RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14054
(311 letters)
>gnl|CDD|215491 PLN02906, PLN02906, xanthine dehydrogenase.
Length = 1319
Score = 366 bits (941), Expect = e-117
Identities = 140/267 (52%), Positives = 187/267 (70%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
LDRD D+++TGQR+ F GKYKVGF+ GK+ ++ +YNN G S DLS AV+ RA+FH
Sbjct: 823 LDRDVDMMITGQRHAFLGKYKVGFTNEGKILALDLEIYNNGGNSLDLSGAVLERAMFHSD 882
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
N + +P+VR+ VC TN SNTAFR FG PQ +LI E +A L + N
Sbjct: 883 NVYEIPNVRIVGNVCFTNFPSNTAFRGFGGPQGMLITENWIQRIAVELNKSPEEIREMNF 942
Query: 164 FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
G++THY QVL+HCTL + ++++ S + +RR++ +EFN NR +KRGVA+VP FG
Sbjct: 943 QGEGSVTHYGQVLQHCTLPQLWDELKVSCDFLKRREEVDEFNAKNRWKKRGVAMVPTKFG 1002
Query: 224 VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINET 283
++F T F+NQAGALV +Y DG+VL++H G EMGQG+HTK+ QVAA NIP +FI+ET
Sbjct: 1003 ISFTTKFMNQAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFISET 1062
Query: 284 ATDKVPNASPTAASVGSDLNGMAILWA 310
+TDKVPNASPTAAS SD+ G A+L A
Sbjct: 1063 STDKVPNASPTAASASSDMYGAAVLDA 1089
>gnl|CDD|200222 TIGR02965, xanthine_xdhB, xanthine dehydrogenase, molybdopterin
binding subunit. Members of the protein family are the
molybdopterin-containing large subunit (or, in,
eukaryotes, the molybdopterin-binding domain) of
xanthine dehydrogenase, and enzyme that reduces the
purine pool by catabolizing xanthine to urate. This
model is based primarily on bacterial sequences; it does
not manage to include all eukaryotic xanthine
dehydrogenases and thereby discriminate them from the
closely related enzyme aldehyde dehydrogenase [Purines,
pyrimidines, nucleosides, and nucleotides, Other].
Length = 758
Score = 314 bits (806), Expect = e-101
Identities = 110/265 (41%), Positives = 158/265 (59%), Gaps = 2/265 (0%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
DRD+D+++TG+R+ F Y VGF G++ ++ + G S DLS V RA+FH
Sbjct: 256 PDRDDDMMITGKRHDFRVDYDVGFDDEGRILGVDIDMAARCGFSADLSGPVTDRALFHAD 315
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
N++++P V + + KTN SNTAFR FG PQ ++ E + VA+ L D + + N
Sbjct: 316 NAYFLPDVTITSHPLKTNTQSNTAFRGFGGPQGMVAIERIMDEVARALGKDPLEVRKRNF 375
Query: 164 FVTG--NLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVL 221
+ N+T Y+Q +E + E++ S Y RR FN + + K+G+A+ PV
Sbjct: 376 YGKDERNVTPYHQTVEDNIIHEIIEELEASSDYAARRAAIRAFNATSPVLKKGIALTPVK 435
Query: 222 FGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFIN 281
FG++F LNQAGALV +Y DGS+ ++H GTEMGQG++TK+ QV A + + + I
Sbjct: 436 FGISFTVTHLNQAGALVHVYTDGSIHLNHGGTEMGQGLNTKVAQVVAEEFQVDIDRVKIT 495
Query: 282 ETATDKVPNASPTAASVGSDLNGMA 306
T T KVPN S TAAS GSDLNGMA
Sbjct: 496 ATDTGKVPNTSATAASSGSDLNGMA 520
>gnl|CDD|226978 COG4631, XdhB, Xanthine dehydrogenase, molybdopterin-binding
subunit B [Nucleotide transport and metabolism].
