fH~DNaYf~p~v~~~s~~~kTntvSnTAfRGFGGPQGm~~~Eriid~vA~alGkdpleiRk~NfYg~~~~n~TpYhQ~Ve 408 (781)
T COG4631 329 FHADNAYFYPHVHILSRPLKTNTVSNTAFRGFGGPQGMLGIERIIDEVAYALGKDPLEIRKLNFYGKDGRNVTPYHQTVE 408 (781)
T ss_pred eccccceeccceeeecceeeccccccccccccCCcchhhHHHHHHHHHHHHhCCCHHHHHhhhccCCCCCccCccccchH
Confidence 999999999999999999999999999999999999999999999999999999999999999998765 588999999
Q ss_pred CCCHHHHHHHHHHcCChHHHHHHHHHHhhccCcceeeeEeeeEeeeccccccccCccceEEEEeeCCeEEEEeCCCCCCC
Q psy14054 178 HCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQ 257 (311)
Q Consensus 178 ~~~~~~~l~~~~e~~~w~~~~~~~~~~~~~~~~~~rGig~a~~~~g~~~~~~~~~~~~a~v~l~~dG~v~v~~g~~d~Gq 257 (311)
+..+.++++++.+.++|..|+.++..||...+..+|||++.+.+||.+|......+..+.|.+..||+|.+++|++||||
T Consensus 409 dnii~ri~~ELeaSsdyaaRr~~i~aFNa~spv~krGlAlTPVKFGISFt~t~~NQAGALVHvY~DGSi~lNHGGTEMGQ 488 (781)
T COG4631 409 DNIIARIVDELEASSDYAARREAIRAFNAASPVIKRGLALTPVKFGISFTATHYNQAGALVHVYTDGSIHLNHGGTEMGQ 488 (781)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHhhccChhhhccccccceeeeEEEeeeeeccCceEEEEeccCeEEEcCCCccccc
Confidence 88999999999999999999999999999888889999999999999987766788999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhhhhhHHHHHhc
Q psy14054 258 GIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA 310 (311)
Q Consensus 258 G~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~~~~g~Av~~A 310 (311)
|.+|.++|++|++|+|+.++|+|...+|+.+|+...|.+|.++...|+|++.|
T Consensus 489 GL~tKvaQVvA~~fqvd~~rVkitaT~T~KVpNTSaTAASSGsDLNGmAa~dA 541 (781)
T COG4631 489 GLYTKVAQVVAEEFQVDIDRVKITATTTDKVPNTSATAASSGSDLNGMAAQDA 541 (781)
T ss_pred chhHHHHHHHHHHhCcccceEEEeccccCCCCCCccccccccCCcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999876
No 14
>KOG0430|consensus
Probab=100.00 E-value=8.6e-54 Score=431.90 Aligned_cols=277 Identities=47% Similarity=0.753 Sum_probs=265.2
Q ss_pred hhhhhhccccCCceEEEcchHHHHhhcCCCCCeEEEEEEeeCCCCcEEEEEEEEEeecCCCCCchHHHHHHHHHhcCCCC
Q psy14054 27 NDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCTNSF 106 (311)
Q Consensus 27 aa~~s~~~~~grPVkl~~tReE~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~~~~~~~~~Y 106 (311)
+|+.|++ .+||||.+++|++||..+++|||+..+|++|+++||+|+|++.+++.|+|+-.+.++.++ +++.++...|
T Consensus 773 ~ALaA~K--l~RPvr~~l~r~~dM~itG~Rhp~~~~Ykvgf~~~GkI~aL~~~~~~naG~s~d~S~~~~-~~~~~~~n~Y 849 (1257)
T KOG0430|consen 773 AALAAYK--LNRPVRFVLSRESDMIITGKRHPFHGKYKVGFKSDGKILALDLEFYENAGWSKDESPSVL-RAMFHSDNVY 849 (1257)
T ss_pred HHHHHHH--hCCCEEEEecchhhhhhcCCccceEEeEEEEEccCCeEEEEehhhhhccCCCcCcchHHH-hhhhhhhhee
Confidence 3555554 699999999999999999999999999999999999999999999999999999888877 7888999999
Q ss_pred ccCeEEEEEEEEEcCCCCcccccCCCchHHHHHHHHHHHHHHHHcCCCHHHHHHhhCCcCCCcccccceecCCCHHHHHH
Q psy14054 107 YVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGRCFE 186 (311)
Q Consensus 107 ~ipn~r~~~~~v~TN~~p~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~g~~~~~g~~~~~~~~~~~l~ 186 (311)
++|++|++++.|.||.|..+||||||.||..+..|+.|.++|.++|+||.|+|++|+.++|+.++.++.++.+.+.+||+
T Consensus 850 ~~~~~r~~G~~ckTN~pSnTa~Rg~G~pQG~~i~E~iie~VA~~~g~d~eeVR~~N~y~eg~~~~~~~~~~~~~l~~~w~ 929 (1257)
T KOG0430|consen 850 EIGDVRFDGYVCKTNLPSNTAFRGPGSPQGILITENIIERIAFELGKDPEEVRKINFYVEGSLTYYHGELQHCTLPQLWP 929 (1257)
T ss_pred cccceeeeeeEEecCCCCcchhcCCCChhhHHHHHHHHHHHHHHhCCCHHHHhhhhhhhcccccccCCCcccCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHhhccCcceeeeEeeeEeeeccccccccCccceEEEEeeCCeEEEEeCCCCCCCChHHHHHHH
Q psy14054 187 QVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQV 266 (311)
Q Consensus 187 ~~~e~~~w~~~~~~~~~~~~~~~~~~rGig~a~~~~g~~~~~~~~~~~~a~v~l~~dG~v~v~~g~~d~GqG~~t~~~Qi 266 (311)
+..+.++|++|+.+.++||+.|+|++|||++.+..++.++. .+..+.|.|..||+|.|.+|++|||||.+|.++|+
T Consensus 930 ~~~~sS~y~~Rk~ev~~FN~~N~WrKRGi~~vp~~f~i~~~----~~~~a~V~Iy~DGSV~v~hgGiEmGQGL~TK~~Qv 1005 (1257)
T KOG0430|consen 930 ECLVSSKFEKRKSEIEEFNKENRWKKRGLAMVPMKFGISFT----GQAPALVHIYTDGTVVVTHGGIEMGQGLNTKVAQV 1005 (1257)
T ss_pred HHHHhchHHHHHHHHHHhhhcChhhhcCceEeeeecceecc----CCCceEEEEEcCCeEEEEECcEEcccchhHHHHHH
Confidence 99999999999999999999999999999999999998875 34789999999999999999999999999999999
Q ss_pred HHHHhCCCCCcEEEecCCCCCCCCCCCcccchhhhhhHHHHHhc
Q psy14054 267 AARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA 310 (311)
Q Consensus 267 ~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~~~~g~Av~~A 310 (311)
+|+.||||.+.|++...||+..|++.+|+||.++.+.|.||+.|
T Consensus 1006 aa~~l~ip~~~v~v~~tsT~~v~na~~Ta~S~~Sd~~g~AV~~~ 1049 (1257)
T KOG0430|consen 1006 AAYALGIPLSSVFVSETSTDKVPNASPTAASVSSDMYGAAVLDA 1049 (1257)
T ss_pred HHHHhCCcccceEEeecccccccCCCccccccccccccHHHHHH
Confidence 99999999999999999999999999999999999999999986
No 15
>COG1529 CoxL Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]
Probab=100.00 E-value=4e-47 Score=387.78 Aligned_cols=275 Identities=21% Similarity=0.217 Sum_probs=245.1
Q ss_pred chhh-hhhhccccCCceEEEcchHHHHhhcCCCCCeEEEEEEeeCCCCcEEEEEEEEEeecCCCCCchHHHHHHHHHhcC
Q psy14054 25 PVND-DLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103 (311)
Q Consensus 25 p~aa-~~s~~~~~grPVkl~~tReE~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~~~~~~~ 103 (311)
++.+ .+|+. .||||||+++|+|.|..+.+|++..+++++++++||+|++++++++.|.|+|. +..+.........
T Consensus 245 ~~~~~~aa~~--~grpVk~~~tR~e~~~~~~~~~~~~~~~~~~a~~dg~l~~~~~~~~~~~Gay~--~~~~~~~~~~~~~ 320 (731)
T COG1529 245 EILAALAAVV--AGRPVKWIETREELFVATGHRRATLIDVKLGADKDGRLLAIKGTVAADTGAYN--GPTVPAAAAGLAR 320 (731)
T ss_pred HHHHHHHHHh--cCCCeEEecchHHhhhccCCCCCceEEeeeecCcCCcEEeeeeeEEecCCCcc--ccchhHHHHHhcC
Confidence 3444 55544 79999999999999999999999999999999999999999999999999997 4444455667889
Q ss_pred CCCccCeEEEEEEEEEcCCCCcccccCCCchHHHHHHHHHHHHHHHHcCCCHHHHHHhhCCcCCCcccccceecCCCHHH
Q psy14054 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGR 183 (311)
Q Consensus 104 ~~Y~ipn~r~~~~~v~TN~~p~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~g~~~~~g~~~~~~~~~~ 183 (311)
++|+|+|.++..+.++||.+|+++|||+|.++.+|++|++||+||++|||||+|+|++|+++.|... ++..+++.++.+
T Consensus 321 g~Y~i~~~~~~~~~v~tn~~p~~~~Rg~g~~~~~~a~E~~~d~lA~~Lgidp~eiR~~n~~~~g~~~-~~~~~~~~~~~~ 399 (731)
T COG1529 321 GPYKIEAVYIEPYLVHTNMPPNGAYRGAGRPEGTFALERAVDELAEELGIDPVEIRLRNLIRGGPFG-LGRRYDSGDYLE 399 (731)
T ss_pred CceecccceeeeEEEEcCCCCCcccccCCCchhHHHHHHHHHHHHHHhCCCHHHHhhhhccccCCCC-CcccccCccHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987665 788889999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhccCcceeeeEeeeEeeeccccccccCccceEEEEeeCCeEEEEeCCCCCCCChHHHH
Q psy14054 184 CFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKM 263 (311)
Q Consensus 184 ~l~~~~e~~~w~~~~~~~~~~~~~~~~~~rGig~a~~~~g~~~~~~~~~~~~a~v~l~~dG~v~v~~g~~d~GqG~~t~~ 263 (311)
|+++++++++|.++..+..+.+.. ...+|+|++++.+.+.... .+.+.|+++.||++++.++..++|||++|++
T Consensus 400 ~~~~~ak~~~~~~~~~k~~~~re~--~~~~G~g~a~~~~~~~~~~----~~~a~v~~~~~g~v~v~~g~~~~G~G~~t~~ 473 (731)
T COG1529 400 ELDEAAKRFGWSERPVKPIWTREG--DLRRGVGRAMYTEPSGAGP----GEGARVRLEADGTVTVRTGATDIGQGTDTVL 473 (731)
T ss_pred HHHHHHHhcCcccccCChhhhhcC--CeeeeeEEEEEEEeccCCC----CCcEEEEEcCCCcEEEEECCccCCCcHHHHH
Confidence 999999999998655444433332 2457888888888777642 2679999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhhhhhHHHHHhc
Q psy14054 264 IQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA 310 (311)
Q Consensus 264 ~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~~~~g~Av~~A 310 (311)
+|+++|.||||.|+|++..+||+..+..++|+|||++.+.+.|++.|
T Consensus 474 ~q~~ae~lgip~~~V~v~~gDt~~~~~~~~s~GS~~~~~~~~A~~~a 520 (731)
T COG1529 474 AQIAAEELGIPPDDVEVVHGDTDVPVGGWGSVGSRGTAVAGSAVIDA 520 (731)
T ss_pred HHHHHHHhCCCHHHEEEEecCCCCCCCCCCCcCcccccchHHHHHHH
Confidence 99999999999999999999999988889999999999999999876
No 16
>COG1529 CoxL Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]
Probab=98.93 E-value=5.2e-10 Score=115.33 Aligned_cols=227 Identities=14% Similarity=0.036 Sum_probs=147.9
Q ss_pred eeeeccCCccchhhhhhhccc-cCCceEEEcchHHHHhhcCCCCCeEEEEEEeeC--------CCCcEEEEEEEEEeecC
Q psy14054 15 EVILDANNEKPVNDDLSEDEE-AVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFS--------KSGKLQVCEVWLYNNAG 85 (311)
Q Consensus 15 ~~~~~~~~~~p~aa~~s~~~~-~grPVkl~~tReE~~~~~~~R~~~~~~~~~g~d--------~dG~i~a~~~~~~~d~G 85 (311)
...+|+.+-..++..+++++. .+||+|..|+|+++++.+..++-.......+.+ .||++.......
