RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14060
(283 letters)
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 114 bits (286), Expect = 3e-31
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS--PDFQIHTFSTKS 189
+ P FT+ +Q E A FE G P+P + WFR+ I++S P QI ++
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVIN 249
L + V +SG +++ A N G+A +A L+V+ + PP+F+ + S +
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAET-------APPNFVQRLQSMTVR 116
Query: 250 VGQLARFDAKISATKPLDVYWLK 272
G R +++ V + +
Sbjct: 117 QGSQVRLQVRVTGIPTPVVKFYR 139
Score = 100 bits (251), Expect = 4e-26
Identities = 32/97 (32%), Positives = 52/97 (53%)
Query: 128 QKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST 187
+ PP F +++Q + Q R +V G P P +K++R+ I SS DFQI
Sbjct: 98 KAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGD 157
Query: 188 KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
L++ + + EDSG ++V A N G+A +A L+V+
Sbjct: 158 LYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 35.1 bits (81), Expect = 0.011
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 234 VVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
P+F + S V+ G A F+A IS +V W +
Sbjct: 3 TQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFR 41
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 112 bits (281), Expect = 2e-30
Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 13/145 (8%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
+ P K+++ + A+ + G PLP IKW+R + S +++ +
Sbjct: 5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT 64
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSF---LTTISSAV 247
L + ED GV+ IA N G+ + S+ L+++ P F
Sbjct: 65 LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA----------TPQFHPGYPLKEKYY 114
Query: 248 INVGQLARFDAKISATKPLDVYWLK 272
VG R + W
Sbjct: 115 GAVGSTLRLHVMYIGRPVPAMTWFH 139
Score = 85.5 bits (212), Expect = 2e-20
Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 5/152 (3%)
Query: 80 RKITATETTEMEHKGKIQERVVDASELDDDGYYAITER----KYYALSDLSEQKPAKPPV 135
+++ + +M G+ V E +D+G Y + S L Q +
Sbjct: 46 KELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHP 105
Query: 136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQ 195
+ R V + G P+P + WF + +S + I + L+M+
Sbjct: 106 GYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKN 165
Query: 196 VFME-DSGVFAVIAENRGGKAKCSANLVVEEK 226
V + +G + V N G ++ +++K
Sbjct: 166 VQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 114 bits (287), Expect = 2e-30
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 133 PPVFTKKIQPCRAFEQDQ-ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
PP F KK++P R +QD+ R+E + G P + W++++ I S F++ + ++L
Sbjct: 98 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVL 157
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
M + +EDSG + A N G A S +L V+E PP F G
Sbjct: 158 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE----------PPVFRKKPHPVETLKG 207
Query: 252 QLARFDAKISATKPLDVYWLK 272
+ ++ T P V W K
Sbjct: 208 ADVHLECELQGTPPFQVSWHK 228
Score = 112 bits (282), Expect = 1e-29
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 11/141 (7%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
PP F K + F+ G I W +++ I ++++ + L
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTI-SSAVINVG 251
+ +V D+G + A N GK CSA L V+E PP F+ + S ++
Sbjct: 65 VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE----------PPRFIKKLEPSRIVKQD 114
Query: 252 QLARFDAKISATKPLDVYWLK 272
+ R++ KI + + V W K
Sbjct: 115 EHTRYECKIGGSPEIKVLWYK 135
Score = 92.5 bits (230), Expect = 3e-22
Identities = 21/92 (22%), Positives = 38/92 (41%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
PPVF KK P + E E G P + W ++ + S ++I + + + +
Sbjct: 192 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIH 251
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
+ V D G + A N G C ++ ++
Sbjct: 252 ILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283
Score = 41.3 bits (97), Expect = 2e-04
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 232 GGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
G + PP F S + +G+ F ++ T P+ + W K
Sbjct: 1 GAMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAK 41
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 110 bits (277), Expect = 7e-30
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPI-TSSPDFQIHTFST-K 188
A P F ++++ Q A + G P P +KW+R+ I ++I F
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVI 248
LI+ V +D+ V+ V A N+GG +A+L VE + + P L + +
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAK-----IHLPKTLEGMGAVHA 116
Query: 249 NVGQLARFDAKISATKPLDVYWLK 272
G++ S + W K
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQK 140
Score = 94.4 bits (235), Expect = 1e-23
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Query: 127 EQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF- 185
P + + A + ++ F G P P I W + I ++ +Q+
Sbjct: 98 VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR 157
Query: 186 STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
S S++ V +D+G + V A+NR G + + L V +
Sbjct: 158 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 197
Score = 35.5 bits (82), Expect = 0.009
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 233 GVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
G + P F + + + A K++ V W +
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYR 40
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 105 bits (263), Expect = 7e-29
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
Query: 130 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST-K 188
+ P ++IQ + A F V G P P +W++ I S +
Sbjct: 2 SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 61
Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
L++R V EDS V A N G+ A L+V+ K
Sbjct: 62 CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 33.4 bits (77), Expect = 0.016
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 236 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
P I S + G A F ++ + W K
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYK 41
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 104 bits (262), Expect = 1e-28
Identities = 27/97 (27%), Positives = 47/97 (48%)
Query: 129 KPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK 188
K K + +E + ARF + DG+P+PT+ W R+ +++S Q+ T K
Sbjct: 10 KTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK 69
Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
S + V D G ++V+ EN GK + L +++
Sbjct: 70 STFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106
Score = 33.1 bits (76), Expect = 0.025
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 235 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
+ LT S + G+ ARF V WL+
Sbjct: 13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLR 50
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 110 bits (277), Expect = 1e-27
Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 10/140 (7%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
PPVF KK P + E E G P + W ++ + S ++I + + + +
Sbjct: 384 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIH 443
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ 252
+ V D G + A N G C ++ ++ PP F+ +S VG+
Sbjct: 444 ILNVDSADIGEYQCKASNDVGSDTCVGSITLKA----------PPRFVKKLSDISTVVGE 493
Query: 253 LARFDAKISATKPLDVYWLK 272
+ A I +P+ V W K
Sbjct: 494 EVQLQATIEGAEPISVAWFK 513
Score = 108 bits (272), Expect = 7e-27
Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
+PP F + ++ A + + + DG P I W++E + S+P +++ + + L
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
++ +V D G + AEN G SA LV++E++ +PPSF + +G
Sbjct: 64 VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERK-------LPPSFARKLKDVHETLG 116
Query: 252 QLARFDAKISATKPLDVYWLK 272
F+ +I+ ++PL V W K
Sbjct: 117 FPVAFECRINGSEPLQVSWYK 137
Score = 102 bits (255), Expect = 1e-24
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 11/141 (7%)
Query: 133 PPVFTKKIQPCR-AFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
PP F KK++P R + + R+E + G P + W++++ I S F++ + ++L
Sbjct: 290 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVL 349
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
M + +EDSG + A N G A S +L V+ PP F G
Sbjct: 350 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK----------EPPVFRKKPHPVETLKG 399
Query: 252 QLARFDAKISATKPLDVYWLK 272
+ ++ T P V W K
Sbjct: 400 ADVHLECELQGTPPFQVSWHK 420
Score = 101 bits (253), Expect = 2e-24
Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 7/148 (4%)
Query: 125 LSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHT 184
L ++ PP F +K++ FE +G + W+++ + + Q
Sbjct: 93 LVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSF 152
Query: 185 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTIS 244
+ L + Q G + A N G A SA L + E VPP F
Sbjct: 153 IHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHE-------VPPFFDLKPV 205
Query: 245 SAVINVGQLARFDAKISATKPLDVYWLK 272
S + +G+ F ++ T P+ + W K
Sbjct: 206 SVDLALGESGTFKCHVTGTAPIKITWAK 233
Score = 99.9 bits (249), Expect = 8e-24
Identities = 33/146 (22%), Positives = 58/146 (39%), Gaps = 11/146 (7%)
Query: 128 QKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST 187
+ PP F K + F+ G I W +++ I ++++
Sbjct: 192 SEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN 251
Query: 188 KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTIS-SA 246
+ L + +V D+G + A N GK CSA L V+E PP F+ + S
Sbjct: 252 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE----------PPRFIKKLEPSR 301
Query: 247 VINVGQLARFDAKISATKPLDVYWLK 272
++ + R++ KI + + V W K
Sbjct: 302 IVKQDEHTRYECKIGGSPEIKVLWYK 327
Score = 82.5 bits (204), Expect = 5e-18
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPI-TSSPDFQIHTFSTKSIL 191
PP F KK+ ++ + + +G ++ WF++ I S + I + L
Sbjct: 477 PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATL 536
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
+ ++G + +N G +C A L V E
Sbjct: 537 QFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570
Score = 30.5 bits (69), Expect = 0.65
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 232 GGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
G + PP F+ + +G+ K+ T + + W K
Sbjct: 1 GAMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYK 41
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 104 bits (260), Expect = 3e-27
Identities = 31/143 (21%), Positives = 49/143 (34%), Gaps = 5/143 (3%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF--STKS 189
PP FT+ A F + GDP P I W ++ +++ I S
Sbjct: 5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSV 64
Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVIN 249
+ I D ++ +A N G+ S L V + Q RG P+ V+
Sbjct: 65 LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRG---FPTIDMGPQLKVVE 121
Query: 250 VGQLARFDAKISATKPLDVYWLK 272
+ A S ++ W K
Sbjct: 122 RTRTATMLCAASGNPDPEITWFK 144
Score = 84.1 bits (208), Expect = 1e-19
Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 4/106 (3%)
Query: 127 EQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD---FQIH 183
