RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14054
(311 letters)
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine
oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE
I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C*
3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C*
3sr6_C*
Length = 755
Score = 373 bits (961), Expect = e-125
Identities = 135/268 (50%), Positives = 190/268 (70%)
Query: 43 YLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHC 102
LDR+ED+++TG R+PF +YKVGF K+G + EV Y+NAG S DLS ++M RA+FH
Sbjct: 256 MLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHM 315
Query: 103 TNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSN 162
N + +P++R +CKTNLSSNTAFR FG PQ+L IAE VA L + N
Sbjct: 316 DNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKN 375
Query: 163 LFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLF 222
++ G+LTH+NQ LE ++ RC+++ +S +Y R+ + ++FN+ N +KRG+ I+P F
Sbjct: 376 MYKEGDLTHFNQRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKF 435
Query: 223 GVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINE 282
G++F FLNQAGAL+ +Y DGSVL+SH GTEMGQG+HTKM+QVA++ L IP I+I+E
Sbjct: 436 GISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISE 495
Query: 283 TATDKVPNASPTAASVGSDLNGMAILWA 310
T+T+ VPN+SPTAASV +D+ G A+ A
Sbjct: 496 TSTNTVPNSSPTAASVSTDIYGQAVYEA 523
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur,
oxidoreductase, purine metabolism, molybdenum cofactor,
hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter
capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Length = 777
Score = 360 bits (925), Expect = e-119
Identities = 118/288 (40%), Positives = 157/288 (54%), Gaps = 20/288 (6%)
Query: 43 YLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHC 102
DRD+D+V+TG+R+ F +Y++G SGKL + G S DLS V RA+ H
Sbjct: 256 RYDRDDDMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRAMLHA 315
Query: 103 TNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSN 162
S++VP +R+ + +TN SNTAFR FG PQ L E H+A+ + D A+ N
Sbjct: 316 DGSYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGRDPAELRALN 375
Query: 163 L--------------------FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCE 202
THY Q + C LG ++ +S + RR +
Sbjct: 376 FYDPPERGGLSAPPSPPEPIATKKTQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIA 435
Query: 203 EFNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTK 262
+N NR RG+A+ PV FG++F LNQAGALV IY DGSV ++H GTEMGQG+H K
Sbjct: 436 AWNSTNRTLARGIALSPVKFGISFTLTHLNQAGALVQIYTDGSVALNHGGTEMGQGLHAK 495
Query: 263 MIQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA 310
M+QVAA L I + I T T KVPN S TAAS G+D+NGMA+ A
Sbjct: 496 MVQVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADMNGMAVKDA 543
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL;
1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A*
1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A*
2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B*
3b9j_A* 1fiq_A*
Length = 1332
Score = 352 bits (905), Expect = e-112
Identities = 135/268 (50%), Positives = 190/268 (70%)
Query: 43 YLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHC 102
LDR+ED+++TG R+PF +YKVGF K+G + EV Y+NAG S DLS ++M RA+FH
Sbjct: 826 MLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHM 885
Query: 103 TNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSN 162
N + +P++R +CKTNLSSNTAFR FG PQ+L IAE VA L + N
Sbjct: 886 DNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKN 945
