RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14059
(220 letters)
>gnl|CDD|238503 cd01021, GEWL, Goose Egg White Lysozyme domain. Eukaryotic
"goose-type" lysozymes (GEWL). These enzymes catalyze
the cleavage of the beta-1,4-glycosidic bond between
N-acetylmuramic acid (MurNAc) and N-acetylglucosamine
(GlcNAc). Members include tunicate, Japanese flounder,
ostrich, and mouse.
Length = 166
Score = 30.1 bits (68), Expect = 0.59
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 10/42 (23%)
Query: 26 ERHAAQATKTPDALMAGTIADMIKRDKIQKKEPEWTQAVKTR 67
E H +QAT + D IK IQ+K P WT+ + +
Sbjct: 93 EEHLSQAT--------EILIDRIKA--IQRKFPTWTKEQQLK 124
>gnl|CDD|182663 PRK10707, PRK10707, putative NUDIX hydrolase; Provisional.
Length = 190
Score = 29.6 bits (67), Expect = 1.0
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 81 EDQLIREARIREASHQVGIPQERVSV 106
D + +REA +V IP V V
Sbjct: 72 TDASLIATALREAQEEVAIPPSAVEV 97
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 28.9 bits (65), Expect = 2.7
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Query: 85 IREARIREASHQVGIPQERVSVSSKAAQKYERDLEAAKKE--PELQPWQKKNILKSRTAS 142
+ +REA+ V + R + K E+DLE +E P+ + + ++
Sbjct: 292 VTAEDVREAAELVLPHRRRRKPFEQPQGKDEKDLEEKPEEPGPDPEKPDEGEDDAEQSGP 351
Query: 143 SDRSGVSTEETKIIDGRKVSVPEPSASGVHGK 174
++ K D ++ + + S++ G
Sbjct: 352 RGHPTPGNDDEKEPDPQEEADGQGSSTDPAGD 383
>gnl|CDD|219891 pfam08538, DUF1749, Protein of unknown function (DUF1749). This is
a plant and fungal family of unknown function. This
family contains many hypothetical proteins.
Length = 303
Score = 28.1 bits (63), Expect = 3.1
Identities = 10/49 (20%), Positives = 17/49 (34%)
Query: 123 KEPELQPWQKKNILKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGV 171
+ + W K L +R + + + II G +V SA
Sbjct: 242 NDEFVPEWVDKEDLLARWKRFTKKKYWSSLSGIIPGATHNVGGKSAEEA 290
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
golgi membrane of fungi and animals , and is of
particular importance in the sarcoplasmic reticulum of
skeletal and cardiac muscle in vertebrates. The calcium
P-type ATPases have been characterized as Type IIA based
on a phylogenetic analysis which distinguishes this
group from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the former of which is
modelled by TIGR01116.
Length = 884
Score = 27.9 bits (62), Expect = 5.8
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 150 TEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEMEHK 209
++ET + R++ +P ++ V G+++ QQ+ +IV K+ EHK
Sbjct: 554 SQETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQL-------SQIVPKVAVFARASPEHK 606
Query: 210 GKI 212
KI
Sbjct: 607 MKI 609
>gnl|CDD|180462 PRK06198, PRK06198, short chain dehydrogenase; Provisional.
Length = 260
Score = 27.3 bits (61), Expect = 6.9
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 24 FDERHAAQATKTPDALMAGTIADMIKRD 51
FD RH A + P LM I M +R
Sbjct: 108 FD-RHFAVNVRAPFFLMQEAIKLMRRRK 134
>gnl|CDD|233308 TIGR01198, pgl, 6-phosphogluconolactonase. This enzyme of the
pentose phosphate pathway is often found as a part of a
multifunctional protein with [Energy metabolism, Pentose
phosphate pathway].
Length = 233
Score = 26.6 bits (59), Expect = 9.1
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 83 QLIREA---RIREASHQVGIPQERVSVSSKAAQKYERDLEAAKKEPELQP 129
L REA R+ + + +S +AA+ YE++L AA +P + P
Sbjct: 77 GLAREALLDRVAIPASNIHPMPTELSDIEEAAELYEQELAAA-FQPIVFP 125
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.304 0.121 0.321
Gapped
Lambda K H
0.267 0.0692 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,620,305
Number of extensions: 963569
Number of successful extensions: 727
Number of sequences better than 10.0: 1
Number of HSP's gapped: 724
Number of HSP's successfully gapped: 72
Length of query: 220
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 127
Effective length of database: 6,812,680
Effective search space: 865210360
Effective search space used: 865210360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 57 (25.8 bits)