T Consensus 389 ~~~~~~~~~~~~~~~~ak~~~~~~~~~k~~~~re~~~~~G~g~a~~~~~~~~~~~~~a~v~~~~~g~v~v~~g~~----- 463 (731)
T COG1529 389 GRRYDSGDYLEELDEAAKRFGWSERPVKPIWTREGDLRRGVGRAMYTEPSGAGPGEGARVRLEADGTVTVRTGAT----- 463 (731)
T ss_pred cccccCccHHHHHHHHHHhcCcccccCChhhhhcCCeeeeeEEEEEEEeccCCCCCcEEEEEcCCCcEEEEECCc-----
Confidence 345778887878888887741 129999999999999888777766555555553 455554433332
Q ss_pred CCCCchHHHHHHHHHhcCCCCccCeEEEEEEEEEcCCCCcccccCCCchHHHHHHHHHHHHHHHHcCCCHHHHHHhhCCc
Q psy14054 86 CSYDLSTAVMRRAIFHCTNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFV 165 (311)
Q Consensus 86 a~~~~~~~~~~~~~~~~~~~Y~ipn~r~~~~~v~TN~~p~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~ 165 (311)
.+++..-........-+|.||+-+++.....|. .|..+||.+|+..+.|+.|.+++++++..+.||..+|+..-..
T Consensus 464 ---~~G~G~~t~~~q~~ae~lgip~~~V~v~~gDt~-~~~~~~~s~GS~~~~~~~~A~~~a~~~l~~k~~~~aa~~l~~~ 539 (731)
T COG1529 464 ---DIGQGTDTVLAQIAAEELGIPPDDVEVVHGDTD-VPVGGWGSVGSRGTAVAGSAVIDAAAKLAEKDPVAAARMLGAD 539 (731)
T ss_pred ---cCCCcHHHHHHHHHHHHhCCCHHHEEEEecCCC-CCCCCCCCcCcccccchHHHHHHHHHHHHHHHHHHHHhhhCCC
Confidence 122211111222335578999999999888885 5888899999999999999999999999999999999985222
Q ss_pred CCCcccccceecCCCHHHHHHHHHHcCChHHHHHHHHHHhhccCcceeeeEeeeEeeeccccccccCccceEEEEe-eCC
Q psy14054 166 TGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIY-VDG 244 (311)
Q Consensus 166 ~g~~~~~g~~~~~~~~~~~l~~~~e~~~w~~~~~~~~~~~~~~~~~~rGig~a~~~~g~~~~~~~~~~~~a~v~l~-~dG 244 (311)
+ ..-.++.+.....|..+..........+..+.+|+.+... +++.. ........|+|+++ .+|
T Consensus 540 ~--------------~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~-~~~~~A~~~EV~Vd~~tG 603 (731)
T COG1529 540 A--------------EDVVLEDGAFKVGGGDRRSAVSLKEVAGKGLAPGLAVAAS-FGSDN-TYPYGAHIAEVEVDPETG 603 (731)
T ss_pred h--------------hHeeeccCeeeeccCCccceeeHHHhhhccccCccccccc-ccccc-cccceeEEEEEEEECCCC
Confidence 1 1225566666666643210000000001113466666542 22210 00124678999999 589
Q ss_pred eEEEE--eCCCCCCCChH--HHHHHH
Q psy14054 245 SVLIS--HCGTEMGQGIH--TKMIQV 266 (311)
Q Consensus 245 ~v~v~--~g~~d~GqG~~--t~~~Qi 266 (311)
+++|. +++.|+|.-++ .+-.|+
T Consensus 604 ~vrV~r~~~~~D~G~vvNP~~~~~Qv 629 (731)
T COG1529 604 EVRVLRVVAVDDCGRVVNPKLAEGQV 629 (731)
T ss_pred cEEEEEEEEEEecCCccCHHHHHHHH
Confidence 99997 89999998887 444666
No 17
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=92.44 E-value=0.83 Score=33.61 Aligned_cols=52 Identities=23% Similarity=0.284 Sum_probs=39.9
Q ss_pred eEEEEeeCCeEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCC
Q psy14054 236 ALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDK 287 (311)
Q Consensus 236 a~v~l~~dG~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~ 287 (311)
....++.||.+.|.+.+.+..-=.+..+...+|+.||+|..+|++..+.|+.
T Consensus 18 ~i~~~~~~~~l~i~v~app~~GkAN~ali~~La~~l~v~ks~i~i~~G~~Sr 69 (77)
T PF02594_consen 18 AIVGVEGDGALKIRVTAPPVDGKANKALIRFLAKALGVPKSDIEIVSGHTSR 69 (77)
T ss_dssp EEEEE-TTT-EEEEBSTTCCCCCHHHHHHHHHHHHCT--TTCEEECC-CCCS
T ss_pred ccccccCceEEEEEEecCCCcChhHHHHHHHHHHHhCCCcccEEEEecCCCC
Confidence 3346666689999998888877789999999999999999999999887763
No 18
>TIGR02965 xanthine_xdhB xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase.
Probab=85.53 E-value=1.9 Score=45.27 Aligned_cols=58 Identities=14% Similarity=0.129 Sum_probs=43.4
Q ss_pred CccceEEEEeeCCeEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhh
Q psy14054 232 NQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGS 300 (311)
Q Consensus 232 ~~~~a~v~l~~dG~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~ 300 (311)
+...+....++||+++|++++ |.. ..+.+.+|+.||+|+++|+|... +-+|.+|++..
T Consensus 175 Ep~~~vA~~~~~g~l~v~~st----Q~p-~~~r~~lA~~Lglp~~~VrV~~~------~vGGgFG~K~~ 232 (758)
T TIGR02965 175 EGQIALAVPGEDGGMHVWSST----QHP-SEVQHLVAHVLGVPSHAVTVEVR------RMGGGFGGKET 232 (758)
T ss_pred CCceEEEEEcCCCCEEEEECC----CCh-HHHHHHHHHHhCCChHHEEEEeC------CCccCcccccc
Confidence 456677777778999999755 333 45678899999999999999853 45677777754
No 19
>PRK00647 hypothetical protein; Validated
Probab=83.87 E-value=3.8 Score=31.46 Aligned_cols=46 Identities=13% Similarity=0.142 Sum_probs=41.4
Q ss_pred eCCeEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCC
Q psy14054 242 VDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDK 287 (311)
Q Consensus 242 ~dG~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~ 287 (311)
.++.+.|.+.+.+..--.|..+.+.+|+.||++-.+|.+..+.|+.
T Consensus 25 ~~~~Lkvrv~ApPvdGKAN~ali~~LAk~l~vpks~I~Iv~G~tSr 70 (96)
T PRK00647 25 EGGILKVRVTEVPEKGKANDAVIALLAKFLSLPKRDVTLIAGETSR 70 (96)
T ss_pred cCCEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCC
Confidence 3688999988888887789999999999999999999999998874
No 20
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit. This model represents the large subunits of group of carbon-monoxide dehydrogenases that include molybdenum as part of the enzymatic cofactor. There are various forms of carbon-monoxide dehydrogenase; Salicibacter pomeroyi DSS-3, for example, has two forms. Note that, at least in some species, the active site Cys is modified with a selenium attached to (rather than replacing) the sulfur atom. This is termed selanylcysteine, and created post-translationally, in contrast to selenocysteine incorporation during translation as for many other selenoproteins.
Probab=82.81 E-value=3.8 Score=43.21 Aligned_cols=58 Identities=14% Similarity=0.110 Sum_probs=43.0
Q ss_pred CccceEEEEee-CCeEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhh
Q psy14054 232 NQAGALVLIYV-DGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGS 300 (311)
Q Consensus 232 ~~~~a~v~l~~-dG~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~ 300 (311)
+...+....+. ||+++|++++ |... ...+.+|+.||+|+++|+|.. |+-+|.+|++..
T Consensus 190 Ep~~~iA~~~~~~g~l~v~~st----Q~p~-~~r~~vA~~Lglp~~~VrV~~------~~vGGgFG~K~~ 248 (770)
T TIGR02416 190 ETCGCVASMDPIKGELTLWGTF----QAPH-VIRTVVSLISGLPEHKIRVIS------PDIGGGFGNKVG 248 (770)
T ss_pred CCCeEEEEEeCCCCeEEEEECC----CcHH-HHHHHHHHHhCCCHHHEEEEc------CCCCCCcccccc
Confidence 45667777775 6999999754 4333 347888899999999999985 445677777753
No 21
>PRK09970 xanthine dehydrogenase subunit XdhA; Provisional
Probab=82.68 E-value=2.7 Score=44.25 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=42.8
Q ss_pred CccceEEEEeeCCeEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchh
Q psy14054 232 NQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVG 299 (311)
Q Consensus 232 ~~~~a~v~l~~dG~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~ 299 (311)
+...+....++||+++|+++. |.. ..+.+.+|+.||+|.++|+|.. |+-+|++|++.
