Query psy14060
Match_columns 283
No_of_seqs 196 out of 2413
Neff 10.6
Searched_HMMs 46136
Date Fri Aug 16 18:33:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 9.4E-31 2E-35 235.3 23.9 244 16-281 304-563 (1051)
2 KOG3513|consensus 100.0 1.5E-28 3.2E-33 221.3 22.6 243 19-277 206-467 (1051)
3 KOG4194|consensus 99.9 3.3E-26 7.1E-31 193.4 13.5 172 96-279 573-750 (873)
4 KOG4221|consensus 99.9 2.2E-24 4.8E-29 194.3 21.4 240 20-279 115-371 (1381)
5 PHA02785 IL-beta-binding prote 99.9 2.5E-22 5.4E-27 167.4 20.4 206 60-279 38-266 (326)
6 KOG4222|consensus 99.9 1.6E-22 3.6E-27 181.4 14.0 236 20-276 106-355 (1281)
7 KOG4194|consensus 99.8 3.3E-20 7.3E-25 157.4 15.6 196 21-225 589-797 (873)
8 KOG4222|consensus 99.8 5.5E-21 1.2E-25 171.7 11.1 246 21-279 202-463 (1281)
9 KOG4221|consensus 99.8 8.6E-20 1.9E-24 165.1 14.9 253 18-277 205-471 (1381)
10 PHA02785 IL-beta-binding prote 99.8 9.6E-18 2.1E-22 139.9 22.6 188 20-214 96-317 (326)
11 PHA02826 IL-1 receptor-like pr 99.8 9.2E-18 2E-22 132.0 16.4 109 96-212 97-211 (227)
12 cd05762 Ig8_MLCK Eighth immuno 99.8 1.8E-17 3.9E-22 113.6 13.8 93 134-226 1-93 (98)
13 cd05747 Ig5_Titin_like M5, fif 99.7 6.5E-16 1.4E-20 105.0 12.9 90 132-221 2-91 (92)
14 cd05851 Ig3_Contactin-1 Third 99.7 3.8E-16 8.2E-21 105.0 10.9 87 133-223 1-87 (88)
15 PF07679 I-set: Immunoglobulin 99.7 1.7E-15 3.8E-20 102.6 13.0 90 134-223 1-90 (90)
16 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 3.6E-15 7.8E-20 99.6 12.7 82 142-223 4-86 (86)
17 cd05737 Ig_Myomesin_like_C C-t 99.7 3.3E-15 7.2E-20 101.4 12.5 84 140-223 8-92 (92)
18 cd05892 Ig_Myotilin_C C-termin 99.6 3.5E-15 7.6E-20 96.6 10.3 73 151-223 1-75 (75)
19 PHA02826 IL-1 receptor-like pr 99.6 5.2E-15 1.1E-19 116.4 13.2 124 141-280 30-178 (227)
20 cd04972 Ig_TrkABC_d4 Fourth do 99.6 1.1E-14 2.5E-19 98.4 12.8 85 139-223 6-90 (90)
21 cd05852 Ig5_Contactin-1 Fifth 99.6 3.1E-15 6.6E-20 96.6 9.1 73 148-223 1-73 (73)
22 cd04975 Ig4_SCFR_like Fourth i 99.6 8.5E-15 1.8E-19 100.5 11.7 84 141-224 11-100 (101)
23 cd05748 Ig_Titin_like Immunogl 99.6 1.2E-14 2.6E-19 94.5 11.7 74 150-223 1-74 (74)
24 cd05745 Ig3_Peroxidasin Third 99.6 4.4E-15 9.6E-20 96.5 9.2 74 147-223 1-74 (74)
25 cd05869 Ig5_NCAM-1 Fifth immun 99.6 2E-14 4.3E-19 98.6 12.9 91 133-223 2-97 (97)
26 cd05728 Ig4_Contactin-2-like F 99.6 8.1E-15 1.8E-19 97.9 10.1 84 136-223 2-85 (85)
27 cd04968 Ig3_Contactin_like Thi 99.6 1.7E-14 3.8E-19 97.1 11.7 87 133-223 1-87 (88)
28 cd05893 Ig_Palladin_C C-termin 99.6 1.4E-14 3.1E-19 93.9 10.7 73 151-223 1-75 (75)
29 cd05723 Ig4_Neogenin Fourth im 99.6 2.1E-14 4.5E-19 92.4 11.3 71 150-223 1-71 (71)
30 cd05870 Ig5_NCAM-2 Fifth immun 99.6 2.5E-14 5.4E-19 98.3 11.9 90 133-223 2-98 (98)
31 cd05730 Ig3_NCAM-1_like Third 99.6 3.6E-14 7.9E-19 97.0 12.7 82 142-225 12-94 (95)
32 cd05859 Ig4_PDGFR-alpha Fourth 99.6 2.4E-14 5.1E-19 98.4 11.3 83 142-224 12-100 (101)
33 cd05743 Ig_Perlecan_D2_like Im 99.6 3.3E-14 7.2E-19 93.3 11.6 76 148-223 1-76 (78)
34 cd05865 Ig1_NCAM-1 First immun 99.6 5.5E-14 1.2E-18 95.7 12.2 86 138-223 5-95 (96)
35 cd05866 Ig1_NCAM-2 First immun 99.6 8.2E-14 1.8E-18 93.9 12.7 85 137-222 4-90 (92)
36 cd05891 Ig_M-protein_C C-termi 99.6 6.7E-14 1.4E-18 94.8 12.4 84 140-223 8-92 (92)
37 cd05732 Ig5_NCAM-1_like Fifth 99.6 4.8E-14 1E-18 96.7 11.7 90 133-223 2-96 (96)
38 cd05744 Ig_Myotilin_C_like Imm 99.6 4.3E-14 9.4E-19 91.9 10.8 73 151-223 1-75 (75)
39 cd05735 Ig8_DSCAM Eight immuno 99.6 8.4E-14 1.8E-18 93.5 12.3 79 148-226 1-84 (88)
40 cd05863 Ig2_VEGFR-3 Second imm 99.6 3.1E-14 6.7E-19 89.7 9.2 65 151-223 1-65 (67)
41 cd05868 Ig4_NrCAM Fourth immun 99.6 6.4E-14 1.4E-18 91.4 10.9 74 148-223 1-75 (76)
42 cd05867 Ig4_L1-CAM_like Fourth 99.6 8.5E-14 1.9E-18 90.9 11.4 74 148-223 1-75 (76)
43 cd04969 Ig5_Contactin_like Fif 99.6 4.8E-14 1E-18 91.3 9.5 73 148-223 1-73 (73)
44 cd05857 Ig2_FGFR Second immuno 99.6 1.3E-13 2.8E-18 92.2 11.8 81 143-223 4-85 (85)
45 cd04978 Ig4_L1-NrCAM_like Four 99.5 9E-14 2E-18 90.9 10.4 75 148-223 1-75 (76)
46 cd07693 Ig1_Robo First immunog 99.5 2E-13 4.2E-18 94.3 12.1 91 133-223 1-99 (100)
47 cd05854 Ig6_Contactin-2 Sixth 99.5 3.7E-13 8E-18 89.7 11.7 77 149-225 1-83 (85)
48 cd05746 Ig4_Peroxidasin Fourth 99.5 8.2E-14 1.8E-18 89.1 7.9 68 151-221 1-68 (69)
49 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 3.9E-13 8.6E-18 88.5 11.0 71 152-222 2-79 (81)
50 cd05848 Ig1_Contactin-5 First 99.5 8.4E-13 1.8E-17 89.8 12.8 82 134-217 2-87 (94)
51 cd05864 Ig2_VEGFR-2 Second imm 99.5 1.9E-13 4.2E-18 87.1 9.0 68 151-223 1-68 (70)
52 cd04976 Ig2_VEGFR Second immun 99.5 2.5E-13 5.4E-18 87.3 9.4 69 151-223 1-69 (71)
53 cd05760 Ig2_PTK7 Second immuno 99.5 3.7E-13 8.1E-18 88.0 10.1 72 151-224 1-73 (77)
54 cd04973 Ig1_FGFR First immunog 99.5 3.3E-13 7.1E-18 88.7 9.8 78 141-223 2-79 (79)
55 cd05855 Ig_TrkB_d5 Fifth domai 99.5 3.8E-13 8.2E-18 87.5 9.9 71 152-222 2-77 (79)
56 cd05736 Ig2_Follistatin_like S 99.5 5.1E-13 1.1E-17 87.2 10.1 74 151-224 1-74 (76)
57 cd05876 Ig3_L1-CAM Third immun 99.5 2.2E-13 4.9E-18 87.6 8.2 70 151-223 1-70 (71)
58 cd05850 Ig1_Contactin-2 First 99.5 2.1E-12 4.5E-17 87.9 13.2 86 134-221 2-92 (94)
59 cd05773 Ig8_hNephrin_like Eigh 99.5 1.7E-12 3.7E-17 90.7 12.9 79 147-225 22-106 (109)
60 cd05849 Ig1_Contactin-1 First 99.5 1.3E-12 2.8E-17 88.5 11.9 84 134-221 2-91 (93)
61 cd05763 Ig_1 Subgroup of the i 99.5 3.8E-13 8.3E-18 87.6 8.8 71 151-223 1-74 (75)
62 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 8.6E-13 1.9E-17 84.1 10.2 68 148-221 1-68 (69)
63 cd05740 Ig_CEACAM_D4 Fourth im 99.5 1.1E-12 2.4E-17 88.5 11.2 79 141-223 11-90 (91)
64 cd05856 Ig2_FGFRL1-like Second 99.5 9.3E-13 2E-17 87.4 10.2 78 143-222 4-81 (82)
65 cd05758 Ig5_KIRREL3-like Fifth 99.5 2.5E-12 5.4E-17 88.3 12.6 88 133-221 2-97 (98)
66 cd05726 Ig4_Robo Fhird immunog 99.5 5.6E-13 1.2E-17 90.1 9.1 75 148-225 1-83 (90)
67 cd05853 Ig6_Contactin-4 Sixth 99.5 8.3E-13 1.8E-17 87.2 9.5 77 149-225 1-83 (85)
68 cd05764 Ig_2 Subgroup of the i 99.5 7.4E-13 1.6E-17 86.0 9.1 73 148-223 1-74 (74)
69 cd04970 Ig6_Contactin_like Six 99.5 1.4E-12 3E-17 87.1 10.6 77 149-225 1-83 (85)
70 cd05858 Ig3_FGFR-2 Third immun 99.5 9.9E-13 2.2E-17 88.8 9.8 76 148-223 1-89 (90)
71 cd05725 Ig3_Robo Third immunog 99.4 5.4E-13 1.2E-17 85.4 7.9 69 151-223 1-69 (69)
72 cd04977 Ig1_NCAM-1_like First 99.4 3.8E-12 8.2E-17 86.2 12.4 84 138-222 5-91 (92)
73 cd05771 IgC_Tapasin_R Tapasin- 99.4 3.7E-12 8E-17 93.4 13.0 115 98-212 2-131 (139)
74 cd05749 Ig2_Tyro3_like Second 99.4 1.6E-12 3.5E-17 85.4 9.6 73 137-217 2-75 (81)
75 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 1.3E-12 2.9E-17 84.7 9.2 70 151-223 1-73 (74)
76 cd05750 Ig_Pro_neuregulin Immu 99.4 1.3E-12 2.7E-17 85.2 9.1 70 151-220 1-74 (75)
77 cd05731 Ig3_L1-CAM_like Third 99.4 1.5E-12 3.2E-17 83.9 9.3 70 151-223 1-70 (71)
78 cd05724 Ig2_Robo Second immuno 99.4 1.7E-12 3.6E-17 87.0 9.8 80 140-222 3-85 (86)
79 cd05756 Ig1_IL1R_like First im 99.4 8.1E-13 1.8E-17 89.6 7.8 80 142-223 8-94 (94)
80 cd05722 Ig1_Neogenin First imm 99.4 2.9E-12 6.3E-17 87.5 10.3 84 136-222 2-94 (95)
81 cd04974 Ig3_FGFR Third immunog 99.4 1.6E-12 3.4E-17 87.8 8.9 76 148-223 1-89 (90)
82 cd05765 Ig_3 Subgroup of the i 99.4 2.3E-12 5.1E-17 85.2 9.1 76 148-223 1-81 (81)
83 cd05733 Ig6_L1-CAM_like Sixth 99.4 3E-12 6.5E-17 83.7 7.9 67 151-217 1-71 (77)
84 cd04967 Ig1_Contactin First Ig 99.4 2.4E-11 5.1E-16 82.3 11.9 82 134-217 2-87 (91)
85 cd07702 Ig2_VEGFR-1 Second imm 99.3 9.2E-12 2E-16 79.6 8.7 68 151-221 1-68 (72)
86 cd05875 Ig6_hNeurofascin_like 99.3 1.2E-11 2.7E-16 80.6 9.4 66 151-218 1-72 (77)
87 cd05874 Ig6_NrCAM Sixth immuno 99.3 8.5E-12 1.8E-16 81.4 8.6 68 151-218 1-72 (77)
88 cd05895 Ig_Pro_neuregulin-1 Im 99.3 2.4E-11 5.2E-16 79.3 9.2 70 151-220 1-75 (76)
89 cd05742 Ig1_VEGFR_like First i 99.3 2E-11 4.4E-16 81.3 9.0 76 148-223 1-83 (84)
90 cd05752 Ig1_FcgammaR_like Frst 99.3 9.8E-12 2.1E-16 81.1 7.2 67 134-211 1-68 (78)
91 cd05861 Ig1_PDGFR-alphabeta Fr 99.3 3.5E-11 7.6E-16 79.9 9.9 77 148-224 1-83 (84)
92 cd05729 Ig2_FGFR_like Second i 99.3 9.1E-11 2E-15 78.3 11.6 80 143-222 4-84 (85)
93 cd05898 Ig5_KIRREL3 Fifth immu 99.3 1.6E-10 3.4E-15 78.4 12.4 88 133-221 2-97 (98)
94 cd07701 Ig1_Necl-3 First (N-te 99.3 7.5E-11 1.6E-15 80.2 10.6 83 140-223 4-95 (95)
95 cd05734 Ig7_DSCAM Seventh immu 99.3 3.4E-11 7.3E-16 79.2 8.5 69 151-222 1-78 (79)
96 cd05873 Ig_Sema4D_like Immunog 99.3 1.2E-10 2.6E-15 77.2 10.7 68 140-212 3-71 (87)
97 cd05882 Ig1_Necl-1 First (N-te 99.3 8.3E-11 1.8E-15 79.8 10.0 70 141-210 5-83 (95)
98 cd05754 Ig3_Perlecan_like Thir 99.3 7E-11 1.5E-15 78.9 9.4 78 138-221 6-84 (85)
99 cd05762 Ig8_MLCK Eighth immuno 99.2 9.2E-11 2E-15 80.3 9.2 76 59-134 11-94 (98)
100 cd04979 Ig_Semaphorin_C Immuno 99.2 1.1E-10 2.3E-15 78.7 8.6 82 140-224 3-87 (89)
101 cd05771 IgC_Tapasin_R Tapasin- 99.2 1.3E-10 2.8E-15 85.2 9.5 77 190-276 2-80 (139)
102 KOG3515|consensus 99.2 5E-11 1.1E-15 106.2 8.3 212 59-280 18-251 (741)
103 cd05757 Ig2_IL1R_like Second i 99.2 1.4E-10 3.1E-15 78.1 8.6 77 143-223 5-86 (92)
104 cd05870 Ig5_NCAM-2 Fifth immun 99.2 4.4E-10 9.6E-15 77.1 9.9 74 49-122 2-89 (98)
105 cd05753 Ig2_FcgammaR_like Seco 99.1 4E-10 8.6E-15 74.6 8.3 68 141-216 7-75 (83)
106 cd05866 Ig1_NCAM-2 First immun 99.1 2.8E-10 6.1E-15 76.7 7.5 65 59-123 11-82 (92)
107 smart00409 IG Immunoglobulin. 99.1 5.4E-09 1.2E-13 69.2 12.8 82 142-223 3-85 (86)
108 smart00410 IG_like Immunoglobu 99.1 5.4E-09 1.2E-13 69.2 12.8 82 142-223 3-85 (86)
109 cd05894 Ig_C5_MyBP-C C5 immuno 99.1 1.8E-09 4E-14 71.9 9.4 65 59-123 6-78 (86)
110 cd07690 Ig1_CD4 First immunogl 99.1 1.3E-09 2.8E-14 73.5 8.4 72 144-215 3-91 (94)
111 cd05735 Ig8_DSCAM Eight immuno 99.1 1.5E-09 3.2E-14 72.8 8.7 72 63-134 1-85 (88)
112 cd05727 Ig2_Contactin-2-like S 99.1 4.8E-10 1E-14 75.5 6.2 73 141-215 11-86 (96)
113 cd05717 Ig1_Necl-1-3_like Firs 99.1 3.2E-09 7E-14 72.3 10.5 81 141-222 5-94 (95)
114 smart00408 IGc2 Immunoglobulin 99.0 1.2E-09 2.6E-14 67.9 7.5 63 147-213 1-63 (63)
115 cd05737 Ig_Myomesin_like_C C-t 99.0 2E-09 4.3E-14 72.9 9.0 65 59-123 12-84 (92)
116 PF07679 I-set: Immunoglobulin 99.0 1.8E-09 4E-14 72.8 8.8 65 59-123 11-82 (90)
117 cd05862 Ig1_VEGFR First immuno 99.0 2.5E-09 5.4E-14 71.3 9.2 77 148-224 1-85 (86)
118 cd05732 Ig5_NCAM-1_like Fifth 99.0 2.7E-09 5.8E-14 72.9 9.6 74 50-123 3-88 (96)
119 cd05860 Ig4_SCFR Fourth immuno 99.0 6.8E-09 1.5E-13 70.0 11.1 83 142-224 12-100 (101)
120 PF13895 Ig_2: Immunoglobulin 99.0 3.3E-09 7.2E-14 69.6 8.7 78 134-223 2-80 (80)
121 cd05743 Ig_Perlecan_D2_like Im 99.0 2.8E-09 6.2E-14 69.7 8.2 61 63-123 1-68 (78)
122 cd05852 Ig5_Contactin-1 Fifth 99.0 1.1E-09 2.5E-14 70.5 6.2 58 63-123 1-65 (73)
123 PHA03376 BARF1; Provisional 99.0 8.1E-09 1.8E-13 76.3 11.1 122 142-273 20-161 (221)
124 cd05871 Ig_Semaphorin_classIII 99.0 4.1E-09 8.8E-14 71.0 8.8 77 143-224 6-89 (91)
125 cd05869 Ig5_NCAM-1 Fifth immun 99.0 8E-09 1.7E-13 70.7 10.2 73 50-122 3-88 (97)
126 cd05854 Ig6_Contactin-2 Sixth 99.0 2.7E-09 5.9E-14 71.0 7.5 71 64-134 1-85 (85)
127 cd05745 Ig3_Peroxidasin Third 99.0 1.6E-09 3.5E-14 70.1 5.9 59 62-123 1-66 (74)
128 cd05747 Ig5_Titin_like M5, fif 99.0 7.3E-09 1.6E-13 70.1 9.2 65 59-123 14-85 (92)
129 PF00047 ig: Immunoglobulin do 98.9 2.7E-09 5.9E-14 66.9 6.1 61 148-208 1-64 (64)
130 cd05748 Ig_Titin_like Immunogl 98.9 9.3E-09 2E-13 66.5 8.4 58 65-122 1-65 (74)
131 cd04977 Ig1_NCAM-1_like First 98.9 7.1E-09 1.5E-13 70.1 7.9 63 59-121 11-81 (92)
132 cd05892 Ig_Myotilin_C C-termin 98.9 7.1E-09 1.5E-13 67.1 7.5 58 66-123 1-67 (75)
133 cd05845 Ig2_L1-CAM_like Second 98.9 3.1E-09 6.8E-14 71.4 5.9 72 140-214 10-84 (95)
134 cd05851 Ig3_Contactin-1 Third 98.9 4.4E-09 9.4E-14 70.5 6.6 62 59-122 12-78 (88)
135 cd05893 Ig_Palladin_C C-termin 98.9 7.7E-09 1.7E-13 66.9 7.5 58 66-123 1-67 (75)
136 cd05897 Ig2_IL1R2_like Second 98.9 8.7E-09 1.9E-13 69.4 7.9 72 143-216 5-82 (95)
137 cd04975 Ig4_SCFR_like Fourth i 98.9 7.4E-09 1.6E-13 71.1 7.4 65 59-123 14-91 (101)
138 cd04970 Ig6_Contactin_like Six 98.9 5.6E-09 1.2E-13 69.6 6.4 71 64-134 1-85 (85)
139 cd05853 Ig6_Contactin-4 Sixth 98.9 2.9E-09 6.2E-14 70.3 4.9 71 64-134 1-85 (85)
140 cd04972 Ig_TrkABC_d4 Fourth do 98.9 1.9E-08 4.1E-13 67.8 8.8 63 60-122 12-81 (90)
141 PHA03376 BARF1; Provisional 98.9 1.2E-07 2.7E-12 70.1 13.3 88 85-172 75-163 (221)
142 cd04969 Ig5_Contactin_like Fif 98.9 6.7E-09 1.5E-13 67.0 6.1 58 63-123 1-65 (73)
143 cd05881 Ig1_Necl-2 First (N-te 98.9 8.2E-08 1.8E-12 64.7 11.4 70 141-210 5-83 (95)
144 cd05865 Ig1_NCAM-1 First immun 98.9 1.1E-08 2.5E-13 69.5 7.1 63 59-121 11-84 (96)
145 cd05872 Ig_Sema4B_like Immunog 98.9 2.4E-08 5.1E-13 65.8 8.2 76 141-222 4-79 (85)
146 cd05896 Ig1_IL1RAPL-1_like Fir 98.8 3.7E-08 8.1E-13 66.6 9.1 80 141-222 8-103 (104)
147 cd05740 Ig_CEACAM_D4 Fourth im 98.8 2.1E-08 4.5E-13 67.6 7.5 62 59-123 14-81 (91)
148 cd04974 Ig3_FGFR Third immunog 98.8 2E-08 4.2E-13 67.7 7.3 60 63-122 1-80 (90)
149 cd05882 Ig1_Necl-1 First (N-te 98.8 5.1E-08 1.1E-12 66.1 9.4 62 59-120 8-85 (95)
150 cd05723 Ig4_Neogenin Fourth im 98.8 1.7E-08 3.7E-13 64.7 6.7 56 65-123 1-63 (71)
151 cd05744 Ig_Myotilin_C_like Imm 98.8 3.6E-08 7.8E-13 63.9 8.1 57 66-122 1-66 (75)
152 cd05857 Ig2_FGFR Second immuno 98.8 3.5E-08 7.7E-13 65.7 8.2 64 60-123 6-77 (85)
153 cd05891 Ig_M-protein_C C-termi 98.8 3.9E-08 8.5E-13 66.5 8.2 65 59-123 12-84 (92)
154 cd05728 Ig4_Contactin-2-like F 98.8 1.9E-08 4.1E-13 67.0 6.4 60 59-122 10-76 (85)
155 cd05773 Ig8_hNephrin_like Eigh 98.8 7.2E-08 1.6E-12 67.3 9.3 72 63-134 23-108 (109)
156 cd05759 Ig2_KIRREL3-like Secon 98.8 7.1E-08 1.5E-12 63.7 8.8 64 151-214 2-71 (82)
157 cd05885 Ig2_Necl-4 Second immu 98.8 3.5E-08 7.5E-13 64.1 6.8 64 151-214 2-68 (80)
158 cd05863 Ig2_VEGFR-3 Second imm 98.8 1.4E-08 2.9E-13 64.0 4.5 55 66-122 1-56 (67)
159 cd04983 IgV_TCR_alpha_like Imm 98.8 9.8E-08 2.1E-12 66.8 9.4 74 139-212 4-93 (109)
160 cd05868 Ig4_NrCAM Fourth immun 98.8 2E-08 4.4E-13 65.2 5.5 58 63-122 1-66 (76)
161 cd05867 Ig4_L1-CAM_like Fourth 98.8 1.7E-08 3.6E-13 65.7 5.0 58 63-122 1-66 (76)
162 cd07701 Ig1_Necl-3 First (N-te 98.8 9E-08 2E-12 65.0 8.8 64 59-122 8-87 (95)
163 cd04973 Ig1_FGFR First immunog 98.7 4.6E-08 9.9E-13 64.1 6.9 59 60-122 6-70 (79)
164 cd05746 Ig4_Peroxidasin Fourth 98.7 2E-08 4.4E-13 63.9 5.1 55 66-123 1-62 (69)
165 cd04968 Ig3_Contactin_like Thi 98.7 3E-08 6.5E-13 66.5 5.8 62 59-122 12-78 (88)
166 cd05858 Ig3_FGFR-2 Third immun 98.7 4.7E-08 1E-12 65.8 6.6 60 63-122 1-80 (90)
167 cd05730 Ig3_NCAM-1_like Third 98.7 4.5E-08 9.8E-13 66.7 6.5 61 60-122 15-83 (95)
168 PF13927 Ig_3: Immunoglobulin 98.7 3.7E-08 8E-13 63.6 5.8 74 133-210 1-75 (75)
169 cd05859 Ig4_PDGFR-alpha Fourth 98.7 7.1E-08 1.5E-12 66.3 7.3 65 59-123 14-91 (101)
170 cd05861 Ig1_PDGFR-alphabeta Fr 98.7 7.5E-08 1.6E-12 63.9 7.1 59 63-121 1-70 (84)
171 cd05764 Ig_2 Subgroup of the i 98.7 6.6E-08 1.4E-12 62.5 6.6 57 63-122 1-65 (74)
172 cd05899 IgV_TCR_beta Immunoglo 98.7 1.3E-07 2.8E-12 66.3 8.6 73 138-211 3-94 (110)
173 cd05726 Ig4_Robo Fhird immunog 98.7 5.2E-08 1.1E-12 65.6 6.1 57 63-122 1-72 (90)
174 cd05758 Ig5_KIRREL3-like Fifth 98.7 2.6E-07 5.5E-12 63.3 9.4 65 59-123 12-91 (98)
175 cd04980 IgV_L_kappa Immunoglob 98.7 2.1E-07 4.6E-12 64.7 9.1 75 137-211 4-93 (106)
176 cd05765 Ig_3 Subgroup of the i 98.7 1.1E-07 2.5E-12 62.5 7.4 61 63-123 1-73 (81)
177 cd05856 Ig2_FGFRL1-like Second 98.7 1.2E-07 2.6E-12 62.6 7.2 63 60-122 6-73 (82)
178 cd04978 Ig4_L1-NrCAM_like Four 98.7 6.3E-08 1.4E-12 62.9 5.7 59 63-122 1-66 (76)
179 cd05725 Ig3_Robo Third immunog 98.7 5.1E-08 1.1E-12 62.1 5.1 54 66-122 1-60 (69)
180 cd05742 Ig1_VEGFR_like First i 98.7 7.6E-08 1.6E-12 63.9 6.1 60 63-122 1-74 (84)
181 cd05876 Ig3_L1-CAM Third immun 98.6 7.2E-08 1.6E-12 61.7 5.4 58 66-123 1-62 (71)
182 cd05751 Ig1_LILRB1_like First 98.6 1.7E-07 3.7E-12 63.2 7.4 74 133-211 2-75 (91)
183 cd05752 Ig1_FcgammaR_like Frst 98.6 6.1E-08 1.3E-12 63.2 4.9 56 59-119 11-68 (78)
184 cd05724 Ig2_Robo Second immuno 98.6 1.6E-07 3.6E-12 62.5 7.2 62 59-123 7-77 (86)
185 cd05898 Ig5_KIRREL3 Fifth immu 98.6 5.6E-07 1.2E-11 61.1 9.6 65 59-123 12-91 (98)
186 cd05753 Ig2_FcgammaR_like Seco 98.6 1.5E-07 3.3E-12 62.2 6.5 61 59-121 10-72 (83)
187 cd05717 Ig1_Necl-1-3_like Firs 98.6 3.5E-07 7.5E-12 62.3 8.4 63 59-121 8-86 (95)
188 cd04982 IgV_TCR_gamma Immunogl 98.6 3.7E-07 8E-12 64.6 8.6 71 140-210 5-98 (116)
189 cd05760 Ig2_PTK7 Second immuno 98.6 1.3E-07 2.9E-12 61.5 5.9 55 66-122 1-63 (77)
190 cd05750 Ig_Pro_neuregulin Immu 98.6 2.7E-07 5.8E-12 59.8 7.3 58 66-123 1-69 (75)
191 cd05749 Ig2_Tyro3_like Second 98.6 1.1E-07 2.4E-12 62.4 5.3 39 241-279 3-42 (81)
192 cd05763 Ig_1 Subgroup of the i 98.6 2.2E-07 4.8E-12 60.2 6.7 55 66-122 1-65 (75)
193 cd05738 Ig2_RPTP_IIa_LAR_like 98.6 9.6E-08 2.1E-12 61.7 4.9 54 66-122 1-63 (74)
194 cd05714 Ig_CSPGs_LP Immunoglob 98.6 1.2E-06 2.5E-11 61.0 10.7 79 147-225 1-104 (106)
195 cd04976 Ig2_VEGFR Second immun 98.6 7.4E-08 1.6E-12 61.7 4.2 53 66-122 1-60 (71)
196 cd05733 Ig6_L1-CAM_like Sixth 98.6 1.4E-07 2.9E-12 61.5 5.5 57 66-124 1-70 (77)
197 cd05900 Ig_Aggrecan Immunoglob 98.6 8.3E-07 1.8E-11 61.9 9.7 79 147-225 1-110 (112)
198 cd00099 IgV Immunoglobulin var 98.6 4.9E-07 1.1E-11 62.7 8.5 70 144-213 2-91 (105)
199 cd07693 Ig1_Robo First immunog 98.6 1.4E-07 3.1E-12 64.7 5.6 44 236-279 1-44 (100)
200 cd05862 Ig1_VEGFR First immuno 98.6 2.4E-07 5.2E-12 61.7 6.3 59 63-121 1-74 (86)
201 cd05734 Ig7_DSCAM Seventh immu 98.6 2.4E-07 5.3E-12 60.7 6.2 55 66-123 1-70 (79)
202 cd05739 Ig3_RPTP_IIa_LAR_like 98.6 4.1E-07 8.8E-12 57.8 7.0 58 63-122 1-61 (69)
203 cd05731 Ig3_L1-CAM_like Third 98.5 1.3E-07 2.8E-12 60.5 4.7 55 66-122 1-61 (71)
204 cd05756 Ig1_IL1R_like First im 98.5 2.2E-07 4.8E-12 62.9 5.9 61 60-122 11-85 (94)
205 cd05881 Ig1_Necl-2 First (N-te 98.5 8.4E-07 1.8E-11 59.8 8.6 63 59-121 8-86 (95)
206 cd05864 Ig2_VEGFR-2 Second imm 98.5 1.5E-07 3.3E-12 59.9 4.6 54 66-122 1-59 (70)
207 cd05751 Ig1_LILRB1_like First 98.5 3.9E-07 8.5E-12 61.4 6.7 72 48-119 1-75 (91)
208 cd05713 Ig_MOG_like Immunoglob 98.5 1.7E-06 3.7E-11 59.4 10.1 76 148-223 1-99 (100)
209 cd05754 Ig3_Perlecan_like Thir 98.5 2.3E-07 4.9E-12 61.8 5.4 64 59-122 12-77 (85)
210 cd05718 Ig1_PVR_like First imm 98.5 1.8E-06 4E-11 59.0 10.0 75 149-223 1-97 (98)
211 cd05736 Ig2_Follistatin_like S 98.5 2.8E-07 6E-12 59.9 5.6 57 66-122 1-64 (76)
212 cd04971 Ig_TrKABC_d5 Fifth dom 98.5 6.9E-07 1.5E-11 58.7 7.2 57 67-123 2-72 (81)
213 cd05877 Ig_LP_like Immunoglobu 98.5 3.1E-06 6.6E-11 58.8 10.9 79 147-225 1-104 (106)
214 cd07690 Ig1_CD4 First immunogl 98.5 6.7E-07 1.4E-11 60.3 6.9 63 60-122 4-90 (94)
215 cd04984 IgV_L_lambda Immunoglo 98.5 1E-06 2.2E-11 60.3 7.9 67 144-210 2-84 (98)
216 cd07702 Ig2_VEGFR-1 Second imm 98.5 2.6E-07 5.7E-12 59.0 4.6 52 66-121 1-60 (72)
217 cd05774 Ig_CEACAM_D1 First imm 98.5 2E-06 4.4E-11 59.3 9.3 80 139-221 4-103 (105)
218 cd05848 Ig1_Contactin-5 First 98.5 6.1E-07 1.3E-11 60.8 6.6 44 237-280 2-48 (94)
219 cd05855 Ig_TrkB_d5 Fifth domai 98.5 7.9E-07 1.7E-11 57.8 6.8 56 68-123 3-70 (79)
220 cd05874 Ig6_NrCAM Sixth immuno 98.5 5.4E-07 1.2E-11 58.6 5.8 57 66-124 1-70 (77)
221 cd05875 Ig6_hNeurofascin_like 98.5 7.4E-07 1.6E-11 58.0 6.4 57 66-124 1-70 (77)
222 cd05879 Ig_P0 Immunoglobulin ( 98.4 4.3E-06 9.3E-11 58.8 10.1 75 140-214 5-105 (116)
223 cd05873 Ig_Sema4D_like Immunog 98.4 7.4E-07 1.6E-11 59.1 5.9 58 59-120 7-71 (87)
224 cd05850 Ig1_Contactin-2 First 98.4 1.2E-06 2.5E-11 59.5 6.7 44 237-280 2-48 (94)
225 cd05895 Ig_Pro_neuregulin-1 Im 98.4 1.9E-06 4.2E-11 55.9 7.3 57 66-122 1-69 (76)
226 cd05775 Ig_SLAM-CD84_like_N N- 98.4 2E-06 4.4E-11 58.6 7.6 78 146-223 2-96 (97)
227 cd05711 Ig_FcalphaRI Immunoglo 98.4 2E-06 4.3E-11 58.3 7.4 69 140-209 7-75 (94)
228 cd04967 Ig1_Contactin First Ig 98.4 1.3E-06 2.8E-11 58.9 6.4 60 63-124 19-86 (91)
229 cd05741 Ig_CEACAM_D1_like Firs 98.4 3.6E-06 7.9E-11 56.7 8.5 66 148-214 1-82 (92)
230 cd05878 Ig_Aggrecan_like Immun 98.4 1.1E-05 2.5E-10 56.3 11.1 79 147-225 1-108 (110)
231 PF13927 Ig_3: Immunoglobulin 98.3 2.4E-06 5.1E-11 55.0 6.8 69 50-118 2-75 (75)
232 cd05883 Ig2_Necl-2 Second immu 98.3 7.9E-06 1.7E-10 53.3 9.0 74 151-224 2-80 (82)
233 PF00047 ig: Immunoglobulin do 98.3 1.6E-06 3.5E-11 54.1 5.7 54 63-116 1-64 (64)
234 cd05755 Ig2_ICAM-1_like Second 98.3 4.9E-06 1.1E-10 56.5 8.0 77 138-214 6-87 (100)
235 cd05845 Ig2_L1-CAM_like Second 98.3 1.1E-06 2.3E-11 59.2 4.6 60 59-121 14-83 (95)
236 PF13895 Ig_2: Immunoglobulin 98.3 2.4E-06 5.1E-11 55.8 6.3 67 50-121 2-69 (80)
237 cd05722 Ig1_Neogenin First imm 98.3 1.4E-06 3.1E-11 59.2 5.3 41 240-280 3-43 (95)
238 cd05849 Ig1_Contactin-1 First 98.3 1.8E-06 3.8E-11 58.4 5.5 43 237-279 2-47 (93)
239 cd05880 Ig_EVA1 Immunoglobulin 98.3 1.1E-05 2.5E-10 56.8 9.7 74 140-213 5-103 (115)
240 cd00098 IgC Immunoglobulin Con 98.3 5.4E-06 1.2E-10 56.3 7.4 69 146-214 11-87 (95)
241 cd07706 IgV_TCR_delta Immunogl 98.3 1.1E-05 2.3E-10 57.0 9.1 73 138-210 4-93 (116)
242 smart00408 IGc2 Immunoglobulin 98.2 3.1E-06 6.7E-11 52.1 5.6 59 62-120 1-62 (63)
243 cd05729 Ig2_FGFR_like Second i 98.2 8.5E-06 1.8E-10 53.9 8.0 63 60-122 6-76 (85)
244 PF07686 V-set: Immunoglobulin 98.2 2.4E-05 5.1E-10 54.8 10.7 73 139-211 7-101 (114)
245 cd05715 Ig_P0-like Immunoglobu 98.2 1.1E-05 2.3E-10 57.1 8.8 74 140-213 5-104 (116)
246 cd05761 Ig2_Necl-1-4_like Seco 98.2 1.1E-05 2.5E-10 53.0 8.0 64 151-214 2-70 (82)
247 cd05727 Ig2_Contactin-2-like S 98.2 2.8E-06 6.1E-11 57.2 4.8 62 59-122 14-85 (96)
248 cd07700 IgV_CD8_beta Immunoglo 98.2 1E-05 2.2E-10 56.3 7.8 66 144-209 2-92 (107)
249 smart00410 IG_like Immunoglobu 98.2 2E-05 4.2E-10 51.7 8.9 62 60-121 6-75 (86)
250 smart00409 IG Immunoglobulin. 98.2 2E-05 4.2E-10 51.7 8.9 62 60-121 6-75 (86)
251 cd05720 Ig_CD8_alpha Immunoglo 98.2 1.1E-05 2.3E-10 55.8 7.4 67 144-210 2-90 (104)
252 cd05902 Ig_Neurocan Immunoglob 98.2 4.4E-05 9.5E-10 53.1 10.4 78 148-225 2-108 (110)
253 cd05716 Ig_pIgR Immunoglobulin 98.1 1.4E-05 3.1E-10 54.6 7.6 70 143-212 2-87 (98)
254 cd04979 Ig_Semaphorin_C Immuno 98.1 2.9E-06 6.3E-11 56.9 4.0 59 60-121 8-75 (89)
255 cd07705 Ig2_Necl-1 Second immu 98.1 2.6E-05 5.6E-10 51.4 8.3 63 151-214 2-71 (83)
256 KOG3515|consensus 98.1 1.2E-05 2.5E-10 72.7 8.4 173 96-278 360-539 (741)
257 cd05884 Ig2_Necl-3 Second immu 98.1 2.6E-05 5.6E-10 51.4 8.0 62 151-212 2-69 (83)
258 cd05888 Ig1_Nectin-4_like Frst 98.1 5.9E-05 1.3E-09 51.7 10.0 74 150-223 2-99 (100)
259 cd05846 Ig1_MRC-OX-2_like Firs 98.1 4.6E-05 9.9E-10 51.9 9.2 76 148-223 1-96 (97)
260 cd04983 IgV_TCR_alpha_like Imm 98.1 3.1E-05 6.7E-10 54.0 8.1 61 59-120 9-93 (109)
261 cd05757 Ig2_IL1R_like Second i 98.1 8.7E-06 1.9E-10 54.8 4.9 58 60-121 7-76 (92)
262 cd05886 Ig1_Nectin-1_like Firs 98.0 0.00011 2.3E-09 50.1 10.2 35 189-223 63-98 (99)
263 cd05712 Ig_Siglec_N Immunoglob 98.0 5.2E-05 1.1E-09 53.8 9.0 73 139-211 5-102 (119)
264 cd05901 Ig_Versican Immunoglob 98.0 0.0002 4.2E-09 50.1 11.2 38 188-225 78-115 (117)
265 PHA02987 Ig domain OX-2-like p 98.0 6.5E-05 1.4E-09 56.2 9.2 84 142-225 24-123 (189)
266 cd04980 IgV_L_kappa Immunoglob 98.0 2.9E-05 6.3E-10 53.9 7.0 60 60-119 12-93 (106)
267 cd04984 IgV_L_lambda Immunoglo 98.0 3.2E-05 6.8E-10 52.8 6.8 59 60-118 3-84 (98)
268 cd05772 IgC_SIRP Signal-regula 98.0 0.0002 4.4E-09 49.9 10.8 70 144-214 17-94 (111)
269 cd00099 IgV Immunoglobulin var 98.0 4.5E-05 9.8E-10 52.7 7.5 61 60-120 3-90 (105)
270 cd00096 Ig Immunoglobulin doma 98.0 5.7E-05 1.2E-09 47.2 7.5 62 151-212 1-66 (74)
271 cd04981 IgV_H Immunoglobulin ( 98.0 7.5E-05 1.6E-09 52.8 8.6 71 140-210 4-97 (117)
272 cd05711 Ig_FcalphaRI Immunoglo 98.0 5.3E-05 1.1E-09 51.3 7.4 68 50-117 2-75 (94)
273 cd07694 Ig2_CD4 Second immunog 97.9 0.00024 5.1E-09 46.4 9.7 75 143-223 9-85 (88)
274 cd07698 IgC_MHC_I_alpha3 Class 97.9 0.00015 3.3E-09 48.9 9.2 63 148-213 14-84 (93)
275 cd05871 Ig_Semaphorin_classIII 97.9 6.5E-05 1.4E-09 50.5 6.9 55 60-119 8-75 (91)
276 cd05887 Ig1_Nectin-3_like Firs 97.9 0.0002 4.4E-09 48.4 9.3 74 150-223 2-95 (96)
277 cd05713 Ig_MOG_like Immunoglob 97.8 0.00011 2.3E-09 50.4 7.5 28 95-122 63-90 (100)
278 cd05899 IgV_TCR_beta Immunoglo 97.8 8.9E-05 1.9E-09 51.8 7.3 61 59-119 9-94 (110)
279 cd05872 Ig_Sema4B_like Immunog 97.8 3.8E-05 8.3E-10 50.6 4.7 56 59-118 7-68 (85)
280 cd04982 IgV_TCR_gamma Immunogl 97.8 0.00014 2.9E-09 51.4 7.8 59 60-118 10-98 (116)
281 smart00407 IGc1 Immunoglobulin 97.8 0.00043 9.4E-09 44.6 9.0 63 150-212 1-71 (75)
282 cd05879 Ig_P0 Immunoglobulin ( 97.7 0.0002 4.2E-09 50.4 7.3 28 94-121 77-104 (116)
283 cd07699 IgC_L Immunoglobulin C 97.7 0.00022 4.7E-09 48.8 7.1 73 140-212 9-89 (100)
284 PF08205 C2-set_2: CD80-like C 97.7 0.00038 8.2E-09 46.5 8.2 67 148-214 14-86 (89)
285 smart00406 IGv Immunoglobulin 97.7 0.00025 5.4E-09 46.2 7.2 58 150-207 1-80 (81)
286 cd05896 Ig1_IL1RAPL-1_like Fir 97.7 8.2E-05 1.8E-09 50.5 4.7 27 96-122 69-95 (104)
287 cd05741 Ig_CEACAM_D1_like Firs 97.7 0.00016 3.4E-09 48.7 6.0 26 96-121 56-81 (92)
288 cd07700 IgV_CD8_beta Immunoglo 97.6 0.00023 4.9E-09 49.4 6.7 24 94-117 69-92 (107)
289 cd05900 Ig_Aggrecan Immunoglob 97.6 0.0002 4.3E-09 50.0 6.0 34 87-120 61-97 (112)
290 cd05766 IgC_MHC_II_beta Class 97.6 0.00094 2E-08 45.1 9.1 65 146-213 12-84 (94)
291 cd05880 Ig_EVA1 Immunoglobulin 97.6 0.00021 4.4E-09 50.4 6.1 27 95-121 77-103 (115)
292 cd05774 Ig_CEACAM_D1 First imm 97.6 0.00019 4.2E-09 49.4 5.6 26 96-121 69-94 (105)
293 cd07706 IgV_TCR_delta Immunogl 97.6 0.00024 5.1E-09 50.1 6.3 59 60-118 11-93 (116)
294 cd05847 IgC_CH2_IgE CH2 domain 97.6 0.0012 2.6E-08 44.5 9.2 69 146-214 12-88 (94)
295 cd05715 Ig_P0-like Immunoglobu 97.6 0.00041 8.8E-09 49.0 7.0 27 95-121 78-104 (116)
296 cd05716 Ig_pIgR Immunoglobulin 97.5 0.00033 7.2E-09 47.7 6.3 60 60-119 4-86 (98)
297 cd05897 Ig2_IL1R2_like Second 97.5 0.00023 4.9E-09 48.0 5.3 60 60-121 7-79 (95)
298 cd05877 Ig_LP_like Immunoglobu 97.5 0.00031 6.7E-09 48.6 6.3 27 95-121 66-92 (106)
299 cd05768 IgC_CH4 CH4 domain (fo 97.5 0.00057 1.2E-08 46.9 7.3 70 143-212 11-91 (102)
300 cd05775 Ig_SLAM-CD84_like_N N- 97.5 0.00025 5.5E-09 48.2 5.4 30 92-121 56-85 (97)
301 cd05720 Ig_CD8_alpha Immunoglo 97.5 0.00042 9.2E-09 47.8 6.4 32 87-118 59-90 (104)
302 cd05718 Ig1_PVR_like First imm 97.5 0.0008 1.7E-08 45.7 7.7 24 95-118 60-83 (98)
303 cd05860 Ig4_SCFR Fourth immuno 97.5 0.00075 1.6E-08 45.7 7.2 65 59-123 14-91 (101)
304 cd05878 Ig_Aggrecan_like Immun 97.5 0.00044 9.6E-09 48.2 6.2 27 94-120 69-95 (110)
305 cd05889 Ig1_DNAM-1_like First 97.4 0.0025 5.3E-08 43.1 9.3 70 149-218 1-90 (96)
306 cd05767 IgC_MHC_II_alpha Class 97.4 0.0032 6.9E-08 42.4 9.6 63 147-212 14-84 (94)
307 cd05770 IgC_beta2m Class I maj 97.4 0.0046 1E-07 41.5 10.2 67 146-212 13-83 (93)
308 cd07696 IgC_CH3 CH3 domain (th 97.4 0.0015 3.3E-08 44.2 7.9 73 140-212 6-86 (96)
309 cd05714 Ig_CSPGs_LP Immunoglob 97.4 0.00094 2E-08 46.2 7.1 28 94-121 65-92 (106)
310 PF07686 V-set: Immunoglobulin 97.4 0.0011 2.5E-08 46.1 7.6 61 59-119 12-101 (114)
311 cd05846 Ig1_MRC-OX-2_like Firs 97.3 0.00066 1.4E-08 46.2 5.4 25 95-119 59-83 (97)
312 cd07692 Ig_CD3_epsilon Immunog 97.3 0.00052 1.1E-08 42.1 4.3 53 145-211 4-56 (65)
313 PHA03273 envelope glycoprotein 97.3 0.022 4.8E-07 48.7 15.0 114 96-211 197-324 (486)
314 cd05769 IgC_TCR_beta T cell re 97.2 0.0036 7.8E-08 43.8 8.5 77 140-216 10-96 (115)
315 PHA03269 envelope glycoprotein 97.2 0.016 3.4E-07 49.8 13.3 115 95-211 287-416 (566)
316 cd05719 Ig2_PVR_like Second im 97.2 0.0054 1.2E-07 41.4 8.7 63 149-214 16-84 (95)
317 cd05712 Ig_Siglec_N Immunoglob 97.2 0.0019 4.2E-08 45.7 6.9 34 86-119 67-102 (119)
318 cd05887 Ig1_Nectin-3_like Firs 97.2 0.0021 4.5E-08 43.5 6.6 25 95-119 58-82 (96)
319 cd05755 Ig2_ICAM-1_like Second 97.1 0.0012 2.5E-08 44.9 5.0 40 241-280 6-48 (100)
320 PHA03270 envelope glycoprotein 97.1 0.033 7.1E-07 47.2 14.1 80 95-176 180-265 (466)
321 cd07697 IgC_TCR_gamma T cell r 97.1 0.0041 8.8E-08 42.1 7.4 70 141-212 9-85 (96)
322 PHA03271 envelope glycoprotein 97.1 0.049 1.1E-06 46.0 14.8 116 95-212 205-335 (490)
323 PF07654 C1-set: Immunoglobuli 97.1 0.0037 8E-08 41.1 7.0 65 147-214 7-79 (83)
324 cd05721 IgV_CTLA-4 Immunoglobu 97.0 0.0067 1.5E-07 42.1 8.2 70 139-208 4-93 (115)
325 cd05759 Ig2_KIRREL3-like Secon 97.0 0.001 2.2E-08 43.7 4.0 26 254-279 2-28 (82)
326 cd05885 Ig2_Necl-4 Second immu 97.0 0.00089 1.9E-08 43.5 3.1 26 254-279 2-28 (80)
327 cd07691 Ig_CD3_gamma_delta Imm 96.9 0.0061 1.3E-07 37.7 6.2 49 148-210 6-54 (69)
328 KOG1480|consensus 96.9 0.00083 1.8E-08 60.4 3.0 164 48-214 23-208 (909)
329 cd07694 Ig2_CD4 Second immunog 96.8 0.011 2.3E-07 38.8 7.4 60 59-119 10-73 (88)
330 PHA02987 Ig domain OX-2-like p 96.8 0.0053 1.1E-07 46.2 6.7 58 59-117 26-105 (189)
331 KOG0613|consensus 96.8 0.0026 5.6E-08 60.6 6.1 203 64-276 245-479 (1205)
332 cd04981 IgV_H Immunoglobulin ( 96.8 0.0064 1.4E-07 42.9 6.9 33 86-118 63-97 (117)
333 cd04986 IgC_CH2 CH2 domain (se 96.8 0.0036 7.7E-08 42.5 5.0 75 137-212 8-89 (99)
334 cd04985 IgC_CH1 CH1 domain (fi 96.8 0.012 2.6E-07 39.7 7.5 65 147-212 15-87 (95)
335 cd05886 Ig1_Nectin-1_like Firs 96.8 0.0019 4.1E-08 44.0 3.6 25 95-119 61-85 (99)
336 cd07703 Ig2_Nectin-2_like Seco 96.7 0.023 4.9E-07 38.3 8.4 67 149-216 16-86 (95)
337 cd05768 IgC_CH4 CH4 domain (fo 96.7 0.0037 8.1E-08 42.9 4.6 33 247-279 12-46 (102)
338 PHA02982 hypothetical protein; 96.6 0.088 1.9E-06 40.3 11.9 120 141-276 32-173 (251)
339 cd05888 Ig1_Nectin-4_like Frst 96.6 0.0024 5.2E-08 43.7 3.3 25 95-119 62-86 (100)
340 cd00098 IgC Immunoglobulin Con 96.5 0.0059 1.3E-07 41.1 4.8 32 249-280 11-44 (95)
341 cd05772 IgC_SIRP Signal-regula 96.5 0.0084 1.8E-07 41.8 5.4 34 246-279 16-51 (111)
342 PHA02633 hypothetical protein; 96.5 0.011 2.5E-07 35.6 5.1 37 189-225 18-54 (63)
343 cd05883 Ig2_Necl-2 Second immu 96.4 0.0049 1.1E-07 40.2 3.8 27 254-280 2-29 (82)
344 cd07705 Ig2_Necl-1 Second immu 96.4 0.0049 1.1E-07 40.5 3.9 27 254-280 2-29 (83)
345 cd05761 Ig2_Necl-1-4_like Seco 96.4 0.0046 9.9E-08 40.5 3.7 25 254-278 2-27 (82)
346 cd07698 IgC_MHC_I_alpha3 Class 96.4 0.011 2.3E-07 39.8 5.5 27 251-277 14-42 (93)
347 PF08205 C2-set_2: CD80-like C 96.4 0.0073 1.6E-07 40.2 4.6 27 251-277 14-41 (89)
348 cd07689 Ig2_VCAM-1 Second immu 96.4 0.019 4.2E-07 38.6 6.4 66 145-211 12-85 (99)
349 cd05884 Ig2_Necl-3 Second immu 96.4 0.0053 1.1E-07 40.3 3.7 26 254-279 2-28 (83)
350 smart00406 IGv Immunoglobulin 96.4 0.0049 1.1E-07 39.9 3.6 30 86-115 49-80 (81)
351 PHA02633 hypothetical protein; 96.4 0.0037 8E-08 37.7 2.6 27 95-121 16-42 (63)
352 cd07699 IgC_L Immunoglobulin C 96.3 0.0067 1.5E-07 41.4 4.2 34 245-278 11-46 (100)
353 cd05889 Ig1_DNAM-1_like First 96.3 0.0045 9.7E-08 41.9 3.2 25 95-119 58-82 (96)
354 TIGR00864 PCC polycystin catio 96.3 1.5 3.2E-05 46.5 21.5 223 21-277 1674-1909(2740)
355 cd00096 Ig Immunoglobulin doma 96.3 0.01 2.3E-07 36.4 4.7 26 95-120 41-66 (74)
356 PHA03273 envelope glycoprotein 96.3 0.049 1.1E-06 46.7 9.6 81 189-279 198-281 (486)
357 cd05901 Ig_Versican Immunoglob 96.2 0.01 2.3E-07 41.5 4.8 27 95-121 77-103 (117)
358 cd05769 IgC_TCR_beta T cell re 96.2 0.0082 1.8E-07 42.1 4.2 37 243-279 10-48 (115)
359 cd05721 IgV_CTLA-4 Immunoglobu 96.2 0.022 4.7E-07 39.5 6.2 57 60-116 10-93 (115)
360 cd05770 IgC_beta2m Class I maj 96.1 0.021 4.4E-07 38.4 5.6 30 249-278 13-44 (93)
361 cd07697 IgC_TCR_gamma T cell r 96.1 0.014 3E-07 39.5 4.6 33 247-279 12-46 (96)
362 cd05767 IgC_MHC_II_alpha Class 96.0 0.025 5.4E-07 38.1 5.7 30 250-279 14-45 (94)
363 cd05902 Ig_Neurocan Immunoglob 96.0 0.007 1.5E-07 42.1 3.0 26 95-120 70-95 (110)
364 PHA03270 envelope glycoprotein 96.0 0.082 1.8E-06 44.9 9.5 81 189-279 182-265 (466)
365 cd05766 IgC_MHC_II_beta Class 95.9 0.03 6.5E-07 37.7 5.6 31 249-279 12-44 (94)
366 cd05847 IgC_CH2_IgE CH2 domain 95.9 0.018 3.8E-07 38.8 4.4 28 250-277 13-42 (94)
367 cd04985 IgC_CH1 CH1 domain (fi 95.9 0.032 6.9E-07 37.7 5.7 27 250-276 15-43 (95)
368 KOG4597|consensus 95.8 0.014 3.1E-07 49.9 4.7 90 136-225 199-293 (560)
369 cd07704 Ig2_Nectin-3-4_like Se 95.8 0.071 1.5E-06 36.0 7.2 70 142-212 10-84 (97)
370 smart00407 IGc1 Immunoglobulin 95.8 0.024 5.3E-07 36.3 4.7 25 254-278 2-28 (75)
371 cd07696 IgC_CH3 CH3 domain (th 95.7 0.014 3.1E-07 39.5 3.3 31 246-276 9-42 (96)
372 PF07654 C1-set: Immunoglobuli 95.4 0.053 1.1E-06 35.5 5.4 30 250-279 7-38 (83)
373 TIGR00864 PCC polycystin catio 95.2 5.3 0.00011 42.8 22.1 222 20-273 1757-1990(2740)
374 PHA03269 envelope glycoprotein 95.1 0.17 3.8E-06 43.7 8.7 81 189-279 289-373 (566)
375 PHA03271 envelope glycoprotein 95.1 0.9 2E-05 38.7 12.5 80 189-279 207-291 (490)
376 PF08204 V-set_CD47: CD47 immu 94.6 0.09 2E-06 37.4 4.9 79 145-224 24-120 (130)
377 PF07354 Sp38: Zona-pellucida- 94.6 0.063 1.4E-06 42.6 4.5 49 161-212 11-60 (271)
378 cd04986 IgC_CH2 CH2 domain (se 94.1 0.073 1.6E-06 36.1 3.5 38 239-276 7-47 (99)
379 PHA02982 hypothetical protein; 93.6 0.25 5.4E-06 37.9 5.8 83 85-173 88-173 (251)
380 PHA03042 CD47-like protein; Pr 93.0 0.88 1.9E-05 36.5 8.2 68 147-221 30-102 (286)
381 cd07692 Ig_CD3_epsilon Immunog 92.8 0.21 4.6E-06 30.8 3.6 50 63-119 7-56 (65)
382 PF11465 Receptor_2B4: Natural 92.5 0.79 1.7E-05 31.2 6.4 74 150-223 29-106 (108)
383 PF06328 Lep_receptor_Ig: Ig-l 91.1 1.6 3.4E-05 29.0 6.6 68 139-208 9-81 (89)
384 PHA02865 MHC-like TNF binding 90.8 1.9 4.1E-05 36.2 8.2 21 150-170 216-238 (338)
385 cd07691 Ig_CD3_gamma_delta Imm 90.4 0.68 1.5E-05 28.8 4.0 47 65-118 8-54 (69)
386 cd07689 Ig2_VCAM-1 Second immu 90.3 0.49 1.1E-05 31.9 3.6 33 248-280 12-47 (99)
387 KOG0613|consensus 90.2 1.7 3.7E-05 42.4 8.4 134 139-279 235-378 (1205)
388 PHA02914 Immunoglobulin-like d 90.2 11 0.00024 32.3 12.4 121 143-279 274-423 (500)
389 cd07704 Ig2_Nectin-3-4_like Se 88.0 0.84 1.8E-05 30.8 3.6 28 246-273 11-40 (97)
390 PF07354 Sp38: Zona-pellucida- 87.8 0.6 1.3E-05 37.3 3.2 37 81-120 24-60 (271)
391 PF05790 C2-set: Immunoglobuli 86.7 6.6 0.00014 25.4 7.8 50 162-221 26-76 (80)
392 PHA03052 Hypothetical protein; 83.9 5.1 0.00011 24.8 5.1 34 244-277 5-41 (69)
393 PF11465 Receptor_2B4: Natural 83.6 1.3 2.9E-05 30.2 2.8 36 85-122 61-96 (108)
394 cd05719 Ig2_PVR_like Second im 82.8 1.6 3.4E-05 29.4 3.0 22 252-273 16-38 (95)
395 PF06832 BiPBP_C: Penicillin-B 82.2 6 0.00013 26.1 5.6 42 235-277 9-54 (89)
396 PF08204 V-set_CD47: CD47 immu 82.0 2.6 5.7E-05 30.1 3.9 24 97-121 86-109 (130)
397 PHA03042 CD47-like protein; Pr 81.5 6.8 0.00015 31.7 6.4 56 65-121 33-94 (286)
398 KOG1480|consensus 80.6 0.29 6.2E-06 44.9 -1.6 134 133-279 24-173 (909)
399 KOG4597|consensus 78.3 1.8 3.8E-05 37.7 2.4 62 60-121 208-281 (560)
400 cd07703 Ig2_Nectin-2_like Seco 75.8 3.2 6.9E-05 27.9 2.7 22 252-273 16-38 (95)
401 PF03921 ICAM_N: Intercellular 74.3 23 0.00049 23.6 7.3 58 60-119 15-73 (91)
402 PHA03052 Hypothetical protein; 74.2 8 0.00017 23.9 3.8 34 141-174 5-41 (69)
403 PHA03283 envelope glycoprotein 72.0 75 0.0016 28.5 12.5 27 95-121 132-158 (542)
404 PF06832 BiPBP_C: Penicillin-B 71.8 25 0.00055 23.0 8.0 55 150-216 31-85 (89)
405 PHA03189 UL14 tegument protein 71.0 44 0.00096 27.7 8.4 29 195-223 139-167 (348)
406 PHA03283 envelope glycoprotein 70.1 83 0.0018 28.3 11.3 82 189-272 134-233 (542)
407 PHA03189 UL14 tegument protein 68.8 17 0.00036 30.0 5.6 24 97-121 134-157 (348)
408 PF06328 Lep_receptor_Ig: Ig-l 67.4 16 0.00036 24.1 4.6 36 244-279 11-51 (89)
409 PHA02914 Immunoglobulin-like d 63.3 8.7 0.00019 32.9 3.2 43 95-137 79-121 (500)
410 KOG0200|consensus 62.9 49 0.0011 30.8 8.4 111 95-210 11-138 (609)
411 KOG1026|consensus 61.8 11 0.00023 35.5 3.9 73 143-225 202-274 (774)
412 PHA03286 envelope glycoprotein 60.7 1.2E+02 0.0026 26.8 11.8 85 188-272 126-225 (492)
413 PF02440 Adeno_E3_CR1: Adenovi 58.1 27 0.00058 21.4 4.0 21 145-169 2-22 (63)
414 PF02480 Herpes_gE: Alphaherpe 56.1 18 0.00039 32.0 4.1 82 189-272 89-189 (439)
415 PF02480 Herpes_gE: Alphaherpe 56.1 20 0.00044 31.6 4.5 75 96-170 88-190 (439)
416 cd05890 Ig2_Nectin-1_like Seco 54.1 65 0.0014 21.7 5.6 58 150-212 22-87 (98)
417 PHA02865 MHC-like TNF binding 53.7 32 0.00069 29.1 5.0 21 253-273 216-238 (338)
418 PHA03286 envelope glycoprotein 51.6 84 0.0018 27.7 7.2 27 95-121 125-151 (492)
419 PHA03112 IL-18 binding protein 44.2 1.2E+02 0.0027 22.0 6.1 25 147-171 37-63 (141)
420 PHA03240 envelope glycoprotein 42.0 28 0.0006 27.1 2.7 25 182-206 98-122 (258)
421 PF03921 ICAM_N: Intercellular 40.9 1.1E+02 0.0024 20.4 10.8 80 137-225 7-87 (91)
422 PF01688 Herpes_gI: Alphaherpe 35.6 98 0.0021 23.2 4.7 32 190-221 125-156 (161)
423 PHA03281 envelope glycoprotein 33.3 3.8E+02 0.0083 24.5 10.5 81 189-272 298-394 (642)
424 PF01688 Herpes_gI: Alphaherpe 32.6 76 0.0016 23.7 3.7 24 95-118 122-145 (161)
425 PHA03281 envelope glycoprotein 30.7 4.1E+02 0.0088 24.4 8.2 26 96-121 297-322 (642)
426 PHA03282 envelope glycoprotein 30.3 4E+02 0.0088 23.9 10.2 35 190-224 125-161 (540)
427 PF09085 Adhes-Ig_like: Adhesi 27.0 1.4E+02 0.003 20.2 3.7 32 248-279 13-49 (110)
428 PF10285 Luciferase_cat: Lucif 25.1 1.2E+02 0.0026 23.8 3.7 43 11-53 199-241 (296)
429 PHA03282 envelope glycoprotein 23.4 83 0.0018 27.9 2.8 25 95-119 331-355 (540)
No 1
>KOG3513|consensus
Probab=99.98 E-value=9.4e-31 Score=235.29 Aligned_cols=244 Identities=18% Similarity=0.249 Sum_probs=199.3
Q ss_pred ccCcceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCccce-EEeec------CCC-
Q psy14060 16 KKNILKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RKITA------TET- 87 (283)
Q Consensus 16 ~~~~~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~~~~------~~~- 87 (283)
+++=.+.|+|+|..|.......+.|+..|.....+.- .++..|+.++|.|.+.|.|..+ +|+.. ..+
T Consensus 304 ~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d-----~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~ 378 (1051)
T KOG3513|consen 304 EDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQD-----TEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERD 378 (1051)
T ss_pred CCCeEEEEEEecccccceeeEEEEEecCchhhcccce-----eEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCC
Confidence 3444678999999999999999999998876655532 2466778999999999999444 44432 333
Q ss_pred --EEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCC-CCCCeEEecCCce--eecCCCcEEEEEEEeeec
Q psy14060 88 --TEMEHKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKP-AKPPVFTKKIQPC--RAFEQDQARFEVEFDGDP 161 (283)
Q Consensus 88 --~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~-~~~p~~~~~~~~~--~~~~g~~v~l~C~~~g~p 161 (283)
+.+. ...|.|.+++.+|+|.|+|.|+|..|. .....+.+ ..+|.|...+-.. .+..|..+.|.|...+.|
T Consensus 379 ~~~~i~----~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP 454 (1051)
T KOG3513|consen 379 PRYKID----DGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASP 454 (1051)
T ss_pred cceEEe----CCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCC
Confidence 4443 457999999999999999999999993 34444444 3457776665444 567799999999999999
Q ss_pred CCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEe
Q psy14060 162 LPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLT 241 (283)
Q Consensus 162 ~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~ 241 (283)
.|.++|.|++..+..+.++.+..++ +|.|.+++.+|+|.|+|.|.|..|.+.....|.|.+ ++.++.
