RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14054
(311 letters)
>d1jrob2 d.133.1.1 (B:124-777) Xanthine dehydrogenase chain B,
C-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}
Length = 654
Score = 132 bits (333), Expect = 2e-35
Identities = 116/282 (41%), Positives = 154/282 (54%), Gaps = 20/282 (7%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
DRD+D+V+TG+R+ F +Y++G SGKL + G S DLS V RA+ H
Sbjct: 134 YDRDDDMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRAMLHAD 193
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
S++VP +R+ + +TN SNTAFR FG PQ L E H+A+ + D A+ N
Sbjct: 194 GSYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGRDPAELRALNF 253
Query: 164 --------------------FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEE 203
THY Q + C LG ++ +S + RR +
Sbjct: 254 YDPPERGGLSAPPSPPEPIATKKTQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIAA 313
Query: 204 FNRHNRLRKRGVAIVPVLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKM 263
+N NR RG+A+ PV FG++F LNQAGALV IY DGSV ++H GTEMGQG+H KM
Sbjct: 314 WNSTNRTLARGIALSPVKFGISFTLTHLNQAGALVQIYTDGSVALNHGGTEMGQGLHAKM 373
Query: 264 IQVAARGLNIPAELIFINETATDKVPNASPTAASVGSDLNGM 305
+QVAA L I + I T T KVPN S TAAS G+D+NGM
Sbjct: 374 VQVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADMNGM 415
>d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal domain
{Cow (Bos taurus) [TaxId: 9913]}
Length = 638
Score = 118 bits (297), Expect = 2e-30
Identities = 135/268 (50%), Positives = 190/268 (70%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCT 103
LDR+ED+++TG R+PF +YKVGF K+G + EV Y+NAG S DLS ++M RA+FH
Sbjct: 133 LDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMD 192
Query: 104 NSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFARSNL 163
N + +P++R +CKTNLSSNTAFR FG PQ+L IAE VA L + N+
Sbjct: 193 NCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNM 252
Query: 164 FVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVPVLFG 223
+ G+LTH+NQ LE ++ RC+++ +S +Y R+ + ++FN+ N +KRG+ I+P FG
Sbjct: 253 YKEGDLTHFNQRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKFG 312
Query: 224 VAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIFINET 283
++F FLNQAGAL+ +Y DGSVL+SH GTEMGQG+HTKM+QVA++ L IP I+I+ET
Sbjct: 313 ISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISET 372
Query: 284 ATDKVPNASPTAASVGSDLNGMAILWAN 311
+T+ VPN+SPTAASV +D+ G A+ A
Sbjct: 373 STNTVPNSSPTAASVSTDIYGQAVYEAC 400
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large
subunit QorL {Pseudomonas putida [TaxId: 303]}
Length = 621
Score = 79.7 bits (195), Expect = 3e-17
Identities = 52/278 (18%), Positives = 91/278 (32%), Gaps = 12/278 (4%)
Query: 44 LDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAIFH-- 101
DR E+ + + + F G+ E + G +L + +
Sbjct: 118 EDRQENFLGATHAKQQRNEMGLAFDGDGRFLALENRSITDGGAYNNLPWTQLVESHVGNA 177
Query: 102 -CTNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFAR 160
+ VP V + TN A+R G + ET+ A+ L L + R
Sbjct: 178 VILGVYKVPAVSEESIAVATNKCPIGAYRGVGFTAGQIARETLIDRAARQLGLSPFEIRR 237
Query: 161 SNLFVTGNLTHYNQVLEHCTLG---RCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAI 217
N+ + + N++ + G + + E + R++ E + GV++
Sbjct: 238 RNVVMPEDFPFTNRLGQTHREGTYLQTINLLEEMVNPEAFRQRQAEARARGKYLGLGVSV 297
Query: 218 VPVLFGVAFETL------FLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGL 271
+ G TL A V I G V ++ GQG T + Q+AA L
Sbjct: 298 FNEVTGTGTRTLSFLGTPTTTHDSATVRIDPTGKVTVTTSLASSGQGHETTLAQIAADVL 357