T Consensus 193 Ep~~~iA~~~~~g~l~v~~st----Q~p-~~~~~~ia~~Lglp~~~VrV~~------~~vGGgFG~K~ 249 (759)
T PRK09970 193 ENVTSYAYMEDDGRITIVSST----QIP-HIVRRVVGQALGIPWGKVRVIK------PYVGGGFGNKQ 249 (759)
T ss_pred CCceEEEEECCCCCEEEEECC----CcH-HHHHHHHHHHhCCCHHHEEEEe------CCCCCCcCccc
Confidence 456677777777999999744 333 4457889999999999999985 34567777774
No 22
>PRK05090 hypothetical protein; Validated
Probab=82.24 E-value=4 Score=31.27 Aligned_cols=46 Identities=4% Similarity=0.181 Sum_probs=40.7
Q ss_pred eCCeEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCC
Q psy14054 242 VDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDK 287 (311)
Q Consensus 242 ~dG~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~ 287 (311)
.++.+.|.+.+.+.--=.+..+...+|+.||++..+|.+..+.|+.
T Consensus 30 ~~~~lkv~v~ApPveGkAN~ali~~LAk~l~v~ks~I~i~~G~tsr 75 (95)
T PRK05090 30 HGDELKVAITAPPVDGQANAHLLKFLAKQFRVAKSQVVIEKGELGR 75 (95)
T ss_pred cCCEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCC
Confidence 4788999988888776789999999999999999999999998864
No 23
>PF02738 Ald_Xan_dh_C2: Molybdopterin-binding domain of aldehyde dehydrogenase; InterPro: IPR008274 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3NVZ_C 3NVY_C 1FO4_B 3NRZ_L 3AM9_A 3B9J_C 3AX7_B 3NVW_L 3BDJ_A 3ETR_N ....
Probab=81.91 E-value=4.6 Score=40.69 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=35.0
Q ss_pred CccceEEEEeeCCeEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecC
Q psy14054 232 NQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINET 283 (311)
Q Consensus 232 ~~~~a~v~l~~dG~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~ 283 (311)
+...+....++||.++|+++++ .-..+...+|+.||+|+++|+|...
T Consensus 49 Ep~~~~A~~~~~g~l~v~~~tQ-----~p~~~r~~va~~lglp~~~V~V~~~ 95 (547)
T PF02738_consen 49 EPHGAVAWWDEDGRLTVWSSTQ-----WPFHVRRAVAEALGLPPEKVRVISP 95 (547)
T ss_dssp S-SEEEEEEETTTEEEEEES-S-----SHHHHHHHHHHHHTS-GGGEEEEES
T ss_pred CCCeEEEEEccCCCEEEEECCc-----CHhHHHHHHhhhhcCChhHEEEeee
Confidence 5566777776799999997542 3355678889999999999999853
No 24
>PRK01530 hypothetical protein; Reviewed
Probab=81.70 E-value=3.9 Score=31.95 Aligned_cols=45 Identities=13% Similarity=0.009 Sum_probs=39.5
Q ss_pred CCeEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCC
Q psy14054 243 DGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDK 287 (311)
Q Consensus 243 dG~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~ 287 (311)
++.+.|.+.+.+.--=.+..+...+|+.|||+..+|++..+.|+.
T Consensus 38 ~~~Lki~v~ApPvdGkAN~ali~~LAk~l~v~ks~I~IvsG~tSR 82 (105)
T PRK01530 38 IPYLKLSIKAIPEQGKANEEIINYLAKEWKLSRSNIEIIKGHTHS 82 (105)
T ss_pred CCEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCC
Confidence 468999988877776688999999999999999999999998864
No 25
>TIGR03194 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha subunit. This model represents the largest chain, alpha, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=81.51 E-value=4.2 Score=42.72 Aligned_cols=58 Identities=14% Similarity=0.008 Sum_probs=43.0
Q ss_pred CccceEEEEee-CCeEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhh
Q psy14054 232 NQAGALVLIYV-DGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGS 300 (311)
Q Consensus 232 ~~~~a~v~l~~-dG~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~ 300 (311)
+...+....++ +|+++|+++. |.. ..+.+.+|+.||+|.++|+|.. |.-+|++|++..
T Consensus 178 Ep~~~~A~~~~~~~~l~v~~st----Q~p-~~~r~~va~~Lglp~~kVrV~~------~~vGGgFG~K~~ 236 (746)
T TIGR03194 178 EPNATLAEYDPVRGMLTLNSVT----QVP-YYVHLKLARCLQMDSARIRVIK------PFLGGGFGARVE 236 (746)
T ss_pred CCCeEEEEEeCCCCeEEEEECC----Cch-HHHHHHHHHHhCCCHHHeEEEc------CCCcCccccccc
Confidence 45677777765 6899999755 323 4567888999999999999984 345677777744
No 26
>PLN00192 aldehyde oxidase
Probab=80.09 E-value=3.8 Score=45.89 Aligned_cols=58 Identities=19% Similarity=0.149 Sum_probs=43.1
Q ss_pred CccceEEEEeeCCeEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhh
Q psy14054 232 NQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGS 300 (311)
Q Consensus 232 ~~~~a~v~l~~dG~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~ 300 (311)
+...+....++||.++|++++ | .-....+.+|+.||||+++|+|.. +.-+|.+|++.+
T Consensus 762 Ep~~~vA~~~~dg~l~V~~sT----Q-~p~~~r~~vA~~Lgip~~~VrV~~------~~vGGgFGgK~~ 819 (1344)
T PLN00192 762 ETQTALALPDEDNCIVVYSST----Q-CPEYVHSVIARCLGIPEHNVRVIT------RRVGGGFGGKAV 819 (1344)
T ss_pred cCceEEEEEcCCCCEEEEECC----C-CHHHHHHHHHHHhCCChHHEEEEe------cccccCCCcccc
Confidence 456677777778999999755 2 225567889999999999999985 345677777743
No 27
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=78.81 E-value=4.1 Score=42.93 Aligned_cols=58 Identities=21% Similarity=0.141 Sum_probs=42.0
Q ss_pred CccceEEEEeeCCeEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhh
Q psy14054 232 NQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGS 300 (311)
Q Consensus 232 ~~~~a~v~l~~dG~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~ 300 (311)
+...+....++||+++|++++ |.. ..+...+|+.||+|+++|+|... +-+|.+|++..
T Consensus 183 Ep~~~~A~~~~~g~l~v~~st----Q~p-~~~r~~lA~~Lglp~~~VrV~~~------~vGGgFG~K~~ 240 (768)
T TIGR03196 183 APEAALAMPAADGGFDLRAAT----QHG-HKDREQIAACFDIPEEKIRITLA------GMGGAFGGKDD 240 (768)
T ss_pred CCceEEEEEcCCCCEEEEECC----Cch-HHHHHHHHHHhCCCHHHEEEEeC------CCCCccCCccc
Confidence 456677777778999999755 333 34577888999999999999853 45566666643
No 28
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=75.70 E-value=5.7 Score=42.90 Aligned_cols=57 Identities=9% Similarity=0.007 Sum_probs=42.0
Q ss_pred CccceEEEEeeCCeEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhh
Q psy14054 232 NQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGS 300 (311)
Q Consensus 232 ~~~~a~v~l~~dG~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~ 300 (311)
+...+....+ +|+++|++++ |.. ..+.+.+|+.||+|.++|+|.. ++.+|++|++..
T Consensus 390 Ep~~aiA~~d-~~~l~V~~st----Q~p-~~~r~~vA~~Lglp~~kVrV~~------~~vGGgFG~K~~ 446 (951)
T TIGR03313 390 ETHICFTYMD-GERLVIHAST----QVP-WHVRRQVARIVGMKQHKVHVIK------ERVGGGFGSKQD 446 (951)
T ss_pred CCceEEEEEc-CCeEEEEECC----cCH-HHHHHHHHHHHCCCHHHeEEEc------CCCCcCcCCccc
Confidence 4556666665 5689998754 333 4568889999999999999984 456777888753
No 29
>PLN02906 xanthine dehydrogenase
Probab=75.15 E-value=7 Score=43.77 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=42.3
Q ss_pred CccceEEEEeeC-CeEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhh
Q psy14054 232 NQAGALVLIYVD-GSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGS 300 (311)
Q Consensus 232 ~~~~a~v~l~~d-G~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~ 300 (311)
+...+....++| |.++|+++++. . ..+...+|+.||||+++|+|.. |.-+|.+|++..
T Consensus 741 Ep~~~~A~~~~~~g~l~v~~sTQ~----p-~~~r~~vA~~Lgip~~kVrV~~------~~vGGgFGgK~~ 799 (1319)
T PLN02906 741 EPNSSLVWTSDSGNEVHMISSTQA----P-QKHQKYVAHVLGLPMSKVVCKT------KRIGGGFGGKET 799 (1319)
T ss_pred CCCeEEEEEeCCCCEEEEEECCcC----H-HHHHHHHHHHhCCChHHeEEEe------CCcccCcccccc
Confidence 456666666667 68999975532 2 4567889999999999999985 345667777755
No 30
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=74.25 E-value=7.2 Score=43.73 Aligned_cols=58 Identities=12% Similarity=0.057 Sum_probs=42.4
Q ss_pred CccceEEEEee-CCeEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhh
Q psy14054 232 NQAGALVLIYV-DGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGS 300 (311)
Q Consensus 232 ~~~~a~v~l~~-dG~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~ 300 (311)
+...+....+. ||+++|++++ |.. ....+.+|+.||+|.++|+|.. +.-+|.+|++..
T Consensus 746 Ep~~~~A~~~~~~g~l~V~~st----Q~p-~~~r~~vA~~Lglp~~kVrV~~------~~vGGgFG~K~~ 804 (1330)
T TIGR02969 746 ETQSMLVVPKGEDQEMDVYVST----QFP-KYIQDIVAATLKLPVNKVMCHV------RRVGGAFGGKVG 804 (1330)
T ss_pred CCCEEEEEEeCCCCeEEEEECC----cCH-HHHHHHHHHHhCCCHHHeEEEe------CCcccCcccccc
Confidence 45666666664 5899999755 333 4567889999999999999985 345667777765
No 31
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=72.17 E-value=3.2 Score=32.81 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhCCCCCcEEEecCCCC
Q psy14054 260 HTKMIQVAARGLNIPAELIFINETATD 286 (311)
Q Consensus 260 ~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~ 286 (311)
...+.+++.++||||+|+|-|...|..