T Consensus 455 ~p~~~W~k~~~~~~~~~r~~i~edG---tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd----------~tri~~ 521 (1051)
T KOG3513|consen 455 KPKVSWLKGGEKLLQSGRIRILEDG---TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKD----------ATRITL 521 (1051)
T ss_pred cceEEEEcCCcccccCceEEECCCC---cEEecccCcccCcEEEEEEEcccCccceEEEEEEec----------CceEEe
Confidence 9999999999877777788777666 499999999999999999999999999999999996 788988
Q ss_pred cCCceEEcCCCeEEEEEEEEeeCCC--eeEEeeCCEEecCCC
Q psy14060 242 TISSAVINVGQLARFDAKISATKPL--DVYWLKVSSLSDVKR 281 (283)
Q Consensus 242 ~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~g~~l~~~~ 281 (283)
.+....+..|++++|+|++...+.. .|.|.+||+.++...
T Consensus 522 ~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~ 563 (1051)
T KOG3513|consen 522 APSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNP 563 (1051)
T ss_pred ccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccC
Confidence 8888999999999999999877665 699999999988763
No 2
>KOG3513|consensus
Probab=99.97 E-value=1.5e-28 Score=221.30 Aligned_cols=243 Identities=20% Similarity=0.231 Sum_probs=189.2
Q ss_pred cceEEEEEcCCee---eeeeeEEEEeCCC-CCCCCCceeeecC--CeeeecCcEEEEEEEccCc--cceEEe-----ecC
Q psy14060 19 ILKSRTASSDRSG---VSTEETKIIDGRK-VSVPEPSASGVHG--KEIHTAKSQQVQKEKKGDK--EIVRKI-----TAT 85 (283)
Q Consensus 19 ~~~~~~a~n~~g~---~~~~~~l~v~~~~-~~~~~p~~~~~~~--~~v~~g~~v~l~C~~~g~~--~i~~~~-----~~~ 85 (283)
--++|.|++-.-+ ....+.|.+.... .....|.+..... .....|+.|.|+|-+.|+| .|. |. ...
T Consensus 206 ~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~-W~k~~g~~~~ 284 (1051)
T KOG3513|consen 206 GNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIK-WRKVDGKPPP 284 (1051)
T ss_pred CceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEE-EEeCCCCCCC
Confidence 4577888883222 2444556663332 2344454443322 2355688999999999999 343 22 222
Q ss_pred CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCE
Q psy14060 86 ETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT 164 (283)
Q Consensus 86 ~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~ 164 (283)
.+..... ....|.|.+++.+|+|.|+|.|.|..|. .....+.+..+|.++..+.+..+..|+.+.|.|.+.|.|.|+
T Consensus 285 ~r~~~~~--~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~ 362 (1051)
T KOG3513|consen 285 RRATYSN--YGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPT 362 (1051)
T ss_pred cceeeec--cccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCc
Confidence 3334333 4568999999999999999999999994 334566778899999999999999999999999999999999
Q ss_pred EEEEeCCEecCCCCC---eEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEe
Q psy14060 165 IKWFREDFPITSSPD---FQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLT 241 (283)
Q Consensus 165 ~~W~k~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~ 241 (283)
++|++|+.++....+ +.+.. .+|.|+++...|+|.|.|.|.|.+|...+.+.|.|.. .+|.|..
T Consensus 363 v~WlkNg~pl~~~~r~~~~~i~~----g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a---------~~P~f~~ 429 (1051)
T KOG3513|consen 363 VKWLKNGEPLEPAERDPRYKIDD----GTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLA---------SAPVFPL 429 (1051)
T ss_pred eEEeeCCeecCccCCCcceEEeC----CEEEEEecccccCeEEEeeeecccceEeeeeEEEEEc---------cCCCCCC
Confidence 999999999986554 44432 3599999999999999999999999999999999997 4688877
Q ss_pred cCCce--EEcCCCeEEEEEEEEeeCCCeeEEeeCCEEe
Q psy14060 242 TISSA--VINVGQLARFDAKISATKPLDVYWLKVSSLS 277 (283)
Q Consensus 242 ~~~~~--~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l 277 (283)
.+... .+..|..+.|.|...+.|.|.++|.++++.+
T Consensus 430 ~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~ 467 (1051)
T KOG3513|consen 430 NPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKL 467 (1051)
T ss_pred CccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCccc
Confidence 66554 6789999999999999999999999998843
No 3
>KOG4194|consensus
Probab=99.94 E-value=3.3e-26 Score=193.44 Aligned_cols=172 Identities=20% Similarity=0.348 Sum_probs=150.4
Q ss_pred EEEEEEccCCCCCCeEEEEEEEeccee--eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEe
Q psy14060 96 IQERVVDASELDDDGYYAITERKYYAL--SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFP 173 (283)
Q Consensus 96 ~~~L~i~~~~~~D~G~Y~C~a~n~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~ 173 (283)
...|.+.||+..|+|.|+|.++|.+|+ +...++.+...|.|+..|.++.+..|+.+.|.|.++|+|.|.|.|-|+|..
T Consensus 573 ~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggt 652 (873)
T KOG4194|consen 573 TAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGT 652 (873)
T ss_pred hheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCC
Confidence 567999999999999999999999995 345567788899999999999999999999999999999999999998876
Q ss_pred -cCC--CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcC
Q psy14060 174 -ITS--SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250 (283)
Q Consensus 174 -~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~ 250 (283)
.+. ..++.+..++. .+.|.+++.+|.|.|+|.|.|.+|..++.++|.|.+ .|.|..+..+..|..
T Consensus 653 dFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e----------~p~f~~PL~~~~V~~ 720 (873)
T KOG4194|consen 653 DFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE----------TPSFSIPLEDQLVVV 720 (873)
T ss_pred CCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEEec----------CCcccccccceEEEe
Confidence 322 23455554443 588999999999999999999999999999999996 678888888999999
Q ss_pred CCeEEEEEEEEeeCC-CeeEEeeCCEEecC
Q psy14060 251 GQLARFDAKISATKP-LDVYWLKVSSLSDV 279 (283)
Q Consensus 251 g~~v~L~C~~~g~p~-~~v~W~~~g~~l~~ 279 (283)
|+++.|.|.+.|.|. |...|+|+++++-.
T Consensus 721 get~vlqC~a~~~~a~pr~~W~k~d~pil~ 750 (873)
T KOG4194|consen 721 GETLVLQCLAEGAPADPRLEWFKEDKPILI 750 (873)
T ss_pred cceEEEEEecCCCCCCccccccCCCCceEE
Confidence 999999999999887 89999999887754
No 4
>KOG4221|consensus
Probab=99.93 E-value=2.2e-24 Score=194.26 Aligned_cols=240 Identities=18% Similarity=0.228 Sum_probs=179.8
Q ss_pred ceEEEEEcC-Ceee-eeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCc-c-ce-----EEeecCCCEEE
Q psy14060 20 LKSRTASSD-RSGV-STEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDK-E-IV-----RKITATETTEM 90 (283)
Q Consensus 20 ~~~~~a~n~-~g~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~-~-i~-----~~~~~~~~~~~ 90 (283)
.+.|.|+-. .|.. +....+.+...+.+...+ ....+..|+++.|.|.+.+.+ . +. .++....++.+
T Consensus 115 ~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~-----~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~ 189 (1381)
T KOG4221|consen 115 VYQCLATVEDVGSILSRTAKVALAGLADFALQP-----ESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIV 189 (1381)
T ss_pred eEEEEEEccccceeecceEEEEecccCccccCc-----cceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEE
Confidence 345555543 3332 444555555544333322 223478889999999999877 3 22 23444556666
Q ss_pred EEcCCEEEEEEccCCCCCCeEEEEEEEecce--eeeeeccCC------CCCCeEEecCCceeecCCCcEEEEEEEeeecC
Q psy14060 91 EHKGKIQERVVDASELDDDGYYAITERKYYA--LSDLSEQKP------AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPL 162 (283)
Q Consensus 91 ~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~--~~~~~~~~~------~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~ 162 (283)
.. ...|.|.+++++|.|.|+|.+++... .+....+.+ .....|+..+....+..|+.+.|.|.+.+.|.
T Consensus 190 lp---sG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~ 266 (1381)
T KOG4221|consen 190 LP---SGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPK 266 (1381)
T ss_pred cC---CCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCC
Confidence 64 45799999999999999999987754 222222222 22345677888889999999999999999999
Q ss_pred CEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEec
Q psy14060 163 PTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTT 242 (283)
Q Consensus 163 ~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~ 242 (283)
|.+.|+||+..+.-.. +++...+ ...|.|++++..|+|.|+|+|.|......+.+.+.|.. +|.|+..
T Consensus 267 p~v~Wlrng~~i~~ds-~rivl~g-~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a----------~P~~~~~ 334 (1381)
T KOG4221|consen 267 PSVKWLRNGEKISVDS-YRIVLVG-GSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLA----------PPGFTKA 334 (1381)
T ss_pred CceEEeeCCeeeeecc-eEEEEec-ccceEEeccccccCceEEEEecCCCcccccceEEEEEc----------CCCCCCC
Confidence 9999999999886543 4444332 33599999999999999999999877788888899885 7999999
Q ss_pred CCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecC
Q psy14060 243 ISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDV 279 (283)
Q Consensus 243 ~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~ 279 (283)
+......++..+.|.|.+.|.|.|.+.|+|||..+..
T Consensus 335 p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ip 371 (1381)
T KOG4221|consen 335 PTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIP 371 (1381)
T ss_pred CcceeeeeccceeEeCCCCCCCcceEEEEecCcccCc
Confidence 9999999999999999999999999999999976654
No 5
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.91 E-value=2.5e-22 Score=167.41 Aligned_cols=206 Identities=12% Similarity=0.164 Sum_probs=137.7
Q ss_pred eeecCcEEEEEEE-----ccCccce-EEeecCCC--EEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee-eeeccCC
Q psy14060 60 IHTAKSQQVQKEK-----KGDKEIV-RKITATET--TEMEHKGKIQERVVDASELDDDGYYAITERKYYALS-DLSEQKP 130 (283)
Q Consensus 60 v~~g~~v~l~C~~-----~g~~~i~-~~~~~~~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~-~~~~~~~ 130 (283)
..+|+.+.|.|.+ .|.|... .|...+.. ...... ....|.|.++..+|+|.|+|.+.|..+.. ....+.+
T Consensus 38 ~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~~~~~~-~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V 116 (326)
T PHA02785 38 ELENEPVILPCPQINTLSSGYNILDILWEKRGADNDRIIPID-NGSNMLILNPTQSDSGIYICITKNETYCDMMSLNLTI 116 (326)
T ss_pred hhcCCCEEEECCCccccccCCCCceEEEEECCCccceEEEcc-CCceEEEcccCcccCeEEEEEEECCCcceEEEEEEEE
Confidence 4467899999997 5766332 44433221 111111 22347799999999999999999997632 2222222
Q ss_pred --CCCCeEEecCCceeecCCCcEEEEEE-----EeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEE
Q psy14060 131 --AKPPVFTKKIQPCRAFEQDQARFEVE-----FDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGV 203 (283)
Q Consensus 131 --~~~p~~~~~~~~~~~~~g~~v~l~C~-----~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 203 (283)
..++.+.....+..+.+|..+.|.|. ..+.|.+.++|+++.. + ...++... ....|.|.++..+|.|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~---~~~~L~i~~v~~~d~G~ 191 (326)
T PHA02785 117 VSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQR---TPGIITIEDVRKNDAGY 191 (326)
T ss_pred EecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEec---CCCeEEEeecChhhCeE
Confidence 22333333334456778999999997 2356889999998643 2 22233222 22469999999999999
Q ss_pred EEEEEEeCCceeEE----EEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC---eeEEeeCCEE
Q psy14060 204 FAVIAENRGGKAKC----SANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL---DVYWLKVSSL 276 (283)
Q Consensus 204 Y~C~a~n~~g~~~~----~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~---~v~W~~~g~~ 276 (283)
|+|.+.|..+.... .+.|.|..+ ..||.+ ..+....+..|+.++|.|.+.|.|.+ .+.|++||+.
T Consensus 192 Y~C~~~n~~g~~~~~~t~~v~l~V~~~-------~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~ 263 (326)
T PHA02785 192 YTCVLKYIYGDKTYNVTRIVKLEVRDR-------IIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMY 263 (326)
T ss_pred EEEEEEeccCCEEEeEEEEEEEEEecc-------CCCcee-cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEE
Confidence 99999998876543 234555432 134444 44566778889999999999998864 7999999998
Q ss_pred ecC
Q psy14060 277 SDV 279 (283)
Q Consensus 277 l~~ 279 (283)
+..
T Consensus 264 i~~ 266 (326)
T PHA02785 264 YEE 266 (326)
T ss_pred CCC
Confidence 853
No 6
>KOG4222|consensus
Probab=99.89 E-value=1.6e-22 Score=181.36 Aligned_cols=236 Identities=21% Similarity=0.295 Sum_probs=185.1
Q ss_pred ceEEEEEcCCeee-eeeeEEEEeCCCC-CCCCCceeeecCCeeeecCcEEEEEEE-ccCccce-E------Eee--cCCC
Q psy14060 20 LKSRTASSDRSGV-STEETKIIDGRKV-SVPEPSASGVHGKEIHTAKSQQVQKEK-KGDKEIV-R------KIT--ATET 87 (283)
Q Consensus 20 ~~~~~a~n~~g~~-~~~~~l~v~~~~~-~~~~p~~~~~~~~~v~~g~~v~l~C~~-~g~~~i~-~------~~~--~~~~ 87 (283)
-++|.|+|..|.. +....|.+..... +-..|.- ..+..|+.+.|+|.- .|.|+.+ . .+. ...+
T Consensus 106 ~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd-----~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~ 180 (1281)
T KOG4222|consen 106 VYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRD-----VQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPI 180 (1281)
T ss_pred eeEeeecCccceeeecCceEEEEEechhcccCccc-----ccccccceeEEeccCCCCCCCCcceeecCCCcccccccee
Confidence 3688999999986 4445555544321 2222221 236678899999954 3445433 2 222 1122
Q ss_pred EEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee--eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEE
Q psy14060 88 TEMEHKGKIQERVVDASELDDDGYYAITERKYYAL--SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTI 165 (283)
Q Consensus 88 ~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~ 165 (283)
+... ....|.|.|+..+|+|.|.|++.|..+. +....+.+..+|.|...+..+.+..|..+.+.|.+.|.|.|.+
T Consensus 181 ~~li---sgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~V 257 (1281)
T KOG4222|consen 181 IALI---SGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTV 257 (1281)
T ss_pred EEEe---cCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCce
Confidence 2222 2346899999999999999999999984 5566788899999999999999999999999999999999999
Q ss_pred EEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCc
Q psy14060 166 KWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISS 245 (283)
Q Consensus 166 ~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~ 245 (283)
.|.+++..++. .++.+..+ ..+|.|.+++..|.|.|.|.+.|..|.....+.++|+. +|.|...+.+
T Consensus 258 rwkk~~~~~P~-~ry~i~~d--~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~a----------pP~f~kkp~d 324 (1281)
T KOG4222|consen 258 RWKKDDPSLPR-SRYSILDD--TQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQA----------PPSFGKKPRD 324 (1281)
T ss_pred eeeccCCCCCc-cceeeeec--cccccccccCCCcccceeeeccccccccccccceEEec----------CcccccccCc
Confidence 99997777654 34555443 34699999999999999999999999999999999995 8999999999
Q ss_pred eEEcCCCeEEEEEEEEeeCCCeeEEeeCCEE
Q psy14060 246 AVINVGQLARFDAKISATKPLDVYWLKVSSL 276 (283)
Q Consensus 246 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~ 276 (283)
..+..|..++|.|.+.|+|.|.+.|.+.|..
T Consensus 325 q~v~lg~~vt~pc~~~gnP~PavfW~keg~q 355 (1281)
T KOG4222|consen 325 QKVALGGTVTFPCETLGNPPPAVFWLKEGSQ 355 (1281)
T ss_pred cccccCceEEeeeecCCCCCcceEEeccCcc
Confidence 9999999999999999999999999997754
No 7
>KOG4194|consensus
Probab=99.85 E-value=3.3e-20 Score=157.42 Aligned_cols=196 Identities=16% Similarity=0.286 Sum_probs=149.5
Q ss_pred eEEEEEcCCeee-eeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCc--cce-EEe-----e--cCCCEE
Q psy14060 21 KSRTASSDRSGV-STEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDK--EIV-RKI-----T--ATETTE 89 (283)
Q Consensus 21 ~~~~a~n~~g~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~--~i~-~~~-----~--~~~~~~ 89 (283)
+-|+++|.-|.. +...+|+|...|.+...|.- ..+..|+.++|.|.+.|.| +|. +.. . ...|..
T Consensus 589 YQCVvtN~FGStysqk~KltV~~~PsFtktP~d-----ltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~ 663 (873)
T KOG4194|consen 589 YQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPED-----LTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLH 663 (873)
T ss_pred EEEEEecccCcchhheeEEEeeccCccccCccc-----ceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheee
Confidence 459999999986 77888999886655444432 2477888999999999999 554 111 1 112333
Q ss_pred EEEcCCEEEEEEccCCCCCCeEEEEEEEecce-eeeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecC-CEEEE
Q psy14060 90 MEHKGKIQERVVDASELDDDGYYAITERKYYA-LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPL-PTIKW 167 (283)
Q Consensus 90 ~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~-~~~~W 167 (283)
+.. ..-.+.|.|++.+|+|.|+|.|.|..| .+....+.+...|.+..+..+..+..|+++.|.|...+.|. |.+.|
T Consensus 664 Vmp--edd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W 741 (873)
T KOG4194|consen 664 VMP--EDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEW 741 (873)
T ss_pred ecC--CCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccc
Confidence 333 344678999999999999999999998 46666777888888998999999999999999999999877 99999
Q ss_pred EeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060 168 FREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225 (283)
Q Consensus 168 ~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 225 (283)
+|+++++.-..+..+. ....-|.+.....+|+|.|+|...+..|.......+.+..
T Consensus 742 ~k~d~pil~t~rh~f~--d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~ 797 (873)
T KOG4194|consen 742 FKEDKPILITERHTFP--DGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQ 797 (873)
T ss_pred cCCCCceEEeecccCC--CCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEee
Confidence 9999887544433222 2223478888889999999999999988876666555543
No 8
>KOG4222|consensus
Probab=99.85 E-value=5.5e-21 Score=171.72 Aligned_cols=246 Identities=16% Similarity=0.191 Sum_probs=191.0
Q ss_pred eEEEEEcCCeee-eeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCccce-EEee-----cCCCEEEEEc
Q psy14060 21 KSRTASSDRSGV-STEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RKIT-----ATETTEMEHK 93 (283)
Q Consensus 21 ~~~~a~n~~g~~-~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~~~-----~~~~~~~~~~ 93 (283)
+.|+|+|-.|.. +....|.|.+.+....+|... .+.+|+.+.|.|.+.|+|... ++.. ...++.+..
T Consensus 202 Y~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~-----~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~- 275 (1281)
T KOG4222|consen 202 YACVATNMVGERESIPARLSVQEKPWFWKRPKDL-----AVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILD- 275 (1281)
T ss_pred eeeeecccccccccccceeeeccCCccccccccc-----eeecccccccccccCCCCCCceeeeccCCCCCccceeeee-
Confidence 578999999987 555778888876655555433 366778899999999999444 2222 234555553
Q ss_pred CCEEEEEEccCCCCCCeEEEEEEEecce-eeeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCE
Q psy14060 94 GKIQERVVDASELDDDGYYAITERKYYA-LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDF 172 (283)
Q Consensus 94 ~~~~~L~i~~~~~~D~G~Y~C~a~n~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~ 172 (283)
.+.+|.|.+++..|.|.|.|.+.|..+ ......+++..+|.|...+.+..+..|..++|.|.+.|.|.|.+.|.+.+.
T Consensus 276 -d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~ 354 (1281)
T KOG4222|consen 276 -DTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGS 354 (1281)
T ss_pred -ccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCc
Confidence 457899999999999999999999988 566667888999999999999999999999999999999999999999875
Q ss_pred ecC--------CCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCC
Q psy14060 173 PIT--------SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTIS 244 (283)
Q Consensus 173 ~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~ 244 (283)
.-. ...+..+...+ +|.|.++...|.|.|.|...+..+.....+.+.+....... ..+|.+...+.
T Consensus 355 q~llf~~~p~~~~~r~svs~~g---~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~---rPpp~i~~g~~ 428 (1281)
T KOG4222|consen 355 QDLLFSASPPSSNGRGSVSPTG---TLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDS---RPPPIIEQGPA 428 (1281)
T ss_pred ceecccCCCCCcCccceecCCC---CcccccccccccceEeecccccccccccceeEEEEeeeccC---CCCceeeeccc
Confidence 421 12233333333 69999999999999999998888887777666655421110 13566777788
Q ss_pred ceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecC
Q psy14060 245 SAVINVGQLARFDAKISATKPLDVYWLKVSSLSDV 279 (283)
Q Consensus 245 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~ 279 (283)
.+++.+|..+.|.|.+.|.|.|.+.|+++|-.+..
T Consensus 429 nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~ 463 (1281)
T KOG4222|consen 429 NQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMN 463 (1281)
T ss_pred ccccccCcccccChhhhCCCCCCchhhhccccccc
Confidence 88888999999999999999999999999866543
No 9
>KOG4221|consensus
Probab=99.83 E-value=8.6e-20 Score=165.06 Aligned_cols=253 Identities=17% Similarity=0.156 Sum_probs=175.9
Q ss_pred CcceEEEEEcCCeee-eeeeEEEEeCCCCCCCCCceeeecC-CeeeecCcEEEEEEEccCccce-EEeecCCCEEEEE--
Q psy14060 18 NILKSRTASSDRSGV-STEETKIIDGRKVSVPEPSASGVHG-KEIHTAKSQQVQKEKKGDKEIV-RKITATETTEMEH-- 92 (283)
Q Consensus 18 ~~~~~~~a~n~~g~~-~~~~~l~v~~~~~~~~~p~~~~~~~-~~v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~~~~~-- 92 (283)
.=.+.|.|+|...+. +-...|.|...+.......|...+. ..+..|+.+.|+|.+.|.|... +|+..+..+.++.
T Consensus 205 ~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~r 284 (1381)
T KOG4221|consen 205 TGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYR 284 (1381)
T ss_pred CceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceE
Confidence 345789999976654 5556778876555444444443322 2477789999999999999433 5555443333321
Q ss_pred --cCCEEEEEEccCCCCCCeEEEEEEEecce-eeeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEe
Q psy14060 93 --KGKIQERVVDASELDDDGYYAITERKYYA-LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFR 169 (283)
Q Consensus 93 --~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k 169 (283)
-.+...|.|.+++..|+|.|+|.|.|... ..+...+.+..+|.|+..+..+...++..+.|.|.+.|.|.|.+.|||
T Consensus 285 ivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~k 364 (1381)
T KOG4221|consen 285 IVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYK 364 (1381)
T ss_pred EEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEe
Confidence 11356789999999999999999999543 334456777778999999999999999999999999999999999999
Q ss_pred CCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEc
Q psy14060 170 EDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVIN 249 (283)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~ 249 (283)
+|..+.++.++++...+. |.|..+...|.|.|.|.+.|..|.....+.+.+....... ....+...+.++.+.
T Consensus 365 Ngd~~ipsdy~ki~~~~~---lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~----~s~~~~sap~~lv~~ 437 (1381)
T KOG4221|consen 365 NGDRIIPSDYFKIVGGGN---LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASA----SSDLLPSAPRDLVAN 437 (1381)
T ss_pred cCcccCcccceEecCCCC---cEEEEEecccchhhhhhhccCcccccchhhheeccCCccc----ccCccccCCcceecc
Confidence 999888777777765544 8888888999999999999999999988888655321111 112222233333333
Q ss_pred CCCeEEEEEEE-----EeeCCCeeEEee-CCEEe
Q psy14060 250 VGQLARFDAKI-----SATKPLDVYWLK-VSSLS 277 (283)
Q Consensus 250 ~g~~v~L~C~~-----~g~p~~~v~W~~-~g~~l 277 (283)
.-.+..+.|.. .+.+.+.++|++ ++...
T Consensus 438 ~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~ 471 (1381)
T KOG4221|consen 438 LVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDV 471 (1381)
T ss_pred cccceeEEEeecCccccCCCcceEEEEEecCCch
Confidence 33343444443 233556788875 44443
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.81 E-value=9.6e-18 Score=139.94 Aligned_cols=188 Identities=11% Similarity=0.055 Sum_probs=124.7
Q ss_pred ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEE-----ccCccce-EEee----cCCCEE
Q psy14060 20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEK-----KGDKEIV-RKIT----ATETTE 89 (283)
Q Consensus 20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~-----~g~~~i~-~~~~----~~~~~~ 89 (283)
.+.|+|.|..|..+....|.|......... +.. ....+.+|..+.|.|.. .+++.+. .|.. ...++.
T Consensus 96 ~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~--~~~-~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~ 172 (326)
T PHA02785 96 IYICITKNETYCDMMSLNLTIVSVSESNID--LIS-YPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRRLRNKRLK 172 (326)
T ss_pred EEEEEEECCCcceEEEEEEEEEecCCCccc--eee-ccceecccCcEEEECCChhhcccCCCCceEEEccCCccCCcceE
Confidence 488999999998888888888764221111 111 12236678889999972 3455332 3321 122322
Q ss_pred EEEcCCEEEEEEccCCCCCCeEEEEEEEecceeee-----eeccCC---CCCCeEEecCCceeecCCCcEEEEEEEeeec
Q psy14060 90 MEHKGKIQERVVDASELDDDGYYAITERKYYALSD-----LSEQKP---AKPPVFTKKIQPCRAFEQDQARFEVEFDGDP 161 (283)
Q Consensus 90 ~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~-----~~~~~~---~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p 161 (283)
.. ....|.|.+++.+|+|.|+|.+.|..+... ...+.+ ..||.+ ..+....+..|+.+.|.|.+.|.|
T Consensus 173 ~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P 248 (326)
T PHA02785 173 QR---TPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGSNLTIACRVSLRP 248 (326)
T ss_pred ec---CCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCCCcEEEEEEEECCC
Confidence 21 234799999999999999999998766321 112222 234443 345667788899999999999887
Q ss_pred C---CEEEEEeCCEecCCCC---CeEEEEeC----------CEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060 162 L---PTIKWFREDFPITSSP---DFQIHTFS----------TKSILIMRQVFMEDSGVFAVIAENRGGK 214 (283)
Q Consensus 162 ~---~~~~W~k~~~~~~~~~---~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 214 (283)
. +.+.|++||..+.... ..++.... ....|.|.++..+|.|.|+|.|.|..+.
T Consensus 249 ~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~ 317 (326)
T PHA02785 249 PTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSI 317 (326)
T ss_pred CCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence 6 4899999999875421 11211111 1357999999999999999999998744
No 11
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.79 E-value=9.2e-18 Score=131.98 Aligned_cols=109 Identities=11% Similarity=0.093 Sum_probs=83.2
Q ss_pred EEEEEEccCCCCCCeEEEEEEEecceee-eeeccCCCCCCeEEecCCceeecCCCcEEEEEEEee-----ecCCEEEEEe
Q psy14060 96 IQERVVDASELDDDGYYAITERKYYALS-DLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDG-----DPLPTIKWFR 169 (283)
Q Consensus 96 ~~~L~i~~~~~~D~G~Y~C~a~n~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g-----~p~~~~~W~k 169 (283)
...|.|.+++.+|+|.|+|.+.|..+.. ....+.+..+ ..+..+..|+.+.|.|.+.+ .|.|.++|+|
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyK 170 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSG------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYK 170 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecC------CccceEecCCCEEEEeeCCCCccccCCCceEEEEE
Confidence 4589999999999999999999977642 2222333211 23456778999999999853 3578999999
Q ss_pred CCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060 170 EDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG 212 (283)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 212 (283)
++..+....++.+.. ....|.|.++..+|+|.|+|.+....
T Consensus 171 ng~~l~~~~r~~~~~--~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 171 NGNIVLYTDRIQLRN--NNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred CCEECCCCCCEEEeC--CCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 999987666655432 33479999999999999999998764
No 12
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.77 E-value=1.8e-17 Score=113.60 Aligned_cols=93 Identities=18% Similarity=0.264 Sum_probs=85.0
Q ss_pred CeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG 213 (283)
Q Consensus 134 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 213 (283)
|.|...+....+..|+.+.|.|.+.|.|.+.+.|+|++..+....++.+......+.|.|.++..+|+|.|+|.+.|..|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence 56777888899999999999999999999999999999999877777777767778899999999999999999999999
Q ss_pred eeEEEEEEEEEec
Q psy14060 214 KAKCSANLVVEEK 226 (283)
Q Consensus 214 ~~~~~~~l~v~~~ 226 (283)
...+.+.|.|.++
T Consensus 81 ~~~~~~~l~V~~~ 93 (98)
T cd05762 81 SRQAQVNLTVVDK 93 (98)
T ss_pred ceeEEEEEEEecC
Confidence 9999999999874
No 13
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.70 E-value=6.5e-16 Score=104.96 Aligned_cols=90 Identities=34% Similarity=0.540 Sum_probs=79.9
Q ss_pred CCCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR 211 (283)
Q Consensus 132 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 211 (283)
.||.+...+....+..|+.+.|.|.+.|.|.|.+.|+|++..+....++.+......+.|.|.++..+|+|.|.|.+.|.
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence 36778888888999999999999999999999999999999887767777776666778999999999999999999999
Q ss_pred CceeEEEEEE
Q psy14060 212 GGKAKCSANL 221 (283)
Q Consensus 212 ~g~~~~~~~l 221 (283)
.|.....+.|
T Consensus 82 ~G~~~~~~~l 91 (92)
T cd05747 82 EGKQEAQFTL 91 (92)
T ss_pred CCCEeEEEEe
Confidence 9988877665
No 14
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.69 E-value=3.8e-16 Score=104.96 Aligned_cols=87 Identities=25% Similarity=0.413 Sum_probs=74.6
Q ss_pred CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG 212 (283)
Q Consensus 133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 212 (283)
+|.+...+.+..+..|+.+.|.|.+.|.|.|.++|+|++..+....++ .. ....|.|.++..+|+|.|.|.|.|..
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~A~N~~ 76 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEI--SM--SGAVLKIFNIQPEDEGTYECEAENIK 76 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEE--ec--CCCEEEECcCChhhCEEEEEEEEcCC
Confidence 577888889999999999999999999999999999999877654322 22 22369999999999999999999999
Q ss_pred ceeEEEEEEEE
Q psy14060 213 GKAKCSANLVV 223 (283)
Q Consensus 213 g~~~~~~~l~v 223 (283)
|.....+.|.|
T Consensus 77 G~~~~~~~l~V 87 (88)
T cd05851 77 GKDKHQARVYV 87 (88)
T ss_pred CceEEEEEEEE
Confidence 99998888876
No 15
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.68 E-value=1.7e-15 Score=102.56 Aligned_cols=90 Identities=38% Similarity=0.646 Sum_probs=83.5
Q ss_pred CeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG 213 (283)
Q Consensus 134 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 213 (283)
|.|...+.+..+..|+++.|.|.+.+.|.+.+.|++++..+....++.+......+.|.|.++..+|+|.|+|.+.|..|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence 56778888999999999999999999999999999999999988888888888899999999999999999999999999
Q ss_pred eeEEEEEEEE
Q psy14060 214 KAKCSANLVV 223 (283)
Q Consensus 214 ~~~~~~~l~v 223 (283)
.....+.|.|
T Consensus 81 ~~~~~~~l~V 90 (90)
T PF07679_consen 81 EATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEC
Confidence 9998888765
No 16
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.66 E-value=3.6e-15 Score=99.63 Aligned_cols=82 Identities=23% Similarity=0.447 Sum_probs=71.2
Q ss_pred ceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCC-CCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060 142 PCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS-PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN 220 (283)
Q Consensus 142 ~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 220 (283)
.+.+..|+.+.|.|.+.|.|.|.+.|+|++..+... .++.+......+.|.|.++..+|+|.|+|.|.|..|.......
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 457889999999999999999999999999998653 4566666666778999999999999999999999999888777
Q ss_pred EEE
Q psy14060 221 LVV 223 (283)
Q Consensus 221 l~v 223 (283)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 654
No 17
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.66 E-value=3.3e-15 Score=101.42 Aligned_cols=84 Identities=20% Similarity=0.397 Sum_probs=71.6
Q ss_pred CCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEE
Q psy14060 140 IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF-STKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 218 (283)
Q Consensus 140 ~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 218 (283)
+....+.+|+++.|.|.+.|.|.|.+.|+|++..+....++.+... +....|.|.++..+|+|.|+|.|.|..|.....
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVD 87 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEE
Confidence 3456788999999999999999999999999999877666666544 345679999999999999999999999998887
Q ss_pred EEEEE
Q psy14060 219 ANLVV 223 (283)
Q Consensus 219 ~~l~v 223 (283)
+.+.|
T Consensus 88 ~~v~v 92 (92)
T cd05737 88 VTVSV 92 (92)
T ss_pred EEEeC
Confidence 77653
No 18
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.64 E-value=3.5e-15 Score=96.64 Aligned_cols=73 Identities=26% Similarity=0.436 Sum_probs=61.8
Q ss_pred EEEEEEEeeecCCEEEEEeCCEecCC-CCCeEEEEeC-CEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060 151 ARFEVEFDGDPLPTIKWFREDFPITS-SPDFQIHTFS-TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223 (283)
Q Consensus 151 v~l~C~~~g~p~~~~~W~k~~~~~~~-~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 223 (283)
+.|.|.+.|.|.|.+.|+|++..+.. ..++.+...+ ...+|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 47999999999999999999998874 3456555433 3357999999999999999999999999999988864
No 19
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.64 E-value=5.2e-15 Score=116.45 Aligned_cols=124 Identities=13% Similarity=0.106 Sum_probs=90.7
Q ss_pred CceeecCCCcEEEEEEEeeec-----------CCEEEEEeCCEec--CC-CCC---eEEE---EeCCEEEEEEcCCCCCC
Q psy14060 141 QPCRAFEQDQARFEVEFDGDP-----------LPTIKWFREDFPI--TS-SPD---FQIH---TFSTKSILIMRQVFMED 200 (283)
Q Consensus 141 ~~~~~~~g~~v~l~C~~~g~p-----------~~~~~W~k~~~~~--~~-~~~---~~~~---~~~~~~~l~i~~~~~~d 200 (283)
....+.+|+++.|.|.+.++| .+.+.|+|++... .. +.+ ..+. ...+...|.|.++..+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 456788999999999987644 3589999987642 11 111 0000 01224579999999999
Q ss_pred CEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEE-----eeCCCeeEEeeCCE
Q psy14060 201 SGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKIS-----ATKPLDVYWLKVSS 275 (283)
Q Consensus 201 ~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~-----g~p~~~v~W~~~g~ 275 (283)
+|.|.|.+.|..+.......|.|.. ++ .+..+.+|+.+.|.|.+. +.|.|+++|+|||+
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~----------~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~ 173 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDS----------GT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGN 173 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEec----------CC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCE
Confidence 9999999999888877777777753 11 234567899999999985 34578999999999
Q ss_pred EecCC
Q psy14060 276 LSDVK 280 (283)
Q Consensus 276 ~l~~~ 280 (283)
+|...
T Consensus 174 ~l~~~ 178 (227)
T PHA02826 174 IVLYT 178 (227)
T ss_pred ECCCC
Confidence 98643
No 20
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.63 E-value=1.1e-14 Score=98.39 Aligned_cols=85 Identities=20% Similarity=0.303 Sum_probs=70.8
Q ss_pred cCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEE
Q psy14060 139 KIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 218 (283)
Q Consensus 139 ~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 218 (283)
.+....+..|+.+.|.|.+.|.|.|.+.|++++..+................|.|.++..+|.|.|.|.|.|..|.....
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~ 85 (90)
T cd04972 6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVS 85 (90)
T ss_pred CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEE
Confidence 44556688999999999999999999999999998765444333333456689999999999999999999999998888
Q ss_pred EEEEE
Q psy14060 219 ANLVV 223 (283)
Q Consensus 219 ~~l~v 223 (283)
+.|.|
T Consensus 86 ~~L~v 90 (90)
T cd04972 86 VQVTV 90 (90)
T ss_pred EEEeC
Confidence 87754
No 21
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.63 E-value=3.1e-15 Score=96.58 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=63.6
Q ss_pred CCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060 148 QDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223 (283)
Q Consensus 148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 223 (283)
|+.+.|.|.+.|.|.|.+.|+|++..+....++.+... .+|.|.++..+|.|.|.|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDD---GSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCC---CEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 67899999999999999999999998876666665433 36999999999999999999999999999888764
No 22
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.63 E-value=8.5e-15 Score=100.51 Aligned_cols=84 Identities=17% Similarity=0.233 Sum_probs=70.0
Q ss_pred CceeecCCCcEEEEEEEee-ecCCEEEEEeCCEecCCCCCeEEEEeC-----CEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060 141 QPCRAFEQDQARFEVEFDG-DPLPTIKWFREDFPITSSPDFQIHTFS-----TKSILIMRQVFMEDSGVFAVIAENRGGK 214 (283)
Q Consensus 141 ~~~~~~~g~~v~l~C~~~g-~p~~~~~W~k~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 214 (283)
..+.+..|+++.|.|.+.| .|.|.+.|+|+|..+.......+.... ..+.|.|..+..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 4567889999999999999 889999999999999765443333221 2467999999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy14060 215 AKCSANLVVE 224 (283)
Q Consensus 215 ~~~~~~l~v~ 224 (283)
....+.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 8888888775
No 23
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.62 E-value=1.2e-14 Score=94.51 Aligned_cols=74 Identities=28% Similarity=0.536 Sum_probs=65.5
Q ss_pred cEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060 150 QARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223 (283)
Q Consensus 150 ~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 223 (283)
.+.|.|.+.|.|.|.+.|+|++..+....++.+......+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 36899999999999999999999987766777766667788999999999999999999999999888877754
No 24
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.62 E-value=4.4e-15 Score=96.49 Aligned_cols=74 Identities=24% Similarity=0.384 Sum_probs=63.2
Q ss_pred CCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060 147 EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223 (283)
Q Consensus 147 ~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 223 (283)
+|+.+.|.|.+.|.|.|.++|+|++..+....++.+.. ..+|.|.++..+|.|.|.|.|.|..|.....+.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLS---SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEcc---CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 58899999999999999999999999887655444332 236999999999999999999999999988888764
No 25
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.62 E-value=2e-14 Score=98.60 Aligned_cols=91 Identities=24% Similarity=0.334 Sum_probs=71.7
Q ss_pred CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCC-----CCeEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy14060 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS-----PDFQIHTFSTKSILIMRQVFMEDSGVFAVI 207 (283)
Q Consensus 133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 207 (283)
+|.|...+....+..|+.++|.|.+.|.|.|.++|++++..+... .++.+......+.|.|.++..+|+|.|.|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 466666655555666899999999999999999999998776432 123333334456899999999999999999
Q ss_pred EEeCCceeEEEEEEEE
Q psy14060 208 AENRGGKAKCSANLVV 223 (283)
Q Consensus 208 a~n~~g~~~~~~~l~v 223 (283)
|.|..|.....+.|.|
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999999988888764
No 26
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.61 E-value=8.1e-15 Score=97.92 Aligned_cols=84 Identities=27% Similarity=0.506 Sum_probs=71.1
Q ss_pred EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060 136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA 215 (283)
Q Consensus 136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 215 (283)
|...+.+..+..|+.+.|.|.+.|.|.|.+.|+|++..+....++... ...|.|.++..+|+|.|+|.|.|..|..
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 77 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE----AGDLRITKLSLSDSGMYQCVAENKHGTI 77 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe----CCEEEEeeCCHHHCEEEEEEEECCCCeE
Confidence 345667788999999999999999999999999999998765554432 2369999999999999999999999998
Q ss_pred EEEEEEEE
Q psy14060 216 KCSANLVV 223 (283)
Q Consensus 216 ~~~~~l~v 223 (283)
.+++.|.|
T Consensus 78 ~~~~~l~V 85 (85)
T cd05728 78 YASAELAV 85 (85)
T ss_pred EEEEEEEC
Confidence 88887764
No 27
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.61 E-value=1.7e-14 Score=97.08 Aligned_cols=87 Identities=25% Similarity=0.415 Sum_probs=71.9
Q ss_pred CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG 212 (283)
Q Consensus 133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 212 (283)
|+.+...+....+..|+.+.|.|.+.|.|.|.+.|+|++..+....... .....|.|.++..+|+|.|+|.+.|..
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~ 76 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGAVLKIPNIQFEDEGTYECEAENIK 76 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCCEEEECCCCcccCEEEEEEEEECC
Confidence 4556667778888999999999999999999999999887665433222 123479999999999999999999999
Q ss_pred ceeEEEEEEEE
Q psy14060 213 GKAKCSANLVV 223 (283)
Q Consensus 213 g~~~~~~~l~v 223 (283)
|.....+.|.|
T Consensus 77 G~~~~~~~l~V 87 (88)
T cd04968 77 GKDTHQGRIYV 87 (88)
T ss_pred CcEEEEEEEEE
Confidence 99988888876
No 28
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.61 E-value=1.4e-14 Score=93.91 Aligned_cols=73 Identities=30% Similarity=0.500 Sum_probs=61.1
Q ss_pred EEEEEEEeeecCCEEEEEeCCEecCCC-CCeEEEEeC-CEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060 151 ARFEVEFDGDPLPTIKWFREDFPITSS-PDFQIHTFS-TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223 (283)
Q Consensus 151 v~l~C~~~g~p~~~~~W~k~~~~~~~~-~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 223 (283)
+.|.|.+.|.|.|.+.|+|++..+... .++.+...+ ....|.|.++..+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 479999999999999999999988653 345554433 2346999999999999999999999999999888764
No 29
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.61 E-value=2.1e-14 Score=92.45 Aligned_cols=71 Identities=32% Similarity=0.527 Sum_probs=60.9
Q ss_pred cEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060 150 QARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223 (283)
Q Consensus 150 ~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 223 (283)
.+.|.|.+.|.|.|.++|+|++..+....++.+...+ .|.|.++..+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 4789999999999999999999988776666655443 3788899999999999999999999998888764
No 30
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.60 E-value=2.5e-14 Score=98.32 Aligned_cols=90 Identities=22% Similarity=0.392 Sum_probs=70.8
Q ss_pred CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeC--CEecCC-----CCCeEEEEeCCEEEEEEcCCCCCCCEEEE
Q psy14060 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFPITS-----SPDFQIHTFSTKSILIMRQVFMEDSGVFA 205 (283)
Q Consensus 133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~--~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 205 (283)
+|.+. .+.+..+.+|+.++|.|.+.|.|.|.+.|+|+ +..+.. ..++.+........|.|.++..+|+|.|+
T Consensus 2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 2 QPHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CCEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 56554 46778899999999999999999999999994 333321 12445444444568999999999999999
Q ss_pred EEEEeCCceeEEEEEEEE
Q psy14060 206 VIAENRGGKAKCSANLVV 223 (283)
Q Consensus 206 C~a~n~~g~~~~~~~l~v 223 (283)
|.|.|..|....++.|.|
T Consensus 81 C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 81 CEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEeccCCcceeEEEEeC
Confidence 999999999888777753
No 31
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.60 E-value=3.6e-14 Score=97.00 Aligned_cols=82 Identities=24% Similarity=0.359 Sum_probs=68.9
Q ss_pred ceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCC-CCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060 142 PCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS-PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN 220 (283)
Q Consensus 142 ~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 220 (283)
...+..|+.+.|.|.+.|.|.|.+.|++++..+... .++.. ....+.|.|.++..+|.|.|+|.|.|..|.....+.
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSF--NEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIH 89 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEE--eCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence 346789999999999999999999999999988654 33322 233457999999999999999999999999998888
Q ss_pred EEEEe
Q psy14060 221 LVVEE 225 (283)
Q Consensus 221 l~v~~ 225 (283)
|.|..
T Consensus 90 L~V~~ 94 (95)
T cd05730 90 LKVFA 94 (95)
T ss_pred EEEEe
Confidence 88763
No 32
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.59 E-value=2.4e-14 Score=98.43 Aligned_cols=83 Identities=20% Similarity=0.290 Sum_probs=68.7
Q ss_pred ceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEE------eCCEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060 142 PCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHT------FSTKSILIMRQVFMEDSGVFAVIAENRGGKA 215 (283)
Q Consensus 142 ~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 215 (283)
...+..|+.+.|.|.+.|+|.|.+.|+|++.++.......... ....+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 4577888999999999999999999999999987654322211 1123579999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy14060 216 KCSANLVVE 224 (283)
Q Consensus 216 ~~~~~l~v~ 224 (283)
..++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 988888775
No 33
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.59 E-value=3.3e-14 Score=93.33 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=65.5
Q ss_pred CCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060 148 QDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223 (283)
Q Consensus 148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 223 (283)
|+++.|.|.+.|.|.|.+.|++++..+....++.+........|.|.++..+|+|.|+|.|.|..|...+.+.+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 6789999999999999999999998887766776666666678999999999999999999999998877655443
No 34
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.58 E-value=5.5e-14 Score=95.67 Aligned_cols=86 Identities=15% Similarity=0.303 Sum_probs=67.7
Q ss_pred ecCCceeecCCCcEEEEEEEeeecC-CEEEEEe-CCEecCC-CCCeEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEeCC-
Q psy14060 138 KKIQPCRAFEQDQARFEVEFDGDPL-PTIKWFR-EDFPITS-SPDFQIHTF-STKSILIMRQVFMEDSGVFAVIAENRG- 212 (283)
Q Consensus 138 ~~~~~~~~~~g~~v~l~C~~~g~p~-~~~~W~k-~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~- 212 (283)
..+....+..|+++.|.|.+.|.|. |.++|++ ++..+.. ..++.+... ...++|.|.++..+|+|.|+|.|.|..
T Consensus 5 ~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~ 84 (96)
T cd05865 5 IVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDE 84 (96)
T ss_pred EeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCC
Confidence 3456667899999999999999985 7999998 6766554 334444332 235689999999999999999999997
Q ss_pred ceeEEEEEEEE
Q psy14060 213 GKAKCSANLVV 223 (283)
Q Consensus 213 g~~~~~~~l~v 223 (283)
|....++.|.|
T Consensus 85 g~~~~s~~l~v 95 (96)
T cd05865 85 GESEATVNVKI 95 (96)
T ss_pred CcEEEEEEEEE
Confidence 77888777765
No 35
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.58 E-value=8.2e-14 Score=93.89 Aligned_cols=85 Identities=19% Similarity=0.328 Sum_probs=69.1
Q ss_pred EecCCceeecCCCcEEEEEEEeeecCCEEEEEe-CCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060 137 TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFR-EDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA 215 (283)
Q Consensus 137 ~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 215 (283)
...+.+..+..|+++.|.|.+.|.|. .+.|++ ++..+....++.+...+....|.|.++..+|+|.|+|.|.|..|..
T Consensus 4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 34566788999999999999999887 999998 4667766667777666666789999999999999999999999875
Q ss_pred E-EEEEEE
Q psy14060 216 K-CSANLV 222 (283)
Q Consensus 216 ~-~~~~l~ 222 (283)
. .+..|.
T Consensus 83 ~~~~i~l~ 90 (92)
T cd05866 83 QEATVVLE 90 (92)
T ss_pred EEEEEEEE
Confidence 4 344443
No 36
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.58 E-value=6.7e-14 Score=94.84 Aligned_cols=84 Identities=21% Similarity=0.370 Sum_probs=70.4
Q ss_pred CCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeC-CEEEEEEcCCCCCCCEEEEEEEEeCCceeEEE
Q psy14060 140 IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS-TKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 218 (283)
Q Consensus 140 ~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 218 (283)
+..+.+.+|+.+.|.|.+.|.|.|.+.||+++..+....++.+.... ....|.|.++..+|+|.|+|.|.|..|.....