+Q P P Q A G+P P I WF++ P+ +S + +
Sbjct: 102 DQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQL 161
Query: 184 TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQ 228
+ L + Q D G + +A N G ANL V +
Sbjct: 162 RSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKH 207
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 100 bits (250), Expect = 6e-27
Identities = 20/95 (21%), Positives = 32/95 (33%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
P T +++ R RF + P +KW+ + S S L
Sbjct: 7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTL 66
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
+ +DSG + + N G+A A L V
Sbjct: 67 EILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
Score = 34.2 bits (79), Expect = 0.008
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 236 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
P + S + GQ RF + + +V W
Sbjct: 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYH 44
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 99.4 bits (248), Expect = 1e-26
Identities = 23/101 (22%), Positives = 40/101 (39%)
Query: 126 SEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF 185
S PP F + +P R +A + G+P P + W + + +S
Sbjct: 6 SSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPAD 65
Query: 186 STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
+ L++ D+GV+ A N G+A +A + V E
Sbjct: 66 GAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEP 106
Score = 32.7 bits (75), Expect = 0.029
Identities = 10/38 (26%), Positives = 12/38 (31%)
Query: 235 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
PP FL + G A + P V W K
Sbjct: 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEK 49
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 99 bits (249), Expect = 3e-26
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 122 LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ 181
L +++E+KP P FTK I E ARF+ + +G P P + WF++D P+ S FQ
Sbjct: 30 LEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQ 89
Query: 182 I-HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRG 232
I + L + +V +D + A N G+A C+A L+VE + G G
Sbjct: 90 IDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEG 141
Score = 37.1 bits (86), Expect = 0.002
Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 199 EDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDA 258
S + I N+ V EEK V P F TI + G ARFD
Sbjct: 10 SGSSPTSPINANKVENEDAFLEEVAEEKPH------VKPYFTKTILDMEVVEGSAARFDC 63
Query: 259 KISATKPLDVYWLK 272
K+ +V W K
Sbjct: 64 KVEGYPDPEVMWFK 77
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 97.7 bits (244), Expect = 4e-26
Identities = 21/94 (22%), Positives = 38/94 (40%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
+ PV +Q A+F V+ G+P PT W ++ IT +++
Sbjct: 4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFF 63
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
L + + DSG++ +N G S L ++
Sbjct: 64 LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
Score = 33.0 bits (76), Expect = 0.024
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 235 VPPSFLTTISSAVINVGQLARFDAKISAT-KPLDVYWLK 272
P +T + ++ +A+F K + +P W K
Sbjct: 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRP-TAIWTK 42
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 97.0 bits (242), Expect = 1e-25
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 7/107 (6%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
P + + + + + G T W + I S ++ S L
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLT 66
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSF 239
+ E G + ++ EN+ G + NL V +K PP+
Sbjct: 67 ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD-------PPAG 106
Score = 39.2 bits (92), Expect = 2e-04
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 230 GRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
G G P + + G+ K++ T+P+ W+K
Sbjct: 1 GSSGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMK 43
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 97.0 bits (242), Expect = 1e-25
Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 8/112 (7%)
Query: 129 KPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK 188
+ P F K++ + FE F G+P P I WF++ I+ D
Sbjct: 4 GSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD 63
Query: 189 SI--LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPS 238
L ++D G + ++A N G+ C+ L+V+ G P S
Sbjct: 64 GTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG------PSS 109
Score = 31.2 bits (71), Expect = 0.12
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 236 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
P F + I G F +++ +YW K
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFK 44
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 95.1 bits (237), Expect = 4e-25
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
Query: 130 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF-STK 188
PP F + + E R + + G P P + W+ + S ++
Sbjct: 2 AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL 61
Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
LI V D+G +A +A+NR G+A + L V K
Sbjct: 62 HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 36.9 bits (86), Expect = 8e-04
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 232 GGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPLDVYWLK 272
G + PP F+ + I+ G+ R D K+S P DV W
Sbjct: 1 GAMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAP-DVSWYL 41
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 100 bits (250), Expect = 6e-25
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPIT-SSPDFQIHTF-STK 188
A P F ++++ Q A + G P P +KW+R+ I ++I F
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVI 248
LI+ V +D+ V+ V A N+GG +A+L VE + + P L + +
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAK-----IHLPKTLEGMGAVHA 116
Query: 249 NVGQLARFDAKISATKPLDVYWLK 272
G++ S + W K
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQK 140
Score = 82.9 bits (205), Expect = 1e-18
Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 15/165 (9%)
Query: 72 KKGDKEIV---RKITATETTEMEHKGKIQERVVDASELDDDGYY---AITER-KYYALSD 124
+ KEI+ K E H+ I DD Y A + +
Sbjct: 39 YRQGKEIIADGLKYRIQEFKGGYHQLIIAS-----VTDDDATVYQVRATNQGGSVSGTAS 93
Query: 125 LSEQKPAK--PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI 182
L + PAK P + + A + ++ F G P P I W + I ++ +Q+
Sbjct: 94 LEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQV 153
Query: 183 H-TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
T S S++ V +D+G + V A+NR G + + L V +
Sbjct: 154 IVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADV 198
Score = 31.7 bits (72), Expect = 0.20
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 233 GVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
G + P F + + + A K++ V W +
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYR 40
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 99.1 bits (247), Expect = 1e-24
Identities = 30/143 (20%), Positives = 50/143 (34%), Gaps = 5/143 (3%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF--STKS 189
+PP F K+ + A F + GDP P + W ++ + S I +
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVIN 249
+ I D V+ +A+N G+ A L V + Q G P+ V+
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSG---FPNIDMGPQLKVVE 121
Query: 250 VGQLARFDAKISATKPLDVYWLK 272
+ A S ++ W K
Sbjct: 122 RTRTATMLCAASGNPDPEITWFK 144
Score = 92.2 bits (229), Expect = 5e-22
Identities = 31/147 (21%), Positives = 45/147 (30%), Gaps = 8/147 (5%)
Query: 127 EQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS 186
+Q P+ P Q A G+P P I WF++ P+ S
Sbjct: 102 DQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQL 161
Query: 187 TKSILIMRQVFMEDSGVFAVIAENRGG-KAKCSANLVVEEKRQGGRGGVVPPSFLTTISS 245
L + D G + +A N G + ANL V + V P F S
Sbjct: 162 RSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQN-------VAPRFSILPMS 214
Query: 246 AVINVGQLARFDAKISATKPLDVYWLK 272
I G + V W++
Sbjct: 215 HEIMPGGNVNITCVAVGSPMPYVKWMQ 241
Score = 79.5 bits (196), Expect = 2e-17
Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 6/103 (5%)
Query: 124 DLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIH 183
+L + P F+ G P+P +KW + +T D +
Sbjct: 196 NLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVG 255
Query: 184 TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
++ ++DS + +A + G + A + V+
Sbjct: 256 R------NVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSL 292
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 94.0 bits (234), Expect = 2e-24
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 1/105 (0%)
Query: 126 SEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI-HT 184
S P F + E R + + G P P + W + P+ ++
Sbjct: 2 SSGSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVR 61
Query: 185 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQG 229
+ LI+ V D+G++ IA NR G+ S LVV K G
Sbjct: 62 ENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106
Score = 33.9 bits (78), Expect = 0.013
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 235 VPPSFLTTISSAVINVGQLARFDAKISAT-KPLDVYWLK 272
P FL + G+L R D K+S P D+ W
Sbjct: 8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTP-DLSWQL 45
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 93.1 bits (232), Expect = 2e-24
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 2/97 (2%)
Query: 130 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK- 188
P PP E F G+P P + W I S + H +T
Sbjct: 2 PGIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD 61
Query: 189 -SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
+ LI+ V +D G++ + N G + N+ +
Sbjct: 62 LTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIR 98
Score = 32.3 bits (74), Expect = 0.039
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 235 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
+PP S I+ G++ + +V W
Sbjct: 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSC 41
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 92.3 bits (230), Expect = 4e-24
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 1/96 (1%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST-KSI 190
PP F + E + G+P P + W R P+
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
L + D+G + A N G +C A L V +
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 34.6 bits (80), Expect = 0.005
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 235 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
PP+F ++ + GQ ++ V WL+
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLR 41
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 90.8 bits (226), Expect = 1e-23
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
K + F + A FE+E +P +W + P+ +SPD +I K I
Sbjct: 3 MALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHI 61
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
LI+ + +G + A N K +ANL V+E
Sbjct: 62 LILHNCQLGMTGEVSFQAAN----TKSAANLKVKE 92
Score = 28.8 bits (65), Expect = 0.50
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 232 GGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
