Query psy14059
Match_columns 220
No_of_seqs 19 out of 21
Neff 2.4
Searched_HMMs 29240
Date Fri Aug 16 18:30:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14059.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14059hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tq7_B Microtubule-associated 24.5 27 0.00091 25.9 1.2 23 59-81 12-36 (82)
2 1q8c_A Hypothetical protein Mg 19.8 82 0.0028 25.7 3.3 64 45-110 41-104 (151)
3 1yez_A MM1357; MAR30, autostru 19.8 26 0.00087 23.6 0.3 10 97-106 43-52 (68)
4 3mtu_A Tropomyosin alpha-1 cha 19.1 40 0.0014 24.0 1.2 12 70-81 33-44 (75)
5 1yvc_A MRR5; structure, autost 18.6 28 0.00096 23.7 0.3 10 97-106 45-54 (70)
6 4e61_A Protein BIM1; EB1-like 18.3 42 0.0014 26.1 1.2 15 67-81 39-53 (106)
7 2nrr_A Uvrabc system protein C 13.9 27 0.00094 28.6 -0.9 15 88-102 138-152 (159)
8 3c65_A Uvrabc system protein C 11.8 47 0.0016 28.2 -0.1 17 87-103 147-163 (226)
9 3nku_A DRRA, SIDM; posttransla 9.0 1E+02 0.0035 26.0 1.0 16 65-80 28-43 (213)
10 2nrt_A Uvrabc system protein C 8.9 51 0.0018 28.0 -0.9 17 87-103 142-158 (220)
No 1
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=24.51 E-value=27 Score=25.95 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=14.7
Q ss_pred hHHHHHhh--hcchHHHHHhhhhhH
Q psy14059 59 EWTQAVKT--RKTEDYYNKLSKLEE 81 (220)
Q Consensus 59 EWQk~VK~--KK~edYYnKL~~LE~ 81 (220)
+|.-+|.. |--+=|||||..+|-
T Consensus 12 eLk~~ve~lEkERDFYF~KLRdIEi 36 (82)
T 3tq7_B 12 DLKLTVDGLEKERDFYFSKLRDIEL 36 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433 334569999999874
No 2
>1q8c_A Hypothetical protein Mg027; structural genomics, NUSB, GI 3 BSGC structure funded by NIH, protein structure initiative; 2.00A {Mycoplasma genitalium} SCOP: a.79.1.2
Probab=19.77 E-value=82 Score=25.65 Aligned_cols=64 Identities=22% Similarity=0.390 Sum_probs=39.5
Q ss_pred hhhccccccCCCChhHHHHHhhhcchHHHHHhhhhhHHHHHHHhhhhhccccccCCCchhhhhhHH
Q psy14059 45 ADMIKRDKIQKKEPEWTQAVKTRKTEDYYNKLSKLEEDQLIREARIREASHQVGIPQERVSVSSKA 110 (220)
Q Consensus 45 ~~~lk~k~~ke~etEWQk~VK~KK~edYYnKL~~LE~eQ~~KE~~lRe~sHQfAIPgEKvv~~S~A 110 (220)
|++|.-+...-+-.+||+.+-+-=+|.-+.-+..+|+.|+-.-..+ .+.---|.|-||---..|
T Consensus 41 a~fl~yd~~er~ln~wqk~ivk~fse~~~~f~~~ie~qq~~nq~ei--q~kynkisgkkidllt~a 104 (151)
T 1q8c_A 41 ADFLEYDTKERQLNEWQKLIVKAFSENIFSFQKKIEEQQLKNQLEI--QTKYNKISGKKIDLLTTA 104 (151)
T ss_dssp HHHHHTCCTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSC--CCC--------CCHHHHH
T ss_pred HHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcccccchhhHHHHH
Confidence 4577777777888999999998889988888888887776432221 223335677777655555
No 3
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=19.75 E-value=26 Score=23.60 Aligned_cols=10 Identities=10% Similarity=0.006 Sum_probs=8.0
Q ss_pred ccCCCchhhh
Q psy14059 97 VGIPQERVSV 106 (220)
Q Consensus 97 fAIPgEKvv~ 106 (220)
+|+|||+|..