Length = 781
Score = 311 bits (799), Expect = e-100
Identities = 116/269 (43%), Positives = 159/269 (59%), Gaps = 2/269 (0%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
DRDED+ TG+R+ F+ Y+VGF G++ + L G S DLS V RA+FH
Sbjct: 273 PDRDEDMTATGKRHDFHVDYEVGFDDEGRILGVDATLAARCGFSADLSGPVTDRALFHAD 332
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
N+++ PHV + + KTN SNTAFR FG PQ +L E + VA L D + + N
Sbjct: 333 NAYFYPHVHILSRPLKTNTVSNTAFRGFGGPQGMLGIERIIDEVAYALGKDPLEIRKLNF 392
Query: 164 FVTG--NLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVL 221
+ N+T Y+Q +E + R +++ S Y RR+ FN + + KRG+A+ PV
Sbjct: 393 YGKDGRNVTPYHQTVEDNIIARIVDELEASSDYAARREAIRAFNAASPVIKRGLALTPVK 452
Query: 222 FGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFIN 281
FG++F NQAGALV +Y DGS+ ++H GTEMGQG++TK+ QV A + + + I
Sbjct: 453 FGISFTATHYNQAGALVHVYTDGSIHLNHGGTEMGQGLYTKVAQVVAEEFQVDIDRVKIT 512
Query: 282 ETATDKVPNASPTAASVGSDLNGMAILWA 310
T TDKVPN S TAAS GSDLNGMA A
Sbjct: 513 ATTTDKVPNTSATAASSGSDLNGMAAQDA 541
>gnl|CDD|217210 pfam02738, Ald_Xan_dh_C2, Molybdopterin-binding domain of aldehyde
dehydrogenase.
Length = 543
Score = 299 bits (769), Expect = 2e-98
Identities = 108/268 (40%), Positives = 153/268 (57%)
Query: 43 YLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHC 102
LDR ED++ TG R+PF YKVG K GK+ +V + + G DLS V+ RA H
Sbjct: 127 MLDRQEDMIATGGRHPFKITYKVGAKKDGKITALDVDILADGGAYADLSDPVVERAGLHA 186
Query: 103 TNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSN 162
+ +P++R+ TNL N AFR FG PQ + E + +A+ L +D + R N
Sbjct: 187 LGPYKIPNIRIEGTAVYTNLPPNGAFRGFGGPQGMFALERLIDELARELGIDPLEIRRKN 246
Query: 163 LFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLF 222
L+ G+ T + Q L+ L C ++ +S +++ RR E+FN N RKRG+ + P +
Sbjct: 247 LYKEGDTTPFGQRLDSGNLPECLDECRKSSEFRARRAAVEKFNIGNSWRKRGIGLGPTKY 306
Query: 223 GVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINE 282
G F FL+QAGA V +Y DGSV +S G E+GQG+ TK+ Q+AA L IP + I +
Sbjct: 307 GSGFGAPFLDQAGARVRLYSDGSVTVSTGGIEIGQGLETKVAQIAAEELGIPLDDIRVIS 366
Query: 283 TATDKVPNASPTAASVGSDLNGMAILWA 310
TDKVPN S T S G+D+NG A+ A
Sbjct: 367 GDTDKVPNGSGTYGSRGTDVNGNAVRLA 394
>gnl|CDD|132014 TIGR02969, mam_aldehyde_ox, aldehyde oxidase. Members of this family
are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes,
closely related to xanthine dehydrogenase/oxidase.
Length = 1330
Score = 224 bits (572), Expect = 3e-66
Identities = 107/264 (40%), Positives = 158/264 (59%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
L+R ED+++TG R+P+ GKYK GF G++ +V Y+N G S D S V+ +
Sbjct: 828 LERGEDMLITGGRHPYLGKYKAGFMNDGRIVALDVEHYSNGGSSLDESLWVIEMGLLKMD 887
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
N++ P++R + C+TNL SNTAFR FG PQ+ LI E VA L N+
Sbjct: 888 NAYKFPNLRCRGWACRTNLPSNTAFRGFGFPQAGLITEACITEVAAKCGLSPEKVRTINM 947
Query: 164 FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
+ + T Y Q + L +C+ + Y ER+ E+FN N +KRG+A++P+ F
Sbjct: 948 YKEIDQTPYKQEINAKNLFQCWRECMAKSSYSERKVAVEKFNAENYWKKRGLAVIPLKFP 1007
Query: 224 VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINET 283
V ++ + QA ALV IY+DGSVL++H G EMGQG+HTKMIQV +R L +P + + T
Sbjct: 1008 VGLGSVAMGQAAALVHIYLDGSVLVTHGGIEMGQGVHTKMIQVVSRELKMPMSNVHLRGT 1067
Query: 284 ATDKVPNASPTAASVGSDLNGMAI 307
+T+ VPN + + SV +DLNG+A+
Sbjct: 1068 STETVPNTNASGGSVVADLNGLAV 1091
>gnl|CDD|215096 PLN00192, PLN00192, aldehyde oxidase.
