RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14059
         (220 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 22/119 (18%)

Query: 9   YQKERANESTELEKVF-D----E---RHAAQATKTPDALMAGTIADMIK-RDKIQKKEPE 59
              E     T    VF D    E   RH + A     +++  T+  +   +  I   +P+
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN-TLQQLKFYKPYICDNDPK 540

Query: 60  WTQAVKTRKTEDYYNKLSKLEEDQLIR--EARIREASHQVGIPQERVSVSSKAAQKYER 116
           + + V         + L K+EE+ LI      +     ++ +  E  ++  +A ++ +R
Sbjct: 541 YERLVN-----AILDFLPKIEEN-LICSKYTDLL----RIALMAEDEAIFEEAHKQVQR 589



 Score = 30.2 bits (67), Expect = 0.67
 Identities = 24/221 (10%), Positives = 52/221 (23%), Gaps = 75/221 (33%)

Query: 16  ESTEL------EKVFDERHAAQATKT-PDALMAGTIADMIKRDKIQKKEPEWTQAVKTRK 68
           E   L       +  D     +   T P       IA+ I+          W      + 
Sbjct: 302 EVKSLLLKYLDCRPQDLPR--EVLTTNP--RRLSIIAESIRDGLATWDN--WKHVNCDKL 355

Query: 69  TE---------------DYYNKLSKLEEDQLIREARIREASHQVGIPQERVSVSSKAAQK 113
           T                  +++LS                     IP   +S+       
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPS--------------AHIPTILLSL------- 394

Query: 114 YERDLEAAKKEPELQPWQKKNILKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHG 173
              D+  +     +    K ++++ +                        P+ S   +  
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQ------------------------PKESTISIPS 430

Query: 174 KEIHTAKSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQE 214
             I+     +++ E    + IV      +T + +       
Sbjct: 431 --IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469


>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
           alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
           HET: HEM BHF; 2.70A {Homo sapiens}
          Length = 507

 Score = 27.2 bits (61), Expect = 4.6
 Identities = 8/64 (12%), Positives = 18/64 (28%), Gaps = 12/64 (18%)

Query: 3   DSELSEYQKERANESTELEKVFDERHAAQATKTPDALMAGT----------IADMIKRDK 52
           D+ +   +K+ A +S       D  +        D   A            +    +   
Sbjct: 254 DAFILSAEKKAAGDSHGGGARLDLENVPATIT--DIFGASQDTLSTALQWLLLLFTRYPD 311

Query: 53  IQKK 56
           +Q +
Sbjct: 312 VQTR 315


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.304    0.121    0.321 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,112,767
Number of extensions: 176115
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 23
Length of query: 220
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 130
Effective length of database: 4,188,903
Effective search space: 544557390
Effective search space used: 544557390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.5 bits)