G + + + VG+ A F+ ++S W
Sbjct: 1 GAMALIEVEKPLYGVEVFVGETAHFEIELSEPDV-HGQWKL 40
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 91.2 bits (227), Expect = 1e-23
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Query: 127 EQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS 186
+ FT+++ + E+ A F + P T+ W + + +S Q
Sbjct: 2 SSGSSGANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEG 60
Query: 187 TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQG 229
L + + DS + G+A+ A L+V+ +R G
Sbjct: 61 LTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGRRSG 99
Score = 31.5 bits (72), Expect = 0.068
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 236 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
F +++ + A F K V W K
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKTEHPAA-TVTWRK 43
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 93.3 bits (232), Expect = 2e-23
Identities = 22/141 (15%), Positives = 48/141 (34%), Gaps = 11/141 (7%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
T + + F G+P + + I S+ + +S L
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 61
Query: 193 MRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
+ +ED+G++ A + G+ + + L + + +F +S G
Sbjct: 62 IYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ----------KLTFREVVSPQEFKQG 111
Query: 252 QLARFDAKISATKPLDVYWLK 272
+ A ++S++ V WL
Sbjct: 112 EDAEVVCRVSSSPAPAVSWLY 132
Score = 74.4 bits (183), Expect = 3e-16
Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 1/92 (1%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
F + + P + + A P P + W + +T+ D + + ++ I
Sbjct: 96 KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 155
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
+ D G++ +++V
Sbjct: 156 -LNINKSDEGIYRCEGRVEARGEIDFRDIIVI 186
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 89.7 bits (223), Expect = 4e-23
Identities = 18/92 (19%), Positives = 35/92 (38%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
P + + EV+F G P PT W D +P+ + S+ + +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
DSG + + +N G+ + ++V+
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 31.1 bits (71), Expect = 0.089
Identities = 6/38 (15%), Positives = 8/38 (21%)
Query: 235 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
+ P LT I G + W
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTV 38
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 89.3 bits (222), Expect = 7e-23
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
P F+ ++ C E + G P+P I W PI + + L
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAE---LH 67
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
++ ED G + +AEN G+ CSA + V
Sbjct: 68 IQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 33.8 bits (78), Expect = 0.010
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 235 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
V PSF + + + GQ + T + WL
Sbjct: 10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLL 47
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 89.3 bits (222), Expect = 7e-23
Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSPDFQIHTFSTKSILI 192
+ + +I E ++ + + T + W+ + +S ++I +IL
Sbjct: 2 AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILY 61
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQ 228
++ + D G + N G+ A L V+ R+
Sbjct: 62 VKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVRE 97
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 89.8 bits (223), Expect = 8e-23
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Query: 127 EQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS 186
+ + P+F K Q + E D + E + P P + W R + + + D
Sbjct: 9 SHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQD 68
Query: 187 T--KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
+ L+++ V +D+G + V A N G C+ L V +
Sbjct: 69 NTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
Score = 31.6 bits (72), Expect = 0.093
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 12/61 (19%)
Query: 213 GKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPLDVYWL 271
G + + P F+ S + G + + +ISA P ++W
Sbjct: 2 GHHHHHHSHEHKR----------APMFIYKPQSKKVLEGDSVKLECQISAIPPP-KLFWK 50
Query: 272 K 272
+
Sbjct: 51 R 51
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 88.5 bits (220), Expect = 1e-22
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 5/96 (5%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
+ P F + ++ E A P +KW + + + +
Sbjct: 6 SGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLE 64
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
L++R + +DSG ++ G SA L V
Sbjct: 65 LVVRNLRPQDSGRYSCSF----GDQTTSATLTVTAL 96
Score = 30.8 bits (70), Expect = 0.14
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 236 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
P F + + G A +S+ V W
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSS-VAAPVKWCY 43
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 95.8 bits (238), Expect = 2e-22
Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 16/147 (10%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK-- 188
PPV + Q + G+P P I W + I ++ +Q+ + T
Sbjct: 427 FDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNG 486
Query: 189 ---SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISS 245
S L + V D G++ IA+++ G A+ SA L V ++ +
Sbjct: 487 DVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG-----------LPYIRQMEK 535
Query: 246 AVINVGQLARFDAKISATKPLDVYWLK 272
I G+ ++ + W +
Sbjct: 536 KAIVAGETLIVTCPVAGYPIDSIVWER 562
Score = 91.5 bits (227), Expect = 5e-21
Identities = 34/179 (18%), Positives = 52/179 (29%), Gaps = 15/179 (8%)
Query: 99 RVVDASELDDDGYY---AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEV 155
+ + D Y A + Y A L Q P + + A
Sbjct: 582 IIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHC 641
Query: 156 EFDGDPLP-TIKWFREDFPITSSPDFQIHTFSTK-SILIMRQVFMEDSGVFAVIAENRGG 213
G LP I W + I+ + S+L + V +G F A N G
Sbjct: 642 SVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAG 701
Query: 214 KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
+ + L V VPP ++ + G A+ + K V W K
Sbjct: 702 HQQFTTPLNVY----------VPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKK 750
Score = 88.5 bits (219), Expect = 7e-20
Identities = 24/140 (17%), Positives = 42/140 (30%), Gaps = 17/140 (12%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
P A F ++ G+P+ T+ W ++ I S +S+L
Sbjct: 343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS----------ESVLR 392
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ 252
+ V ED G++ N A+ SA L + + PP + G
Sbjct: 393 IESVKKEDKGMYQCFVRNDRESAEASAELKLGGR-------FDPPVIRQAFQEETMEPGP 445
Query: 253 LARFDAKISATKPLDVYWLK 272
++ W
Sbjct: 446 SVFLKCVAGGNPTPEISWEL 465
Score = 87.3 bits (216), Expect = 1e-19
Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 12/142 (8%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS--I 190
V K G P+P +W++ T ++ +
Sbjct: 248 KVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGT 307
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250
LI++ +EDSG + + N G L V P S + ++
Sbjct: 308 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA----------PLSAKIDPPTQTVDF 357
Query: 251 GQLARFDAKISATKPLDVYWLK 272
G+ A F + + V W+K
Sbjct: 358 GRPAVFTCQYTGNPIKTVSWMK 379
Score = 80.0 bits (197), Expect = 4e-17
Identities = 23/143 (16%), Positives = 48/143 (33%), Gaps = 16/143 (11%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
P + ++ + G P+ +I W R++ + + ++ F +++I
Sbjct: 527 LPYIRQ-MEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKV--FPNGTLII 583
Query: 193 MRQVFMEDSGVFAVIAENRGGK-AKCSANLVVEEKRQGGRGGVVPPSFLT-TISSAVINV 250
D + +A+N+ G A+ S + V V P + V
Sbjct: 584 ENVERNSDQATYTCVAKNQEGYSARGSLEVQVM----------VLPRIIPFAFEEGPAQV 633
Query: 251 GQLARFDAKISAT-KPLDVYWLK 272
GQ + PL++ W
Sbjct: 634 GQYLTLHCSVPGGDLPLNIDWTL 656
Score = 66.9 bits (163), Expect = 1e-12
Identities = 15/112 (13%), Positives = 33/112 (29%), Gaps = 16/112 (14%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK---- 188
PP + + + A+ E + DG P P + W + +++ S
Sbjct: 714 PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDT--PGEYKDLKKSDNIRVE 771
Query: 189 -SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSF 239
L + + + G + A N G + ++ +
Sbjct: 772 EGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQ---------AHHHH 814
Score = 65.3 bits (159), Expect = 4e-12
Identities = 29/150 (19%), Positives = 44/150 (29%), Gaps = 18/150 (12%)
Query: 132 KPPVFTKKIQPCRAFEQDQ-ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
K PVF K+ F A E + G+P+P I W R D S +
Sbjct: 37 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 96
Query: 191 LIMR-----QVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISS 245
+ + V+A +A N+ G V VV + ++
Sbjct: 97 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA---------VVAQYYEADVNK 147
Query: 246 AVINVGQLARFDAKISATK---PLDVYWLK 272
+ G A I + V W
Sbjct: 148 EHVIRGNSAVIKCLIPSFVADFVEVVSWHT 177
Score = 64.6 bits (157), Expect = 6e-12
Identities = 28/221 (12%), Positives = 55/221 (24%), Gaps = 10/221 (4%)
Query: 73 KGDKEIVRKITATETTEMEHKGKIQE-RVVDASELDDDGYYAITERKYY--ALSDLSEQK 129
+ D V + + K R D + YA R + +S +
Sbjct: 75 RSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVR 134
Query: 130 PAKPPVFTKKIQPCRAFEQDQARFEVE---FDGDPLPTIKWFREDFPITSSPDFQI--HT 184
+ + + A + F D + + W ++ +
Sbjct: 135 AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYL 194
Query: 185 FSTKSILIMRQVFMEDS-GVFAVIAENR-GGKAKCSANLVVEEKRQGGRGGVVPPSFLTT 242
L +R+V ED + ++R G+ + SA + V L
Sbjct: 195 VLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAK 254
Query: 243 ISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVKRGV 283
+ W K + K+ V
Sbjct: 255 FDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAV 295
Score = 40.7 bits (95), Expect = 4e-04
Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAV-IN 249
+ M ++ +FA +A G +AN +++ P FL ++ + +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQK--------GPVFLKEPTNRIDFS 52
Query: 250 VGQLARFDAKISATKPLDVYWLK 272
A + K S ++ W++
Sbjct: 53 NSTGAEIECKASGNPMPEIIWIR 75
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 87.8 bits (218), Expect = 4e-22
Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 2/96 (2%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
P T ++ + G+P P I WF+++ + + L
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK--DGNRNLT 67
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQ 228
+R+V ED G++ A + G AK A ++E ++
Sbjct: 68 IRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQE 103
Score = 32.3 bits (74), Expect = 0.048
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 235 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
V P+ + + ++G+ S P + W K
Sbjct: 9 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFK 46
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 90.7 bits (225), Expect = 4e-22
Identities = 20/170 (11%), Positives = 49/170 (28%), Gaps = 23/170 (13%)
Query: 80 RKITATETTEMEHKGKIQERVVDASELDDDGYYAIT----------------------ER 117