Length = 1344
Score = 142 bits (359), Expect = 9e-38
Identities = 82/235 (34%), Positives = 120/235 (51%), Gaps = 10/235 (4%)
Query: 42 TYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFH 101
YL+R D++M G R+P Y VGF GK+ + + NAG S D+S +M R I
Sbjct: 841 MYLNRKTDMIMAGGRHPMKITYSVGFKSDGKITALHLDILINAGISPDIS-PIMPRNIIG 899
Query: 102 CTNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARS 161
+ + + VCKTNLSS +A RA G Q IAE + HVA L +D +
Sbjct: 900 ALKKYDWGALSFDIKVCKTNLSSRSAMRAPGEVQGSYIAEAIIEHVASTLSMDVDSVRKI 959
Query: 162 NLFVTGNLT-HYNQVLEHC---TLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAI 217
NL +L Y TL ++++ S ++K+R + +EFNR N+ +KRG++
Sbjct: 960 NLHTYESLKLFYGDSAGEPSEYTLPSIWDKLASSSEFKQRTEMVKEFNRSNKWKKRGISR 1019
Query: 218 VPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLN 272
VP++ V L V I DGS+ + G E+GQG+ TK+ Q+AA GL
Sbjct: 1020 VPIVHEV-----MLRPTPGKVSILSDGSIAVEVGGIEIGQGLWTKVKQMAAFGLG 1069
>gnl|CDD|236637 PRK09970, PRK09970, xanthine dehydrogenase subunit XdhA;
Provisional.
Length = 759
Score = 97.5 bits (243), Expect = 1e-22
Identities = 74/269 (27%), Positives = 117/269 (43%), Gaps = 11/269 (4%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAG--CSYDLSTAVMRRAIFH 101
L R+E + T R+ F K+G ++ G L+ + + +N G S+ S A
Sbjct: 273 LSREECFLATRTRHAFTIDIKMGVNRDGTLKGYSLDVLSNTGAYASHGHSIASAGGNKVA 332
Query: 102 CTNSFY-VPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFAR 160
Y + ++ TNL S A R +GAPQ + E+M A L +D +F
Sbjct: 333 ---YLYPRCAYKYSSKTVYTNLPSAGAMRGYGAPQVVFAVESMLDDAATALGIDPVEFRL 389
Query: 161 SNLFVTGNLTHYNQ-VLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVP 219
N G+ + + L C E+ + ++ +RR +C+ N+ LR RGV +
Sbjct: 390 RNAAREGDANPLSGKRIYSAGLPECLEKGRKIFEWDKRRAECK--NQQGNLR-RGVGVAC 446
Query: 220 VLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIF 279
+ + L AGA +L+ DG+V + TE+GQG T Q+ A + IP +
Sbjct: 447 FSYTSGTWPVGLEIAGARLLMNQDGTVQVQSGATEIGQGSDTVFSQMVAETVGIPVSDVR 506
Query: 280 -INETATDKVPNASPTAASVGSDLNGMAI 307
I+ TD P AS S + G AI
Sbjct: 507 VISTQDTDVTPFDPGAYASRQSYVAGPAI 535
>gnl|CDD|224446 COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large
subunit CoxL/CutL homologs [Energy production and
conversion].