T Consensus 78 s~~i~~~l~~~LgIp~dRiYI~f~d~~ 104 (113)
T PTZ00450 78 TPRITAAITKECGIPAERIYVFYYSTK 104 (113)
T ss_pred HHHHHHHHHHHcCCCcccEEEEEEcHH
Confidence 467899999999999999999988753
No 32
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=70.54 E-value=3.6 Score=32.37 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhCCCCCcEEEecCCCCC
Q psy14054 260 HTKMIQVAARGLNIPAELIFINETATDK 287 (311)
Q Consensus 260 ~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~ 287 (311)
...++..+++.|||++++|.|...|...
T Consensus 78 ~~~i~~~l~~~lgi~~~rv~I~f~~~~~ 105 (116)
T PTZ00397 78 AAAITKILASHLKVKSERVYIEFKDCSA 105 (116)
T ss_pred HHHHHHHHHHHhCcCcccEEEEEEECCh
Confidence 3678999999999999999999877664
No 33
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=69.60 E-value=7.2 Score=30.76 Aligned_cols=43 Identities=30% Similarity=0.451 Sum_probs=29.5
Q ss_pred cceEEEEe-eCCeEEEEeCCCCCCCChHHHHHHHHHHH---hCCCCCcEEEecCCCC
Q psy14054 234 AGALVLIY-VDGSVLISHCGTEMGQGIHTKMIQVAARG---LNIPAELIFINETATD 286 (311)
Q Consensus 234 ~~a~v~l~-~dG~v~v~~g~~d~GqG~~t~~~Qi~Ae~---Lgi~~~~V~v~~~dT~ 286 (311)
..+.+.++ .||+|.|..-.+|.| +|++ +|||.++|.+-.-...
T Consensus 55 ~g~~iH~dI~dgKIWIq~d~TE~g----------Ia~eLve~GVpk~dIVLgF~~P~ 101 (111)
T PF08869_consen 55 HGCLIHLDIKDGKIWIQRDGTEDG----------IAEELVEAGVPKEDIVLGFHPPE 101 (111)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSH----------HHHHHHHTT--GGGEEETTS-GG
T ss_pred EEEEEEEEEECCeEEEEcCchhhH----------HHHHHHHcCCCHHHEEEccCCcc
Confidence 45666666 699999999888887 2333 4999999998654333
No 34
>PRK01310 hypothetical protein; Validated
Probab=67.26 E-value=16 Score=28.51 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=36.9
Q ss_pred eEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCC
Q psy14054 245 SVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDK 287 (311)
Q Consensus 245 ~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~ 287 (311)
.+.|.+.+.+.--=.|..+...+|+.|||+..+|++..+-|+.
T Consensus 39 ~lkv~v~apPv~GkAN~ali~~LA~~l~v~ks~I~iv~G~tsR 81 (104)
T PRK01310 39 VLKVRVRAVPEGGEANRALIELLAKALGVPKSSVRLLSGATSR 81 (104)
T ss_pred EEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCC
Confidence 6788877777765688999999999999999999999988764
No 35
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=66.97 E-value=16 Score=39.00 Aligned_cols=57 Identities=19% Similarity=0.144 Sum_probs=39.8
Q ss_pred CccceEEEEeeCCeEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhh
Q psy14054 232 NQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGS 300 (311)
Q Consensus 232 ~~~~a~v~l~~dG~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~ 300 (311)
+...+....+ +|+++|++++ |.. ....+.+|+.||+|+++|+|... +-+|.+|++..
T Consensus 343 Ep~~~vA~~~-~~~l~v~~st----Q~p-~~~r~~vA~~Lglp~~~VrV~~~------~vGGgFG~K~~ 399 (848)
T TIGR03311 343 EPESALAVPE-GDGVIIYTST----QGV-YDEQRELASLLGLPKEKIRVINK------FVGGGFGGKED 399 (848)
T ss_pred CCceEEEEEe-CCeEEEEECC----cCH-HHHHHHHHHHhCCChHHEEEEeC------CCCCcCCcccc
Confidence 4555666665 6679999754 333 44577889999999999999854 44566666643
No 36
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=65.54 E-value=14 Score=40.06 Aligned_cols=56 Identities=9% Similarity=0.004 Sum_probs=40.5
Q ss_pred CccceEEEEeeCCeEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchh
Q psy14054 232 NQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVG 299 (311)
Q Consensus 232 ~~~~a~v~l~~dG~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~ 299 (311)
+...+....+ +|+++|++++ |.. ....+.+|+.||+|+++|+|.. +.-+|.+|++.
T Consensus 394 Ep~~aiA~~d-~~~l~v~~st----Q~p-~~~r~~vA~~LGlp~~kVrV~~------~~vGGgFG~K~ 449 (956)
T PRK09800 394 ETHICFTRMD-GDRLVIHAST----QVP-WHLRRQVARLVGMKQHKVHVIK------ERVGGGFGSKQ 449 (956)
T ss_pred CCceEEEEEe-CCeeEEEECC----CcH-HHHHHHHHHHHCCCHHHeEEEc------CCCCccCcCcc
Confidence 4556666665 4689998644 333 5568889999999999999985 34566777775
No 37
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=64.56 E-value=5.9 Score=26.55 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=14.6
Q ss_pred HHHHHHcCCCHHHHHHh
Q psy14054 145 HHVAQFLKLDYADFARS 161 (311)
Q Consensus 145 DelA~~lg~DP~e~R~~ 161 (311)
.+||+.+|++|..+|+.
T Consensus 32 ~~La~~~gi~~~qVRKD 48 (50)
T PF06971_consen 32 QELAEALGITPAQVRKD 48 (50)
T ss_dssp HHHHHHHTS-HHHHHHH
T ss_pred HHHHHHHCCCHHHhccc
Confidence 58999999999999985
No 38
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=63.86 E-value=13 Score=32.22 Aligned_cols=47 Identities=26% Similarity=0.363 Sum_probs=32.8
Q ss_pred cceEEEEeeCCeEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEe
Q psy14054 234 AGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFIN 281 (311)
Q Consensus 234 ~~a~v~l~~dG~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~ 281 (311)
..|.|.++ |+++.|.+-..++..--...+..|+.+.+||+.++|+|.
T Consensus 150 ~davv~~~-~~~v~VvV~~~~L~~~~~~~I~diV~~~~~v~~~~I~V~ 196 (196)
T PF12685_consen 150 EDAVVFIE-DDSVDVVVKADKLSDAEAAQIIDIVMRETGVPAENISVT 196 (196)
T ss_dssp SEEEEE-S-SSEEEEEEE-S---HHHHHHHHHHHHHHHC-STSEEEEE
T ss_pred CceEEEee-CCEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCcCeEEeC
Confidence 45677774 668888877766666556788999999999999999983
No 39
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=62.39 E-value=5.7 Score=27.57 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhCCCCCcEEEecCCCC
Q psy14054 260 HTKMIQVAARGLNIPAELIFINETATD 286 (311)
Q Consensus 260 ~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~ 286 (311)
-..+.+.+++.||+|+++|.|...+..
T Consensus 21 ~~~it~~l~~~lg~p~~~v~V~i~e~~ 47 (64)
T PRK01964 21 IREVTEAISATLDVPKERVRVIVNEVP 47 (64)
T ss_pred HHHHHHHHHHHhCcChhhEEEEEEEcC
Confidence 367789999999999999999876544
No 40
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=56.04 E-value=12 Score=25.04 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCCCCcEEEecCCCC
Q psy14054 261 TKMIQVAARGLNIPAELIFINETATD 286 (311)
Q Consensus 261 t~~~Qi~Ae~Lgi~~~~V~v~~~dT~ 286 (311)
..+.+.+++.||+++++|.|...+..
T Consensus 21 ~~i~~~l~~~~g~~~~~v~V~i~e~~ 46 (58)
T cd00491 21 ERVTEAVSEILGAPEATIVVIIDEMP 46 (58)
T ss_pred HHHHHHHHHHhCcCcccEEEEEEEeC
Confidence 57788999999999999999876544
No 41
>COG1872 Uncharacterized conserved protein [Function unknown]
Probab=55.55 E-value=44 Score=25.94 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=38.7
Q ss_pred EEeeCC-eEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCC
Q psy14054 239 LIYVDG-SVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDK 287 (311)
Q Consensus 239 ~l~~dG-~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~ 287 (311)
.++.+. .+.|.+.+.+..-=.+..+....|+.|++|-.+|.+..+-|..
T Consensus 30 g~~~~~~~Lkv~i~apP~~GKAN~~li~~Lak~~~v~kS~V~ivsGetsR 79 (102)
T COG1872 30 GLDEWRKRLKVRITAPPVDGKANEELIKFLAKTFGVPKSSVEIVSGETSR 79 (102)
T ss_pred ceecCcceEEEEEecCCCCcchhHHHHHHHHHHhCCCcccEEEEecCccc
Confidence 455443 3888876666655578899999999999999999999988763
No 42
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=54.54 E-value=60 Score=24.03 Aligned_cols=47 Identities=21% Similarity=0.235 Sum_probs=33.8
Q ss_pred eEEEEeeCCeEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCC
Q psy14054 236 ALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATD 286 (311)
Q Consensus 236 a~v~l~~dG~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~ 286 (311)
+.|++.=.++|.|.+ ..|. .-..+.+.+++.|++++|.|.+.+-|-+
T Consensus 3 ~vvKV~f~~tIaIrv---p~~~-~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 3 YVVKVHFKYTVAIQV---ARGL-SYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred eEEEEEEEEEEEEEc---CCCC-CHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 445555344777773 3332 3488999999999999999999887655
No 43
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=53.09 E-value=5.8 Score=31.15 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhCCCCCcEEEecCCCC
Q psy14054 261 TKMIQVAARGLNIPAELIFINETATD 286 (311)
Q Consensus 261 t~~~Qi~Ae~Lgi~~~~V~v~~~dT~ 286 (311)
..+...+.++||||+++|.|...|-+
T Consensus 77 ~~i~~~l~~~LgIp~~Riyi~f~d~~ 102 (114)
T PF01187_consen 77 AAITEFLEEELGIPPDRIYINFHDLP 102 (114)
T ss_dssp HHHHHHHHHHHT--GGGEEEEEEEET
T ss_pred HHHHHHHHHHhCCCcCceEEEEEECC
Confidence 57789999999999999999887655
No 44
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=52.74 E-value=13 Score=25.56 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCccc
Q psy14054 261 TKMIQVAARGLNIPAELIFINETATDKVPNASPTAA 296 (311)
Q Consensus 261 t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~ 296 (311)
..+.+.+++.||+|++.|.|...+-. +.+++.+|
T Consensus 22 ~~it~a~~~~~~~p~~~v~V~i~ev~--~~~~~~~g 55 (60)
T PRK02289 22 REVTEVVSRIAKAPKEAIHVFINDMP--EGTYYPQG 55 (60)
T ss_pred HHHHHHHHHHhCcCcceEEEEEEEeC--hhheEECC
Confidence 56688899999999999999876543 23344444
No 45
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=52.65 E-value=10 Score=25.86 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhCCCCCcEEEecCCCC
Q psy14054 261 TKMIQVAARGLNIPAELIFINETATD 286 (311)
Q Consensus 261 t~~~Qi~Ae~Lgi~~~~V~v~~~dT~ 286 (311)
..+.+.+++.||+|+++|.|...+.+
T Consensus 22 ~~it~~l~~~~~~p~~~v~V~i~e~~ 47 (61)
T PRK02220 22 KDVTAAVSKNTGAPAEHIHVIINEMS 47 (61)
T ss_pred HHHHHHHHHHhCcChhhEEEEEEEeC
Confidence 56788899999999999999876544
No 46
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=51.91 E-value=34 Score=22.64 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=22.3
Q ss_pred EEEEeeCCeEEEEeCCCCCCCChH-HHHHHHHHHHhCC
Q psy14054 237 LVLIYVDGSVLISHCGTEMGQGIH-TKMIQVAARGLNI 273 (311)
Q Consensus 237 ~v~l~~dG~v~v~~g~~d~GqG~~-t~~~Qi~Ae~Lgi 273 (311)
+++|.+||+|++.+-+. .|.. ..+.+.+-+.||.