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD 87 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence 44678899999999999999999999999999988766665554332 34579999999999999999999999998887
Q ss_pred EEEEE
Q psy14060 219 ANLVV 223 (283)
Q Consensus 219 ~~l~v 223 (283)
+.|.|
T Consensus 88 ~~v~~ 92 (92)
T cd05891 88 VTVSV 92 (92)
T ss_pred EEEEC
Confidence 77653
No 37
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.58 E-value=4.8e-14 Score=96.65 Aligned_cols=90 Identities=28% Similarity=0.419 Sum_probs=71.3
Q ss_pred CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCC-----CCeEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy14060 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS-----PDFQIHTFSTKSILIMRQVFMEDSGVFAVI 207 (283)
Q Consensus 133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 207 (283)
+|.+. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++.+......+.|.|.++..+|+|.|.|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 45554 455678899999999999999999999999998665432 123333334456899999999999999999
Q ss_pred EEeCCceeEEEEEEEE
Q psy14060 208 AENRGGKAKCSANLVV 223 (283)
Q Consensus 208 a~n~~g~~~~~~~l~v 223 (283)
|.|..|....++.|.|
T Consensus 81 a~N~~G~~~~s~~l~v 96 (96)
T cd05732 81 ASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEeCCCCcEEEEEEeC
Confidence 9999999888777754
No 38
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.58 E-value=4.3e-14 Score=91.89 Aligned_cols=73 Identities=26% Similarity=0.411 Sum_probs=60.9
Q ss_pred EEEEEEEeeecCCEEEEEeCCEecCC-CCCeEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060 151 ARFEVEFDGDPLPTIKWFREDFPITS-SPDFQIHTF-STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223 (283)
Q Consensus 151 v~l~C~~~g~p~~~~~W~k~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 223 (283)
+.|.|.+.|.|.|.+.|+|++..+.. ..++.+... .....|.|.++..+|+|.|+|.|.|..|...+.+.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 47999999999999999999998874 345555433 23457999999999999999999999999998888764
No 39
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.57 E-value=8.4e-14 Score=93.48 Aligned_cols=79 Identities=24% Similarity=0.329 Sum_probs=66.3
Q ss_pred CCcEEEEEEEeeecCCEEEEEeCCEecCCC-CCeEEEEe----CCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEE
Q psy14060 148 QDQARFEVEFDGDPLPTIKWFREDFPITSS-PDFQIHTF----STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV 222 (283)
Q Consensus 148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~-~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 222 (283)
|+.+.|.|.+.|.|.+.+.|+|++..+... .++.+... ...+.|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 688999999999999999999999887543 35544321 2236799999999999999999999999999999999
Q ss_pred EEec
Q psy14060 223 VEEK 226 (283)
Q Consensus 223 v~~~ 226 (283)
|..+
T Consensus 81 V~~~ 84 (88)
T cd05735 81 VQEP 84 (88)
T ss_pred EeCC
Confidence 9863
No 40
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.57 E-value=3.1e-14 Score=89.74 Aligned_cols=65 Identities=15% Similarity=0.375 Sum_probs=55.4
Q ss_pred EEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060 151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223 (283)
Q Consensus 151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 223 (283)
+.|.|.+.|.|.|.++|||+|..+... .....|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 479999999999999999999988632 13347999999999999999999999998777766655
No 41
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.57 E-value=6.4e-14 Score=91.37 Aligned_cols=74 Identities=23% Similarity=0.357 Sum_probs=61.0
Q ss_pred CCcEEEEEEEeeecCCEEEEEeCCEecCCCCCe-EEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060 148 QDQARFEVEFDGDPLPTIKWFREDFPITSSPDF-QIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223 (283)
Q Consensus 148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 223 (283)
|+.+.|.|.+.|.|.|.++|+|++..+...... ..... ...|.|.++..+|.|.|.|.|.|..|...+++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~--~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVD--GDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEec--CCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 678999999999999999999999988643221 11122 236899999999999999999999999999998876
No 42
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.56 E-value=8.5e-14 Score=90.90 Aligned_cols=74 Identities=28% Similarity=0.476 Sum_probs=61.0
Q ss_pred CCcEEEEEEEeeecCCEEEEEeCCEecCCCCCe-EEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060 148 QDQARFEVEFDGDPLPTIKWFREDFPITSSPDF-QIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223 (283)
Q Consensus 148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 223 (283)
|+.+.|.|.+.|.|.|.++|+|++..+...... .... ....|.|.++..+|+|.|.|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV--SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe--eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 678999999999999999999999988653211 1211 1236999999999999999999999999988888876
No 43
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.55 E-value=4.8e-14 Score=91.33 Aligned_cols=73 Identities=29% Similarity=0.341 Sum_probs=63.2
Q ss_pred CCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060 148 QDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223 (283)
Q Consensus 148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 223 (283)
|+.+.|.|.+.|.|.|.++|+|++..+....++.+... .+|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPD---GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCC---CeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 67899999999999999999999998877666655332 35999999999999999999999999998888764
No 44
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.55 E-value=1.3e-13 Score=92.20 Aligned_cols=81 Identities=21% Similarity=0.370 Sum_probs=66.2
Q ss_pred eeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCe-EEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEE
Q psy14060 143 CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDF-QIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL 221 (283)
Q Consensus 143 ~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 221 (283)
..+..|+.+.|.|.+.|.|.|.+.|+|++..+...... ..........|.|.++..+|+|.|+|.+.|..|.....+.|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 35778999999999999999999999999998764432 12222334579999999999999999999999998888877
Q ss_pred EE
Q psy14060 222 VV 223 (283)
Q Consensus 222 ~v 223 (283)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 64
No 45
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.55 E-value=9e-14 Score=90.90 Aligned_cols=75 Identities=28% Similarity=0.373 Sum_probs=62.2
Q ss_pred CCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060 148 QDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223 (283)
Q Consensus 148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 223 (283)
|+.+.|.|.+.|.|.|.+.|++++..+...... .........|.|.++..+|.|.|+|.|.|..|...+.+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 678999999999999999999999988654332 112223357999999999999999999999999998888876
No 46
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.54 E-value=2e-13 Score=94.31 Aligned_cols=91 Identities=23% Similarity=0.397 Sum_probs=67.8
Q ss_pred CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCC----CCeE-EEEeCCEEEEEEc--CCCCCCCEEEE
Q psy14060 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS----PDFQ-IHTFSTKSILIMR--QVFMEDSGVFA 205 (283)
Q Consensus 133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~----~~~~-~~~~~~~~~l~i~--~~~~~d~G~Y~ 205 (283)
+|.+...+....+..|+.+.|.|.+.|.|.|.+.|+|++..+... .... ....+....+.+. .+..+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 577888888899999999999999999999999999999987651 1112 2222332333333 34689999999
Q ss_pred EEEEeCCce-eEEEEEEEE
Q psy14060 206 VIAENRGGK-AKCSANLVV 223 (283)
Q Consensus 206 C~a~n~~g~-~~~~~~l~v 223 (283)
|.|.|..|. .+..+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999998 555566654
No 47
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.52 E-value=3.7e-13 Score=89.66 Aligned_cols=77 Identities=23% Similarity=0.374 Sum_probs=62.5
Q ss_pred CcEEEEEEEeeecCC--EEEEEeCCEecCCC---CCeEE-EEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEE
Q psy14060 149 DQARFEVEFDGDPLP--TIKWFREDFPITSS---PDFQI-HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV 222 (283)
Q Consensus 149 ~~v~l~C~~~g~p~~--~~~W~k~~~~~~~~---~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 222 (283)
+.+.|.|.+.|.|.| .++|++++..+... .++.+ ........|.|.+++..|+|.|+|.|.|..|...+.+.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 468999999999887 58999999887542 23322 2222346899999999999999999999999999999999
Q ss_pred EEe
Q psy14060 223 VEE 225 (283)
Q Consensus 223 v~~ 225 (283)
|..
T Consensus 81 V~~ 83 (85)
T cd05854 81 VRG 83 (85)
T ss_pred EEC
Confidence 985
No 48
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.51 E-value=8.2e-14 Score=89.15 Aligned_cols=68 Identities=32% Similarity=0.533 Sum_probs=58.2
Q ss_pred EEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEE
Q psy14060 151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL 221 (283)
Q Consensus 151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 221 (283)
+.|.|.+.|.|.|.+.|+|++..+....++.+.. ...|.|.++..+|+|.|+|.|.|..|....+..|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP---EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECC---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 4799999999999999999999887665655433 2369999999999999999999999998877765
No 49
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.51 E-value=3.9e-13 Score=88.46 Aligned_cols=71 Identities=17% Similarity=0.312 Sum_probs=57.6
Q ss_pred EEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEe-------CCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEE
Q psy14060 152 RFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF-------STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV 222 (283)
Q Consensus 152 ~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 222 (283)
.|.|.+.|.|.|.++|+|+|..+....+...... .....|.|.++..+|+|.|+|.|.|..|.......+.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 4789999999999999999999976654332211 2245799999999999999999999999988776654
No 50
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.51 E-value=8.4e-13 Score=89.76 Aligned_cols=82 Identities=24% Similarity=0.472 Sum_probs=62.9
Q ss_pred CeEEecCCceeec---CCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCC-CCCCEEEEEEEE
Q psy14060 134 PVFTKKIQPCRAF---EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVF-MEDSGVFAVIAE 209 (283)
Q Consensus 134 p~~~~~~~~~~~~---~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~ 209 (283)
|.|+..+.+..+. .|+.+.|.|.+.|.|.|.++|+|++..+............ ..|.|.++. .+|.|.|.|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~--g~L~i~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLID--GNLIISNPSEVKDSGRYQCLAT 79 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeC--CeEEEccCCccCcCEEEEEEEE
Confidence 5667777766543 4689999999999999999999999988654333332222 358888875 699999999999
Q ss_pred eCCceeEE
Q psy14060 210 NRGGKAKC 217 (283)
Q Consensus 210 n~~g~~~~ 217 (283)
|..|...+
T Consensus 80 N~~G~~~S 87 (94)
T cd05848 80 NSIGSILS 87 (94)
T ss_pred cCCCeEEe
Confidence 99998754
No 51
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.50 E-value=1.9e-13 Score=87.14 Aligned_cols=68 Identities=21% Similarity=0.386 Sum_probs=55.8
Q ss_pred EEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060 151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223 (283)
Q Consensus 151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 223 (283)
+.|.|.+.|.|.|.+.|+|++..+..... +. ....|.|.++..+|+|.|+|.|.|..|......++.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~--~~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT--FK---RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCE--Ec---cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 36899999999999999999999875432 21 2346999999999999999999999998776666554
No 52
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.50 E-value=2.5e-13 Score=87.28 Aligned_cols=69 Identities=22% Similarity=0.436 Sum_probs=57.3
Q ss_pred EEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060 151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223 (283)
Q Consensus 151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 223 (283)
+.|.|.+.|.|.|.+.|+|++..+....++. .....|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK----KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEE----cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 4689999999999999999999987653322 23357999999999999999999999998777766654
No 53
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.50 E-value=3.7e-13 Score=88.01 Aligned_cols=72 Identities=28% Similarity=0.565 Sum_probs=57.3
Q ss_pred EEEEEEEeeecCCEEEEEeCCEecCCCC-CeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEE
Q psy14060 151 ARFEVEFDGDPLPTIKWFREDFPITSSP-DFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224 (283)
Q Consensus 151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 224 (283)
++|.|.+.|.|.|.+.|+|++..+.... .+.+. .....|.|.++..+|+|.|.|.|.|..|...++..+.+.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~ 73 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVS--SKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS 73 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEe--CCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence 4799999999999999999999886543 33332 223479999999999999999999999987665555543
No 54
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.50 E-value=3.3e-13 Score=88.73 Aligned_cols=78 Identities=15% Similarity=0.342 Sum_probs=64.2
Q ss_pred CceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060 141 QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN 220 (283)
Q Consensus 141 ~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 220 (283)
+...+..|+.+.|.|.+.+. .+.+.|+|+|..+....++.+. + ..|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~--~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~ 76 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--G--EEVQIKDAVPRDSGLYACVTSSPSGSDTTYFS 76 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--C--CEEEECCCChhhCEEEEEEEeCCCCcccEEEE
Confidence 45678899999999999985 6789999999998766555543 2 26999999999999999999999888776666
Q ss_pred EEE
Q psy14060 221 LVV 223 (283)
Q Consensus 221 l~v 223 (283)
+.|
T Consensus 77 v~V 79 (79)
T cd04973 77 VNV 79 (79)
T ss_pred EeC
Confidence 543
No 55
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.49 E-value=3.8e-13 Score=87.50 Aligned_cols=71 Identities=21% Similarity=0.396 Sum_probs=56.6
Q ss_pred EEEEEEeeecCCEEEEEeCCEecCCCCCeE--EEE---eCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEE
Q psy14060 152 RFEVEFDGDPLPTIKWFREDFPITSSPDFQ--IHT---FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV 222 (283)
Q Consensus 152 ~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~--~~~---~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 222 (283)
.|.|.+.|.|.|.++|||++..+....+.. +.. ......|.|.++..+|+|.|+|.|.|..|.......+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 378999999999999999999997655432 211 12345799999999999999999999999877665543
No 56
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.48 E-value=5.1e-13 Score=87.25 Aligned_cols=74 Identities=30% Similarity=0.500 Sum_probs=61.7
Q ss_pred EEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEE
Q psy14060 151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224 (283)
Q Consensus 151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 224 (283)
+.|.|.+.|.|.|.+.|+|++..+......++........|.|.++..+|.|.|+|.+.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 36899999999999999999998875543333333444579999999999999999999999999988888876
No 57
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.48 E-value=2.2e-13 Score=87.60 Aligned_cols=70 Identities=26% Similarity=0.432 Sum_probs=57.4
Q ss_pred EEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060 151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223 (283)
Q Consensus 151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 223 (283)
+.|.|.+.|.|.|.+.|+|++..+.... ... ......|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKK--LNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCc-eeE--EcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4689999999999999999988765432 211 223457999999999999999999999999888887766
No 58
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.48 E-value=2.1e-12 Score=87.89 Aligned_cols=86 Identities=22% Similarity=0.342 Sum_probs=63.8
Q ss_pred CeEEecCCceeecCC---CcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCC-CCCCEEEEEEEE
Q psy14060 134 PVFTKKIQPCRAFEQ---DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVF-MEDSGVFAVIAE 209 (283)
Q Consensus 134 p~~~~~~~~~~~~~g---~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~ 209 (283)
|.|...+....+.+| +.+.|.|.+.|.|.|.++|++++..+............ ..|.|.+.. ..|.|.|.|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~--g~L~I~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVA--GNLVINNPQKARDAGSYQCLAI 79 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEEC--CeEEEccCCccCcCEEEEEEEE
Confidence 567777777766555 57999999999999999999999988643322222222 358887755 599999999999
Q ss_pred eCCceeEE-EEEE
Q psy14060 210 NRGGKAKC-SANL 221 (283)
Q Consensus 210 n~~g~~~~-~~~l 221 (283)
|..|...+ .+.|
T Consensus 80 N~~G~~~s~~a~l 92 (94)
T cd05850 80 NRCGTVVSREANL 92 (94)
T ss_pred cCcCcEEEEEEEE
Confidence 99998655 3443
No 59
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.48 E-value=1.7e-12 Score=90.72 Aligned_cols=79 Identities=23% Similarity=0.351 Sum_probs=64.0
Q ss_pred CCCcEEEEEEEeeecCCEEEEEeCCEecCC-CCCeEEEEe----CCEEEEEEcCCC-CCCCEEEEEEEEeCCceeEEEEE
Q psy14060 147 EQDQARFEVEFDGDPLPTIKWFREDFPITS-SPDFQIHTF----STKSILIMRQVF-MEDSGVFAVIAENRGGKAKCSAN 220 (283)
Q Consensus 147 ~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~-~~~~~~~~~----~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~ 220 (283)
.|..+.|.|.+.|.|.+.+.|+|++..+.. ..++.+... ...+.|.|.++. .+|.|.|+|.|.|..|.......
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~ 101 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ 101 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence 467899999999999999999999998864 234433221 124579999987 59999999999999999988888
Q ss_pred EEEEe
Q psy14060 221 LVVEE 225 (283)
Q Consensus 221 l~v~~ 225 (283)
|.+..
T Consensus 102 L~~~~ 106 (109)
T cd05773 102 LVSTS 106 (109)
T ss_pred EEecC
Confidence 88875
No 60
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.48 E-value=1.3e-12 Score=88.55 Aligned_cols=84 Identities=21% Similarity=0.398 Sum_probs=62.9
Q ss_pred CeEEecCCceeecCC---CcEEEEEEEeeecCCEEEEEeCCEecCC-CCCeEEEEeCCEEEEEEcCCC-CCCCEEEEEEE
Q psy14060 134 PVFTKKIQPCRAFEQ---DQARFEVEFDGDPLPTIKWFREDFPITS-SPDFQIHTFSTKSILIMRQVF-MEDSGVFAVIA 208 (283)
Q Consensus 134 p~~~~~~~~~~~~~g---~~v~l~C~~~g~p~~~~~W~k~~~~~~~-~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a 208 (283)
|.|...+....+.++ ..+.|.|.+.|.|.|.++|+|++..+.. ..++.+. + ..|.|.++. .+|+|.|.|.|
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~--~--g~L~I~~~~~~~D~G~Y~C~A 77 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV--G--GNLVINNPDKYKDAGRYVCIV 77 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE--C--CEEEECcCCcCCCCEEEEEEE
Confidence 667766666655443 4799999999999999999999988753 2333221 2 368998875 68999999999
Q ss_pred EeCCceeEE-EEEE
Q psy14060 209 ENRGGKAKC-SANL 221 (283)
Q Consensus 209 ~n~~g~~~~-~~~l 221 (283)
.|..|...+ .+.|
T Consensus 78 ~N~~G~~~s~~a~l 91 (93)
T cd05849 78 SNIYGKVRSREATL 91 (93)
T ss_pred EeCcceEEEccEEE
Confidence 999998654 3443
No 61
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.47 E-value=3.8e-13 Score=87.60 Aligned_cols=71 Identities=27% Similarity=0.506 Sum_probs=56.1
Q ss_pred EEEEEEEeeecCCEEEEEeCCEecCC---CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060 151 ARFEVEFDGDPLPTIKWFREDFPITS---SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223 (283)
Q Consensus 151 v~l~C~~~g~p~~~~~W~k~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 223 (283)
+.|.|.+.|.|.|.++|+|++..... ..++.+. .....|.|.++..+|+|.|.|.|.|..|.....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVM--PEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEe--cCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 36899999999999999999864322 1233332 22346999999999999999999999999888888876
No 62
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.47 E-value=8.6e-13 Score=84.13 Aligned_cols=68 Identities=16% Similarity=0.392 Sum_probs=55.2
Q ss_pred CCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEE
Q psy14060 148 QDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL 221 (283)
Q Consensus 148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 221 (283)
|+.+.|.|.+.|.|.|.++|+|++..+....++.. ....|.|.++ .|+|.|+|.|.|..|...+++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNI--YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence 67899999999999999999999998765443322 2235888887 47999999999999998877765
No 63
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.47 E-value=1.1e-12 Score=88.47 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=63.6
Q ss_pred CceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEE-EE
Q psy14060 141 QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC-SA 219 (283)
Q Consensus 141 ~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~ 219 (283)
..+.+.+|+.++|.|.+.|. .|.+.|+|++..+... ++.+. .....|.|.++..+|+|.|.|.|.|..|...+ .+
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~ 86 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLS--NDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPY 86 (91)
T ss_pred CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEe--CCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeE
Confidence 45688899999999999999 9999999999887643 33332 23347999999999999999999999998554 45
Q ss_pred EEEE
Q psy14060 220 NLVV 223 (283)
Q Consensus 220 ~l~v 223 (283)
.|.|
T Consensus 87 ~L~V 90 (91)
T cd05740 87 ILNV 90 (91)
T ss_pred EEEe
Confidence 5554
No 64
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.46 E-value=9.3e-13 Score=87.38 Aligned_cols=78 Identities=22% Similarity=0.374 Sum_probs=62.8
Q ss_pred eeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEE
Q psy14060 143 CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV 222 (283)
Q Consensus 143 ~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 222 (283)
.....|+.+.|.|.+.|.|.|.+.|++++..+....... .......|.|.++..+|+|.|+|.+.|..|.....+.|.
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 345679999999999999999999999998775433221 122346799999999999999999999999877776664
No 65
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.46 E-value=2.5e-12 Score=88.31 Aligned_cols=88 Identities=23% Similarity=0.281 Sum_probs=69.6
Q ss_pred CCeEEecCCceeecCCCcEEEEEEEeeecCC-EEEEEeCCEecCCC--CCeEEEEe----CCEEEEEEcCCCCCC-CEEE
Q psy14060 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITSS--PDFQIHTF----STKSILIMRQVFMED-SGVF 204 (283)
Q Consensus 133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~~~W~k~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d-~G~Y 204 (283)
||.+. .+....+..|+.+.|.|.+.|.|.| .+.|++++..+... .++.+... +..+.|.|.++..+| .|.|
T Consensus 2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 55554 4456778999999999999999999 69999999887653 45655543 234579999999955 8999
Q ss_pred EEEEEeCCceeEEEEEE
Q psy14060 205 AVIAENRGGKAKCSANL 221 (283)
Q Consensus 205 ~C~a~n~~g~~~~~~~l 221 (283)
.|.|.|..|.....+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999998776665
No 66
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.46 E-value=5.6e-13 Score=90.07 Aligned_cols=75 Identities=27% Similarity=0.376 Sum_probs=61.6
Q ss_pred CCcEEEEEEEeeecCCEEEEEeCCEecC--------CCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEE
Q psy14060 148 QDQARFEVEFDGDPLPTIKWFREDFPIT--------SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSA 219 (283)
Q Consensus 148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 219 (283)
|+.+.|.|.+.|.|.|.+.|+|++..+. ...++.+.. ...|.|.++..+|+|.|+|.+.|..|.....+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ---TGDLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECC---CCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 6789999999999999999999876431 122333322 23699999999999999999999999999999
Q ss_pred EEEEEe
Q psy14060 220 NLVVEE 225 (283)
Q Consensus 220 ~l~v~~ 225 (283)
.|.|..
T Consensus 78 ~l~V~~ 83 (90)
T cd05726 78 YLEVTD 83 (90)
T ss_pred EEEEee
Confidence 999986
No 67
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.46 E-value=8.3e-13 Score=87.20 Aligned_cols=77 Identities=14% Similarity=0.233 Sum_probs=61.6
Q ss_pred CcEEEEEEEeee--cCCEEEEEeCCEecCC---CCCeEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEE
Q psy14060 149 DQARFEVEFDGD--PLPTIKWFREDFPITS---SPDFQIHTF-STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV 222 (283)
Q Consensus 149 ~~v~l~C~~~g~--p~~~~~W~k~~~~~~~---~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 222 (283)
+++.|.|.+.+. +.+.+.|+++|..+.. ..++.+... .....|.|.++..+|+|.|+|.|.|..+....++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 468999999774 4678999999999862 223433221 2234699999999999999999999999999999999
Q ss_pred EEe
Q psy14060 223 VEE 225 (283)
Q Consensus 223 v~~ 225 (283)
|..
T Consensus 81 V~~ 83 (85)
T cd05853 81 VRG 83 (85)
T ss_pred Eec
Confidence 985
No 68
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.45 E-value=7.4e-13 Score=86.02 Aligned_cols=73 Identities=26% Similarity=0.455 Sum_probs=58.6
Q ss_pred CCcEEEEEEEeeecCCEEEEEe-CCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060 148 QDQARFEVEFDGDPLPTIKWFR-EDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223 (283)
Q Consensus 148 g~~v~l~C~~~g~p~~~~~W~k-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 223 (283)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+..... ..+|.|..+..+|.|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYD---NGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEec---CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 6789999999999999999997 566665544433322 236999999999999999999999999887777654
No 69
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.45 E-value=1.4e-12 Score=87.15 Aligned_cols=77 Identities=18% Similarity=0.348 Sum_probs=61.5
Q ss_pred CcEEEEEEEeeecCC--EEEEEeCCEecCCCC---CeE-EEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEE
Q psy14060 149 DQARFEVEFDGDPLP--TIKWFREDFPITSSP---DFQ-IHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV 222 (283)
Q Consensus 149 ~~v~l~C~~~g~p~~--~~~W~k~~~~~~~~~---~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 222 (283)
+++.|.|.+.|.|.| .+.|++++..+.... .+. .........|.|.++...|+|.|+|.|.|..|.....+.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999998877 679999998875321 222 21222345799999999999999999999999999999999
Q ss_pred EEe
Q psy14060 223 VEE 225 (283)
Q Consensus 223 v~~ 225 (283)
|..
T Consensus 81 V~~ 83 (85)
T cd04970 81 VRG 83 (85)
T ss_pred EEC
Confidence 985
No 70
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.45 E-value=9.9e-13 Score=88.80 Aligned_cols=76 Identities=24% Similarity=0.360 Sum_probs=58.4
Q ss_pred CCcEEEEEEEeeecCCEEEEEeC----CEecCCCCC--eEEEEe-------CCEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060 148 QDQARFEVEFDGDPLPTIKWFRE----DFPITSSPD--FQIHTF-------STKSILIMRQVFMEDSGVFAVIAENRGGK 214 (283)
Q Consensus 148 g~~v~l~C~~~g~p~~~~~W~k~----~~~~~~~~~--~~~~~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 214 (283)
|+.+.|.|.+.|.|.|.++|+|+ +..+..... ..+... .....|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 67899999999999999999984 333332211 121111 12357999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy14060 215 AKCSANLVV 223 (283)
Q Consensus 215 ~~~~~~l~v 223 (283)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 988888876
No 71
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.45 E-value=5.4e-13 Score=85.39 Aligned_cols=69 Identities=36% Similarity=0.551 Sum_probs=56.9
Q ss_pred EEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060 151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223 (283)
Q Consensus 151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 223 (283)
+.|.|.+.|.|.|.+.|+|++..+.. .++.+.. ...|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEILD---DKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC-CcEEEee---CCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 47999999999999999999877654 3444432 236999999999999999999999999888877754
No 72
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.45 E-value=3.8e-12 Score=86.20 Aligned_cols=84 Identities=18% Similarity=0.334 Sum_probs=63.5
Q ss_pred ecCCceeecCCCcEEEEEEEeeecCCEEEEEe-CCEecCCCCCeEEEE-eCCEEEEEEcCCCCCCCEEEEEEEEeCCce-
Q psy14060 138 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFR-EDFPITSSPDFQIHT-FSTKSILIMRQVFMEDSGVFAVIAENRGGK- 214 (283)
Q Consensus 138 ~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k-~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~- 214 (283)
..+....+..|+.+.|.|.+.|.| +.+.|++ ++..+....++.+.. ....++|.|.++..+|+|.|+|.|.|..|.
T Consensus 5 v~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~ 83 (92)
T cd04977 5 IVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTE 83 (92)
T ss_pred EecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCc
Confidence 445667899999999999999986 4999998 565555444444333 234568999999999999999999998654
Q ss_pred eEEEEEEE
Q psy14060 215 AKCSANLV 222 (283)
Q Consensus 215 ~~~~~~l~ 222 (283)
...++.|.
T Consensus 84 ~~~sv~l~ 91 (92)
T cd04977 84 SEATVNLK 91 (92)
T ss_pred ceeEEEEE
Confidence 45555554
No 73
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.44 E-value=3.7e-12 Score=93.40 Aligned_cols=115 Identities=13% Similarity=0.198 Sum_probs=79.3
Q ss_pred EEEEccCCCCCCeEEEEEEEecce-eeeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEec
Q psy14060 98 ERVVDASELDDDGYYAITERKYYA-LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPI 174 (283)
Q Consensus 98 ~L~i~~~~~~D~G~Y~C~a~n~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~ 174 (283)
+|.|.+++.+|+|.|.|.+.+..+ ......+.+..+|.+...+.......|+.+.|.|.+.|. |. +.+.|++++...
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~ 81 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGD 81 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCC
Confidence 689999999999999999987655 334455666778887766665555578899999999985 54 489999997542
Q ss_pred CC----CCCe-----EEEEeCC---EEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060 175 TS----SPDF-----QIHTFST---KSILIMRQVFMEDSGVFAVIAENRG 212 (283)
Q Consensus 175 ~~----~~~~-----~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~ 212 (283)
.. .... ....++. .+.|.+......+.+.|+|.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 82 SPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred ccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 11 0111 1111111 2356666655566779999998754
No 74
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.43 E-value=1.6e-12 Score=85.39 Aligned_cols=73 Identities=19% Similarity=0.339 Sum_probs=58.3
Q ss_pred EecCCceeecCCCcEEEEEEEeeecCC-EEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060 137 TKKIQPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA 215 (283)
Q Consensus 137 ~~~~~~~~~~~g~~v~l~C~~~g~p~~-~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 215 (283)
...+.+..+..|+.+.|.|.+.|.|.| .+.|+|++..+.... ....+.|.|..+ .|.|.|.|.|.|..|..
T Consensus 2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~------~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~ 73 (81)
T cd05749 2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPP------APSPSVLNVPGL--NETSKFSCEAHNAKGVT 73 (81)
T ss_pred cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCC------CCCCCEEEEccc--cCCeEEEEEEEeccCcE
Confidence 445677889999999999999999999 799999999885411 112246888876 47899999999999975
Q ss_pred EE
Q psy14060 216 KC 217 (283)
Q Consensus 216 ~~ 217 (283)
.+
T Consensus 74 ~s 75 (81)
T cd05749 74 TS 75 (81)
T ss_pred Ee
Confidence 54
No 75
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.43 E-value=1.3e-12 Score=84.69 Aligned_cols=70 Identities=26% Similarity=0.476 Sum_probs=55.6
Q ss_pred EEEEEEEeeecCCEEEEEeCCEecCC--CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee-EEEEEEEE
Q psy14060 151 ARFEVEFDGDPLPTIKWFREDFPITS--SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA-KCSANLVV 223 (283)
Q Consensus 151 v~l~C~~~g~p~~~~~W~k~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v 223 (283)
++|.|.+.|.|.|.+.|+|++..+.. ..++... ....|.|.++..+|+|.|.|.|.|..|.. +..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~---~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL---RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc---CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 47999999999999999999998763 3343332 22359999999999999999999999984 45566655
No 76
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.43 E-value=1.3e-12 Score=85.19 Aligned_cols=70 Identities=23% Similarity=0.353 Sum_probs=57.0
Q ss_pred EEEEEEEee-ecCCEEEEEeCCEecCCCCCe---EEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060 151 ARFEVEFDG-DPLPTIKWFREDFPITSSPDF---QIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN 220 (283)
Q Consensus 151 v~l~C~~~g-~p~~~~~W~k~~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 220 (283)
+.|.|.+.| .|.|.+.|+|++..+...... .+........|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 468999999 899999999999988754432 2333345678999999999999999999999998776654
No 77
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.43 E-value=1.5e-12 Score=83.89 Aligned_cols=70 Identities=23% Similarity=0.317 Sum_probs=56.9
Q ss_pred EEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060 151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223 (283)
Q Consensus 151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 223 (283)
+.|.|.+.|.|.|.+.|+|++..+... +.. .......|.|.++..+|+|.|+|.|.|..|.......|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD-RTK--FENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC-cee--EecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 478999999999999999998876543 222 1223457999999999999999999999999888777765
No 78
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.43 E-value=1.7e-12 Score=87.02 Aligned_cols=80 Identities=21% Similarity=0.368 Sum_probs=63.7
Q ss_pred CCceeecCCCcEEEEEEE-eeecCCEEEEEeCCEecCC-CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEE
Q psy14060 140 IQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITS-SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC 217 (283)
Q Consensus 140 ~~~~~~~~g~~v~l~C~~-~g~p~~~~~W~k~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 217 (283)
+....+..|+++.|.|.+ .|.|.|.+.|+|++..+.. ..++.+.. ...|.|.++..+|+|.|+|.+.|..|...+
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 79 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERES 79 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCceee
Confidence 456788899999999998 6889999999999998775 33443332 236999999999999999999999987644
Q ss_pred -EEEEE
Q psy14060 218 -SANLV 222 (283)
Q Consensus 218 -~~~l~ 222 (283)
.+.|.
T Consensus 80 ~~~~l~ 85 (86)
T cd05724 80 AAARLS 85 (86)
T ss_pred eeEEEE
Confidence 44443
No 79
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.42 E-value=8.1e-13 Score=89.60 Aligned_cols=80 Identities=20% Similarity=0.296 Sum_probs=63.0
Q ss_pred ceeecCCCcEEEEEEEee-----ecCCEEEEEeCCEecCCC--CCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060 142 PCRAFEQDQARFEVEFDG-----DPLPTIKWFREDFPITSS--PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGK 214 (283)
Q Consensus 142 ~~~~~~g~~v~l~C~~~g-----~p~~~~~W~k~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 214 (283)
...+.+|+.+.|.|.+.+ .|.+.+.|||++..+... ...++... ...|.|.++..+|+|.|+|.+.|..|.
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~--~~~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ--KDLLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec--CCeEEEccCCcccCeEEEEEEcCCCcc
Confidence 456778999999999998 588999999998764321 12223222 246999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy14060 215 AKCSANLVV 223 (283)
Q Consensus 215 ~~~~~~l~v 223 (283)
.+..+.|.|
T Consensus 86 ~~~~~~L~v 94 (94)
T cd05756 86 MKVSISLTV 94 (94)
T ss_pred EEEEEEEEC
Confidence 888887764
No 80
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.42 E-value=2.9e-12 Score=87.51 Aligned_cols=84 Identities=21% Similarity=0.332 Sum_probs=62.8
Q ss_pred EEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCC--eEEEEeCCEEEEEEcCC-----CCCCCEEEEEEE
Q psy14060 136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD--FQIHTFSTKSILIMRQV-----FMEDSGVFAVIA 208 (283)
Q Consensus 136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~--~~~~~~~~~~~l~i~~~-----~~~d~G~Y~C~a 208 (283)
|...+.+..+..|+++.|.|.+.|.|.|.+.|+|++..+..... +.+...+ .+.|.++ ...|.|.|.|.|
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~D~G~Y~C~a 78 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG---SLLITSVVHSKHNKPDEGFYQCVA 78 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC---eEEEeeeeccCCCCCcCEEEEEEE
Confidence 44566777888999999999999999999999999998875433 2222222 3555554 689999999999
Q ss_pred EeC-CceeE-EEEEEE
Q psy14060 209 ENR-GGKAK-CSANLV 222 (283)
Q Consensus 209 ~n~-~g~~~-~~~~l~ 222 (283)
.|. .|... ..+.|.
T Consensus 79 ~N~~~G~~~s~~~~l~ 94 (95)
T cd05722 79 QNDSLGSIVSRTARLT 94 (95)
T ss_pred ECCccCcEEEeeeEEe
Confidence 999 88763 345554
No 81
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.42 E-value=1.6e-12 Score=87.78 Aligned_cols=76 Identities=24% Similarity=0.406 Sum_probs=57.7
Q ss_pred CCcEEEEEEEeeecCCEEEEEeCC----EecCCC--CCeEEEE-------eCCEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060 148 QDQARFEVEFDGDPLPTIKWFRED----FPITSS--PDFQIHT-------FSTKSILIMRQVFMEDSGVFAVIAENRGGK 214 (283)
Q Consensus 148 g~~v~l~C~~~g~p~~~~~W~k~~----~~~~~~--~~~~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 214 (283)
|+.+.|.|.+.|.|.|.++|+|++ ..+... ....... ......|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999963 222211 1111111 122347999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy14060 215 AKCSANLVV 223 (283)
Q Consensus 215 ~~~~~~l~v 223 (283)
...++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 988888876
No 82
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.41 E-value=2.3e-12 Score=85.24 Aligned_cols=76 Identities=21% Similarity=0.376 Sum_probs=56.4
Q ss_pred CCcEEEEEEEeeecCCEEEEEeCCE---e--cCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEE
Q psy14060 148 QDQARFEVEFDGDPLPTIKWFREDF---P--ITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV 222 (283)
Q Consensus 148 g~~v~l~C~~~g~p~~~~~W~k~~~---~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 222 (283)
|+.+.|.|.+.|.|.|.+.|+|++. . +................|.|.++..+|+|.|+|.+.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 6789999999999999999999742 1 1111100001111235799999999999999999999999988888776
Q ss_pred E
Q psy14060 223 V 223 (283)
Q Consensus 223 v 223 (283)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 4
No 83
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.37 E-value=3e-12 Score=83.69 Aligned_cols=67 Identities=21% Similarity=0.335 Sum_probs=50.8
Q ss_pred EEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCC----CCCEEEEEEEEeCCceeEE
Q psy14060 151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFM----EDSGVFAVIAENRGGKAKC 217 (283)
Q Consensus 151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~a~n~~g~~~~ 217 (283)
+.|.|.+.|.|.|.++|+|++..+.......+........|.|..+.. +|+|.|.|.|.|..|...+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 478999999999999999999987543322233333345688887653 7899999999999997654
No 84
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.36 E-value=2.4e-11 Score=82.25 Aligned_cols=82 Identities=22% Similarity=0.388 Sum_probs=59.7
Q ss_pred CeEEecCCceeecC---CCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCC-CCCCEEEEEEEE
Q psy14060 134 PVFTKKIQPCRAFE---QDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVF-MEDSGVFAVIAE 209 (283)
Q Consensus 134 p~~~~~~~~~~~~~---g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~ 209 (283)
|.|...+....+.. +..+.|.|.+.|.|.|.++|+|++..+............ ..|.|.++. .+|.|.|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~--~~L~i~~~~~~~d~G~Y~C~a~ 79 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVG--GNLVISNPSKAKDAGRYQCLAS 79 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEEC--CEEEEecCCccCCCEEEEEEEE
Confidence 55666666655433 457999999999999999999999988432222222222 258888776 489999999999
Q ss_pred eCCceeEE
Q psy14060 210 NRGGKAKC 217 (283)
Q Consensus 210 n~~g~~~~ 217 (283)
|..|...+
T Consensus 80 N~~G~~~S 87 (91)
T cd04967 80 NIVGTVLS 87 (91)
T ss_pred cCCCEEEe
Confidence 99997654
No 85
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.35 E-value=9.2e-12 Score=79.59 Aligned_cols=68 Identities=16% Similarity=0.364 Sum_probs=52.1
Q ss_pred EEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEE
Q psy14060 151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL 221 (283)
Q Consensus 151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 221 (283)
+.|.|.+.|.|.|.+.|+|++.++..... ..... ..+|.|.++..+|+|.|+|.+.|..........+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~-~~~~~--~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCS-RYHVD--GYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCc-EEEeC--CCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 36899999999999999999998875422 12222 2369999999999999999999986554444433
No 86
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.34 E-value=1.2e-11 Score=80.62 Aligned_cols=66 Identities=23% Similarity=0.363 Sum_probs=49.3
Q ss_pred EEEEEEEeeecCCEEEEEeCCEecCC--CCCeEEEEeCCEEEEEEcCCC----CCCCEEEEEEEEeCCceeEEE
Q psy14060 151 ARFEVEFDGDPLPTIKWFREDFPITS--SPDFQIHTFSTKSILIMRQVF----MEDSGVFAVIAENRGGKAKCS 218 (283)
Q Consensus 151 v~l~C~~~g~p~~~~~W~k~~~~~~~--~~~~~~~~~~~~~~l~i~~~~----~~d~G~Y~C~a~n~~g~~~~~ 218 (283)
+.|.|.+.|.|.|.++|+|++..+.. ..++.+ .....+|.|..+. .+|.|.|.|.|.|..|...+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~--~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSM--RRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEE--eCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 46899999999999999999987643 333333 2233468887653 246999999999999976554
No 87
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.34 E-value=8.5e-12 Score=81.40 Aligned_cols=68 Identities=21% Similarity=0.337 Sum_probs=49.0
Q ss_pred EEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCC----CCCEEEEEEEEeCCceeEEE
Q psy14060 151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFM----EDSGVFAVIAENRGGKAKCS 218 (283)
Q Consensus 151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~a~n~~g~~~~~ 218 (283)
+.|.|.+.|.|.|.++|+|++..+.......+.......+|.|..+.. .|.|.|.|.|.|..|...+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 478999999999999999999987433222222222234566766654 37899999999999986653
No 88
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.31 E-value=2.4e-11 Score=79.28 Aligned_cols=70 Identities=20% Similarity=0.330 Sum_probs=54.4
Q ss_pred EEEEEEEee-ecCCEEEEEeCCEecCCC----CCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060 151 ARFEVEFDG-DPLPTIKWFREDFPITSS----PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN 220 (283)
Q Consensus 151 v~l~C~~~g-~p~~~~~W~k~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 220 (283)
+.|.|.+.+ .|.+.+.||+++..+... .++.+........|.|.++..+|+|.|+|.+.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 468999864 577899999999887532 1233333345578999999999999999999999998776654
No 89
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.31 E-value=2e-11 Score=81.27 Aligned_cols=76 Identities=12% Similarity=0.095 Sum_probs=58.2
Q ss_pred CCcEEEEEEEeee--cCCEEEEEeCCEecCCCCC-----eEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060 148 QDQARFEVEFDGD--PLPTIKWFREDFPITSSPD-----FQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN 220 (283)
Q Consensus 148 g~~v~l~C~~~g~--p~~~~~W~k~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 220 (283)
|+.+.|.|.+.+. |.+.+.|++++..+..... .........+.|.|.++..+|+|.|+|.+.|..+....++.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 6789999999998 7889999987765432111 00111123468999999999999999999999999888887
Q ss_pred EEE
Q psy14060 221 LVV 223 (283)
Q Consensus 221 l~v 223 (283)
+.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 765
No 90
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.31 E-value=9.8e-12 Score=81.13 Aligned_cols=67 Identities=13% Similarity=0.240 Sum_probs=54.9
Q ss_pred CeEEecCCceeecCCCcEEEEEEEeeecC-CEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPL-PTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR 211 (283)
Q Consensus 134 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~-~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 211 (283)
|.+...+....+.+|++++|.|.+.+.|. ..+.|+|++..+.. ....|.|.++ .+|+|.|+|.|.|.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence 45666777889999999999999998776 46999999988732 1235888888 99999999999875
No 91
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.30 E-value=3.5e-11 Score=79.93 Aligned_cols=77 Identities=18% Similarity=0.274 Sum_probs=55.5
Q ss_pred CCcEEEEEEEeeecCCEEEEEeCCEecCCCC----CeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCc--eeEEEEEE
Q psy14060 148 QDQARFEVEFDGDPLPTIKWFREDFPITSSP----DFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG--KAKCSANL 221 (283)
Q Consensus 148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l 221 (283)
|+++.|.|.+.+.|.+.+.|++.+....... ...+......+.|.|.++..+|+|.|.|.+.|..+ ....+..+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 6889999999998999999998765432211 11111112256899999999999999999999876 44555666
Q ss_pred EEE
Q psy14060 222 VVE 224 (283)
Q Consensus 222 ~v~ 224 (283)
+|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 554
No 92
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.29 E-value=9.1e-11 Score=78.25 Aligned_cols=80 Identities=24% Similarity=0.381 Sum_probs=63.5
Q ss_pred eeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEE-EEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEE
Q psy14060 143 CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI-HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL 221 (283)
Q Consensus 143 ~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 221 (283)
..+..|+.+.|.|.+.+.|.+.+.|++++..+........ ........|.|.++..+|.|.|.|.+.|..|....++.|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 3456799999999999999999999999988765433322 122334579999999999999999999999987777666
Q ss_pred E
Q psy14060 222 V 222 (283)
Q Consensus 222 ~ 222 (283)
.
T Consensus 84 ~ 84 (85)
T cd05729 84 D 84 (85)
T ss_pred e
Confidence 5
No 93
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.29 E-value=1.6e-10 Score=78.37 Aligned_cols=88 Identities=19% Similarity=0.311 Sum_probs=68.8
Q ss_pred CCeEEecCCceeecCCCcEEEEEEEeeecCC-EEEEEeCCEecCC--CCCeEEEEe----CCEEEEEEcCCCCCC-CEEE
Q psy14060 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITS--SPDFQIHTF----STKSILIMRQVFMED-SGVF 204 (283)
Q Consensus 133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~~~W~k~~~~~~~--~~~~~~~~~----~~~~~l~i~~~~~~d-~G~Y 204 (283)
||.+ .......+.+|+.+.|.|.+.+.|.| .+.|..++..+.. ..++.+... +..+.|.|.++...| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 5655 45566788999999999999888887 5788877776654 346666554 367889999998877 7999
Q ss_pred EEEEEeCCceeEEEEEE
Q psy14060 205 AVIAENRGGKAKCSANL 221 (283)
Q Consensus 205 ~C~a~n~~g~~~~~~~l 221 (283)
.|.|.|.+|.......|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999998776654
No 94
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.28 E-value=7.5e-11 Score=80.21 Aligned_cols=83 Identities=13% Similarity=0.150 Sum_probs=60.6
Q ss_pred CCceeecCCCcEEEEEEEeeecCCEEEEEeCCE--------ecCCCCCeEEEEe-CCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060 140 IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDF--------PITSSPDFQIHTF-STKSILIMRQVFMEDSGVFAVIAEN 210 (283)
Q Consensus 140 ~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~--------~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n 210 (283)
+.++.+.+|+++.|.|.+.+.|.+.+.|++.+. ......++..... ....+|.|.++..+|+|.|+|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 456789999999999999999999999986322 2222345544322 3456899999999999999999987
Q ss_pred CCceeEEEEEEEE
Q psy14060 211 RGGKAKCSANLVV 223 (283)
Q Consensus 211 ~~g~~~~~~~l~v 223 (283)
. ......+.|.|
T Consensus 84 ~-~~~~~~~~l~v 95 (95)
T cd07701 84 M-PVKTSKAYLTV 95 (95)
T ss_pred e-cCccEEEEEEC
Confidence 4 33355555543
No 95
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.27 E-value=3.4e-11 Score=79.18 Aligned_cols=69 Identities=25% Similarity=0.341 Sum_probs=50.5
Q ss_pred EEEEEEEeeecCCEEEEEeCCEecC--------CCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee-EEEEEE
Q psy14060 151 ARFEVEFDGDPLPTIKWFREDFPIT--------SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA-KCSANL 221 (283)
Q Consensus 151 v~l~C~~~g~p~~~~~W~k~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l 221 (283)
++|.|.+.|.|.|.+.|++++.... ...++.+. ...+|.|.++..+|+|.|.|.|.|..|.. +..+.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL---SNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe---cCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 4799999999999999999743221 12233322 22469999999999999999999999875 334444
Q ss_pred E
Q psy14060 222 V 222 (283)
Q Consensus 222 ~ 222 (283)
.
T Consensus 78 ~ 78 (79)
T cd05734 78 T 78 (79)
T ss_pred e
Confidence 3
No 96
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.26 E-value=1.2e-10 Score=77.23 Aligned_cols=68 Identities=10% Similarity=0.151 Sum_probs=55.3
Q ss_pred CCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCC-CCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060 140 IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS-PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG 212 (283)
Q Consensus 140 ~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 212 (283)
|....+..|+++.|.|.+.+ +.+.+.|++++..+... .++.+ ..+ .|.|.+++.+|+|.|+|.+.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~-~~~---~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLL-YRD---GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEE-ECC---cEEEeCCCHHHCEEEEEEEEecc
Confidence 55678899999999999865 77899999999998765 33433 222 49999999999999999998764
No 97
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.26 E-value=8.3e-11 Score=79.76 Aligned_cols=70 Identities=11% Similarity=0.147 Sum_probs=54.6
Q ss_pred CceeecCCCcEEEEEEEeeecCCEEEEEeCCEec--------CCCCCeEEEEeC-CEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060 141 QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPI--------TSSPDFQIHTFS-TKSILIMRQVFMEDSGVFAVIAEN 210 (283)
Q Consensus 141 ~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~--------~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n 210 (283)
.+..+..|+++.|.|.+.+.|.+.+.|++++..+ ....++.+.... ...+|.|.++..+|.|.|+|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 4678899999999999999999999999987532 112334333222 346899999999999999999976
No 98
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.26 E-value=7e-11 Score=78.86 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=62.2
Q ss_pred ecCCceeecCCCcEEEEEEEee-ecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060 138 KKIQPCRAFEQDQARFEVEFDG-DPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK 216 (283)
Q Consensus 138 ~~~~~~~~~~g~~v~l~C~~~g-~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 216 (283)
..+....+..|+.++|.|.+.+ .|.+.+.|++++..+.... . .....|.|.++..+|+|.|+|.+.|..|...
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----~--~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~ 79 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----M--DFNGILTIRNVQLSDAGTYVCTGSNMLDTDE 79 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----c--ccCCEEEECCCCHHHCEEEEEEEeccCCeEe
Confidence 3456678899999999999975 6788999999987654321 1 1234699999999999999999999999988
Q ss_pred EEEEE
Q psy14060 217 CSANL 221 (283)
Q Consensus 217 ~~~~l 221 (283)
..+.|
T Consensus 80 ~~~~l 84 (85)
T cd05754 80 ATATL 84 (85)
T ss_pred EEEEE
Confidence 87765
No 99
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.23 E-value=9.2e-11 Score=80.30 Aligned_cols=76 Identities=12% Similarity=0.226 Sum_probs=57.9
Q ss_pred eeeecCcEEEEEEEccCccce-------EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccCC
Q psy14060 59 EIHTAKSQQVQKEKKGDKEIV-------RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQKP 130 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~~i~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~~ 130 (283)
.+..|+.+.|.|.+.|.|.++ +.+..+.++.+........|.|.++..+|+|.|+|.+.|..|. .....+.+
T Consensus 11 ~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V 90 (98)
T cd05762 11 KVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTV 90 (98)
T ss_pred EEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEE
Confidence 477889999999999999544 3455556677766667789999999999999999999999994 33334444
Q ss_pred CCCC
Q psy14060 131 AKPP 134 (283)
Q Consensus 131 ~~~p 134 (283)
..+|
T Consensus 91 ~~~P 94 (98)
T cd05762 91 VDKP 94 (98)
T ss_pred ecCC
Confidence 3333
No 100
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.21 E-value=1.1e-10 Score=78.66 Aligned_cols=82 Identities=17% Similarity=0.266 Sum_probs=60.3
Q ss_pred CCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCC--CeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC-ceeE
Q psy14060 140 IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSP--DFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG-GKAK 216 (283)
Q Consensus 140 ~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~ 216 (283)
+....+..|+.+.|.|.+.+ |.+.+.|++++..+.... ..++... ...|.|.++..+|+|.|.|.+.+.. +...
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~ 79 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--EDGLLIRSVSPADAGVYTCQSVEHGFKQTL 79 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--CCCEEEccCCHHHCEEEEEEEecCccceeE
Confidence 34567889999999999987 888999999988765432 1122221 2249999999999999999998764 3445
Q ss_pred EEEEEEEE
Q psy14060 217 CSANLVVE 224 (283)
Q Consensus 217 ~~~~l~v~ 224 (283)
.+..|.|.
T Consensus 80 ~~~~l~V~ 87 (89)
T cd04979 80 ATYSLNVL 87 (89)
T ss_pred eEEEEEEe
Confidence 55666664
No 101
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.21 E-value=1.3e-10 Score=85.20 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=63.2
Q ss_pred EEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEee-CC-Ce
Q psy14060 190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KP-LD 267 (283)
Q Consensus 190 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~ 267 (283)
+|.|.+++.+|.|.|.|.+.+..+.......|.|.. +|.+...+.......|+.+.|.|.+.|. |. +.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~----------~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~ 71 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE----------PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQ 71 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec----------CCceEEeCCCceeecCCcEEEEEEECCCCCCCeE
Confidence 589999999999999999999888888888888874 6777665555555578999999999985 54 38
Q ss_pred eEEeeCCEE
Q psy14060 268 VYWLKVSSL 276 (283)
Q Consensus 268 v~W~~~g~~ 276 (283)
|+|+++|..
T Consensus 72 i~W~~~g~~ 80 (139)
T cd05771 72 VEWTREPPG 80 (139)
T ss_pred EEEEECCCC
Confidence 999999854
No 102
>KOG3515|consensus
Probab=99.20 E-value=5e-11 Score=106.22 Aligned_cols=212 Identities=11% Similarity=0.082 Sum_probs=133.8
Q ss_pred eeeecCcEEEEEEEccCccce--EEeecCC----CEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee--eeeccCC
Q psy14060 59 EIHTAKSQQVQKEKKGDKEIV--RKITATE----TTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS--DLSEQKP 130 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~~i~--~~~~~~~----~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~--~~~~~~~ 130 (283)
.+..|+.|.|.|.+.++|.++ .|..... ++... -...|......+..-+.|.|.+.|..+.. ....+.+
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v 94 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGRYATI---ADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDV 94 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCcccccccccc---cCCceeeecchhhhhhhhhhhhcccccCceecceeecc
Confidence 478899999999999998444 3332222 11111 23456666666666679999999986632 2233445
Q ss_pred CCCCeEEecCCceeecCCCcEEEEEEEe--eecCCEEEEEeCCEecCCCC--CeEE----E--EeCCEEEEEEcCCCCCC
Q psy14060 131 AKPPVFTKKIQPCRAFEQDQARFEVEFD--GDPLPTIKWFREDFPITSSP--DFQI----H--TFSTKSILIMRQVFMED 200 (283)
Q Consensus 131 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~--g~p~~~~~W~k~~~~~~~~~--~~~~----~--~~~~~~~l~i~~~~~~d 200 (283)
..+|.............+..+.+.|.+. +.|.+++.|+.++....... ...+ . .....+.+.+......+
T Consensus 95 ~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~ 174 (741)
T KOG3515|consen 95 DYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKAD 174 (741)
T ss_pred ccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecC
Confidence 5566555444445667788999999764 45778999999876543211 1100 0 00123357777777899
Q ss_pred CEEEEEEEEeCCc---eeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEE-eeCCCeeEEeeCCEE
Q psy14060 201 SGVFAVIAENRGG---KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKIS-ATKPLDVYWLKVSSL 276 (283)
Q Consensus 201 ~G~Y~C~a~n~~g---~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~g~~ 276 (283)
.|+|+|.+.|... .......+.+.... ....+..........+|+.+.|.|.+. |+|.++++|+++.+.
T Consensus 175 ~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~-------~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~ 247 (741)
T KOG3515|consen 175 NGNYTCPANNRNSPGLSFAKQLTIIVEAPC-------KGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRP 247 (741)
T ss_pred CceeEcccccccCccccccceeEeeccccc-------ccceecchhhcCcccccceEEEEehhhcCCcchhhhhcccccc
Confidence 9999999998532 23333344443310 112222223336788999999999775 578889999999877
Q ss_pred ecCC
Q psy14060 277 SDVK 280 (283)
Q Consensus 277 l~~~ 280 (283)
...+
T Consensus 248 ~~~~ 251 (741)
T KOG3515|consen 248 QSES 251 (741)
T ss_pred chhh
Confidence 6654
No 103
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.20 E-value=1.4e-10 Score=78.08 Aligned_cols=77 Identities=14% Similarity=0.234 Sum_probs=59.3
Q ss_pred eeecCCCcEEEEEEEeee-----cCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEE
Q psy14060 143 CRAFEQDQARFEVEFDGD-----PLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC 217 (283)
Q Consensus 143 ~~~~~g~~v~l~C~~~g~-----p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 217 (283)
..+..|.++.|.|...+. |.|.+.|||++.++...... +. ....|.|.++..+|+|.|+|.+.|..+....