Length = 731
Score = 94.7 bits (236), Expect = 2e-21
Identities = 58/266 (21%), Positives = 99/266 (37%), Gaps = 11/266 (4%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
R+E V TG R K+G K G+L + + + G V A
Sbjct: 263 ETREELFVATGHRRATLIDVKLGADKDGRLLAIKGTVAADTG--AYNGPTVPAAAAGLAR 320
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
+ + V + ++ TN+ N A+R G P+ E +A+ L +D + NL
Sbjct: 321 GPYKIEAVYIEPYLVHTNMPPNGAYRGAGRPEGTFALERAVDELAEELGIDPVEIRLRNL 380
Query: 164 FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
G + ++ + + ER + + R G A+
Sbjct: 381 IRGGPFGLGRRYDSGD-YLEELDEAAKRFGWSERPVKPIWTREGDLRRGVGRAM------ 433
Query: 224 VAFETLFLNQ-AGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINE 282
E GA V + DG+V + T++GQG T + Q+AA L IP + + +
Sbjct: 434 -YTEPSGAGPGEGARVRLEADGTVTVRTGATDIGQGTDTVLAQIAAEELGIPPDDVEVVH 492
Query: 283 TATDKVPNASPTAASVGSDLNGMAIL 308
TD + S G+ + G A++
Sbjct: 493 GDTDVPVGGWGSVGSRGTAVAGSAVI 518
>gnl|CDD|132240 TIGR03196, pucD, xanthine dehydrogenase D subunit. This gene has
been characterized in B. subtilis as the molybdopterin
binding-subunit of xanthine dehydrogenase (pucD), acting
in conjunction with pucC, the FAD-binding subunit and
pucE, the FeS-binding subunit. The more common XDH
complex (GenProp0640) includes the xdhB gene which is
related to pucD. It appears that most of the relatives
of pucD outside of this narrow clade are involved in
other processes as they are found in unrelated genomic
contexts, contain the more common XDH complex and/or do
not appear to process purines to allantoin.
Length = 768
Score = 72.0 bits (176), Expect = 5e-14
Identities = 68/280 (24%), Positives = 97/280 (34%), Gaps = 18/280 (6%)
Query: 45 DRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCTN 104
DR E + R+P +K G G L + + + G L AV+ A+ H
Sbjct: 263 DRKESFLGGIHRHPAKITFKHGADADGNLLAHDAKIVADGGAYASLGPAVLAFAVEHAAG 322
Query: 105 SFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLF 164
+ +P+ + TN AFR FG Q E +A L +D D R N
Sbjct: 323 PYRIPNAHLEGISVFTNNGPAGAFRGFGGNQITFAHEAHLDRLADALGIDPLDLRRKNAR 382
Query: 165 VTGNLTHYNQVLEHCTLG--RCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVP--- 219
G+L + G E + K + R A
Sbjct: 383 KPGDLGPLEHRIA-APDGAAEVIEAIASRPLPKAPILKKANRAVTALPGGRPAAAECGRL 441
Query: 220 ---VLFGVAFETLFLNQ-------AGALVLIYVDGSVLIS-HCG-TEMGQGIHTKMIQVA 267
+A + AGA + + DG+V I H E GQG Q+A
Sbjct: 442 QRGTGAAIAMHGGGFGEGMDDAAVAGARLELAEDGTVKIRAHFACAECGQGFLAAAEQIA 501
Query: 268 ARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAI 307
L AE I I T K P A ++AS G+ ++G AI
Sbjct: 502 MEELGCAAEDISIAIADTAKGPKAGSSSASRGTSMSGGAI 541
>gnl|CDD|132238 TIGR03194, 4hydrxCoA_A, 4-hydroxybenzoyl-CoA reductase, alpha
subunit. This model represents the largest chain,
alpha, of the enzyme 4-hydroxybenzoyl-CoA reductase. In
species capable of degrading various aromatic compounds
by way of benzoyl-CoA, this enzyme can convert
4-hydroxybenzoyl-CoA to benzoyl-CoA.
