BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14060
(283 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 122 LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ 181
L +++E+KP P FTK I E ARF+ + +G P P + WF++D P+ S FQ
Sbjct: 30 LEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQ 89
Query: 182 I-HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
I + L + +V +D + A N G+A C+A L+VE
Sbjct: 90 IDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 235 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
V P F TI + G ARFD K+ +V W K
Sbjct: 40 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFK 77
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 122 LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ 181
L +++E+KP P FTK I E ARF+ + +G P P + WF++D P+ S FQ
Sbjct: 30 LEEVAEEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQ 89
Query: 182 I-HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
I + L + +V +D + A N G+A C+A L+VE
Sbjct: 90 IDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 235 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
V P F TI + G ARFD K+ +V W K
Sbjct: 40 VKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFK 77
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
+PP F + ++ A + + + DG P I W++E + S+P +++ + + L
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
++ +V D G + AEN G SA LV++E++ +PPSF + +G
Sbjct: 64 VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERK-------LPPSFARKLKDVHETLG 116
Query: 252 QLARFDAKISATKPLDVYWLK 272
F+ +I+ ++PL V W K
Sbjct: 117 FPVAFECRINGSEPLQVSWYK 137
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 132 KPPVFTKKIQPCRAFEQDQ-ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
+PP F KK++P R +QD+ R+E + G P + W++++ I S F++ + ++
Sbjct: 289 EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV 348
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250
L M + +EDSG + A N G A S +L V+E PP F
Sbjct: 349 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE----------PPVFRKKPHPVETLK 398
Query: 251 GQLARFDAKISATKPLDVYWLK 272
G + ++ T P V W K
Sbjct: 399 GADVHLECELQGTPPFQVSWHK 420
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 10/141 (7%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
+PPVF KK P + E E G P + W ++ + S ++I + + + +
Sbjct: 383 EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSI 442
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
+ V D G + A N G C ++ ++ PP F+ +S VG
Sbjct: 443 HILNVDSADIGEYQCKASNDVGSDTCVGSITLK----------APPRFVKKLSDISTVVG 492
Query: 252 QLARFDAKISATKPLDVYWLK 272
+ + A I +P+ V W K
Sbjct: 493 EEVQLQATIEGAEPISVAWFK 513
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 17/199 (8%)
Query: 81 KITATETTEMEHKGKIQERVVDASELDDDGYYAI-TERKYYALSD---LSEQKPAKPPVF 136
K+ + +M+ K + V++ + D G Y E A++ L ++ PP F
Sbjct: 45 KLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSF 104
Query: 137 TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ---IHTFSTKSILIM 193
+K++ FE +G + W+++ + + Q IH +T IL
Sbjct: 105 ARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQT 164
Query: 194 RQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQL 253
Q + G + A N G A SA L + E VPP F S + +G+
Sbjct: 165 DQSHV---GQYNCSASNPLGTASSSAKLTLSEHE-------VPPFFDLKPVSVDLALGES 214
Query: 254 ARFDAKISATKPLDVYWLK 272
F ++ T P+ + W K
Sbjct: 215 GTFKCHVTGTAPIKITWAK 233
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 11/141 (7%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
PP F K + F+ G I W +++ I ++++ + L
Sbjct: 197 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 256
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTIS-SAVINVG 251
+ +V D+G + A N GK CSA L V+E PP F+ + S ++
Sbjct: 257 VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE----------PPRFIKKLEPSRIVKQD 306
Query: 252 QLARFDAKISATKPLDVYWLK 272
+ R++ KI + + V W K
Sbjct: 307 EHTRYECKIGGSPEIKVLWYK 327
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK-SIL 191
PP F KK+ ++ + + +G ++ WF++ I D ++S + L
Sbjct: 477 PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATL 536
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
+ ++G + +N G +C A L V E
Sbjct: 537 QFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
PP F +++Q + Q R +V G P P +K++R+ I SS DFQI L+
Sbjct: 103 PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLL 162
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
+ + + EDSG ++V A N G+A +A L+V+
Sbjct: 163 IAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS--PDFQIHTFSTKS 189
+ P FT+ +Q E A FE G P+P + WFR+ I++S P QI ++
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVIN 249
L + V +SG +++ A N G+A +A L+V+ + PP+F+ + S +
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE-------TAPPNFVQRLQSMTVR 116
Query: 250 VGQLARFDAKISA 262
G R +++
Sbjct: 117 QGSQVRLQVRVTG 129
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
PP F +++Q + Q R +V G P P +K++R+ I SS DFQI L+
Sbjct: 103 PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLL 162
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
+ + + EDSG ++V A N G+A +A L+V+
Sbjct: 163 IAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 9/131 (6%)
Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS--PDFQIHTFSTKSIL 191
P FT+ +Q E A FE G P+P + WFR+ I++S P QI ++ L
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
+ V +SG +++ A N G+A +A L+V+ + PP+F+ + S + G
Sbjct: 66 TIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE-------TAPPNFVQRLQSMTVRQG 118
Query: 252 QLARFDAKISA 262
R +++
Sbjct: 119 SQVRLQVRVTG 129
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Query: 107 DDDGYY-AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTI 165
DD G Y + K +S +E PP F A+E FE G P+PT+
Sbjct: 285 DDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTV 344
Query: 166 KWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
W + + S FQI S IL V D G + +AEN G A+ SA L+V
Sbjct: 345 NWMKNGDVVIPSDYFQIVGGSNLRIL---GVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSP-DFQIHTFSTKS 189