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~-~~---~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~ 80 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKR-FV---KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQY 80 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccE-Ee---cCCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence 567789999999987542 56899999999998764432 22 3347999999999999999999999877665
Q ss_pred EEEEEE
Q psy14060 218 SANLVV 223 (283)
Q Consensus 218 ~~~l~v 223 (283)
.+...+
T Consensus 81 ~~t~t~ 86 (92)
T cd05757 81 NVTRTI 86 (92)
T ss_pred EEEEEE
Confidence 544433
No 104
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.16 E-value=4.4e-10 Score=77.08 Aligned_cols=74 Identities=11% Similarity=0.086 Sum_probs=53.0
Q ss_pred CCceeeecCCeeeecCcEEEEEEEccCccce-EEeec-------------CCCEEEEEcCCEEEEEEccCCCCCCeEEEE
Q psy14060 49 EPSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RKITA-------------TETTEMEHKGKIQERVVDASELDDDGYYAI 114 (283)
Q Consensus 49 ~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~~~~-------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 114 (283)
+|.+.......+.+|+.++|.|.+.|.|... .|... ..++.+........|.|.+++.+|+|.|+|
T Consensus 2 ~p~i~~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C 81 (98)
T cd05870 2 QPHIIQLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDC 81 (98)
T ss_pred CCEEEeeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEE
Confidence 3444444444577889999999999999432 33221 124444443456789999999999999999
Q ss_pred EEEeccee
Q psy14060 115 TERKYYAL 122 (283)
Q Consensus 115 ~a~n~~~~ 122 (283)
.|.|..|.
T Consensus 82 ~A~N~~G~ 89 (98)
T cd05870 82 EAASRIGG 89 (98)
T ss_pred EEeccCCc
Confidence 99999884
No 105
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.13 E-value=4e-10 Score=74.60 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=54.1
Q ss_pred CceeecCCCcEEEEEEEee-ecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060 141 QPCRAFEQDQARFEVEFDG-DPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK 216 (283)
Q Consensus 141 ~~~~~~~g~~v~l~C~~~g-~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 216 (283)
....+.+|++++|.|.+.+ .+.+.+.|||++..+... .....|.|.+++.+|+|.|+|.+.+..+...
T Consensus 7 p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~ 75 (83)
T cd05753 7 PSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSYDYS 75 (83)
T ss_pred CcceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeCCceec
Confidence 3457889999999999854 466789999999866421 1234699999999999999999999887544
No 106
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.13 E-value=2.8e-10 Score=76.68 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=51.0
Q ss_pred eeeecCcEEEEEEEccCcc-ce------EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 59 EIHTAKSQQVQKEKKGDKE-IV------RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~~-i~------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
.+.+|+.+.|.|.+.|.|. +. ..+....++.+...+....|.|.++..+|+|.|+|.|.|..|..
T Consensus 11 ~v~~G~~v~l~C~~~G~P~~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 11 ELSVGESKFFTCTAIGEPESIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred EEcCCCeEEEEEEEEEeCCeEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 4778889999999999984 22 22233356666656667799999999999999999999998853
No 107
>smart00409 IG Immunoglobulin.
Probab=99.10 E-value=5.4e-09 Score=69.21 Aligned_cols=82 Identities=26% Similarity=0.481 Sum_probs=66.1
Q ss_pred ceeecCCCcEEEEEEEeeecCCEEEEEeC-CEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060 142 PCRAFEQDQARFEVEFDGDPLPTIKWFRE-DFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN 220 (283)
Q Consensus 142 ~~~~~~g~~v~l~C~~~g~p~~~~~W~k~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 220 (283)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.++..+|.|.|.|.+.+..+.......
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 45677899999999998877889999998 87776555666655555678999999999999999999988777666555
Q ss_pred EEE
Q psy14060 221 LVV 223 (283)
Q Consensus 221 l~v 223 (283)
|.|
T Consensus 83 l~V 85 (86)
T smart00409 83 LTV 85 (86)
T ss_pred EEE
Confidence 544
No 108
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.10 E-value=5.4e-09 Score=69.21 Aligned_cols=82 Identities=26% Similarity=0.481 Sum_probs=66.1
Q ss_pred ceeecCCCcEEEEEEEeeecCCEEEEEeC-CEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060 142 PCRAFEQDQARFEVEFDGDPLPTIKWFRE-DFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN 220 (283)
Q Consensus 142 ~~~~~~g~~v~l~C~~~g~p~~~~~W~k~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 220 (283)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.++..+|.|.|.|.+.+..+.......
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 45677899999999998877889999998 87776555666655555678999999999999999999988777666555
Q ss_pred EEE
Q psy14060 221 LVV 223 (283)
Q Consensus 221 l~v 223 (283)
|.|
T Consensus 83 l~V 85 (86)
T smart00410 83 LTV 85 (86)
T ss_pred EEE
Confidence 544
No 109
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.07 E-value=1.8e-09 Score=71.94 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=50.7
Q ss_pred eeeecCcEEEEEEEccCccce-------EEeec-CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 59 EIHTAKSQQVQKEKKGDKEIV-------RKITA-TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~~i~-------~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
.+.+|+.+.|.|.+.|.|.+. ..+.. ..++.+........|.|.++..+|+|.|+|.|.|..|..
T Consensus 6 ~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~ 78 (86)
T cd05894 6 VVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGED 78 (86)
T ss_pred EEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcE
Confidence 366788999999999999443 23322 235666655567889999999999999999999999853
No 110
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.06 E-value=1.3e-09 Score=73.51 Aligned_cols=72 Identities=13% Similarity=0.106 Sum_probs=53.1
Q ss_pred eecCCCcEEEEEEEeeecCCEEEEEeCCEec-C-------------CCCCeEEEE---eCCEEEEEEcCCCCCCCEEEEE
Q psy14060 144 RAFEQDQARFEVEFDGDPLPTIKWFREDFPI-T-------------SSPDFQIHT---FSTKSILIMRQVFMEDSGVFAV 206 (283)
Q Consensus 144 ~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~-~-------------~~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y~C 206 (283)
.+..|++++|.|..++.+.+.+.|++++... . ...++.... ......|.|.++..+|+|.|+|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 4678999999999998899999999766321 1 111222222 2334679999999999999999
Q ss_pred EEEeCCcee
Q psy14060 207 IAENRGGKA 215 (283)
Q Consensus 207 ~a~n~~g~~ 215 (283)
.+.|..+..
T Consensus 83 ~v~~~~~~~ 91 (94)
T cd07690 83 EVEDKKEEV 91 (94)
T ss_pred EECCccceE
Confidence 998876553
No 111
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.06 E-value=1.5e-09 Score=72.77 Aligned_cols=72 Identities=14% Similarity=0.258 Sum_probs=49.5
Q ss_pred cCcEEEEEEEccCccce-EEeec-------CCCEEEEE----cCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccC
Q psy14060 63 AKSQQVQKEKKGDKEIV-RKITA-------TETTEMEH----KGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQK 129 (283)
Q Consensus 63 g~~v~l~C~~~g~~~i~-~~~~~-------~~~~~~~~----~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~ 129 (283)
|+.++|.|.+.|.|.+. .|... ..++.+.. ......|.|.++..+|+|.|+|.|.|..|. .....+.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 67899999999998543 33221 23554432 122367999999999999999999999994 3344454
Q ss_pred CCCCC
Q psy14060 130 PAKPP 134 (283)
Q Consensus 130 ~~~~p 134 (283)
+..+|
T Consensus 81 V~~~P 85 (88)
T cd05735 81 VQEPP 85 (88)
T ss_pred EeCCC
Confidence 44444
No 112
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.06 E-value=4.8e-10 Score=75.46 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=55.1
Q ss_pred CceeecCCCcEEEEEEE-eeecCCEEEEEeCCEec--CCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060 141 QPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPI--TSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA 215 (283)
Q Consensus 141 ~~~~~~~g~~v~l~C~~-~g~p~~~~~W~k~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 215 (283)
....+.+|+.+.|.|.. .|.|.+.+.|++++..+ ....+..+.. ....|.|.++..+|+|.|+|.|.|.....
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~--~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ--TNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC--CCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 44568889999999976 67799999999998754 2222222222 23469999999999999999999976443
No 113
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.06 E-value=3.2e-09 Score=72.34 Aligned_cols=81 Identities=11% Similarity=0.172 Sum_probs=57.3
Q ss_pred CceeecCCCcEEEEEEEeeecCCEEEEEeCCEec--------CCCCCeEEEE-eCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060 141 QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPI--------TSSPDFQIHT-FSTKSILIMRQVFMEDSGVFAVIAENR 211 (283)
Q Consensus 141 ~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~--------~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 211 (283)
+.+.+..|+++.|.|.+.+.+.+.+.|++.+..+ ....++.+.. ......|.|.++..+|+|.|+|.+.+.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence 4567899999999999988888899998632211 1123444422 223467999999999999999999876
Q ss_pred CceeEEEEEEE
Q psy14060 212 GGKAKCSANLV 222 (283)
Q Consensus 212 ~g~~~~~~~l~ 222 (283)
.. ....+.|.
T Consensus 85 ~~-~~~~~~~~ 94 (95)
T cd05717 85 PV-QTAKATVT 94 (95)
T ss_pred CC-ceEEEEEE
Confidence 42 34555554
No 114
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.05 E-value=1.2e-09 Score=67.93 Aligned_cols=63 Identities=30% Similarity=0.647 Sum_probs=50.1
Q ss_pred CCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060 147 EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG 213 (283)
Q Consensus 147 ~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 213 (283)
+|+.+.|.|.+.+.+.+.+.|++++..+.. .... ......|.|.++...|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRL--SASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEE--ecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 478899999988888899999999888762 2111 22345799999999999999999988654
No 115
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.05 E-value=2e-09 Score=72.88 Aligned_cols=65 Identities=17% Similarity=0.313 Sum_probs=49.9
Q ss_pred eeeecCcEEEEEEEccCcc--ce-----EEeecCCCEEEEEc-CCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 59 EIHTAKSQQVQKEKKGDKE--IV-----RKITATETTEMEHK-GKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~~--i~-----~~~~~~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
.+.+|++++|.|.+.|.|. +. ..+....++.+... +....|.|.+++.+|+|.|+|.|.|..|..
T Consensus 12 ~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 84 (92)
T cd05737 12 TIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGE 84 (92)
T ss_pred EEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcc
Confidence 3677889999999999984 32 33444455565543 446789999999999999999999998853
No 116
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.04 E-value=1.8e-09 Score=72.77 Aligned_cols=65 Identities=15% Similarity=0.287 Sum_probs=55.4
Q ss_pred eeeecCcEEEEEEEccCcc--ce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 59 EIHTAKSQQVQKEKKGDKE--IV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~~--i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
.+.+|+.+.|.|.+.|.|. +. ..+....++.+...+....|.|.++..+|+|.|+|.+.|..+..
T Consensus 11 ~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~ 82 (90)
T PF07679_consen 11 TVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEA 82 (90)
T ss_dssp EEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEE
T ss_pred EEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEE
Confidence 4677889999999999873 33 55666788888888899999999999999999999999998743
No 117
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.04 E-value=2.5e-09 Score=71.29 Aligned_cols=77 Identities=14% Similarity=0.124 Sum_probs=56.5
Q ss_pred CCcEEEEEEEeeecC--CEEEEEeCCEecCCC---CCeE---EEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEE
Q psy14060 148 QDQARFEVEFDGDPL--PTIKWFREDFPITSS---PDFQ---IHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSA 219 (283)
Q Consensus 148 g~~v~l~C~~~g~p~--~~~~W~k~~~~~~~~---~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 219 (283)
|+++.|.|.+.+.+. ..+.|...+...... ...+ .......+.|.|.++..+|+|.|+|.|.|..+......
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 678999999987554 578998876543211 1100 01122356899999999999999999999999888888
Q ss_pred EEEEE
Q psy14060 220 NLVVE 224 (283)
Q Consensus 220 ~l~v~ 224 (283)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 88775
No 118
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.04 E-value=2.7e-09 Score=72.93 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=51.6
Q ss_pred CceeeecCCeeeecCcEEEEEEEccCccce-EEeec-----------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060 50 PSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RKITA-----------TETTEMEHKGKIQERVVDASELDDDGYYAITER 117 (283)
Q Consensus 50 p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~~~~-----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 117 (283)
|.+.......+.+|+.++|.|.+.|.|... .|... ..++.+........|.|.+++.+|+|.|.|.|.
T Consensus 3 P~i~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 82 (96)
T cd05732 3 PKITYLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEAS 82 (96)
T ss_pred ccceecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEE
Confidence 334333334577888999999999998322 33221 123333333456789999999999999999999
Q ss_pred ecceee
Q psy14060 118 KYYALS 123 (283)
Q Consensus 118 n~~~~~ 123 (283)
|..|..
T Consensus 83 N~~G~~ 88 (96)
T cd05732 83 NRIGGD 88 (96)
T ss_pred eCCCCc
Confidence 998853
No 119
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.04 E-value=6.8e-09 Score=69.99 Aligned_cols=83 Identities=17% Similarity=0.293 Sum_probs=67.0
Q ss_pred ceeecCCCcEEEEEEEeeecCCE-EEEEeCCEecCCCCCeEEEEeC-----CEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060 142 PCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSPDFQIHTFS-----TKSILIMRQVFMEDSGVFAVIAENRGGKA 215 (283)
Q Consensus 142 ~~~~~~g~~v~l~C~~~g~p~~~-~~W~k~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 215 (283)
.+.+..|+.+.|.|.+.++|.|. +.|.+++..+.......+.... -.+.|.+.++..++.|.|+|.|.|.....
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 45789999999999999999997 9999998876543332222221 23689999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy14060 216 KCSANLVVE 224 (283)
Q Consensus 216 ~~~~~l~v~ 224 (283)
+..+.|.|.
T Consensus 92 s~tF~l~v~ 100 (101)
T cd05860 92 SVTFNVYVN 100 (101)
T ss_pred EEEEEEEEe
Confidence 888888764
No 120
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.01 E-value=3.3e-09 Score=69.63 Aligned_cols=78 Identities=31% Similarity=0.531 Sum_probs=57.6
Q ss_pred CeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG 213 (283)
Q Consensus 134 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 213 (283)
|.+...+ ..+..|+.+.|.|.+.+.|.+.+.|++++..+..... .+.+..+..+|.|.|.|.+.+..+
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~g~y~C~~~~~~~ 69 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN----------GLFIPNVSPEDSGNYTCRASNGSG 69 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS----------EEEESSEEGGGTEEEEEEEEETTE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee----------eeeeeeeccccCEEEEEEEEeCCC
Confidence 4444333 5688999999999999888899999999877653211 167788899999999999999665
Q ss_pred e-eEEEEEEEE
Q psy14060 214 K-AKCSANLVV 223 (283)
Q Consensus 214 ~-~~~~~~l~v 223 (283)
. .+..+.|.|
T Consensus 70 ~~~s~~~~v~V 80 (80)
T PF13895_consen 70 SNTSTSVNVTV 80 (80)
T ss_dssp EEEEEEEEEEE
T ss_pred CeEeeeEEeeC
Confidence 3 344455543
No 121
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.01 E-value=2.8e-09 Score=69.74 Aligned_cols=61 Identities=8% Similarity=0.149 Sum_probs=48.0
Q ss_pred cCcEEEEEEEccCccce-E------EeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 63 AKSQQVQKEKKGDKEIV-R------KITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 63 g~~v~l~C~~~g~~~i~-~------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
|+++.|.|.+.|.|... . .+....++.+...+....|.|.++..+|+|.|+|.|.|..|..
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 68 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMV 68 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEE
Confidence 57899999999998433 2 2333456666666667899999999999999999999998854
No 122
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.01 E-value=1.1e-09 Score=70.47 Aligned_cols=58 Identities=7% Similarity=-0.029 Sum_probs=44.4
Q ss_pred cCcEEEEEEEccCccce-------EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 63 AKSQQVQKEKKGDKEIV-------RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 63 g~~v~l~C~~~g~~~i~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
|+.++|.|.+.|.|... ..+....++.+.. ...|.|.+++.+|+|.|+|.|.|..|..
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~A~N~~G~~ 65 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWD---DGSLEILNITKLDEGSYTCFAENNRGKA 65 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcC---CCEEEECcCChhHCEEEEEEEECCCCce
Confidence 56899999999999433 2333445555542 3479999999999999999999998853
No 123
>PHA03376 BARF1; Provisional
Probab=99.00 E-value=8.1e-09 Score=76.26 Aligned_cols=122 Identities=15% Similarity=0.196 Sum_probs=76.9
Q ss_pred ceeecCCCcEEEEEEEee---ecCCEEEEEeCCE----e-c------------CCCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060 142 PCRAFEQDQARFEVEFDG---DPLPTIKWFREDF----P-I------------TSSPDFQIHTFSTKSILIMRQVFMEDS 201 (283)
Q Consensus 142 ~~~~~~g~~v~l~C~~~g---~p~~~~~W~k~~~----~-~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~ 201 (283)
.+....|+.+.|.|.... .+.-.++|+|.+. . + ....++.+....++.+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 456778999999998752 2445789999532 1 1 111223344445677899999999999
Q ss_pred EEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeC
Q psy14060 202 GVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKV 273 (283)
Q Consensus 202 G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~ 273 (283)
|+|+|..............|.+.. |-.+...........-+..++.|.+-|.|.|.++|+-|
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V~----------~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~ 161 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVVK----------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMP 161 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeeee----------cceEEEEeccccCCCCCeeEEEEecCCcCCchheeccc
Confidence 999999986554333333333321 22222211111112246678999988999999999875
No 124
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.99 E-value=4.1e-09 Score=70.97 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=55.3
Q ss_pred eeecCCCcEEEEEEEeeecCCEEEEEeCCE--ec----CCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEE-eCCcee
Q psy14060 143 CRAFEQDQARFEVEFDGDPLPTIKWFREDF--PI----TSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE-NRGGKA 215 (283)
Q Consensus 143 ~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~--~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~-n~~g~~ 215 (283)
+...+|+++.|.|.. +.|.|.+.||++.. .. ....++... ...|.|.++..+|+|.|+|.+. |..+..
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~----~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~ 80 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT----ERGLLLRSLQRSDAGVYTCTAVEHSFSQT 80 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe----cCeEEEeeCChhHCEEEEEEEEccCCeEE
Confidence 457889999999996 46889999998432 11 112233221 1349999999999999999998 566666
Q ss_pred EEEEEEEEE
Q psy14060 216 KCSANLVVE 224 (283)
Q Consensus 216 ~~~~~l~v~ 224 (283)
....+|.|.
T Consensus 81 ~~~~~l~v~ 89 (91)
T cd05871 81 LAKYTLHVI 89 (91)
T ss_pred EEEEEEEEe
Confidence 666777765
No 125
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.99 E-value=8e-09 Score=70.65 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=48.9
Q ss_pred CceeeecCCeee-ecCcEEEEEEEccCccce-EEeecC-----------CCEEEEEcCCEEEEEEccCCCCCCeEEEEEE
Q psy14060 50 PSASGVHGKEIH-TAKSQQVQKEKKGDKEIV-RKITAT-----------ETTEMEHKGKIQERVVDASELDDDGYYAITE 116 (283)
Q Consensus 50 p~~~~~~~~~v~-~g~~v~l~C~~~g~~~i~-~~~~~~-----------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 116 (283)
|.+.......+. .|+.++|.|.+.|.|... .|.... .++.+........|.|.+++.+|+|.|+|.|
T Consensus 3 p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A 82 (97)
T cd05869 3 PKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTA 82 (97)
T ss_pred ceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEE
Confidence 444433333233 468899999999998332 332211 2333333334578999999999999999999
Q ss_pred Eeccee
Q psy14060 117 RKYYAL 122 (283)
Q Consensus 117 ~n~~~~ 122 (283)
.|..|.
T Consensus 83 ~N~~G~ 88 (97)
T cd05869 83 SNTIGQ 88 (97)
T ss_pred ecCCCC
Confidence 999984
No 126
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.98 E-value=2.7e-09 Score=70.98 Aligned_cols=71 Identities=20% Similarity=0.194 Sum_probs=47.3
Q ss_pred CcEEEEEEEccCccc--e-EEeecC---------CCEE-EEEcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccC
Q psy14060 64 KSQQVQKEKKGDKEI--V-RKITAT---------ETTE-MEHKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQK 129 (283)
Q Consensus 64 ~~v~l~C~~~g~~~i--~-~~~~~~---------~~~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~ 129 (283)
+.+.|.|.+.|+|.. . .|...+ .++. +........|.|.+++.+|+|.|+|.|.|..+. .....+.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 358999999999942 2 232221 1221 121223568999999999999999999999883 4445555
Q ss_pred CCCCC
Q psy14060 130 PAKPP 134 (283)
Q Consensus 130 ~~~~p 134 (283)
+..||
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 55444
No 127
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.97 E-value=1.6e-09 Score=70.12 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=43.6
Q ss_pred ecCcEEEEEEEccCccce-EEe------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 62 TAKSQQVQKEKKGDKEIV-RKI------TATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 62 ~g~~v~l~C~~~g~~~i~-~~~------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
+|+.+.|.|.+.|.|... .|. ....+..+. ....|.|.+++.+|+|.|+|.|.|..|..
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 66 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL---SSGTLRISRVALHDQGQYECQAVNIVGSQ 66 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc---cCCeEEEeeCCHHhCEEEEEEEEeCCCce
Confidence 477899999999999433 332 222333332 23479999999999999999999998843
No 128
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.96 E-value=7.3e-09 Score=70.12 Aligned_cols=65 Identities=9% Similarity=0.201 Sum_probs=51.6
Q ss_pred eeeecCcEEEEEEEccCccce-------EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 59 EIHTAKSQQVQKEKKGDKEIV-------RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~~i~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
.+.+|+.+.|.|.+.|.|... ..+....++.+........|.|.++..+|+|.|.|.+.|..|..
T Consensus 14 ~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 85 (92)
T cd05747 14 TVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQ 85 (92)
T ss_pred EEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCE
Confidence 477788999999999999433 23334456666655567899999999999999999999998853
No 129
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.94 E-value=2.7e-09 Score=66.92 Aligned_cols=61 Identities=21% Similarity=0.355 Sum_probs=45.1
Q ss_pred CCcEEEEEEE-eeecCCEEEEEeCCEecCCCCCeEEEEeCCEE--EEEEcCCCCCCCEEEEEEE
Q psy14060 148 QDQARFEVEF-DGDPLPTIKWFREDFPITSSPDFQIHTFSTKS--ILIMRQVFMEDSGVFAVIA 208 (283)
Q Consensus 148 g~~v~l~C~~-~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~Y~C~a 208 (283)
|+++.|.|.+ .+.+...+.|++++.................. .|.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7889999999 66677899999998866543222222222211 3999999999999999986
No 130
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.93 E-value=9.3e-09 Score=66.54 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=46.6
Q ss_pred cEEEEEEEccCccce-------EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 65 SQQVQKEKKGDKEIV-------RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 65 ~v~l~C~~~g~~~i~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
++.|.|.+.|.|.+. ..+....++.+........|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 65 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGE 65 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCcc
Confidence 378999999999443 3333455667666666889999999999999999999999885
No 131
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.92 E-value=7.1e-09 Score=70.10 Aligned_cols=63 Identities=11% Similarity=0.159 Sum_probs=46.0
Q ss_pred eeeecCcEEEEEEEccCccceEEee-------cCCCEEEEE-cCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 59 EIHTAKSQQVQKEKKGDKEIVRKIT-------ATETTEMEH-KGKIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~~i~~~~~-------~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
.+..|+++.|.|.+.|.|....|.. ...++.+.. ......|+|.+++.+|+|.|+|.|.|..+
T Consensus 11 ~v~~G~~~~l~C~~~G~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g 81 (92)
T cd04977 11 EISVGESKFFLCQVIGEPKDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG 81 (92)
T ss_pred EECCCCeEEEEEEeEeeCCeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence 4778899999999999884223332 122333322 23457899999999999999999999865
No 132
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.92 E-value=7.1e-09 Score=67.05 Aligned_cols=58 Identities=7% Similarity=0.117 Sum_probs=43.4
Q ss_pred EEEEEEEccCccce-------EEeec-CCCEEEEEc-CCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 66 QQVQKEKKGDKEIV-------RKITA-TETTEMEHK-GKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 66 v~l~C~~~g~~~i~-------~~~~~-~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
|.|.|.+.|.|... +.+.. .+++.+... ++..+|.|.++..+|+|.|+|.|.|..|..
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~ 67 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVA 67 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeE
Confidence 57999999999433 34432 345555433 344689999999999999999999999843
No 133
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.92 E-value=3.1e-09 Score=71.35 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=55.8
Q ss_pred CCceeecCCCcEEEEEE-EeeecCCEEEEEeCCEe-cCCCCCeEEEEeCCEEEEEEcCCCCCCCE-EEEEEEEeCCce
Q psy14060 140 IQPCRAFEQDQARFEVE-FDGDPLPTIKWFREDFP-ITSSPDFQIHTFSTKSILIMRQVFMEDSG-VFAVIAENRGGK 214 (283)
Q Consensus 140 ~~~~~~~~g~~v~l~C~-~~g~p~~~~~W~k~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~ 214 (283)
.+...+.+|+.+.|.|. ..|+|.|.+.|++++.. +....++.+.. ...|.|.++..+|+| .|.|.|.|....
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~---~GnL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQ---NGNLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECC---CceEEEEEEehhhCCCCeEEEEEccccc
Confidence 45678999999999997 58999999999987654 33333433332 246999999999999 899999987533
No 134
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.91 E-value=4.4e-09 Score=70.52 Aligned_cols=62 Identities=15% Similarity=0.055 Sum_probs=45.0
Q ss_pred eeeecCcEEEEEEEccCccce-EEeecCC----CEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 59 EIHTAKSQQVQKEKKGDKEIV-RKITATE----TTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~~~----~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
.+.+|+.+.|.|.+.|.|... .|..... ...+... ...|.|.+++.+|+|.|+|.|.|..|.
T Consensus 12 ~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 78 (88)
T cd05851 12 YALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMS--GAVLKIFNIQPEDEGTYECEAENIKGK 78 (88)
T ss_pred EEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecC--CCEEEECcCChhhCEEEEEEEEcCCCc
Confidence 466788999999999999433 3333221 1122222 247999999999999999999999884
No 135
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.91 E-value=7.7e-09 Score=66.94 Aligned_cols=58 Identities=12% Similarity=0.254 Sum_probs=42.7
Q ss_pred EEEEEEEccCccce-------EEeec-CCCEEEEEcC-CEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 66 QQVQKEKKGDKEIV-------RKITA-TETTEMEHKG-KIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 66 v~l~C~~~g~~~i~-------~~~~~-~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
|+|.|.+.|.|... ..+.. ..++.+...+ +...|.|.++..+|+|.|+|.|.|..|..
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 67 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIV 67 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE
Confidence 57999999999433 22322 3455654432 34579999999999999999999999853
No 136
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.91 E-value=8.7e-09 Score=69.40 Aligned_cols=72 Identities=13% Similarity=0.213 Sum_probs=53.4
Q ss_pred eeecCCCcEEEEEEE-ee----ecCCEEEEEeCCEecCCCC-CeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060 143 CRAFEQDQARFEVEF-DG----DPLPTIKWFREDFPITSSP-DFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK 216 (283)
Q Consensus 143 ~~~~~g~~v~l~C~~-~g----~p~~~~~W~k~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 216 (283)
+.+..|.+..|.|.- .+ .+.+.++|||++.++.... ++... .....|.|.++..+|+|.|+|.+.+..+...
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~--~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSL--KGSTYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEec--CCCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 456778899999973 33 3567999999999887543 22221 1233599999999999999999999876543
No 137
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.90 E-value=7.4e-09 Score=71.06 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=46.1
Q ss_pred eeeecCcEEEEEEEcc-Ccc--ce-----EEeecCCCEEEEEc-----CCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 59 EIHTAKSQQVQKEKKG-DKE--IV-----RKITATETTEMEHK-----GKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g-~~~--i~-----~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
.+.+|+++.|.|.+.| .|. +. ..+.......+... .....|.|.++..+|+|.|+|.|.|..|..
T Consensus 14 ~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 14 FVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred EEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 4677889999999999 773 32 23332222222211 124789999999999999999999998853
No 138
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.89 E-value=5.6e-09 Score=69.59 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=46.3
Q ss_pred CcEEEEEEEccCc--cce-EEeecCCCEE----------EEEcCCEEEEEEccCCCCCCeEEEEEEEeccee-eeeeccC
Q psy14060 64 KSQQVQKEKKGDK--EIV-RKITATETTE----------MEHKGKIQERVVDASELDDDGYYAITERKYYAL-SDLSEQK 129 (283)
Q Consensus 64 ~~v~l~C~~~g~~--~i~-~~~~~~~~~~----------~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~~ 129 (283)
+++.|.|.+.|.| .+. .|...+..+. .........|.|.+++.+|+|.|+|.|.|..+. .....+.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 4689999999998 333 3332221111 111123567999999999999999999998873 3444455
Q ss_pred CCCCC
Q psy14060 130 PAKPP 134 (283)
Q Consensus 130 ~~~~p 134 (283)
+..||
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 54444
No 139
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.89 E-value=2.9e-09 Score=70.33 Aligned_cols=71 Identities=18% Similarity=0.200 Sum_probs=46.8
Q ss_pred CcEEEEEEEccCc--cce-------EEeec---CCCEEEEEc-CCEEEEEEccCCCCCCeEEEEEEEecce-eeeeeccC
Q psy14060 64 KSQQVQKEKKGDK--EIV-------RKITA---TETTEMEHK-GKIQERVVDASELDDDGYYAITERKYYA-LSDLSEQK 129 (283)
Q Consensus 64 ~~v~l~C~~~g~~--~i~-------~~~~~---~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~n~~~-~~~~~~~~ 129 (283)
++++|.|.+.+++ .++ +.|.. ..++..... .....|.|.+++.+|+|+|+|.|.|..+ ......+.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 4689999998866 443 23321 123222110 1235799999999999999999999987 34455566
Q ss_pred CCCCC
Q psy14060 130 PAKPP 134 (283)
Q Consensus 130 ~~~~p 134 (283)
+..||
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 65555
No 140
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.88 E-value=1.9e-08 Score=67.76 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=46.7
Q ss_pred eeecCcEEEEEEEccCccce-EEeec------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 60 IHTAKSQQVQKEKKGDKEIV-RKITA------TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 60 v~~g~~v~l~C~~~g~~~i~-~~~~~------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
+..|+.+.|.|.+.|.|... .|... ..............|.|.++..+|.|.|+|.|.|..|.
T Consensus 12 v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~ 81 (90)
T cd04972 12 VYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQ 81 (90)
T ss_pred EcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCc
Confidence 66788999999999999433 33322 22222233334678999999999999999999999885
No 141
>PHA03376 BARF1; Provisional
Probab=98.87 E-value=1.2e-07 Score=70.14 Aligned_cols=88 Identities=13% Similarity=0.174 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce-eeeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeeecCC
Q psy14060 85 TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA-LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLP 163 (283)
Q Consensus 85 ~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~ 163 (283)
..++.+-.+.++.+|.|.+++.+|.|.|+|....... ......+....|..+......-....-+..++.|.+-|.|.|
T Consensus 75 RGrtD~~~~~gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P 154 (221)
T PHA03376 75 RGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHP 154 (221)
T ss_pred ccEEEEEecCCeEEEEEEeeeecCCceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCc
Confidence 3444443445889999999999999999998766543 222222222222222222211112224567899997788999
Q ss_pred EEEEEeCCE
Q psy14060 164 TIKWFREDF 172 (283)
Q Consensus 164 ~~~W~k~~~ 172 (283)
.++|..+..
T Consensus 155 ~~~Wle~~~ 163 (221)
T PHA03376 155 HVQWLMPEG 163 (221)
T ss_pred hheeccccC
Confidence 999988654
No 142
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.87 E-value=6.7e-09 Score=67.01 Aligned_cols=58 Identities=9% Similarity=0.083 Sum_probs=43.5
Q ss_pred cCcEEEEEEEccCccce-------EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 63 AKSQQVQKEKKGDKEIV-------RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 63 g~~v~l~C~~~g~~~i~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
|+.+.|.|.+.|.|... ..+....++.+.. ...|.|.+++.+|+|.|+|.+.|..|..
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 65 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWP---DGSLEILNVTKSDEGKYTCFAENFFGKA 65 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECC---CCeEEEccCChhHCEEEEEEEECCCCce
Confidence 56899999999988333 2333344555432 3469999999999999999999998853
No 143
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.87 E-value=8.2e-08 Score=64.74 Aligned_cols=70 Identities=13% Similarity=0.150 Sum_probs=54.2
Q ss_pred CceeecCCCcEEEEEEEeeecCCEEEEEeCCEec--------CCCCCeEEEE-eCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060 141 QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPI--------TSSPDFQIHT-FSTKSILIMRQVFMEDSGVFAVIAEN 210 (283)
Q Consensus 141 ~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~--------~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n 210 (283)
.++.+.+|+++.|.|.+.+.....+.|++.+..+ ....++.... .+...+|.|.++..+|.|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 4578899999999999988766677887665332 2345666554 45667899999999999999999865
No 144
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.86 E-value=1.1e-08 Score=69.48 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=46.1
Q ss_pred eeeecCcEEEEEEEccCcc-ce-EEee-cC-------CCEEEEE-cCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 59 EIHTAKSQQVQKEKKGDKE-IV-RKIT-AT-------ETTEMEH-KGKIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~~-i~-~~~~-~~-------~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
.+.+|+.++|.|.+.|.|. +. .|.. .. .++.+.. ......|.|.+++.+|+|.|+|.|.|..+
T Consensus 11 ~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~ 84 (96)
T cd05865 11 EISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDE 84 (96)
T ss_pred EECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCC
Confidence 4778899999999999983 33 4443 22 1333322 22357899999999999999999999973
No 145
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.85 E-value=2.4e-08 Score=65.76 Aligned_cols=76 Identities=14% Similarity=0.231 Sum_probs=57.8
Q ss_pred CceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060 141 QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN 220 (283)
Q Consensus 141 ~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 220 (283)
....+..|+++.|.|...+ +.+.+.|++++..+....++.....+ |.|..+..+|+|.|.|.+. ..|.....+.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~ 77 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSE-EEGFQQLVAS 77 (85)
T ss_pred eEEEEecCCCEEEECCCCC-CCccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEe-cCCCeEEEEE
Confidence 4567889999999999987 57899999999988765555544443 8899999999999999976 3344443333
Q ss_pred EE
Q psy14060 221 LV 222 (283)
Q Consensus 221 l~ 222 (283)
+.
T Consensus 78 y~ 79 (85)
T cd05872 78 YS 79 (85)
T ss_pred EE
Confidence 33
No 146
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.84 E-value=3.7e-08 Score=66.64 Aligned_cols=80 Identities=13% Similarity=0.204 Sum_probs=56.1
Q ss_pred CceeecCCCcEEEEEEEe------ee-----cCCEEEEEeCCEecCCCCC-----eEEEEeCCEEEEEEcCCCCCCCEEE
Q psy14060 141 QPCRAFEQDQARFEVEFD------GD-----PLPTIKWFREDFPITSSPD-----FQIHTFSTKSILIMRQVFMEDSGVF 204 (283)
Q Consensus 141 ~~~~~~~g~~v~l~C~~~------g~-----p~~~~~W~k~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~G~Y 204 (283)
....+.+|+.+.|.|... ++ ....+.|||++..+..... .++...+ ..|.|..+..+|+|.|
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~--~~Lwf~Pa~~eDSG~Y 85 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE--DSIWFRPAELQDSGLY 85 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC--CEEEEEeCChhhCeEE
Confidence 345788999999999861 11 2348999999755443221 1333322 3699999999999999
Q ss_pred EEEEEeCCceeEEEEEEE
Q psy14060 205 AVIAENRGGKAKCSANLV 222 (283)
Q Consensus 205 ~C~a~n~~g~~~~~~~l~ 222 (283)
+|.+.|...-...+..|+
T Consensus 86 ~C~~rN~t~C~~~~i~l~ 103 (104)
T cd05896 86 TCVLRNSTYCMKVSMSLT 103 (104)
T ss_pred EEEECCCCcceEEEEEEE
Confidence 999999876666555554
No 147
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.83 E-value=2.1e-08 Score=67.56 Aligned_cols=62 Identities=8% Similarity=0.077 Sum_probs=45.3
Q ss_pred eeeecCcEEEEEEEccCccce-EEee-----cCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 59 EIHTAKSQQVQKEKKGDKEIV-RKIT-----ATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~~i~-~~~~-----~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
.+.+|++++|.|.+.|.+ .. .|.. ...++.+.. ....|.|.+++.+|+|.|+|.|.|..|..
T Consensus 14 ~v~~g~~v~l~C~a~g~~-p~i~W~kng~~l~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 81 (91)
T cd05740 14 PPEDNQPVTLTCEAEGQA-TYIWWVNNGSLLVPPRLQLSN--DNRTLTFNNVTRSDTGHYQCEASNEVSNM 81 (91)
T ss_pred ccccCCcEEEEEEeCCCC-CEEEEEECCEECCCCCEEEeC--CCCEEEECcCChhhCEEEEEEEEcCCCCE
Confidence 477889999999999983 22 3322 123333332 33479999999999999999999998843
No 148
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.82 E-value=2e-08 Score=67.68 Aligned_cols=60 Identities=8% Similarity=0.071 Sum_probs=42.4
Q ss_pred cCcEEEEEEEccCccce-EEeecC----C-------C-EEEEE-------cCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 63 AKSQQVQKEKKGDKEIV-RKITAT----E-------T-TEMEH-------KGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 63 g~~v~l~C~~~g~~~i~-~~~~~~----~-------~-~~~~~-------~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
|+.++|.|.+.|.|... .|+... . . ..... .+....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 56799999999999444 554321 0 1 11111 123457999999999999999999999884
No 149
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.82 E-value=5.1e-08 Score=66.07 Aligned_cols=62 Identities=8% Similarity=0.052 Sum_probs=44.3
Q ss_pred eeeecCcEEEEEEEccCccce-EEeec--------------CCCEEEEEc-CCEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060 59 EIHTAKSQQVQKEKKGDKEIV-RKITA--------------TETTEMEHK-GKIQERVVDASELDDDGYYAITERKYY 120 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~--------------~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~n~~ 120 (283)
.+.+|+++.|.|.+.|.|... .|... ..++.+... .....|.|.+++.+|+|.|+|.+....
T Consensus 8 tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~~ 85 (95)
T cd05882 8 TVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTMP 85 (95)
T ss_pred EEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEeec
Confidence 477899999999999988433 33221 233333222 246899999999999999999887643
No 150
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.82 E-value=1.7e-08 Score=64.67 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=41.0
Q ss_pred cEEEEEEEccCccce-E------EeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 65 SQQVQKEKKGDKEIV-R------KITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 65 ~v~l~C~~~g~~~i~-~------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
+++|.|.+.|.|... . .+....++.+... ..|.|.+++.+|+|.|+|.|.|..|..
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~---~~l~i~~v~~~D~G~Y~C~A~N~~G~~ 63 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKE---HNLQVLGLVKSDEGFYQCIAENDVGNV 63 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEec---CCEEEEcCCcccCEEEEEEEEcCCCEE
Confidence 478999999998433 2 2333445554432 347788999999999999999998853
No 151
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.82 E-value=3.6e-08 Score=63.88 Aligned_cols=57 Identities=9% Similarity=0.115 Sum_probs=42.4
Q ss_pred EEEEEEEccCccce-------EEeec-CCCEEEEEc-CCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 66 QQVQKEKKGDKEIV-------RKITA-TETTEMEHK-GKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 66 v~l~C~~~g~~~i~-------~~~~~-~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
++|.|.+.|.|... +.+.. ..++.+... .+...|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 66 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGV 66 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCc
Confidence 57999999999433 33332 345555433 34567999999999999999999999984
No 152
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.81 E-value=3.5e-08 Score=65.66 Aligned_cols=64 Identities=11% Similarity=0.169 Sum_probs=45.4
Q ss_pred eeecCcEEEEEEEccCccce-EEeec------CCCE-EEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 60 IHTAKSQQVQKEKKGDKEIV-RKITA------TETT-EMEHKGKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 60 v~~g~~v~l~C~~~g~~~i~-~~~~~------~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
+..|+.+.|.|.+.|.|.+. .|... ..+. ..........|.|.++..+|+|.|+|.+.|..|..
T Consensus 6 v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~ 77 (85)
T cd05857 6 VPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI 77 (85)
T ss_pred cCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEE
Confidence 56788999999999998443 33322 2111 11112235679999999999999999999998853
No 153
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.80 E-value=3.9e-08 Score=66.47 Aligned_cols=65 Identities=18% Similarity=0.280 Sum_probs=47.4
Q ss_pred eeeecCcEEEEEEEccCccce-------EEeecCCCEEEEEc-CCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 59 EIHTAKSQQVQKEKKGDKEIV-------RKITATETTEMEHK-GKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~~i~-------~~~~~~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
.+.+|+.+.|.|.+.|.|... ..+....++.+... +....|.|.+++.+|+|.|+|.+.|..|..
T Consensus 12 ~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 84 (92)
T cd05891 12 TIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGE 84 (92)
T ss_pred EEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCce
Confidence 366788999999999888333 23333344444332 334689999999999999999999998853
No 154
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.79 E-value=1.9e-08 Score=66.96 Aligned_cols=60 Identities=15% Similarity=0.219 Sum_probs=45.5
Q ss_pred eeeecCcEEEEEEEccCccce-------EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 59 EIHTAKSQQVQKEKKGDKEIV-------RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~~i~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
.+.+|+.++|.|.+.|.|... ..+....++... ...|.|.++..+|+|.|+|.|.|..|.
T Consensus 10 ~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~ 76 (85)
T cd05728 10 EADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE----AGDLRITKLSLSDSGMYQCVAENKHGT 76 (85)
T ss_pred EEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe----CCEEEEeeCCHHHCEEEEEEEECCCCe
Confidence 477889999999999998433 233333344432 236899999999999999999999884
No 155
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.78 E-value=7.2e-08 Score=67.32 Aligned_cols=72 Identities=10% Similarity=0.030 Sum_probs=47.7
Q ss_pred cCcEEEEEEEccCccce-------EEeec-CCCEEEEE--cC--CEEEEEEccCC-CCCCeEEEEEEEeccee-eeeecc
Q psy14060 63 AKSQQVQKEKKGDKEIV-------RKITA-TETTEMEH--KG--KIQERVVDASE-LDDDGYYAITERKYYAL-SDLSEQ 128 (283)
Q Consensus 63 g~~v~l~C~~~g~~~i~-------~~~~~-~~~~~~~~--~~--~~~~L~i~~~~-~~D~G~Y~C~a~n~~~~-~~~~~~ 128 (283)
|+.++|.|.+.|.|.+. ..+.. ..++.+.. .+ ....|.|.+++ .+|.|.|+|.|.|..|. .....+
T Consensus 23 g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L 102 (109)
T cd05773 23 SSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQL 102 (109)
T ss_pred CCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEE
Confidence 45799999999999443 22221 22343221 11 24679999997 59999999999999985 334445
Q ss_pred CCCCCC
Q psy14060 129 KPAKPP 134 (283)
Q Consensus 129 ~~~~~p 134 (283)
.+..+|
T Consensus 103 ~~~~~p 108 (109)
T cd05773 103 VSTSRP 108 (109)
T ss_pred EecCCC
Confidence 555444
No 156
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.78 E-value=7.1e-08 Score=63.71 Aligned_cols=64 Identities=19% Similarity=0.223 Sum_probs=46.1
Q ss_pred EEEEEEEee-ecCCEEEEEeCCEecCCCCCeE-EEEeC----CEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060 151 ARFEVEFDG-DPLPTIKWFREDFPITSSPDFQ-IHTFS----TKSILIMRQVFMEDSGVFAVIAENRGGK 214 (283)
Q Consensus 151 v~l~C~~~g-~p~~~~~W~k~~~~~~~~~~~~-~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 214 (283)
+.|.|.+.| +|.+.++|++++..+....... ....+ ..+.|.+......|.|.|+|.|.|....
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~ 71 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALP 71 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCC
Confidence 689999987 6888999999999876432111 11111 1346788877778899999999987644
No 157
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.77 E-value=3.5e-08 Score=64.07 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=47.4
Q ss_pred EEEEEEEe-eecCCEEEEEeCCEecCCCCCeEE--EEeCCEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060 151 ARFEVEFD-GDPLPTIKWFREDFPITSSPDFQI--HTFSTKSILIMRQVFMEDSGVFAVIAENRGGK 214 (283)
Q Consensus 151 v~l~C~~~-g~p~~~~~W~k~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 214 (283)
+.|.|... +.|.+.++|||++.++........ ......++|.|.....+|.+.|+|.|.|..+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 68999985 568899999999999865321000 00012346999999999999999999998765
No 158
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.76 E-value=1.4e-08 Score=63.98 Aligned_cols=55 Identities=7% Similarity=-0.067 Sum_probs=41.8
Q ss_pred EEEEEEEccCccce-EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 66 QQVQKEKKGDKEIV-RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 66 v~l~C~~~g~~~i~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
++|.|.+.|.|.+. .|...+.... .......|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~--~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~ 56 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLIS--GKHSQHSLQIKDVTEASAGTYTLVLWNSAAG 56 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECc--ccCCcCEEEECCCCHHHCEEEEEEEEECCcc
Confidence 57999999999554 5554443322 2234568999999999999999999999883
No 159
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.76 E-value=9.8e-08 Score=66.76 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=55.1
Q ss_pred cCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEe------c--------CCCCCeEEEEe--CCEEEEEEcCCCCCCCE
Q psy14060 139 KIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFP------I--------TSSPDFQIHTF--STKSILIMRQVFMEDSG 202 (283)
Q Consensus 139 ~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~------~--------~~~~~~~~~~~--~~~~~l~i~~~~~~d~G 202 (283)
.+..+.+..|+++.|.|.+.+.+...+.|||.... + ....++.+... .....|.|.++..+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG 83 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA 83 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence 45567899999999999998777789999985321 0 01234444332 35678999999999999
Q ss_pred EEEEEEEeCC
Q psy14060 203 VFAVIAENRG 212 (283)
Q Consensus 203 ~Y~C~a~n~~ 212 (283)
.|.|.+.+..
T Consensus 84 ~Y~C~~~~~~ 93 (109)
T cd04983 84 VYFCALSESG 93 (109)
T ss_pred EEEEEEecCC
Confidence 9999998654
No 160
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.76 E-value=2e-08 Score=65.25 Aligned_cols=58 Identities=9% Similarity=0.119 Sum_probs=41.2
Q ss_pred cCcEEEEEEEccCccce-EEeecCCCE-------EEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 63 AKSQQVQKEKKGDKEIV-RKITATETT-------EMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 63 g~~v~l~C~~~g~~~i~-~~~~~~~~~-------~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
|+.++|.|.+.|.|... .|...+..+ .....+ ..|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~--~~l~i~~v~~~D~G~Y~C~A~N~~G~ 66 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDG--DTIIFSKVQERSSAVYQCNASNEYGY 66 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecC--CEEEECCCCHhhCEEEEEEEEcCCCE
Confidence 57899999999999433 333222111 111222 36889999999999999999999984
No 161
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.75 E-value=1.7e-08 Score=65.71 Aligned_cols=58 Identities=9% Similarity=0.043 Sum_probs=40.7
Q ss_pred cCcEEEEEEEccCccce-EEeec------CCC-EEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 63 AKSQQVQKEKKGDKEIV-RKITA------TET-TEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 63 g~~v~l~C~~~g~~~i~-~~~~~------~~~-~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
|++++|.|.+.|.|... .|... ... ..... ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 66 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV--SSGALILTDVQPSDTAVYQCEARNRHGN 66 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe--eCCEEEECCCChhhCEEEEEEEECCCCe
Confidence 67899999999998432 22221 111 01111 2347999999999999999999999884
No 162
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.75 E-value=9e-08 Score=65.01 Aligned_cols=64 Identities=8% Similarity=0.046 Sum_probs=45.6
Q ss_pred eeeecCcEEEEEEEccCccce-EEee--------------cCCCEEEEEc-CCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 59 EIHTAKSQQVQKEKKGDKEIV-RKIT--------------ATETTEMEHK-GKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~~i~-~~~~--------------~~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
.+.+|+++.|.|.+.+.|... .|.. ...++.+... ....+|.|.+++.+|+|.|.|.+.+....
T Consensus 8 ~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~ 87 (95)
T cd07701 8 TVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPVK 87 (95)
T ss_pred EEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecCc
Confidence 477888999999999887322 3321 1235544322 35678999999999999999988875433
No 163
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.74 E-value=4.6e-08 Score=64.11 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=43.9
Q ss_pred eeecCcEEEEEEEccCc-cce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 60 IHTAKSQQVQKEKKGDK-EIV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 60 v~~g~~v~l~C~~~g~~-~i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
+.+|+.+.|.|.+.|.+ .+. ..+....++.+. + ..|.|.+++.+|+|.|+|.+.|..+.
T Consensus 6 ~~~G~~v~l~C~~~~~~~~v~W~k~g~~l~~~~~~~~~--~--~~L~I~~~~~~DsG~Y~C~a~n~~g~ 70 (79)
T cd04973 6 AHPGDLLQLRCRLRDDVQSINWTKDGVQLGENNRTRIT--G--EEVQIKDAVPRDSGLYACVTSSPSGS 70 (79)
T ss_pred ecCCCCEEEEEEecCCCceEEEeeCCcCCCCCceEEEe--C--CEEEECCCChhhCEEEEEEEeCCCCc
Confidence 66788999999999976 333 233333344443 2 36999999999999999999998764
No 164
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.74 E-value=2e-08 Score=63.94 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=40.8
Q ss_pred EEEEEEEccCccce-EE------eecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 66 QQVQKEKKGDKEIV-RK------ITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 66 v~l~C~~~g~~~i~-~~------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
|+|.|.+.|.|... .| +....++.+. ....|.|.++..+|+|.|+|.|.|..|..
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 62 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHIS---PEGYLAIRDVGVADQGRYECVARNTIGYA 62 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEEC---CCCEEEECcCChhhCEEEEEEEECCCCcE
Confidence 57999999998433 33 2333444443 23479999999999999999999998853
No 165
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.73 E-value=3e-08 Score=66.49 Aligned_cols=62 Identities=8% Similarity=0.026 Sum_probs=44.4
Q ss_pred eeeecCcEEEEEEEccCccce-EEeecCCCE----EEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 59 EIHTAKSQQVQKEKKGDKEIV-RKITATETT----EMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~----~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
.+.+|+.++|.|.+.|.|... .|....... ... .....|.|.+++.+|+|.|+|.+.|..|.
T Consensus 12 ~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~ 78 (88)
T cd04968 12 YALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS--MSGAVLKIPNIQFEDEGTYECEAENIKGK 78 (88)
T ss_pred EEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE--EeCCEEEECCCCcccCEEEEEEEEECCCc
Confidence 366788999999999998332 333221110 111 13468999999999999999999999884
No 166
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.72 E-value=4.7e-08 Score=65.81 Aligned_cols=60 Identities=7% Similarity=0.077 Sum_probs=42.1
Q ss_pred cCcEEEEEEEccCccce-EEeecC----------CC--EEEEEc-------CCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 63 AKSQQVQKEKKGDKEIV-RKITAT----------ET--TEMEHK-------GKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 63 g~~v~l~C~~~g~~~i~-~~~~~~----------~~--~~~~~~-------~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
|++++|.|.+.|.|... .|+... .. ..+... .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 56899999999999443 444311 11 111111 12357999999999999999999999884
No 167
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.72 E-value=4.5e-08 Score=66.66 Aligned_cols=61 Identities=11% Similarity=0.019 Sum_probs=44.9
Q ss_pred eeecCcEEEEEEEccCccce-EEeec------C-CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 60 IHTAKSQQVQKEKKGDKEIV-RKITA------T-ETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 60 v~~g~~v~l~C~~~g~~~i~-~~~~~------~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
+..|+.+.|.|.+.|.|... .|... . .++... .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 15 ~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 83 (95)
T cd05730 15 ANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFN--EDGSEMTILDVDKLDEAEYTCIAENKAGE 83 (95)
T ss_pred EeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEe--CCCCEEEECCCChhhCEEEEEEEEcCCCe
Confidence 66788999999999988433 33322 2 233322 23347999999999999999999999984
No 168
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.71 E-value=3.7e-08 Score=63.63 Aligned_cols=74 Identities=23% Similarity=0.404 Sum_probs=49.4
Q ss_pred CCeEEecCCceeecCCCcEEEEEEEeeec-CCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDP-LPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 210 (283)
Q Consensus 133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p-~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 210 (283)
+|.+...........+. +.|.|.+.+.+ .+.++|+ +...... ............|.|.++..+|.|.|+|.|.|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~--~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFN--SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEE--EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCcee--eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 35666655555544444 99999999887 7889999 1111100 01112222345799999999999999999986
No 169
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.71 E-value=7.1e-08 Score=66.26 Aligned_cols=65 Identities=11% Similarity=0.060 Sum_probs=45.9
Q ss_pred eeeecCcEEEEEEEccCccce-E------EeecCCCEEEEEc------CCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 59 EIHTAKSQQVQKEKKGDKEIV-R------KITATETTEMEHK------GKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~~i~-~------~~~~~~~~~~~~~------~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
.+..|+.+.|.|.+.|.|.+. . ++..+.+...... .....|.|.+++.+|+|.|+|.|.|..+..
T Consensus 14 ~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 14 FANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred EEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 366678899999999999543 3 3332222211111 123689999999999999999999998853
No 170
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.71 E-value=7.5e-08 Score=63.87 Aligned_cols=59 Identities=8% Similarity=0.088 Sum_probs=40.8
Q ss_pred cCcEEEEEEEccCccce-EEeecCC----------CEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 63 AKSQQVQKEKKGDKEIV-RKITATE----------TTEMEHKGKIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 63 g~~v~l~C~~~g~~~i~-~~~~~~~----------~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
|+.++|.|.+.|.|.+. .|..... +..+........|.|.+++.+|+|.|.|.+.|...
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~ 70 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQ 70 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECcc
Confidence 67899999999987443 3332111 11111122357899999999999999999998754
No 171
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.70 E-value=6.6e-08 Score=62.52 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=41.4
Q ss_pred cCcEEEEEEEccCccce-EEee-------cCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 63 AKSQQVQKEKKGDKEIV-RKIT-------ATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 63 g~~v~l~C~~~g~~~i~-~~~~-------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
|+.+.|.|.+.|.|... .|+. ...++... ....|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~C~a~N~~G~ 65 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVY---DNGTLDILITTVKDTGSFTCIASNAAGE 65 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEe---cCCEEEEEECChhhCEEEEEEEECCCCe
Confidence 57899999999988433 3332 12222222 2346899999999999999999999884
No 172
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.70 E-value=1.3e-07 Score=66.26 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=53.2
Q ss_pred ecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCE--ecC----------------CCCCeEEEEeC-CEEEEEEcCCCC
Q psy14060 138 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDF--PIT----------------SSPDFQIHTFS-TKSILIMRQVFM 198 (283)
Q Consensus 138 ~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~--~~~----------------~~~~~~~~~~~-~~~~l~i~~~~~ 198 (283)
..+..+.+.+|++++|.|.+.+ +.+.+.|||... .+. ...++...... ....|.|.++..
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~ 81 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP 81 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence 3456678999999999999988 778899998642 110 01233333222 456899999999
Q ss_pred CCCEEEEEEEEeC
Q psy14060 199 EDSGVFAVIAENR 211 (283)
Q Consensus 199 ~d~G~Y~C~a~n~ 211 (283)
+|+|.|+|.+.+.
T Consensus 82 ~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 82 EDSAVYLCASSLG 94 (110)
T ss_pred hhCEEEEEEeeCC
Confidence 9999999998764
No 173
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.69 E-value=5.2e-08 Score=65.60 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=41.4
Q ss_pred cCcEEEEEEEccCccce-EEeecC--------------CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 63 AKSQQVQKEKKGDKEIV-RKITAT--------------ETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 63 g~~v~l~C~~~g~~~i~-~~~~~~--------------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
|+.++|.|.+.|.|... .|...+ .++.+. ....|.|.+++.+|+|.|+|.+.|..|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 72 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS---QTGDLTITNVQRSDVGYYICQTLNVAGS 72 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEEC---CCCeEEEeeCChhhCEEEEEEEEcCCCc
Confidence 57899999999988432 232221 233332 2346999999999999999999999884
No 174
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.68 E-value=2.6e-07 Score=63.29 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=46.5
Q ss_pred eeeecCcEEEEEEEccCcc---ce-----EEeec--CCCEEEEEc----CCEEEEEEccCCCCC-CeEEEEEEEecceee
Q psy14060 59 EIHTAKSQQVQKEKKGDKE---IV-----RKITA--TETTEMEHK----GKIQERVVDASELDD-DGYYAITERKYYALS 123 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~~---i~-----~~~~~--~~~~~~~~~----~~~~~L~i~~~~~~D-~G~Y~C~a~n~~~~~ 123 (283)
.+..|+.+.|.|.+.|.|. +. +.+.. ..++.+... +....|.|.++..+| .|.|.|.|.|..|..