Query: 163 LFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLF 222
++ G+LTH+NQ LE ++ RC+++ +S +Y R+ + ++FN+ N +KRG+ I+P F
Sbjct: 946 MYKEGDLTHFNQRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKF 1005
Query: 223 GVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINE 282
G++F FLNQAGAL+ +Y DGSVL+SH GTEMGQG+HTKM+QVA++ L IP I+I+E
Sbjct: 1006 GISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISE 1065
Query: 283 TATDKVPNASPTAASVGSDLNGMAILWA 310
T+T+ VPN+SPTAASV +D+ G A+ A
Sbjct: 1066 TSTNTVPNSSPTAASVSTDIYGQAVYEA 1093
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A
{Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1
d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Length = 907
Score = 301 bits (774), Expect = 6e-96
Identities = 57/270 (21%), Positives = 101/270 (37%), Gaps = 9/270 (3%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
+ + TG+R+P+ K K G L E + G + + R
Sbjct: 448 YNYQQQQQYTGKRSPWEMNVKFAAKKDGTLLAMESDWLVDHGPYSEFGDLLTLRGAQFIG 507
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
+ +P++R TN +AFR +GAPQS+ +E + +A+ L +D + N
Sbjct: 508 AGYNIPNIRGLGRTVATNHVWGSAFRGYGAPQSMFASECLMDMLAEKLGMDPLELRYKNA 567
Query: 164 FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
+ G+ Q E +L +Q+ + + K+GV I ++G
Sbjct: 568 YRPGDTNPTGQEPEVFSLPDMIDQLRPKYQAALEKA----QKESTATHKKGVGISIGVYG 623
Query: 224 VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGL---NIPAELIFI 280
+ ++A + DG++ + + GQG + A L + E I
Sbjct: 624 SGLDGPDASEAW--AELNADGTITVHTAWEDHGQGADIGCVGTAHEALRPMGVAPEKIKF 681
Query: 281 NETATDKVPNASPTAASVGSDLNGMAILWA 310
T PN+ P+ S + G AI A
Sbjct: 682 TWPNTATTPNSGPSGGSRQQVMTGNAIRVA 711
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta
barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans}
SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Length = 907
Score = 296 bits (759), Expect = 7e-94
Identities = 63/270 (23%), Positives = 112/270 (41%), Gaps = 9/270 (3%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
+ ++ TG+R+PF+ + + GK+ E + G + + R +
Sbjct: 450 YNYEQQQNYTGKRSPFWTTMRYAADRQGKILAMETDWSVDHGPYSEFGDLLTLRGAQYIG 509
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
+ + ++R TN AFR +GAP+S +E + +A+ L +D + N
Sbjct: 510 AGYGIANIRGTGRTVATNHCWGAAFRGYGAPESEFPSEVLMDELAEKLGMDPFELRALNC 569
Query: 164 FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
+ G+ T Q+ E +L F+++ + ++R R KRGV + ++G
Sbjct: 570 YREGDTTSSGQIPEVMSLPEMFDKMRPYYEESKKR----VKERSTAEIKRGVGVALGVYG 625
Query: 224 VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAA---RGLNIPAELIFI 280
+ + + A V + DGSV + + + GQG + A R L I E I +
Sbjct: 626 AGLD--GPDTSEAWVELNDDGSVTLGNSWEDHGQGADAGSLGTAHEALRPLGITPENIHL 683
Query: 281 NETATDKVPNASPTAASVGSDLNGMAILWA 310
T K PN+ P S + G AI A
Sbjct: 684 VMNDTSKTPNSGPAGGSRSQVVTGNAIRVA 713
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium
ligand, iron, iron-sulfur, metal-binding,
oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium
barkeri}
Length = 425
Score = 156 bits (396), Expect = 1e-44
Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 5/160 (3%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
R+E ++ +R+P K G +K G+LQ +V ++ + G AV+ RA HC
Sbjct: 266 RSREESTTVSSKRHPMTMHCKTGATKDGRLQAVQVEMFGDTGAYASYGPAVITRATVHCM 325
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
+ VP+VRV+A TN + AFR FG PQ+ + E + +A+ L +D D N
Sbjct: 326 GPYVVPNVRVDAKFVYTNNPMSGAFRGFGVPQASVCHEGQMNALAKALGMDPIDIRILNA 385
Query: 164 FVTGNLTHYNQVLEHC-----TLGRCFEQVHESGKYKERR 198
G QVLE+ TL + E+ E Y++ R