I ++ + G+ ++ +D G Y +
Sbjct: 42 SAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYA 101
Query: 118 KYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS 177
++ L + + + V E GDP P + W + + + +
Sbjct: 102 EFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQT 161
Query: 178 PDFQIHTFSTK-SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
+ + + + + V DSG + ++ +N+ G + V
Sbjct: 162 DHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211
Score = 83.8 bits (207), Expect = 2e-19
Identities = 15/125 (12%), Positives = 31/125 (24%), Gaps = 11/125 (8%)
Query: 159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 218
+ W I S + + L + + D G + + + + +
Sbjct: 29 YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT 88
Query: 219 ANLVVEE-----------KRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLD 267
+L + K+ I G+ + P +
Sbjct: 89 VDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE 148
Query: 268 VYWLK 272
V WLK
Sbjct: 149 VSWLK 153
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 91.9 bits (228), Expect = 7e-22
Identities = 24/146 (16%), Positives = 53/146 (36%), Gaps = 6/146 (4%)
Query: 129 KPAKPPVFTKKIQPCRAFEQDQARFEVEFDG-DPLPTIKWFREDFPITSSPDFQIHTFST 187
P P F + + + + + I W++++ I S D +
Sbjct: 3 DPFTGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREI--SVDEKHDFKDG 59
Query: 188 KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAV 247
L++ + +D+G++ VI ++ GK K LV E ++ V L+ +
Sbjct: 60 ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMM-EVCKKIALSATDLKI 118
Query: 248 INVGQLARFDAKISATKP-LDVYWLK 272
+ + + + ++ L V W
Sbjct: 119 QSTAEGIQLYSFVTYYVEDLKVNWSH 144
Score = 84.6 bits (209), Expect = 4e-19
Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 1/105 (0%)
Query: 122 LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ 181
L + + + V E GDP P + W + + + S
Sbjct: 211 LKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCN 270
Query: 182 IHTFSTK-SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
+ + + + + V DSG + ++ +N+ G + V
Sbjct: 271 LKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315
Score = 84.2 bits (208), Expect = 5e-19
Identities = 18/161 (11%), Positives = 39/161 (24%), Gaps = 21/161 (13%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPL----------PTIKWFREDFPITSSPDFQI 182
++ A + + +G L + W I S +
Sbjct: 98 FKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKT 157
Query: 183 HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE-----------KRQGGR 231
+ L + + D G + + + + + +L + K+
Sbjct: 158 GVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIA 217
Query: 232 GGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
I G+ + P +V WLK
Sbjct: 218 EKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK 258
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 93.0 bits (231), Expect = 8e-22
Identities = 34/148 (22%), Positives = 52/148 (35%), Gaps = 12/148 (8%)
Query: 125 LSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHT 184
LS+ + F ++ A E A E G P P+ W R + I ++
Sbjct: 213 LSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSK--KYS 270
Query: 185 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTIS 244
S L++ V +DSG + + + SA L V VPP FL S
Sbjct: 271 LLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVL----------VPPWFLNHPS 320
Query: 245 SAVINVGQLARFDAKISATKPLDVYWLK 272
+ F+ +S V W+K
Sbjct: 321 NLYAYESMDIEFECAVSGKPVPTVNWMK 348
Score = 85.7 bits (212), Expect = 3e-19
Identities = 33/143 (23%), Positives = 52/143 (36%), Gaps = 5/143 (3%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
A P F + + AF D + E GDP+PTI W + + P
Sbjct: 119 AGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA 178
Query: 191 LIMRQVFMEDSGVFAVIAENRGG-KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVIN 249
L + ++ DSGV+ A N + A + + R FL S+ +
Sbjct: 179 LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHR----QLYFLQRPSNVIAI 234
Query: 250 VGQLARFDAKISATKPLDVYWLK 272
G+ A + +S P WL+
Sbjct: 235 EGKDAVLECCVSGYPPPSFTWLR 257
Score = 80.7 bits (199), Expect = 2e-17
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
PP F A+E FE G P+PT+ W + + S FQI S L
Sbjct: 312 PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSN---LR 368
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
+ V D G + +AEN G A+ SA L+V +
Sbjct: 369 ILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401
Score = 73.7 bits (181), Expect = 3e-15
Identities = 22/145 (15%), Positives = 40/145 (27%), Gaps = 13/145 (8%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGD-PLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
F + + D +P IKW ++ + D + S+L
Sbjct: 21 SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLL 80
Query: 192 IMR----QVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAV 247
I + D G++ A + S V P FL+ S
Sbjct: 81 IQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVA--------GPLRFLSQTESIT 132
Query: 248 INVGQLARFDAKISATKPLDVYWLK 272
+G ++ ++W K
Sbjct: 133 AFMGDTVLLKCEVIGDPMPTIHWQK 157
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 92.0 bits (228), Expect = 8e-22
Identities = 38/220 (17%), Positives = 69/220 (31%), Gaps = 29/220 (13%)
Query: 80 RKITATETTEMEHKGKIQERVVDASELDDDGYY--------------AITERKYYALSDL 125
+ E+E KG + +DD G Y I E + L L
Sbjct: 41 VSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLAL 100
Query: 126 SEQKPAKPPVFTKKIQPCRAFEQDQARFEVE-FDGDPLPTIKWFREDFPITSSPDFQIHT 184
S + P V K E+ Q RF ++ + + + I P +++H
Sbjct: 101 SH-EHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHI 159
Query: 185 FSTKSI--LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGV-------- 234
I + M ++ ED G + ++ + LV + ++ +
Sbjct: 160 DRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIR 219
Query: 235 -VPPSFLTTISSAVINVGQLARFDAKISATKP-LDVYWLK 272
P F+ +S V K++ K + W K
Sbjct: 220 KQGPHFVEYLSWEVT-GECNVLLKCKVANIKKETHIVWYK 258
Score = 88.5 bits (219), Expect = 2e-20
Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 4/145 (2%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
P + + FE + P W ++ SP ++ + K+
Sbjct: 1 GIDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGG--VVPPSFLTTISSAVI 248
+ + + M+D G+++ + G A E KR P + + + I
Sbjct: 60 MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEI 119
Query: 249 NVGQLARFDAKISATKPL-DVYWLK 272
RF + V ++
Sbjct: 120 LEKGQVRFWMQAEKLSGNAKVNYIF 144
Score = 73.5 bits (180), Expect = 2e-15
Identities = 26/168 (15%), Positives = 57/168 (33%), Gaps = 26/168 (15%)
Query: 80 RKITATETTEM--EHKGKIQERVVDASELDDDGYY--------------------AITER 117
++I +M + I E ++ + +D+G Y +
Sbjct: 147 KEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKL 206
Query: 118 KYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITS 176
+ A E + P F + + + + + T I W++++ I+
Sbjct: 207 QKEAEFQRQEWIRKQGPHFVEYLS-WEVTGECNVLLKCKVANIKKETHIVWYKDEREISV 265
Query: 177 SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
L++ + +D+G++ VI ++ GK K LV E
Sbjct: 266 DEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 90.0 bits (223), Expect = 1e-21
Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 10/159 (6%)
Query: 129 KPAKPPVFTK--KIQP--CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ-IH 183
+ P +T K++ + +F G+P+PT++W +
Sbjct: 11 NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK 70
Query: 184 TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTI 243
+ LIM V D G + + EN G + +L V E R P
Sbjct: 71 VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVE-----RSRHRPILQAGLP 125
Query: 244 SSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVKRG 282
++A VG F K+ + + W+K + K G
Sbjct: 126 ANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG 164
Score = 71.9 bits (176), Expect = 4e-15
Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 11/116 (9%)
Query: 124 DLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE-----------DF 172
D+ E+ +P + F + D P I+W +
Sbjct: 109 DVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGL 168
Query: 173 PITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQ 228
P S +L + V D+G + N G+A SA L V K+Q
Sbjct: 169 PYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQ 224
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 85.4 bits (212), Expect = 2e-21
Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
+ P K ++ + E P + W ++ I S + + T ++
Sbjct: 6 SGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAM 64
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
L++R ++D+G + E +K +A+L VEEK
Sbjct: 65 LVIRGASLKDAGEYTCEVEA----SKSTASLHVEEK 96
Score = 30.3 bits (69), Expect = 0.18
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 236 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
P + + + + G+ ++S V+WLK
Sbjct: 8 PAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLK 43
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 89.2 bits (221), Expect = 2e-21
Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 16/151 (10%)
Query: 130 PAKPPVFTKKIQPCRAFEQDQ-------ARFEVEFDGDPLPTIKWFREDFPITSSPDFQ- 181
P +T+ P R ++ RF G+P P+I W +
Sbjct: 8 DTGAPYWTR---PERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG 64
Query: 182 IHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLT 241
I + L+M V D G + + EN+ G + + L V E R P
Sbjct: 65 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE-----RSPHRPILQAG 119
Query: 242 TISSAVINVGQLARFDAKISATKPLDVYWLK 272
++ +G F K+ + + WLK
Sbjct: 120 LPANQTAVLGSDVEFHCKVYSDAQPHIQWLK 150
Score = 69.6 bits (170), Expect = 3e-14
Identities = 22/138 (15%), Positives = 40/138 (28%), Gaps = 18/138 (13%)
Query: 124 DLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFP---------- 173
D+ E+ P +P + A F + D P I+W +
Sbjct: 105 DVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGT 164
Query: 174 --ITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGR 231
+T + + L + V D G + A N G A+ + L V R
Sbjct: 165 PYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPR---- 220
Query: 232 GGVVPPSFLTTISSAVIN 249
+ + ++
Sbjct: 221 --AAEEELVEADEAGSVH 236
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 87.5 bits (217), Expect = 6e-21
Identities = 35/146 (23%), Positives = 50/146 (34%), Gaps = 7/146 (4%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
A PP +K Q A F GDP P+I W + ++ + I
Sbjct: 4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63
Query: 191 LIMR---QVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSA 246
I+R D + +AEN G A A L + E + G P +
Sbjct: 64 SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAG---FPVITQGPGTR 120
Query: 247 VINVGQLARFDAKISATKPLDVYWLK 272
VI VG K ++YW+K
Sbjct: 121 VIEVGHTVLMTCKAIGNPTPNIYWIK 146
Score = 78.3 bits (193), Expect = 1e-17
Identities = 29/141 (20%), Positives = 42/141 (29%), Gaps = 13/141 (9%)
Query: 99 RVVDASELDDDGYY---------AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQD 149
R+ DD Y ++ PA PV T+
Sbjct: 67 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH 126
Query: 150 QARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE 209
+ G+P P I W + + S L + ED G + +AE
Sbjct: 127 TVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYS---LKDGFLQIENSREEDQGKYECVAE 183