T Consensus 12 ~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~ 91 (98)
T cd05758 12 YAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSG 91 (98)
T ss_pred EEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcc
Confidence 3567889999999999873 22 22322 245555432 234689999999955 899999999999853
No 175
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.68 E-value=2.1e-07 Score=64.68 Aligned_cols=75 Identities=13% Similarity=0.156 Sum_probs=53.7
Q ss_pred EecCCceeecCCCcEEEEEEEeeec-CCEEEEEeCCE--e---cC---------CCCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060 137 TKKIQPCRAFEQDQARFEVEFDGDP-LPTIKWFREDF--P---IT---------SSPDFQIHTFSTKSILIMRQVFMEDS 201 (283)
Q Consensus 137 ~~~~~~~~~~~g~~v~l~C~~~g~p-~~~~~W~k~~~--~---~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~ 201 (283)
...+..+.+.+|++++|.|.+.+.. ...+.|||... . +. ...++..........|.|.++..+|+
T Consensus 4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds 83 (106)
T cd04980 4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA 83 (106)
T ss_pred EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence 3455667889999999999997654 56799998531 1 10 01234443444556899999999999
Q ss_pred EEEEEEEEeC
Q psy14060 202 GVFAVIAENR 211 (283)
Q Consensus 202 G~Y~C~a~n~ 211 (283)
|.|.|.+.+.
T Consensus 84 g~Y~Ca~~~~ 93 (106)
T cd04980 84 AVYYCQQYGT 93 (106)
T ss_pred EEEEEEEeCC
Confidence 9999998653
No 176
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.68 E-value=1.1e-07 Score=62.51 Aligned_cols=61 Identities=18% Similarity=0.160 Sum_probs=41.8
Q ss_pred cCcEEEEEEEccCccce-EEeec---CCCEEEEE--------cCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 63 AKSQQVQKEKKGDKEIV-RKITA---TETTEMEH--------KGKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 63 g~~v~l~C~~~g~~~i~-~~~~~---~~~~~~~~--------~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
|+.++|.|.+.|.|... .|... .....+.. ......|.|.+++.+|+|.|+|.+.|..|..
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 73 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLL 73 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceE
Confidence 67899999999998432 33321 11111110 1123679999999999999999999998853
No 177
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.67 E-value=1.2e-07 Score=62.56 Aligned_cols=63 Identities=11% Similarity=0.041 Sum_probs=44.4
Q ss_pred eeecCcEEEEEEEccCccce-EEeecCCCEE----EEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 60 IHTAKSQQVQKEKKGDKEIV-RKITATETTE----MEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 60 v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~~----~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
...|+.+.|.|.+.|.|... .|........ .........|.|.+++.+|+|.|+|.+.|..|.
T Consensus 6 ~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~ 73 (82)
T cd05856 6 RPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGE 73 (82)
T ss_pred ccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCcc
Confidence 44578999999999987332 3333222211 112224578999999999999999999999884
No 178
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.66 E-value=6.3e-08 Score=62.94 Aligned_cols=59 Identities=7% Similarity=0.032 Sum_probs=41.5
Q ss_pred cCcEEEEEEEccCccce-EEeec------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 63 AKSQQVQKEKKGDKEIV-RKITA------TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 63 g~~v~l~C~~~g~~~i~-~~~~~------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
|+.++|.|.+.|.|... .|... .... .........|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~ 66 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGY 66 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCe
Confidence 67899999999998432 33221 1111 111223467999999999999999999999884
No 179
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.66 E-value=5.1e-08 Score=62.11 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=40.0
Q ss_pred EEEEEEEccCccce-EEeec-----CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 66 QQVQKEKKGDKEIV-RKITA-----TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 66 v~l~C~~~g~~~i~-~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
++|.|.+.|.|... .|... ..++.+. ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 60 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGK 60 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCc
Confidence 57999999998433 33332 2334443 2347999999999999999999999884
No 180
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.66 E-value=7.6e-08 Score=63.91 Aligned_cols=60 Identities=8% Similarity=0.015 Sum_probs=41.1
Q ss_pred cCcEEEEEEEccC--ccce-EEeecCCC-----------EEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 63 AKSQQVQKEKKGD--KEIV-RKITATET-----------TEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 63 g~~v~l~C~~~g~--~~i~-~~~~~~~~-----------~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
|+.++|.|.+.|. |.+. .|...... ...........|.|.+++.+|+|.|.|.+.|..+.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~ 74 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMD 74 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCc
Confidence 6789999999999 5332 33211110 00111123578999999999999999999998773
No 181
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.64 E-value=7.2e-08 Score=61.75 Aligned_cols=58 Identities=12% Similarity=-0.011 Sum_probs=40.2
Q ss_pred EEEEEEEccCccce-EEeecCCCEE---EEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 66 QQVQKEKKGDKEIV-RKITATETTE---MEHKGKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 66 v~l~C~~~g~~~i~-~~~~~~~~~~---~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
+.|.|.+.|.|... .|...+.... .........|.|.+++.+|+|.|+|.|.|..|..
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 62 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSA 62 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeE
Confidence 47999999999433 4433221110 1111234689999999999999999999999853
No 182
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.64 E-value=1.7e-07 Score=63.18 Aligned_cols=74 Identities=8% Similarity=0.025 Sum_probs=54.0
Q ss_pred CCeEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR 211 (283)
Q Consensus 133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 211 (283)
+|.+...+ ...+..|++|+|.|... .+...+.|+|+|....... .........+.|.+++.+|+|.|+|.+.+.
T Consensus 2 kP~L~a~p-~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~---~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 2 KPSLWAEP-SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK---PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCEEEecC-CCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc---cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 34444444 35788999999999875 4778899999987543211 111234557999999999999999999876
No 183
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.63 E-value=6.1e-08 Score=63.17 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=41.6
Q ss_pred eeeecCcEEEEEEEccCccc--eEEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060 59 EIHTAKSQQVQKEKKGDKEI--VRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKY 119 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~~i--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 119 (283)
.+.+|+.|+|.|.+.+.|.. ..|...+... .. ....|.|.++ .+|+|.|+|.+.|.
T Consensus 11 ~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l--~~--~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 11 TIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLL--ET--TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred EeeCCCCEEEEEeCCCCCCCccEEEEECCEEe--ec--cCCeEEEeec-ccCCEEeEEECCCC
Confidence 48889999999999997742 2555444322 12 3457889999 99999999999875
No 184
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.63 E-value=1.6e-07 Score=62.53 Aligned_cols=62 Identities=10% Similarity=0.135 Sum_probs=44.1
Q ss_pred eeeecCcEEEEEEE-ccCccce-EEee------c-CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 59 EIHTAKSQQVQKEK-KGDKEIV-RKIT------A-TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 59 ~v~~g~~v~l~C~~-~g~~~i~-~~~~------~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
.+.+|+.+.|.|.+ .|.|... .|.. . ..++.... ...|.|.+++.+|+|.|+|.+.|..|..
T Consensus 7 ~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 77 (86)
T cd05724 7 QVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGER 77 (86)
T ss_pred EEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCce
Confidence 36678899999998 6777332 2222 2 22333322 3479999999999999999999998743
No 185
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.62 E-value=5.6e-07 Score=61.08 Aligned_cols=65 Identities=11% Similarity=0.081 Sum_probs=48.7
Q ss_pred eeeecCcEEEEEEEccCccc---e-----EEeec--CCCEEEEEc----CCEEEEEEccCCCCC-CeEEEEEEEecceee
Q psy14060 59 EIHTAKSQQVQKEKKGDKEI---V-----RKITA--TETTEMEHK----GKIQERVVDASELDD-DGYYAITERKYYALS 123 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~~i---~-----~~~~~--~~~~~~~~~----~~~~~L~i~~~~~~D-~G~Y~C~a~n~~~~~ 123 (283)
.+.+|+.++|.|.+.+.|.. . ..+.. ..++.+... +....|.|.++..+| .|.|.|.|.|.+|..
T Consensus 12 ~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d 91 (98)
T cd05898 12 YAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSG 91 (98)
T ss_pred EEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccc
Confidence 46788899999999877732 2 12212 356776543 478899999998877 799999999999854
No 186
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.61 E-value=1.5e-07 Score=62.19 Aligned_cols=61 Identities=7% Similarity=-0.046 Sum_probs=43.1
Q ss_pred eeeecCcEEEEEEEcc-Cccce-EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 59 EIHTAKSQQVQKEKKG-DKEIV-RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g-~~~i~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
.|.+|+.++|.|.+.+ .+... .+...+.. +........|.|.+++.+|+|.|+|.+.+..+
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~--~~~~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~ 72 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKA--KKYSHSNSNLSIPQATLSDSGSYHCSGIIGSY 72 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeE--ccccCCCceEEECccCHHHCEEEEEEEEeCCc
Confidence 4778899999999864 33322 33333322 11222356899999999999999999999876
No 187
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.61 E-value=3.5e-07 Score=62.25 Aligned_cols=63 Identities=8% Similarity=0.105 Sum_probs=43.8
Q ss_pred eeeecCcEEEEEEEccCccce-EEee--------------cCCCEEEEE-cCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 59 EIHTAKSQQVQKEKKGDKEIV-RKIT--------------ATETTEMEH-KGKIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~~i~-~~~~--------------~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
.+.+|++++|.|.+.+.+... .|.. ...++.+.. .+....|.|.+++.+|+|.|.|.+.+...
T Consensus 8 ~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~ 86 (95)
T cd05717 8 TVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPV 86 (95)
T ss_pred EEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC
Confidence 467889999999998876222 2321 123444421 23457899999999999999999886643
No 188
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.60 E-value=3.7e-07 Score=64.61 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=52.8
Q ss_pred CCceeecCCCcEEEEEEEee--ecCCEEEEEeCC--Eec------C-----------CCCCeEEEEeC--CEEEEEEcCC
Q psy14060 140 IQPCRAFEQDQARFEVEFDG--DPLPTIKWFRED--FPI------T-----------SSPDFQIHTFS--TKSILIMRQV 196 (283)
Q Consensus 140 ~~~~~~~~g~~v~l~C~~~g--~p~~~~~W~k~~--~~~------~-----------~~~~~~~~~~~--~~~~l~i~~~ 196 (283)
+..+.+..|++++|.|.+.+ .+.+.+.|||.. ... . ...++.+.... ....|.|.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 45567889999999999977 577889999852 110 0 12345554444 5678999999
Q ss_pred CCCCCEEEEEEEEe
Q psy14060 197 FMEDSGVFAVIAEN 210 (283)
Q Consensus 197 ~~~d~G~Y~C~a~n 210 (283)
..+|+|.|+|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 99999999999864
No 189
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.60 E-value=1.3e-07 Score=61.53 Aligned_cols=55 Identities=11% Similarity=0.139 Sum_probs=38.9
Q ss_pred EEEEEEEccCccce-EEee------cC-CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 66 QQVQKEKKGDKEIV-RKIT------AT-ETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 66 v~l~C~~~g~~~i~-~~~~------~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
|+|.|.+.|.|... .|.. .. .++.+.. ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 63 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSS--KERTLTLRSAGPDDSGLYYCCAHNAFGS 63 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeC--CCCEEEEeeCCcccCEEEEEEEEeCCCe
Confidence 57999999998322 2222 22 1223322 2357999999999999999999999884
No 190
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.60 E-value=2.7e-07 Score=59.75 Aligned_cols=58 Identities=14% Similarity=0.180 Sum_probs=40.8
Q ss_pred EEEEEEEcc-Cccce-EEeec------CCC---EEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 66 QQVQKEKKG-DKEIV-RKITA------TET---TEMEHKGKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 66 v~l~C~~~g-~~~i~-~~~~~------~~~---~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
+.|.|.+.| .|.+. .|... ..+ +.+........|.|.+++.+|+|.|+|.|.|..|..
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 69 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND 69 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCce
Confidence 469999999 77443 33322 221 113333346789999999999999999999998853
No 191
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.59 E-value=1.1e-07 Score=62.39 Aligned_cols=39 Identities=5% Similarity=0.070 Sum_probs=34.8
Q ss_pred ecCCceEEcCCCeEEEEEEEEeeCCC-eeEEeeCCEEecC
Q psy14060 241 TTISSAVINVGQLARFDAKISATKPL-DVYWLKVSSLSDV 279 (283)
Q Consensus 241 ~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~g~~l~~ 279 (283)
..|.+..+.+|+.+.|.|.+.|.|.| +|.|++||+++..
T Consensus 3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~ 42 (81)
T cd05749 3 VEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD 42 (81)
T ss_pred CCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC
Confidence 45567889999999999999999999 7999999999864
No 192
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.59 E-value=2.2e-07 Score=60.20 Aligned_cols=55 Identities=9% Similarity=0.070 Sum_probs=38.8
Q ss_pred EEEEEEEccCccce-EEeecC---------CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 66 QQVQKEKKGDKEIV-RKITAT---------ETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 66 v~l~C~~~g~~~i~-~~~~~~---------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
++|.|.+.|.|... .|...+ .++.+.. ....|.|.+++.+|+|.|.|.|.|..|.
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~A~N~~G~ 65 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMP--EDDVFFIVDVKIEDTGVYSCTAQNTAGS 65 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEec--CCCEEEEeeCCcccCEEEEEEEEcCCCE
Confidence 47999999999433 333222 1233322 2347899999999999999999999874
No 193
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.59 E-value=9.6e-08 Score=61.72 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=39.2
Q ss_pred EEEEEEEccCccce-EE------ee--cCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 66 QQVQKEKKGDKEIV-RK------IT--ATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 66 v~l~C~~~g~~~i~-~~------~~--~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
++|.|.+.|.|... .| +. ...++... ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~---~~g~L~i~~~~~~D~G~Y~C~a~N~~G~ 63 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL---RSGALQIENSEESDQGKYECVATNSAGT 63 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc---CCcEEEECCCChhhCEEEEEEEECCCCc
Confidence 47999999999432 22 22 22344433 2346999999999999999999999885
No 194
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.59 E-value=1.2e-06 Score=60.97 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=54.5
Q ss_pred CCCcEEEEEEEeeec------CCEEEEEeCC-----E-ec--CCC--------CCeEEEE---eCCEEEEEEcCCCCCCC
Q psy14060 147 EQDQARFEVEFDGDP------LPTIKWFRED-----F-PI--TSS--------PDFQIHT---FSTKSILIMRQVFMEDS 201 (283)
Q Consensus 147 ~g~~v~l~C~~~g~p------~~~~~W~k~~-----~-~~--~~~--------~~~~~~~---~~~~~~l~i~~~~~~d~ 201 (283)
.|+.++|.|.....+ ...+.|+|.. . .+ ... .+.++.. .....+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 488999999987643 4689999862 1 01 011 1111111 22456899999999999
Q ss_pred EEEEEEEEeCCceeEEEEEEEEEe
Q psy14060 202 GVFAVIAENRGGKAKCSANLVVEE 225 (283)
Q Consensus 202 G~Y~C~a~n~~g~~~~~~~l~v~~ 225 (283)
|.|.|.+.+..+.......|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999998877777777777764
No 195
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.58 E-value=7.4e-08 Score=61.67 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=38.8
Q ss_pred EEEEEEEccCccce-EEe------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 66 QQVQKEKKGDKEIV-RKI------TATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 66 v~l~C~~~g~~~i~-~~~------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
++|.|.+.|.|... .|. ....++. . ....|.|.+++.+|+|.|+|.+.|..+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~--~--~~~~L~I~~v~~~D~G~YtC~a~N~~g~ 60 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK--K--SGHSLTIKDVTEEDAGNYTVVLTNKQAK 60 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEE--c--CCCEEEECcCCHHHCEEEEEEEEcCCcc
Confidence 57999999999443 333 2222222 1 3467999999999999999999998873
No 196
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.58 E-value=1.4e-07 Score=61.51 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=37.9
Q ss_pred EEEEEEEccCccce-EEeec--------CCCEEEEEcCCEEEEEEccCCC----CCCeEEEEEEEecceeee
Q psy14060 66 QQVQKEKKGDKEIV-RKITA--------TETTEMEHKGKIQERVVDASEL----DDDGYYAITERKYYALSD 124 (283)
Q Consensus 66 v~l~C~~~g~~~i~-~~~~~--------~~~~~~~~~~~~~~L~i~~~~~----~D~G~Y~C~a~n~~~~~~ 124 (283)
++|.|.+.|.|.+. .|... ..++.+. .....|.|.++.. +|+|.|+|.|.|..|...
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~--~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMK--PDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI 70 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEe--CCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence 57999999998433 33321 1223322 2345777887753 799999999999998543
No 197
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.58 E-value=8.3e-07 Score=61.95 Aligned_cols=79 Identities=13% Similarity=0.139 Sum_probs=53.6
Q ss_pred CCCcEEEEEEEeeec------------CCEEEEEeCCE-----ec---------CCC--CCeEEEE---eCCEEEEEEcC
Q psy14060 147 EQDQARFEVEFDGDP------------LPTIKWFREDF-----PI---------TSS--PDFQIHT---FSTKSILIMRQ 195 (283)
Q Consensus 147 ~g~~v~l~C~~~g~p------------~~~~~W~k~~~-----~~---------~~~--~~~~~~~---~~~~~~l~i~~ 195 (283)
.|++++|.|...... .+.+.|+|... .+ ... .++.+.. .....+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 488999999986432 36899998521 11 011 1333322 22457899999
Q ss_pred CCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060 196 VFMEDSGVFAVIAENRGGKAKCSANLVVEE 225 (283)
Q Consensus 196 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 225 (283)
++.+|+|.|+|.+.+..........|.|..
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999997766666666666653
No 198
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.57 E-value=4.9e-07 Score=62.70 Aligned_cols=70 Identities=20% Similarity=0.281 Sum_probs=51.0
Q ss_pred eecCCCcEEEEEEEeee-cCCEEEEEeCCEe-----c------------CCCCCeEEEEeC--CEEEEEEcCCCCCCCEE
Q psy14060 144 RAFEQDQARFEVEFDGD-PLPTIKWFREDFP-----I------------TSSPDFQIHTFS--TKSILIMRQVFMEDSGV 203 (283)
Q Consensus 144 ~~~~g~~v~l~C~~~g~-p~~~~~W~k~~~~-----~------------~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~ 203 (283)
.+..|++++|.|.+... +...+.|+|.... + ....++.+.... ...+|.|.++..+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46789999999999875 5678999985321 1 011233333333 46689999999999999
Q ss_pred EEEEEEeCCc
Q psy14060 204 FAVIAENRGG 213 (283)
Q Consensus 204 Y~C~a~n~~g 213 (283)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987654
No 199
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.57 E-value=1.4e-07 Score=64.70 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=40.3
Q ss_pred CCeEEecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecC
Q psy14060 236 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDV 279 (283)
Q Consensus 236 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~ 279 (283)
||.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|+.+..
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~ 44 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLET 44 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECcc
Confidence 47788888889999999999999999999999999999998875
No 200
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.56 E-value=2.4e-07 Score=61.68 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=40.3
Q ss_pred cCcEEEEEEEccCcc--ce-EEeecCCCE------------EEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 63 AKSQQVQKEKKGDKE--IV-RKITATETT------------EMEHKGKIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 63 g~~v~l~C~~~g~~~--i~-~~~~~~~~~------------~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
|+.+.|.|.+.+++. +. .|....... ..........|.|.+++.+|+|.|+|.|.|..+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~ 74 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQM 74 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecce
Confidence 678999999988762 22 332222110 000112367899999999999999999999876
No 201
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.55 E-value=2.4e-07 Score=60.66 Aligned_cols=55 Identities=9% Similarity=0.051 Sum_probs=39.2
Q ss_pred EEEEEEEccCccce-EEeec--------------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 66 QQVQKEKKGDKEIV-RKITA--------------TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 66 v~l~C~~~g~~~i~-~~~~~--------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
|+|.|.+.|.|... .|... ..++.+. ...+|.|.++..+|+|.|.|.|.|..|..
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 70 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL---SNGSLLIKHVLEEDSGYYLCKVSNDVGAD 70 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe---cCCeEEECcCCcccCEEEEEEEEeCCCCC
Confidence 57999999998433 23221 1223322 23579999999999999999999998843
No 202
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.55 E-value=4.1e-07 Score=57.81 Aligned_cols=58 Identities=9% Similarity=-0.038 Sum_probs=38.3
Q ss_pred cCcEEEEEEEccCccce-EEeecCCCEEE--EEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 63 AKSQQVQKEKKGDKEIV-RKITATETTEM--EHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 63 g~~v~l~C~~~g~~~i~-~~~~~~~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
|+.++|.|.+.|.|... +|...+..... ........|.|.++ .|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~ 61 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNI--YESANYTCVAISSLGM 61 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEecc--ccCeeEEEEEEeCCCE
Confidence 56899999999999444 44332211100 00112346888886 4899999999999885
No 203
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.55 E-value=1.3e-07 Score=60.52 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=39.3
Q ss_pred EEEEEEEccCccce-EEeecC-----CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 66 QQVQKEKKGDKEIV-RKITAT-----ETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 66 v~l~C~~~g~~~i~-~~~~~~-----~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
++|.|.+.|.|... .|.... .+... ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~ 61 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKF--ENFNKTLKIDNVSEEDDGEYRCTASNSLGS 61 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeE--ecCCCEEEECCCCHHHCEEEEEEEEeCCce
Confidence 57999999998433 333222 12222 123457999999999999999999999884
No 204
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.54 E-value=2.2e-07 Score=62.90 Aligned_cols=61 Identities=10% Similarity=0.043 Sum_probs=42.6
Q ss_pred eeecCcEEEEEEEcc-----Cccce-EEeecCC--------CEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 60 IHTAKSQQVQKEKKG-----DKEIV-RKITATE--------TTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 60 v~~g~~v~l~C~~~g-----~~~i~-~~~~~~~--------~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
+.+|+.+.|.|.+.| .|..+ .|...+. ..++... ...|.|.++..+|+|.|+|.+.|..+.
T Consensus 11 v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~--~~~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 11 VLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ--KDLLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec--CCeEEEccCCcccCeEEEEEEcCCCcc
Confidence 667889999999999 45222 2222211 1222221 357999999999999999999998874
No 205
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.54 E-value=8.4e-07 Score=59.84 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=46.2
Q ss_pred eeeecCcEEEEEEEccCc--cce-------------EEeecCCCEEEEE-cCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 59 EIHTAKSQQVQKEKKGDK--EIV-------------RKITATETTEMEH-KGKIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~--~i~-------------~~~~~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
.+.+|++++|.|.+.+.. .+. .......|+.... .+...+|.|.+++.+|+|.|.|.+.....
T Consensus 8 tv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p~ 86 (95)
T cd05881 8 TVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTDPP 86 (95)
T ss_pred EEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcccC
Confidence 466788999999999863 111 1112455676665 46788999999999999999998876543
No 206
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.54 E-value=1.5e-07 Score=59.87 Aligned_cols=54 Identities=7% Similarity=0.025 Sum_probs=38.4
Q ss_pred EEEEEEEccCccce-EEeecCC----CEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 66 QQVQKEKKGDKEIV-RKITATE----TTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 66 v~l~C~~~g~~~i~-~~~~~~~----~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
++|.|.+.|.|... .|...+. ...+. ....|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~ 59 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFK---RGVHLTIYEVTEKDAGNYTVVLTNPITK 59 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEc---cCCEEEECcCCHHHCEEEEEEEEECCCc
Confidence 47899999999443 3332211 11211 2347999999999999999999999873
No 207
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.52 E-value=3.9e-07 Score=61.41 Aligned_cols=72 Identities=13% Similarity=0.058 Sum_probs=48.6
Q ss_pred CCCceeeecCCeeeecCcEEEEEEEccCccceEEeecCCC--E-EEEEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060 48 PEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATET--T-EMEHKGKIQERVVDASELDDDGYYAITERKY 119 (283)
Q Consensus 48 ~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~~~~~--~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 119 (283)
++|.+...++..|..|+.|+|.|..............+.. . .....+....|.|.+++.+|+|.|+|...+.
T Consensus 1 pkP~L~a~p~~vV~~G~~VtL~C~~~~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 1 PKPSLWAEPSSVVPLGKPVTLRCQGPYGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCCEEEecCCCccCCCCcEEEEEecCCCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 3567776666668899999999988643332222222111 1 1112345678999999999999999998875
No 208
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.52 E-value=1.7e-06 Score=59.40 Aligned_cols=76 Identities=16% Similarity=0.316 Sum_probs=49.1
Q ss_pred CCcEEEEEEEeeec---CCEEEEEeCCE--ec---------CC----C--CCeEEEE---eCCEEEEEEcCCCCCCCEEE
Q psy14060 148 QDQARFEVEFDGDP---LPTIKWFREDF--PI---------TS----S--PDFQIHT---FSTKSILIMRQVFMEDSGVF 204 (283)
Q Consensus 148 g~~v~l~C~~~g~p---~~~~~W~k~~~--~~---------~~----~--~~~~~~~---~~~~~~l~i~~~~~~d~G~Y 204 (283)
|+++.|.|...+.. ...+.|+|... .+ .. . .++.+.. .....+|.|.++..+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 67899999986322 23578887541 11 00 0 1222211 12346899999999999999
Q ss_pred EEEEEeCCceeEEEEEEEE
Q psy14060 205 AVIAENRGGKAKCSANLVV 223 (283)
Q Consensus 205 ~C~a~n~~g~~~~~~~l~v 223 (283)
+|.+.+..+.......|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999987776665565554
No 209
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.52 E-value=2.3e-07 Score=61.75 Aligned_cols=64 Identities=11% Similarity=0.018 Sum_probs=43.1
Q ss_pred eeeecCcEEEEEEEcc-Cccce-EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 59 EIHTAKSQQVQKEKKG-DKEIV-RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g-~~~i~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
.+.+|+.++|.|.+.+ .|... .|.................|.|.+++.+|+|.|.|.+.|..+.
T Consensus 12 ~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~ 77 (85)
T cd05754 12 EVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDT 77 (85)
T ss_pred EEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCCe
Confidence 3667889999999975 44322 3333222111111112457999999999999999999998874
No 210
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.52 E-value=1.8e-06 Score=58.99 Aligned_cols=75 Identities=15% Similarity=0.271 Sum_probs=49.4
Q ss_pred CcEEEEEEEeeec---CCEEEEEeCCEe---------------cCCCCCeEEEEeC---CEEEEEEcCCCCCCCEEEEEE
Q psy14060 149 DQARFEVEFDGDP---LPTIKWFREDFP---------------ITSSPDFQIHTFS---TKSILIMRQVFMEDSGVFAVI 207 (283)
Q Consensus 149 ~~v~l~C~~~g~p---~~~~~W~k~~~~---------------~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~ 207 (283)
+++.|.|.....+ ...+.|+|.... +......++.... ...+|.|.++..+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999987644 346999986431 0111112222222 356899999999999999999
Q ss_pred EEe-CCceeEEEEEEEE
Q psy14060 208 AEN-RGGKAKCSANLVV 223 (283)
Q Consensus 208 a~n-~~g~~~~~~~l~v 223 (283)
+.. ..|.......|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 875 5566666666655
No 211
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.52 E-value=2.8e-07 Score=59.90 Aligned_cols=57 Identities=11% Similarity=0.097 Sum_probs=39.5
Q ss_pred EEEEEEEccCccce-EEe------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 66 QQVQKEKKGDKEIV-RKI------TATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 66 v~l~C~~~g~~~i~-~~~------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
+.|.|.+.|.|.+. .|. ....+..+........|.|.++..+|.|.|+|.+.|..|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~ 64 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGV 64 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCC
Confidence 46899999998433 332 2222222222233457999999999999999999999884
No 212
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.50 E-value=6.9e-07 Score=58.68 Aligned_cols=57 Identities=11% Similarity=0.131 Sum_probs=39.1
Q ss_pred EEEEEEccCccce-------EEeecCCCEEEE--E-----cCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 67 QVQKEKKGDKEIV-------RKITATETTEME--H-----KGKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 67 ~l~C~~~g~~~i~-------~~~~~~~~~~~~--~-----~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
.+.|.+.|.|... ..+......... . ......|.|.+++.+|+|.|+|.|.|..|..
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~ 72 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD 72 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe
Confidence 3689999998433 333333322221 1 1235679999999999999999999999853
No 213
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.50 E-value=3.1e-06 Score=58.83 Aligned_cols=79 Identities=10% Similarity=0.191 Sum_probs=54.2
Q ss_pred CCCcEEEEEEEeeec------CCEEEEEeCCE----e----cCC----------CCCeEEEEe-CCEEEEEEcCCCCCCC
Q psy14060 147 EQDQARFEVEFDGDP------LPTIKWFREDF----P----ITS----------SPDFQIHTF-STKSILIMRQVFMEDS 201 (283)
Q Consensus 147 ~g~~v~l~C~~~g~p------~~~~~W~k~~~----~----~~~----------~~~~~~~~~-~~~~~l~i~~~~~~d~ 201 (283)
.|++++|.|.....| ...+.|+|... . +.. ..++.+... ....+|.|.++..+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 478999999987543 35699998631 0 100 012222111 2245799999999999
Q ss_pred EEEEEEEEeCCceeEEEEEEEEEe
Q psy14060 202 GVFAVIAENRGGKAKCSANLVVEE 225 (283)
Q Consensus 202 G~Y~C~a~n~~g~~~~~~~l~v~~ 225 (283)
|.|.|.+.+..+.......|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999888777777777754
No 214
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.48 E-value=6.7e-07 Score=60.32 Aligned_cols=63 Identities=6% Similarity=0.037 Sum_probs=44.1
Q ss_pred eeecCcEEEEEEEccCccce-EEe------e--------------cCCCEEEEE---cCCEEEEEEccCCCCCCeEEEEE
Q psy14060 60 IHTAKSQQVQKEKKGDKEIV-RKI------T--------------ATETTEMEH---KGKIQERVVDASELDDDGYYAIT 115 (283)
Q Consensus 60 v~~g~~v~l~C~~~g~~~i~-~~~------~--------------~~~~~~~~~---~~~~~~L~i~~~~~~D~G~Y~C~ 115 (283)
+.+|+.|+|.|...+.+... .|. . ...++.... ..+...|+|.+++.+|+|.|+|.
T Consensus 4 ~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~ 83 (94)
T cd07690 4 GKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICE 83 (94)
T ss_pred eeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEEE
Confidence 45788999999998877222 221 0 122233332 34568899999999999999999
Q ss_pred EEeccee
Q psy14060 116 ERKYYAL 122 (283)
Q Consensus 116 a~n~~~~ 122 (283)
+.|..+.
T Consensus 84 v~~~~~~ 90 (94)
T cd07690 84 VEDKKEE 90 (94)
T ss_pred ECCccce
Confidence 9887653
No 215
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.48 E-value=1e-06 Score=60.34 Aligned_cols=67 Identities=7% Similarity=0.067 Sum_probs=48.9
Q ss_pred eecCCCcEEEEEEEeee--cCCEEEEEeCCE--ecC------------CCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEE
Q psy14060 144 RAFEQDQARFEVEFDGD--PLPTIKWFREDF--PIT------------SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVI 207 (283)
Q Consensus 144 ~~~~g~~v~l~C~~~g~--p~~~~~W~k~~~--~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 207 (283)
.+..|++++|.|...+. ....+.||+... ... ...++..........|.|.++..+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46789999999998764 456799998532 110 01245554455667899999999999999999
Q ss_pred EEe
Q psy14060 208 AEN 210 (283)
Q Consensus 208 a~n 210 (283)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 864
No 216
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.47 E-value=2.6e-07 Score=58.99 Aligned_cols=52 Identities=12% Similarity=-0.028 Sum_probs=37.0
Q ss_pred EEEEEEEccCccce-E------EeecC-CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 66 QQVQKEKKGDKEIV-R------KITAT-ETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 66 v~l~C~~~g~~~i~-~------~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
++|.|.+.|.|... . .+... .++. .. ..+|.|.+++.+|+|.|+|.+.|...
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~--~~--~~~L~I~~v~~~D~G~YtC~a~~~~~ 60 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYH--VD--GYSLVIKDVTEEDAGIYTILLGIKQY 60 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEE--eC--CCEEEECcCCHHHCEEEEEEEEcccc
Confidence 47999999999443 2 33222 2222 22 23799999999999999999998744
No 217
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.47 E-value=2e-06 Score=59.25 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=51.8
Q ss_pred cCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEe-----c----CC----------CCCeEEEEeCCEEEEEEcCCCCC
Q psy14060 139 KIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFP-----I----TS----------SPDFQIHTFSTKSILIMRQVFME 199 (283)
Q Consensus 139 ~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~-----~----~~----------~~~~~~~~~~~~~~l~i~~~~~~ 199 (283)
.+.+..+.+|+++.|.|.........+.|||.... + .. ..+..+.. ..+|.|.+++..
T Consensus 4 e~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~---ngSL~I~~v~~~ 80 (105)
T cd05774 4 ELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP---NGSLLIQNVTQK 80 (105)
T ss_pred eccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC---CCcEEEecCCcc
Confidence 34455678999999998765434458999996321 1 00 01112221 236999999999
Q ss_pred CCEEEEEEEEeCCc-eeEEEEEE
Q psy14060 200 DSGVFAVIAENRGG-KAKCSANL 221 (283)
Q Consensus 200 d~G~Y~C~a~n~~g-~~~~~~~l 221 (283)
|+|.|+|.+.+... .......|
T Consensus 81 D~G~Y~~~v~~~~~~~~~~~v~l 103 (105)
T cd05774 81 DTGFYTLQTITTNFQVEQATVHL 103 (105)
T ss_pred cCEEEEEEEEeCCccEEEEEEEE
Confidence 99999999988763 33444443
No 218
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.47 E-value=6.1e-07 Score=60.84 Aligned_cols=44 Identities=14% Similarity=0.251 Sum_probs=35.9
Q ss_pred CeEEecCCceEEc---CCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060 237 PSFLTTISSAVIN---VGQLARFDAKISATKPLDVYWLKVSSLSDVK 280 (283)
Q Consensus 237 p~~~~~~~~~~v~---~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~ 280 (283)
|.|+..+.+..+. +|+.+.|.|.+.|.|.|.|+|++||..+...
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~ 48 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTE 48 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccC
Confidence 5666666665543 4789999999999999999999999998643
No 219
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.47 E-value=7.9e-07 Score=57.82 Aligned_cols=56 Identities=13% Similarity=0.152 Sum_probs=39.3
Q ss_pred EEEEEccCccce-------EEeecCCCEEE--E---EcCCEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 68 VQKEKKGDKEIV-------RKITATETTEM--E---HKGKIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 68 l~C~~~g~~~i~-------~~~~~~~~~~~--~---~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
+.|.+.|+|..+ ..+..+.+... . .......|.|.+++.+|+|.|+|.|.|..|..
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~ 70 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGED 70 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCccc
Confidence 689999999433 34433333211 1 11235689999999999999999999999854
No 220
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.46 E-value=5.4e-07 Score=58.62 Aligned_cols=57 Identities=18% Similarity=0.119 Sum_probs=36.6
Q ss_pred EEEEEEEccCccce-EEeec--------CCCEEEEEcCCEEEEEEccCCC----CCCeEEEEEEEecceeee
Q psy14060 66 QQVQKEKKGDKEIV-RKITA--------TETTEMEHKGKIQERVVDASEL----DDDGYYAITERKYYALSD 124 (283)
Q Consensus 66 v~l~C~~~g~~~i~-~~~~~--------~~~~~~~~~~~~~~L~i~~~~~----~D~G~Y~C~a~n~~~~~~ 124 (283)
+.|.|.+.|.|... .|... ..++.+.. ....|.|..+.. .|+|.|+|.|.|..|...
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~--~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKP--NTGTLVINIMNGEKAEAYEGVYQCTARNERGAAV 70 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeC--CCceEEEeccccCCCCCCCEEEEEEEEcCCCeEE
Confidence 57999999999443 33322 12333332 234566766654 378999999999988543
No 221
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.45 E-value=7.4e-07 Score=57.96 Aligned_cols=57 Identities=19% Similarity=0.170 Sum_probs=37.7
Q ss_pred EEEEEEEccCccce-EEeec--------CCCEEEEEcCCEEEEEEccCC---C-CCCeEEEEEEEecceeee
Q psy14060 66 QQVQKEKKGDKEIV-RKITA--------TETTEMEHKGKIQERVVDASE---L-DDDGYYAITERKYYALSD 124 (283)
Q Consensus 66 v~l~C~~~g~~~i~-~~~~~--------~~~~~~~~~~~~~~L~i~~~~---~-~D~G~Y~C~a~n~~~~~~ 124 (283)
+.|.|.+.|.|..+ .|... ..++.+.. ....|.|.++. + .|+|.|+|.|.|..|...
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRR--RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL 70 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeC--CCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence 47999999999444 33332 23333322 34577787653 2 469999999999998543
No 222
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.43 E-value=4.3e-06 Score=58.81 Aligned_cols=75 Identities=9% Similarity=0.116 Sum_probs=50.5
Q ss_pred CCceeecCCCcEEEEEEEeee----cCCEEEEEe---------------CCEecC-CC----CCeEEEEe--CCEEEEEE
Q psy14060 140 IQPCRAFEQDQARFEVEFDGD----PLPTIKWFR---------------EDFPIT-SS----PDFQIHTF--STKSILIM 193 (283)
Q Consensus 140 ~~~~~~~~g~~v~l~C~~~g~----p~~~~~W~k---------------~~~~~~-~~----~~~~~~~~--~~~~~l~i 193 (283)
+..+.+..|+.+.|.|..... +...+.|.+ ++.... .. .+..+... ....+|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 455778899999999998653 235799932 233221 11 12222211 23458999
Q ss_pred cCCCCCCCEEEEEEEEeCCce
Q psy14060 194 RQVFMEDSGVFAVIAENRGGK 214 (283)
Q Consensus 194 ~~~~~~d~G~Y~C~a~n~~g~ 214 (283)
.+++.+|.|.|+|.+.|..+.
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPDI 105 (116)
T ss_pred ccCCcccCEEEEEEEEcCCCc
Confidence 999999999999999987653
No 223
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.43 E-value=7.4e-07 Score=59.08 Aligned_cols=58 Identities=10% Similarity=0.118 Sum_probs=41.1
Q ss_pred eeeecCcEEEEEEEccCc-cce-----EEeecC-CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060 59 EIHTAKSQQVQKEKKGDK-EIV-----RKITAT-ETTEMEHKGKIQERVVDASELDDDGYYAITERKYY 120 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~-~i~-----~~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~ 120 (283)
.+..|+++.|.|.+.+.. .+. ..+... .++.+. ...|.|.+++.+|+|.|+|.+.+..
T Consensus 7 ~v~~G~~v~L~C~~~~~~~~i~W~~ng~~i~~~~~r~~~~----~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 7 TFKLGNNAELKCSPKSNLARVVWKFDGKVLTPESAKYLLY----RDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred EEECCCCEEEEEECCCCCCeEEEEECCEECCCCCceEEEE----CCcEEEeCCCHHHCEEEEEEEEecc
Confidence 377788999999986543 343 334333 344332 2358999999999999999998874
No 224
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.40 E-value=1.2e-06 Score=59.48 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=36.1
Q ss_pred CeEEecCCceEEcCC---CeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060 237 PSFLTTISSAVINVG---QLARFDAKISATKPLDVYWLKVSSLSDVK 280 (283)
Q Consensus 237 p~~~~~~~~~~v~~g---~~v~L~C~~~g~p~~~v~W~~~g~~l~~~ 280 (283)
|.|...|.+..+.+| +.++|.|.+.|+|.|.|+|++||+.+...
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~ 48 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFA 48 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccC
Confidence 566666777766555 68999999999999999999999998643
No 225
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.39 E-value=1.9e-06 Score=55.87 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=38.7
Q ss_pred EEEEEEEcc-Cccce-EEeecC----------CCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 66 QQVQKEKKG-DKEIV-RKITAT----------ETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 66 v~l~C~~~g-~~~i~-~~~~~~----------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
+.|.|.+.+ .|.+. .|...+ .++.+........|.|.++..+|+|.|+|.+.|..|.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~ 69 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGN 69 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCc
Confidence 468999875 45322 232221 1233333345678999999999999999999999874
No 226
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.39 E-value=2e-06 Score=58.61 Aligned_cols=78 Identities=13% Similarity=0.255 Sum_probs=51.7
Q ss_pred cCCCcEEEEEEEee-ecCCEEEEEeCCEecC--C-----------CCCe--EEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060 146 FEQDQARFEVEFDG-DPLPTIKWFREDFPIT--S-----------SPDF--QIHTFSTKSILIMRQVFMEDSGVFAVIAE 209 (283)
Q Consensus 146 ~~g~~v~l~C~~~g-~p~~~~~W~k~~~~~~--~-----------~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~ 209 (283)
..|++|+|.|.... .....+.|++....+. . ...+ ++.......+|.|.++..+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 36899999998865 4456799998643221 0 0111 22333445789999999999999999998
Q ss_pred eCCcee-EEEEEEEE
Q psy14060 210 NRGGKA-KCSANLVV 223 (283)
Q Consensus 210 n~~g~~-~~~~~l~v 223 (283)
+..|.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 877543 33344443
No 227
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.38 E-value=2e-06 Score=58.29 Aligned_cols=69 Identities=7% Similarity=0.035 Sum_probs=48.5
Q ss_pred CCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060 140 IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE 209 (283)
Q Consensus 140 ~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~ 209 (283)
.....+..|++|+|.|.... +...+.|||++...................+.|..++.+|+|.|.|...
T Consensus 7 ~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 7 HPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred cCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 34567889999999998765 5568999999876332110000011234578999999999999999975
No 228
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.38 E-value=1.3e-06 Score=58.92 Aligned_cols=60 Identities=10% Similarity=0.063 Sum_probs=39.2
Q ss_pred cCcEEEEEEEccCccce-EEeecCC------CEEEEEcCCEEEEEEccCC-CCCCeEEEEEEEecceeee
Q psy14060 63 AKSQQVQKEKKGDKEIV-RKITATE------TTEMEHKGKIQERVVDASE-LDDDGYYAITERKYYALSD 124 (283)
Q Consensus 63 g~~v~l~C~~~g~~~i~-~~~~~~~------~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~n~~~~~~ 124 (283)
|+.++|.|.+.|+|... .|..... ....... ...|.|.++. .+|+|.|+|.|.|..|...
T Consensus 19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~--~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~ 86 (91)
T cd04967 19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV--GGNLVISNPSKAKDAGRYQCLASNIVGTVL 86 (91)
T ss_pred CCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE--CCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence 34699999999988333 3332211 1111111 2368888877 4999999999999988543
No 229
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.37 E-value=3.6e-06 Score=56.74 Aligned_cols=66 Identities=17% Similarity=0.322 Sum_probs=45.8
Q ss_pred CCcEEEEEEEeeecCCEEEEEeCCEecCC---------C-----CC--eEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060 148 QDQARFEVEFDGDPLPTIKWFREDFPITS---------S-----PD--FQIHTFSTKSILIMRQVFMEDSGVFAVIAENR 211 (283)
Q Consensus 148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~~---------~-----~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 211 (283)
|++|+|.|.........+.|++....... . .. -+..... ..+|.|.+++.+|+|.|+|.+...
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~-~~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYP-NGSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcC-CceEEEccCCchhcEEEEEEEEcC
Confidence 78999999987756668999987533210 0 00 1112222 267999999999999999999877
Q ss_pred Cce
Q psy14060 212 GGK 214 (283)
Q Consensus 212 ~g~ 214 (283)
.+.
T Consensus 80 ~~~ 82 (92)
T cd05741 80 NGV 82 (92)
T ss_pred CCc
Confidence 643
No 230
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.36 E-value=1.1e-05 Score=56.26 Aligned_cols=79 Identities=16% Similarity=0.176 Sum_probs=52.9
Q ss_pred CCCcEEEEEEEeeec----------CCEEEEEeCC--Ee---c---------CCC--CCeEEE---EeCCEEEEEEcCCC
Q psy14060 147 EQDQARFEVEFDGDP----------LPTIKWFRED--FP---I---------TSS--PDFQIH---TFSTKSILIMRQVF 197 (283)
Q Consensus 147 ~g~~v~l~C~~~g~p----------~~~~~W~k~~--~~---~---------~~~--~~~~~~---~~~~~~~l~i~~~~ 197 (283)
.|++++|.|.....+ ...+.|+|.. .. + ... .++.+. ......+|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 488999999986533 2569999852 11 0 000 122221 11234679999999
Q ss_pred CCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060 198 MEDSGVFAVIAENRGGKAKCSANLVVEE 225 (283)
Q Consensus 198 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 225 (283)
.+|+|.|.|.+............|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999988766666667776653
No 231
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.34 E-value=2.4e-06 Score=54.98 Aligned_cols=69 Identities=10% Similarity=0.077 Sum_probs=43.9
Q ss_pred CceeeecCCeeeecCcEEEEEEEccCc-cce-EEe---ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060 50 PSASGVHGKEIHTAKSQQVQKEKKGDK-EIV-RKI---TATETTEMEHKGKIQERVVDASELDDDGYYAITERK 118 (283)
Q Consensus 50 p~~~~~~~~~v~~g~~v~l~C~~~g~~-~i~-~~~---~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n 118 (283)
|.+.......+..+..+.|.|.+.+.+ ... +|. ................|.|.++..+|.|.|+|.|.|
T Consensus 2 P~I~~~~~~~~~~~~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGSVTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp SEEEEESTSEEETTEEEEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CEEEEcCCCcEeeceeEEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 333433444333344599999999887 433 444 111111112233577899999999999999999987
No 232
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.34 E-value=7.9e-06 Score=53.26 Aligned_cols=74 Identities=16% Similarity=0.241 Sum_probs=49.2
Q ss_pred EEEEEEEee-ecCCEEEEEeCCEecCCCCCeEEEEeC---CEEEEEEcCCCCCCCEEEEEEEEeCCce-eEEEEEEEEE
Q psy14060 151 ARFEVEFDG-DPLPTIKWFREDFPITSSPDFQIHTFS---TKSILIMRQVFMEDSGVFAVIAENRGGK-AKCSANLVVE 224 (283)
Q Consensus 151 v~l~C~~~g-~p~~~~~W~k~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~ 224 (283)
+.|.|.+.| .|.+.|+|||++.++...........+ ..++|.|..-...|...|+|.|.|..-. ......|.|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 679999976 488899999999998754221111111 2456888777777777999999987532 3333444443
No 233
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.34 E-value=1.6e-06 Score=54.11 Aligned_cols=54 Identities=13% Similarity=0.101 Sum_probs=33.2
Q ss_pred cCcEEEEEEE-ccCccce-EEeecCC------CEEEEEcCC-EE-EEEEccCCCCCCeEEEEEE
Q psy14060 63 AKSQQVQKEK-KGDKEIV-RKITATE------TTEMEHKGK-IQ-ERVVDASELDDDGYYAITE 116 (283)
Q Consensus 63 g~~v~l~C~~-~g~~~i~-~~~~~~~------~~~~~~~~~-~~-~L~i~~~~~~D~G~Y~C~a 116 (283)
|++++|.|.+ .+.+... .|..... .......+. .. .|.|.+++.+|+|.|+|.+
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 6789999999 5544322 3332221 111111111 11 3999999999999999975
No 234
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.32 E-value=4.9e-06 Score=56.50 Aligned_cols=77 Identities=9% Similarity=0.063 Sum_probs=50.8
Q ss_pred ecCCceeecCCCcEEEEEEEee-ecCCE--EEEEeCCEecCCCCCeE--EEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060 138 KKIQPCRAFEQDQARFEVEFDG-DPLPT--IKWFREDFPITSSPDFQ--IHTFSTKSILIMRQVFMEDSGVFAVIAENRG 212 (283)
Q Consensus 138 ~~~~~~~~~~g~~v~l~C~~~g-~p~~~--~~W~k~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 212 (283)
..+.+..+.+|+.++|.|.+.| .|.+. +.|||++..+....... -.......+|.+.....+|...|+|.|.+..
T Consensus 6 l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l 85 (100)
T cd05755 6 LSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDL 85 (100)
T ss_pred EecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEecc
Confidence 3444456789999999999976 46665 79999999886532111 0111124467776554455559999998865
Q ss_pred ce
Q psy14060 213 GK 214 (283)
Q Consensus 213 g~ 214 (283)
+.
T Consensus 86 ~~ 87 (100)
T cd05755 86 RP 87 (100)
T ss_pred Cc
Confidence 44
No 235
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.31 E-value=1.1e-06 Score=59.18 Aligned_cols=60 Identities=17% Similarity=0.044 Sum_probs=45.1
Q ss_pred eeeecCcEEEEEE-EccCccce-EE-------eecCCCEEEEEcCCEEEEEEccCCCCCCe-EEEEEEEecce
Q psy14060 59 EIHTAKSQQVQKE-KKGDKEIV-RK-------ITATETTEMEHKGKIQERVVDASELDDDG-YYAITERKYYA 121 (283)
Q Consensus 59 ~v~~g~~v~l~C~-~~g~~~i~-~~-------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~a~n~~~ 121 (283)
.|.+|+.+.|.|. ..|.|+.. .| +....|+.+. ....|.|.++..+|+| .|.|.|.|...
T Consensus 14 ~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~---~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 14 EVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG---QNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred EEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC---CCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 4778999999997 58888443 22 2334455444 3478999999999999 89999998864
No 236
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.31 E-value=2.4e-06 Score=55.80 Aligned_cols=67 Identities=10% Similarity=0.104 Sum_probs=45.3
Q ss_pred CceeeecCCeeeecCcEEEEEEEccCccce-EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 50 PSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 50 p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
|.+.... ..+.+|+.+.|.|.+.+.|... .|..... .+...... |.+.+++.+|+|.|+|.+.+..+
T Consensus 2 P~l~~~~-~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~--~~~~~~~~--~~~~~~~~~~~g~y~C~~~~~~~ 69 (80)
T PF13895_consen 2 PVLSSSP-QSVEEGDSVTLTCSVSGNPPPQVQWYKNGS--PINSSQNG--LFIPNVSPEDSGNYTCRASNGSG 69 (80)
T ss_dssp -EEEEES-SEEETTSEEEEEEEEESSSSSEEEEEETTE--EEEEESSE--EEESSEEGGGTEEEEEEEEETTE
T ss_pred cEEEccc-eEEeCCCcEEEEEEEEcccceeeeeeeeee--eeeeeeee--eeeeeeccccCEEEEEEEEeCCC
Confidence 3344333 3488899999999999887543 4444332 22222122 77789999999999999998665
No 237
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.30 E-value=1.4e-06 Score=59.21 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=35.4
Q ss_pred EecCCceEEcCCCeEEEEEEEEeeCCCeeEEeeCCEEecCC
Q psy14060 240 LTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVK 280 (283)
Q Consensus 240 ~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~l~~~ 280 (283)
...|.+..+.+|+.+.|.|.+.|.|.|.+.|+|||+.+...
T Consensus 3 ~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~ 43 (95)
T cd05722 3 LSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLV 43 (95)
T ss_pred EECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccc
Confidence 34556677889999999999999999999999999988754
No 238
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.30 E-value=1.8e-06 Score=58.40 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=34.3
Q ss_pred CeEEecCCceEEcCC---CeEEEEEEEEeeCCCeeEEeeCCEEecC
Q psy14060 237 PSFLTTISSAVINVG---QLARFDAKISATKPLDVYWLKVSSLSDV 279 (283)
Q Consensus 237 p~~~~~~~~~~v~~g---~~v~L~C~~~g~p~~~v~W~~~g~~l~~ 279 (283)
|.|...|.+..+.++ ..+.|.|.+.|.|.|.++|+++|..+..
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~ 47 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDL 47 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccC
Confidence 566666666655444 4799999999999999999999998854
No 239
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.29 E-value=1.1e-05 Score=56.78 Aligned_cols=74 Identities=14% Similarity=0.264 Sum_probs=48.6
Q ss_pred CCceeecCCCcEEEEEEEeeec----CCEEEEEeC----CEe--c---C------CCCCe--EEEE----eCCEEEEEEc
Q psy14060 140 IQPCRAFEQDQARFEVEFDGDP----LPTIKWFRE----DFP--I---T------SSPDF--QIHT----FSTKSILIMR 194 (283)
Q Consensus 140 ~~~~~~~~g~~v~l~C~~~g~p----~~~~~W~k~----~~~--~---~------~~~~~--~~~~----~~~~~~l~i~ 194 (283)
+..+.+..|+++.|.|.....+ ...+.|++. +.. + . ...++ +... .....+|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4557889999999999986432 236999752 111 1 0 01111 1111 1234579999
Q ss_pred CCCCCCCEEEEEEEEeCCc
Q psy14060 195 QVFMEDSGVFAVIAENRGG 213 (283)
Q Consensus 195 ~~~~~d~G~Y~C~a~n~~g 213 (283)
+++.+|+|.|+|.+.|..+
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred eCChhhCEEEEEEEEeCCC
Confidence 9999999999999988654
No 240
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.26 E-value=5.4e-06 Score=56.29 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=48.5
Q ss_pred cCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCC-eEEEE--eCC---EEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060 146 FEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPD-FQIHT--FST---KSILIMRQVFMEDSGVFAVIAENRGGK 214 (283)
Q Consensus 146 ~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~-~~~~~--~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 214 (283)
..|+.+.|.|.+.|. |. ..++|+++|..+..... ..... .+. .+.|.+......+.+.|+|.+.|....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 467899999999997 54 68999999998865432 11111 111 234666666667999999999987643
No 241
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.26 E-value=1.1e-05 Score=57.05 Aligned_cols=73 Identities=8% Similarity=0.174 Sum_probs=52.1
Q ss_pred ecCCceeecCCCcEEEEEEEeee-cCCEEEEEeCC--Ee---c---------CCCCCeEEEE--eCCEEEEEEcCCCCCC
Q psy14060 138 KKIQPCRAFEQDQARFEVEFDGD-PLPTIKWFRED--FP---I---------TSSPDFQIHT--FSTKSILIMRQVFMED 200 (283)
Q Consensus 138 ~~~~~~~~~~g~~v~l~C~~~g~-p~~~~~W~k~~--~~---~---------~~~~~~~~~~--~~~~~~l~i~~~~~~d 200 (283)
..+..+.+..|++++|.|..... ....+.|||.. .. + ....++.+.. .....+|.|.++..+|
T Consensus 4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D 83 (116)
T cd07706 4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED 83 (116)
T ss_pred EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence 44566789999999999998753 45679999842 11 1 0123444432 2346789999999999
Q ss_pred CEEEEEEEEe
Q psy14060 201 SGVFAVIAEN 210 (283)
Q Consensus 201 ~G~Y~C~a~n 210 (283)
+|.|.|.+..
T Consensus 84 sg~Y~C~~~~ 93 (116)
T cd07706 84 SAKYFCALST 93 (116)
T ss_pred CEEEEEEEEC
Confidence 9999999874
No 242
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.25 E-value=3.1e-06 Score=52.15 Aligned_cols=59 Identities=12% Similarity=0.106 Sum_probs=39.1
Q ss_pred ecCcEEEEEEEccCccce-EEeecCCCE--EEEEcCCEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060 62 TAKSQQVQKEKKGDKEIV-RKITATETT--EMEHKGKIQERVVDASELDDDGYYAITERKYY 120 (283)
Q Consensus 62 ~g~~v~l~C~~~g~~~i~-~~~~~~~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~ 120 (283)
+|+.+.|.|.+.+.+... .|....... ..........|.|.+++.+|+|.|+|.+.|..
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 62 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSA 62 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence 367899999987776332 333211111 11112245689999999999999999998864
No 243
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.25 E-value=8.5e-06 Score=53.90 Aligned_cols=63 Identities=10% Similarity=0.130 Sum_probs=43.3
Q ss_pred eeecCcEEEEEEEccCccce-EEeecC------CCEEE-EEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 60 IHTAKSQQVQKEKKGDKEIV-RKITAT------ETTEM-EHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 60 v~~g~~v~l~C~~~g~~~i~-~~~~~~------~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
+..|+.+.|.|.+.+.|... .|.... ..... ........|.|.++..+|+|.|.|.+.|..+.