Length = 746
Score = 69.5 bits (170), Expect = 4e-13
Identities = 62/255 (24%), Positives = 100/255 (39%), Gaps = 18/255 (7%)
Query: 42 TYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVC--EVWLYNNAGCSYDLSTAVMRRAI 99
R+E + R Y K K+G K GK+ C EV A Y + T + A+
Sbjct: 257 LLQTREETFITHRGRPQTYVKMKIGLKKDGKITACAAEVVQRGGAYAGYGIVTILYAGAL 316
Query: 100 FHCTNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFA 159
H + +P V+ + + TN A R G + E++ +A L +D
Sbjct: 317 LHGL--YDIPAVKYDGYRVYTNTPPCGAMRGHGTVDTRAAFESLLDEMAAELGIDPFAIR 374
Query: 160 RSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKR---GVA 216
R NL +T + + L C E+V ++ ++ER+ RL K G+A
Sbjct: 375 RRNLLQAPTVTMNDLRVMSYGLPECLEKVEQASGWEERKG---------RLPKGRGLGIA 425
Query: 217 IVPVLFGVAFETLFLNQAGALVLIYV--DGSVLISHCGTEMGQGIHTKMIQVAARGLNIP 274
+ G A F + A V + + DG + + ++GQG T QVAA L +
Sbjct: 426 CSHFVSGSAKPIHFTGEPHATVALKLDFDGGITLLTGAADIGQGSSTIASQVAAEVLGVR 485
Query: 275 AELIFINETATDKVP 289
I + + P
Sbjct: 486 LSRIRVISADSALTP 500
>gnl|CDD|132354 TIGR03311, Se_dep_Molyb_1, selenium-dependent molybdenum
hydroxylase 1. Members of this protein family show full
length homology to the molybdenum-containing aldehyde
oxido-reductase of Desulfovibrio gigas. Members,
however, are found only within species that have, and
near those genes that encode, a set of predicted
accessory proteins for selenium-dependent molybdenum
hydroxylases. The best known examples of such enzymes
are forms of xanthine dehydrogenase and purine
hydroxylase; this family appears to be another such
enzyme.
Length = 848
Score = 65.6 bits (160), Expect = 8e-12
Identities = 62/264 (23%), Positives = 97/264 (36%), Gaps = 19/264 (7%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
L R E I++ +R+ + G ++G L + + + G L V++RA H
Sbjct: 421 LTRKESILVHPKRHAMEMTFTTGCDEAGNLTAMKADIIADTGAYASLGGPVLQRACTHAA 480
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
+ P+V + TN AFR FG QS E + +A+ + L + N
Sbjct: 481 GPYKYPNVDIRGTAVYTNNPPAGAFRGFGVTQSNFAMECNLNLLAEKVGLSPWEIRFKNA 540
Query: 164 FVTGNLTHYNQVL-EHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLF 222
G+ QV+ E + V KE ++ + GV
Sbjct: 541 VEPGDTLPNGQVVSEGTAIKETLLAV------KEVYEKSPCAGIACAFKNSGV------- 587
Query: 223 GVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINE 282
GV + G L DG V I +GQG+ T + Q+ +P E+I
Sbjct: 588 GVG-----IPDTGRCNLAVEDGKVHIRTSAACIGQGLGTVLTQIVCETTGLPPEVIVCEL 642
Query: 283 TATDKVPNASPTAASVGSDLNGMA 306
T P++ T AS S G A
Sbjct: 643 PDTALTPDSGTTTASRQSLFTGEA 666
>gnl|CDD|182084 PRK09800, PRK09800, putative hypoxanthine oxidase; Provisional.
Length = 956
Score = 49.4 bits (118), Expect = 1e-06
Identities = 61/294 (20%), Positives = 119/294 (40%), Gaps = 55/294 (18%)
Query: 46 RDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRA------I 99
R+E+ + R+ K+G K G+L ++ N G + S V +
Sbjct: 474 REEEFIANTSRHVAKVTVKLGAKKDGRLTAVKMDFRANTGPYGNHSLTVPCNGPALSLPL 533
Query: 100 FHCTNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQ-----SLLIAETMGHHVAQFLKLD 154
+ C N + +V + +N+ N A++ +GAP+ ++ +AE +A+ L++D
Sbjct: 534 YPCDNVDF----QVTTYY--SNICPNGAYQGYGAPKGNFAITMALAE-----LAEQLQID 582
Query: 155 YADFARSNLFVTGNLTHYNQVLE------------------HCTLGRCFEQVHESGKYKE 196
+ + N H Q L+ C L Q E ++
Sbjct: 583 QLEI------IERNRVHEGQELKILGAIGEGKAPTSVPSAASCALEEILRQGREMIQWSS 636
Query: 197 RRKQCEEFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMG 256
+ Q +++ RGVAI+ G+ ++QA ++ + DG+ ++ G ++G
Sbjct: 637 PKPQNGDWHI-----GRGVAIIMQKSGIPD----IDQANCMIKLESDGTFIVHSGGADIG 687
Query: 257 QGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA 310
G+ T + ++AA L+ P + + + TD AS G+ +G A A
Sbjct: 688 TGLDTVVTKLAAEVLHCPPQDVHVISGDTDHALFDKGAYASSGTCFSGNAARLA 741
>gnl|CDD|132356 TIGR03313, Se_sel_red_Mo, probable selenate reductase,
molybdenum-binding subunit. Our comparative genomics
suggests this protein family to be a subunit of a
selenium-dependent molybdenum hydroxylase, although the
substrate is not specified. This protein is suggested by
Bebien, et al., to be the molybdenum-binding subunit of
a molydbopterin-containing selenate reductase. Xi, et
al, however, show that mutation of this gene in E. coli
conferred sensitivity to adenine, suggesting a defect in
purine interconversion. This finding, plus homology of
nearby genes in a 23-gene purine catabolism region in E.