A P F + + AF D + E GDP+PTI W + + P D ++ + +
Sbjct: 119 AGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA 178
Query: 190 ILIMRQVFMEDSGVFAVIAEN 210
+ I R + DSGV+ A N
Sbjct: 179 LQISR-LQPGDSGVYRCSARN 198
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 132 KPPVFTKKIQPCRAFEQDQ-ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
+PP F KK++P R +QD+ R+E + G P + W++++ I S F++ + ++
Sbjct: 97 EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV 156
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250
L M + +EDSG + A N G A S +L V+E PP F
Sbjct: 157 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE----------PPVFRKKPHPVETLK 206
Query: 251 GQLARFDAKISATKPLDVYWLK 272
G + ++ T P V W K
Sbjct: 207 GADVHLECELQGTPPFQVSWHK 228
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 11/141 (7%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
PP F K + F+ G I W +++ I ++++ + L
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTIS-SAVINVG 251
+ +V D+G + A N GK CSA L V+E PP F+ + S ++
Sbjct: 65 VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE----------PPRFIKKLEPSRIVKQD 114
Query: 252 QLARFDAKISATKPLDVYWLK 272
+ R++ KI + + V W K
Sbjct: 115 EHTRYECKIGGSPEIKVLWYK 135
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 39/93 (41%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
+PPVF KK P + E E G P + W ++ + S ++I + + + +
Sbjct: 191 EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSI 250
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
+ V D G + A N G C ++ ++
Sbjct: 251 HILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 133 PPVFTKKIQPCRAFEQDQ-ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
PP F KK++P R +QD+ R+E + G P + W++++ I S F++ + ++L
Sbjct: 98 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVL 157
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
M + +EDSG + A N G A S +L V+E PP F G
Sbjct: 158 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE----------PPVFRKKPHPVETLKG 207
Query: 252 QLARFDAKISATKPLDVYWLK 272
+ ++ T P V W K
Sbjct: 208 ADVHLECELQGTPPFQVSWHK 228
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 11/141 (7%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
PP F K + F+ G I W +++ I ++++ + L
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTIS-SAVINVG 251
+ +V D+G + A N GK CSA L V+ PP F+ + S ++
Sbjct: 65 VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ----------APPRFIKKLEPSRIVKQD 114
Query: 252 QLARFDAKISATKPLDVYWLK 272
+ R++ KI + + V W K
Sbjct: 115 EHTRYECKIGGSPEIKVLWYK 135
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 39/93 (41%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
+PPVF KK P + E E G P + W ++ + S ++I + + + +
Sbjct: 191 EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSI 250
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
+ V D G + A N G C ++ ++
Sbjct: 251 HILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 146 FEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFA 205
+E + ARF + DG+P+PT+ W R+ +++S Q+ T KS + V D G ++
Sbjct: 27 YEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYS 86
Query: 206 VIAENRGGKAKCSANLVVE 224
V+ EN GK + L ++
Sbjct: 87 VVVENSEGKQEAEFTLTIQ 105
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 146 FEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFA 205
+E + ARF + DG+P+PT+ W R+ +++S Q+ T KS + V D G ++
Sbjct: 21 YEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYS 80
Query: 206 VIAENRGGKAKCSANLVVE 224
V+ EN GK + L ++
Sbjct: 81 VVVENSEGKQEAEFTLTIQ 99
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI--HTFSTK 188
A P F K++ + FE F G+P P I WF++ I+ D
Sbjct: 5 ATAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 64
Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGR 231
L ++D G + ++A N G+ C+ L+V+ Q GR
Sbjct: 65 CSLHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQAVNQRGR 107
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 152 RFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR 211
R+ G P P ++W R+ P+ S ++ + L ++ +EDSG++ +AEN+
Sbjct: 313 RWSCVASGKPRPAVRWLRDGQPLASQNRIEV----SGGELRFSKLVLEDSGMYQCVAENK 368
Query: 212 GGKAKCSANLVVE 224
G SA L V+
Sbjct: 369 HGTVYASAELTVQ 381
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 16/114 (14%)
Query: 159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 218
G+P+P IKW + D TS S++ +L ++ V ED G + AEN G+
Sbjct: 233 GNPVPQIKWRKLDGSQTSK------WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQ 286
Query: 219 ANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
+++ + P +L I+ ++G R+ S V WL+
Sbjct: 287 GRIIIHAQ----------PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLR 330
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 149 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA 208
+ A+ + G PLP IKW+R + S +++ + L + ED GV+ IA
Sbjct: 23 EAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIA 82
Query: 209 ENRGGKAKCSANLVVE 224
N G+ + S+ L+++
Sbjct: 83 TNEVGEVETSSKLLLQ 98
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 152 RFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQV 196
R V + G P+P + WF + +S + I + L+M+ V
Sbjct: 122 RLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNV 166
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 152 RFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR 211
R+ G P PT++W R P+ S ++ L ++ +EDSG++ +AEN+
Sbjct: 312 RWGCAAAGKPRPTVRWLRNGEPLASQNRVEV----LAGDLRFSKLSLEDSGMYQCVAENK 367
Query: 212 GGKAKCSANLVVE 224
G SA L V+
Sbjct: 368 HGTIYASAELAVQ 380
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 26/133 (19%)
Query: 145 AFEQDQARFEVEFDGDPLPTIKWFREDFPI-----TSSPDFQIHTFSTKSILIMRQVFME 199
A Q E G+P+P IKW + D + T+ P QI + S E
Sbjct: 218 ALVGQQVTLECFAFGNPVPRIKWRKVDGSLSPQWTTAEPTLQIPSVS-----------FE 266
Query: 200 DSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAK 259
D G + AEN G+ ++V+ + P +L IS ++G R+
Sbjct: 267 DEGTYECEAENSKGRDTVQGRIIVQAQ----------PEWLKVISDTEADIGSNLRWGCA 316
Query: 260 ISATKPLDVYWLK 272
+ V WL+
Sbjct: 317 AAGKPRPTVRWLR 329