T Consensus 6 ~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~ 76 (85)
T cd05729 6 VPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGS 76 (85)
T ss_pred ecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCce
Confidence 44677899999999887322 332221 11111 11234567999999999999999999998774
No 244
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.24 E-value=2.4e-05 Score=54.77 Aligned_cols=73 Identities=16% Similarity=0.292 Sum_probs=52.5
Q ss_pred cCCceeecCCCcEEEEEEEe-eecCCEEEEEeCCE-----ecC----C----------CCCeEEEEe--CCEEEEEEcCC
Q psy14060 139 KIQPCRAFEQDQARFEVEFD-GDPLPTIKWFREDF-----PIT----S----------SPDFQIHTF--STKSILIMRQV 196 (283)
Q Consensus 139 ~~~~~~~~~g~~v~l~C~~~-g~p~~~~~W~k~~~-----~~~----~----------~~~~~~~~~--~~~~~l~i~~~ 196 (283)
.+..+.+..|+++.|.|... ......+.|++... .+. . ..++.+... ....+|.|.++
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l 86 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL 86 (114)
T ss_dssp EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence 35667899999999999998 44556899998322 111 0 122333333 23568999999
Q ss_pred CCCCCEEEEEEEEeC
Q psy14060 197 FMEDSGVFAVIAENR 211 (283)
Q Consensus 197 ~~~d~G~Y~C~a~n~ 211 (283)
..+|+|.|.|.+...
T Consensus 87 ~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 87 QPSDSGTYFCQVSTS 101 (114)
T ss_dssp SGGGEEEEEEEEEES
T ss_pred CcCcCEEEEEEEEEC
Confidence 999999999999876
No 245
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.24 E-value=1.1e-05 Score=57.09 Aligned_cols=74 Identities=11% Similarity=0.199 Sum_probs=48.8
Q ss_pred CCceeecCCCcEEEEEEEeeec----CCEEEEEeCCE------ec---------C-CCCC----eEEEE--eCCEEEEEE
Q psy14060 140 IQPCRAFEQDQARFEVEFDGDP----LPTIKWFREDF------PI---------T-SSPD----FQIHT--FSTKSILIM 193 (283)
Q Consensus 140 ~~~~~~~~g~~v~l~C~~~g~p----~~~~~W~k~~~------~~---------~-~~~~----~~~~~--~~~~~~l~i 193 (283)
+..+.+..|+.++|.|...... ...+.|++... .+ . ...+ +.+.. .....+|.|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4557788999999999986432 24699986321 11 0 0111 11111 122467999
Q ss_pred cCCCCCCCEEEEEEEEeCCc
Q psy14060 194 RQVFMEDSGVFAVIAENRGG 213 (283)
Q Consensus 194 ~~~~~~d~G~Y~C~a~n~~g 213 (283)
.++..+|+|.|+|.+.|...
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eeCCcccCEEEEEEEEeCCC
Confidence 99999999999999987654
No 246
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.22 E-value=1.1e-05 Score=53.04 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=42.7
Q ss_pred EEEEEEEee-ecCCEEEEEeCCEecCCCCCeEEEEeCC----EEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060 151 ARFEVEFDG-DPLPTIKWFREDFPITSSPDFQIHTFST----KSILIMRQVFMEDSGVFAVIAENRGGK 214 (283)
Q Consensus 151 v~l~C~~~g-~p~~~~~W~k~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 214 (283)
+.|.|.+.+ +|.+.++|++++..+...........+. .+.|.+......+.+.|+|.+.|....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 689999976 4889999999999886432111111111 234666555566678999999987643
No 247
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.20 E-value=2.8e-06 Score=57.23 Aligned_cols=62 Identities=8% Similarity=0.020 Sum_probs=43.1
Q ss_pred eeeecCcEEEEEEEc-cCccce-EEeec--------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 59 EIHTAKSQQVQKEKK-GDKEIV-RKITA--------TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~-g~~~i~-~~~~~--------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
.+.+|+.+.|.|... |.|... .|+.. ..+..+.. ....|.|.+++.+|+|.|+|.|.|....
T Consensus 14 ~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~--~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 14 KVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ--TNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred eeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC--CCCcEEEeecCHhhCceeEEEEEecccC
Confidence 477899999999764 556433 33222 12222222 3568999999999999999999998653
No 248
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.20 E-value=1e-05 Score=56.31 Aligned_cols=66 Identities=23% Similarity=0.299 Sum_probs=45.8
Q ss_pred eecCCCcEEEEEEEeee-cCCEEEEEeCCEe---------c--C-----------CCCCeEEE--EeCCEEEEEEcCCCC
Q psy14060 144 RAFEQDQARFEVEFDGD-PLPTIKWFREDFP---------I--T-----------SSPDFQIH--TFSTKSILIMRQVFM 198 (283)
Q Consensus 144 ~~~~g~~v~l~C~~~g~-p~~~~~W~k~~~~---------~--~-----------~~~~~~~~--~~~~~~~l~i~~~~~ 198 (283)
.+..|++++|.|...+. ....+.|||.... + . ...++.+. .......|.|.++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 46789999999998763 3457999985321 0 0 01233332 223356799999999
Q ss_pred CCCEEEEEEEE
Q psy14060 199 EDSGVFAVIAE 209 (283)
Q Consensus 199 ~d~G~Y~C~a~ 209 (283)
+|+|.|+|...
T Consensus 82 ~Dsg~YyCa~~ 92 (107)
T cd07700 82 EDSGTYFCMTV 92 (107)
T ss_pred HHCEEEEEeEc
Confidence 99999999975
No 249
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.20 E-value=2e-05 Score=51.71 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=46.9
Q ss_pred eeecCcEEEEEEEccCccce-EEeec-------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 60 IHTAKSQQVQKEKKGDKEIV-RKITA-------TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 60 v~~g~~v~l~C~~~g~~~i~-~~~~~-------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
+..|+.+.|.|.+.+.+... .|... ..++..........|.|.++..+|+|.|.|.+.+..+
T Consensus 6 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~ 75 (86)
T smart00410 6 VKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSG 75 (86)
T ss_pred EeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCC
Confidence 56788999999999875222 33333 4566666555568899999999999999999987655
No 250
>smart00409 IG Immunoglobulin.
Probab=98.20 E-value=2e-05 Score=51.71 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=46.9
Q ss_pred eeecCcEEEEEEEccCccce-EEeec-------CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 60 IHTAKSQQVQKEKKGDKEIV-RKITA-------TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 60 v~~g~~v~l~C~~~g~~~i~-~~~~~-------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
+..|+.+.|.|.+.+.+... .|... ..++..........|.|.++..+|+|.|.|.+.+..+
T Consensus 6 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~ 75 (86)
T smart00409 6 VKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSG 75 (86)
T ss_pred EeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCC
Confidence 56788999999999875222 33333 4566666555568899999999999999999987655
No 251
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.17 E-value=1.1e-05 Score=55.80 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=46.5
Q ss_pred eecCCCcEEEEEEEeeecCCEEEEEeCCEe----c------CC------------CCCeEEEEeCCEEEEEEcCCCCCCC
Q psy14060 144 RAFEQDQARFEVEFDGDPLPTIKWFREDFP----I------TS------------SPDFQIHTFSTKSILIMRQVFMEDS 201 (283)
Q Consensus 144 ~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~----~------~~------------~~~~~~~~~~~~~~l~i~~~~~~d~ 201 (283)
.+..|++++|.|.........+.|||.... + .. ..++..........|.|.++..+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 357899999999986644567999985321 1 00 1123332334566899999999999
Q ss_pred EEEEEEEEe
Q psy14060 202 GVFAVIAEN 210 (283)
Q Consensus 202 G~Y~C~a~n 210 (283)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999998753
No 252
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.17 E-value=4.4e-05 Score=53.09 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=51.5
Q ss_pred CCcEEEEEEEeeec-------CCEEEEEeCC-----Eec----CCC----------CCeEEEEe---CCEEEEEEcCCCC
Q psy14060 148 QDQARFEVEFDGDP-------LPTIKWFRED-----FPI----TSS----------PDFQIHTF---STKSILIMRQVFM 198 (283)
Q Consensus 148 g~~v~l~C~~~g~p-------~~~~~W~k~~-----~~~----~~~----------~~~~~~~~---~~~~~l~i~~~~~ 198 (283)
|+++.|.|...-.| .+.+.|.|.. ... ... .+..+... ....+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 67899999965322 3689998751 111 011 12222221 1356899999999
Q ss_pred CCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060 199 EDSGVFAVIAENRGGKAKCSANLVVEE 225 (283)
Q Consensus 199 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 225 (283)
+|+|.|.|.+............|.|..
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999998766666677777653
No 253
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.15 E-value=1.4e-05 Score=54.58 Aligned_cols=70 Identities=10% Similarity=0.062 Sum_probs=48.9
Q ss_pred eeecCCCcEEEEEEEee-ecCCEEEEEeCCEe-----c--------CCCCCeEEEE--eCCEEEEEEcCCCCCCCEEEEE
Q psy14060 143 CRAFEQDQARFEVEFDG-DPLPTIKWFREDFP-----I--------TSSPDFQIHT--FSTKSILIMRQVFMEDSGVFAV 206 (283)
Q Consensus 143 ~~~~~g~~v~l~C~~~g-~p~~~~~W~k~~~~-----~--------~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C 206 (283)
+.+.+|++++|.|.... .....+.|+|.... + ....++.+.. ......|.|.++..+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 35678999999999865 34567899986421 1 0112344332 2345789999999999999999
Q ss_pred EEEeCC
Q psy14060 207 IAENRG 212 (283)
Q Consensus 207 ~a~n~~ 212 (283)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 986543
No 254
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.15 E-value=2.9e-06 Score=56.90 Aligned_cols=59 Identities=8% Similarity=0.030 Sum_probs=39.6
Q ss_pred eeecCcEEEEEEEccCc-cceEEeecCCC--------EEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 60 IHTAKSQQVQKEKKGDK-EIVRKITATET--------TEMEHKGKIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 60 v~~g~~v~l~C~~~g~~-~i~~~~~~~~~--------~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
+.+|+.+.|.|.+.+.+ .+ .|...+.. ..... ....|.|.+++.+|+|.|.|.+.+..+
T Consensus 8 v~~g~~v~L~C~~~~p~~~i-~W~k~~~~~~~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~~~~~ 75 (89)
T cd04979 8 VVEGNSVFLECSPKSNLASV-VWLFQGGPLQRKEEPEERLLV--TEDGLLIRSVSPADAGVYTCQSVEHGF 75 (89)
T ss_pred EECCCcEEEEEeCCCCCceE-EEEECCcccccccCcCceEEE--cCCCEEEccCCHHHCEEEEEEEecCcc
Confidence 66788999999998743 33 33322111 11221 123588999999999999999987754
No 255
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.13 E-value=2.6e-05 Score=51.43 Aligned_cols=63 Identities=16% Similarity=0.268 Sum_probs=43.9
Q ss_pred EEEEEEEee-ecCCEEEEEeCCEecCCCCCeEEEEeCC------EEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060 151 ARFEVEFDG-DPLPTIKWFREDFPITSSPDFQIHTFST------KSILIMRQVFMEDSGVFAVIAENRGGK 214 (283)
Q Consensus 151 v~l~C~~~g-~p~~~~~W~k~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 214 (283)
+.|.|.+.| +|.+.|+|+++|..+..... .+...+. .+.|.+......+...|+|.+.|....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 689999987 48899999999998765322 2222211 234666566667778999999987643
No 256
>KOG3515|consensus
Probab=98.12 E-value=1.2e-05 Score=72.70 Aligned_cols=173 Identities=14% Similarity=0.069 Sum_probs=111.0
Q ss_pred EEEEEEccCCCCCCeEEEEEEEecce---eeeeeccCCCCCCeEEecCCc-eeecCCCcEEEEEEEeeec-CCEEEEEeC
Q psy14060 96 IQERVVDASELDDDGYYAITERKYYA---LSDLSEQKPAKPPVFTKKIQP-CRAFEQDQARFEVEFDGDP-LPTIKWFRE 170 (283)
Q Consensus 96 ~~~L~i~~~~~~D~G~Y~C~a~n~~~---~~~~~~~~~~~~p~~~~~~~~-~~~~~g~~v~l~C~~~g~p-~~~~~W~k~ 170 (283)
...+.+......|.|.|+|.+.+... .+....+.+..+|.++..... ....+++.....-.+.+.| .+.+.|.++
T Consensus 360 ~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~ 439 (741)
T KOG3515|consen 360 VISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFR 439 (741)
T ss_pred eEEeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheec
Confidence 44556667888999999999887764 222233344445555443222 3344444444444444655 467999998
Q ss_pred CEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcC
Q psy14060 171 DFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250 (283)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~ 250 (283)
+..+................+-+.++...|.|.|.|.+.|+.|.......+.+.. .|.+...........
T Consensus 440 ~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~----------sp~~~~~~~~~~~~~ 509 (741)
T KOG3515|consen 440 LYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHT----------SPHNHHLQDQVEGAT 509 (741)
T ss_pred ceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeecccc----------CCcccccccccccCC
Confidence 8887665443222222222233556888999999999999998877766655553 455544444456678
Q ss_pred CCeEEEEEEEEeeCCC--eeEEeeCCEEec
Q psy14060 251 GQLARFDAKISATKPL--DVYWLKVSSLSD 278 (283)
Q Consensus 251 g~~v~L~C~~~g~p~~--~v~W~~~g~~l~ 278 (283)
|+++.+.|.....+.- .+.|.+.|.+..
T Consensus 510 ~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~ 539 (741)
T KOG3515|consen 510 GNSVDGECMQDEQPQDQQMHHEPRSGEPPS 539 (741)
T ss_pred CCcccceeeccccccchhhhcccccCCCCc
Confidence 8889999998876644 488999887653
No 257
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.12 E-value=2.6e-05 Score=51.37 Aligned_cols=62 Identities=18% Similarity=0.296 Sum_probs=43.0
Q ss_pred EEEEEEEee-ecCCEEEEEeCCEecCCCCCeEEEEeC-----CEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060 151 ARFEVEFDG-DPLPTIKWFREDFPITSSPDFQIHTFS-----TKSILIMRQVFMEDSGVFAVIAENRG 212 (283)
Q Consensus 151 v~l~C~~~g-~p~~~~~W~k~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~ 212 (283)
+.|.|.+.| +|...++|+|+|..+............ ..+.|.+......+...|+|.+.|..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 689999987 677899999999997653222111111 13357776666667789999998865
No 258
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.11 E-value=5.9e-05 Score=51.71 Aligned_cols=74 Identities=19% Similarity=0.340 Sum_probs=47.5
Q ss_pred cEEEEEEEeeec---CCEEEEEeCCE-----ec---C--------CC--CCeEEEE--eCCEEEEEEcCCCCCCCEEEEE
Q psy14060 150 QARFEVEFDGDP---LPTIKWFREDF-----PI---T--------SS--PDFQIHT--FSTKSILIMRQVFMEDSGVFAV 206 (283)
Q Consensus 150 ~v~l~C~~~g~p---~~~~~W~k~~~-----~~---~--------~~--~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C 206 (283)
++.|.|...... ...+.|+|... .+ . .. .+..+.. .....+|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 588999886433 34789998421 11 0 00 1223322 1234579999999999999999
Q ss_pred EEEe-CCceeEEEEEEEE
Q psy14060 207 IAEN-RGGKAKCSANLVV 223 (283)
Q Consensus 207 ~a~n-~~g~~~~~~~l~v 223 (283)
.+.+ ..|..+....|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9987 5566665666654
No 259
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.09 E-value=4.6e-05 Score=51.93 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=48.6
Q ss_pred CCcEEEEEEEeeecC-CEEEEEeCCEe----c----C-CC--------CCeEEE-EeCCEEEEEEcCCCCCCCEEEEEEE
Q psy14060 148 QDQARFEVEFDGDPL-PTIKWFREDFP----I----T-SS--------PDFQIH-TFSTKSILIMRQVFMEDSGVFAVIA 208 (283)
Q Consensus 148 g~~v~l~C~~~g~p~-~~~~W~k~~~~----~----~-~~--------~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a 208 (283)
|++++|.|....... -.+.|+|.... + . .. .+..+. ......+|.|.++..+|+|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 688999998754332 25899985321 0 0 00 011111 1123467999999999999999997
Q ss_pred Ee-CCceeEEEEEEEE
Q psy14060 209 EN-RGGKAKCSANLVV 223 (283)
Q Consensus 209 ~n-~~g~~~~~~~l~v 223 (283)
.. ..|.......|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 64 4566666666665
No 260
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.06 E-value=3.1e-05 Score=53.99 Aligned_cols=61 Identities=8% Similarity=0.035 Sum_probs=43.3
Q ss_pred eeeecCcEEEEEEEccCc--cceEEe--------------------ecCCCEEEEE--cCCEEEEEEccCCCCCCeEEEE
Q psy14060 59 EIHTAKSQQVQKEKKGDK--EIVRKI--------------------TATETTEMEH--KGKIQERVVDASELDDDGYYAI 114 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~--~i~~~~--------------------~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C 114 (283)
.+.+|++|+|.|.+.+.+ .+. |. ....++.+.. ......|.|.+++.+|+|.|.|
T Consensus 9 ~~~~G~~v~L~C~~~~~~~~~v~-W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C 87 (109)
T cd04983 9 SVQEGENVTLNCNYSTSTFYYLF-WYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFC 87 (109)
T ss_pred EEcCCCCEEEEEEECCCCccEEE-EEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEE
Confidence 366788999999998754 222 11 1234555443 2368899999999999999999
Q ss_pred EEEecc
Q psy14060 115 TERKYY 120 (283)
Q Consensus 115 ~a~n~~ 120 (283)
.+.+..
T Consensus 88 ~~~~~~ 93 (109)
T cd04983 88 ALSESG 93 (109)
T ss_pred EEecCC
Confidence 987653
No 261
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.05 E-value=8.7e-06 Score=54.78 Aligned_cols=58 Identities=10% Similarity=0.123 Sum_probs=40.4
Q ss_pred eeecCcEEEEEEEccCc-------cce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 60 IHTAKSQQVQKEKKGDK-------EIV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 60 v~~g~~v~l~C~~~g~~-------~i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
+.+|+...|.|...+.. .+. +.+....+ .+. ....|.|.++..+|+|.|+|.+.|..+
T Consensus 7 ~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~-~~~---~~~~L~I~~v~~~DsG~YtC~~~n~~~ 76 (92)
T cd05757 7 LFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRK-RFV---KGSKLLIQNVTEEDAGNYTCKLTFTHN 76 (92)
T ss_pred EeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCcc-EEe---cCCEEEEeeCChhhCEEEEEEEEecCC
Confidence 66788999999876432 332 23332222 221 345899999999999999999998866
No 262
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.05 E-value=0.00011 Score=50.12 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=30.1
Q ss_pred EEEEEcCCCCCCCEEEEEEEEe-CCceeEEEEEEEE
Q psy14060 189 SILIMRQVFMEDSGVFAVIAEN-RGGKAKCSANLVV 223 (283)
Q Consensus 189 ~~l~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~v 223 (283)
.+|.|.+++.+|.|.|.|.+.+ ..|..+....|.|
T Consensus 63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 5799999999999999999998 5777777777765
No 263
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.04 E-value=5.2e-05 Score=53.78 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=49.0
Q ss_pred cCCceeecCCCcEEEEEEEeeec------CCEEEEEeCCEe------c--CC---------CCCeEEE--EeCCEEEEEE
Q psy14060 139 KIQPCRAFEQDQARFEVEFDGDP------LPTIKWFREDFP------I--TS---------SPDFQIH--TFSTKSILIM 193 (283)
Q Consensus 139 ~~~~~~~~~g~~v~l~C~~~g~p------~~~~~W~k~~~~------~--~~---------~~~~~~~--~~~~~~~l~i 193 (283)
.+..+.+..|+.|+|.|...... ...+.||+.... + .. ..++.+. .....+.|.|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 34567888999999999875311 245899986321 0 00 0133332 1334578999
Q ss_pred cCCCCCCCEEEEEEEEeC
Q psy14060 194 RQVFMEDSGVFAVIAENR 211 (283)
Q Consensus 194 ~~~~~~d~G~Y~C~a~n~ 211 (283)
.++..+|+|.|.|.+...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999998664
No 264
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.02 E-value=0.0002 Score=50.11 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=32.6
Q ss_pred EEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060 188 KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225 (283)
Q Consensus 188 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 225 (283)
..+|.|.+++.+|+|.|.|.+.+..........|.|..
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 46899999999999999999998877777777777764
No 265
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.01 E-value=6.5e-05 Score=56.20 Aligned_cols=84 Identities=14% Similarity=0.197 Sum_probs=59.1
Q ss_pred ceeecCCCcEEEEEEEe-eecCCEEEEEeCCEecC----------CC--CCeEE-EEeCCEEEEEEcCCCCCCCEEEEEE
Q psy14060 142 PCRAFEQDQARFEVEFD-GDPLPTIKWFREDFPIT----------SS--PDFQI-HTFSTKSILIMRQVFMEDSGVFAVI 207 (283)
Q Consensus 142 ~~~~~~g~~v~l~C~~~-g~p~~~~~W~k~~~~~~----------~~--~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~ 207 (283)
...+.+|+++.|.|... +...+.+.|+|....+. +. .++.+ ...-....|.|.+++.+|+|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 46789999999999984 54567899999743221 11 12221 1222346899999999999999998
Q ss_pred EEe-CCc-eeEEEEEEEEEe
Q psy14060 208 AEN-RGG-KAKCSANLVVEE 225 (283)
Q Consensus 208 a~n-~~g-~~~~~~~l~v~~ 225 (283)
..- +.| ..+..+.|.|..
T Consensus 104 F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred EEecCCCCCceeEEEEEEEc
Confidence 754 345 677778888875
No 266
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.01 E-value=2.9e-05 Score=53.89 Aligned_cols=60 Identities=8% Similarity=0.070 Sum_probs=41.6
Q ss_pred eeecCcEEEEEEEccCc---cce----------EEee---------cCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060 60 IHTAKSQQVQKEKKGDK---EIV----------RKIT---------ATETTEMEHKGKIQERVVDASELDDDGYYAITER 117 (283)
Q Consensus 60 v~~g~~v~l~C~~~g~~---~i~----------~~~~---------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 117 (283)
+.+|++|+|.|.+.+.. .+. ..+. ...++.....+....|.|.+++++|+|.|.|.+.
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~ 91 (106)
T cd04980 12 VSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQQY 91 (106)
T ss_pred ECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEEEe
Confidence 66788999999987653 121 1110 0134555445567889999999999999999875
Q ss_pred ec
Q psy14060 118 KY 119 (283)
Q Consensus 118 n~ 119 (283)
+.
T Consensus 92 ~~ 93 (106)
T cd04980 92 GT 93 (106)
T ss_pred CC
Confidence 43
No 267
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.99 E-value=3.2e-05 Score=52.85 Aligned_cols=59 Identities=7% Similarity=0.136 Sum_probs=42.6
Q ss_pred eeecCcEEEEEEEccC--c--cce----------EEe---------ecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEE
Q psy14060 60 IHTAKSQQVQKEKKGD--K--EIV----------RKI---------TATETTEMEHKGKIQERVVDASELDDDGYYAITE 116 (283)
Q Consensus 60 v~~g~~v~l~C~~~g~--~--~i~----------~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 116 (283)
+.+|++|+|.|...+. . .+. ..+ ....++.....+....|.|.+++++|+|.|.|.+
T Consensus 3 v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~ 82 (98)
T cd04984 3 VSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQV 82 (98)
T ss_pred cCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEEE
Confidence 5678899999998764 2 222 111 1123666666667889999999999999999987
Q ss_pred Ee
Q psy14060 117 RK 118 (283)
Q Consensus 117 ~n 118 (283)
.+
T Consensus 83 ~~ 84 (98)
T cd04984 83 WD 84 (98)
T ss_pred cc
Confidence 64
No 268
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.98 E-value=0.0002 Score=49.90 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=44.0
Q ss_pred eecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCeEE-EEeC----CEEEEEEcCCCCCCC-EEEEEEEEeCCce
Q psy14060 144 RAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDFQI-HTFS----TKSILIMRQVFMEDS-GVFAVIAENRGGK 214 (283)
Q Consensus 144 ~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~~~-~~~~----~~~~l~i~~~~~~d~-G~Y~C~a~n~~g~ 214 (283)
....|+.++|.|.+.|. |. ..++|+|||..+........ ..++ ..+.|.+... ..|. ..|+|.+.+....
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~-~~d~~~~ytC~V~H~~l~ 94 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLT-EDDVHSQVTCEVQHRTLQ 94 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECc-cccccCceEEEEEeCCCC
Confidence 44567889999999884 54 58999999999764221111 1111 1234555543 3443 4699999987533
No 269
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.97 E-value=4.5e-05 Score=52.68 Aligned_cols=61 Identities=10% Similarity=0.046 Sum_probs=42.3
Q ss_pred eeecCcEEEEEEEccC-c--cce--E--------Ee------------ecCCCEEEEEcC--CEEEEEEccCCCCCCeEE
Q psy14060 60 IHTAKSQQVQKEKKGD-K--EIV--R--------KI------------TATETTEMEHKG--KIQERVVDASELDDDGYY 112 (283)
Q Consensus 60 v~~g~~v~l~C~~~g~-~--~i~--~--------~~------------~~~~~~~~~~~~--~~~~L~i~~~~~~D~G~Y 112 (283)
+..|++++|.|.+.+. + .+. + .+ ....++.+.... ...+|.|.+++.+|+|.|
T Consensus 3 v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y 82 (105)
T cd00099 3 VSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVY 82 (105)
T ss_pred ecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence 5678899999998875 2 121 0 00 112344444333 678999999999999999
Q ss_pred EEEEEecc
Q psy14060 113 AITERKYY 120 (283)
Q Consensus 113 ~C~a~n~~ 120 (283)
.|.+.+..
T Consensus 83 ~C~v~~~~ 90 (105)
T cd00099 83 YCAVSLSG 90 (105)
T ss_pred EEEEecCC
Confidence 99988765
No 270
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.97 E-value=5.7e-05 Score=47.22 Aligned_cols=62 Identities=32% Similarity=0.474 Sum_probs=45.4
Q ss_pred EEEEEEEeeecCCEEEEEeCCEecCCCCCe----EEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060 151 ARFEVEFDGDPLPTIKWFREDFPITSSPDF----QIHTFSTKSILIMRQVFMEDSGVFAVIAENRG 212 (283)
Q Consensus 151 v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 212 (283)
+.|.|.+.+.+...+.|++++......... ..........|.|.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 368999988677899999988776543211 11112234579999999999999999998765
No 271
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.97 E-value=7.5e-05 Score=52.76 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=48.4
Q ss_pred CCceeecCCCcEEEEEEEeeec--CCEEEEEeCCE--e---c---C--------C---CCCeEEEEeC--CEEEEEEcCC
Q psy14060 140 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFREDF--P---I---T--------S---SPDFQIHTFS--TKSILIMRQV 196 (283)
Q Consensus 140 ~~~~~~~~g~~v~l~C~~~g~p--~~~~~W~k~~~--~---~---~--------~---~~~~~~~~~~--~~~~l~i~~~ 196 (283)
+....+..|++++|.|...+.. ...+.|||... . + . . ..++...... ....|.|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 4557789999999999876532 45689998531 1 1 0 0 1233333222 3457999999
Q ss_pred CCCCCEEEEEEEEe
Q psy14060 197 FMEDSGVFAVIAEN 210 (283)
Q Consensus 197 ~~~d~G~Y~C~a~n 210 (283)
..+|+|.|.|.+..
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 99999999998754
No 272
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.96 E-value=5.3e-05 Score=51.27 Aligned_cols=68 Identities=10% Similarity=0.041 Sum_probs=42.8
Q ss_pred CceeeecCCeeeecCcEEEEEEEccCccceEEeecCCC--E-EE---EEcCCEEEEEEccCCCCCCeEEEEEEE
Q psy14060 50 PSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATET--T-EM---EHKGKIQERVVDASELDDDGYYAITER 117 (283)
Q Consensus 50 p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~~~~~~~~~--~-~~---~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 117 (283)
|.+...++..|..|++|+|.|..........+...+.. . .. ...+....+.|.+++.+|+|.|.|...
T Consensus 2 P~l~a~p~~vV~~G~~VTL~C~~~~~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 2 PFLSAHPSPVVPSGENVTLQCHSDIRFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CEEEecCCCccCCCCeEEEEEecCCCCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 55555566668889999999977643321111111111 0 10 012246688999999999999999765
No 273
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.94 E-value=0.00024 Score=46.43 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=50.1
Q ss_pred eeecCCCcEEEEEEEeeecCC--EEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEE
Q psy14060 143 CRAFEQDQARFEVEFDGDPLP--TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN 220 (283)
Q Consensus 143 ~~~~~g~~v~l~C~~~g~p~~--~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 220 (283)
..+..|++++|.|.....+.| .+.|+..+..... .. .....+|.+..+..+|+|..+|.+....-.......
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-----~~-~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~ 82 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-----IL-NQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLD 82 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-----ec-cCCccEEEeceeCcccCCEEEEEEEECceEEEEEee
Confidence 467789999999999654444 8999875443221 00 123446999999999999999999754333333333
Q ss_pred EEE
Q psy14060 221 LVV 223 (283)
Q Consensus 221 l~v 223 (283)
+.|
T Consensus 83 V~V 85 (88)
T cd07694 83 IKV 85 (88)
T ss_pred EEE
Confidence 333
No 274
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.92 E-value=0.00015 Score=48.90 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=39.2
Q ss_pred CCcEEEEEEEeee-cCC-EEEEEeCCEecCCCCC-eEEEEe--CC---EEEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060 148 QDQARFEVEFDGD-PLP-TIKWFREDFPITSSPD-FQIHTF--ST---KSILIMRQVFMEDSGVFAVIAENRGG 213 (283)
Q Consensus 148 g~~v~l~C~~~g~-p~~-~~~W~k~~~~~~~~~~-~~~~~~--~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g 213 (283)
++.+.|.|.+.|. |.. .++|++++..+..... ...... +. .+.|.+. ..+.+.|+|.+.+...
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~---~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVP---PEDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEEC---CCCCCEEEEEEEeCCC
Confidence 6789999999995 553 8999999864332211 111111 11 1234443 3478899999987653
No 275
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=97.90 E-value=6.5e-05 Score=50.48 Aligned_cols=55 Identities=11% Similarity=0.020 Sum_probs=36.6
Q ss_pred eeecCcEEEEEEEccCccce-EEee------------cCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060 60 IHTAKSQQVQKEKKGDKEIV-RKIT------------ATETTEMEHKGKIQERVVDASELDDDGYYAITERKY 119 (283)
Q Consensus 60 v~~g~~v~l~C~~~g~~~i~-~~~~------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 119 (283)
+.+|+++.|.|.. +.|... .|.. ...++.. ....|.|.++.++|+|.|+|.+.+.
T Consensus 8 ~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~----~~~~L~I~~~~~~DsG~Y~C~a~~~ 75 (91)
T cd05871 8 GVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH----TERGLLLRSLQRSDAGVYTCTAVEH 75 (91)
T ss_pred EecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE----ecCeEEEeeCChhHCEEEEEEEEcc
Confidence 4567899999986 455222 3322 1122222 2245999999999999999999753
No 276
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.90 E-value=0.0002 Score=48.38 Aligned_cols=74 Identities=12% Similarity=0.196 Sum_probs=48.3
Q ss_pred cEEEEEEEeeec-CCEEEEEeCCE----ecC-----------CC--CCeEEE-EeCCEEEEEEcCCCCCCCEEEEEEEE-
Q psy14060 150 QARFEVEFDGDP-LPTIKWFREDF----PIT-----------SS--PDFQIH-TFSTKSILIMRQVFMEDSGVFAVIAE- 209 (283)
Q Consensus 150 ~v~l~C~~~g~p-~~~~~W~k~~~----~~~-----------~~--~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~- 209 (283)
+++|.|.....+ ...+.|.|... .+. .. .+..+. ......+|.|.+++.+|.|.|.|.+.
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~t 81 (96)
T cd05887 2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVT 81 (96)
T ss_pred CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEe
Confidence 688999986432 24689987421 111 00 122221 11224589999999999999999964
Q ss_pred eCCceeEEEEEEEE
Q psy14060 210 NRGGKAKCSANLVV 223 (283)
Q Consensus 210 n~~g~~~~~~~l~v 223 (283)
.+.|...++..|.|
T Consensus 82 fP~G~~~~~~~l~~ 95 (96)
T cd05887 82 FPLGNTQSSTTVTV 95 (96)
T ss_pred CCCCCeeEEEEEEE
Confidence 56788888888776
No 277
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=97.85 E-value=0.00011 Score=50.41 Aligned_cols=28 Identities=11% Similarity=0.014 Sum_probs=24.4
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 95 KIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
+..+|.|.+++.+|+|.|+|.+.+..+.
T Consensus 63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 90 (100)
T cd05713 63 GSVALRIHNVRASDEGLYTCFFQSDGFY 90 (100)
T ss_pred CcEEEEEEcCChhhCEEEEEEEecCCcE
Confidence 5689999999999999999999876553
No 278
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.85 E-value=8.9e-05 Score=51.78 Aligned_cols=61 Identities=8% Similarity=0.091 Sum_probs=41.3
Q ss_pred eeeecCcEEEEEEEccCc-cce--E--------Eee-------------cCCCEEEEEcC-CEEEEEEccCCCCCCeEEE
Q psy14060 59 EIHTAKSQQVQKEKKGDK-EIV--R--------KIT-------------ATETTEMEHKG-KIQERVVDASELDDDGYYA 113 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~-~i~--~--------~~~-------------~~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~ 113 (283)
.+.+|++++|.|.+.+.. .+. + .|. ...++...... ....|.|.+++.+|+|.|.
T Consensus 9 ~v~~G~~v~l~C~~~~~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~ 88 (110)
T cd05899 9 IKGRGQSVTLRCSQTSGHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAVYL 88 (110)
T ss_pred EEcCCCcEEEEEEECCCCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEEEE
Confidence 366788999999998722 222 1 110 02344443332 5688999999999999999
Q ss_pred EEEEec
Q psy14060 114 ITERKY 119 (283)
Q Consensus 114 C~a~n~ 119 (283)
|.+.+.
T Consensus 89 Ca~~~~ 94 (110)
T cd05899 89 CASSLG 94 (110)
T ss_pred EEeeCC
Confidence 988754
No 279
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.82 E-value=3.8e-05 Score=50.57 Aligned_cols=56 Identities=7% Similarity=0.101 Sum_probs=39.7
Q ss_pred eeeecCcEEEEEEEccCc-cce-----EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060 59 EIHTAKSQQVQKEKKGDK-EIV-----RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERK 118 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~-~i~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n 118 (283)
.+..|+++.|.|...+.. .+. ..+....++.... ..|.|.+++.+|+|.|.|.+.-
T Consensus 7 tv~~g~~v~L~C~~~s~~A~v~W~~ng~~l~~~~r~~~~~----~GLlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 7 TVAPGADVVLPCQLRSNLASPVWLFNGTPLNAQFSYRVGT----DGLLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred EEecCCCEEEECCCCCCCccEEEEECCcccCCCcceEEeC----CCCEEEECCHhhCEEEEEEEec
Confidence 477888999999998776 443 2333334444432 2377999999999999998763
No 280
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.81 E-value=0.00014 Score=51.38 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=41.3
Q ss_pred eeecCcEEEEEEEcc--Cc--cce--E--------Ee--------------ecCCCEEEEEcC--CEEEEEEccCCCCCC
Q psy14060 60 IHTAKSQQVQKEKKG--DK--EIV--R--------KI--------------TATETTEMEHKG--KIQERVVDASELDDD 109 (283)
Q Consensus 60 v~~g~~v~l~C~~~g--~~--~i~--~--------~~--------------~~~~~~~~~~~~--~~~~L~i~~~~~~D~ 109 (283)
+.+|+.++|.|.+.+ .+ .+. + .+ ....++.+.... ....|+|.+++.+|+
T Consensus 10 ~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds 89 (116)
T cd04982 10 REESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKEDS 89 (116)
T ss_pred eCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHHC
Confidence 556889999999876 33 222 1 00 013456665554 678999999999999
Q ss_pred eEEEEEEEe
Q psy14060 110 GYYAITERK 118 (283)
Q Consensus 110 G~Y~C~a~n 118 (283)
|.|.|.+..
T Consensus 90 g~Y~C~~~~ 98 (116)
T cd04982 90 ATYYCAYWE 98 (116)
T ss_pred EEEEEEEec
Confidence 999998754
No 281
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.77 E-value=0.00043 Score=44.59 Aligned_cols=63 Identities=21% Similarity=0.261 Sum_probs=41.0
Q ss_pred cEEEEEEEeee-cC-CEEEEEeCCEecCCCCC-eEEEE--eCC---EEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060 150 QARFEVEFDGD-PL-PTIKWFREDFPITSSPD-FQIHT--FST---KSILIMRQVFMEDSGVFAVIAENRG 212 (283)
Q Consensus 150 ~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~-~~~~~--~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~ 212 (283)
.++|.|.+.|. |. ..+.|+|+|..+..... ..... .+. .+.|.+......+...|+|.+.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 36899999986 55 58999999987543211 11111 111 2356666666677789999998754
No 282
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.73 E-value=0.0002 Score=50.41 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=24.5
Q ss_pred CCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 94 GKIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 94 ~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
.+..+|.|.+++.+|+|.|+|.+.|...
T Consensus 77 ~~daSI~I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 77 RKDGSIVIHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred cCeeEEEEccCCcccCEEEEEEEEcCCC
Confidence 3568999999999999999999988754
No 283
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.70 E-value=0.00022 Score=48.82 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=45.6
Q ss_pred CCceeecCCCcEEEEEEEeee-c-CCEEEEEeCCEecCCCCC-eEEEE--eCC---EEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060 140 IQPCRAFEQDQARFEVEFDGD-P-LPTIKWFREDFPITSSPD-FQIHT--FST---KSILIMRQVFMEDSGVFAVIAENR 211 (283)
Q Consensus 140 ~~~~~~~~g~~v~l~C~~~g~-p-~~~~~W~k~~~~~~~~~~-~~~~~--~~~---~~~l~i~~~~~~d~G~Y~C~a~n~ 211 (283)
+.......++.++|.|.+.|. | ...+.|+++|..+..... ..... ++. .+.|.+......+...|+|.+.+.
T Consensus 9 p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~ 88 (100)
T cd07699 9 PSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHE 88 (100)
T ss_pred CCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEec
Confidence 333345567789999999984 5 458999999998753211 01111 111 224555554444567999999876
Q ss_pred C
Q psy14060 212 G 212 (283)
Q Consensus 212 ~ 212 (283)
.
T Consensus 89 ~ 89 (100)
T cd07699 89 G 89 (100)
T ss_pred C
Confidence 5
No 284
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.70 E-value=0.00038 Score=46.47 Aligned_cols=67 Identities=16% Similarity=0.259 Sum_probs=42.8
Q ss_pred CCcEEEEEEEe-eecCCEEEEEeCCEecCCCCCeEEEEe-CC----EEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060 148 QDQARFEVEFD-GDPLPTIKWFREDFPITSSPDFQIHTF-ST----KSILIMRQVFMEDSGVFAVIAENRGGK 214 (283)
Q Consensus 148 g~~v~l~C~~~-g~p~~~~~W~k~~~~~~~~~~~~~~~~-~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 214 (283)
|+.+.+.|.+. ++|.+.++|+.++..+........... .. .+.|.+..-...+...++|.+.+..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 67999999875 578899999999887621110111111 11 235777655556677999999987543
No 285
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.69 E-value=0.00025 Score=46.18 Aligned_cols=58 Identities=14% Similarity=0.249 Sum_probs=38.7
Q ss_pred cEEEEEEEeeecCC--EEEEEeCCE--e---cC-------------CCCCeEEEEe--CCEEEEEEcCCCCCCCEEEEEE
Q psy14060 150 QARFEVEFDGDPLP--TIKWFREDF--P---IT-------------SSPDFQIHTF--STKSILIMRQVFMEDSGVFAVI 207 (283)
Q Consensus 150 ~v~l~C~~~g~p~~--~~~W~k~~~--~---~~-------------~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~ 207 (283)
++.|.|.+.....+ .+.|++... . +. ...++.+... ....+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 46899998764443 789988541 0 00 0123333333 4557899999999999999996
No 286
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=97.69 E-value=8.2e-05 Score=50.54 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=23.7
Q ss_pred EEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 96 IQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 96 ~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
...|.|.++..+|+|.|+|++.|....
T Consensus 69 ~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C 95 (104)
T cd05896 69 EDSIWFRPAELQDSGLYTCVLRNSTYC 95 (104)
T ss_pred CCEEEEEeCChhhCeEEEEEECCCCcc
Confidence 457899999999999999999998753
No 287
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.67 E-value=0.00016 Score=48.66 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=22.9
Q ss_pred EEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 96 IQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 96 ~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
..+|.|.+++.+|+|.|+|.+....+
T Consensus 56 ~~sL~I~~l~~~DsG~Y~c~v~~~~~ 81 (92)
T cd05741 56 NGSLLIQNLTKEDSGTYTLQIISTNG 81 (92)
T ss_pred CceEEEccCCchhcEEEEEEEEcCCC
Confidence 37899999999999999998877654
No 288
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.64 E-value=0.00023 Score=49.44 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=21.1
Q ss_pred CCEEEEEEccCCCCCCeEEEEEEE
Q psy14060 94 GKIQERVVDASELDDDGYYAITER 117 (283)
Q Consensus 94 ~~~~~L~i~~~~~~D~G~Y~C~a~ 117 (283)
+....|+|.++..+|+|.|.|...
T Consensus 69 ~~~~~L~I~~~~~~Dsg~YyCa~~ 92 (107)
T cd07700 69 SSRYRLHINRVKPEDSGTYFCMTV 92 (107)
T ss_pred CCEEEEEECCCCHHHCEEEEEeEc
Confidence 446789999999999999999864
No 289
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.62 E-value=0.0002 Score=50.00 Aligned_cols=34 Identities=9% Similarity=0.016 Sum_probs=27.0
Q ss_pred CEEEEE---cCCEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060 87 TTEMEH---KGKIQERVVDASELDDDGYYAITERKYY 120 (283)
Q Consensus 87 ~~~~~~---~~~~~~L~i~~~~~~D~G~Y~C~a~n~~ 120 (283)
|+.+.. ..+..+|+|.+++.+|+|.|+|.+.+..
T Consensus 61 R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~ 97 (112)
T cd05900 61 RVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHGI 97 (112)
T ss_pred eEEecccCCCCCCcEEEEeecccccCEEEEEEEecCC
Confidence 555543 3367899999999999999999887653
No 290
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.61 E-value=0.00094 Score=45.08 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=41.3
Q ss_pred cCCCcEEEEEEEeee-cCC-EEEEEeCCEecCCCC-CeEEEEeC--C---EEEEEEcCCCCCCCEEEEEEEEeCCc
Q psy14060 146 FEQDQARFEVEFDGD-PLP-TIKWFREDFPITSSP-DFQIHTFS--T---KSILIMRQVFMEDSGVFAVIAENRGG 213 (283)
Q Consensus 146 ~~g~~v~l~C~~~g~-p~~-~~~W~k~~~~~~~~~-~~~~~~~~--~---~~~l~i~~~~~~d~G~Y~C~a~n~~g 213 (283)
..|+.++|.|.+.|. |.. .++|+++|..+.... .......+ . .+.|.+. .++...|+|.+.+...
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~l 84 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETT---PSRGDTYTCVVEHSSL 84 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEeCCC
Confidence 357889999999995 543 789999999876531 11111111 1 1234443 3456699999988653
No 291
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.61 E-value=0.00021 Score=50.36 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=23.6
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 95 KIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
+..+|.|.+++.+|+|.|.|.+.|...
T Consensus 77 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 77 RDASILIWQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred CceEEEEeeCChhhCEEEEEEEEeCCC
Confidence 467899999999999999999887654
No 292
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=97.59 E-value=0.00019 Score=49.44 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=22.7
Q ss_pred EEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 96 IQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 96 ~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
..+|.|.+++.+|+|.|.|.+.+...
T Consensus 69 ngSL~I~~v~~~D~G~Y~~~v~~~~~ 94 (105)
T cd05774 69 NGSLLIQNVTQKDTGFYTLQTITTNF 94 (105)
T ss_pred CCcEEEecCCcccCEEEEEEEEeCCc
Confidence 45899999999999999999887653
No 293
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.59 E-value=0.00024 Score=50.15 Aligned_cols=59 Identities=10% Similarity=0.090 Sum_probs=41.1
Q ss_pred eeecCcEEEEEEEccCc---cce----------EEe---------ecCCCEEEEE--cCCEEEEEEccCCCCCCeEEEEE
Q psy14060 60 IHTAKSQQVQKEKKGDK---EIV----------RKI---------TATETTEMEH--KGKIQERVVDASELDDDGYYAIT 115 (283)
Q Consensus 60 v~~g~~v~l~C~~~g~~---~i~----------~~~---------~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~ 115 (283)
+.+|++|+|.|...... .+. ..+ ...+|+.+.. ..+...|.|.+++.+|+|.|.|.
T Consensus 11 ~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~ 90 (116)
T cd07706 11 VQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFCA 90 (116)
T ss_pred EcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEE
Confidence 66788999999987532 121 011 1134565542 34678999999999999999998
Q ss_pred EEe
Q psy14060 116 ERK 118 (283)
Q Consensus 116 a~n 118 (283)
+..
T Consensus 91 ~~~ 93 (116)
T cd07706 91 LST 93 (116)
T ss_pred EEC
Confidence 764
No 294
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.58 E-value=0.0012 Score=44.53 Aligned_cols=69 Identities=12% Similarity=0.106 Sum_probs=42.9
Q ss_pred cCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCC-Ce-EEEEeCC----EEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060 146 FEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSP-DF-QIHTFST----KSILIMRQVFMEDSGVFAVIAENRGGK 214 (283)
Q Consensus 146 ~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~-~~-~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 214 (283)
.....++|.|.+.|. |. ..++|+++|..+.... .. .....+. .+.|.+......+...|+|.+.+....
T Consensus 12 ~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 12 GTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 345678999999984 54 5799999998863321 10 1111111 224555544444667999999886543
No 295
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.55 E-value=0.00041 Score=48.95 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.3
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 95 KIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
+..+|.|.+++.+|+|.|.|.+.|...
T Consensus 78 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 78 KDASIVIHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred CeeEEEEeeCCcccCEEEEEEEEeCCC
Confidence 357899999999999999999887643
No 296
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.55 E-value=0.00033 Score=47.73 Aligned_cols=60 Identities=10% Similarity=0.018 Sum_probs=40.5
Q ss_pred eeecCcEEEEEEEccCc---cce----------EEe--------ecCCCEEEE--EcCCEEEEEEccCCCCCCeEEEEEE
Q psy14060 60 IHTAKSQQVQKEKKGDK---EIV----------RKI--------TATETTEME--HKGKIQERVVDASELDDDGYYAITE 116 (283)
Q Consensus 60 v~~g~~v~l~C~~~g~~---~i~----------~~~--------~~~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a 116 (283)
+.+|++|+|.|...... .+. ..+ ....++.+. ...+...|.|.+++.+|+|.|.|.+
T Consensus 4 ~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~ 83 (98)
T cd05716 4 GELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGV 83 (98)
T ss_pred EEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEc
Confidence 56788999999876522 221 111 122345443 2346789999999999999999977
Q ss_pred Eec
Q psy14060 117 RKY 119 (283)
Q Consensus 117 ~n~ 119 (283)
...
T Consensus 84 ~~~ 86 (98)
T cd05716 84 GDD 86 (98)
T ss_pred ccC
Confidence 654
No 297
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.54 E-value=0.00023 Score=48.02 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=38.2
Q ss_pred eeecCcEEEEEEE-ccC------ccce-----EEeecCC-CEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 60 IHTAKSQQVQKEK-KGD------KEIV-----RKITATE-TTEMEHKGKIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 60 v~~g~~v~l~C~~-~g~------~~i~-----~~~~~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
+.+|.+..|.|.- .+. +++. ..+.... ++.. .. +...|.|.++..+|+|.|+|.+.+..+
T Consensus 7 ~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~-~~-~~~~L~I~~v~~~D~G~YtC~~~~~~~ 79 (95)
T cd05897 7 LFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYS-LK-GSTYLHIIDVSLNDSGYYTCKLQFTHE 79 (95)
T ss_pred eccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEe-cC-CCCEEEEEEcChhhCEEEEEEEEEeeC
Confidence 5567789999963 222 2343 3333222 2221 11 234699999999999999999998865
No 298
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.54 E-value=0.00031 Score=48.63 Aligned_cols=27 Identities=19% Similarity=0.101 Sum_probs=23.5
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 95 KIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
+..+|.|.+++.+|+|.|.|.+.+..+
T Consensus 66 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~ 92 (106)
T cd05877 66 LDASLVITDLRLEDYGRYRCEVIDGLE 92 (106)
T ss_pred CcEEEEEccCChHHCEEEEEEEEeccc
Confidence 467899999999999999999877654
No 299
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.53 E-value=0.00057 Score=46.90 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=42.8
Q ss_pred eeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCC--eEEEEe----CC---EEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060 143 CRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPD--FQIHTF----ST---KSILIMRQVFMEDSGVFAVIAENR 211 (283)
Q Consensus 143 ~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~--~~~~~~----~~---~~~l~i~~~~~~d~G~Y~C~a~n~ 211 (283)
..+..+..++|.|.+.|. |. ..++|++++..+..... ...... +. .+.|.+..-...+...|+|.+.+.
T Consensus 11 ~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~ 90 (102)
T cd05768 11 EELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE 90 (102)
T ss_pred HHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence 344557789999999995 54 36899999988754211 111111 11 224555443334566899999876
Q ss_pred C
Q psy14060 212 G 212 (283)
Q Consensus 212 ~ 212 (283)
.
T Consensus 91 ~ 91 (102)
T cd05768 91 A 91 (102)
T ss_pred C
Confidence 4
No 300
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.52 E-value=0.00025 Score=48.24 Aligned_cols=30 Identities=10% Similarity=0.100 Sum_probs=25.2
Q ss_pred EcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 92 HKGKIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 92 ~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
......+|+|.+++.+|+|.|.|.+.+..+
T Consensus 56 ~~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~ 85 (97)
T cd05775 56 FSQNDYSLQISNLKMEDAGSYRAEINTKNG 85 (97)
T ss_pred ecCCceeEEECCCchHHCEEEEEEEEcCCC
Confidence 344578999999999999999998877654
No 301
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.50 E-value=0.00042 Score=47.79 Aligned_cols=32 Identities=9% Similarity=0.129 Sum_probs=25.1
Q ss_pred CEEEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060 87 TTEMEHKGKIQERVVDASELDDDGYYAITERK 118 (283)
Q Consensus 87 ~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n 118 (283)
++..+.......|.|.+++.+|+|.|.|...+
T Consensus 59 rf~~~~~~~~~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 59 RFSGSRSSNSFVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred eEEEEecCCEEEEEECCCCHHHCEEEEEEEcc
Confidence 34444445778899999999999999997653
No 302
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.49 E-value=0.0008 Score=45.75 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=21.5
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEe
Q psy14060 95 KIQERVVDASELDDDGYYAITERK 118 (283)
Q Consensus 95 ~~~~L~i~~~~~~D~G~Y~C~a~n 118 (283)
...+|.|.+++.+|+|.|.|.+..
T Consensus 60 ~~~sL~I~~v~~~D~G~Y~C~v~~ 83 (98)
T cd05718 60 EDATISISNLRLEDEGNYICEFAT 83 (98)
T ss_pred CceEEEEccCCcccCEEEEEEEEe
Confidence 467999999999999999998764
No 303
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=97.49 E-value=0.00075 Score=45.73 Aligned_cols=65 Identities=11% Similarity=0.046 Sum_probs=45.9
Q ss_pred eeeecCcEEEEEEEccCccce--EEeec------C--CCEEEEEcC---CEEEEEEccCCCCCCeEEEEEEEecceee
Q psy14060 59 EIHTAKSQQVQKEKKGDKEIV--RKITA------T--ETTEMEHKG---KIQERVVDASELDDDGYYAITERKYYALS 123 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~~~i~--~~~~~------~--~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~ 123 (283)
.|.+||.+.|.|.++..|.+. .|... . +.......+ -...|.|.+++.+|+|.|+|.+.|.....
T Consensus 14 ~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 14 FVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred EEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 478899999999999999543 33322 1 111111111 34789999999999999999999987643
No 304
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.46 E-value=0.00044 Score=48.23 Aligned_cols=27 Identities=11% Similarity=-0.013 Sum_probs=23.4
Q ss_pred CCEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060 94 GKIQERVVDASELDDDGYYAITERKYY 120 (283)
Q Consensus 94 ~~~~~L~i~~~~~~D~G~Y~C~a~n~~ 120 (283)
.+..+|+|.+++.+|+|.|.|.+....
T Consensus 69 ~~~asL~I~~l~~sD~G~Y~C~v~~~~ 95 (110)
T cd05878 69 RGDASLEISRLRSSDSGVYRCEVMHGI 95 (110)
T ss_pred CCcEEEEECCCChhhCEEEEEEEEeCC
Confidence 457889999999999999999887653
No 305
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.44 E-value=0.0025 Score=43.13 Aligned_cols=70 Identities=13% Similarity=0.182 Sum_probs=42.0
Q ss_pred CcEEEEEEEeee-cCCEEEEEeCCE----ec-----------CCC--CCeEEEE-eCCEEEEEEcCCCCCCCEEEEEEEE
Q psy14060 149 DQARFEVEFDGD-PLPTIKWFREDF----PI-----------TSS--PDFQIHT-FSTKSILIMRQVFMEDSGVFAVIAE 209 (283)
Q Consensus 149 ~~v~l~C~~~g~-p~~~~~W~k~~~----~~-----------~~~--~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~ 209 (283)
+.++|.|..... ....++|.|... .+ ... .+..+.. .....+|.|.+++.+|.|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 368899988542 235678987432 11 011 1222211 1124689999999999999999986
Q ss_pred eC-CceeEEE
Q psy14060 210 NR-GGKAKCS 218 (283)
Q Consensus 210 n~-~g~~~~~ 218 (283)
.. .|..+..
T Consensus 81 t~P~g~~~~~ 90 (96)
T cd05889 81 TYPQGSWEKV 90 (96)
T ss_pred eCCCCCeEEE
Confidence 43 4554433
No 306
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.41 E-value=0.0032 Score=42.45 Aligned_cols=63 Identities=17% Similarity=0.292 Sum_probs=39.5
Q ss_pred CCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCC-eEEEEe--CC---EEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060 147 EQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPD-FQIHTF--ST---KSILIMRQVFMEDSGVFAVIAENRG 212 (283)
Q Consensus 147 ~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~-~~~~~~--~~---~~~l~i~~~~~~d~G~Y~C~a~n~~ 212 (283)
.+...+|.|.+.|. |. ..++|+++|..+..... ...... +. .+.|.+. +.+...|+|.+.+..
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~ 84 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG 84 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence 35568999999994 54 57899999998754311 111111 11 1235444 345669999998764
No 307
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.40 E-value=0.0046 Score=41.52 Aligned_cols=67 Identities=10% Similarity=0.070 Sum_probs=40.3
Q ss_pred cCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCCeEEEEeC--CEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060 146 FEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPDFQIHTFS--TKSILIMRQVFMEDSGVFAVIAENRG 212 (283)
Q Consensus 146 ~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~ 212 (283)
..|...+|.|.+.|. |. ..++|+|||..+.......+...+ .........+..++...|+|.+.+..