coli to xanthine dehydrogase subunits suggests xanthine
dehydrogenase activity.
Length = 951
Score = 47.7 bits (113), Expect = 5e-06
Identities = 58/276 (21%), Positives = 112/276 (40%), Gaps = 27/276 (9%)
Query: 46 RDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAV------MRRAI 99
R+E+ + R+ K+G K GKL ++ N G + S V + +
Sbjct: 470 REEEFICNTSRHVAKVTVKLGAKKDGKLTAIDMDFRANTGPYGNHSLTVPSNGPALSLPL 529
Query: 100 FHCTNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMG-HHVAQFLKLDYADF 158
+ C N + RV + +N+ A++ +GAP+ A TM +A+ L +D +
Sbjct: 530 YPCDNVDF----RVTTYY--SNICPTGAYQGYGAPKGNF-ALTMAMAELAEELGIDQLEM 582
Query: 159 ARSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRK------ 212
+N G + + + S +E +Q E + ++
Sbjct: 583 IETNRVHEGQELKILGAIGEGKMPTSVPKAA-SCALEEILRQGRELIEWDSPKQAKGDWK 641
Query: 213 --RGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARG 270
RGVAI+ G+ ++QA ++ + DG+ ++ G ++G G+ T + ++ A
Sbjct: 642 IGRGVAIIMQKSGIPD----IDQANCMIKLESDGTFIVHSGGADIGTGLDTVVSKLTAEV 697
Query: 271 LNIPAELIFINETATDKVPNASPTAASVGSDLNGMA 306
L+ P + + + TD AS G+ +G A
Sbjct: 698 LHCPMDDVHVISGDTDHALFDKGAYASSGTCFSGNA 733
>gnl|CDD|131469 TIGR02416, CO_dehy_Mo_lg, carbon-monoxide dehydrogenase, large
subunit. This model represents the large subunits of
group of carbon-monoxide dehydrogenases that include
molybdenum as part of the enzymatic cofactor. There are
various forms of carbon-monoxide dehydrogenase;
Salicibacter pomeroyi DSS-3, for example, has two forms.
Note that, at least in some species, the active site Cys
is modified with a selenium attached to (rather than
replacing) the sulfur atom. This is termed
selanylcysteine, and created post-translationally, in
contrast to selenocysteine incorporation during
translation as for many other selenoproteins [Energy
metabolism, Other].
Length = 770
Score = 45.7 bits (108), Expect = 2e-05
Identities = 64/291 (21%), Positives = 105/291 (36%), Gaps = 41/291 (14%)
Query: 45 DRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMR--RAIFH- 101
DR E++ T ++ ++ +K GK+ + + G ++D + F+
Sbjct: 272 DRMENLSTTSFARDYHMTGELAATKDGKILAMRCNVLADHG-AFDACADPSKWPAGFFNI 330
Query: 102 CTNSFYVP--HVRVNAFVCKTNLSSNTAFR-AFGAPQSLLIAETMGHHVAQFLKLDYADF 158
CT S+ +P H V+ V A+R +F +++ E +AQ L++D AD
Sbjct: 331 CTGSYDIPVAHCAVDG-VYTNKAPGGVAYRCSFRVTEAVYAIERAVDTLAQRLEMDSADL 389
Query: 159 ARSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLR-----KR 213
N + ++SG Y K+ + +++LR KR
Sbjct: 390 RIKNFIQPEQFPYTAP----------LGWEYDSGDYPLAMKKAMDTVDYHQLRAEQAAKR 439
Query: 214 GVAIVPVLFGVAFETLFLNQAGA-----------------LVLIYVDGSVLISHCGTEMG 256
L G+ F GA + I+ GS + G
Sbjct: 440 KRGETRELMGIGISF-FTEIVGAGPSKNCDILGVGMFDSCEIRIHPTGSAIARMGTKSQG 498
Query: 257 QGIHTKMIQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAI 307
QG T Q+ A L IPAE I + E TD P T S + + G A
Sbjct: 499 QGHETTYAQIIATELGIPAEDIMVEEGDTDTAPYGLGTYGSRSTPVAGAAT 549
>gnl|CDD|220423 pfam09819, ABC_cobalt, ABC-type cobalt transport system, permease
component. Members of this family of prokaryotic
proteins include various hypothetical proteins as well
as ABC-type cobalt transport systems.