Query: 210 NRGGKAKCSA-NLVVEEKRQG 229
N G A NL V+ +R G
Sbjct: 184 NSMGTEHSKATNLYVKVRRVG 204
Score = 37.5 bits (87), Expect = 0.002
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 233 GVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
G PP + + + VG +A F P + W K
Sbjct: 3 GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRK 42
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 83.9 bits (208), Expect = 7e-21
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
F+KK + A FE E + ++W R I++S + + T T+ L
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAETERAG-VKVRWQRGGSDISASNKYGLATEGTRHTLT 66
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
+R+V D G +AVIA G +K +L V E
Sbjct: 67 VREVGPADQGSYAVIA----GSSKVKFDLKVIE 95
Score = 26.9 bits (60), Expect = 2.4
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 236 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
+F S + G A F+A+ V W +
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAETERAGV-KVRWQR 43
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 84.0 bits (208), Expect = 7e-21
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 5/97 (5%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSSPDFQIHTFSTKS 189
+ TK+++ E + FE W + SS FQ K
Sbjct: 6 SGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKY 65
Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
IL++R+ D+G A+L+V E+
Sbjct: 66 ILVVREAAPSDAGEVVFSVRG----LTSKASLIVRER 98
Score = 29.3 bits (66), Expect = 0.43
Identities = 4/38 (10%), Positives = 10/38 (26%), Gaps = 1/38 (2%)
Query: 236 PPSFLTTISSAVINVGQLARFDAKISATKPL-DVYWLK 272
+ + + G+ F+ +S W
Sbjct: 8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTV 45
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 83.6 bits (207), Expect = 9e-21
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 131 AKPPVFTKKIQPC-RAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS 189
+ F K + P + + + RF VE DP +KW++ I S + +
Sbjct: 5 SSGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQR 63
Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
IL + M D + V A G KCS L V
Sbjct: 64 ILFINNCQMTDDSEYYVTA----GDEKCSTELFVRSG 96
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 88.3 bits (219), Expect = 1e-20
Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 13/143 (9%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
F + + P + + A P P + W + +T+ D + + ++ I
Sbjct: 98 KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 157
Query: 193 MRQVFMEDSGVFAVIAEN-RGGKAKCSANLVVEEKRQGGRGGVVPPSFLTT--ISSAVIN 249
+ D G++ G+ +V+ VPP+ +A
Sbjct: 158 -LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN---------VPPAISMPQKSFNATAE 207
Query: 250 VGQLARFDAKISATKPLDVYWLK 272
G+ F + S + + W +
Sbjct: 208 RGEEMTFSCRASGSPEPAISWFR 230
Score = 79.9 bits (197), Expect = 1e-17
Identities = 22/141 (15%), Positives = 48/141 (34%), Gaps = 11/141 (7%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
T + + F G+P + + I S+ + +S L
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63
Query: 193 MRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
+ +ED+G++ A + G+ + + L + + +F +S G
Sbjct: 64 IYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ----------KLTFREVVSPQEFKQG 113
Query: 252 QLARFDAKISATKPLDVYWLK 272
+ A ++S++ V WL
Sbjct: 114 EDAEVVCRVSSSPAPAVSWLY 134
Score = 77.9 bits (192), Expect = 6e-17
Identities = 28/139 (20%), Positives = 45/139 (32%), Gaps = 17/139 (12%)
Query: 106 LDDDGYY---AITERKYYALSDLSEQKPAKPPVFT--KKIQPCRAFEQDQARFEVEFDGD 160
D+G Y E + PP + +K A ++ F G
Sbjct: 162 KSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGS 221
Query: 161 PLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN 220
P P I WFR I + + + + + L +R + D G + A N+ G+ + A
Sbjct: 222 PEPAISWFRNGKLIEENEKYIL--KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAF 279
Query: 221 LVVEEKRQGGRGGVVPPSF 239
L V V
Sbjct: 280 LQV----------FVQHHH 288
Score = 29.0 bits (65), Expect = 1.7
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 234 VVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
+ ++S ++VG+ F P + W
Sbjct: 2 MALLQVTISLSKVELSVGESKFFTCTAIGE-PESIDWYN 39
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 85.9 bits (213), Expect = 2e-20
Identities = 31/146 (21%), Positives = 47/146 (32%), Gaps = 12/146 (8%)
Query: 128 QKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST 187
+K K PV T ++ A ++ A F + P P I W R I +
Sbjct: 2 EKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDT-RYSIREN 60
Query: 188 KSILIMRQVFMEDSGVFAVIAENR-GGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSA 246
+L + V D G++ A N GG + L V+ + P +
Sbjct: 61 GQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK----------MKPKITRPPINV 110
Query: 247 VINVGQLARFDAKISATKPLDVYWLK 272
I G A V W+K
Sbjct: 111 KIIEGLKAVLPCTTMGNPKPSVSWIK 136
Score = 74.0 bits (182), Expect = 3e-16
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
P T+ + E +A G+P P++ W + D + + + +
Sbjct: 98 KMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGS--- 154
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCS-ANLVVE 224
L + V ED+G + +A+N G A L VE
Sbjct: 155 LRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 82.8 bits (205), Expect = 2e-20
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDF----QIHTFS 186
+ P + ++ + F D+ VE + + W + +T F +
Sbjct: 6 SGPVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDG 64
Query: 187 TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKR 227
+ ILI V ED G + VI +C A L+VEEK+
Sbjct: 65 KRHILIFSDVVQEDRGRYQVITNG----GQCEAELIVEEKQ 101
Score = 29.6 bits (67), Expect = 0.35
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 236 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
P +T + + VG ++S V W+K
Sbjct: 8 PVLIVTPLEDQQVFVGDRVEMAVEVSEEGA-QVMWMK 43
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 82.8 bits (205), Expect = 3e-20
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 5/97 (5%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
+ + ++ E A F + WF + P+ ++ +I
Sbjct: 11 GRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYH 70
Query: 191 -LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
L +RQ+ ++DSG A G + SA L V EK
Sbjct: 71 VLTLRQLALKDSGTIYFEA----GDQRASAALRVTEK 103
Score = 40.8 bits (96), Expect = 5e-05
Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 9/58 (15%)
Query: 215 AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
++ +V+ + + + + G A F +IS V+W
Sbjct: 1 GSSGSSGLVQGR---------RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFL 49
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 85.4 bits (211), Expect = 4e-20
Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 14/152 (9%)
Query: 134 PVFTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI-- 190
FTK E+ Q RF ++ + + + I P +++H I
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE---------EKRQGGRGGVVPPSFLT 241
+ M ++ ED G + ++ + LV + E ++ P F+
Sbjct: 63 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122
Query: 242 TISSAVINVGQLARFDAKISATKP-LDVYWLK 272
+S V K++ K + W K
Sbjct: 123 YLSWEVT-GECNVLLKCKVANIKKETHIVWYK 153
Score = 71.1 bits (174), Expect = 5e-15
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 126 SEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSPDFQIHT 184
E + P F + + + + T I W++++ I+
Sbjct: 110 QEWIRKQGPHFVEY-LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD 168
Query: 185 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
L++ + +D+G++ VI ++ GK K LV E
Sbjct: 169 --GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 82.0 bits (203), Expect = 4e-20
Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
+ P FT+ ++ A E A + E ++W + + + + T+
Sbjct: 6 SGPARFTQDLKTKEASEGATATLQCELSKVA--PVEWKKGPETLRDGGRYSLKQDGTRCE 63
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
L + + + D+G ++ + G+ + SA L V
Sbjct: 64 LQIHDLSVADAGEYSCMC----GQERTSATLTVRAL 95
Score = 30.8 bits (70), Expect = 0.14
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 236 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
P F + + + G A ++S K V W K
Sbjct: 8 PARFTQDLKTKEASEGATATLQCELS--KVAPVEWKK 42
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 87.0 bits (215), Expect = 6e-20
Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 10/155 (6%)
Query: 133 PPVFTKKI----QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPIT-SSPDFQIHTFST 187
P +T+ + + RF G+P P+I W + I
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 178
Query: 188 KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAV 247
+ L+M V D G + + EN+ G + + L V E R P ++
Sbjct: 179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE-----RSPHRPILQAGLPANQT 233
Query: 248 INVGQLARFDAKISATKPLDVYWLKVSSLSDVKRG 282
+G F K+ + + WLK ++ K G
Sbjct: 234 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG 268
Score = 67.7 bits (165), Expect = 3e-13
Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 20/161 (12%)
Query: 128 QKPAKPPVFTKKIQPCRAFEQDQARFEVE-FDGDPLPTIKWFREDFPITSSPDFQIHTFS 186
+ P + + D G P+ W ++ + S +
Sbjct: 3 RAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGP-- 60
Query: 187 TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV-----------EEKRQGGRGGVV 235
L + EDSG ++ + V E++ +
Sbjct: 61 --QRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTG 118
Query: 236 PPSFL----TTISSAVINVGQLARFDAKISATKPLDVYWLK 272
P + + RF + + WLK
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK 159
Score = 64.3 bits (156), Expect = 5e-12
Identities = 23/113 (20%), Positives = 36/113 (31%), Gaps = 13/113 (11%)
Query: 127 EQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE-------------DFP 173
E+ P +P + A F + D P I+W + +
Sbjct: 216 ERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYV 275
Query: 174 ITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
T +L + V ED+G + +A N G + SA LVV
Sbjct: 276 TVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPA 328
Score = 33.4 bits (76), Expect = 0.061
Identities = 9/44 (20%), Positives = 11/44 (25%), Gaps = 1/44 (2%)
Query: 230 GRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL-DVYWLK 272
GR VP V G P+ W+K
Sbjct: 2 GRAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVK 45
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 84.1 bits (208), Expect = 7e-20
Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 15/142 (10%)
Query: 133 PPVFTKKIQP--CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
P + + A ++ F G P P I WFR I + + + + +
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNTE 59
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250
L +R + D G + A N+ G+ + A L V V P + +
Sbjct: 60 LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV----------FVQPHIIQLKNETTY-E 108
Query: 251 GQLARFDAKISATKPLDVYWLK 272
++ W +
Sbjct: 109 NGQVTLVCDAEGEPIPEITWKR 130
Score = 71.8 bits (176), Expect = 2e-15
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD-------FQIHTF 185
P + + +E Q + +G+P+P I W R T + ++
Sbjct: 95 QPHIIQL-KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 153
Query: 186 STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