Sbjct: 386 HQVGAKLATGQVLENSVGLIETLEKAREKAVEVMGYEKTR 425
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase
family, dimer heterotrimers, oxidoreductase; HET: PCD
FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1
d.133.1.1 PDB: 1sb3_A*
Length = 769
Score = 141 bits (357), Expect = 1e-37
Identities = 48/268 (17%), Positives = 96/268 (35%), Gaps = 5/268 (1%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
R+E + R K K+G K GK+ + G +
Sbjct: 273 QTREETFIAHRGRPWTEVKMKIGLKKDGKIAALALEATQAGGAYAGYGIITILYTGALMH 332
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
+++P ++ +A+ TN A R G + E + + + L +D + N+
Sbjct: 333 GLYHIPAIKHDAWRVYTNTPPCGAMRGHGTVDTRAAFEALLTEMGEELGIDSLKIRQINM 392
Query: 164 FVTGN-LTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLF 222
+T Y Q + + C E+V + ++ER+ + + R ++
Sbjct: 393 LPQIPYVTMYAQRVMSYGVPECLEKVKAASGWEERKGKLPK----GRGLGIALSHFVSGT 448
Query: 223 GVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINE 282
A + + DG + + ++GQG +T QVAA L + I +
Sbjct: 449 STPKHWTGEPHATVNLKLDFDGGITLLTGAADIGQGSNTMASQVAAEVLGVRLSRIRVIS 508
Query: 283 TATDKVPNASPTAASVGSDLNGMAILWA 310
+ P + + +S + + G A + A
Sbjct: 509 ADSALTPKDNGSYSSRVTFMVGNASISA 536
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD;
HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1
d.133.1.1
Length = 788
Score = 131 bits (332), Expect = 2e-34
Identities = 56/279 (20%), Positives = 94/279 (33%), Gaps = 13/279 (4%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
DR E+ + + + F G+ E + G +L + +
Sbjct: 283 EDRQENFLGATHAKQQRNEMGLAFDGDGRFLALENRSITDGGAYNNLPWTQLVESHVGNA 342
Query: 104 NSF--Y-VPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFAR 160
Y VP V + TN A+R G + ET+ A+ L L + R
Sbjct: 343 VILGVYKVPAVSEESIAVATNKCPIGAYRGVGFTAGQIARETLIDRAARQLGLSPFEIRR 402
Query: 161 SNLFVTGNL---THYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAI 217
N+ + + Q T + + E + R++ E + GV++
Sbjct: 403 RNVVMPEDFPFTNRLGQTHREGTYLQTINLLEEMVNPEAFRQRQAEARARGKYLGLGVSV 462
Query: 218 VPVLFGVAFETL------FLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGL 271
+ G TL A V I G V ++ GQG T + Q+AA L
Sbjct: 463 FNEVTGTGTRTLSFLGTPTTTHDSATVRIDPTGKVTVTTSLASSGQGHETTLAQIAADVL 522
Query: 272 NIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA 310
+PA + I + + K AS G+ + +I A
Sbjct: 523 GVPASDVVI-QAGSTKNTYGFGAYASRGAVIGAGSIGRA 560
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium
ligand, iron, iron-sulfur, metal-binding,
oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium
barkeri}
Length = 330
Score = 117 bits (295), Expect = 8e-31
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 210 LRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAAR 269
++KRG + + +G+ T N A A V I+ DGS + ++GQG T M Q+AA
Sbjct: 1 MKKRGKGVGSMWYGIGN-TGLPNPAAAFVEIHGDGSANVMFGAADIGQGSGTAMAQIAAE 59
Query: 270 GLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA 310
L + E I + T P+ T+AS + + G A++ A
Sbjct: 60 ELGLDYEKIHVTWGDTMVTPDGGATSASRQTLITGNAVILA 100
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum,
molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A
{Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1
PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Length = 809
Score = 119 bits (301), Expect = 3e-30
Identities = 56/285 (19%), Positives = 97/285 (34%), Gaps = 18/285 (6%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAG--CSYDLSTAVMRRAIFH 101
DR E++ T ++ ++ +K GK+ + + G + + +
Sbjct: 299 EDRMENLSTTSFARDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNI 358