Length = 129
Score = 28.7 bits (65), Expect = 2.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 210 LRKRGVAIVPVLFGVAFETLFLNQAGALVLIY 241
+RK G A++ L E L +Q G LI
Sbjct: 58 IRKPGAALLGELLAALVEMLLGSQWGVSTLIS 89
>gnl|CDD|225532 COG2985, COG2985, Predicted permease [General function prediction
only].
Length = 544
Score = 28.9 bits (65), Expect = 3.8
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 207 HNRLRKRGVAIVPVLFGVAFETLFLNQAGALV----LIYVDGSVLISHC-GTEMGQGIHT 261
++R G+ I VLFGV F LFL Q G + L + G +L + G E G G +
Sbjct: 23 FGKIRGFGLGIGGVLFGVLFVGLFLGQYGFTINTDMLHFELGLILFVYTIGLEAGPGFFS 82
Query: 262 KMIQVAARGLNIPAELIFI 280
+ LN A LI I
Sbjct: 83 SFRKSGLN-LNAFALLIVI 100
>gnl|CDD|237973 PRK15488, PRK15488, thiosulfate reductase PhsA; Provisional.
Length = 759
Score = 28.9 bits (65), Expect = 4.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 42 TYLDRDEDIVMTGQRNPFYG 61
TYL+RDE+I +NP Y
Sbjct: 482 TYLERDEEISDKSGKNPAYA 501
>gnl|CDD|129344 TIGR00241, CoA_E_activ, CoA-substrate-specific enzyme activase,
putative. This domain is found in a set of closely
related proteins including the
(R)-2-hydroxyglutaryl-CoA dehydratase activase of
Acidaminococcus fermentans, in longer proteins from M.
jannaschii and M. thermoautotrophicum that share an
additional N-terminal domain, in a protein described as
a subunit of the benzoyl-CoA reductase of
Rhodopseudomonas palustris, and in two repeats of an
uncharacterized protein of Aquifex aeolicus.This domain
may be involved in generating or regenerating the
active sites of enzymes related to
(R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA
reductase.
Length = 248
Score = 27.8 bits (62), Expect = 6.2
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 12/58 (20%)
Query: 25 PVNDDLSEDEEAVLNFVT----YLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEV 78
+ E A+L + L+ + IV TG YG++KVGF+ V E+
Sbjct: 29 DTTPVIEETARAILEALKEAGIGLEPIDKIVATG-----YGRHKVGFA---DKIVTEI 78
>gnl|CDD|221994 pfam13230, GATase_4, Glutamine amidotransferases class-II. This
family captures members that are not found in pfam00310.
Length = 272
Score = 27.6 bits (62), Expect = 7.1
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 208 NRLRKRGVAIVPVLFGVAFETLF-----LNQAGALVLIYVDGSVLISHCGTEM 255
++LR+ P L FE L + + G + +G L +HC T +
Sbjct: 139 DQLREAFPGRPPSL-DELFEALGELTREIAEHGVFNFLLSNGQALFAHCSTRL 190
>gnl|CDD|181942 PRK09547, nhaB, sodium/proton antiporter; Reviewed.
Length = 513
Score = 27.9 bits (63), Expect = 7.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 132 GAPQSLLIAETMGHHVAQFL 151
G PQ+L+IA+ G H +F
Sbjct: 223 GEPQNLIIAKQAGWHFGEFF 242
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.134 0.402
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,656,925
Number of extensions: 1479323
Number of successful extensions: 1157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1144
Number of HSP's successfully gapped: 26
Length of query: 311
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 214
Effective length of database: 6,635,264
Effective search space: 1419946496
Effective search space used: 1419946496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)