S L ++ V + DSG + A +R G + S L +E
Sbjct: 154 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 83.7 bits (207), Expect = 8e-20
Identities = 20/142 (14%), Positives = 45/142 (31%), Gaps = 11/142 (7%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
F + + P + + A P P + W + +T+ D + + ++ I
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 61
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTI--SSAVINV 250
+ D G++ +++V VPP+ +A
Sbjct: 62 -LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN--------VPPAISMPQKSFNATAER 112
Query: 251 GQLARFDAKISATKPLDVYWLK 272
G+ F + S + + W +
Sbjct: 113 GEEMTFSCRASGSPEPAISWFR 134
Score = 74.8 bits (184), Expect = 2e-16
Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 7/126 (5%)
Query: 106 LDDDGYY---AITERKYYALSDLSEQKPAKPPVFTKKIQP--CRAFEQDQARFEVEFDGD 160
D+G Y E + PP + + A ++ F G
Sbjct: 66 KSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGS 125
Query: 161 PLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN 220
P P I WFR I + + + + + L +R + D G + A N+ G+ + A
Sbjct: 126 PEPAISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAF 183
Query: 221 LVVEEK 226
L V +
Sbjct: 184 LQVFVQ 189
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 86.9 bits (215), Expect = 1e-19
Identities = 33/199 (16%), Positives = 62/199 (31%), Gaps = 26/199 (13%)
Query: 90 MEHKGKIQERVVDASELDDDGYY-------AITERKYYALSDL-----SEQKPAKPPVFT 137
G + +V ++ D Y A+ E ++ PV
Sbjct: 157 AGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQ 216
Query: 138 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI--HTFSTKSILIMRQ 195
+ A D + +P+ +F+ + +P+ +I H ++ L+ +
Sbjct: 217 YVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKT 276
Query: 196 VFMEDSGVFAVIAENRGGKA-KCSANLVVEEKRQGGRGGVVPPSFLTTISSAV-INVGQL 253
ED GV+ +N GK K S L V P + + + GQ
Sbjct: 277 TLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS----------APKYEQKPEKVIVVKQGQD 326
Query: 254 ARFDAKISATKPLDVYWLK 272
K++ +V W
Sbjct: 327 VTIPCKVTGLPAPNVVWSH 345
Score = 70.3 bits (172), Expect = 5e-14
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 6/92 (6%)
Query: 133 PPVFTKKIQPC-RAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
P + +K + + + G P P + W P+ S + S L
Sbjct: 308 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL-SGGRATVTD----SGL 362
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
+++ V D G + A N G + V
Sbjct: 363 VIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 69.9 bits (171), Expect = 8e-14
Identities = 20/144 (13%), Positives = 36/144 (25%), Gaps = 14/144 (9%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSPDFQIHTFSTKSI 190
K PV + E + E +G+ W ++ S+
Sbjct: 5 KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL 64
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKC-SANLVVEEKRQGGRGGVVPPSFLTTISSAVIN 249
+ +R D G + AE G A + +
Sbjct: 65 VFLR-PQASDEGHYQCFAETPAGVASSRVISFRKT----------YLIASPAKTHEKTPI 113
Query: 250 VGQLARFDAKISATKP-LDVYWLK 272
G+ + D + P + W K
Sbjct: 114 EGRPFQLDCVLPNAYPKPLITWKK 137
Score = 67.6 bits (165), Expect = 4e-13
Identities = 18/161 (11%), Positives = 39/161 (24%), Gaps = 9/161 (5%)
Query: 121 ALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSSPD 179
A S + + K E + + + P P I W + + D
Sbjct: 88 ASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNAD 147
Query: 180 FQ-----IHTFSTKS--ILIMRQVFMEDSGVFAVIAENRGGKAKC-SANLVVEEKRQGGR 231
I + I+ + + D + A+N + ++ +
Sbjct: 148 VTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNS 207
Query: 232 GGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
G P + G + + + K
Sbjct: 208 GYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFK 248
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 80.9 bits (200), Expect = 1e-19
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
A P FT+ ++ A E A E ++W++ + + +
Sbjct: 17 ALPIKFTEGLRNEEATEGATAVLRCELSKMA--PVEWWKGHETLRDGDRHSLRQDGARCE 74
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
L +R + ED+G + + GK + SA L V
Sbjct: 75 LQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAM 106
Score = 40.8 bits (96), Expect = 5e-05
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 11/63 (17%)
Query: 210 NRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVY 269
+ G + SA L V +P F + + G A ++S K V
Sbjct: 2 SSGSSGRTSAMLTVRA---------LPIKFTEGLRNEEATEGATAVLRCELS--KMAPVE 50
Query: 270 WLK 272
W K
Sbjct: 51 WWK 53
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 80.5 bits (199), Expect = 2e-19
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 3/101 (2%)
Query: 127 EQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS 186
+ + I +QA F+ E + T KW++ + S I
Sbjct: 2 SSGSSGQLEVLQDIADLTVKAAEQAVFKCEVSDEK-VTGKWYKNGVEVRPSKRITISHVG 60
Query: 187 TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKR 227
L++ V ED G + + + SA L E +
Sbjct: 61 RFHKLVIDDVRPEDEGDYTFVPDG--YALSLSAKLNFLEIK 99
Score = 29.7 bits (67), Expect = 0.35
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 236 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
L I+ + + A F ++S K W K
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVSDEKV-TGKWYK 43
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 87.1 bits (215), Expect = 2e-19
Identities = 31/208 (14%), Positives = 64/208 (30%), Gaps = 17/208 (8%)
Query: 32 VSTEETKIIDGRKVSVPEPSASGVHGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEME 91
+ + + VS+ +A + + K + +T
Sbjct: 554 TLQPDMQPTEQESVSL-WCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKL 612
Query: 92 HKGKIQERVVDASEL-------DDDGYY------AITERKYYALSDLSEQKPAKPPVFTK 138
+ D + D G Y T++++ + L+ P T
Sbjct: 613 NATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTV-LERVAPTITG 671
Query: 139 KIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFM 198
++ + G+P P I WF+++ + + L +R+V
Sbjct: 672 NLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK--DGNRNLTIRRVRK 729
Query: 199 EDSGVFAVIAENRGGKAKCSANLVVEEK 226
ED G++ A + G AK A ++E
Sbjct: 730 EDEGLYTCQACSVLGCAKVEAFFIIEGA 757
Score = 79.8 bits (196), Expect = 6e-17
Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 17/147 (11%)
Query: 130 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS 189
+ A ++ R ++ G P P IKW++ P+ S+ HT
Sbjct: 327 KPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESN-----HTIKAGH 381
Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSA--- 246
+L + +V D+G + VI N K K S + + VPP +
Sbjct: 382 VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVY--------VPPQIGEKSLISPVD 433
Query: 247 VINVGQLARFDAKISAT-KPLDVYWLK 272
G + A P ++W
Sbjct: 434 SYQYGTTQTLTCTVYAIPPPHHIHWYW 460
Score = 74.8 bits (183), Expect = 3e-15
Identities = 21/160 (13%), Positives = 48/160 (30%), Gaps = 27/160 (16%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK---- 188
P T + + EQ+ D + W++ ++ T K
Sbjct: 550 GPEITLQPDM-QPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDT 608
Query: 189 ----------------SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRG 232
I+ ++ ++D G + +A++R K + + +
Sbjct: 609 LWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER---- 664
Query: 233 GVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
V P+ + + ++G+ S P + W K
Sbjct: 665 --VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFK 702
Score = 67.1 bits (163), Expect = 1e-12
Identities = 23/156 (14%), Positives = 34/156 (21%), Gaps = 17/156 (10%)
Query: 127 EQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTI--KWFREDFPITS-------- 176
V ++ + I W
Sbjct: 218 VVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL 277
Query: 177 SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVP 236
S L + V D G++ A + K S + V EK
Sbjct: 278 KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPF-------V 330
Query: 237 PSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
S VG+ R AK P ++ W K
Sbjct: 331 AFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYK 366
Score = 63.6 bits (154), Expect = 2e-11
Identities = 19/190 (10%), Positives = 46/190 (24%), Gaps = 15/190 (7%)
Query: 100 VVDASELDDDGYY-------AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQAR 152
+ +D G Y + Y + D A + +
Sbjct: 89 TIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVS-DQHGVVYITENKNKTVV 147
Query: 153 FEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG 212
L R PD ++ +K + + +G+ A+
Sbjct: 148 IPCLGSISNLNVSLCARYP-EKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKIND 206
Query: 213 GKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
+ +VV + + L+ ++VG+ + + + +
Sbjct: 207 ESYQSIMYIVVVVGYR------IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNW 260
Query: 273 VSSLSDVKRG 282
S +
Sbjct: 261 EYPSSKHQHK 270
Score = 59.4 bits (143), Expect = 4e-10
Identities = 12/152 (7%), Positives = 27/152 (17%), Gaps = 8/152 (5%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIH-TFSTKSI 190
P + + + G W +
Sbjct: 30 DLPRLSIQKDILTIKANTTLQITCR--GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKT 87
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250
L + +V D+G + + + + S + N
Sbjct: 88 LTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPF-----IASVSDQHGVVYITENK 142
Query: 251 GQLARFDAKISATKPLDVYWLKVSSLSDVKRG 282
+ S + + V G
Sbjct: 143 NKTVVIPCLGSISNLNVSLCARYPEKRFVPDG 174
Score = 54.0 bits (129), Expect = 2e-08
Identities = 17/177 (9%), Positives = 36/177 (20%), Gaps = 48/177 (27%)
Query: 133 PPVFTKKI---QPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITSSP---------- 178
PP +K P P I W+ + ++
Sbjct: 420 PPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNP 479
Query: 179 -----------------------DFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA 215
F + K++ + S ++ A N+ G+
Sbjct: 480 YPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRG 539
Query: 216 KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
+ + V P + + ++ W K
Sbjct: 540 ERVISFHVT----------RGPEITLQPDMQPT-EQESVSLWCTADRSTFENLTWYK 585
Score = 35.1 bits (80), Expect = 0.028
Identities = 11/91 (12%), Positives = 21/91 (23%), Gaps = 15/91 (16%)
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ 252
M+ + ++ + S +L P I
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSL-------------DLPRLSIQKDILTIKANT 47
Query: 253 LARFDAKISATKPLDVYWLKVSSLSDVKRGV 283
+ + LD W S S+ + V
Sbjct: 48 TLQITC--RGQRDLDWLWPNNQSGSEQRVEV 76
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 80.6 bits (199), Expect = 2e-19
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 5/104 (4%)
Query: 123 SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI 182
S S + V+ A ++ E P ++W ++ + SP +
Sbjct: 3 SGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLL 61
Query: 183 HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
T L++ V +EDSG + S + V E
Sbjct: 62 QKEDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTEP 101
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 79.7 bits (197), Expect = 3e-19
Identities = 11/95 (11%), Positives = 25/95 (26%), Gaps = 4/95 (4%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
+ + + + E + KW + P+ S ++
Sbjct: 5 SSGLKILTPLTDQTVNLGKEICLKCEISENI--PGKWTKNGLPVQESDRLKVVQKGRIHK 62
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