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 346667899999995 43 578999999987621111122221 11111122234567778999998754
No 308
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.39 E-value=0.0015 Score=44.19 Aligned_cols=73 Identities=12% Similarity=0.087 Sum_probs=41.9
Q ss_pred CCceeecCCCcEEEEEEEeee--cC-CEEEEEeCCEecCCC--CCeEEEEeCC---EEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060 140 IQPCRAFEQDQARFEVEFDGD--PL-PTIKWFREDFPITSS--PDFQIHTFST---KSILIMRQVFMEDSGVFAVIAENR 211 (283)
Q Consensus 140 ~~~~~~~~g~~v~l~C~~~g~--p~-~~~~W~k~~~~~~~~--~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~ 211 (283)
+....+..++.++|.|.+.|. |. ..++|+|+++..... .......++. .+.|.+..-...+.-.|+|.+.+.
T Consensus 6 Ps~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~ 85 (96)
T cd07696 6 PSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHP 85 (96)
T ss_pred cCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECC
Confidence 344456668899999999987 43 478999987533210 0000111111 123444443333455899999876
Q ss_pred C
Q psy14060 212 G 212 (283)
Q Consensus 212 ~ 212 (283)
.
T Consensus 86 ~ 86 (96)
T cd07696 86 D 86 (96)
T ss_pred C
Confidence 5
No 309
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=97.39 E-value=0.00094 Score=46.20 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=24.2
Q ss_pred CCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 94 GKIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 94 ~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
.+..+|.|.+++.+|+|.|.|.+.+..+
T Consensus 65 ~~~~sL~I~~v~~sD~G~Y~C~v~~~~~ 92 (106)
T cd05714 65 PGDASLVITDLRLEDSGRYRCEVIDGIE 92 (106)
T ss_pred CCcceEEECCCCHHHCEEEEEEEEcCCC
Confidence 3578999999999999999999887643
No 310
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.38 E-value=0.0011 Score=46.06 Aligned_cols=61 Identities=8% Similarity=0.076 Sum_probs=40.4
Q ss_pred eeeecCcEEEEEEEc-cCc--cce----------EEe--------------ecCCCEEEEEc--CCEEEEEEccCCCCCC
Q psy14060 59 EIHTAKSQQVQKEKK-GDK--EIV----------RKI--------------TATETTEMEHK--GKIQERVVDASELDDD 109 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~-g~~--~i~----------~~~--------------~~~~~~~~~~~--~~~~~L~i~~~~~~D~ 109 (283)
.+.+|+++.|.|... ... .+. ..+ ....++.+... ....+|.|.+++.+|+
T Consensus 12 ~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~Ds 91 (114)
T PF07686_consen 12 TVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDS 91 (114)
T ss_dssp EEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGE
T ss_pred EEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcC
Confidence 356678899999998 222 221 111 11233333332 3478999999999999
Q ss_pred eEEEEEEEec
Q psy14060 110 GYYAITERKY 119 (283)
Q Consensus 110 G~Y~C~a~n~ 119 (283)
|.|.|.....
T Consensus 92 G~Y~C~v~~~ 101 (114)
T PF07686_consen 92 GTYFCQVSTS 101 (114)
T ss_dssp EEEEEEEEES
T ss_pred EEEEEEEEEC
Confidence 9999988766
No 311
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.31 E-value=0.00066 Score=46.18 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=21.6
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEec
Q psy14060 95 KIQERVVDASELDDDGYYAITERKY 119 (283)
Q Consensus 95 ~~~~L~i~~~~~~D~G~Y~C~a~n~ 119 (283)
...+|.|.+++.+|+|.|.|.....
T Consensus 59 ~~~sL~I~nv~~~D~G~Y~C~~~~~ 83 (97)
T cd05846 59 NSTSITIWNVTLEDEGCYKCIFNTF 83 (97)
T ss_pred CccEEEEeCCceeeeEEEEEEEEeC
Confidence 5688999999999999999976543
No 312
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.30 E-value=0.00052 Score=42.08 Aligned_cols=53 Identities=21% Similarity=0.360 Sum_probs=35.6
Q ss_pred ecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeC
Q psy14060 145 AFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR 211 (283)
Q Consensus 145 ~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 211 (283)
...|.+|+|+|+..+ ..+.|++++..+..... .+.+.+-. +++|.|.|.+.+.
T Consensus 4 sisGTtVtlTCP~~~---~~i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 4 SISGTTVTVTCPLSG---DDIKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EEeccEEEEECCCCC---CCceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCCC
Confidence 356889999998653 22999999866554222 13333333 8899999998543
No 313
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.28 E-value=0.022 Score=48.67 Aligned_cols=114 Identities=10% Similarity=0.046 Sum_probs=70.0
Q ss_pred EEEEEEccCCCCCCeEEEEEEEecce--e-eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeee-cC--CEEEEEe
Q psy14060 96 IQERVVDASELDDDGYYAITERKYYA--L-SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL--PTIKWFR 169 (283)
Q Consensus 96 ~~~L~i~~~~~~D~G~Y~C~a~n~~~--~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~--~~~~W~k 169 (283)
...|.|..++..++|.|+-...+..+ . .....+....+|.+.+. ..-+..|+...-.|.+..+ |. ..+.||+
T Consensus 197 ~~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~--~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~ 274 (486)
T PHA03273 197 KFPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLS--VHPSLKGENYRAVCVVASYFPHSSVKLRWYK 274 (486)
T ss_pred ccceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCccccc--CCccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 46699999999999999976544322 1 11222333456665443 3346789999999999876 43 3689999
Q ss_pred CCEecCCCCC----eEEEEeCC---EEEEEEcCCCC-CCCEEEEEEEEeC
Q psy14060 170 EDFPITSSPD----FQIHTFST---KSILIMRQVFM-EDSGVFAVIAENR 211 (283)
Q Consensus 170 ~~~~~~~~~~----~~~~~~~~---~~~l~i~~~~~-~d~G~Y~C~a~n~ 211 (283)
|+.++..... ......+. .++|.+..... ...-..+|.+.-.
T Consensus 275 dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~ 324 (486)
T PHA03273 275 NAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWY 324 (486)
T ss_pred CCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEc
Confidence 9999873222 11111222 33555554332 3344789987543
No 314
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.23 E-value=0.0036 Score=43.84 Aligned_cols=77 Identities=16% Similarity=0.134 Sum_probs=47.1
Q ss_pred CCceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCC---eEEEEe-C---CEEEEEEcCCCCCC-CEEEEEEEE
Q psy14060 140 IQPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPD---FQIHTF-S---TKSILIMRQVFMED-SGVFAVIAE 209 (283)
Q Consensus 140 ~~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~---~~~~~~-~---~~~~l~i~~~~~~d-~G~Y~C~a~ 209 (283)
+....+..+..++|.|.+.|. |. ..++|++|+..+..... ...... + ..+.|.+......+ ...|+|.+.
T Consensus 10 ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~ 89 (115)
T cd05769 10 PSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQ 89 (115)
T ss_pred cChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEE
Confidence 333344456789999999985 55 48999999988764321 111111 1 12346666544433 568999998
Q ss_pred eCCceeE
Q psy14060 210 NRGGKAK 216 (283)
Q Consensus 210 n~~g~~~ 216 (283)
+......
T Consensus 90 H~g~~~~ 96 (115)
T cd05769 90 FYGGTDT 96 (115)
T ss_pred EeCCccc
Confidence 8754443
No 315
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.19 E-value=0.016 Score=49.82 Aligned_cols=115 Identities=10% Similarity=-0.075 Sum_probs=69.3
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEecc-e---eeeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeee-cC--CEEEE
Q psy14060 95 KIQERVVDASELDDDGYYAITERKYY-A---LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL--PTIKW 167 (283)
Q Consensus 95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~-~---~~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~--~~~~W 167 (283)
+...|.|.+++..++|.|+-...+.. + ......+....+|.+.+. ..-+..|+...-.|.+..+ |. ..+.|
T Consensus 287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~--p~PVL~Ge~YkAtC~vA~YYPp~SvrlrW 364 (566)
T PHA03269 287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVI--GDPVLLGNPYAAYCKVNKYYPPHSVIVKW 364 (566)
T ss_pred CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCcccc--CCccccCCCceEEEEeeeecCCCceEEEE
Confidence 45679999999999999997654322 1 112223444456654433 3346789999999999876 43 36899
Q ss_pred EeCCEecCCCC---CeEEEEeCC---EEEEEEcCCCCCC--CEEEEEEEEeC
Q psy14060 168 FREDFPITSSP---DFQIHTFST---KSILIMRQVFMED--SGVFAVIAENR 211 (283)
Q Consensus 168 ~k~~~~~~~~~---~~~~~~~~~---~~~l~i~~~~~~d--~G~Y~C~a~n~ 211 (283)
|+|+..+.... .+....++. .++|.+......| --..+|.+.-.
T Consensus 365 f~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~ 416 (566)
T PHA03269 365 TSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWI 416 (566)
T ss_pred EeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEc
Confidence 99998887422 112222222 3345553322222 34679986543
No 316
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.18 E-value=0.0054 Score=41.43 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=39.2
Q ss_pred CcEEEEEEE-eeecCCEEEEEeCCEecCCCCCeEE-E-EeCC---EEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060 149 DQARFEVEF-DGDPLPTIKWFREDFPITSSPDFQI-H-TFST---KSILIMRQVFMEDSGVFAVIAENRGGK 214 (283)
Q Consensus 149 ~~v~l~C~~-~g~p~~~~~W~k~~~~~~~~~~~~~-~-~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 214 (283)
....+.|.+ .|+|.+.|+|+++. ........ . ..+. .+.|.+......+...|+|.+.|..-.
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ 84 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 456789998 57899999999971 11111111 1 1111 235666655556667999999987644
No 317
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.18 E-value=0.0019 Score=45.71 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=26.0
Q ss_pred CCEEE--EEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060 86 ETTEM--EHKGKIQERVVDASELDDDGYYAITERKY 119 (283)
Q Consensus 86 ~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 119 (283)
.|+.+ +...+..+|.|.+++.+|+|.|.|.....
T Consensus 67 gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 67 GRFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccEEEecCCCCCEEEEEEccCChhhCeEEEEEEEcC
Confidence 34444 23456789999999999999999977653
No 318
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.18 E-value=0.0021 Score=43.47 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=21.6
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEec
Q psy14060 95 KIQERVVDASELDDDGYYAITERKY 119 (283)
Q Consensus 95 ~~~~L~i~~~~~~D~G~Y~C~a~n~ 119 (283)
...+|.|.|++.+|+|.|+|...+-
T Consensus 58 ~d~sl~i~nv~~~D~G~Y~C~v~tf 82 (96)
T cd05887 58 LDATIMLENVGFSDIGVYICKAVTF 82 (96)
T ss_pred CccEEEEeCCCccccEEEEEEEEeC
Confidence 4679999999999999999986544
No 319
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.12 E-value=0.0012 Score=44.92 Aligned_cols=40 Identities=10% Similarity=0.069 Sum_probs=31.2
Q ss_pred ecCCceEEcCCCeEEEEEEEEe-eCCCe--eEEeeCCEEecCC
Q psy14060 241 TTISSAVINVGQLARFDAKISA-TKPLD--VYWLKVSSLSDVK 280 (283)
Q Consensus 241 ~~~~~~~v~~g~~v~L~C~~~g-~p~~~--v~W~~~g~~l~~~ 280 (283)
..+.+..+.+|+.++|.|.+.| .|.+. |.||++++.+..+
T Consensus 6 l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~ 48 (100)
T cd05755 6 LSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQ 48 (100)
T ss_pred EecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccc
Confidence 3344455789999999999986 56565 7999999998654
No 320
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.10 E-value=0.033 Score=47.23 Aligned_cols=80 Identities=14% Similarity=0.201 Sum_probs=56.4
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEeccee---eeeeccCCCCCCeEEecCCceeecCCCcEEEEEEEeee-cC--CEEEEE
Q psy14060 95 KIQERVVDASELDDDGYYAITERKYYAL---SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL--PTIKWF 168 (283)
Q Consensus 95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~--~~~~W~ 168 (283)
..+.|.|..++...+|.|+-...+..+. .....+....+|.+.+. ..-+..|+...-.|.+..+ |. ..+.||
T Consensus 180 p~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~--~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf 257 (466)
T PHA03270 180 PTQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIR--PHAVLEGEPFGATCVAANYYPGDRAAFRWF 257 (466)
T ss_pred CcceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCccccc--CCccccCCCceEEEEeeeecCCCceEEEEE
Confidence 3567999999999999999986554331 12233444556665443 3346789999999999876 43 368999
Q ss_pred eCCEecCC
Q psy14060 169 REDFPITS 176 (283)
Q Consensus 169 k~~~~~~~ 176 (283)
+|+..+..
T Consensus 258 ~ng~~V~~ 265 (466)
T PHA03270 258 EGGDEVFA 265 (466)
T ss_pred eCCccccC
Confidence 99998854
No 321
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.09 E-value=0.0041 Score=42.06 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=40.8
Q ss_pred CceeecCCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCCC-eEEEEeCCE----EEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060 141 QPCRAFEQDQARFEVEFDGD-PL-PTIKWFREDFPITSSPD-FQIHTFSTK----SILIMRQVFMEDSGVFAVIAENRG 212 (283)
Q Consensus 141 ~~~~~~~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~~-~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~ 212 (283)
....+..+..++|.|.+.|. |. ..++|+++|..+..+.. ......+.. +.|.+..-. ....|+|.+.+..
T Consensus 9 s~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 9 SKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred CHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 33344456678999999994 54 46899999988654311 111111221 234444322 2345999998754
No 322
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.08 E-value=0.049 Score=45.98 Aligned_cols=116 Identities=9% Similarity=0.064 Sum_probs=67.1
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEeccee---eee-eccCCCCCCeEEecCCceeecCCCcEEEEEEEeee-cC--CEEEE
Q psy14060 95 KIQERVVDASELDDDGYYAITERKYYAL---SDL-SEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGD-PL--PTIKW 167 (283)
Q Consensus 95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~~~---~~~-~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-p~--~~~~W 167 (283)
....|.|.++...|+|.|+-...+.... ... .......+|.+...+ ..+..|+...-.|.+..+ |. ..++|
T Consensus 205 ~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~SvrlrW 282 (490)
T PHA03271 205 NTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLA--PPVLSGENYKASCIVRHFYPPGSVYVSW 282 (490)
T ss_pred ceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEE
Confidence 4678999999999999665544443221 111 111223455444433 245689999999999876 43 36899
Q ss_pred EeCCEecCCCCC--eEE-EEe-----CCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060 168 FREDFPITSSPD--FQI-HTF-----STKSILIMRQVFMEDSGVFAVIAENRG 212 (283)
Q Consensus 168 ~k~~~~~~~~~~--~~~-~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 212 (283)
|+||..+..... ... ... ...++|.+.+......-..+|.+.-..
T Consensus 283 f~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~r 335 (490)
T PHA03271 283 RQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQ 335 (490)
T ss_pred EeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEcc
Confidence 999988754321 111 111 123345554433334448899875433
No 323
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.08 E-value=0.0037 Score=41.07 Aligned_cols=65 Identities=11% Similarity=0.147 Sum_probs=42.9
Q ss_pred CCCcEEEEEEEeee-cCC-EEEEEeCCEecCCCCCeE-EE-EeCCE----EEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060 147 EQDQARFEVEFDGD-PLP-TIKWFREDFPITSSPDFQ-IH-TFSTK----SILIMRQVFMEDSGVFAVIAENRGGK 214 (283)
Q Consensus 147 ~g~~v~l~C~~~g~-p~~-~~~W~k~~~~~~~~~~~~-~~-~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~ 214 (283)
.+..+.|.|.+.+. |.. .+.|++++..+....... .. ..+.. +.|.+. ..+...|+|.+.+....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 37889999999985 544 799999999876543221 11 12222 245555 55566899999887543
No 324
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.04 E-value=0.0067 Score=42.05 Aligned_cols=70 Identities=10% Similarity=0.098 Sum_probs=46.8
Q ss_pred cCCceeecCCCcEEEEEEEeeec--C-CEEEEEeCCE-ec--------------CCCCCeEEEE--eCCEEEEEEcCCCC
Q psy14060 139 KIQPCRAFEQDQARFEVEFDGDP--L-PTIKWFREDF-PI--------------TSSPDFQIHT--FSTKSILIMRQVFM 198 (283)
Q Consensus 139 ~~~~~~~~~g~~v~l~C~~~g~p--~-~~~~W~k~~~-~~--------------~~~~~~~~~~--~~~~~~l~i~~~~~ 198 (283)
.+....+..|..++|.|.++|.. . -.+.|+|... .+ ....++.+.. .....+|.|.++..
T Consensus 4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a 83 (115)
T cd05721 4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA 83 (115)
T ss_pred ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH
Confidence 44556778888999999997743 2 4678988521 11 0112222222 33456899999999
Q ss_pred CCCEEEEEEE
Q psy14060 199 EDSGVFAVIA 208 (283)
Q Consensus 199 ~d~G~Y~C~a 208 (283)
+|.+.|.|..
T Consensus 84 ~DTa~Y~Ca~ 93 (115)
T cd05721 84 NQTDIYFCKI 93 (115)
T ss_pred HHCeEEEEEe
Confidence 9999999975
No 325
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.04 E-value=0.001 Score=43.65 Aligned_cols=26 Identities=8% Similarity=0.312 Sum_probs=22.6
Q ss_pred EEEEEEEEe-eCCCeeEEeeCCEEecC
Q psy14060 254 ARFDAKISA-TKPLDVYWLKVSSLSDV 279 (283)
Q Consensus 254 v~L~C~~~g-~p~~~v~W~~~g~~l~~ 279 (283)
+.|.|.+.| +|.+.++|+++|+++..
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~ 28 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDG 28 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccC
Confidence 689999987 68889999999998764
No 326
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=96.96 E-value=0.00089 Score=43.50 Aligned_cols=26 Identities=4% Similarity=0.072 Sum_probs=22.4
Q ss_pred EEEEEEEE-eeCCCeeEEeeCCEEecC
Q psy14060 254 ARFDAKIS-ATKPLDVYWLKVSSLSDV 279 (283)
Q Consensus 254 v~L~C~~~-g~p~~~v~W~~~g~~l~~ 279 (283)
+.|+|... +.|.++|+||+||++|..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~ 28 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKG 28 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCC
Confidence 68999986 578889999999999954
No 327
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.90 E-value=0.0061 Score=37.73 Aligned_cols=49 Identities=10% Similarity=0.223 Sum_probs=35.9
Q ss_pred CCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060 148 QDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 210 (283)
Q Consensus 148 g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 210 (283)
.+.|.|.|.. ..+|.|++ |..+.... ..+|.+-.......|.|.|.+.+
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence 3578999965 25699999 55443221 23588888889999999998866
No 328
>KOG1480|consensus
Probab=96.85 E-value=0.00083 Score=60.42 Aligned_cols=164 Identities=15% Similarity=0.176 Sum_probs=96.2
Q ss_pred CCCceeeecCC-eeeecCcEEEEEEEccCccce-----EEeecCCCEEEEEc----C---CEEEEEEccCCCCCCe---E
Q psy14060 48 PEPSASGVHGK-EIHTAKSQQVQKEKKGDKEIV-----RKITATETTEMEHK----G---KIQERVVDASELDDDG---Y 111 (283)
Q Consensus 48 ~~p~~~~~~~~-~v~~g~~v~l~C~~~g~~~i~-----~~~~~~~~~~~~~~----~---~~~~L~i~~~~~~D~G---~ 111 (283)
..|+|...+.. .+..+..+.|.|.+...+.|. .++.......+... + ......|.....++.| .
T Consensus 23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d 102 (909)
T KOG1480|consen 23 DLPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPED 102 (909)
T ss_pred CcceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccc
Confidence 55666654444 345556799999997666544 22222221111100 0 1223444444444544 5
Q ss_pred EEEE--EEecceeeee--eccCC-CCCCeEEecCCceeecCCCcEEEEEEE-eeecCCEEEEEeCCEecCCCCCeEEEEe
Q psy14060 112 YAIT--ERKYYALSDL--SEQKP-AKPPVFTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSSPDFQIHTF 185 (283)
Q Consensus 112 Y~C~--a~n~~~~~~~--~~~~~-~~~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~~~W~k~~~~~~~~~~~~~~~~ 185 (283)
|.|. +....|.... ..+.. .....|...+....+..+..+.+.|.. .+.|...+.|++++..+.+..+......
T Consensus 103 ~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d 182 (909)
T KOG1480|consen 103 YWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASD 182 (909)
T ss_pred eeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhc
Confidence 7774 4433332111 11111 112234445556678888888898876 5677888999999988877444333333
Q ss_pred CCEEEEEEcCCCCCCCEEEEEEEEeCCce
Q psy14060 186 STKSILIMRQVFMEDSGVFAVIAENRGGK 214 (283)
Q Consensus 186 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 214 (283)
. .+.+..+...|.|+|+|++.|-.+.
T Consensus 183 ~---~li~~~arlsd~~nytc~a~ni~~~ 208 (909)
T KOG1480|consen 183 H---NLIISQARLSDSGNYTCEATNIVAK 208 (909)
T ss_pred C---Cccccchhhhhcccceeeeehhhcc
Confidence 3 4889999999999999999987655
No 329
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.84 E-value=0.011 Score=38.78 Aligned_cols=60 Identities=3% Similarity=-0.015 Sum_probs=43.8
Q ss_pred eeeecCcEEEEEEEccC--c--cceEEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060 59 EIHTAKSQQVQKEKKGD--K--EIVRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKY 119 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~g~--~--~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 119 (283)
.+..|++++|+|..... | .| +++............+..+|.+..+...|+|..+|.....
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i-~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKV-EWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccE-EEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEEEC
Confidence 47788999999999553 3 33 5665554433333346788999999999999999987544
No 330
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=96.83 E-value=0.0053 Score=46.17 Aligned_cols=58 Identities=12% Similarity=0.113 Sum_probs=38.0
Q ss_pred eeeecCcEEEEEEEc-cCc--cceEEee------------------cCCCEE-EEEcCCEEEEEEccCCCCCCeEEEEEE
Q psy14060 59 EIHTAKSQQVQKEKK-GDK--EIVRKIT------------------ATETTE-MEHKGKIQERVVDASELDDDGYYAITE 116 (283)
Q Consensus 59 ~v~~g~~v~l~C~~~-g~~--~i~~~~~------------------~~~~~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~a 116 (283)
+|.+|++|.|.|... +.. .+. |.. ..+|+. +...-....|+|.+++.+|+|.|.|..
T Consensus 26 ~V~ege~VtLsCs~t~s~~~~qVt-WkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F 104 (189)
T PHA02987 26 TVSEHVNVKISCNKTSSFNSILIT-WKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF 104 (189)
T ss_pred EEcCCCCEEEEEecCCCCccceEE-EEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence 577888999999974 322 222 111 112443 233334678999999999999999965
Q ss_pred E
Q psy14060 117 R 117 (283)
Q Consensus 117 ~ 117 (283)
.
T Consensus 105 ~ 105 (189)
T PHA02987 105 N 105 (189)
T ss_pred E
Confidence 4
No 331
>KOG0613|consensus
Probab=96.83 E-value=0.0026 Score=60.59 Aligned_cols=203 Identities=12% Similarity=0.072 Sum_probs=119.3
Q ss_pred CcEEEEEEEccCc--cce---EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceeee---ee---------
Q psy14060 64 KSQQVQKEKKGDK--EIV---RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSD---LS--------- 126 (283)
Q Consensus 64 ~~v~l~C~~~g~~--~i~---~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~---~~--------- 126 (283)
....+.|.+.++. .+. ..+..... .-+...+.|.+....+.+.|+|...+..+-.. ..
T Consensus 245 s~~~i~~~l~~~~G~~~~~~~~~l~e~~~-----~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~ 319 (1205)
T KOG0613|consen 245 SDRKIQLTLRAPRGPYSAHILGYLIEQRK-----HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKP 319 (1205)
T ss_pred hheeeeEEeecCCCchHHHHhcchhhhcc-----cCCCccccccccCCccccceeeecccCCcccceeeeEEeecccccc
Confidence 3588899888776 211 11111111 11234556677777778888887665544111 00
Q ss_pred -----ccCCCCC---CeEEecCCceeecCCCcEEEEEEEeeecCCE-EEEEeCCEecCCCC--CeEEEEeCCEEEEEEcC
Q psy14060 127 -----EQKPAKP---PVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSP--DFQIHTFSTKSILIMRQ 195 (283)
Q Consensus 127 -----~~~~~~~---p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~-~~W~k~~~~~~~~~--~~~~~~~~~~~~l~i~~ 195 (283)
......+ +.+...........+..+.+.|...+.+.|. +.||++........ ............+.+..
T Consensus 320 ~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~ 399 (1205)
T KOG0613|consen 320 GPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKD 399 (1205)
T ss_pred CchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhh
Confidence 0000111 2222233444566778899999999988886 99999766554332 22233334455688888
Q ss_pred CCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCC--CeEEEEEEEEeeCCC--eeEEe
Q psy14060 196 VFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG--QLARFDAKISATKPL--DVYWL 271 (283)
Q Consensus 196 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g--~~v~L~C~~~g~p~~--~v~W~ 271 (283)
+...+.+.|.|.+.|..|.........+...... ..|.............+ +.+.+.|.+.+.+.+ .++|+
T Consensus 400 ~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~g-----t~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~ 474 (1205)
T KOG0613|consen 400 AGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPG-----TQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTI 474 (1205)
T ss_pred cCcccccccccceeccCCcccccchhhcccccCC-----CCCccccccccccccccCCcccccccCCCCccccceeEeec
Confidence 9999999999999999988766655555432110 22333333333333444 778889988887755 46666
Q ss_pred eCCEE
Q psy14060 272 KVSSL 276 (283)
Q Consensus 272 ~~g~~ 276 (283)
+++-+
T Consensus 475 ~~~~~ 479 (1205)
T KOG0613|consen 475 KDGLP 479 (1205)
T ss_pred cCCcc
Confidence 66543
No 332
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.82 E-value=0.0064 Score=42.87 Aligned_cols=33 Identities=6% Similarity=0.008 Sum_probs=24.5
Q ss_pred CCEEEEEc--CCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060 86 ETTEMEHK--GKIQERVVDASELDDDGYYAITERK 118 (283)
Q Consensus 86 ~~~~~~~~--~~~~~L~i~~~~~~D~G~Y~C~a~n 118 (283)
+++..... .....|.|.++..+|+|.|.|.+..
T Consensus 63 ~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 63 GRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred CcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 34544432 2456899999999999999997754
No 333
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.77 E-value=0.0036 Score=42.47 Aligned_cols=75 Identities=11% Similarity=0.037 Sum_probs=42.8
Q ss_pred EecCCceeecCCCcEEEEEEEeee--cC-CEEEEEeCCEecCCCCCeEEEE-eCC---EEEEEEcCCCCCCCEEEEEEEE
Q psy14060 137 TKKIQPCRAFEQDQARFEVEFDGD--PL-PTIKWFREDFPITSSPDFQIHT-FST---KSILIMRQVFMEDSGVFAVIAE 209 (283)
Q Consensus 137 ~~~~~~~~~~~g~~v~l~C~~~g~--p~-~~~~W~k~~~~~~~~~~~~~~~-~~~---~~~l~i~~~~~~d~G~Y~C~a~ 209 (283)
+..+....+..+..++|.|.+.+. |. ..+.|.+++.. .......... ++. .+.|.+..-.......|+|.+.
T Consensus 8 l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~ 86 (99)
T cd04986 8 LQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVT 86 (99)
T ss_pred EECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEE
Confidence 334444455577889999999984 43 47999999875 1100000111 111 2245554333344467999998
Q ss_pred eCC
Q psy14060 210 NRG 212 (283)
Q Consensus 210 n~~ 212 (283)
+..
T Consensus 87 H~~ 89 (99)
T cd04986 87 HPE 89 (99)
T ss_pred CCC
Confidence 764
No 334
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.76 E-value=0.012 Score=39.71 Aligned_cols=65 Identities=17% Similarity=0.077 Sum_probs=38.6
Q ss_pred CCCcEEEEEEEeee-cC-CEEEEEeCCEecCCCC--CeEEEE-eCC---EEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060 147 EQDQARFEVEFDGD-PL-PTIKWFREDFPITSSP--DFQIHT-FST---KSILIMRQVFMEDSGVFAVIAENRG 212 (283)
Q Consensus 147 ~g~~v~l~C~~~g~-p~-~~~~W~k~~~~~~~~~--~~~~~~-~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~ 212 (283)
.++.++|.|.+.|. |. ..++|+|+|.. .... ...... .+. .+.|.+..........|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 45679999999995 54 47899999997 3221 001111 121 1234444332223568999998764
No 335
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=96.76 E-value=0.0019 Score=44.03 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.7
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEec
Q psy14060 95 KIQERVVDASELDDDGYYAITERKY 119 (283)
Q Consensus 95 ~~~~L~i~~~~~~D~G~Y~C~a~n~ 119 (283)
+..+|.|.+++.+|+|.|+|...+.
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~ 85 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATF 85 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeC
Confidence 5688999999999999999999883
No 336
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.69 E-value=0.023 Score=38.34 Aligned_cols=67 Identities=10% Similarity=-0.043 Sum_probs=40.0
Q ss_pred CcEEEEEEEe-eecCCEEEEEeCCEecCCCCCeEEEEeCC---EEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060 149 DQARFEVEFD-GDPLPTIKWFREDFPITSSPDFQIHTFST---KSILIMRQVFMEDSGVFAVIAENRGGKAK 216 (283)
Q Consensus 149 ~~v~l~C~~~-g~p~~~~~W~k~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 216 (283)
....+.|.+. |+|.+.|+|+++...... ........+. .+.|.+......|...|+|.+.|..-...
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~ 86 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEP 86 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCC
Confidence 3578999886 678999999997211100 0000111111 23566665555666799999998764433
No 337
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.66 E-value=0.0037 Score=42.85 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=25.6
Q ss_pred EEcCCCeEEEEEEEEeeCCC--eeEEeeCCEEecC
Q psy14060 247 VINVGQLARFDAKISATKPL--DVYWLKVSSLSDV 279 (283)
Q Consensus 247 ~v~~g~~v~L~C~~~g~p~~--~v~W~~~g~~l~~ 279 (283)
.+..|..++|.|.+.|..+. .++|++||+++..
T Consensus 12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~ 46 (102)
T cd05768 12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSK 46 (102)
T ss_pred HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCc
Confidence 34457889999999995433 5899999998753
No 338
>PHA02982 hypothetical protein; Provisional
Probab=96.64 E-value=0.088 Score=40.26 Aligned_cols=120 Identities=11% Similarity=0.174 Sum_probs=74.2
Q ss_pred CceeecCCCcEEEEEEEeeec-CCEEEEEeCCEe-cC---------------C---CCCeEEEEeCCEEEEEEcCCCCCC
Q psy14060 141 QPCRAFEQDQARFEVEFDGDP-LPTIKWFREDFP-IT---------------S---SPDFQIHTFSTKSILIMRQVFMED 200 (283)
Q Consensus 141 ~~~~~~~g~~v~l~C~~~g~p-~~~~~W~k~~~~-~~---------------~---~~~~~~~~~~~~~~l~i~~~~~~d 200 (283)
.+.....+++|.|.|...... -....|+++... +. + ...+.....+..++|+|.++..+.
T Consensus 32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N 111 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN 111 (251)
T ss_pred hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence 344567799999999864322 245789885432 21 0 112445666778899999999999
Q ss_pred CEEEEEEEEeCCceeEE-EEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCC-eEEEEEEEEeeCCCeeEEeeCCEE
Q psy14060 201 SGVFAVIAENRGGKAKC-SANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ-LARFDAKISATKPLDVYWLKVSSL 276 (283)
Q Consensus 201 ~G~Y~C~a~n~~g~~~~-~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~-~v~L~C~~~g~p~~~v~W~~~g~~ 276 (283)
.|-|+|.+....+.... ..-|.|+. -.+.. ...++. .-.+.|-+-..-.+-..|.-+|..
T Consensus 112 ~GCYtc~~ks~~~k~E~c~kCl~V~~-----------~~V~~-----~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 112 LGCFTCEAKDAEGKEETCEKCLEIQK-----------EDILY-----VVEEHNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred CCceEEEEecCCCchheeheeeeEec-----------ceEEE-----EEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 99999999876544332 34444432 11111 122233 345689876554443489888875
No 339
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=96.61 E-value=0.0024 Score=43.68 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=22.3
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEec
Q psy14060 95 KIQERVVDASELDDDGYYAITERKY 119 (283)
Q Consensus 95 ~~~~L~i~~~~~~D~G~Y~C~a~n~ 119 (283)
...+|.|.+++.+|+|.|.|...+.
T Consensus 62 ~~~sL~I~nv~~sD~GtY~C~v~~~ 86 (100)
T cd05888 62 ADGALILRNAVQADEGKYKCRVITF 86 (100)
T ss_pred CceEEEEecCccccceEEEEEEEeC
Confidence 5778999999999999999988763
No 340
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=96.51 E-value=0.0059 Score=41.11 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=26.8
Q ss_pred cCCCeEEEEEEEEee-CC-CeeEEeeCCEEecCC
Q psy14060 249 NVGQLARFDAKISAT-KP-LDVYWLKVSSLSDVK 280 (283)
Q Consensus 249 ~~g~~v~L~C~~~g~-p~-~~v~W~~~g~~l~~~ 280 (283)
..|+.+.|.|.+.|. |. +.++|++||+.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~ 44 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSG 44 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCc
Confidence 468899999999997 53 479999999988654
No 341
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=96.48 E-value=0.0084 Score=41.77 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=27.1
Q ss_pred eEEcCCCeEEEEEEEEee-CC-CeeEEeeCCEEecC
Q psy14060 246 AVINVGQLARFDAKISAT-KP-LDVYWLKVSSLSDV 279 (283)
Q Consensus 246 ~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~g~~l~~ 279 (283)
.....|+.++|.|.+.|. |. ..++|++||+.+..
T Consensus 16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~ 51 (111)
T cd05772 16 GRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSA 51 (111)
T ss_pred hccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcc
Confidence 345678889999999884 53 37999999999864
No 342
>PHA02633 hypothetical protein; Provisional
Probab=96.47 E-value=0.011 Score=35.63 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=31.4
Q ss_pred EEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEe
Q psy14060 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225 (283)
Q Consensus 189 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 225 (283)
..|.|-++..+|+|.|.|..+|..-....+..+.|..
T Consensus 18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 18 NNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred ccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 3588999999999999999998877777778888775
No 343
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=96.45 E-value=0.0049 Score=40.23 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=22.6
Q ss_pred EEEEEEEEe-eCCCeeEEeeCCEEecCC
Q psy14060 254 ARFDAKISA-TKPLDVYWLKVSSLSDVK 280 (283)
Q Consensus 254 v~L~C~~~g-~p~~~v~W~~~g~~l~~~ 280 (283)
+.|.|.+.| .|.+.|+||++|+++...
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~ 29 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGK 29 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCc
Confidence 689999976 577799999999998754
No 344
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=96.43 E-value=0.0049 Score=40.50 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=22.8
Q ss_pred EEEEEEEEe-eCCCeeEEeeCCEEecCC
Q psy14060 254 ARFDAKISA-TKPLDVYWLKVSSLSDVK 280 (283)
Q Consensus 254 v~L~C~~~g-~p~~~v~W~~~g~~l~~~ 280 (283)
+.|.|.+.| +|.+.|+|++||+.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~ 29 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGA 29 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCc
Confidence 689999987 488899999999987653
No 345
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=96.42 E-value=0.0046 Score=40.53 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=21.7
Q ss_pred EEEEEEEEe-eCCCeeEEeeCCEEec
Q psy14060 254 ARFDAKISA-TKPLDVYWLKVSSLSD 278 (283)
Q Consensus 254 v~L~C~~~g-~p~~~v~W~~~g~~l~ 278 (283)
+.|.|.+.+ +|.+.+.|++||+.+.
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~ 27 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELK 27 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEcc
Confidence 689999976 4888999999999885
No 346
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=96.41 E-value=0.011 Score=39.84 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=22.2
Q ss_pred CCeEEEEEEEEee-CCC-eeEEeeCCEEe
Q psy14060 251 GQLARFDAKISAT-KPL-DVYWLKVSSLS 277 (283)
Q Consensus 251 g~~v~L~C~~~g~-p~~-~v~W~~~g~~l 277 (283)
|+.++|.|.+.|. |.. .++|+++|+.+
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~ 42 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDS 42 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEEC
Confidence 6789999999995 544 79999999743
No 347
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=96.38 E-value=0.0073 Score=40.16 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=22.7
Q ss_pred CCeEEEEEEEE-eeCCCeeEEeeCCEEe
Q psy14060 251 GQLARFDAKIS-ATKPLDVYWLKVSSLS 277 (283)
Q Consensus 251 g~~v~L~C~~~-g~p~~~v~W~~~g~~l 277 (283)
|+.+.|.|.+. ++|.|.++|+.+|..+
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~ 41 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPV 41 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCce
Confidence 78999999775 6788899999999877
No 348
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.38 E-value=0.019 Score=38.59 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=41.2
Q ss_pred ecCCCcEEEEEEEee-ecC--CEEEEEeCCEecCCCCCeEE----EEeCCEEEEEEcCCCCCCCE-EEEEEEEeC
Q psy14060 145 AFEQDQARFEVEFDG-DPL--PTIKWFREDFPITSSPDFQI----HTFSTKSILIMRQVFMEDSG-VFAVIAENR 211 (283)
Q Consensus 145 ~~~g~~v~l~C~~~g-~p~--~~~~W~k~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~ 211 (283)
+..|..+++.|.+.+ +|. ..+.|++....+.......- ........+.+... ++|.| +|+|.|.-.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 478999999999975 455 57999997766544321110 00112234555554 66666 999998643
No 349
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=96.37 E-value=0.0053 Score=40.34 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=21.9
Q ss_pred EEEEEEEEe-eCCCeeEEeeCCEEecC
Q psy14060 254 ARFDAKISA-TKPLDVYWLKVSSLSDV 279 (283)
Q Consensus 254 v~L~C~~~g-~p~~~v~W~~~g~~l~~ 279 (283)
+.|.|.+.| +|...++|++||+.+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~ 28 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKD 28 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcC
Confidence 689999987 67778999999999753
No 350
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.35 E-value=0.0049 Score=39.89 Aligned_cols=30 Identities=10% Similarity=0.177 Sum_probs=24.0
Q ss_pred CCEEEEEc--CCEEEEEEccCCCCCCeEEEEE
Q psy14060 86 ETTEMEHK--GKIQERVVDASELDDDGYYAIT 115 (283)
Q Consensus 86 ~~~~~~~~--~~~~~L~i~~~~~~D~G~Y~C~ 115 (283)
.++.+... .+...|.|.+++.+|+|.|.|.
T Consensus 49 ~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 49 GRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 45554433 5788999999999999999995
No 351
>PHA02633 hypothetical protein; Provisional
Probab=96.35 E-value=0.0037 Score=37.69 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=22.9
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 95 KIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
....|.|.++..+|+|.|.|..+|..-
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~ 42 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETY 42 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCe
Confidence 345688999999999999999987754
No 352
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.32 E-value=0.0067 Score=41.44 Aligned_cols=34 Identities=15% Similarity=0.051 Sum_probs=26.2
Q ss_pred ceEEcCCCeEEEEEEEEee-C-CCeeEEeeCCEEec
Q psy14060 245 SAVINVGQLARFDAKISAT-K-PLDVYWLKVSSLSD 278 (283)
Q Consensus 245 ~~~v~~g~~v~L~C~~~g~-p-~~~v~W~~~g~~l~ 278 (283)
......++.++|.|.+.|. | ...+.|++||+.+.
T Consensus 11 ~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~ 46 (100)
T cd07699 11 SEELEKSGKATLVCLINDFYPGFATVQWKVDGATVS 46 (100)
T ss_pred HHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECc
Confidence 3344567889999999984 4 33799999999985
No 353
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=96.30 E-value=0.0045 Score=41.86 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=21.7
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEec
Q psy14060 95 KIQERVVDASELDDDGYYAITERKY 119 (283)
Q Consensus 95 ~~~~L~i~~~~~~D~G~Y~C~a~n~ 119 (283)
...+|.|.|++.+|+|.|+|....-
T Consensus 58 ~d~sI~i~nvt~~D~G~Y~C~~~t~ 82 (96)
T cd05889 58 EDMSLSFNNATEEDVGLYCCSLVTY 82 (96)
T ss_pred CccEEEEcCCCcccCEEEEEEEEeC
Confidence 4688999999999999999977654
No 354
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.29 E-value=1.5 Score=46.51 Aligned_cols=223 Identities=11% Similarity=0.044 Sum_probs=125.4
Q ss_pred eEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeecCCeeeecCcEEEEEEEccCccce-EE-eecCCCEEEEEcCCEEE
Q psy14060 21 KSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIV-RK-ITATETTEMEHKGKIQE 98 (283)
Q Consensus 21 ~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~~~i~-~~-~~~~~~~~~~~~~~~~~ 98 (283)
...+|+|..|..+...++.|..+.... .... ....+..++.|.|.-.+.+...++ +| +.++..... .....+
T Consensus 1674 VtL~aSN~vG~~t~s~~i~v~epi~~L---~L~a-S~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~--s~p~~t 1747 (2740)
T TIGR00864 1674 IFLQAANLLGQATADCTIDFLEPAGNL---MLQA-SDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLET--SEPFMS 1747 (2740)
T ss_pred EEEEEeecccceeeEEEEEEEEEcCce---EEec-cCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCccc--CCCceE
Confidence 467899999999888888887754321 1111 112255567788887766555433 22 222211110 011001
Q ss_pred EEEccCCCCCCeEEEE--EEEecceeee-eeccCCCCCCe---EEecCC-ce-eecCCCcEEEEEEEeeecCCEEEEEeC
Q psy14060 99 RVVDASELDDDGYYAI--TERKYYALSD-LSEQKPAKPPV---FTKKIQ-PC-RAFEQDQARFEVEFDGDPLPTIKWFRE 170 (283)
Q Consensus 99 L~i~~~~~~D~G~Y~C--~a~n~~~~~~-~~~~~~~~~p~---~~~~~~-~~-~~~~g~~v~l~C~~~g~p~~~~~W~k~ 170 (283)
-+....|.|.- .+.|..+... ...+.+..+.. +..... .. .+..|..+.|.-.+.......+.|..+
T Consensus 1748 -----Htf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~ 1822 (2740)
T TIGR00864 1748 -----HSFPSAGLHLVTMKAFNELGSANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAID 1822 (2740)
T ss_pred -----EEccCCceEEEEEEEEccccccceeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeC
Confidence 12456788887 4666666322 22223322222 211111 11 344566777766654334456788776
Q ss_pred CEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEE--EEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEE
Q psy14060 171 DFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAV--IAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVI 248 (283)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C--~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v 248 (283)
+..-... .. . ..+..+.|.|+. .|.|..+....+..+.|+++ .-.+........+
T Consensus 1823 ~g~s~~g---------k~--v---~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~---------I~~L~L~as~~~~ 1879 (2740)
T TIGR00864 1823 GGSSKMG---------KH--A---CMTFPDAGTFAIRLNASNAVSGKSASREFFAEEP---------IFGLELKASKKIA 1879 (2740)
T ss_pred CCCcccc---------ce--e---EEecCCCeEEEEEEEEEcccCcceeeeeEEEEEe---------cceEEEecccccc
Confidence 5421111 10 1 134567899976 57788888888888888862 2244444455577
Q ss_pred cCCCeEEEEEEEEeeCCCeeEEeeC-CEEe
Q psy14060 249 NVGQLARFDAKISATKPLDVYWLKV-SSLS 277 (283)
Q Consensus 249 ~~g~~v~L~C~~~g~p~~~v~W~~~-g~~l 277 (283)
..|+.++|.+.....+...+.|..+ |.+.
T Consensus 1880 ~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~ 1909 (2740)
T TIGR00864 1880 AIGEKVEFQILLAAGSAVNFRLQIGGAAPE 1909 (2740)
T ss_pred cCCCEEEEEEEecCCCceEEEEEeCCCCce
Confidence 8999999999887666778999764 4443
No 355
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.26 E-value=0.01 Score=36.43 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=22.8
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060 95 KIQERVVDASELDDDGYYAITERKYY 120 (283)
Q Consensus 95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~ 120 (283)
....|.|.+++..|.|.|.|.+.+..
T Consensus 41 ~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 41 GSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred eEEEEEECccCcccCcEEEEEEecCc
Confidence 56789999999999999999887764
No 356
>PHA03273 envelope glycoprotein C; Provisional
Probab=96.26 E-value=0.049 Score=46.68 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=58.2
Q ss_pred EEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC--
Q psy14060 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL-- 266 (283)
Q Consensus 189 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-- 266 (283)
..|.|..++..+.|.|+=...+..+.......+.|... .+|.+...+ .-+.+|+...-.|.+..+-++
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~y--------r~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~S 267 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTY--------NAPLVDLSV--HPSLKGENYRAVCVVASYFPHSS 267 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEe--------cCCcccccC--CccccCCCceEEEEeeeecCCCc
Confidence 35999999999999998554455454444455555432 356655433 346899999999999886555
Q ss_pred -eeEEeeCCEEecC
Q psy14060 267 -DVYWLKVSSLSDV 279 (283)
Q Consensus 267 -~v~W~~~g~~l~~ 279 (283)
.+.|+.||.++..
T Consensus 268 v~~rWf~dg~~V~~ 281 (486)
T PHA03273 268 VKLRWYKNAKEVDF 281 (486)
T ss_pred eEEEEEeCCeeccc
Confidence 5999999999884
No 357
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=96.24 E-value=0.01 Score=41.51 Aligned_cols=27 Identities=11% Similarity=-0.016 Sum_probs=23.7
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 95 KIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
+..+|.|.+++.+|+|.|.|...+...
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~ 103 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIE 103 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCc
Confidence 578999999999999999998876644
No 358
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.23 E-value=0.0082 Score=42.05 Aligned_cols=37 Identities=14% Similarity=-0.010 Sum_probs=27.4
Q ss_pred CCceEEcCCCeEEEEEEEEee-CCC-eeEEeeCCEEecC
Q psy14060 243 ISSAVINVGQLARFDAKISAT-KPL-DVYWLKVSSLSDV 279 (283)
Q Consensus 243 ~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~g~~l~~ 279 (283)
+....+..++.++|.|.+.|. |.. .++|++||+.+..
T Consensus 10 ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~ 48 (115)
T cd05769 10 PSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTD 48 (115)
T ss_pred cChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCC
Confidence 333344567789999999985 443 7999999998764
No 359
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.23 E-value=0.022 Score=39.55 Aligned_cols=57 Identities=5% Similarity=-0.036 Sum_probs=38.3
Q ss_pred eeecCcEEEEEEEccCc--c-ce-----------EEe-----------ecCCC--EEEEEcCCEEEEEEccCCCCCCeEE
Q psy14060 60 IHTAKSQQVQKEKKGDK--E-IV-----------RKI-----------TATET--TEMEHKGKIQERVVDASELDDDGYY 112 (283)
Q Consensus 60 v~~g~~v~l~C~~~g~~--~-i~-----------~~~-----------~~~~~--~~~~~~~~~~~L~i~~~~~~D~G~Y 112 (283)
+..|+.++|.|.+.|.. . .. .+. ....+ ...+...+...|.|.+++.+|++.|
T Consensus 10 v~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y 89 (115)
T cd05721 10 ASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDIY 89 (115)
T ss_pred EcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEE
Confidence 55667899999997654 1 21 011 01122 2334456789999999999999999
Q ss_pred EEEE
Q psy14060 113 AITE 116 (283)
Q Consensus 113 ~C~a 116 (283)
.|..
T Consensus 90 ~Ca~ 93 (115)
T cd05721 90 FCKI 93 (115)
T ss_pred EEEe
Confidence 9965
No 360
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.13 E-value=0.021 Score=38.40 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=23.6
Q ss_pred cCCCeEEEEEEEEeeCCC--eeEEeeCCEEec
Q psy14060 249 NVGQLARFDAKISATKPL--DVYWLKVSSLSD 278 (283)
Q Consensus 249 ~~g~~v~L~C~~~g~p~~--~v~W~~~g~~l~ 278 (283)
..|...+|.|.+.|.-++ .++|++||+.+.
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~ 44 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP 44 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC
Confidence 346677999999995333 689999999875
No 361
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.06 E-value=0.014 Score=39.46 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=25.2
Q ss_pred EEcCCCeEEEEEEEEee-CCC-eeEEeeCCEEecC
Q psy14060 247 VINVGQLARFDAKISAT-KPL-DVYWLKVSSLSDV 279 (283)
Q Consensus 247 ~v~~g~~v~L~C~~~g~-p~~-~v~W~~~g~~l~~ 279 (283)
.+..+..++|.|.+.|. |.. .++|.+||+.+..
T Consensus 12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~ 46 (96)
T cd07697 12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSIL 46 (96)
T ss_pred HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence 34456778999999994 433 6899999998754
No 362
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.04 E-value=0.025 Score=38.09 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=23.6
Q ss_pred CCCeEEEEEEEEee-CCC-eeEEeeCCEEecC
Q psy14060 250 VGQLARFDAKISAT-KPL-DVYWLKVSSLSDV 279 (283)
Q Consensus 250 ~g~~v~L~C~~~g~-p~~-~v~W~~~g~~l~~ 279 (283)
.|+..+|.|.+.|. |.. .++|.+||+.+..
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~ 45 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTD 45 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccC
Confidence 45667999999994 543 6899999998754
No 363
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=95.99 E-value=0.007 Score=42.08 Aligned_cols=26 Identities=15% Similarity=0.028 Sum_probs=23.0
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060 95 KIQERVVDASELDDDGYYAITERKYY 120 (283)
Q Consensus 95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~ 120 (283)
+..+|.|++++.+|+|.|.|......
T Consensus 70 ~~asL~i~nv~~~D~G~Y~C~v~~g~ 95 (110)
T cd05902 70 YNASLVLSRLRYSDSGTYRCEVVLGI 95 (110)
T ss_pred ceEEEEECCCCHHHCEEEEEEEEECC
Confidence 57899999999999999999887643
No 364
>PHA03270 envelope glycoprotein C; Provisional
Probab=95.96 E-value=0.082 Score=44.93 Aligned_cols=81 Identities=10% Similarity=0.062 Sum_probs=58.5
Q ss_pred EEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC--
Q psy14060 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL-- 266 (283)
Q Consensus 189 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-- 266 (283)
..|.|..++....|.|+=..-+..+.......+.|... .+|.+...+ .-+..|+...-.|.+..+-++
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~y--------r~Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~S 251 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMF--------RRPSLSIRP--HAVLEGEPFGATCVAANYYPGDR 251 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEe--------cCCcccccC--CccccCCCceEEEEeeeecCCCc
Confidence 35999999999999999887666654443333444432 356655433 346789999999999886555
Q ss_pred -eeEEeeCCEEecC
Q psy14060 267 -DVYWLKVSSLSDV 279 (283)
Q Consensus 267 -~v~W~~~g~~l~~ 279 (283)
.+.||.||.++..
T Consensus 252 v~lrWf~ng~~V~~ 265 (466)
T PHA03270 252 AAFRWFEGGDEVFA 265 (466)
T ss_pred eEEEEEeCCccccC
Confidence 5999999998864
No 365
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=95.87 E-value=0.03 Score=37.71 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=25.1
Q ss_pred cCCCeEEEEEEEEee-CCC-eeEEeeCCEEecC
Q psy14060 249 NVGQLARFDAKISAT-KPL-DVYWLKVSSLSDV 279 (283)
Q Consensus 249 ~~g~~v~L~C~~~g~-p~~-~v~W~~~g~~l~~ 279 (283)
..|+.++|.|.+.|. |.. .++|++||+.+..
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~ 44 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETE 44 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCC
Confidence 367889999999995 433 6899999998765
No 366
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=95.86 E-value=0.018 Score=38.83 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=22.7
Q ss_pred CCCeEEEEEEEEee-CC-CeeEEeeCCEEe
Q psy14060 250 VGQLARFDAKISAT-KP-LDVYWLKVSSLS 277 (283)
Q Consensus 250 ~g~~v~L~C~~~g~-p~-~~v~W~~~g~~l 277 (283)
..+.+.|.|.+.|. |. ..++|++||+.+
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~ 42 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVA 42 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEEC
Confidence 45668999999984 54 378999999986
No 367
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.86 E-value=0.032 Score=37.66 Aligned_cols=27 Identities=7% Similarity=0.020 Sum_probs=22.0
Q ss_pred CCCeEEEEEEEEee-CCC-eeEEeeCCEE
Q psy14060 250 VGQLARFDAKISAT-KPL-DVYWLKVSSL 276 (283)
Q Consensus 250 ~g~~v~L~C~~~g~-p~~-~v~W~~~g~~ 276 (283)
.++.++|.|.+.|. |.. .++|++||+.
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 46678999999995 433 6899999997
No 368
>KOG4597|consensus
Probab=95.85 E-value=0.014 Score=49.87 Aligned_cols=90 Identities=7% Similarity=0.047 Sum_probs=64.8
Q ss_pred EEecCCceeecCCCcEEEEEEEeeecCCEEEEEe---CCEe--cCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060 136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFR---EDFP--ITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 210 (283)
Q Consensus 136 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k---~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 210 (283)
+..-+....+..+++..+.|-+.|.+.+.++|.+ ++.. +.....+..........|.|-+....|+|.|+|.+.+
T Consensus 199 l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rc 278 (560)
T KOG4597|consen 199 LVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARC 278 (560)
T ss_pred cccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccc
Confidence 3334455678889999999999999999999965 2222 2222111111122355799999999999999999999
Q ss_pred CCceeEEEEEEEEEe
Q psy14060 211 RGGKAKCSANLVVEE 225 (283)
Q Consensus 211 ~~g~~~~~~~l~v~~ 225 (283)
.+|.....+.+.+..
T Consensus 279 g~g~~~rdv~c~s~~ 293 (560)
T KOG4597|consen 279 GAGFLRRDVPCSSVK 293 (560)
T ss_pred ccceeeccceeeeec
Confidence 999988887777654
No 369
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=95.84 E-value=0.071 Score=35.99 Aligned_cols=70 Identities=11% Similarity=0.119 Sum_probs=42.0
Q ss_pred ceeecCCCcEEE-EEEE-eeecCCEEEEEeCCEecCCCCCeEEEEeCC---EEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060 142 PCRAFEQDQARF-EVEF-DGDPLPTIKWFREDFPITSSPDFQIHTFST---KSILIMRQVFMEDSGVFAVIAENRG 212 (283)
Q Consensus 142 ~~~~~~g~~v~l-~C~~-~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~ 212 (283)
...+..|+.+.+ .|.+ .|+|.+.|+|+.+...... ........+. .+.+.+......|.-.++|.+.+..
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~-~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE-SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc-eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 345667777777 8887 5679999999987332211 0000000111 2346665555566779999998764
No 370
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=95.78 E-value=0.024 Score=36.32 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=20.2
Q ss_pred EEEEEEEEee-CC-CeeEEeeCCEEec
Q psy14060 254 ARFDAKISAT-KP-LDVYWLKVSSLSD 278 (283)
Q Consensus 254 v~L~C~~~g~-p~-~~v~W~~~g~~l~ 278 (283)
++|.|.+.|. |. ..++|++||+++.
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~ 28 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVT 28 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECC
Confidence 6899999986 44 4799999999743
No 371
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.65 E-value=0.014 Score=39.45 Aligned_cols=31 Identities=10% Similarity=0.158 Sum_probs=24.0
Q ss_pred eEEcCCCeEEEEEEEEee--CCC-eeEEeeCCEE
Q psy14060 246 AVINVGQLARFDAKISAT--KPL-DVYWLKVSSL 276 (283)
Q Consensus 246 ~~v~~g~~v~L~C~~~g~--p~~-~v~W~~~g~~ 276 (283)
..+..|+.++|.|.+.|. |.. .++|+|||..
T Consensus 9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~ 42 (96)
T cd07696 9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGE 42 (96)
T ss_pred HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeE
Confidence 345678999999999998 333 6899998743
No 372
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=95.43 E-value=0.053 Score=35.48 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=24.6
Q ss_pred CCCeEEEEEEEEee-CCC-eeEEeeCCEEecC
Q psy14060 250 VGQLARFDAKISAT-KPL-DVYWLKVSSLSDV 279 (283)
Q Consensus 250 ~g~~v~L~C~~~g~-p~~-~v~W~~~g~~l~~ 279 (283)
.++.+.|.|.+.+. |.. .|.|++||+.+..