T Consensus 2 ~~~I~~dG~V~~~v~G~---~G~~C~~~t~~lE~~LG~ 36 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVEGF---KGSSCLEATAALEEALGT 36 (48)
T ss_pred EEEECCCcEEEEEEEec---cChhHHHHHHHHHHHhCc
Confidence 67899999999986221 3444 4445555667764
No 47
>TIGR00251 conserved hypothetical protein TIGR00251.
Probab=51.18 E-value=64 Score=24.22 Aligned_cols=41 Identities=7% Similarity=0.033 Sum_probs=35.6
Q ss_pred CeEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCC
Q psy14054 244 GSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDK 287 (311)
Q Consensus 244 G~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~ 287 (311)
|.+.|.+.+.+.--=.+..+...+|+.|++ +|.+..+-|+.
T Consensus 31 ~~Lki~v~ApP~~GkAN~ali~~La~~l~v---~I~i~~G~tsR 71 (87)
T TIGR00251 31 KRVEVKIKAPPVEGKANRELIKFFGEIFGV---DVEIVSGELSR 71 (87)
T ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHhCc---eEEEEecCCCC
Confidence 789999888877767899999999999999 89999887763
No 48
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=51.14 E-value=12 Score=25.57 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCCCCCcEEEecCCCC
Q psy14054 261 TKMIQVAARGLNIPAELIFINETATD 286 (311)
Q Consensus 261 t~~~Qi~Ae~Lgi~~~~V~v~~~dT~ 286 (311)
..+.+.+++.||+++++|.|...+.+
T Consensus 22 ~~it~~l~~~lg~~~~~v~V~i~e~~ 47 (63)
T TIGR00013 22 EGVTEAMAETLGANLESIVVIIDEMP 47 (63)
T ss_pred HHHHHHHHHHhCCCcccEEEEEEEcC
Confidence 56788999999999999999876554
No 49
>PRK04021 hypothetical protein; Reviewed
Probab=47.14 E-value=63 Score=24.53 Aligned_cols=42 Identities=10% Similarity=0.121 Sum_probs=36.1
Q ss_pred CCeEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCC
Q psy14054 243 DGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDK 287 (311)
Q Consensus 243 dG~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~ 287 (311)
+|.+.|.+.+.+..--.+..+....|+.||+ +|.+..+.|+.
T Consensus 31 ~~~lkv~v~apP~~GkAN~ali~~LAk~l~~---~I~I~~G~~sr 72 (92)
T PRK04021 31 RGRLKVKIKAPPVKGKANKELVKFFSKLLGA---EVEIIRGETSR 72 (92)
T ss_pred CCEEEEEEecCCCCChHHHHHHHHHHHHhCC---CEEEEecCCcC
Confidence 5889999888888777899999999999998 69998887763
No 50
>PF06903 VirK: VirK protein; InterPro: IPR010694 This family consists of several bacterial VirK proteins of around 145 residues in length. The function of this family is unknown [].
Probab=46.99 E-value=28 Score=26.89 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=39.0
Q ss_pred hhhhhccccCCceEEEcchHHHHhhcCCCCCeEEEEEEe-----eCCCCcEEEEEEEEEeec
Q psy14054 28 DDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVG-----FSKSGKLQVCEVWLYNNA 84 (311)
Q Consensus 28 a~~s~~~~~grPVkl~~tReE~~~~~~~R~~~~~~~~~g-----~d~dG~i~a~~~~~~~d~ 84 (311)
..|-.+|..||+|.++.+-....-.+..-|+...+--+. +..||.|..-+.++..+.
T Consensus 7 ~~i~~AL~~Gk~V~v~iDls~Ct~~~~~~~~s~t~Gg~~i~ayrI~~D~tlaFSd~HfTv~~ 68 (100)
T PF06903_consen 7 AAILQALDAGKNVTVVIDLSQCTPEGEGTPPSKTRGGLRIDAYRITPDGTLAFSDTHFTVDN 68 (100)
T ss_pred HHHHHHHHcCCeEEEEEEHHHCccCCCCCCCcccCcccceeeEEEeCCCeEEEecceEEECC
Confidence 445567789999999999887766644444444433222 246889988888887764
No 51
>COG0245 IspF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Lipid metabolism]
Probab=46.87 E-value=56 Score=27.40 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=29.6
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCCCCC
Q psy14054 253 TEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPN 290 (311)
Q Consensus 253 ~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~ 290 (311)
.-++. ....+.+-+|+.|++++++|.|....|+...+
T Consensus 103 PK~~P-~~~amr~~ia~~L~i~~~~invKatT~E~LGf 139 (159)
T COG0245 103 PKLGP-YREAMRANIAELLGIPVDRINVKATTTEKLGF 139 (159)
T ss_pred Ccccc-hHHHHHHHHHHHhCCCchheEEEEeccCcccc
Confidence 44553 67889999999999999999999877765443
No 52
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=41.15 E-value=21 Score=24.32 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCCCCCcEEEecCCCC
Q psy14054 261 TKMIQVAARGLNIPAELIFINETATD 286 (311)
Q Consensus 261 t~~~Qi~Ae~Lgi~~~~V~v~~~dT~ 286 (311)
..+.+.+.+.||+++++|.|...+..
T Consensus 22 ~~it~~l~~~~~~p~~~v~V~i~e~~ 47 (62)
T PRK00745 22 EEITRVTVETLGCPPESVDIIITDVK 47 (62)
T ss_pred HHHHHHHHHHcCCChhHEEEEEEEcC
Confidence 56788889999999999999876544
No 53
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=39.13 E-value=11 Score=27.99 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhCCCCCcEEEecCCCC
Q psy14054 261 TKMIQVAARGLNIPAELIFINETATD 286 (311)
Q Consensus 261 t~~~Qi~Ae~Lgi~~~~V~v~~~dT~ 286 (311)
..+++-+++.+||++++|.|....+.
T Consensus 50 ~~l~~~L~~~~gi~p~Dv~I~l~e~~ 75 (82)
T PF14552_consen 50 RALAERLAEKLGIRPEDVMIVLVENP 75 (82)
T ss_dssp HHHHHHHHHHH---GGGEEEEEEEE-
T ss_pred HHHHHHHHHHcCCCHHHEEEEEEECC
Confidence 45677778889999999999875544
No 54
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=38.63 E-value=33 Score=21.40 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=15.0
Q ss_pred HHHHHHHHHcCCCHHHHHHh
Q psy14054 142 TMGHHVAQFLKLDYADFARS 161 (311)
Q Consensus 142 ~~mDelA~~lg~DP~e~R~~ 161 (311)
--++++|+.+|++|--|++.
T Consensus 9 ~~l~~iA~~~g~S~~~f~r~ 28 (42)
T PF00165_consen 9 LTLEDIAEQAGFSPSYFSRL 28 (42)
T ss_dssp --HHHHHHHHTS-HHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHH
Confidence 35789999999999988875
No 55
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=37.95 E-value=30 Score=26.01 Aligned_cols=52 Identities=17% Similarity=0.052 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHcCCCHH---HHHHhhCCcCCCccccccee-cCCCHHHHHHHHHHcCCh
Q psy14054 138 LIAETMGHHVAQFLKLDYA---DFARSNLFVTGNLTHYNQVL-EHCTLGRCFEQVHESGKY 194 (311)
Q Consensus 138 fa~E~~mDelA~~lg~DP~---e~R~~Nl~~~g~~~~~g~~~-~~~~~~~~l~~~~e~~~w 194 (311)
.-++-++.++|+++|+|.. .|.++-+-++|+... + .+.+|.+|++-++ .++|
T Consensus 21 ~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~Vl----lT~D~DL~e~v~iar-~~g~ 76 (86)
T cd06409 21 ESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVL----ITSDSDLVAAVLVAR-SAGL 76 (86)
T ss_pred CCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEEE----EeccchHHHHHHHHH-HcCC
Confidence 4578899999999999985 788887766665311 2 2468999998765 3454
No 56
>COG3423 Nlp Predicted transcriptional regulator [Transcription]
Probab=34.77 E-value=17 Score=26.58 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=15.7
Q ss_pred HHHHHHHHHhCCCCCcEEE
Q psy14054 262 KMIQVAARGLNIPAELIFI 280 (311)
Q Consensus 262 ~~~Qi~Ae~Lgi~~~~V~v 280 (311)
..-+|+|++||++|+.|=.