Query: 102 CTNSFYVPHVRVNAFVCKTNL-SSNTAFR-AFGAPQSLLIAETMGHHVAQFLKLDYADFA 159
CT S+ +P + TN S A+R +F +++ E +AQ L++D AD
Sbjct: 359 CTGSYDMPVAHLAVDGVYTNKASGGVAYRCSFRVTEAVYAIERAIETLAQRLEMDSADLR 418
Query: 160 RSNLFVTGNL---THYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRK---- 212
N + ++ ++ Y + R + + + +
Sbjct: 419 IKNFIQPEQFPYMAPLGWEYDSGNYPLAMKKAMDTVGYHQLRAEQKAKQEAFKRGETREI 478
Query: 213 RGVAI-------VPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQ 265
G+ I A + I+ GSV+ GQG T Q
Sbjct: 479 MGIGISFFTEIVGAGPSKNCDILGVSMFDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQ 538
Query: 266 VAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA 310
+ A L IPA+ I I E TD P T S + G A A
Sbjct: 539 IIATELGIPADDIMIEEGNTDTAPYGLGTYGSRSTPTAGAATAVA 583
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase;
HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava}
SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Length = 803
Score = 114 bits (288), Expect = 1e-28
Identities = 56/283 (19%), Positives = 98/283 (34%), Gaps = 17/283 (6%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAG--CSYDLSTAVMRRAIFH 101
DR E+I T ++ ++ + GK+ V + + G + +FH
Sbjct: 296 EDRVENISTTAFARDYHMDGELAATPDGKILGLRVNVVADHGAFDACA-DPTKFPAGLFH 354
Query: 102 CTNSFY-VPHVRVNAFVCKTNLSSNTAFR--AFGAPQSLLIAETMGHHVAQFLKLDYADF 158
+ Y +P + TN + +F +++ + E M +AQ L +D A+
Sbjct: 355 ICSGSYDIPRAHCSVKGVYTNKAPGGVAYXXSFRVTEAVYLIERMVDVLAQKLNMDKAEI 414
Query: 159 ARSNLFVTGNL---THYNQVLEHCTLGRCFEQVHESGKYKE-RRKQCEEFNRHNRLRKRG 214
N T + + ++V ++ Y R +Q N G
Sbjct: 415 RAKNFIRKEQFPYTTQFGFEYDSGDYHTALKKVLDAVDYPALRAEQAARRADPNSPTLMG 474
Query: 215 VAIVPVLFGVAFETLFL-------NQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVA 267
+ +V V + + I+ GS + GQG T Q+
Sbjct: 475 IGLVTFTEVVGAGPSKMCDILGVGMFDSCEIRIHPTGSAIARMGTITQGQGHQTTYAQII 534
Query: 268 ARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGMAILWA 310
A L IP+E+I + E T P T S + + G AI A
Sbjct: 535 ATELGIPSEVIQVEEGDTSTAPYGLGTYGSRSTPVAGAAIALA 577
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding
protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A
{Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A*
2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A*
1gcg_A 3ga5_A* 3gbp_A*
Length = 309
Score = 27.0 bits (60), Expect = 8.5
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 16/75 (21%)
Query: 227 ETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINETATD 286
+ L AL + VD + + +I+ A N+P ++F N+ +
Sbjct: 53 DVLLAKGVKALAINLVDPAAAGT-------------VIEKARGQ-NVP--VVFFNKEPSR 96
Query: 287 KVPNASPTAASVGSD 301
K ++ A VG+D
Sbjct: 97 KALDSYDKAYYVGTD 111
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 8.9
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 17/55 (30%)
Query: 89 DLSTAVMRRAIFHCTNSFYVP---HVRVNAFVCKTNLSSNTAFRAF---GAPQSL 137
+L+ ++ + TNS ++P V + + V N A + G PQSL
Sbjct: 343 NLTQEQVQDYVNK-TNS-HLPAGKQVEI-SLV-------NGA-KNLVVSGPPQSL 386
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.402
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,747,419
Number of extensions: 282399
Number of successful extensions: 510
Number of sequences better than 10.0: 1
Number of HSP's gapped: 492
Number of HSP's successfully gapped: 17
Length of query: 311
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 218
Effective length of database: 4,105,140
Effective search space: 894920520
Effective search space used: 894920520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.0 bits)