L++ ED G + + A + V
Sbjct: 63 LVIANALTEDEGDYVFAPDA--YNVTLPAKVHVIS 95
Score = 28.1 bits (63), Expect = 1.0
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 230 GRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
G G LT ++ +N+G+ +IS P W K
Sbjct: 1 GSSGSSGLKILTPLTDQTVNLGKEICLKCEISENIP--GKWTK 41
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 84.9 bits (210), Expect = 5e-19
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 13/150 (8%)
Query: 123 SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI 182
+ ++ E G P P I W+++ + S +
Sbjct: 212 TRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSD---KA 268
Query: 183 HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTT 242
+ L + V EDSG + +A N+ G + + ++ V+ P +L
Sbjct: 269 KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK----------AAPYWLDE 318
Query: 243 ISSAVINVGQLARFDAKISATKPLDVYWLK 272
+ ++ G+ R + + V W+
Sbjct: 319 PKNLILAPGEDGRLVCRANGNPKPTVQWMV 348
Score = 77.2 bits (190), Expect = 3e-16
Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
P + + + + R +G+P PT++W P+ S+P + +I+
Sbjct: 312 APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIF 371
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
R + V+ N G +A + V +
Sbjct: 372 -RDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403
Score = 66.0 bits (161), Expect = 1e-12
Identities = 27/148 (18%), Positives = 46/148 (31%), Gaps = 18/148 (12%)
Query: 133 PPVFTKK-IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
PP TK+ + +D E E G+P P+ W R + D ++ L
Sbjct: 16 PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTL 75
Query: 192 IMRQVFM----EDSGVFAVIAENRGGKAKC-SANLVVEEKRQGGRGGVVPPSFLT-TISS 245
++ E G + A N+ G A L V + P + +
Sbjct: 76 VIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK----------SPLWPKENLDP 125
Query: 246 AVINVGQLARFDAKISATKP-LDVYWLK 272
V+ G P ++W+
Sbjct: 126 VVVQEGAPLTLQCNPPPGLPSPVIFWMS 153
Score = 55.3 bits (133), Expect = 6e-09
Identities = 25/145 (17%), Positives = 41/145 (28%), Gaps = 7/145 (4%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
P + + P E + G P P I W + D ++ L
Sbjct: 116 PLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQ-DKRVSQGHNGD-L 173
Query: 192 IMRQVFMEDS-GVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFL---TTISSAV 247
V ++D ++ A N + PSF+ T SS +
Sbjct: 174 YFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQM 233
Query: 248 INVGQLARFDAKISATKPLDVYWLK 272
+ G + S D+ W K
Sbjct: 234 VLRGMDLLLECIASGVPTPDIAWYK 258
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 78.9 bits (195), Expect = 6e-19
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS--TK 188
+ + TK+++ A+ ++ E E + +KWF+ I P + K
Sbjct: 5 SSGIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKK 63
Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
ILI+ D+ ++V+ + SA L V+ K
Sbjct: 64 HILIIEGATKADAAEYSVMTTG----GQSSAKLSVDLK 97
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 84.0 bits (207), Expect = 7e-19
Identities = 23/148 (15%), Positives = 40/148 (27%), Gaps = 10/148 (6%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFE-------VEFDGDPLPTIKWFREDFPITSSPDFQIHT 184
+ + E + + P + W + D T + +
Sbjct: 17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM 76
Query: 185 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTIS 244
++ L + EDSG + N K S L V E + P LT +
Sbjct: 77 WAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLST 136
Query: 245 SAVINVGQLARFDAKISATKPLDVYWLK 272
S V+ + + W K
Sbjct: 137 SGVL---VCPDLSEFTRDKTDVKIQWYK 161
Score = 65.9 bits (160), Expect = 2e-12
Identities = 13/132 (9%), Positives = 43/132 (32%), Gaps = 6/132 (4%)
Query: 151 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 210
I+W+++ + + + T +L+ V +ED+G + +
Sbjct: 143 PDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLV-HDVALEDAGYYRCVLTF 201
Query: 211 RGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATK----PL 266
+ + +E + + + P ++ + + ++G K+
Sbjct: 202 AHEGQQYNITRSIELRIK-KKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTT 260
Query: 267 DVYWLKVSSLSD 278
++W + +
Sbjct: 261 MLWWTANDTHIE 272
Score = 47.8 bits (113), Expect = 1e-06
Identities = 18/112 (16%), Positives = 32/112 (28%), Gaps = 17/112 (15%)
Query: 127 EQKPAKPPVFTKKIQPCRAFEQDQARFE---VEFDGDPLPTIKWFRED----------FP 173
++K PV ++ A + G PL T+ W+ +
Sbjct: 220 KKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGR 279
Query: 174 ITSSPDFQIHT---FSTKSILIMRQVFMEDSGV-FAVIAENRGGKAKCSANL 221
+T P + + LI V ED + F + N +
Sbjct: 280 VTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 78.6 bits (194), Expect = 8e-19
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 132 KPPVFTKKIQPC-RAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD-FQIHTFSTKS 189
K F KK++P + + + R VE D +KW + I S + + K
Sbjct: 14 KSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKR 72
Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
L + Q + D + + G KCS L V+E
Sbjct: 73 TLTISQCSLADDAAYQCVV----GGEKCSTELFVKE 104
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 84.1 bits (208), Expect = 9e-19
Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 15/152 (9%)
Query: 122 LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED-FPITSSPDF 180
L + +P + + + A + + E G+P+PTI W R D PI
Sbjct: 194 LRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARR 253
Query: 181 QIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFL 240
IL + ED+G + +AEN GK L P+++
Sbjct: 254 HKSN----GILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA----------QPNWV 299
Query: 241 TTISSAVINVGQLARFDAKISATKPLDVYWLK 272
I+ + + + ++ K + WLK
Sbjct: 300 QIINDIHVAMEESVFWECKANGRPKPTYRWLK 331
Score = 75.6 bits (186), Expect = 9e-16
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
P + + I ++ +E + +G P PT +W + P+ + QI + L
Sbjct: 295 QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLN 350
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
+ V + D+G++ +AEN+ G SA L V +
Sbjct: 351 ITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384
Score = 69.5 bits (170), Expect = 1e-13
Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 15/148 (10%)
Query: 130 PAKPPVFTKK---IQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS 186
P PVF ++ + E+ + + E G+P P I+W + DF+ ++
Sbjct: 2 PGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFR-YSVV 60
Query: 187 TKSILIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISS 245
S+LI +D+G + IA N G A L + T S+
Sbjct: 61 DGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQF---------AYLENFKTRTRST 111
Query: 246 AVINVGQLARFDAKISATKP-LDVYWLK 272
+ GQ L W+
Sbjct: 112 VSVRRGQGMVLLCGPPPHSGELSYAWIF 139
Score = 61.0 bits (148), Expect = 7e-11
Identities = 14/143 (9%), Positives = 31/143 (21%), Gaps = 4/143 (2%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
T+ + W ++P D + L
Sbjct: 102 ENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSY--QDNRRFVSQETGNL 159
Query: 192 IMRQVFMEDSGVFAVIAENR-GGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250
+ +V D G + + N + + G G P + +
Sbjct: 160 YIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEK 219
Query: 251 GQLARFDAKISATKPLDVYWLKV 273
G + + + W +
Sbjct: 220 GTTVKLECFALGNPVPTILWRRA 242
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 83.3 bits (206), Expect = 2e-18
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 19/148 (12%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD-------FQIHT 184
+P + +++ +E Q + +G+P+P I W R T + ++
Sbjct: 1 QPHI--IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKG 58
Query: 185 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTIS 244
S L ++ V + DSG + A +R G + S L +E P F++ +
Sbjct: 59 QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY----------APKFISNQT 108
Query: 245 SAVINVGQLARFDAKISATKPLDVYWLK 272
G + + P ++W +
Sbjct: 109 IYYSWEGNPINISCDVKSNPPASIHWRR 136
Score = 76.0 bits (187), Expect = 7e-16
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 2/96 (2%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST--KSI 190
P F ++E + + +P +I W R+ + + + T+ST K I
Sbjct: 100 APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI 159
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
L + D G + A N G L + +
Sbjct: 160 LEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADV 195
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 77.5 bits (191), Expect = 3e-18
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI-- 190
PP +P E E G+P PT+ W P+ S + + I
Sbjct: 8 PPRVVSLEEPELRLE---HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 64
Query: 191 --LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
L+ + ++G + +IA+N G A + N ++
Sbjct: 65 GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 102
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 79.9 bits (197), Expect = 3e-18
Identities = 21/156 (13%), Positives = 39/156 (25%), Gaps = 15/156 (9%)
Query: 123 SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI 182
S + T + + G P +WF+ + I +
Sbjct: 8 HHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT--- 64
Query: 183 HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGV-----VP 236
S LI V ++D+G + N + L V + + + V
Sbjct: 65 ------SELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESK 118
Query: 237 PSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
+S + G + W K
Sbjct: 119 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK 154
Score = 68.0 bits (166), Expect = 7e-14
Identities = 15/131 (11%), Positives = 34/131 (25%), Gaps = 19/131 (14%)
Query: 122 LSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ 181
+ + + + G P+P +WF+ + P+T
Sbjct: 107 FQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTH----- 161
Query: 182 IHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLT 241
TK + ++ V +E G + N ++ + + L
Sbjct: 162 ----ETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII----------IDELNNLG 207
Query: 242 TISSAVINVGQ 252
+ Q
Sbjct: 208 HPDNKEQTTDQ 218
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 79.1 bits (195), Expect = 3e-18
Identities = 19/144 (13%), Positives = 39/144 (27%), Gaps = 14/144 (9%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI-- 190
+ + +G P I+W ++ + + I I
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSAVIN 249
L ++ V D+G + E+ G L VE P F +
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE----------GVPFFTVEPKDLAVP 111
Query: 250 VGQLARFDAKISAT-KPLDVYWLK 272
+ + +P+ + W +
Sbjct: 112 PNAPFQLSCEAVGPPEPVTIVWWR 135
Score = 60.2 bits (146), Expect = 2e-11
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 11/94 (11%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITSSPDFQIHTFSTKSIL 191
P FT + + + E G P P TI W+R I S
Sbjct: 98 VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---------SPS 148
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKC-SANLVVE 224
++ + S +F+ A N G A +A + ++
Sbjct: 149 VLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 76.7 bits (189), Expect = 3e-18
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 5/98 (5%)
Query: 131 AKPPVFTKKIQPCRAF----EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS 186
