RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14055
(493 letters)
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex,
frizzled, fatty acylation, glycosylation, signaling
protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus
laevis}
Length = 316
Score = 105 bits (262), Expect = 2e-25
Identities = 46/113 (40%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 220 LIRSTRQVYVYLTVVAAGARMGIEECQNQFKMSRWNCTTFGNTSQVFGSVLTFKSRETAF 279
L+ + Y VA GA+ GIEEC+ QF RWNC + L +RET+F
Sbjct: 8 LMTGPKAYLTYSASVAVGAQNGIEECKYQFAWERWNCPESTLQL-ATHNGLRSATRETSF 66
Query: 280 VYAISSAGVAYAVTRACSRGELNECSCDNRVRLKKPRTSWQWGGCSERFDRGN 332
V+AISSAGV Y +TR CS G+ + C CD+ + W WGGCS+ + G
Sbjct: 67 VHAISSAGVMYTLTRNCSMGDFDNCGCDDSRNGRIGGRGWVWGGCSDNAEFGE 119
Score = 91.2 bits (225), Expect = 2e-20
Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 26/135 (19%)
Query: 342 NNQRKRNVKRLRSAVRDAKQPNRTELVYMEESPDYCQRNETRVRLWRDIHFGEKFSRDFV 401
+ + + +EL+++E+SPDYC +N G + R+ +
Sbjct: 203 KMRSGNSADNRGAIADAFSSVAGSELIFLEDSPDYCLKNI------SLGLQGTE-GRECL 255
Query: 402 DSKEDEDSEEALMNLHNNEAGRRRSLGLDGCKLLCC--GRGYMTRIREVEEKCNCKFVWC 459
S ++ E CK LC G + E+ CNCKF WC
Sbjct: 256 QSGKNLSQWER-----------------RSCKRLCTDCGLRVEEKKTEIISSCNCKFHWC 298
Query: 460 CNVKCEICRYKREEY 474
C VKCE C+ ++
Sbjct: 299 CTVKCEQCKQVVIKH 313
Score = 40.4 bits (93), Expect = 8e-04
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 16/76 (21%)
Query: 389 DIHFGEKFSRDFVDSKEDEDSEEALMNLHNNEAGRRRSLGLDGCKLLCCGRGYMTRIREV 448
+ FGE+ S+ FVD E ALMNLHNNEAGR + +
Sbjct: 114 NAEFGERISKLFVDGLETGQDARALMNLHNNEAGRLA----------------VKETMKR 157
Query: 449 EEKCNCKFVWCCNVKC 464
KC+ C C
Sbjct: 158 TCKCHGISGSCSIQTC 173
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
2yb9_A*
Length = 696
Score = 56.7 bits (137), Expect = 1e-08
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 25 ETIESQGVEPLTSILDSLGGWPLISPAWTP---AQFDMNRLFAQSIRRWSVHHLFSVFVN 81
I+S+G EPL +L + GWP+ + W A + + AQ ++ L ++FV
Sbjct: 93 SAIDSRGGEPLLKLLPDIYGWPVATENWEQKYGASWTAEKAIAQLNSKYGKKVLINLFVG 152
Query: 82 VDRSDSSQKNVHFGSG 97
D +S +H
Sbjct: 153 TDDKNSVNHVIHIDQP 168
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation,
glycoprotein, hirschsprung diseas hydrolase, membrane,
metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens}
Length = 670
Score = 51.3 bits (123), Expect = 5e-07
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 25 ETIESQGVEPLTSILDSLGGWPLISPAWTPAQFDMNRLFAQSIRRWSVHHLFSVFVNVDR 84
IE +PL +++ LGGW + P W F + FSV+V+ D
Sbjct: 89 TRIEELRAKPLMELIERLGGWNITGP-WAKDNF--QDTLQVVTAHYRTSPFFSVYVSADS 145
Query: 85 SDSSQKNVHFGSG 97
+S+ +
Sbjct: 146 KNSNSNVIQVDQS 158
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.6 bits (120), Expect = 1e-06
Identities = 53/363 (14%), Positives = 109/363 (30%), Gaps = 100/363 (27%)
Query: 133 VKDSLKDICTR--FDFL---GHRQQYLVLGIWTGSSSPNLYCDIIA--VKDILKDICTRF 185
V+D K I ++ D + + WT S +++ V+++L+ +
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE---EMVQKFVEEVLRI---NY 91
Query: 186 DFLGHRQQYLCTLNENILNVYLIVCVLIKYQQVDLIRSTRQVYVYLTVVAAGARMGIEEC 245
FL + + +Y+ +Q D + + QV+ V R +
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYI--------EQRDRLYNDNQVFAKYNVS----R---LQP 136
Query: 246 QNQFKMSRWNCTTFGNTSQVFGSVLTFKSRETAFVYAISSAGVAYAVTRACSRGELNECS 305
+ + + +L + + + + +G + C
Sbjct: 137 YLKLRQA----------------LLELRPAKNVLIDGVLGSGKTWVALDVCL-------- 172
Query: 306 CDNRVRLKKP-RTSWQWGGCSERFDRGNCNRYGLIVVNNQRKRNVKRLRSAVRDAKQPNR 364
+V+ K + W + NCN ++ Q+
Sbjct: 173 -SYKVQCKMDFKIFW--------LNLKNCNSPETVLEMLQK------------------- 204
Query: 365 TELVYMEESPDYCQRNETRVRLWRDIHFGEKFSRDFVDSKEDEDSEEALMNLHN-NEAGR 423
+ + P++ R++ + IH + R + SK E L+ L N A
Sbjct: 205 ---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---PYENCLLVLLNVQNAKA 258
Query: 424 RRSLGLDGCKLLCCGRGYMTRIREVEEKCNCKFVWCCNVKCEICRYKREEYLNPRNCEKL 483
+ L CK+L TR ++V + + I L P + L
Sbjct: 259 WNAFNL-SCKIL-----LTTRFKQVTDFLS------AATTTHISLDHHSMTLTPDEVKSL 306
Query: 484 FSK 486
K
Sbjct: 307 LLK 309