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI--HTFSTKSIL 191
P F K++ + FE F G+P P I WF++ I+ D L
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSL 68
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQG 229
++D G + ++A N G+ C+ L+V+ G
Sbjct: 69 HTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITS-SPDFQIHTF-STK 188
A P F ++++ Q A + G P P +KW+R+ I + ++I F
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
LI+ V +D+ V+ V A N+GG +A+L VE
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE 97
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 7/130 (5%)
Query: 91 EHKGKIQERVVDASELDDDGYYAITERK----YYALSDLSEQKPAK--PPVFTKKIQPCR 144
E KG + ++ + DD Y + + L + PAK P + +
Sbjct: 56 EFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH 115
Query: 145 AFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ-IHTFSTKSILIMRQVFMEDSGV 203
A + ++ F G P P I W + I ++ +Q I T S S++ V +D+G
Sbjct: 116 ALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 204 FAVIAENRGG 213
+ V A+NR G
Sbjct: 176 YVVCAKNRFG 185
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITS-SPDFQIHTF-STK 188
A P F ++++ Q A + G P P +KW+R+ I + ++I F
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
LI+ V +D+ V+ V A N+GG +A+L VE
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE 97
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 7/130 (5%)
Query: 91 EHKGKIQERVVDASELDDDGYYAITERK----YYALSDLSEQKPAK--PPVFTKKIQPCR 144
E KG + ++ + DD Y + + L + PAK P + +
Sbjct: 56 EFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH 115
Query: 145 AFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ-IHTFSTKSILIMRQVFMEDSGV 203
A + ++ F G P P I W + I ++ +Q I T S S++ V +D+G
Sbjct: 116 ALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 204 FAVIAENRGG 213
+ V A+NR G
Sbjct: 176 YVVCAKNRFG 185
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 149 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA 208
++ R ++ G P P IKW++ P+ S+ HT +L + +V D+G + VI
Sbjct: 216 ERVRIPAKYLGYPPPEIKWYKNGIPLESN-----HTIKAGHVLTIMEVSERDTGNYTVIL 270
Query: 209 ENRGGKAKCS--ANLVVEEKRQGGRGGVVPP 237
N K K S +LVV Q G ++ P
Sbjct: 271 TNPISKEKQSHVVSLVVYVPPQIGEKSLISP 301
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 149 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA 208
++ R ++ G P P IKW++ P+ S+ HT +L + +V D+G + VI
Sbjct: 346 ERVRIPAKYLGYPPPEIKWYKNGIPLESN-----HTIKAGHVLTIMEVSERDTGNYTVIL 400
Query: 209 ENRGGKAKCS--ANLVVEEKRQGGRGGVVPP 237
N K K S +LVV Q G ++ P
Sbjct: 401 TNPISKEKQSHVVSLVVYVPPQIGEKSLISP 431
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 218
G+P P I WF+++ + D I L +R+V ED G++ A + G AK
Sbjct: 692 GNPPPQIMWFKDNETLVE--DSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVE 749
Query: 219 ANLVVE 224
A ++E
Sbjct: 750 AFFIIE 755
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITS-SPDFQIHTF-STKSIL 191
P F ++++ Q A + G P P +KW+R+ I + ++I F L
Sbjct: 3 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 62
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
I+ V +D+ V+ V A N+GG +A+L VE
Sbjct: 63 IIASVTDDDATVYQVRATNQGGSVSGTASLEVE 95
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 7/130 (5%)
Query: 91 EHKGKIQERVVDASELDDDGYYAITERK----YYALSDLSEQKPAK--PPVFTKKIQPCR 144
E KG + ++ + DD Y + + L + PAK P + +
Sbjct: 54 EFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH 113
Query: 145 AFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ-IHTFSTKSILIMRQVFMEDSGV 203
A + ++ F G P P I W + I ++ +Q I T S S++ V +D+G
Sbjct: 114 ALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 173
Query: 204 FAVIAENRGG 213
+ V A+NR G
Sbjct: 174 YVVCAKNRFG 183
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIM 193
P F+ ++ C E + G P+P I W PI + + + + L +
Sbjct: 12 PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA---RSTCEAGVAELHI 68
Query: 194 RQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
+ ED G + +AEN G+ CSA + V
Sbjct: 69 QDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 37/91 (40%)
Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIM 193
PV +Q A+F V+ G+P PT W ++ IT +++ L +
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEI 66
Query: 194 RQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
+ DSG++ +N G S L ++
Sbjct: 67 HKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIM 193
P + + I ++ +E + +G P PT +W + P+ + QI + L +
Sbjct: 295 PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE----QGTLNI 350
Query: 194 RQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
V + D+G++ +AEN+ G SA L V
Sbjct: 351 TIVNLSDAGMYQCVAENKHGVIFSSAELSV 380
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 130 PAKPPVFTKKIQPCRAF-----EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHT 184
P PVF + +P E+ + + E G+P P I+W + DF+ ++
Sbjct: 1 PGSGPVFVQ--EPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFR-YS 57
Query: 185 FSTKSILIMRQVFMEDSGVFAVIAENRGG 213
S+LI +D+G + IA N G
Sbjct: 58 VVDGSLLINNPNKTQDAGTYQCIATNSFG 86
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 159 GDPLPTIKWFREDF-PITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGK 214
G+P+PTI W R D PI + + IL + ED+G + +AEN GK
Sbjct: 230 GNPVPTILWRRADGKPIAR----KARRHKSNGILEIPNFQQEDAGSYECVAENSRGK 282
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIM 193
P + + I ++ +E + +G P PT +W + P+ + QI + L +
Sbjct: 296 PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE----QGTLNI 351
Query: 194 RQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
V + D+G++ +AEN+ G SA L V
Sbjct: 352 TIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 130 PAKPPVFTKKIQPCRAF-----EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHT 184
P PVF + +P E+ + + E G+P P I+W + DF+ ++
Sbjct: 2 PGSGPVFVQ--EPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFR-YS 58
Query: 185 FSTKSILIMRQVFMEDSGVFAVIAENRGG 213
S+LI +D+G + IA N G
Sbjct: 59 VVDGSLLINNPNKTQDAGTYQCIATNSFG 87
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 159 GDPLPTIKWFREDF-PITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGK 214