T Consensus 48 kgEriIA~algv~P~eIWp 66 (82)
T COG3423 48 KGERIIADALGVPPEEIWP 66 (82)
T ss_pred hHHHHHHHHhCCCHHHhCc
Confidence 3468999999999998854
No 57
>PRK01271 4-oxalocrotonate tautomerase; Provisional
Probab=34.63 E-value=36 Score=24.85 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHhCCCCCcEEEecCCC
Q psy14054 259 IHTKMIQVAARGLNIPAELIFINETAT 285 (311)
Q Consensus 259 ~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT 285 (311)
+-..+.+.+++.||++++.|.|...+-
T Consensus 21 La~~iT~a~~~~lg~~~e~v~V~I~ev 47 (76)
T PRK01271 21 LAADITDVIIRHLNSKDSSISIALQQI 47 (76)
T ss_pred HHHHHHHHHHHHhCcCcceEEEEEEEc
Confidence 346778999999999999999986543
No 58
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=33.79 E-value=40 Score=22.76 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhCCCCCcEEEecCC
Q psy14054 261 TKMIQVAARGLNIPAELIFINETA 284 (311)
Q Consensus 261 t~~~Qi~Ae~Lgi~~~~V~v~~~d 284 (311)
..+.+.+.+.||++++.|.|...+
T Consensus 21 ~~it~~~~~~lg~~~~~i~V~i~E 44 (60)
T PF01361_consen 21 EAITDAVVEVLGIPPERISVVIEE 44 (60)
T ss_dssp HHHHHHHHHHHTS-GGGEEEEEEE
T ss_pred HHHHHHHHHHhCcCCCeEEEEEEE
Confidence 466888999999999999997643
No 59
>COG4631 XdhB Xanthine dehydrogenase, molybdopterin-binding subunit B [Nucleotide transport and metabolism]
Probab=32.98 E-value=89 Score=31.62 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=34.4
Q ss_pred cceEEEEeeCCeEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEec
Q psy14054 234 AGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINE 282 (311)
Q Consensus 234 ~~a~v~l~~dG~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~ 282 (311)
..+...-.+||.|+|++++ -+-|-+..++|+.||+|-..|.|..
T Consensus 194 qia~a~p~Ed~~v~v~~ST-----QhPtE~Q~~vahvLGvpsn~VtV~~ 237 (781)
T COG4631 194 QIALAVPGEDGDVTVWSST-----QHPTEVQHLVAHVLGVPSNAVTVEV 237 (781)
T ss_pred eeeEeccCCCCCEEEEecC-----CCcHHHHHHHHHHhCCCcceEEEEE
Confidence 3444445689999999765 2457778899999999999999864
No 60
>PF04686 SsgA: Streptomyces sporulation and cell division protein, SsgA; InterPro: IPR006776 The precise function of SsgA is unknown. It is an acidic, cytosolic protein which has been found to be essential for spore formation, and to stimulate cell division in Streptomyces coelicolor [].; PDB: 3CM1_C.
Probab=32.40 E-value=28 Score=26.94 Aligned_cols=52 Identities=12% Similarity=-0.068 Sum_probs=34.3
Q ss_pred eeeeccCCccchhhhhhhccccCCceEEEcchHHHHhhcCCCCCeEEEEEEeeCC
Q psy14054 15 EVILDANNEKPVNDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPFYGKYKVGFSK 69 (311)
Q Consensus 15 ~~~~~~~~~~p~aa~~s~~~~~grPVkl~~tReE~~~~~~~R~~~~~~~~~g~d~ 69 (311)
++.||+++++.|....... .+.||.|++.|+ =+..+..+|.-...+++.-..
T Consensus 5 ~L~Yd~~DP~AV~~~f~~~--~~~~v~W~faRd-LL~~Gl~~paG~GDVrv~P~~ 56 (100)
T PF04686_consen 5 RLRYDPADPYAVRLAFHVG--GDEPVEWVFARD-LLADGLRAPAGEGDVRVWPCP 56 (100)
T ss_dssp EEEEETTSTTEEEEEEE-S--S---EEEEEEHH-HHHHHTTS-EEETTEEEEEEE
T ss_pred EEEEcCCCCEEEEEEecCC--CCCcEEEEEeHH-HHHhhCcCCCCCCCEEEEecC
Confidence 6889999888776665433 478999999985 344566677777777777653
No 61
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=31.94 E-value=49 Score=20.83 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=15.2
Q ss_pred HHHHHHHHcCCCHHHHHHh
Q psy14054 143 MGHHVAQFLKLDYADFARS 161 (311)
Q Consensus 143 ~mDelA~~lg~DP~e~R~~ 161 (311)
-+.++|+.|||++-.|+.|
T Consensus 20 n~~~aA~~Lgisr~tL~~k 38 (42)
T PF02954_consen 20 NVSKAARLLGISRRTLYRK 38 (42)
T ss_dssp -HHHHHHHHTS-HHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHH
Confidence 3578999999999999876
No 62
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=30.19 E-value=79 Score=23.84 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHh
Q psy14054 136 SLLIAETMGHHVAQFLKLDYADFARS 161 (311)
Q Consensus 136 ~~fa~E~~mDelA~~lg~DP~e~R~~ 161 (311)
+...+|..|+++++..|++|.+++..
T Consensus 53 tLm~Le~~~~~l~~~~gl~~~dLn~d 78 (88)
T PF05121_consen 53 TLMKLEEAMEELCERFGLTPEDLNLD 78 (88)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHhccc
Confidence 56789999999999999999998764
No 63
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=30.12 E-value=45 Score=23.72 Aligned_cols=20 Identities=10% Similarity=0.105 Sum_probs=15.9
Q ss_pred HHHHHHHHcCCCHHHHHHhh
Q psy14054 143 MGHHVAQFLKLDYADFARSN 162 (311)
Q Consensus 143 ~mDelA~~lg~DP~e~R~~N 162 (311)
-.+|||+.|||++-+++...
T Consensus 22 t~eEiA~~lgis~~~v~~~l 41 (78)
T PF04539_consen 22 TDEEIAEELGISVEEVRELL 41 (78)
T ss_dssp BHHHHHHHHTS-HHHHHHHH
T ss_pred CHHHHHHHHcccHHHHHHHH
Confidence 46899999999999998653
No 64
>COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]
Probab=29.89 E-value=54 Score=23.49 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccch
Q psy14054 261 TKMIQVAARGLNIPAELIFINETATDKVPNASPTAASV 298 (311)
Q Consensus 261 t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr 298 (311)
.-+..++++.||.+++.|.|...+-+ |.+++.+|.+
T Consensus 23 ~~vT~~~~~~lg~~~~~i~Viieev~--~~~w~~gG~~ 58 (69)
T COG1942 23 AEVTEVTVETLGKDPSAIHVIIEEVP--PENWGVGGES 58 (69)
T ss_pred HHHHHHHHHHhCCCcccEEEEEEecC--hhheeEccEE
Confidence 45678899999999999999876544 3445555443
No 65
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=29.63 E-value=1.1e+02 Score=22.02 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=17.9
Q ss_pred CCCCeEEEEEEeeCCCCcEEEEEEEEEeecCC
Q psy14054 55 QRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGC 86 (311)
Q Consensus 55 ~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga 86 (311)
.+......+++-+++||+|+ ++++...+|-
T Consensus 22 ~~~~~~~~V~i~i~~dG~v~--~~~i~~sSG~ 51 (85)
T PF13103_consen 22 DSGGLSVTVRITIDPDGRVI--SVRIVKSSGN 51 (85)
T ss_dssp --TT--EEEEEEE-TTSBEE--EEEEEE--S-
T ss_pred CCCCcEEEEEEEECCCCCEE--EEEEecCCCC
Confidence 46778999999999999998 5555555553
No 66
>PF14174 YycC: YycC-like protein
Probab=28.11 E-value=20 Score=23.89 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=13.9
Q ss_pred HHHHHHHHhCCCCCcE
Q psy14054 263 MIQVAARGLNIPAELI 278 (311)
Q Consensus 263 ~~Qi~Ae~Lgi~~~~V 278 (311)
-+|..|+.||+|+|++
T Consensus 10 TA~kLs~~L~vPlE~l 25 (53)
T PF14174_consen 10 TAVKLSKKLGVPLEQL 25 (53)
T ss_pred HHHHHHHHHCCcHHHH
Confidence 4788999999999875
No 67
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=27.75 E-value=1.1e+02 Score=19.96 Aligned_cols=42 Identities=12% Similarity=-0.001 Sum_probs=26.5
Q ss_pred HHHHHHHcCCCHHHHHHhhCCcCCCcccccceecCCCHHHHHHHHHHcCCh
Q psy14054 144 GHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKY 194 (311)
Q Consensus 144 mDelA~~lg~DP~e~R~~Nl~~~g~~~~~g~~~~~~~~~~~l~~~~e~~~w 194 (311)
|.++|+++|+.+--+-+- |..++.. +...++-+.+++++.+|
T Consensus 2 i~dIA~~agvS~~TVSr~-ln~~~~v--------s~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSRV-LNGPPRV--------SEETRERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHHHHH-HTTCSSS--------THHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHHHHH-HhCCCCC--------CHHHHHHHHHHHHHHCC
Confidence 678999999999999765 3222111 22445555556655565
No 68
>PF14813 NADH_B2: NADH dehydrogenase 1 beta subcomplex subunit 2
Probab=27.48 E-value=29 Score=25.08 Aligned_cols=10 Identities=30% Similarity=0.478 Sum_probs=6.2
Q ss_pred HHHhCCCCCc
Q psy14054 268 ARGLNIPAEL 277 (311)
Q Consensus 268 Ae~Lgi~~~~ 277 (311)
=|+||||+|+
T Consensus 60 DeELGIppdd 69 (71)
T PF14813_consen 60 DEELGIPPDD 69 (71)
T ss_pred hhhcCCCCCC
Confidence 3666666664
No 69
>PF04205 FMN_bind: FMN-binding domain; InterPro: IPR007329 This conserved region includes the FMN-binding site of the NqrC protein [] as well as the NosR and NirI regulatory proteins.; GO: 0010181 FMN binding, 0016020 membrane; PDB: 3LWX_A 2KZX_A 3DCZ_A 3O6U_D.
Probab=27.43 E-value=1.1e+02 Score=21.89 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=20.6
Q ss_pred EEEEEEeeCCCCcEEEEEEEEEeec
Q psy14054 60 YGKYKVGFSKSGKLQVCEVWLYNNA 84 (311)
Q Consensus 60 ~~~~~~g~d~dG~i~a~~~~~~~d~ 84 (311)
.+++.+.+++||+|+.+++.-..+.