T Consensus 43 ~alPGE~V~v 52 (68)
T 1yez_A 43 GTKVGDEVRI 52 (68)
T ss_dssp SCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 6899998853
No 4
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=19.13 E-value=40 Score=24.03 Aligned_cols=12 Identities=33% Similarity=0.636 Sum_probs=9.6
Q ss_pred hHHHHHhhhhhH
Q psy14059 70 EDYYNKLSKLEE 81 (220)
Q Consensus 70 edYYnKL~~LE~ 81 (220)
+=||+||..+|.
T Consensus 33 dFYf~KLRdiE~ 44 (75)
T 3mtu_A 33 DFYFGKLRNIEL 44 (75)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 459999998864
No 5
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=18.56 E-value=28 Score=23.73 Aligned_cols=10 Identities=10% Similarity=-0.011 Sum_probs=8.0
Q ss_pred ccCCCchhhh
Q psy14059 97 VGIPQERVSV 106 (220)
Q Consensus 97 fAIPgEKvv~ 106 (220)
+|+|||+|..
T Consensus 45 ~alPGE~V~v 54 (70)
T 1yvc_A 45 NAEKGSVINV 54 (70)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 6899998853
No 6
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=18.34 E-value=42 Score=26.14 Aligned_cols=15 Identities=40% Similarity=0.569 Sum_probs=11.5
Q ss_pred hcchHHHHHhhhhhH
Q psy14059 67 RKTEDYYNKLSKLEE 81 (220)
Q Consensus 67 KK~edYYnKL~~LE~ 81 (220)
|-.+-||+||..+|-
T Consensus 39 kERDFYF~KLRdIEi 53 (106)
T 4e61_A 39 IEREFYFNKLRDIEI 53 (106)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344569999999874
No 7
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=13.88 E-value=27 Score=28.56 Aligned_cols=15 Identities=20% Similarity=0.552 Sum_probs=12.1
Q ss_pred hhhhhccccccCCCc
Q psy14059 88 ARIREASHQVGIPQE 102 (220)
Q Consensus 88 ~~lRe~sHQfAIPgE 102 (220)
++||.+.|-|||-+-
T Consensus 138 qriRDEaHRFAIt~H 152 (159)
T 2nrr_A 138 VQIRDETHRFAVSYH 152 (159)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 578999999999653
No 8
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=11.77 E-value=47 Score=28.20 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=12.7
Q ss_pred HhhhhhccccccCCCch
Q psy14059 87 EARIREASHQVGIPQER 103 (220)
Q Consensus 87 E~~lRe~sHQfAIPgEK 103 (220)
=++||...|-|||-.-+
T Consensus 147 lq~irDEaHRFAIt~hr 163 (226)
T 3c65_A 147 LQRIQDEVHRFAVMFHR 163 (226)
T ss_dssp HHHHHHHHHHHTTC---
T ss_pred hhhccchhhhhhhhccc
Confidence 46899999999998876
No 9
>3nku_A DRRA, SIDM; posttranslational modification, ampylation, adenylylation, R RAB1, vesicular transport, protein transport; HET: MSE PGE; 2.10A {Legionella pneumophila subsp}
Probab=9.01 E-value=1e+02 Score=26.01 Aligned_cols=16 Identities=44% Similarity=0.683 Sum_probs=13.7
Q ss_pred hhhcchHHHHHhhhhh
Q psy14059 65 KTRKTEDYYNKLSKLE 80 (220)
Q Consensus 65 K~KK~edYYnKL~~LE 80 (220)
-+||-++|-|||.+|-
T Consensus 28 aqkkfeeyqnklanls 43 (213)
T 3nku_A 28 AQKKFEEYQNKLANLS 43 (213)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHH
Confidence 3688999999999984
No 10
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=8.93 E-value=51 Score=27.96 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=14.5
Q ss_pred HhhhhhccccccCCCch
Q psy14059 87 EARIREASHQVGIPQER 103 (220)
Q Consensus 87 E~~lRe~sHQfAIPgEK 103 (220)
=++||...|-|||-.-+
T Consensus 142 lq~iRDEaHRFAIt~hr 158 (220)
T 2nrt_A 142 LVQIRDETHRFAVSYHR 158 (220)
T ss_dssp HHHHHHHHHHHHHGGGH
T ss_pred hhhhcchhhhccccccc
Confidence 36899999999998876
Done!