G+P+PTI W R D PI + + IL + ED+G + +AEN GK
Sbjct: 231 GNPVPTILWRRADGKPIAR----KARRHKSNGILEIPNFQQEDAGSYECVAENSRGK 283
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 147 EQDQARFEVEFDGDPLPTIKWFREDFPI--TSSPDFQIHTFSTKSILIMRQVFMEDSGVF 204
E R + + G P P + W + P+ S+ + S LI+ V D+G++
Sbjct: 23 EGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHS-LIIEPVTSRDAGIY 81
Query: 205 AVIAENRGGKAKCSANLVVEEKRQG 229
IA NR G+ S LVV K G
Sbjct: 82 TCIATNRAGQNSFSLELVVAAKESG 106
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 158 DGDPLPTIKWFREDFPI-TSSPDFQIHTFSTKSI-LIMRQVFMEDSGVFAVIAENRGGKA 215
DG P PT+ W ++ PI D + H FS S L +R V D + IAEN+ G+
Sbjct: 221 DGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQ 280
Query: 216 KCSANLVV 223
S +L V
Sbjct: 281 DASIHLKV 288
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD-FQIHTFSTKSI 190
+ P+F K Q + E D + E + P P + W R + + + D ++ +T +
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73
Query: 191 -LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
L+++ V +D+G + V A N G C+ L V +
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 151 ARFEVEFDGDPLPTIKWFREDFPITS-SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE 209
A + + GDPLP I W +E F P I T I +R + D+G + +A
Sbjct: 26 ALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLR---ISDTGTYTCVAT 82
Query: 210 NRGGKAKCSANLVVEE 225
+ G+ SA L V E
Sbjct: 83 SSSGETSWSAVLDVTE 98
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 158 DGDPLPTIKWFREDFPITSSPDFQIHTFSTK-SILIMRQVFMEDSGVFAVIAENRGGKAK 216
DG P PT+ W ++ PI + + ++F+ S LI+++V D + IAEN+ G+
Sbjct: 38 DGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICIAENKAGEQD 97
Query: 217 CSANLVV 223
+ +L V
Sbjct: 98 ATIHLKV 104
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI-- 190
PP F + + E R + + G P P + W+ + S D S K +
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSD-DLHKMIVSEKGLHS 63
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
LI V D+G +A +A+NR G+A + L V K
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 232 GGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYW 270
G + PP F+ + I+ G+ R D K+S DV W
Sbjct: 1 GAMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSW 39
>pdb|2K1M|A Chain A, 3d Nmr Structure Of Domain Cc0 Of Cardiac Myosin Binding
Protein C (Mybpc)
Length = 95
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 130 PAKPPV--FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST 187
P K PV F+KK + A FE E + + ++W R I++S + + T T
Sbjct: 3 PGKKPVSAFSKKPRSVEVAAGSPAVFEAETERAGV-KVRWQRGGSDISASNKYGLATEGT 61
Query: 188 KSILIMRQVFMEDSGVFAVIA 208
+ L +R+V D G +AVIA
Sbjct: 62 RHTLTVREVGPADQGSYAVIA 82
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 218
G P+PTI W R+D + S+ D +I +L +R + D+G + IA G+A S
Sbjct: 34 GSPVPTILW-RKDGVLVSTQDSRIKQLE-NGVLQIRYAKLGDTGRYTCIASTPSGEATWS 91
Query: 219 ANLVVEE 225
A + V+E
Sbjct: 92 AYIEVQE 98
>pdb|1TIT|A Chain A, Titin, Ig Repeat 27, Nmr, Minimized Average Structure
pdb|1TIU|A Chain A, Titin, Ig Repeat 27, Nmr, 24 Structures
Length = 98
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 138 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVF 197
K + F + A FE+E +P +W + P+T+SPD +I K ILI+
Sbjct: 15 KPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQ 73
Query: 198 MEDSGVFAVIAENRGGKAKCSANLVVEE 225
+ +G + A N AK +ANL V+E
Sbjct: 74 LGMTGEVSFQAAN----AKSAANLKVKE 97
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 32/78 (41%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
PP F ++ +P R +A + G+P P + W + + +S + L+
Sbjct: 14 PPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLL 73
Query: 193 MRQVFMEDSGVFAVIAEN 210
+ D+GV+ A N
Sbjct: 74 LTAALPTDAGVYVCRARN 91
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF--STKSIL 191
PVF K + A F + G+P P I W ++ + SS F++ F S+L
Sbjct: 7 PVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKV-SSQRFEVIEFDDGAGSVL 65
Query: 192 IMRQVFME-DSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250
++ + ++ D ++ A N G+ SA L V E+ Q +PP F + + V
Sbjct: 66 RIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQ------LPPGFPSIDMGPQLKV 119
Query: 251 GQLARFDAKISA 262
+ AR + A
Sbjct: 120 VEKARTATMLCA 131
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 159 GDPLPTIKWFREDFPI-TSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG-KAK 216
G+P P I WF++ P+ ++ + +I + ++ I D G + +A N G +
Sbjct: 134 GNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQI-ESSEESDQGKYECVATNSAGTRYS 192
Query: 217 CSANLVVEEKRQGG 230
ANL V +R G
Sbjct: 193 APANLYVRVRRVAG 206
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 12/128 (9%)
Query: 149 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS---ILIMRQVFMEDSGVFA 205
+ +F G+P+PT++W + + +I + ++ LIM V D G +
Sbjct: 35 NTVKFRCPAGGNPMPTMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92
Query: 206 VIAENRGGKAKCSANL-VVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATK 264
+ EN G + +L VVE R P+ +T+ VG F K+ +
Sbjct: 93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTV------VGGDVEFVCKVYSDA 146
Query: 265 PLDVYWLK 272
+ W+K
Sbjct: 147 QPHIQWIK 154
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 62/170 (36%), Gaps = 28/170 (16%)
Query: 81 KITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSDLSEQKPA--------- 131
++T E + G ++ ++D++ L D R+ + L + + Q+P
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRL-NFNRQQPTCATPEFVQG 365
Query: 132 ----------KPPVFT--------KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFP 173
P FT +K Q E +F DGDP P I W
Sbjct: 366 KEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKH 425
Query: 174 ITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
+ S+ T L +R ++D+G + IA N GG A+L V
Sbjct: 426 LVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 138 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS---ILIMR 194
K++ AF + +F G+P+PT++W + + +I + ++ LIM
Sbjct: 26 KRLHAVPAF--NTVKFRCPAGGNPMPTMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIME 81
Query: 195 QVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