T Consensus 5 ~i~v~v~i~~dg~I~~v~~~~~~et 29 (81)
T PF04205_consen 5 PITVTVTIDKDGKITDVKILEHNET 29 (81)
T ss_dssp EEEEEEEEETTTEEEEEEEEECCCC
T ss_pred eEEEEEEEeCCCEEEEEEEeeccCC
Confidence 5678888999999999998886553
No 70
>PF13333 rve_2: Integrase core domain
Probab=27.41 E-value=42 Score=22.25 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=10.2
Q ss_pred CCCHHHHHHhhC
Q psy14054 152 KLDYADFARSNL 163 (311)
Q Consensus 152 g~DP~e~R~~Nl 163 (311)
|+.|+|||.+.|
T Consensus 41 ~lsP~eyr~~~l 52 (52)
T PF13333_consen 41 GLSPVEYRNQYL 52 (52)
T ss_pred CcCHHHHHHhhC
Confidence 899999998754
No 71
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=27.06 E-value=1.3e+02 Score=18.04 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=17.0
Q ss_pred HHHHHHHcCCCHHHHHHhhC
Q psy14054 144 GHHVAQFLKLDYADFARSNL 163 (311)
Q Consensus 144 mDelA~~lg~DP~e~R~~Nl 163 (311)
+..+|++.|+++.++...|-
T Consensus 7 l~~IA~~~~~~~~~l~~~N~ 26 (44)
T TIGR02899 7 LWKIAKKYGVDFDELIQANP 26 (44)
T ss_pred HHHHHHHHCcCHHHHHHHhh
Confidence 45689999999999999883
No 72
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=26.78 E-value=68 Score=24.48 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=24.3
Q ss_pred ccCCCchHHHHHHHHHH-------HHHHHHcCCCHHHHHHhh
Q psy14054 128 FRAFGAPQSLLIAETMG-------HHVAQFLKLDYADFARSN 162 (311)
Q Consensus 128 ~RG~G~~q~~fa~E~~m-------DelA~~lg~DP~e~R~~N 162 (311)
.|.+....+.-.++.++ ++||..+|++|-++|+..
T Consensus 7 ~r~~yg~~~~~Il~~L~~~~~l~de~la~~~~l~~~~vRkiL 48 (105)
T PF02002_consen 7 VRAFYGEEAVRILDALLRKGELTDEDLAKKLGLKPKEVRKIL 48 (105)
T ss_dssp HHTTS-STTHHHHHHHHHH--B-HHHHHHTT-S-HHHHHHHH
T ss_pred HHHHcCchHHHHHHHHHHcCCcCHHHHHHHhCCCHHHHHHHH
Confidence 35556666666677666 899999999999999653
No 73
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=26.16 E-value=67 Score=20.29 Aligned_cols=17 Identities=6% Similarity=-0.004 Sum_probs=15.1
Q ss_pred HHHHHHHcCCCHHHHHH
Q psy14054 144 GHHVAQFLKLDYADFAR 160 (311)
Q Consensus 144 mDelA~~lg~DP~e~R~ 160 (311)
+.|+|+.+|++|-.+|.
T Consensus 3 ~~e~a~~~gv~~~tlr~ 19 (49)
T cd04761 3 IGELAKLTGVSPSTLRY 19 (49)
T ss_pred HHHHHHHHCcCHHHHHH
Confidence 67999999999998884
No 74
>PF06892 Phage_CP76: Phage regulatory protein CII (CP76); InterPro: IPR009679 This entry is represented by Bacteriophage 186, CII. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage regulatory protein CII (CP76) sequences which are thought to be DNA binding proteins which are involved in the establishment of lysogeny [].
Probab=26.10 E-value=59 Score=27.34 Aligned_cols=25 Identities=8% Similarity=0.029 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHh
Q psy14054 137 LLIAETMGHHVAQFLKLDYADFARS 161 (311)
Q Consensus 137 ~fa~E~~mDelA~~lg~DP~e~R~~ 161 (311)
.|+.+.-|.+||.++||.|--||-|
T Consensus 16 ~fa~~h~~~~lA~~lGm~~~~LrNK 40 (162)
T PF06892_consen 16 AFAKNHNMAALAERLGMNPQTLRNK 40 (162)
T ss_pred HHHHhcCHHHHHHHhCCCHHHHHHH
Confidence 5888888999999999999888877
No 75
>PRK10344 DNA-binding transcriptional regulator Nlp; Provisional
Probab=25.26 E-value=31 Score=26.13 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=15.8
Q ss_pred HHHHHHHHHhCCCCCcEEE
Q psy14054 262 KMIQVAARGLNIPAELIFI 280 (311)
Q Consensus 262 ~~~Qi~Ae~Lgi~~~~V~v 280 (311)
.--+|+|++||+.|+.|=.
T Consensus 48 KgEriIA~aLGv~P~eIWP 66 (92)
T PRK10344 48 KGEMIIAKALGTDPWVIWP 66 (92)
T ss_pred hHHHHHHHHHCcCHHHhCc
Confidence 3468999999999998854
No 76
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=23.39 E-value=1.2e+02 Score=22.31 Aligned_cols=35 Identities=20% Similarity=0.149 Sum_probs=28.7
Q ss_pred CCCcccccCCCchHHHHHHHHHHHHHHHHcCCCHHHHHHhh
Q psy14054 122 LSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSN 162 (311)
Q Consensus 122 ~~p~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~N 162 (311)
.+|.+++|| ..|..|.+.+++=+++. ||-.+|.+.
T Consensus 3 ~l~laPvrg-----v~wv~e~I~~~Ae~E~~-Dp~~i~~~L 37 (79)
T PF05120_consen 3 DLPLAPVRG-----VVWVAEQIQEQAERELY-DPAAIRREL 37 (79)
T ss_pred ccccchHHH-----HHHHHHHHHHHHHHHHc-CHHHHHHHH
Confidence 368899998 78999998888866665 999999875
No 77
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=22.97 E-value=2.3e+02 Score=25.61 Aligned_cols=99 Identities=9% Similarity=0.050 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCcceeeeEeeeEeeec-cccccccCccceEEEEeeCCeEEEE----------
Q psy14054 181 LGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFGV-AFETLFLNQAGALVLIYVDGSVLIS---------- 249 (311)
Q Consensus 181 ~~~~l~~~~e~~~w~~~~~~~~~~~~~~~~~~rGig~a~~~~g~-~~~~~~~~~~~a~v~l~~dG~v~v~---------- 249 (311)
...++-++.+..+|++...=-......-....-|....|..-+. .|. .....+.|-+..++++.+.
T Consensus 82 ~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~C~~c~~~~yp---~~~paViv~V~~~~~iLL~rr~~~~~g~w 158 (256)
T PRK00241 82 LFQLLGRAVQLAEFYRSHRFCGYCGHPMHPSKTEWAMLCPHCRERYYP---RIAPCIIVAVRRGDEILLARHPRHRNGVY 158 (256)
T ss_pred HHHHHHHHHHHHHHhhcCccccccCCCCeecCCceeEECCCCCCEECC---CCCCEEEEEEEeCCEEEEEEccCCCCCcE
Confidence 34567788888889765321100000000111244444422221 111 1112244445555655553
Q ss_pred ---eCCCCCCCChHHHHHHHHHHHhCCCCCcEEEec
Q psy14054 250 ---HCGTEMGQGIHTKMIQVAARGLNIPAELIFINE 282 (311)
Q Consensus 250 ---~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~ 282 (311)
.|.+|.|...+.+...-+.|++|+....++...
T Consensus 159 slPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~ 194 (256)
T PRK00241 159 TVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVG 194 (256)
T ss_pred eCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEE
Confidence 367888988899999999999999988887764
No 78
>PRK00111 hypothetical protein; Provisional
Probab=22.77 E-value=2.6e+02 Score=24.07 Aligned_cols=88 Identities=14% Similarity=0.119 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHcCChHHHHHHHHHHhhccCcce-eeeEeeeEeeeccccccccCccceEEEEeeCCeEEEEeCCCCCCC
Q psy14054 179 CTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRK-RGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQ 257 (311)
Q Consensus 179 ~~~~~~l~~~~e~~~w~~~~~~~~~~~~~~~~~~-rGig~a~~~~g~~~~~~~~~~~~a~v~l~~dG~v~v~~g~~d~Gq 257 (311)
-.+.++|+.+....+|........... .|.. .|=.+|. .+--+.| .||.+.|.+...--=|
T Consensus 67 qsLg~iL~~l~~~~Gw~~~l~~~~V~~---~W~eIVG~~IA~--------------hT~p~~i-kdgvL~V~~sSsAWAt 128 (180)
T PRK00111 67 ESLGSVLNKEIQRRGWGKDIAGGWVTS---HWDELVGAKIAQ--------------HTKVEMI-KDKKLFITCDSTAWAT 128 (180)
T ss_pred ccHHHHHHHHHHhcCchhhhhHHHHHH---HhHHHHCHHHHh--------------hcCceEE-ECCEEEEEeCCHHHHH
Confidence 468899999999999987665433221 1321 2322221 1222333 5999999975522222
Q ss_pred ChH---HHHHHHHHHHhC-CCCCcEEEecCC
Q psy14054 258 GIH---TKMIQVAARGLN-IPAELIFINETA 284 (311)
Q Consensus 258 G~~---t~~~Qi~Ae~Lg-i~~~~V~v~~~d 284 (311)
-+. ..+.+.+.+.|| -...+|+|..+.
T Consensus 129 EL~~~r~~Il~rLNe~LG~~vV~dIri~GP~ 159 (180)
T PRK00111 129 NLRMMQRQILQVIAEKVGPDIITELRIFGPQ 159 (180)
T ss_pred HHHhHHHHHHHHHHHHcCcCceeEEEEECCC
Confidence 222 344566788998 678999996543
No 79
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=22.70 E-value=92 Score=19.77 Aligned_cols=18 Identities=22% Similarity=0.139 Sum_probs=14.2
Q ss_pred HHHHHHHcCCCHHHHHHh
Q psy14054 144 GHHVAQFLKLDYADFARS 161 (311)
Q Consensus 144 mDelA~~lg~DP~e~R~~ 161 (311)
..++|+++|+++-+++.+
T Consensus 20 ~~~la~~lglS~~~v~~R 37 (42)
T PF13404_consen 20 YAELAEELGLSESTVRRR 37 (42)
T ss_dssp HHHHHHHHTS-HHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHH
Confidence 468999999999998765
No 80
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=22.70 E-value=76 Score=22.24 Aligned_cols=17 Identities=6% Similarity=-0.050 Sum_probs=12.6
Q ss_pred HHHHHHHcCCCHHHHHH
Q psy14054 144 GHHVAQFLKLDYADFAR 160 (311)
Q Consensus 144 mDelA~~lg~DP~e~R~ 160 (311)
+++||++++++|-.++-
T Consensus 17 ~~eLa~~~~~s~~~ve~ 33 (69)
T PF09012_consen 17 LAELAREFGISPEAVEA 33 (69)
T ss_dssp HHHHHHHTT--HHHHHH
T ss_pred HHHHHHHHCcCHHHHHH
Confidence 57999999999988763
No 81
>KOG1759|consensus
Probab=22.62 E-value=95 Score=24.62 Aligned_cols=27 Identities=7% Similarity=0.287 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhCCCCCcEEEecCCCCC
Q psy14054 261 TKMIQVAARGLNIPAELIFINETATDK 287 (311)
Q Consensus 261 t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~ 287 (311)
-.+.-+..++|+|++++|-+..-|.+.