Score = 38.3 bits (88), Expect = 0.006
Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 23/118 (19%)
Query: 387 WRDI--HFGEKFSRDFVDSKEDED-------SEEA--LMNLHNNEAGRRRSLGLDGCKLL 435
++DI F + F +F D K+ +D EE ++ + +G R LL
Sbjct: 18 YKDILSVFEDAFVDNF-DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT----LL 72
Query: 436 CCG-RGYMTRIREVEEKCNCKFVWC-CNVKCEICRYKREEYLNPR----NCEKLFSKR 487
+ EV N KF+ + Y+ R N ++F+K
Sbjct: 73 SKQEEMVQKFVEEVLRI-NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex,
pathogenicity, phagosome matura; HET: RDF 211 PGE PG4;
2.60A {Mycobacterium tuberculosis}
Length = 699
Score = 45.1 bits (107), Expect = 4e-05
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 25 ETIESQGVEPLTSILDSLGGWPLISPAWTPAQFDMNRLFAQSIRRWSVHHLFSVFVNVDR 84
E +E GV+PL L ++ ++ ++R V V+V+ D
Sbjct: 127 EAVERAGVQPLHDELATIDSA--------ADATELAAALGT-LQRAGVGGGIGVYVDTDS 177
Query: 85 SDSSQKNVHFGSGATS 100
DS++ VHF
Sbjct: 178 KDSTRYLVHFTQSGIG 193
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 2e-04
Identities = 30/161 (18%), Positives = 56/161 (34%), Gaps = 64/161 (39%)
Query: 105 LGLQESSALSNQISMPRPQALTSSNVIAVKDSLKDICTRFDFLGHRQQYLVLGIWTGSSS 164
LG E +AL+ + ++V++++ ++ + R G Q V G S+
Sbjct: 1764 LG--EYAALA-----------SLADVMSIESLVEVVFYR----GMTMQVAVPRDELGRSN 1806
Query: 165 PNLYCDIIAV----------KDILKDICTRFDFLGHRQQYLCTL-NENILNVYLIVCVLI 213
+IA+ ++ L+ + R +G R +L + N N+ N
Sbjct: 1807 Y----GMIAINPGRVAASFSQEALQYVVER---VGKRTGWLVEIVNYNVEN--------- 1850
Query: 214 KYQQVDLIRSTRQVYVYLTVVAAGARMGIE---ECQNQFKM 251
QQ VAAG ++ N K+
Sbjct: 1851 --QQY---------------VAAGDLRALDTVTNVLNFIKL 1874
Score = 35.4 bits (81), Expect = 0.053
Identities = 9/45 (20%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 7 VVKALAWLTGGRV----FN-PSQETI---ESQGVEPLTSILDSLG 43
VV+ + TG V +N +Q+ + + + ++ +T++L+ +
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK 1873
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.069
Identities = 6/30 (20%), Positives = 17/30 (56%), Gaps = 11/30 (36%)
Query: 346 KRNVKRLRSAVRDAKQPNRTELVYMEES-P 374
K+ +K+L+++++ +Y ++S P
Sbjct: 19 KQALKKLQASLK----------LYADDSAP 38
Score = 32.2 bits (72), Expect = 0.16
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 6/28 (21%)
Query: 28 ESQGVEPLTSILDSLGGWPLISPAWTPA 55
E Q ++ L + SL L + PA
Sbjct: 18 EKQALKKLQA---SL---KLYADDSAPA 39
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 32.2 bits (73), Expect = 0.53
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 12/71 (16%)
Query: 345 RKRNVKRLRSAVR---DAKQPNRTELVYMEESPDYCQRNETRV------RLWRDIHFGE- 394
+ R +SA + + N+ L +E Y E V R+ +D G
Sbjct: 1475 VAKVSAREKSAYKFFHNGMIYNK--LFVSKEHAPYTDELEEDVYLDPLARVSKDKKSGSL 1532
Query: 395 KFSRDFVDSKE 405
F+ + SK+
Sbjct: 1533 TFNSKNIQSKD 1543
>1j7x_A IRBP, interphotoreceptor retinoid-binding protein; beta BETA alpha
spiral, transport protein; 1.80A {Xenopus laevis} SCOP:
c.14.1.2
Length = 302
Score = 29.7 bits (67), Expect = 2.4
Identities = 3/21 (14%), Positives = 7/21 (33%)
Query: 14 LTGGRVFNPSQETIESQGVEP 34
+ + + + GV P
Sbjct: 258 VPIINFIDSNGDYWLGGGVVP 278
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 27.6 bits (61), Expect = 6.3
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 352 LRSAVRDAKQPNRTELVY-MEESPDYCQRNETRVRLWRDIHFGEKFSRDFVDSKEDEDSE 410
+A + N+ ++ CQ V W + F+ + DSE
Sbjct: 31 FETAKECGQMQNKWLMINIQNVQDFACQCLNRDV--WSNEAVKNIIREHFIFWQVYHDSE 88
Query: 411 EA 412
E
Sbjct: 89 EG 90
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.424
Gapped
Lambda K H
0.267 0.0430 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,533,353
Number of extensions: 446648
Number of successful extensions: 782
Number of sequences better than 10.0: 1
Number of HSP's gapped: 773
Number of HSP's successfully gapped: 20
Length of query: 493
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 396
Effective length of database: 3,993,456
Effective search space: 1581408576
Effective search space used: 1581408576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)