Query psy14059
Match_columns 220
No_of_seqs 19 out of 21
Neff 2.4
Searched_HMMs 13730
Date Fri Aug 16 18:31:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14059.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14059hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wu9a1 a.245.1.1 (A:191-249) 26.7 11 0.0008 24.9 1.2 12 69-80 24-35 (59)
2 d2nn6i2 b.84.4.2 (I:6-60) Exos 25.7 6.7 0.00049 25.6 -0.1 11 97-107 2-12 (55)
3 d1uwva1 b.40.4.12 (A:15-74) rR 21.1 11 0.00078 23.7 0.3 10 97-106 29-38 (60)
4 d1q8ca_ a.79.1.2 (A:) Hypothet 19.8 39 0.0028 25.4 3.3 64 45-110 30-93 (140)
5 d2oufa1 a.292.1.1 (A:13-92) Hy 15.5 77 0.0056 21.8 3.8 16 17-32 19-34 (80)
6 d1c4ka1 c.23.1.4 (A:1-107) Orn 13.0 35 0.0026 24.5 1.4 10 109-118 97-106 (107)
7 d1yeza1 b.40.4.12 (A:1-68) Hyp 12.4 24 0.0018 22.7 0.3 10 97-106 43-52 (68)
8 d1yvca1 b.40.4.12 (A:1-69) Hyp 11.1 28 0.002 22.5 0.3 9 97-105 45-53 (69)
9 d1gg4a3 c.98.1.1 (A:1-98) UDP- 6.7 75 0.0055 21.1 1.0 26 90-115 34-59 (98)
10 d1lrza1 a.2.7.4 (A:245-309) Me 5.8 1.9E+02 0.014 18.7 2.7 32 65-96 28-59 (65)
No 1
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.69 E-value=11 Score=24.92 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=10.1
Q ss_pred chHHHHHhhhhh
Q psy14059 69 TEDYYNKLSKLE 80 (220)
Q Consensus 69 ~edYYnKL~~LE 80 (220)
-+=|||||..+|
T Consensus 24 RdFYF~KLRdIE 35 (59)
T d1wu9a1 24 RDFYFGKLRNIE 35 (59)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456899999998
No 2
>d2nn6i2 b.84.4.2 (I:6-60) Exosome component 1, EXOSC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.69 E-value=6.7 Score=25.64 Aligned_cols=11 Identities=36% Similarity=0.407 Sum_probs=9.0
Q ss_pred ccCCCchhhhh
Q psy14059 97 VGIPQERVSVS 107 (220)
Q Consensus 97 fAIPgEKvv~~ 107 (220)
|.||||++.+.
T Consensus 2 ~~lPGe~L~~~ 12 (55)
T d2nn6i2 2 YCIPGERLCNL 12 (55)
T ss_dssp CCCTTCEEEET
T ss_pred cccCCcEEeeh
Confidence 89999998653
No 3
>d1uwva1 b.40.4.12 (A:15-74) rRNA (Uracil-5-)-methyltransferase RumA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.11 E-value=11 Score=23.71 Aligned_cols=10 Identities=40% Similarity=0.434 Sum_probs=8.0
Q ss_pred ccCCCchhhh
Q psy14059 97 VGIPQERVSV 106 (220)
Q Consensus 97 fAIPgEKvv~ 106 (220)
+|+|||+|..