T Consensus 78 a~l~~il~~~L~l~~~rv~I~f~dl~~ 104 (115)
T KOG1759|consen 78 AALTEILEKELSLDPDRVYIKFYDLNA 104 (115)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEecCCh
Confidence 467899999999999999999877764
No 82
>KOG0430|consensus
Probab=22.61 E-value=2e+02 Score=31.78 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=42.9
Q ss_pred CeEEEEeCCCCCCCChHHHHHHHHHHHhCCCCCcEEEecCCCCCCCCCCCcccchhhhhhHHHHHhc
Q psy14054 244 GSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA 310 (311)
Q Consensus 244 G~v~v~~g~~d~GqG~~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~~~p~~~~t~~Sr~~~~~g~Av~~A 310 (311)
+.+.|+++++-+ .-...++|..||||..+|+|.. ....-+.|-=.+|++.++..++..|
T Consensus 719 ~el~v~~STQ~~-----~~tQ~~VA~~Lgipa~~V~v~t---rRvGGGFGGK~trs~~VA~a~ALaA 777 (1257)
T KOG0430|consen 719 GELQVYSSTQWP-----DFTQSVVAHVLGLPANKVQVKT---RRLGGGFGGKETRSNPVAAAAALAA 777 (1257)
T ss_pred CeEEEEEcCcCc-----HHHHHHHHHHhCCCccceEEEE---EeeccccccccccccHHHHHHHHHH
Confidence 378888755322 2346789999999999999974 3344566667788888888877665
No 83
>smart00422 HTH_MERR helix_turn_helix, mercury resistance.
Probab=21.74 E-value=2.3e+02 Score=19.29 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=14.9
Q ss_pred HHHHHHHcCCCHHHHHH
Q psy14054 144 GHHVAQFLKLDYADFAR 160 (311)
Q Consensus 144 mDelA~~lg~DP~e~R~ 160 (311)
+.|+|+.+|++|-.+|.
T Consensus 3 ~~eva~~~gvs~~tlr~ 19 (70)
T smart00422 3 IGEVAKLAGVSVRTLRY 19 (70)
T ss_pred HHHHHHHHCcCHHHHHH
Confidence 57899999999998883
No 84
>PF00376 MerR: MerR family regulatory protein; InterPro: IPR000551 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these is the MerR subfamily. MerR, which is found in many bacterial species mediates the mercuric-dependent induction of the mercury resistance operon. In the absence of mercury merR represses transcription by binding tightly, as a dimer, to the 'mer' operator region; when mercury is present the dimeric complex binds a single ion and becomes a potent transcriptional activator, while remaining bound to the mer site. Members of the family include the mercuric resistance operon regulatory protein merR; Bacillus subtilis bltR and bmrR; Bacillus glnR; Streptomyces coelicolor hspR; Bradyrhizobium japonicum nolA; Escherichia coli superoxide response regulator soxR; and Streptomyces lividans transcriptional activator tipA [, , , , , ]. Other members include hypothetical proteins from E. coli, B. subtilis and Haemophilus influenzae. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3HH0_A 2DG6_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q07_A 1Q06_A 1Q05_B ....
Probab=21.05 E-value=1e+02 Score=19.13 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=14.2
Q ss_pred HHHHHHHcCCCHHHHHH
Q psy14054 144 GHHVAQFLKLDYADFAR 160 (311)
Q Consensus 144 mDelA~~lg~DP~e~R~ 160 (311)
|-|+|+.+|+.|-.+|.
T Consensus 2 i~e~A~~~gvs~~tlR~ 18 (38)
T PF00376_consen 2 IGEVAKLLGVSPRTLRY 18 (38)
T ss_dssp HHHHHHHHTS-HHHHHH
T ss_pred HHHHHHHHCCCHHHHHH
Confidence 56899999999999985
No 85
>PHA01083 hypothetical protein
Probab=20.90 E-value=1.4e+02 Score=24.83 Aligned_cols=22 Identities=9% Similarity=-0.058 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHh
Q psy14054 140 AETMGHHVAQFLKLDYADFARS 161 (311)
Q Consensus 140 ~E~~mDelA~~lg~DP~e~R~~ 161 (311)
-|-..-+||+.+|+||-++=+.
T Consensus 45 ~de~A~~LAe~aGiDp~eall~ 66 (149)
T PHA01083 45 SDEEAIFLAESAGIDPEIALLG 66 (149)
T ss_pred CHHHHHHHHHHhCCCHHHHHHH
Confidence 3556668899999999876554
No 86
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=20.89 E-value=74 Score=27.74 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=16.4
Q ss_pred HHHHHHcCCCHHHHHHhh
Q psy14054 145 HHVAQFLKLDYADFARSN 162 (311)
Q Consensus 145 DelA~~lg~DP~e~R~~N 162 (311)
+|||+++|+||...|+.-
T Consensus 36 ~els~~~~vdsatIRrDf 53 (211)
T COG2344 36 KELSEALGVDSATIRRDF 53 (211)
T ss_pred HHHHHHhCCCHHHHhhhh
Confidence 589999999999999873
No 87
>PF08921 DUF1904: Domain of unknown function (DUF1904); InterPro: IPR015017 This entry represents a family of hypothetical bacterial proteins. ; PDB: 1U9D_B.
Probab=20.80 E-value=78 Score=24.78 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=27.7
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHcCCCHHHHHHhh
Q psy14054 127 AFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSN 162 (311)
Q Consensus 127 a~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~N 162 (311)
-+||+-.-+..-.-+.++|+||+-++.+|..|=+-.
T Consensus 5 r~rGi~~e~v~~~S~~LideLa~i~~~p~e~ftlE~ 40 (108)
T PF08921_consen 5 RFRGIEEEQVQELSKELIDELAEICGCPRENFTLEW 40 (108)
T ss_dssp EEESS-HHHHHHHHHHHHHHHHHHHT--GGG-EEEE
T ss_pred EEecCCHHHHHHHhHHHHHHHHHHHCCCcceEEEEE
Confidence 478988889999999999999999999998876553
No 88
>cd02152 OAT Ornithine acetyltransferase (OAT) family; also referred to as ArgJ. OAT catalyzes the first and fifth steps in arginine biosynthesis, coupling acetylation of glutamate with deacetylation of N-acetylornithine, which allows recycling of the acetyl group in the arginine biosynthetic pathway. Members of this family may experience feedback inhibition by L-arginine. The active enzyme is a heterotetramer of two alpha and two beta chains, where the alpha and beta chains are the result of autocatalytic cleavage. OATs found in the clavulanic acid biosynthesis gene cluster catalyze the fifth step only, and may utilize acetyl acceptors other than glutamate.
Probab=20.74 E-value=1.6e+02 Score=28.56 Aligned_cols=37 Identities=22% Similarity=0.379 Sum_probs=27.2
Q ss_pred EEEEeCCCCCCCCh---H--HHHHHHHHHHhCCCCCcEEEec
Q psy14054 246 VLISHCGTEMGQGI---H--TKMIQVAARGLNIPAELIFINE 282 (311)
Q Consensus 246 v~v~~g~~d~GqG~---~--t~~~Qi~Ae~Lgi~~~~V~v~~ 282 (311)
|.|+.|-...++|. + -.+++.+|+.|||+++.|-+..
T Consensus 61 vvvNSGnANA~TG~~G~~da~~~~~~~A~~l~i~~~~VlvaS 102 (390)
T cd02152 61 VVVNSGNANACTGEQGLEDAREMAELVAELLGIPEEEVLVAS 102 (390)
T ss_pred EEEcCCccccccCHHHHHHHHHHHHHHHHHhCCCcccEEEeC
Confidence 34445666666554 3 4668999999999999998874
No 89
>PF04760 IF2_N: Translation initiation factor IF-2, N-terminal region; InterPro: IPR006847 This region is found in the N-terminal half of translation initiation factor IF-2. It is found in two copies in IF-2 alpha isoforms, and in only one copy in the N-terminally truncated beta and gamma isoforms []. Its function is unknown.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1ND9_A.
Probab=20.65 E-value=52 Score=21.86 Aligned_cols=19 Identities=11% Similarity=0.057 Sum_probs=16.0
Q ss_pred HHHHHHHcCCCHHHHHHhh
Q psy14054 144 GHHVAQFLKLDYADFARSN 162 (311)
Q Consensus 144 mDelA~~lg~DP~e~R~~N 162 (311)
+.+||.++|++|-++=...
T Consensus 6 V~elAk~l~v~~~~ii~~l 24 (54)
T PF04760_consen 6 VSELAKELGVPSKEIIKKL 24 (54)
T ss_dssp TTHHHHHHSSSHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 5689999999999986654
No 90
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=20.62 E-value=1.1e+02 Score=22.49 Aligned_cols=27 Identities=11% Similarity=0.036 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhCCCCCcEEEecCCCC
Q psy14054 260 HTKMIQVAARGLNIPAELIFINETATD 286 (311)
Q Consensus 260 ~t~~~Qi~Ae~Lgi~~~~V~v~~~dT~ 286 (311)
-..+.+++++.|..+++.+++.+-+-+
T Consensus 19 y~~L~~~ls~kL~l~~~~~~LSY~~~~ 45 (78)
T cd06411 19 VSSLRALLSQALPQQAQRGQLSYRAPG 45 (78)
T ss_pred HHHHHHHHHHHhcCChhhcEEEecCCC
Confidence 488999999999999999999876444
No 91
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=20.51 E-value=1.4e+02 Score=18.34 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=16.6
Q ss_pred HHHHHHHcCCCHHHHHHhh
Q psy14054 144 GHHVAQFLKLDYADFARSN 162 (311)
Q Consensus 144 mDelA~~lg~DP~e~R~~N 162 (311)
+..||.+.|+++-+++.-|
T Consensus 9 l~~IA~~~~~~~~~l~~~N 27 (44)
T PF01476_consen 9 LWSIAKRYGISVDELMELN 27 (44)
T ss_dssp HHHHHHHTTS-HHHHHHHC
T ss_pred HHHHHhhhhhhHhHHHHhc
Confidence 5679999999999999999
No 92
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=20.34 E-value=1e+02 Score=18.92 Aligned_cols=17 Identities=18% Similarity=0.303 Sum_probs=15.0
Q ss_pred HHHHHHHcCCCHHHHHH
Q psy14054 144 GHHVAQFLKLDYADFAR 160 (311)
Q Consensus 144 mDelA~~lg~DP~e~R~ 160 (311)
+.|+|+.+|+++-.++.
T Consensus 3 ~~e~a~~lgvs~~tl~~ 19 (49)
T cd04762 3 TKEAAELLGVSPSTLRR 19 (49)
T ss_pred HHHHHHHHCcCHHHHHH
Confidence 57999999999988875
Done!