BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14055
(493 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F0A|B Chain B, Crystal Structure Of Xwnt8 In Complex With The
Cysteine-Rich Domain Of Frizzled 8
Length = 316
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 65/113 (57%), Gaps = 3/113 (2%)
Query: 220 LIRSTRQVYVYLTVVAAGARMGIEECQNQFKMSRWNCTTFGNTSQVFG-SVLTFKSRETA 278
L+ + Y VA GA+ GIEEC+ QF RWNC +T Q+ + L +RET+
Sbjct: 8 LMTGPKAYLTYSASVAVGAQNGIEECKYQFAWERWNCPE--STLQLATHNGLRSATRETS 65
Query: 279 FVYAISSAGVAYAVTRACSRGELNECSCDNRVRLKKPRTSWQWGGCSERFDRG 331
FV+AISSAGV Y +TR CS G+ + C CD+ + W WGGCS+ + G
Sbjct: 66 FVHAISSAGVMYTLTRNCSMGDFDNCGCDDSRNGRIGGRGWVWGGCSDNAEFG 118
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 50/125 (40%), Gaps = 23/125 (18%)
Query: 345 RKRNVKRLRSAVRDA-KQPNRTELVYMEESPDYCQRNETRVRLWRDIHFGEKFSRDFVDS 403
R N R A+ DA +EL+++E+SPDYC +N I G
Sbjct: 205 RSGNSADNRGAIADAFSSVAGSELIFLEDSPDYCLKN---------ISLG---------- 245
Query: 404 KEDEDSEEALMNLHNNEAGRRRSXXXXXXXXXXXXXXYMTRIREVEEKCNCKFVWCCNVK 463
+ + E L + N RRS T E+ CNCKF WCC VK
Sbjct: 246 LQGTEGRECLQSGKNLSQWERRSCKRLCTDCGLRVEEKKT---EIISSCNCKFHWCCTVK 302
Query: 464 CEICR 468
CE C+
Sbjct: 303 CEQCK 307
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 23/35 (65%)
Query: 389 DIHFGEKFSRDFVDSKEDEDSEEALMNLHNNEAGR 423
+ FGE+ S+ FVD E ALMNLHNNEAGR
Sbjct: 114 NAEFGERISKLFVDGLETGQDARALMNLHNNEAGR 148
>pdb|1DMT|A Chain A, Structure Of Human Neutral Endopeptidase Complexed With
Phosphoramidon
pdb|1R1H|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1R1I|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1R1J|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1Y8J|A Chain A, Crystal Structure Of Human Nep Complexed With An
Imidazo[4,5- C]pyridine Inhibitor
pdb|2QPJ|A Chain A, Human Nep Complexed With A Bifunctional NepDPP IV
INHIBITOR
pdb|2YB9|A Chain A, Crystal Structure Of Human Neutral Endopeptidase Complexed
With A Heteroarylalanine Diacid
Length = 696
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 23 SQETIESQGVEPLTSILDSLGGWPLISPAWTP---AQFDMNRLFAQSIRRWSVHHLFSVF 79
++ I+S+G EPL +L + GWP+ + W A + + AQ ++ L ++F
Sbjct: 91 NESAIDSRGGEPLLKLLPDIYGWPVATENWEQKYGASWTAEKAIAQLNSKYGKKVLINLF 150
Query: 80 VNVDRSDSSQKNVHF 94
V D +S +H
Sbjct: 151 VGTDDKNSVNHVIHI 165
>pdb|2L0W|A Chain A, Solution Nmr Structure Of The N-Terminal Pas Domain Of
Herg Potassium Channel
Length = 138
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 453 NCKFVWCCNVKCEICRYKREEYLN-PRNCEKLFSKR 487
NC ++C + CE+C Y R E + P C+ L R
Sbjct: 41 NCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPR 76
>pdb|2L4R|A Chain A, Nmr Solution Structure Of The N-Terminal Pas Domain Of
Herg
Length = 135
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 453 NCKFVWCCNVKCEICRYKREEYLN-PRNCEKLFSKR 487
NC ++C + CE+C Y R E + P C+ L R
Sbjct: 38 NCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPR 73
>pdb|1DAP|A Chain A, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+
pdb|1DAP|B Chain B, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+
pdb|3DAP|A Chain A, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+ And
The Inhibitor 5s-Isoxazoline
pdb|3DAP|B Chain B, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+ And
The Inhibitor 5s-Isoxazoline
pdb|1F06|A Chain A, Three Dimensional Structure Of The Ternary Complex Of
Corynebacterium Glutamicum Diaminopimelate Dehydrogenase
Nadph-l-2-amino-6-methylene- Pimelate
pdb|1F06|B Chain B, Three Dimensional Structure Of The Ternary Complex Of
Corynebacterium Glutamicum Diaminopimelate Dehydrogenase
Nadph-l-2-amino-6-methylene- Pimelate
pdb|2DAP|A Chain A, C. Glutamicum Dap Dehydrogenase In Complex With Dap
Length = 320
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 41 SLGGWPLISPAWTPAQFDMNRLFAQSIRRWSVHHLF 76
+ G L+S W P F +NR++A ++ H F
Sbjct: 108 AAGNVALVSTGWDPGMFSINRVYAAAVLAEHQQHTF 143
>pdb|3DWB|A Chain A, Structure Of Human Ece-1 Complexed With Phosphoramidon
Length = 670
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 27 IESQGVEPLTSILDSLGGWPLISPAWTPAQFDMNRLFAQSIRRWSVHHLFSVFVNVDRSD 86
IE +PL +++ LGGW + P W F + R S FSV+V+ D S
Sbjct: 91 IEELRAKPLMELIERLGGWNITGP-WAKDNFQDTLQVVTAHYRTSP--FFSVYVSAD-SK 146
Query: 87 SSQKNV 92
+S NV
Sbjct: 147 NSNSNV 152
>pdb|1O8P|A Chain A, Unbound Structure Of Cscbm6-3 From Clostridium
Stercorarium
Length = 151
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 87 SSQKNVHFGSGATSVAEQLGLQESSALSNQISMP 120
++ KN+ FG GATSV ++ Q ++ + ++ P
Sbjct: 63 TTYKNIDFGDGATSVTARVATQNATTIQVRLGSP 96
>pdb|1BYW|A Chain A, Structure Of The N-Terminal Domain Of The Human-Erg
Potassium Channel
Length = 110
Score = 28.9 bits (63), Expect = 7.5, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 453 NCKFVWCCNVKCEICRYKREEYLN-PRNCEKL 483
NC ++C + CE+C Y R E + P C+ L
Sbjct: 13 NCAVIYCNDGFCELCGYSRAEVMQRPCTCDFL 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,734,185
Number of Sequences: 62578
Number of extensions: 527753
Number of successful extensions: 1412
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1403
Number of HSP's gapped (non-prelim): 16
length of query: 493
length of database: 14,973,337
effective HSP length: 103
effective length of query: 390
effective length of database: 8,527,803
effective search space: 3325843170
effective search space used: 3325843170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)