V D G + + EN G + +L V E+
Sbjct: 82 SVVPSDKGNYTCVVENEYGSINHTYHLDVVER 113
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 159 GDPLPTIKWFREDFPI-TSSPDFQIHTFSTKSI--LIMRQVFMEDSGVFAVIAENRGG-K 214
G+P P I WF++ P+ TS+ + +I ++SI L + Q D G + +A N G +
Sbjct: 134 GNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTR 193
Query: 215 AKCSANLVV 223
ANL V
Sbjct: 194 YSAPANLYV 202
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 149 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS---ILIMRQVFMEDSGVFA 205
+ +F G+P+PT++W + + +I + ++ LIM V D G +
Sbjct: 25 NTVKFRCPAGGNPMPTMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKGNYT 82
Query: 206 VIAENRGGKAKCSANL-VVEEKRQ 228
+ EN G + +L VVE R
Sbjct: 83 CVVENEYGSINHTYHLDVVERSRH 106
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 149 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS---ILIMRQVFMEDSGVFA 205
+ +F G+P+PT++W + + +I + ++ LIM V D G +
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKGNYT 84
Query: 206 VIAENRGGKAKCSANL-VVEEKRQ 228
+ EN G + +L VVE R
Sbjct: 85 CVVENEYGSINHTYHLDVVERSRH 108
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like Domain(2826-2915)
From Human Obscurin
Length = 103
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 147 EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAV 206
E + R E+ G P + W ++ I S + + T ++L++R ++D+G +
Sbjct: 24 EDVELRCELSRAGTP---VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTC 80
Query: 207 IAENRGGKAKCSANLVVEEKRQG 229
E +K +A+L VEEK G
Sbjct: 81 EVE----ASKSTASLHVEEKASG 99
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 218
G+P+P I+W + P+ S+ + ++ ++L + + +ED G++ AEN GK K
Sbjct: 139 GNPVPDIRWRKVLEPMPSTAEIS----TSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQ 194
Query: 219 ANLVVE 224
A + V+
Sbjct: 195 ARIYVQ 200
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 10/110 (9%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
PPVF KK A F + GDP P + W ++ + S F+ F + +
Sbjct: 6 PPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAV 64
Query: 193 MRQVFM---EDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSF 239
+R + D ++ +A+N G+ A L V + Q +PP F
Sbjct: 65 LRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQ------LPPGF 108
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 20/139 (14%)
Query: 152 RFEVEFDGDPLPTIKWFR--EDFPITSSPDFQIHTFSTKSI---LIMRQVFMEDSGVFAV 206
+F+ G P PT++W + ++F PD +I + + +IM V D G +
Sbjct: 35 KFKCPSSGTPQPTLRWLKNGKEF----KPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 90
Query: 207 IAENRGGKAKCSANLVVEEK---RQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT 263
I EN G + L V E+ R + G+ ++ + +G F K+ +
Sbjct: 91 IVENEYGSINHTYQLDVVERSPHRPILQAGLP--------ANKTVALGSNVEFMCKVYSD 142
Query: 264 KPLDVYWLKVSSLSDVKRG 282
+ WLK ++ K G
Sbjct: 143 PQPHIQWLKHIEVNGSKIG 161
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 20/139 (14%)
Query: 152 RFEVEFDGDPLPTIKWFR--EDFPITSSPDFQIHTFSTKSI---LIMRQVFMEDSGVFAV 206
+F+ G P PT++W + ++F PD +I + + +IM V D G +
Sbjct: 36 KFKCPSSGTPQPTLRWLKNGKEF----KPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 91
Query: 207 IAENRGGKAKCSANLVVEEK---RQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT 263
I EN G + L V E+ R + G+ ++ + +G F K+ +
Sbjct: 92 IVENEYGSINHTYQLDVVERSPHRPILQAGLP--------ANKTVALGSNVEFMCKVYSD 143
Query: 264 KPLDVYWLKVSSLSDVKRG 282
+ WLK ++ K G
Sbjct: 144 PQPHIQWLKHIEVNGSKIG 162
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 20/139 (14%)
Query: 152 RFEVEFDGDPLPTIKWFR--EDFPITSSPDFQIHTFSTKSI---LIMRQVFMEDSGVFAV 206
+F+ G P PT++W + ++F PD +I + + +IM V D G +
Sbjct: 35 KFKCPSSGTPNPTLRWLKNGKEF----KPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 90
Query: 207 IAENRGGKAKCSANLVVEEK---RQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT 263
I EN G + L V E+ R + G+ ++ + +G F K+ +
Sbjct: 91 IVENEYGSINHTYQLDVVERSPHRPILQAGLP--------ANKTVALGSNVEFMCKVYSD 142
Query: 264 KPLDVYWLKVSSLSDVKRG 282
+ WLK ++ K G
Sbjct: 143 PQPHIQWLKHIEVNGSKIG 161
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 149 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS---ILIMRQVFMEDSGVFA 205
+ +F G+P+PT++W + + +I + ++ LIM V D G +
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKGNYT 84
Query: 206 VIAENRGGKAKCSANLVVEEK 226
+ EN G + +L V E+
Sbjct: 85 CVVENEYGSINHTYHLDVVER 105
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 149 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS---ILIMRQVFMEDSGVFA 205
+ +F G+P+PT++W + + +I + ++ LIM V D G +
Sbjct: 26 NTVKFRCPAGGNPMPTMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKGNYT 83
Query: 206 VIAENRGGKAKCSANLVVEEK 226
+ EN G + +L V E+
Sbjct: 84 CVVENEYGSINHTYHLDVVER 104
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 149 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS---ILIMRQVFMEDSGVFA 205
+ +F G+P+PT++W + + +I + ++ LIM V D G +
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKGNYT 84
Query: 206 VIAENRGGKAKCSANLVVEEK 226
+ EN G + +L V E+
Sbjct: 85 CVVENEYGSINHTYHLDVVER 105
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 149 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA 208
++ F G P P I WFR I + + + +T+ L +R + D G + A
Sbjct: 20 EEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRA 77
Query: 209 ENRGGKAKCSANLVV 223
N+ G+ + A L V
Sbjct: 78 TNKAGEDEKQAFLQV 92
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 146 FEQDQARFEVEFDGDPLPTIKWFR--EDFPITS---SPDFQIHTFSTK--SILIMRQVFM 198
+E Q + +G+P+P I W R + F T S D +I S L ++ V +
Sbjct: 107 YENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKL 166
Query: 199 EDSGVFAVIAENRGGKAKCSANLVVE 224
DSG + A +R G + S L +E
Sbjct: 167 SDSGRYDCEAASRIGGHQKSMYLDIE 192
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIH--TFSTKSILIMRQVFM---EDSGVFA 205
A + +G P PTI+WF++ P++++ + + H F ++ R + +D G +
Sbjct: 27 ATLNCKVEGKPEPTIEWFKDGEPVSTN-EKKSHRVQFKDGALFFYRTMQGKKEQDGGEYW 85
Query: 206 VIAENRGGKA 215
+A+NR G+A
Sbjct: 86 CVAKNRVGQA 95
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIH--TFSTKSILIMRQVFM---EDSGVFA 205