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~ 38 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTE 38 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETT
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeee
Confidence 48899999999985 433 6999999998764
No 373
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=95.23 E-value=5.3 Score=42.77 Aligned_cols=222 Identities=15% Similarity=0.103 Sum_probs=123.9
Q ss_pred ceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCceeeec-CC--eeeecCcEEEEEEEccCccce-EEeecCCCEEEEEcCC
Q psy14060 20 LKSRTASSDRSGVSTEETKIIDGRKVSVPEPSASGVH-GK--EIHTAKSQQVQKEKKGDKEIV-RKITATETTEMEHKGK 95 (283)
Q Consensus 20 ~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~~~~-~~--~v~~g~~v~l~C~~~g~~~i~-~~~~~~~~~~~~~~~~ 95 (283)
...-+|.|..|.......+.|..+.. ...+.... +. -+..|..+.|.=+++....+. .|.-...... .+.
T Consensus 1757 ~VtVta~N~vss~~~s~~V~VqepV~---GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~---~gk 1830 (2740)
T TIGR00864 1757 LVTMKAFNELGSANASEEVDVQEPIS---GLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSK---MGK 1830 (2740)
T ss_pred EEEEEEEccccccceeEEEEEEeccc---cceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCcc---ccc
Confidence 34568999999988888888877643 12222111 11 133455677766654333332 2221111101 112
Q ss_pred EEEEEEccCCCCCCeEEEE--EEEeccee-eeeeccCCCCCC-eEEecCCceeecCCCcEEEEEEEeeecCCEEEEEeCC
Q psy14060 96 IQERVVDASELDDDGYYAI--TERKYYAL-SDLSEQKPAKPP-VFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED 171 (283)
Q Consensus 96 ~~~L~i~~~~~~D~G~Y~C--~a~n~~~~-~~~~~~~~~~~p-~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~ 171 (283)
... .+..++|.|+- .|.|..+. .....+.+..++ .+........+..|+.+.|.+.+...+...+.|...+
T Consensus 1831 ~v~-----~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGd 1905 (2740)
T TIGR00864 1831 HAC-----MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGG 1905 (2740)
T ss_pred eeE-----EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCC
Confidence 222 45679999998 56777663 223334444444 2333445556778999999999877677888996653
Q ss_pred E-ecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEE--EEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCC-ceE
Q psy14060 172 F-PITSSPDFQIHTFSTKSILIMRQVFMEDSGVF--AVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTIS-SAV 247 (283)
Q Consensus 172 ~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y--~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~-~~~ 247 (283)
. ...... +...... - ..-|.| ...+.|..+.......+.|.++ -.-+..... ...
T Consensus 1906 gs~~~~t~-------~~t~~Hs---Y--~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~---------V~gL~I~~~c~~~ 1964 (2740)
T TIGR00864 1906 AAPEVLQP-------GPRFSHS---F--PRVDDHMVNLRAKNEVSCAQANLHIEVLEA---------VRGLQIPDCCAAG 1964 (2740)
T ss_pred CCceeecC-------CCeEEee---c--CCCCcEEEEEEEEeccceeeeeEEEEEEEe---------ccceEecCCcccc
Confidence 3 221101 1110111 1 123445 5567888888888777777652 112222111 112
Q ss_pred EcCCCeEEEEEEEEeeCCCeeEEeeC
Q psy14060 248 INVGQLARFDAKISATKPLDVYWLKV 273 (283)
Q Consensus 248 v~~g~~v~L~C~~~g~p~~~v~W~~~ 273 (283)
+..|+..+|.-.+....+..+.|+++
T Consensus 1965 ~~~g~~~tF~A~v~~g~~V~f~W~f~ 1990 (2740)
T TIGR00864 1965 IATGEEKNFTANVQRGKPVAFAWTFD 1990 (2740)
T ss_pred eecCceEEEEEEEecCCceEEEEEee
Confidence 68899999998886545567999865
No 374
>PHA03269 envelope glycoprotein C; Provisional
Probab=95.13 E-value=0.17 Score=43.70 Aligned_cols=81 Identities=11% Similarity=0.038 Sum_probs=54.9
Q ss_pred EEEEEcCCCCCCCEEEEEEEEeC-CceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC-
Q psy14060 189 SILIMRQVFMEDSGVFAVIAENR-GGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL- 266 (283)
Q Consensus 189 ~~l~i~~~~~~d~G~Y~C~a~n~-~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~- 266 (283)
..|.|.++...+.|.|+=+..+. .+.......+.|... .+|.+... ..-+.+|+...-.|.+..+-++
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y--------r~PsVsV~--p~PVL~Ge~YkAtC~vA~YYPp~ 358 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY--------KRPNITVI--GDPVLLGNPYAAYCKVNKYYPPH 358 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe--------cCCCcccc--CCccccCCCceEEEEeeeecCCC
Confidence 46999999999999997554332 233333333444332 25554443 3346899999999999886555
Q ss_pred --eeEEeeCCEEecC
Q psy14060 267 --DVYWLKVSSLSDV 279 (283)
Q Consensus 267 --~v~W~~~g~~l~~ 279 (283)
.+.|++||.++..
T Consensus 359 SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 359 SVIVKWTSNFGNIGK 373 (566)
T ss_pred ceEEEEEeCCcccCc
Confidence 5999999988874
No 375
>PHA03271 envelope glycoprotein C; Provisional
Probab=95.09 E-value=0.9 Score=38.72 Aligned_cols=80 Identities=16% Similarity=0.142 Sum_probs=54.7
Q ss_pred EEEEEcCCCCCCCEEEEEEEEeCCce--eEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEEEeeCCC
Q psy14060 189 SILIMRQVFMEDSGVFAVIAENRGGK--AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL 266 (283)
Q Consensus 189 ~~l~i~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~ 266 (283)
..|.|.++...++|.|.-...+.... ......+.+.. .||.+...+ .-+..|+...-.|.+..+-+|
T Consensus 207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~---------RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP 275 (490)
T PHA03271 207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQ---------RPASVDVLA--PPVLSGENYKASCIVRHFYPP 275 (490)
T ss_pred eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEe---------cCCCccccC--CccccCCCceEEEEeeeecCC
Confidence 46899999999999775555443332 22334444444 366555433 346789999999999886555
Q ss_pred ---eeEEeeCCEEecC
Q psy14060 267 ---DVYWLKVSSLSDV 279 (283)
Q Consensus 267 ---~v~W~~~g~~l~~ 279 (283)
.+.|++||.++..
T Consensus 276 ~SvrlrWf~nG~~V~~ 291 (490)
T PHA03271 276 GSVYVSWRQNGNIATP 291 (490)
T ss_pred CceEEEEEeCCccccC
Confidence 5999999988754
No 376
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=94.59 E-value=0.09 Score=37.41 Aligned_cols=79 Identities=10% Similarity=0.067 Sum_probs=42.7
Q ss_pred ecCCCcEEEEEEEeee-----cCCEEEEEeCCEecCC--CCCeEEEE-----------eCCEEEEEEcCCCCCCCEEEEE
Q psy14060 145 AFEQDQARFEVEFDGD-----PLPTIKWFREDFPITS--SPDFQIHT-----------FSTKSILIMRQVFMEDSGVFAV 206 (283)
Q Consensus 145 ~~~g~~v~l~C~~~g~-----p~~~~~W~k~~~~~~~--~~~~~~~~-----------~~~~~~l~i~~~~~~d~G~Y~C 206 (283)
..-+++|.|.|.+... +.-.+.|..++..+.. +....... ..+.++|.+.....- .|+|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 3447899999998652 2346899998876531 11111100 011234666553333 799999
Q ss_pred EEEeCCceeEEEEEEEEE
Q psy14060 207 IAENRGGKAKCSANLVVE 224 (283)
Q Consensus 207 ~a~n~~g~~~~~~~l~v~ 224 (283)
.+............|...
T Consensus 103 eVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 103 EVTELSREGETTIELKYR 120 (130)
T ss_dssp EEEETTEEEEEEEEEEE-
T ss_pred EEEecCCCceEEEEEEEE
Confidence 999887777766666653
No 377
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.58 E-value=0.063 Score=42.64 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=37.8
Q ss_pred cCCEEEEEeC-CEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060 161 PLPTIKWFRE-DFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG 212 (283)
Q Consensus 161 p~~~~~W~k~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 212 (283)
..|.+.|... ++.+..+.++.+...+ .|.+.+...+++|.|+|......
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEEe
Confidence 4689999875 4555555566666544 49999999999999999987654
No 378
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.12 E-value=0.073 Score=36.10 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=27.3
Q ss_pred EEecCCceEEcCCCeEEEEEEEEeeC--CC-eeEEeeCCEE
Q psy14060 239 FLTTISSAVINVGQLARFDAKISATK--PL-DVYWLKVSSL 276 (283)
Q Consensus 239 ~~~~~~~~~v~~g~~v~L~C~~~g~p--~~-~v~W~~~g~~ 276 (283)
++.++....+..+..++|.|.+.+.- .. .|+|.++|+.
T Consensus 7 ~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 7 SLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred EEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 33334444555788999999999843 32 6999999875
No 379
>PHA02982 hypothetical protein; Provisional
Probab=93.61 E-value=0.25 Score=37.89 Aligned_cols=83 Identities=5% Similarity=0.033 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecceeee--eeccCCCCCCeEEecCCceeecCC-CcEEEEEEEeeec
Q psy14060 85 TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYALSD--LSEQKPAKPPVFTKKIQPCRAFEQ-DQARFEVEFDGDP 161 (283)
Q Consensus 85 ~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~g-~~v~l~C~~~g~p 161 (283)
...+..+-.+...+|+|.++..+..|-|+|.+....+... ..-+.++.-..+. ...++ ..-.+.|-+-...
T Consensus 88 kd~y~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~------~W~e~nNeT~V~CyVgS~~ 161 (251)
T PHA02982 88 KDKYALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKEDILY------VVEEHNNETIITCFVGSKH 161 (251)
T ss_pred ceeEEEEEeccceeEEeccCCcccCCceEEEEecCCCchheeheeeeEecceEEE------EEEecCCeEEEEEEEEecc
Confidence 3455666677889999999999999999999987654221 1222221111111 11122 2346788875443
Q ss_pred CCEEEEEeCCEe
Q psy14060 162 LPTIKWFREDFP 173 (283)
Q Consensus 162 ~~~~~W~k~~~~ 173 (283)
.+-..|..+|..
T Consensus 162 ~dvp~W~V~GVv 173 (251)
T PHA02982 162 GDVPRFIVAGIV 173 (251)
T ss_pred CCCccEEEeeEE
Confidence 332388877764
No 380
>PHA03042 CD47-like protein; Provisional
Probab=92.98 E-value=0.88 Score=36.50 Aligned_cols=68 Identities=18% Similarity=0.064 Sum_probs=42.6
Q ss_pred CCCcEEEEEEEeee-----cCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEE
Q psy14060 147 EQDQARFEVEFDGD-----PLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL 221 (283)
Q Consensus 147 ~g~~v~l~C~~~g~-----p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 221 (283)
-++++.+.|.+..- ..-.+.|..++..+...... ..++|.+.... .-.|+|+|.+.+..........+
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f~~-~l~GNYTCEv~~l~n~gk~~IeL 102 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNFSK-NLSGNYTCEAINKFNKIKNTIEL 102 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEeccc-cCCCceeEEEeecccCccEEEEE
Confidence 46789999998652 24568999998876432211 12345554333 34799999998766544444333
No 381
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=92.79 E-value=0.21 Score=30.76 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=27.4
Q ss_pred cCcEEEEEEEccCccceEEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060 63 AKSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKY 119 (283)
Q Consensus 63 g~~v~l~C~~~g~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 119 (283)
|.+|+|+|-..+.. | .|...... ..+....+.+.+-. +++|.|.|.+.+.
T Consensus 7 GTtVtlTCP~~~~~-i-~W~~n~~~----~~g~~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 7 GTTVTVTCPLSGDD-I-KWKKNDQV----SQGSDEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred ccEEEEECCCCCCC-c-eEEeCCcc----CCCCCceEEeeccC-CCCceEEEEeCCC
Confidence 55899999654333 3 33332211 11111233344444 8999999988654
No 382
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=92.54 E-value=0.79 Score=31.25 Aligned_cols=74 Identities=16% Similarity=0.298 Sum_probs=43.0
Q ss_pred cEEEEEEEeeecCCE--EEEEeCCEecCCC-CCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEE-EEEEEE
Q psy14060 150 QARFEVEFDGDPLPT--IKWFREDFPITSS-PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC-SANLVV 223 (283)
Q Consensus 150 ~v~l~C~~~g~p~~~--~~W~k~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v 223 (283)
++...-...+.+... ++|..+....... ..-++.......+|.|..+..+|+|.|.-.+++..|.... .+.+.|
T Consensus 29 sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 29 SVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp EEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred EEEEEEEcccCCceEEEEEEcCCCcccccccccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 455555554444433 5565444433221 1112334444558999999999999999999998887633 344444
No 383
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=91.07 E-value=1.6 Score=28.99 Aligned_cols=68 Identities=10% Similarity=0.081 Sum_probs=43.8
Q ss_pred cCCceeecCCCcEEEEEEEeee-----cCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEE
Q psy14060 139 KIQPCRAFEQDQARFEVEFDGD-----PLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA 208 (283)
Q Consensus 139 ~~~~~~~~~g~~v~l~C~~~g~-----p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a 208 (283)
.++...+..|++++..|.+... ....+.|..++..++.. .+.... ...+.+.+.+........|.|..
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~-qy~~in-~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGS-QYRVIN-DTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCG-CEEEES-TTEEEEEESS--SSEEEEEEEEE
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChh-HcceeC-CeEEEEEEccCCCCCceEEEEEE
Confidence 3455678899999999998532 34578999988866553 444333 34467888888776666777763
No 384
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=90.78 E-value=1.9 Score=36.15 Aligned_cols=21 Identities=24% Similarity=0.605 Sum_probs=17.3
Q ss_pred cEEEEEEEeee-cC-CEEEEEeC
Q psy14060 150 QARFEVEFDGD-PL-PTIKWFRE 170 (283)
Q Consensus 150 ~v~l~C~~~g~-p~-~~~~W~k~ 170 (283)
.+.|.|.+.|. |. ..+.|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999995 54 46899999
No 385
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=90.37 E-value=0.68 Score=28.82 Aligned_cols=47 Identities=15% Similarity=0.039 Sum_probs=31.0
Q ss_pred cEEEEEEEccCccceEEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEe
Q psy14060 65 SQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERK 118 (283)
Q Consensus 65 ~v~l~C~~~g~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n 118 (283)
.|.|.|.+ +..| .|+..... . .. ...+|.+......-.|.|.|.+.+
T Consensus 8 ~V~L~C~~--~tsi-~W~kG~~~-~-~~--~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 8 KVFLKCNG--ATNI-TWKKGKEI-L-EV--SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred eEEEEecC--CCcE-EEecCccc-c-cc--cccEEeccCcccCCCcceEecCcc
Confidence 69999965 2233 45542221 1 11 156788888888889999998876
No 386
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=90.28 E-value=0.49 Score=31.93 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=25.5
Q ss_pred EcCCCeEEEEEEEEe-eCC--CeeEEeeCCEEecCC
Q psy14060 248 INVGQLARFDAKISA-TKP--LDVYWLKVSSLSDVK 280 (283)
Q Consensus 248 v~~g~~v~L~C~~~g-~p~--~~v~W~~~g~~l~~~ 280 (283)
+.+|..+++.|.+.+ +|. .++.|+++...+..+
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~ 47 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSK 47 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceeccc
Confidence 478999999999975 454 479999987765543
No 387
>KOG0613|consensus
Probab=90.20 E-value=1.7 Score=42.45 Aligned_cols=134 Identities=10% Similarity=0.018 Sum_probs=78.0
Q ss_pred cCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEE
Q psy14060 139 KIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 218 (283)
Q Consensus 139 ~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 218 (283)
.+.......++...+.|.+.+.+-+.+.|+-+....... .....+..+.+....+.+.|+|...+..+.....
T Consensus 235 ~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~-------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~ 307 (1205)
T KOG0613|consen 235 APSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK-------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFK 307 (1205)
T ss_pred ccccccccchhheeeeEEeecCCCchHHHHhcchhhhcc-------cCCCccccccccCCccccceeeecccCCccccee
Confidence 334445555666777777776555556555443322211 1123356777777788889999988877766555
Q ss_pred EEEEEEeccCCCCCC------CCC---CeEEecCCceEEcCCCeEEEEEEEEeeCCCe-eEEeeCCEEecC
Q psy14060 219 ANLVVEEKRQGGRGG------VVP---PSFLTTISSAVINVGQLARFDAKISATKPLD-VYWLKVSSLSDV 279 (283)
Q Consensus 219 ~~l~v~~~~~~~~~~------~~~---p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~-v~W~~~g~~l~~ 279 (283)
..-.+.....-...+ ..+ |.+......+....+..+.+.|...+.+.|. +.|++++.....
T Consensus 308 v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~ 378 (1205)
T KOG0613|consen 308 VTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSE 378 (1205)
T ss_pred eeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccc
Confidence 443332211100000 111 2222223344567778899999999998886 999998765443
No 388
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=90.18 E-value=11 Score=32.28 Aligned_cols=121 Identities=17% Similarity=0.276 Sum_probs=72.3
Q ss_pred eeecCCCcEEEEEEEee--ec-CCEEEEEeCCEecCC-----------------CCCeEEEEe------CCEEEEEEcCC
Q psy14060 143 CRAFEQDQARFEVEFDG--DP-LPTIKWFREDFPITS-----------------SPDFQIHTF------STKSILIMRQV 196 (283)
Q Consensus 143 ~~~~~g~~v~l~C~~~g--~p-~~~~~W~k~~~~~~~-----------------~~~~~~~~~------~~~~~l~i~~~ 196 (283)
..+..|..+.|.|..+- .. -..+.|+--+.++.+ ...+.+... -..++|+|..+
T Consensus 274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka 353 (500)
T PHA02914 274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA 353 (500)
T ss_pred eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence 35666999999998863 22 246789876654431 112333222 12458999999
Q ss_pred CCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCe-EEEEEEEEee--CCCeeEEeeC
Q psy14060 197 FMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQL-ARFDAKISAT--KPLDVYWLKV 273 (283)
Q Consensus 197 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~-v~L~C~~~g~--p~~~v~W~~~ 273 (283)
....+|-|.|.+....-.....--|.|.. ..+. .-..+|.. -.+.|-+... .++++.|.-+
T Consensus 354 ~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d-----------~V~f-----~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvn 417 (500)
T PHA02914 354 HINNAGCYEAQAFMGKFKEECRHCFKVAD-----------HVFF-----KWNTEGDNETKVACYAAQYDMQPFSILWKSN 417 (500)
T ss_pred EEEcCCceEEEEecCcchhhhhhheEecc-----------EEEE-----EEEeccCceEEEEEEEEecccCCceeEEEEc
Confidence 99999999999976533333333333332 1111 11234433 4567987654 3457999999
Q ss_pred CEEecC
Q psy14060 274 SSLSDV 279 (283)
Q Consensus 274 g~~l~~ 279 (283)
|.....
T Consensus 418 GV~~~G 423 (500)
T PHA02914 418 GVSFGG 423 (500)
T ss_pred cEEecC
Confidence 876644
No 389
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=88.02 E-value=0.84 Score=30.83 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=22.8
Q ss_pred eEEcCCCeEEE-EEEE-EeeCCCeeEEeeC
Q psy14060 246 AVINVGQLARF-DAKI-SATKPLDVYWLKV 273 (283)
Q Consensus 246 ~~v~~g~~v~L-~C~~-~g~p~~~v~W~~~ 273 (283)
..+.+|+.+.+ .|.+ .|.|.+.|+|+.+
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~ 40 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETN 40 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCC
Confidence 45678888888 8887 4678889999986
No 390
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=87.82 E-value=0.6 Score=37.28 Aligned_cols=37 Identities=8% Similarity=0.048 Sum_probs=28.3
Q ss_pred EeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecc
Q psy14060 81 KITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYY 120 (283)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~ 120 (283)
.+.+..++++. .+..|.+.+...+++|.|+|......
T Consensus 24 ~l~gn~~~nIT---~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 24 PLSGNSYVNIT---ETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred ccCCCCeEEEc---cCceEEeeccccccCCceEEEEEEEe
Confidence 44555666666 45679999999999999999876553
No 391
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=86.71 E-value=6.6 Score=25.44 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=28.8
Q ss_pred CCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEE-eCCceeEEEEEE
Q psy14060 162 LPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE-NRGGKAKCSANL 221 (283)
Q Consensus 162 ~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~-n~~g~~~~~~~l 221 (283)
.+.+.|+..+..+.... ..+.......+|+|.+.|.|. +..-.......+
T Consensus 26 ~~~~~l~~~~~k~~~~~----------~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i 76 (80)
T PF05790_consen 26 KPSLFLENPGKKSLETK----------KLVSTFTPTTEDSGTWVCTASDNEPKERESKIEI 76 (80)
T ss_dssp CEEEEEECSSCEEEEES----------SEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEE
T ss_pred ChhheeeccCccccccc----------eEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEE
Confidence 35677766554432211 125556677899999999994 433333333333
No 392
>PHA03052 Hypothetical protein; Provisional
Probab=83.94 E-value=5.1 Score=24.78 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=26.6
Q ss_pred CceEEcCCCeEEEEEEEEeeC---CCeeEEeeCCEEe
Q psy14060 244 SSAVINVGQLARFDAKISATK---PLDVYWLKVSSLS 277 (283)
Q Consensus 244 ~~~~v~~g~~v~L~C~~~g~p---~~~v~W~~~g~~l 277 (283)
....+..|..++|.|.+.-.+ .+.+-|.-||...
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 456788999999999996322 2368899999988
No 393
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=83.65 E-value=1.3 Score=30.17 Aligned_cols=36 Identities=11% Similarity=0.190 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEeccee
Q psy14060 85 TETTEMEHKGKIQERVVDASELDDDGYYAITERKYYAL 122 (283)
Q Consensus 85 ~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~ 122 (283)
..++.++. ....|.|..+++.|+|.|.-++++..|.
T Consensus 61 n~r~~F~~--enlaLlIkaAq~qDSG~Y~LEvT~~sG~ 96 (108)
T PF11465_consen 61 NNRFNFTS--ENLALLIKAAQPQDSGLYCLEVTNESGK 96 (108)
T ss_dssp HHHEEEET--TTTEEEESS-SGGG-EEEEEEEEETTSC
T ss_pred cceEeeec--cCceEEEeecCcccCceEEEEEEcCCCc
Confidence 34555554 4568999999999999999999998773
No 394
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=82.82 E-value=1.6 Score=29.41 Aligned_cols=22 Identities=9% Similarity=0.228 Sum_probs=18.4
Q ss_pred CeEEEEEEE-EeeCCCeeEEeeC
Q psy14060 252 QLARFDAKI-SATKPLDVYWLKV 273 (283)
Q Consensus 252 ~~v~L~C~~-~g~p~~~v~W~~~ 273 (283)
....+.|.+ .|.|.+.|+|+++
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~ 38 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETT 38 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeC
Confidence 456789998 5789999999997
No 395
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=82.24 E-value=6 Score=26.07 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=26.7
Q ss_pred CCCeEEecCCceEE--cCC--CeEEEEEEEEeeCCCeeEEeeCCEEe
Q psy14060 235 VPPSFLTTISSAVI--NVG--QLARFDAKISATKPLDVYWLKVSSLS 277 (283)
Q Consensus 235 ~~p~~~~~~~~~~v--~~g--~~v~L~C~~~g~p~~~v~W~~~g~~l 277 (283)
.++.++.+.....+ ..+ ....|.+.+.+. ...+.||.||+.+
T Consensus 9 ~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~ 54 (89)
T PF06832_consen 9 SPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPL 54 (89)
T ss_pred CCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEc
Confidence 35566655544333 222 255666667665 4589999999998
No 396
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=81.96 E-value=2.6 Score=30.09 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=15.0
Q ss_pred EEEEEccCCCCCCeEEEEEEEecce
Q psy14060 97 QERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 97 ~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
.+|.+.....- .|+|+|.+.....
T Consensus 86 aSL~~~~~~a~-~GnYTCeVt~~~~ 109 (130)
T PF08204_consen 86 ASLKMDKSDAV-EGNYTCEVTELSR 109 (130)
T ss_dssp --EEEEHHHHH--EEEEEEEEETTE
T ss_pred EEEEEcchhcc-ccceEEEEEecCC
Confidence 34777764333 8999999877655
No 397
>PHA03042 CD47-like protein; Provisional
Probab=81.48 E-value=6.8 Score=31.66 Aligned_cols=56 Identities=5% Similarity=-0.080 Sum_probs=33.7
Q ss_pred cEEEEEEEccCc-----cce-EEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 65 SQQVQKEKKGDK-----EIV-RKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 65 ~v~l~C~~~g~~-----~i~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
++.+.|.+...- ++. +|.-.++........+..+|.+.. ...=.|+|+|++.+...
T Consensus 33 TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~aSL~~~f-~~~l~GNYTCEv~~l~n 94 (286)
T PHA03042 33 TIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNTSSLKFNF-SKNLSGNYTCEAINKFN 94 (286)
T ss_pred eEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcceEEEEec-cccCCCceeEEEeeccc
Confidence 699999997532 333 555444433333222456666654 33458999999877643
No 398
>KOG1480|consensus
Probab=80.62 E-value=0.29 Score=44.90 Aligned_cols=134 Identities=13% Similarity=0.199 Sum_probs=75.4
Q ss_pred CCeEEecCCceeecCCCcEEEEEEEeeecCCE----EEEEeCCEecCC---C--CCeEEEEeCCEEEEEEcCCCCCCCE-
Q psy14060 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT----IKWFREDFPITS---S--PDFQIHTFSTKSILIMRQVFMEDSG- 202 (283)
Q Consensus 133 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~----~~W~k~~~~~~~---~--~~~~~~~~~~~~~l~i~~~~~~d~G- 202 (283)
-|.|+..+.+..+..+.++.+.|.+...+... -.|..+...... . ..... ....+.|....-++.|
T Consensus 24 l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~----~~~si~Isr~~v~~~~~ 99 (909)
T KOG1480|consen 24 LPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGV----REVSIDISRQQVETSGG 99 (909)
T ss_pred cceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeE----EeeeeeeehhhhhcccC
Confidence 45677778888899999999999987544432 245554332211 0 00000 0112333332222222
Q ss_pred --EEE--EEEEeCCceeEEE-EEEEEEeccCCCCCCCCCCeEEecCCceEEcCCCeEEEEEEE-EeeCCCeeEEeeCCEE
Q psy14060 203 --VFA--VIAENRGGKAKCS-ANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKI-SATKPLDVYWLKVSSL 276 (283)
Q Consensus 203 --~Y~--C~a~n~~g~~~~~-~~l~v~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~g~~ 276 (283)
-|. |.+....|...+. +.+.+.. ....|...+....|..+..+.|.|.. .+.|...++|++++..
T Consensus 100 ~~d~~cQc~a~~~~g~~~s~~a~vr~ay---------~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~ 170 (909)
T KOG1480|consen 100 PEDYWCQCVAWSDDGTVKSRKATVRIAY---------LRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVV 170 (909)
T ss_pred ccceeeeeeeecCCCcchhhhHHHHHHH---------HHHhhccChhhheecccccccccccCcccchhhhhhccccCCC
Confidence 354 5566655622111 1111111 12345556667788889999999876 4667778999999987
Q ss_pred ecC
Q psy14060 277 SDV 279 (283)
Q Consensus 277 l~~ 279 (283)
++.
T Consensus 171 ~~p 173 (909)
T KOG1480|consen 171 IDP 173 (909)
T ss_pred CCc
Confidence 765
No 399
>KOG4597|consensus
Probab=78.29 E-value=1.8 Score=37.67 Aligned_cols=62 Identities=13% Similarity=0.107 Sum_probs=42.7
Q ss_pred eeecCcEEEEEEEccCc--cce--EEeecCCCEEEE--------EcCCEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 60 IHTAKSQQVQKEKKGDK--EIV--RKITATETTEME--------HKGKIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 60 v~~g~~v~l~C~~~g~~--~i~--~~~~~~~~~~~~--------~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
|-.+++..+.|-+.|.+ .++ +.+....++.+. ....+..|.|-+....|+|.|+|.+.+..+
T Consensus 208 vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g 281 (560)
T KOG4597|consen 208 VGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAG 281 (560)
T ss_pred cccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccc
Confidence 44566799999999988 444 212222222221 112467899999999999999999988877
No 400
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=75.82 E-value=3.2 Score=27.91 Aligned_cols=22 Identities=9% Similarity=0.235 Sum_probs=18.2
Q ss_pred CeEEEEEEEE-eeCCCeeEEeeC
Q psy14060 252 QLARFDAKIS-ATKPLDVYWLKV 273 (283)
Q Consensus 252 ~~v~L~C~~~-g~p~~~v~W~~~ 273 (283)
..+.+.|.+. |.|.+.|+|+++
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~ 38 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSST 38 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcC
Confidence 4578899886 678889999997
No 401
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=74.33 E-value=23 Score=23.62 Aligned_cols=58 Identities=12% Similarity=-0.044 Sum_probs=36.1
Q ss_pred eeecCcEEEEEEEc-cCccceEEeecCCCEEEEEcCCEEEEEEccCCCCCCeEEEEEEEec
Q psy14060 60 IHTAKSQQVQKEKK-GDKEIVRKITATETTEMEHKGKIQERVVDASELDDDGYYAITERKY 119 (283)
Q Consensus 60 v~~g~~v~l~C~~~-g~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 119 (283)
|..|+++.+.|... ..|+.......-.+..+....++..+.|.|++. | ..-.|.+.-.
T Consensus 15 V~~G~Sv~VNCStsC~~p~~~GLET~L~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~ 73 (91)
T PF03921_consen 15 VPPGGSVWVNCSTSCPQPEKIGLETSLSKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCS 73 (91)
T ss_dssp EETTEEEEEEEEESSSS-SEEEEESSSEEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEET
T ss_pred ECCCCCEEEEEcCCCCCCCcceEEEecCCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcC
Confidence 56688999999986 333332222333444555555688899999985 5 4667876543
No 402
>PHA03052 Hypothetical protein; Provisional
Probab=74.25 E-value=8 Score=23.95 Aligned_cols=34 Identities=3% Similarity=0.020 Sum_probs=26.1
Q ss_pred CceeecCCCcEEEEEEEe-ee--cCCEEEEEeCCEec
Q psy14060 141 QPCRAFEQDQARFEVEFD-GD--PLPTIKWFREDFPI 174 (283)
Q Consensus 141 ~~~~~~~g~~v~l~C~~~-g~--p~~~~~W~k~~~~~ 174 (283)
..+.+..|..+++.|.+. |. ..+.+.|.-|+..+
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 556788899999999995 32 34568898888777
No 403
>PHA03283 envelope glycoprotein E; Provisional
Probab=71.98 E-value=75 Score=28.55 Aligned_cols=27 Identities=7% Similarity=0.009 Sum_probs=23.1
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 95 KIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
....|.|.+++.+++|.|+-..++..+
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~ 158 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGM 158 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCc
Confidence 456799999999999999998887655
No 404
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=71.82 E-value=25 Score=23.03 Aligned_cols=55 Identities=13% Similarity=0.294 Sum_probs=33.9
Q ss_pred cEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeE
Q psy14060 150 QARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK 216 (283)
Q Consensus 150 ~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 216 (283)
...|.+.+.+. ...+.||-|+..+...... ..+.+. ....|.|+-.+....|...
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~--------~~~~~~---~~~~G~h~l~vvD~~G~~~ 85 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPG--------HQLFWQ---PDRPGEHTLTVVDAQGRSA 85 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCCC--------CeEEeC---CCCCeeEEEEEEcCCCCEE
Confidence 45666667665 5599999999998432211 112222 2356888888776666544
No 405
>PHA03189 UL14 tegument protein; Provisional
Probab=71.02 E-value=44 Score=27.65 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=19.4
Q ss_pred CCCCCCCEEEEEEEEeCCceeEEEEEEEE
Q psy14060 195 QVFMEDSGVFAVIAENRGGKAKCSANLVV 223 (283)
Q Consensus 195 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 223 (283)
++..+.+|.|.|+..|..........+.|
T Consensus 139 ~v~t~taG~Y~CvLrN~tHglv~~rf~iv 167 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGLVLQRFVIV 167 (348)
T ss_pred EEEecccceEEEEeccccceeeeEEeeee
Confidence 35567899999999987655444433333
No 406
>PHA03283 envelope glycoprotein E; Provisional
Probab=70.14 E-value=83 Score=28.29 Aligned_cols=82 Identities=16% Similarity=0.257 Sum_probs=50.1
Q ss_pred EEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEEEEeccCCCCCCCCCC------------eEEec-CCceEEcCCCeEE
Q psy14060 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPP------------SFLTT-ISSAVINVGQLAR 255 (283)
Q Consensus 189 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~p------------~~~~~-~~~~~v~~g~~v~ 255 (283)
..|.|.+++.+++|.|+--.++..+.....+.+.|...... +.+ .|| .|... -.......|+++.
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~-~~~-~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~ 211 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQ-PQT-PPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFD 211 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcC-CCC-CCCCccccCCccCCceEEEecceeEEecCCCcee
Confidence 46999999999999999998887775555566666542111 101 111 11111 1233457899988
Q ss_pred EEEEEEeeC--C---CeeEEee
Q psy14060 256 FDAKISATK--P---LDVYWLK 272 (283)
Q Consensus 256 L~C~~~g~p--~---~~v~W~~ 272 (283)
+.-...... . .+|.|++
T Consensus 212 lsi~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 212 LSVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred EeEEEeeccCCCCceEEEEEEE
Confidence 866554321 2 2689987
No 407
>PHA03189 UL14 tegument protein; Provisional
Probab=68.77 E-value=17 Score=30.01 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=17.7
Q ss_pred EEEEEccCCCCCCeEEEEEEEecce
Q psy14060 97 QERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 97 ~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
.+|++ ++..+-+|.|.|...|...
T Consensus 134 ltLtF-~v~t~taG~Y~CvLrN~tH 157 (348)
T PHA03189 134 LTLTF-RVSTSTAGMYECVLRNETH 157 (348)
T ss_pred EEEEE-EEEecccceEEEEeccccc
Confidence 34444 4677889999999988754
No 408
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=67.42 E-value=16 Score=24.15 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=24.8
Q ss_pred CceEEcCCCeEEEEEEEEee-----CCCeeEEeeCCEEecC
Q psy14060 244 SSAVINVGQLARFDAKISAT-----KPLDVYWLKVSSLSDV 279 (283)
Q Consensus 244 ~~~~v~~g~~v~L~C~~~g~-----p~~~v~W~~~g~~l~~ 279 (283)
....+..|..++..|..... ....+.|..|+..+..
T Consensus 11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~ 51 (89)
T PF06328_consen 11 PSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG 51 (89)
T ss_dssp SSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC
T ss_pred CCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh
Confidence 34567899999999998632 3336999998886544
No 409
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=63.26 E-value=8.7 Score=32.87 Aligned_cols=43 Identities=16% Similarity=-0.007 Sum_probs=29.6
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEecceeeeeeccCCCCCCeEE
Q psy14060 95 KIQERVVDASELDDDGYYAITERKYYALSDLSEQKPAKPPVFT 137 (283)
Q Consensus 95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~p~~~ 137 (283)
..+.+.+.|++.+|.|.|.|...-.....-...+.+...|.+.
T Consensus 79 keYsf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVmPKId 121 (500)
T PHA02914 79 KEYSFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKAPKID 121 (500)
T ss_pred ceeEEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEcccee
Confidence 4678899999999999999977654443333344455566553
No 410
>KOG0200|consensus
Probab=62.92 E-value=49 Score=30.75 Aligned_cols=111 Identities=13% Similarity=0.073 Sum_probs=59.5
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEecceeeeeeccCCCCCCeEEe-cCCceeecCCCcEEEEEEEeeecCCEEEEEeCCEe
Q psy14060 95 KIQERVVDASELDDDGYYAITERKYYALSDLSEQKPAKPPVFTK-KIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFP 173 (283)
Q Consensus 95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~ 173 (283)
....+.+..+...|.|.|+|.+.+........ -.....+.+.. .+.......+....+ +...+.+.+.|......
T Consensus 11 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 86 (609)
T KOG0200|consen 11 NHWFLIIDSVVPGDKGFYTCLVSNINLIISLD-DIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKWGTNLEI 86 (609)
T ss_pred ccceEEEEEEEecCCccEEEEEecCceeeEee-cccCcccccccCCCCCcceeeccccee---eeecCCCcceeeeeecc
Confidence 34567777888999999999998821111111 11111111221 122233344444444 33334666777654321
Q ss_pred cC----CCC-C-----------eEEEEeCCEEEEEEcCCCCCCCEEEEEEEEe
Q psy14060 174 IT----SSP-D-----------FQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 210 (283)
Q Consensus 174 ~~----~~~-~-----------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 210 (283)
.. ... . .+.. ......+.+.++...+.+.|.|...+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 87 ECEDGLFEYKTKKTLSFVEIEYNRLV-DGTFESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred cccccCcchhheeeeeeeeccccccc-cCceEeeeeeccChhhcceeeccCCC
Confidence 10 000 0 0001 23455788999999999999999865
No 411
>KOG1026|consensus
Probab=61.80 E-value=11 Score=35.50 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=46.6
Q ss_pred eeecCCCcEEEEEEEeeecCCEEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCceeEEEEEEE
Q psy14060 143 CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV 222 (283)
Q Consensus 143 ~~~~~g~~v~l~C~~~g~p~~~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 222 (283)
..+..+..+++.|...+.|.|.+.|+..+............ .......+. ++.|.+.|..+.......+.
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~--c~~~~~~~~--------~~~c~~E~~~~~~~~~v~~~ 271 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSL--CRSECEVLE--------NDLCIAENAVARSNPSILLV 271 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccccCCCccccc--ccccceeee--------chhhHHHHhhhhcCceeeeE
Confidence 35667889999999999999999999877655432210000 000011111 18899999888877666665
Q ss_pred EEe
Q psy14060 223 VEE 225 (283)
Q Consensus 223 v~~ 225 (283)
+..
T Consensus 272 ~~~ 274 (774)
T KOG1026|consen 272 VDL 274 (774)
T ss_pred Eec
Confidence 553
No 412
>PHA03286 envelope glycoprotein E; Provisional
Probab=60.72 E-value=1.2e+02 Score=26.79 Aligned_cols=85 Identities=14% Similarity=0.121 Sum_probs=50.4
Q ss_pred EEEEEEcCCCCCCCEEEEEEEEeCCceeE-EEEEEEEEeccC--C--CCCCCCCC----eEE-ecCCceEEcCCCeEEEE
Q psy14060 188 KSILIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQ--G--GRGGVVPP----SFL-TTISSAVINVGQLARFD 257 (283)
Q Consensus 188 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~~~--~--~~~~~~~p----~~~-~~~~~~~v~~g~~v~L~ 257 (283)
...|.|.+++.+.+|.|+--..|..+... ..+.+.|..... . ...+..|+ .|. .........+|+++.+.
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vS 205 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDAS 205 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEE
Confidence 34599999999999999999988866544 445666653211 1 11001111 111 12334456799998877
Q ss_pred EEEE--eeCC---CeeEEee
Q psy14060 258 AKIS--ATKP---LDVYWLK 272 (283)
Q Consensus 258 C~~~--g~p~---~~v~W~~ 272 (283)
-... .... .++.|++
T Consensus 206 v~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 206 VTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEEeecccCCCceEEEEEEE
Confidence 6554 1222 2799987
No 413
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=58.13 E-value=27 Score=21.45 Aligned_cols=21 Identities=14% Similarity=0.468 Sum_probs=12.7
Q ss_pred ecCCCcEEEEEEEeeecCCEEEEEe
Q psy14060 145 AFEQDQARFEVEFDGDPLPTIKWFR 169 (283)
Q Consensus 145 ~~~g~~v~l~C~~~g~p~~~~~W~k 169 (283)
+..|+.++|. |.+...++||+
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEE
Confidence 3456666664 53445789983
No 414
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=56.13 E-value=18 Score=31.97 Aligned_cols=82 Identities=21% Similarity=0.329 Sum_probs=14.0
Q ss_pred EEEEEcCCCCCCCEEEEEEEEeCCceeE-EEEEEEEEeccCCCCCCCCCCe-----------E-EecCCceEEcCCCeEE
Q psy14060 189 SILIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPS-----------F-LTTISSAVINVGQLAR 255 (283)
Q Consensus 189 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~~~~~~~~~~~p~-----------~-~~~~~~~~v~~g~~v~ 255 (283)
..|.|.+++.+|+|.|+-...+..+... ..+.+.|......+ ...+|. | +..........|+++.
T Consensus 89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~--~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~ 166 (439)
T PF02480_consen 89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDP--RTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFH 166 (439)
T ss_dssp -----------------------------------------------------------SEEEEEE--SEEE--TT--EE
T ss_pred CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCC--CCCCCCCCCCCcccccEEEEeccceEEecCCCcEE
Confidence 4599999999999999998877665543 33555555432110 001111 1 1223344567999998
Q ss_pred EEEEEEeeCC---C---eeEEee
Q psy14060 256 FDAKISATKP---L---DVYWLK 272 (283)
Q Consensus 256 L~C~~~g~p~---~---~v~W~~ 272 (283)
|.-....... + +|.|++
T Consensus 167 ~~v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 167 LSVHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp ---EEEEEESSS--EEEEEEEEE
T ss_pred EeEEEEeccCCCCCeeEEEEEEE
Confidence 8877643222 2 688987
No 415
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=56.06 E-value=20 Score=31.63 Aligned_cols=75 Identities=15% Similarity=0.182 Sum_probs=13.8
Q ss_pred EEEEEEccCCCCCCeEEEEEEEecceeee--eeccCCCC--------CCe------------EEecCCceeecCCCcEEE
Q psy14060 96 IQERVVDASELDDDGYYAITERKYYALSD--LSEQKPAK--------PPV------------FTKKIQPCRAFEQDQARF 153 (283)
Q Consensus 96 ~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~--~~~~~~~~--------~p~------------~~~~~~~~~~~~g~~v~l 153 (283)
...|.|.+++.+|+|.|+-...+..+... ...+.+.. +|. .+..........|+++.+
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~ 167 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHL 167 (439)
T ss_dssp ----------------------------------------------------------SEEEEEE--SEEE--TT--EE-
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEE
Confidence 45699999999999999998876655322 11122211 111 111223345677998888
Q ss_pred EEEEeeec---C---CEEEEEeC
Q psy14060 154 EVEFDGDP---L---PTIKWFRE 170 (283)
Q Consensus 154 ~C~~~g~p---~---~~~~W~k~ 170 (283)
.-.+.... . ..+.||.-
T Consensus 168 ~v~l~~~~~d~~~f~~~i~W~~~ 190 (439)
T PF02480_consen 168 SVHLQSEAHDDPPFSLEIDWYYM 190 (439)
T ss_dssp --EEEEEESSS--EEEEEEEEEE
T ss_pred eEEEEeccCCCCCeeEEEEEEEe
Confidence 77764322 1 36889863
No 416
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=54.14 E-value=65 Score=21.70 Aligned_cols=58 Identities=10% Similarity=0.102 Sum_probs=32.1
Q ss_pred cEEEEEEE-eeecCCEEEEEeC--CEe-c--CC--CCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCC
Q psy14060 150 QARFEVEF-DGDPLPTIKWFRE--DFP-I--TS--SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG 212 (283)
Q Consensus 150 ~v~l~C~~-~g~p~~~~~W~k~--~~~-~--~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 212 (283)
.+.-.|.+ .|+|...|+|.-+ |.. . .. ...+.+ .+.+.+......|.-..+|.+.+..
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV-----~S~y~lVPs~~~~gk~lTCvV~h~~ 87 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTV-----ISRYRLVPSREAHKQKLTCIVNYRN 87 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEE-----EEEEEEeECHHHcCCEeEEEEEecc
Confidence 45668874 7889999999743 211 0 00 001111 1224444555566678888887653
No 417
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=53.70 E-value=32 Score=29.10 Aligned_cols=21 Identities=10% Similarity=0.207 Sum_probs=17.1
Q ss_pred eEEEEEEEEeeCCC--eeEEeeC
Q psy14060 253 LARFDAKISATKPL--DVYWLKV 273 (283)
Q Consensus 253 ~v~L~C~~~g~p~~--~v~W~~~ 273 (283)
.++|.|.+.|.-+. .+.|.+|
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999995433 6889999
No 418
>PHA03286 envelope glycoprotein E; Provisional
Probab=51.65 E-value=84 Score=27.68 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=23.3
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 95 KIQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 95 ~~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
....|.|.|++..++|.|+-...|..+
T Consensus 125 ~~~~L~I~nAt~qnaGiYtly~rnd~~ 151 (492)
T PHA03286 125 RGKELTILNASSQNAGIYIRYSRNGTR 151 (492)
T ss_pred CCCceEEeeccccccceEEEEEcCCCC
Confidence 346799999999999999999888865
No 419
>PHA03112 IL-18 binding protein; Provisional
Probab=44.20 E-value=1.2e+02 Score=22.02 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=18.9
Q ss_pred CCCcEEEEEEEeee-cC-CEEEEEeCC
Q psy14060 147 EQDQARFEVEFDGD-PL-PTIKWFRED 171 (283)
Q Consensus 147 ~g~~v~l~C~~~g~-p~-~~~~W~k~~ 171 (283)
.++++.|.|..-++ |. .-+.|...+
T Consensus 37 ~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 37 ETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred CCCEEEEEEECccCCCCceEEEEEcCC
Confidence 47899999999765 54 357899654
No 420
>PHA03240 envelope glycoprotein M; Provisional
Probab=41.96 E-value=28 Score=27.10 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=19.3
Q ss_pred EEEeCCEEEEEEcCCCCCCCEEEEE
Q psy14060 182 IHTFSTKSILIMRQVFMEDSGVFAV 206 (283)
Q Consensus 182 ~~~~~~~~~l~i~~~~~~d~G~Y~C 206 (283)
+......++|.|.++..+|.|+|.-
T Consensus 98 i~y~C~NstL~i~~vn~sd~~nYcr 122 (258)
T PHA03240 98 ILYECHNSTLIIAHLNLSDAGEYCR 122 (258)
T ss_pred eEEEeccceEEEEEEeecCcchhhh
Confidence 4444556689999999999999853
No 421
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=40.88 E-value=1.1e+02 Score=20.43 Aligned_cols=80 Identities=13% Similarity=0.037 Sum_probs=47.8
Q ss_pred EecCCceeecCCCcEEEEEEEeeecCC-EEEEEeCCEecCCCCCeEEEEeCCEEEEEEcCCCCCCCEEEEEEEEeCCcee
Q psy14060 137 TKKIQPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA 215 (283)
Q Consensus 137 ~~~~~~~~~~~g~~v~l~C~~~g~p~~-~~~W~k~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 215 (283)
...+....+..|+++.+.|+.+. +.| .+.|.-.- .+........-..+.+.+++. | ....|.+.=.....
T Consensus 7 ~v~P~~~vV~~G~Sv~VNCStsC-~~p~~~GLET~L------~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~ 77 (91)
T PF03921_consen 7 RVSPEEPVVPPGGSVWVNCSTSC-PQPEKIGLETSL------SKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQS 77 (91)
T ss_dssp EEESSEEEEETTEEEEEEEEESS-SS-SEEEEESSS------EEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEE
T ss_pred EEECCccEECCCCCEEEEEcCCC-CCCCcceEEEec------CCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEE
Confidence 34567788999999999999865 444 44442211 111122222344577777775 4 56678887554455
Q ss_pred EEEEEEEEEe
Q psy14060 216 KCSANLVVEE 225 (283)
Q Consensus 216 ~~~~~l~v~~ 225 (283)
..++.++|..
T Consensus 78 ~~~~~ItVY~ 87 (91)
T PF03921_consen 78 SASANITVYK 87 (91)
T ss_dssp EEEEEEEEEB
T ss_pred EeEEeeEEeC
Confidence 6677888774
No 422
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=35.62 E-value=98 Score=23.16 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=23.7
Q ss_pred EEEEcCCCCCCCEEEEEEEEeCCceeEEEEEE
Q psy14060 190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANL 221 (283)
Q Consensus 190 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 221 (283)
-|.|.+...+|+|.|.-+++-.......-+.+
T Consensus 125 lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~ 156 (161)
T PF01688_consen 125 LLRIRNPRPEDSGIYYLRVWLDGANKADVFRL 156 (161)
T ss_pred EEEeCCCCcccceEEEEEEEECCCCCCcEEEE
Confidence 48999999999999999987655444433333
No 423
>PHA03281 envelope glycoprotein E; Provisional
Probab=33.30 E-value=3.8e+02 Score=24.52 Aligned_cols=81 Identities=14% Similarity=0.235 Sum_probs=47.9
Q ss_pred EEEEEcCCCCCCCEEEEEEEEeCCceeE-EEEEEEEEeccCCCCCCCCCCeEEec----------CCceEEcCCCeEEEE
Q psy14060 189 SILIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTT----------ISSAVINVGQLARFD 257 (283)
Q Consensus 189 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~~~~~~~~~~~p~~~~~----------~~~~~v~~g~~v~L~ 257 (283)
..|.|.+++.+.+|.|+--.+...|... +.+.+.|..... .. ..+|.+... -......+|+++.+.
T Consensus 298 ~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~-~r--ip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~ 374 (642)
T PHA03281 298 GVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEE-NH--IDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLA 374 (642)
T ss_pred CeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcc-cC--CCCCCccccccCceEEEeccceeEecCCCeeEEE
Confidence 3699999999999999988776655433 345556653210 00 011111111 123345789998887
Q ss_pred EEEEee--CCC---eeEEee
Q psy14060 258 AKISAT--KPL---DVYWLK 272 (283)
Q Consensus 258 C~~~g~--p~~---~v~W~~ 272 (283)
-..... ..+ ++.|++
T Consensus 375 v~L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 375 MHLQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred EEEeeeccCCCceeEEEEEE
Confidence 766432 222 799987
No 424
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=32.61 E-value=76 Score=23.72 Aligned_cols=24 Identities=13% Similarity=0.075 Sum_probs=20.2
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEe
Q psy14060 95 KIQERVVDASELDDDGYYAITERK 118 (283)
Q Consensus 95 ~~~~L~i~~~~~~D~G~Y~C~a~n 118 (283)
....|.|.+.+++|+|.|.-...-
T Consensus 122 ~~~lL~i~~p~~~dsG~Y~lRV~l 145 (161)
T PF01688_consen 122 NGVLLRIRNPRPEDSGIYYLRVWL 145 (161)
T ss_pred cceEEEeCCCCcccceEEEEEEEE
Confidence 456799999999999999997653
No 425
>PHA03281 envelope glycoprotein E; Provisional
Probab=30.74 E-value=4.1e+02 Score=24.36 Aligned_cols=26 Identities=12% Similarity=-0.014 Sum_probs=21.6
Q ss_pred EEEEEEccCCCCCCeEEEEEEEecce
Q psy14060 96 IQERVVDASELDDDGYYAITERKYYA 121 (283)
Q Consensus 96 ~~~L~i~~~~~~D~G~Y~C~a~n~~~ 121 (283)
...|.|.+++..++|.|+-..+...+
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G 322 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDG 322 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCC
Confidence 34789999999999999987776654
No 426
>PHA03282 envelope glycoprotein E; Provisional
Probab=30.29 E-value=4e+02 Score=23.87 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=23.8
Q ss_pred EEEEcCCCCCCCEEEEEEEEeCCce--eEEEEEEEEE
Q psy14060 190 ILIMRQVFMEDSGVFAVIAENRGGK--AKCSANLVVE 224 (283)
Q Consensus 190 ~l~i~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~v~ 224 (283)
+|.|.++..+|+|.|+-.+...... +...+.|.|.
T Consensus 125 tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 125 TLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred eEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 5999999999999999886433222 2333455554
No 427
>PF09085 Adhes-Ig_like: Adhesion molecule, immunoglobulin-like; InterPro: IPR015169 This domain is found in mucosal vascular addressin cell adhesion molecule 1 proteins (MAdCAM-1). These are cell adhesion molecules expressed on the endothelium in mucosa that guide the specific homing of lymphocytes into mucosal tissues. MAdCAM-1 belongs to a subclass of the immunoglobulin superfamily (IgSF), the members of which are ligands for integrins []. The crystal structure of this domain has been reported; it adopts an immunoglobulin-like beta-sandwich structure, with seven strands arranged in two beta-sheets in a Greek-key topology [, ].; GO: 0007155 cell adhesion, 0016020 membrane; PDB: 1GSM_A 1BQS_A.
Probab=27.01 E-value=1.4e+02 Score=20.16 Aligned_cols=32 Identities=6% Similarity=-0.097 Sum_probs=20.3
Q ss_pred EcCCCeEEEEEEEEee-C-CC---eeEEeeCCEEecC
Q psy14060 248 INVGQLARFDAKISAT-K-PL---DVYWLKVSSLSDV 279 (283)
Q Consensus 248 v~~g~~v~L~C~~~g~-p-~~---~v~W~~~g~~l~~ 279 (283)
+..|....+.|.+... | .| ++.|+.+++.|..
T Consensus 13 LVpg~dqevaCTAhnVtP~~p~~LSfslllGdqeLeg 49 (110)
T PF09085_consen 13 LVPGRDQEVACTAHNVTPADPDALSFSLLLGDQELEG 49 (110)
T ss_dssp B-TT--SEEEEEEEEEB--STTTEEEEEEETTEE-TT
T ss_pred hccCCCceeeeeeccccCCCCCeEEeeeeeCceeecc
Confidence 4578788889998642 2 12 7999999998864
No 428
>PF10285 Luciferase_cat: Luciferase catalytic domain; InterPro: IPR018804 This entry represents the catalytic domain of dinoflagellate luciferase. Luciferase is involved in catalysing the light emitting reaction in bioluminescence. The structure of this domain has been solved []. The core part of the domain is a 10 stranded beta barrel that is structurally similar to lipocalins and FABP []. ; PDB: 1VPR_A.
Probab=25.06 E-value=1.2e+02 Score=23.79 Aligned_cols=43 Identities=14% Similarity=0.082 Sum_probs=28.4
Q ss_pred CCcccccCcceEEEEEcCCeeeeeeeEEEEeCCCCCCCCCcee
Q psy14060 11 LQPWQKKNILKSRTASSDRSGVSTEETKIIDGRKVSVPEPSAS 53 (283)
Q Consensus 11 ~~~~~~~~~~~~~~a~n~~g~~~~~~~l~v~~~~~~~~~p~~~ 53 (283)
..-|+..+....|+++-..|..+..+.+.|...|...+.|..+
T Consensus 199 rraf~~~~~mf~rq~tev~g~isfvfyvkvsndpes~~iplqs 241 (296)
T PF10285_consen 199 RRAFPRGGYMFLRQSTEVGGKISFVFYVKVSNDPESKPIPLQS 241 (296)
T ss_dssp EEEEEETTEEEEEEEEEETTEEEEEEEEEEES---S-------
T ss_pred ccccccCceEEEeehhhhCceEEEEEEEEecCCCCCCcccccc
Confidence 3457888899999999999999999999998887766555444
No 429
>PHA03282 envelope glycoprotein E; Provisional
Probab=23.43 E-value=83 Score=27.88 Aligned_cols=25 Identities=8% Similarity=0.033 Sum_probs=21.1
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEec
Q psy14060 95 KIQERVVDASELDDDGYYAITERKY 119 (283)
Q Consensus 95 ~~~~L~i~~~~~~D~G~Y~C~a~n~ 119 (283)
+...|.+.|+..+++|.|-|+..-.
T Consensus 331 n~VdL~F~nAp~saSGLYVfVl~yN 355 (540)
T PHA03282 331 HTVNLQLRDASEASGGLYVCVVYVN 355 (540)
T ss_pred CccceEecCCCcccCceEEEEEEEC
Confidence 4568999999999999999976543
Done!