T Consensus 29 ~alPGE~V~v 38 (60)
T d1uwva1 29 GLLPQENAEV 38 (60)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 6899998754
No 4
>d1q8ca_ a.79.1.2 (A:) Hypothetical protein MG027 {Mycoplasma genitalium [TaxId: 2097]}
Probab=19.84 E-value=39 Score=25.38 Aligned_cols=64 Identities=22% Similarity=0.390 Sum_probs=39.4
Q ss_pred hhhccccccCCCChhHHHHHhhhcchHHHHHhhhhhHHHHHHHhhhhhccccccCCCchhhhhhHH
Q psy14059 45 ADMIKRDKIQKKEPEWTQAVKTRKTEDYYNKLSKLEEDQLIREARIREASHQVGIPQERVSVSSKA 110 (220)
Q Consensus 45 ~~~lk~k~~ke~etEWQk~VK~KK~edYYnKL~~LE~eQ~~KE~~lRe~sHQfAIPgEKvv~~S~A 110 (220)
|++|.-+...-+-.+||+.+-+-=+|.-+.-+..+|+.|+-.-..+ .+.---|.|-||---..|
T Consensus 30 a~fl~yd~~er~ln~wqk~ivk~fse~~~~f~~~ie~qq~~nq~ei--q~kynkisgkkidllt~a 93 (140)
T d1q8ca_ 30 ADFLEYDTKERQLNEWQKLIVKAFSENIFSFQKKIEEQQLKNQLEI--QTKYNKISGKKIDLLTTA 93 (140)
T ss_dssp HHHHHTCCTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSC--CCC--------CCHHHHH
T ss_pred HHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcccccchhhHHHHH
Confidence 4577777777888999999998889988888888887776432221 223335677777655555
No 5
>d2oufa1 a.292.1.1 (A:13-92) Hypothetical protein HP0242 {Helicobacter pylori [TaxId: 210]}
Probab=15.52 E-value=77 Score=21.78 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=12.0
Q ss_pred hhhhHHHHHHHHHHhh
Q psy14059 17 STELEKVFDERHAAQA 32 (220)
Q Consensus 17 ~tELEkvFdEr~~~~~ 32 (220)
+.|||++|+..-++.-
T Consensus 19 ~~ELek~lerlaamE~ 34 (80)
T d2oufa1 19 KKELERLLELLALLET 34 (80)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3899999987766543
No 6
>d1c4ka1 c.23.1.4 (A:1-107) Ornithine decarboxylase N-terminal "wing" domain {Lactobacillus sp., strain 30a [TaxId: 1591]}
Probab=13.05 E-value=35 Score=24.51 Aligned_cols=10 Identities=30% Similarity=0.617 Sum_probs=8.4
Q ss_pred HHHHHHHHhH
Q psy14059 109 KAAQKYERDL 118 (220)
Q Consensus 109 ~AAq~YEe~L 118 (220)
.||.+||++|
T Consensus 97 aAA~~Ye~~L 106 (107)
T d1c4ka1 97 TAVNNYEDSI 106 (107)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 4699999987
No 7
>d1yeza1 b.40.4.12 (A:1-68) Hypothetical protein MM1357 {Methanosarcina mazei [TaxId: 2209]}
Probab=12.37 E-value=24 Score=22.66 Aligned_cols=10 Identities=10% Similarity=0.006 Sum_probs=7.7
Q ss_pred ccCCCchhhh
Q psy14059 97 VGIPQERVSV 106 (220)
Q Consensus 97 fAIPgEKvv~ 106 (220)
+|+|||+|..
T Consensus 43 galpGe~v~v 52 (68)
T d1yeza1 43 GTKVGDEVRI 52 (68)
T ss_dssp SCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 6889998753
No 8
>d1yvca1 b.40.4.12 (A:1-69) Hypothetical protein MMP0076 {Methanococcus maripaludis [TaxId: 39152]}
Probab=11.12 E-value=28 Score=22.51 Aligned_cols=9 Identities=0% Similarity=-0.138 Sum_probs=7.1
Q ss_pred ccCCCchhh
Q psy14059 97 VGIPQERVS 105 (220)
Q Consensus 97 fAIPgEKvv 105 (220)
+|+|||+|.
T Consensus 45 ~alPGe~V~ 53 (69)
T d1yvca1 45 NAEKGSVIN 53 (69)
T ss_dssp TCCTTCEEE
T ss_pred CCCCCCEEE
Confidence 588998875
No 9
>d1gg4a3 c.98.1.1 (A:1-98) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}
Probab=6.67 E-value=75 Score=21.06 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=18.6
Q ss_pred hhhccccccCCCchhhhhhHHHHHHH
Q psy14059 90 IREASHQVGIPQERVSVSSKAAQKYE 115 (220)
Q Consensus 90 lRe~sHQfAIPgEKvv~~S~AAq~YE 115 (220)
+....=-|||||++.-++.-+.++++
T Consensus 34 i~~g~lFvAl~G~~~dGh~fi~~A~~ 59 (98)
T d1gg4a3 34 LTPGCLFVALKGERFDAHDFADQAKA 59 (98)
T ss_dssp CCTTCEEECCBCSSCBTTTTHHHHHH
T ss_pred CCCCCEEEEEeccccChHHHHHHHHH
Confidence 34445578999999988877755554
No 10
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=5.80 E-value=1.9e+02 Score=18.66 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=24.7
Q ss_pred hhhcchHHHHHhhhhhHHHHHHHhhhhhcccc
Q psy14059 65 KTRKTEDYYNKLSKLEEDQLIREARIREASHQ 96 (220)
Q Consensus 65 K~KK~edYYnKL~~LE~eQ~~KE~~lRe~sHQ 96 (220)
+.-.|.-++|++.+|+.---.-+.||-|+.+.
T Consensus 28 knP~skK~~nk~~el~~Q~~s~~~ki~Ea~~l 59 (65)
T d1lrza1 28 KRPENKKAHNKRDNLQQQLDANEQKIEEGKRL 59 (65)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456778999999999888888888777654
Done!