A + +G P PTI+WF++ P++++ + + H F ++ R + +D G +
Sbjct: 27 ATLNCKVEGKPEPTIEWFKDGEPVSTN-EKKSHRVQFKDGALFFYRTMQGKKEQDGGEYW 85
Query: 206 VIAENRGGKA 215
+A+NR G+A
Sbjct: 86 CVAKNRVGQA 95
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIM 193
P T +++ R RF + P +KW+ + S +IH +T +L +
Sbjct: 9 PRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESS--KIHYTNTSGVLTL 66
Query: 194 R--QVFMEDSGVFAVIAENRGGKAKCSANLVV 223
+DSG + + N G+A A L V
Sbjct: 67 EILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98
>pdb|2YXM|A Chain A, Crystal Structure Of I-Set Domain Of Human Myosin Binding
Proteinc
pdb|2YUV|A Chain A, Solution Structure Of 2nd Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 136 FTKKIQPCRAFEQDQA---RFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
F K + P A++ D+ RF VE DP +KW++ I S + + IL
Sbjct: 10 FAKILDP--AYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILF 66
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
+ M D + V A G KCS L V
Sbjct: 67 INNCQMTDDSEYYVTA----GDEKCSTELFV 93
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 159 GDPLPTIKWFREDFPITSSPDFQIHTFST-----KSILIMRQVFMEDSGVFAVIAENRGG 213
G+P P I W + I ++ +Q+ + T S L + V D G++ IA+++ G
Sbjct: 455 GNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVG 514
Query: 214 KAKCSANLVV 223
A+ SA L V
Sbjct: 515 VAEHSAKLNV 524
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 210
A F ++ G+P+ T+ W ++ I S +S+L + V ED G++ N
Sbjct: 361 AVFTCQYTGNPIKTVSWMKDGKAIGHS----------ESVLRIESVKKEDKGMYQCFVRN 410
Query: 211 RGGKAKCSANLVVEEKRQGGR 231
A+ SA L + GGR
Sbjct: 411 DRESAEASAEL-----KLGGR 426
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF---STKS 189
P +F ++IQ + A F V G P P +W++ I S +I+ +
Sbjct: 6 PKIF-ERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSD--RIYWYWPEDNVC 62
Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
L++R V EDS V A N G+ A L+V+ K
Sbjct: 63 ELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 15/146 (10%)
Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF--STKSIL 191
PVF K + A F + G+P P I W ++ + SS F++ F S+L
Sbjct: 8 PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKV-SSQRFEVIEFDDGAGSVL 66
Query: 192 IMRQVFME-DSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSA---- 246
++ + ++ D ++ A N G+ SA L V E+ Q PS TI
Sbjct: 67 RIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQ-------LPSGFPTIDMGPQLK 119
Query: 247 VINVGQLARFDAKISATKPLDVYWLK 272
V+ G+ A ++ W K
Sbjct: 120 VVEKGRTATMLCAAGGNPDPEISWFK 145
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
PP F + +P R +A + G+P P + W + + +S + L+
Sbjct: 14 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLL 73
Query: 193 MRQVFMEDSGVFAVIAEN 210
+ D+GV+ A N
Sbjct: 74 LTAALPTDAGVYVCRARN 91
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 145 AFEQDQARFE--VEF--DGDPLPTIKWFREDFPITSSPDFQIHTFS----TKSILIMRQV 196
+ E+ + R E +EF G+P PT+ W P+ S + + ++ L+ +
Sbjct: 13 SLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKP 72
Query: 197 FMEDSGVFAVIAENRGGKAKCSAN 220
++G + +IA+N G A + N
Sbjct: 73 THYNNGNYTLIAKNPLGTANQTIN 96
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 149 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA 208
++ F G P P I WFR I + + + +T+ L +R + D G + A
Sbjct: 210 EEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRA 267
Query: 209 ENRGGK 214
N+ G+
Sbjct: 268 TNKAGE 273
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
Query: 128 QKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST 187
+K K PV T ++ A ++ A F + P P I W R I D +
Sbjct: 2 EKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLF-DTRYSIREN 60
Query: 188 KSILIMRQVFMEDSGVFAVIAENRGGKA--KCSA 219
+L + V D G++ A N G A C A
Sbjct: 61 GQLLTILSVEDSDDGIYCCTANNGVGGAVESCGA 94
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
PP F + +P R +A + G+P P + W + + +S + L+
Sbjct: 13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLL 72
Query: 193 MRQVFMEDSGVFAVIAEN 210
+ D+GV+ A N
Sbjct: 73 LTAALPTDAGVYVCRARN 90
>pdb|2RQ8|A Chain A, Solution Nmr Structure Of Titin I27 Domain Mutant
Length = 98
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 144 RAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGV 203
F + A FE+E +P +W + P+ +SPD +I K ILI+ + +G
Sbjct: 13 EVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGE 71
Query: 204 FAVIAENRGGKAKCSANLVVEE 225
+ A N K +ANL V+E
Sbjct: 72 VSFQAAN----TKSAANLKVKE 89
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 149 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS---ILIMRQVFMEDSGVFA 205
+ +F G+P+PT++W + + +I + ++ LIM V D G +
Sbjct: 29 NTVKFRCPAGGNPMPTMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKGNYT 86
Query: 206 VIAENRGGKAKCSANLVV 223
+ EN G + +L V
Sbjct: 87 CVVENEYGSINHTYHLDV 104
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 149 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA 208
++ F G P P I WFR I + + + +T+ L +R + D G + A
Sbjct: 114 EEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRA 171
Query: 209 ENRGGKAKCSANLVV 223
N+ G+ + A L V
Sbjct: 172 TNKAGEDEKQAFLQV 186
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 149 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS---ILIMRQVFMEDSGVFA 205
+ +F G+P+PT++W + + +I + ++ LIM V D G +
Sbjct: 24 NTVKFRCPAGGNPMPTMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKGNYT 81
Query: 206 VIAENRGGKAKCSANLVV 223
+ EN G + +L V
Sbjct: 82 CVVENEYGSINHTYHLDV 99
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 149 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS---ILIMRQVFMEDSGVFA 205
+ +F G+P+PT++W + + +I + ++ LIM V D G +
Sbjct: 28 NTVKFRCPAGGNPMPTMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKGNYT 85
Query: 206 VIAENRGGKAKCSANLVV 223
+ EN G + +L V
Sbjct: 86 CVVENEYGSINHTYHLDV 103
>pdb|1WAA|E Chain E, Ig27 Protein Domain
Length = 93
Score = 31.6 bits (70), Expect = 0.49, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 138 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVF 197
K + F + A FE+E +P +W + P+ +SPD +I K ILI+