Query: 272 NIPAELIFINETATDKVPNASPTAASVGSDLNGMAILW 309
+PA + I +T A+ G
Sbjct: 358 GVPASDVVIQAGSTKNTYGFGAYASRGAVIGAGSIGRA 395
>d1rm6a2 d.133.1.1 (A:134-769) 4-hydroxybenzoyl-CoA reductase alpha
subunit HrcA, C-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 636
Score = 72.4 bits (176), Expect = 8e-15
Identities = 42/269 (15%), Positives = 86/269 (31%), Gaps = 3/269 (1%)
Query: 40 FVTYLDRDEDIVMTGQRNPFYGKYKVGFSKSGKLQVCEVWLYNNAGCSYDLSTAVMRRAI 99
R+E + R K K+G K GK+ + G +
Sbjct: 136 VRLLQTREETFIAHRGRPWTEVKMKIGLKKDGKIAALALEATQAGGAYAGYGIITILYTG 195
Query: 100 FHCTNSFYVPHVRVNAFVCKTNLSSNTAFRAFGAPQSLLIAETMGHHVAQFLKLDYADFA 159
+++P ++ +A+ TN A R G + E + + + L +D
Sbjct: 196 ALMHGLYHIPAIKHDAWRVYTNTPPCGAMRGHGTVDTRAAFEALLTEMGEELGIDSLKIR 255
Query: 160 RSNLFVTGNLTHYNQVLEHCTLGRCFEQVHESGKYKERRKQCEEFNRHNRLRKRGVAIVP 219
+ N+ Y + + + E K ++ + R ++
Sbjct: 256 QINMLPQ---IPYVTMYAQRVMSYGVPECLEKVKAASGWEERKGKLPKGRGLGIALSHFV 312
Query: 220 VLFGVAFETLFLNQAGALVLIYVDGSVLISHCGTEMGQGIHTKMIQVAARGLNIPAELIF 279
A + + DG + + ++GQG +T QVAA L + I
Sbjct: 313 SGTSTPKHWTGEPHATVNLKLDFDGGITLLTGAADIGQGSNTMASQVAAEVLGVRLSRIR 372
Query: 280 INETATDKVPNASPTAASVGSDLNGMAIL 308
+ + P + + +S + + G A +
Sbjct: 373 VISADSALTPKDNGSYSSRVTFMVGNASI 401
>d2e2aa_ a.7.2.1 (A:) Enzyme IIa from lactose specific PTS, IIa-lac
{Lactococcus lactis [TaxId: 1358]}
Length = 104
Score = 27.3 bits (61), Expect = 1.1
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 256 GQGIHTKMIQVAARGLNIPAELIFIN 281
T M+ A G +P + ++
Sbjct: 53 AHSSQTGMLAREASGEELPYSVTMMH 78
>d2etla1 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydrolase
isozyme l1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 27.2 bits (60), Expect = 2.1
Identities = 13/57 (22%), Positives = 23/57 (40%)
Query: 3 NPPDTAVTKSNNEVILDANNEKPVNDDLSEDEEAVLNFVTYLDRDEDIVMTGQRNPF 59
+P D A NE I A++ D++ +F+ + + D + R PF
Sbjct: 125 SPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPF 181
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid
dehydrogenase, PP module {Thermus thermophilus [TaxId:
274]}
Length = 362
Score = 26.4 bits (57), Expect = 5.1
Identities = 18/147 (12%), Positives = 38/147 (25%), Gaps = 3/147 (2%)
Query: 72 KLQVCEVWLYNNAGCSYDLSTAVMRRAIFHCTNSFYVPHVRVNAFVCKTNLSSNTAFR-- 129
QV + A D + A+ F + V + + +
Sbjct: 160 TGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADK 219
Query: 130 AFGAPQSLLIAETMGHHVAQFLKLDYADFARSNLFVTGNLTHYNQVLEHCTLGRCFEQVH 189
A + + M + ++ + + AR + + H +
Sbjct: 220 AHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRP 279
Query: 190 ESGKYKERRKQCEEFNRHNRLRKRGVA 216
+ R+K R L RG+
Sbjct: 280 KEEVAFWRKKDPIPRFR-RFLEARGLW 305
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 171
Score = 25.5 bits (55), Expect = 7.9
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 191 SGKYKERRKQCEEFNRHNR 209
S +Y ER++ EE R
Sbjct: 17 SSEYAERKRIAEESLRILG 35
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 25.0 bits (54), Expect = 9.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 191 SGKYKERRKQCEEFNRH 207
S +Y RR+QCEE R
Sbjct: 17 SSEYPVRRRQCEEVARA 33
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.402
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,126,194
Number of extensions: 50340
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 10
Length of query: 311
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,240,546
Effective search space: 280363396
Effective search space used: 280363396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)