BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14059
         (220 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1 SV=3
          Length = 18141

 Score =  157 bits (398), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 97/220 (44%), Positives = 124/220 (56%), Gaps = 36/220 (16%)

Query: 1    WYDSELSEYQKERANESTELEKVFDERHAAQATKTPDALMAGTIADMIKRDKIQKKEPEW 60
            WYD EL+ YQKER  +  ELEKVFDER    + ++   L      + +K  + +   P+W
Sbjct: 4198 WYDYELAAYQKER--QENELEKVFDERKQVLSEQSSHTLKG---VEHLKPKQYKPPTPDW 4252

Query: 61   TQAVKTRKTEDYYNKLSKLEEDQLIREARIREASHQVGIPQERVSVSSKA---AQKYERD 117
             Q VK +K+EDYYNKL  LE +QL++E  +R  +HQ  IP E+V  SS+A   AQ YE +
Sbjct: 4253 QQNVKAKKSEDYYNKLQTLETEQLLKETNLRRDTHQYAIPGEKVVSSSQAKGMAQSYEEN 4312

Query: 118  LEAAKKEPELQPWQKKNILKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIH 177
            L+      E+Q    K I                             +PS S VHG+E+H
Sbjct: 4313 LQEKTSTTEVQAAPPKGIA----------------------------QPSESSVHGREVH 4344

Query: 178  TAKSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVV 217
              K QQVQKE +GD EI RKITATETTE+EHKG IQERVV
Sbjct: 4345 MNKQQQVQKEIQGDLEITRKITATETTEVEHKGTIQERVV 4384


>sp|Q9JIS1|RIMS2_RAT Regulating synaptic membrane exocytosis protein 2 OS=Rattus
            norvegicus GN=Rims2 PE=1 SV=1
          Length = 1555

 Score = 33.5 bits (75), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 62   QAVKTRKTEDYYNKLSKLEEDQLIREARIREA-SHQVGIPQERVSVSSKAAQKYERDLEA 120
            Q ++  +   +YN +S+++  +++ +    E  SH + +P+ R   +S+   +  RD EA
Sbjct: 980  QGLRGTRATGHYNTISRMDRHRVMDDHYSSERDSHFLTLPRSRHRQTSEHHHRDGRDCEA 1039

Query: 121  AKKEP-------ELQPWQKKNILKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVH 172
            A ++P       E +P  ++   +SR++    + +      ++ GR    P P+ S  H
Sbjct: 1040 ADRQPYHRSRSTEQRPLLERTTTRSRSSERADTNLMRSMPSLMTGRSAP-PSPALSRSH 1097


>sp|P03554|POL_CAMVS Enzymatic polyprotein OS=Cauliflower mosaic virus (strain
           Strasbourg) GN=ORF V PE=3 SV=1
          Length = 679

 Score = 31.6 bits (70), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 17/119 (14%)

Query: 28  HAAQATKTPDALMAGTIADMIKRDKIQKKEPEWTQAVKTRKTEDYYNKLSKLEEDQLIRE 87
           H A+ T+       G +  M KR K Q+ EP     + T K E+       LEE  ++ E
Sbjct: 143 HIAKLTRAVRVGTEGFLESMKKRSKTQQPEP---VNISTNKIEN------PLEEIAILSE 193

Query: 88  ARIREASHQVGIPQERVSVSSKAAQKYERDLEAAKKEPELQPWQKKNILKSRTASSDRS 146
            R R +  ++ I Q+R+       QK E  LE    E  L P + K  +K+    SD S
Sbjct: 194 GR-RLSEEKLFITQQRM-------QKIEELLEKVCSENPLDPNKTKQWMKASIKLSDPS 244


>sp|Q00962|POL_CAMVN Enzymatic polyprotein OS=Cauliflower mosaic virus (strain NY8153)
           GN=ORF V PE=3 SV=1
          Length = 680

 Score = 31.2 bits (69), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 17/119 (14%)

Query: 28  HAAQATKTPDALMAGTIADMIKRDKIQKKEPEWTQAVKTRKTEDYYNKLSKLEEDQLIRE 87
           H A+ T+       G +  M KR K Q+ EP     + T K E+       LEE  ++ E
Sbjct: 144 HIAKLTRAVRVGTEGFLESMKKRSKTQQPEP---VNISTNKIEN------PLEEIAILSE 194

Query: 88  ARIREASHQVGIPQERVSVSSKAAQKYERDLEAAKKEPELQPWQKKNILKSRTASSDRS 146
            R R +  ++ I Q+R+       QK E  LE    E  L P + K  +K+    SD S
Sbjct: 195 GR-RLSEEKLFITQQRM-------QKTEELLEKVCSENPLDPNKTKQWMKASIKLSDPS 245


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.304    0.121    0.321 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,277,104
Number of Sequences: 539616
Number of extensions: 2837698
Number of successful extensions: 10023
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 494
Number of HSP's that attempted gapping in prelim test: 9639
Number of HSP's gapped (non-prelim): 864
length of query: 220
length of database: 191,569,459
effective HSP length: 113
effective length of query: 107
effective length of database: 130,592,851
effective search space: 13973435057
effective search space used: 13973435057
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 59 (27.3 bits)