Sbjct: 10 KPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEEGKKHILILHNCQ 68
Query: 198 MEDSGVFAVIAENRGGKAKCSANLVVEE 225
+ +G + A N K +ANL V+E
Sbjct: 69 LGMTGEVSFQAAN----TKSAANLKVKE 92
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 210
A F ++ G+P+ T+ W ++ I S +S+L + V ED G++ N
Sbjct: 328 AVFTCQYTGNPIKTVSWMKDGKAIGHS----------ESVLRIESVKKEDKGMYQCFVRN 377
Query: 211 RGGKAKCSANL 221
A+ SA L
Sbjct: 378 DRESAEASAEL 388
>pdb|1WAA|A Chain A, Ig27 Protein Domain
pdb|1WAA|B Chain B, Ig27 Protein Domain
pdb|1WAA|C Chain C, Ig27 Protein Domain
pdb|1WAA|D Chain D, Ig27 Protein Domain
Length = 93
Score = 31.6 bits (70), Expect = 0.51, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 138 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVF 197
K + F + A FE+E +P +W + P+ +SPD +I K ILI+
Sbjct: 10 KPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQ 68
Query: 198 MEDSGVFAVIAENRGGKAKCSANLVVEE 225
+ +G + A N K +ANL V+E
Sbjct: 69 LGMTGEVSFQAAN----TKSAANLKVKE 92
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 210
A F ++ G+P+ T+ W ++ I S +S+L + V ED G++ N
Sbjct: 325 AVFTCQYTGNPIKTVSWMKDGKAIGHS----------ESVLRIESVKKEDKGMYQCFVRN 374
Query: 211 RGGKAKCSANL 221
A+ SA L
Sbjct: 375 DRESAEASAEL 385
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 210
A F ++ G+P+ T+ W ++ I S +S+L + V ED G++ N
Sbjct: 331 AVFTCQYTGNPIKTVSWMKDGKAIGHS----------ESVLRIESVKKEDKGMYQCFVRN 380
Query: 211 RGGKAKCSANL 221
A+ SA L
Sbjct: 381 DRESAEASAEL 391
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 5/94 (5%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
PP F + E + G+P P + W R P+ PD + + L
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPV--RPDQRRFAEEAEGGLC 62
Query: 193 MRQVFME---DSGVFAVIAENRGGKAKCSANLVV 223
++ D+G + A N G +C A L V
Sbjct: 63 RLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 22/143 (15%)
Query: 149 DQARFEVEFDGDPLPTIKW------FREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSG 202
+ RF G+P P+I W FR + I I + L+M V D G
Sbjct: 139 NTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG-----IKLRHQQWSLVMESVVPSDRG 193
Query: 203 VFAVIAENRGGKAKCSANLVVEEK---RQGGRGGVVPPSFLTTISSAVINVGQLARFDAK 259
+ + EN+ G + + L V E+ R + G+ P+ T + +G F K
Sbjct: 194 NYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGL--PANQTAV------LGSDVEFHCK 245
Query: 260 ISATKPLDVYWLKVSSLSDVKRG 282
+ + + WLK ++ K G
Sbjct: 246 VYSDAQPHIQWLKHVEVNGSKVG 268
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 22/143 (15%)
Query: 149 DQARFEVEFDGDPLPTIKW------FREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSG 202
+ RF G+P P+I W FR + I I + L+M V D G
Sbjct: 31 NTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG-----IKLRHQQWSLVMESVVPSDRG 85
Query: 203 VFAVIAENRGGKAKCSANLVVEEK---RQGGRGGVVPPSFLTTISSAVINVGQLARFDAK 259
+ + EN+ G + + L V E+ R + G+ P+ T + +G F K
Sbjct: 86 NYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGL--PANQTAV------LGSDVEFHCK 137
Query: 260 ISATKPLDVYWLKVSSLSDVKRG 282
+ + + WLK ++ K G
Sbjct: 138 VYSDAQPHIQWLKHVEVNGSKVG 160
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 131 AKPPVFTKKIQPCRAFEQ-------DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIH 183
A+PP KI+ R Q +Q V F G P P + W + P+ +S +
Sbjct: 19 AEPP----KIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTS-RVHVR 73
Query: 184 TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
T ++ +RQ DSG + + + K + + V EK
Sbjct: 74 TSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 242 TISSAVINVGQLARFDAKISATKPLDVYWLKVS 274
T+SS + VGQ R+D I A P+ YW V+
Sbjct: 302 TVSSLFLAVGQ--RYDVTIDANSPVGNYWFNVT 332
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 218
G+P P I WF+++ + D I L +R+V ED G++ A + G AK
Sbjct: 36 GNPPPQIMWFKDNETLVE--DSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVE 93
Query: 219 ANLVVE 224
A ++E
Sbjct: 94 AFFIIE 99
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 159 GDPLPTIKWFREDFPI-TSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG-KAK 216
G+P P I WF++ P+ S+ + +I + ++ I D G + +A N G +
Sbjct: 134 GNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQI-ESSEETDQGKYECVATNSAGVRYS 192
Query: 217 CSANLVVEEKRQGG 230
ANL V +R G
Sbjct: 193 SPANLYVRVRRVAG 206
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
+PP F K+ + A F + GDP P + W ++ + S F+ F +
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGA 63
Query: 192 IMRQVFM---EDSGVFAVIAENRGGKAKCSANLVV 223
++R + D V+ +A+N G+ A L V
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTV 98
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 1/125 (0%)
Query: 99 RVVDASELDDDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFD 158
R+ + SE D Y+ + K ++ + P + + + + R +
Sbjct: 278 RITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRAN 337
Query: 159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 218
G+P PT++W P+ S+P + +I I R + V+ N G +
Sbjct: 338 GNPKPTVQWMVNGEPLQSAPPNPNREVAGDTI-IFRDTQISSRAVYQCNTSNEHGYLLAN 396
Query: 219 ANLVV 223
A + V
Sbjct: 397 AFVSV 401
>pdb|1WAA|F Chain F, Ig27 Protein Domain
Length = 93
Score = 30.0 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 138 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVF 197
K + F + A FE+E +P +W + P+ +SPD +I K ILI+
Sbjct: 10 KPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQ 68
Query: 198 MEDSGVFAVIAENRGGKAKCSANLVVEE 225
+ +G + A + K +ANL V+E
Sbjct: 69 LGMTGEVSFQA----AQTKSAANLKVKE 92
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 3/118 (2%)
Query: 161 PLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN 220
P + W + D T + + ++ L + EDSG + N K S
Sbjct: 53 PRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIE 112
Query: 221 LVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSD 278
L V E + P LT +S V+ L+ F + K + W K S L D
Sbjct: 113 LRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVK---IQWYKDSLLLD 167
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Query: 167 WFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
W R DF + + L + ++DSGVF A N G A + L V EK
Sbjct: 241 WHRGDF-----------NYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 17/133 (12%)
Query: 145 AFEQDQARFEVEFDGDPLPTIKWFR--EDFPITS---SPDFQIHTFSTK--SILIMRQVF 197
+E Q + +G+P+P I W R + F T S D +I S L ++ V
Sbjct: 12 TYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVK 71
Query: 198 MEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFD 257
+ DSG + A +R G + S L +E P F++ + G
Sbjct: 72 LSDSGRYDCEAASRIGGHQKSMYLDIE----------YAPKFISNQTIYYSWEGNPINIS 121
Query: 258 AKISATKPLDVYW 270
+ + P ++W
Sbjct: 122 CDVKSNPPASIHW 134
>pdb|1WIT|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, Minimized Average Structure
pdb|1WIU|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, 30 Structures
Length = 93
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 132 KPPVFT--KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS 189
KP + T +KI+ F + EV+F G P PT W D +P+ + S+ +
Sbjct: 2 KPKILTASRKIKIKAGFTHN---LEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
+ DSG + + +N G+ + ++V+
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 159 GDPLPTIKWFREDFPI-TSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG-KAK 216
G+P P I WF++ P+ S+ + +I + ++ I D G + +A N G +
Sbjct: 134 GNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQI-ESSEETDQGKYECVATNSAGVRYS 192
Query: 217 CSANLVVEEKRQGGRGGVVPPS 238
ANL V + R ++P S
Sbjct: 193 SPANLYVRVQNVAPRFSILPMS 214
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
+PP F K+ + A F + GDP P + W ++ + S F+ F +
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGA 63
Query: 192 IMRQVFM---EDSGVFAVIAENRGGKAKCSANLVVEEKRQ 228
++R + D V+ +A+N G+ A L V + Q
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQ 103
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 27/157 (17%)
Query: 93 KGKIQERVVDASELDDDGYYA--ITERKYYALSDLSEQKPAKPP---------VFTKKIQ 141
G E + +A + D G+Y + + S S+ P V K+Q
Sbjct: 61 NGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQ 120
Query: 142 PC------RAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQ 195
C + + G P+P +WF+ + P+T TK + ++
Sbjct: 121 ICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTH---------ETKKLYMVPY 171
Query: 196 VFMEDSGVFAV-IAENRGGKAKCSANLVVEEKRQGGR 231
V +E G + + +R + ++++E G
Sbjct: 172 VDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGH 208
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
+PP F K+ + A F + GDP P + W ++ + S F+ F +
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGA 63
Query: 192 IMRQVFM---EDSGVFAVIAENRGGKAKCSANLVV 223
++R + D V+ +A+N G+ A L V
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTV 98
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 151 ARFEVEFDGDPLPTIKWFREDFPI-TSSPDFQIH--TFSTKSILIMRQVF----MEDSGV 203
A + +G P PTI+W++ + T D + H + S+ +R V D GV
Sbjct: 27 ATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV 86
Query: 204 FAVIAENRGGKA 215
+ +A N G+A
Sbjct: 87 YVCVARNYLGEA 98
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 17/132 (12%)
Query: 146 FEQDQARFEVEFDGDPLPTIKWFR--EDFPITS---SPDFQIHTFSTK--SILIMRQVFM 198
+E Q + +G+P+P I W R + F T S D +I S L ++ V +
Sbjct: 13 YENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKL 72
Query: 199 EDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDA 258
DSG + A +R G + S L +E P F++ + G
Sbjct: 73 SDSGRYDCEAASRIGGHQKSMYLDIE----------YAPKFISNQTIYYSWEGNPINISC 122
Query: 259 KISATKPLDVYW 270
+ + P ++W
Sbjct: 123 DVKSNPPASIHW 134
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 151 ARFEVEFDGDPLPTIKWFREDFPI-TSSPDFQIH--TFSTKSILIMRQVF----MEDSGV 203
A + +G P PTI+W++ + T D + H + S+ +R V D GV
Sbjct: 27 ATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV 86
Query: 204 FAVIAENRGGKA 215
+ +A N G+A
Sbjct: 87 YVCVARNYLGEA 98
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 171 DFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
+ P+ S DFQ + + L + V +D+G+++ +A N G + N V E
Sbjct: 229 EIPLNS--DFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE 281
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 171 DFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
+ P+ S DFQ + + L + V +D+G+++ +A N G + N V E
Sbjct: 229 EIPLNS--DFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE 281
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
Length = 91
Score = 27.7 bits (60), Expect = 8.0, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVF 204
G P+P +WF+ + P+T TK + ++ V +E G +
Sbjct: 29 GSPIPHYQWFKNELPLTH---------ETKKLYMVPYVDLEHQGTY 65
>pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|B Chain B, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|C Chain C, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|D Chain D, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|E Chain E, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|F Chain F, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|G Chain G, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|H Chain H, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7O|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|B Chain B, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|C Chain C, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|D Chain D, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|E Chain E, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|F Chain F, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|G Chain G, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|H Chain H, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
Length = 399
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 95 KIQER-VVDASELDDDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPC-RAFEQDQAR 152
K QER +++ L+ DGYY I +K L LS+ K K +F P R +++D+ +
Sbjct: 131 KNQERKIIECELLEKDGYYTIDFQK---LEKLSKDKNNKALLFCSPHNPVGRVWKKDELQ 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,029,159
Number of Sequences: 62578
Number of extensions: 319986
Number of successful extensions: 761
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 163
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)