+ P +T + + + +F G+P+PT++W + +
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 61
Query: 187 T-KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
LIM V D G + + EN G + +L V
Sbjct: 62 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 82.3 bits (203), Expect = 4e-18
Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 12/147 (8%)
Query: 128 QKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST 187
+ P +P G P P+ +W++ T ++
Sbjct: 207 ISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVK 266
Query: 188 KS--ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISS 245
+ LI++ +EDSG + + N G L V P S +
Sbjct: 267 QVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA----------PLSAKIDPPT 316
Query: 246 AVINVGQLARFDAKISATKPLDVYWLK 272
++ G+ A F + + V W+K
Sbjct: 317 QTVDFGRPAVFTCQYTGNPIKTVSWMK 343
Score = 67.3 bits (164), Expect = 7e-13
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
P A F ++ G+P+ T+ W ++ I S S+L
Sbjct: 307 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLR 356
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
+ V ED G++ N A+ SA L +
Sbjct: 357 IESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 64.2 bits (156), Expect = 7e-12
Identities = 29/150 (19%), Positives = 44/150 (29%), Gaps = 18/150 (12%)
Query: 132 KPPVFTKKIQPCRAFEQDQ-ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
K PVF K+ F A E + G+P+P I W R D S +
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 191 LIMR-----QVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISS 245
+ + V+A +A N+ G V VV + ++
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA---------VVAQYYEADVNK 112
Query: 246 AVINVGQLARFDAKISATKPL---DVYWLK 272
+ G A I + V W
Sbjct: 113 EHVIRGNSAVIKCLIPSFVADFVEVVSWHT 142
Score = 58.4 bits (141), Expect = 5e-10
Identities = 22/165 (13%), Positives = 44/165 (26%), Gaps = 14/165 (8%)
Query: 129 KPAKPPVFTKKIQPCRAFEQDQARFE---VEFDGDPLPTIKWFREDFPITSSPDFQIHTF 185
+ + + + A + F D + + W ++ +
Sbjct: 99 RAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKY 158
Query: 186 STKS--ILIMRQVFMEDS-GVFAVIAENR-GGKAKCSAN---LVVEEKRQGGRGGVVPPS 238
L +R+V ED + ++R G+ + SA LV+ E P +
Sbjct: 159 LVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITE----PISSSAPRT 214
Query: 239 FLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSDVKRGV 283
+ V W K + K+ V
Sbjct: 215 PALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAV 259
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 81.1 bits (200), Expect = 1e-17
Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 16/147 (10%)
Query: 126 SEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF 185
+ + P + K A E G+P+P IKW + D TS
Sbjct: 200 EDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS------KWL 253
Query: 186 STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISS 245
S++ +L ++ V ED G + AEN G+ +++ P +L I+
Sbjct: 254 SSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA----------QPDWLDVITD 303
Query: 246 AVINVGQLARFDAKISATKPLDVYWLK 272
++G R+ S V WL+
Sbjct: 304 TEADIGSDLRWSCVASGKPRPAVRWLR 330
Score = 76.4 bits (188), Expect = 4e-16
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
P + I A R+ G P P ++W R+ P+ S ++ + L
Sbjct: 294 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV----SGGELR 349
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
++ +EDSG++ +AEN+ G SA L V+
Sbjct: 350 FSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Score = 70.7 bits (173), Expect = 4e-14
Identities = 26/145 (17%), Positives = 43/145 (29%), Gaps = 15/145 (10%)
Query: 133 PPVFTKKIQPCRAFE---QDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS 189
PVF ++ E +++ +P T +W + PD +
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRY-RLVAGD 62
Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAKC-SANLVVEEKRQGGRGGVVPPSFLTTISSAVI 248
++I V +D+G + +A N G A+L G + I
Sbjct: 63 LVISNPVKAKDAGSYQCVATNARGTVVSREASLRF---------GFLQEFSAEERDPVKI 113
Query: 249 NVGQLARFDAKISATKP-LDVYWLK 272
G F P L WL
Sbjct: 114 TEGWGVMFTCSPPPHYPALSYRWLL 138
Score = 60.6 bits (147), Expect = 9e-11
Identities = 19/146 (13%), Positives = 37/146 (25%), Gaps = 3/146 (2%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
++ P + E F P + +W +FP D + T L
Sbjct: 101 QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNL 160
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGV--VPPSFLTTISSAVIN 249
+ + D G ++ A + S + P +
Sbjct: 161 YIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYAL 220
Query: 250 VGQLARFDAKISATKPLDVYWLKVSS 275
GQ+ + + W K+
Sbjct: 221 TGQMVTLECFAFGNPVPQIKWRKLDG 246
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 75.6 bits (186), Expect = 1e-17
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 8/99 (8%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK---- 188
P T P G+P P ++WF + S T
Sbjct: 4 APTITFLESP---TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60
Query: 189 -SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
L + ++G + +IA+N GK + +
Sbjct: 61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 74.4 bits (183), Expect = 3e-17
Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 6/107 (5%)
Query: 123 SDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI 182
S S K + +A A E + W+++ ++SS ++
Sbjct: 2 SSGSSGKVV-FAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRV 59
Query: 183 HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQG 229
L+++Q ++G ++ A G + S L V + G
Sbjct: 60 EAVGCTRRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQVAGQCFG 102
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 74.0 bits (182), Expect = 4e-17
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 130 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPI-TSSPDFQIHTFSTK 188
+ PP+ + A + + GDPLP I W +E F P I T
Sbjct: 5 SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGT- 63
Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
L ++ + + D+G + +A + G+ SA L V E
Sbjct: 64 --LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
Score = 27.7 bits (62), Expect = 1.5
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 236 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
PP L ++ + V A K + + WLK
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLK 44
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 77.6 bits (191), Expect = 9e-17
Identities = 25/142 (17%), Positives = 40/142 (28%), Gaps = 11/142 (7%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
+F P E + A + PTI W + + D + S + I
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI 159
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTT--ISSAVINV 250
R + D G + ++ V VPP+ I +A N+
Sbjct: 160 -RGIKKTDEGTYRCEGRILARGEINFKDIQVIVN--------VPPTVQARQSIVNATANL 210
Query: 251 GQLARFDAKISATKPLDVYWLK 272
GQ + W K
Sbjct: 211 GQSVTLVCDADGFPEPTMSWTK 232
Score = 63.0 bits (153), Expect = 9e-12
Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 4/98 (4%)
Query: 133 PPVFTKKIQPCR--AFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST--K 188
PP + A + DG P PT+ W ++ PI + + +
Sbjct: 194 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS 253
Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
S L +R V D + IAEN+ G+ S +L V K
Sbjct: 254 SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291
Score = 59.1 bits (143), Expect = 2e-10
Identities = 19/146 (13%), Positives = 41/146 (28%), Gaps = 15/146 (10%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPL-PTIKWFREDFPITSSPDFQI---HTFST 187
+ + F + GD I WF + S +I
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 188 KSILIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSA 246
S L + ++D+G++ + G + N+ + + F +
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ----------KLMFKNAPTPQ 110
Query: 247 VINVGQLARFDAKISATKPLDVYWLK 272
G+ A + ++ P + W
Sbjct: 111 EFKEGEDAVIVCDVVSSLPPTIIWKH 136
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 72.9 bits (179), Expect = 2e-16
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD-FQIHTFSTKSIL 191
PPV + G P+PTI W ++ +++ + L
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV---L 64
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
+R + D+G + IA G+A SA + V+E
Sbjct: 65 QIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEF 99
Score = 26.3 bits (58), Expect = 6.5
Identities = 7/44 (15%), Positives = 12/44 (27%)
Query: 229 GGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
G G PP + + V + + + W K
Sbjct: 1 GSSGSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRK 44
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 74.9 bits (184), Expect = 3e-16
Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 5/106 (4%)
Query: 126 SEQKPAKPPVFTKKIQP---CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD--F 180
S P ++ K+Q +E +Q E P TI WFR+ + SS
Sbjct: 8 SALVPRGSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNI 67
Query: 181 QIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
+I+ + S L + D G + A NR G+ LV +
Sbjct: 68 KIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADT 113
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 74.5 bits (183), Expect = 3e-16
Identities = 26/147 (17%), Positives = 54/147 (36%), Gaps = 15/147 (10%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF----ST 187
+ P + + + A + +G P PTI+WF++ P++++ +
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 188 KSILIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSA 246
M+ +D G + +A+NR G+A A+L + V+ F
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA---------VLRDDFRVEPKDT 118
Query: 247 VINVGQLARFD-AKISATKPLDVYWLK 272
+ G+ A + + W+K
Sbjct: 119 RVAKGETALLECGPPKGIPEPTLIWIK 145
Score = 63.3 bits (154), Expect = 4e-12
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 7/103 (6%)
Query: 133 PPVFTKKIQPCRAFEQDQARFE-VEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI- 190
F + + R + + A E G P PT+ W ++ P+ S I
Sbjct: 108 RDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV 167
Query: 191 ----LIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQ 228
L++ V D G + IA+N G + A L+V+ K
Sbjct: 168 DGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAA 210
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 72.0 bits (177), Expect = 4e-16
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
Query: 128 QKPAKPPVFT---KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHT 184
++ A+PP Q +Q V F G P P + W + P+ +S + T
Sbjct: 16 REIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTS-RVHVRT 74
Query: 185 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
++ +RQ DSG + + + K + + V EK
Sbjct: 75 SDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 73.7 bits (181), Expect = 4e-16
Identities = 19/142 (13%), Positives = 36/142 (25%), Gaps = 18/142 (12%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLP--TIKWFREDFPITSSPDFQIHTFSTKSI 190
P + + W + +T++ ++
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT-----RKNASNME 57
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250
+ + EDSG + + + K +A + V+ P S N
Sbjct: 58 YRINKPRAEDSGEYHCVY-HFVSAPKANATIEVK----------AAPDITGHKRSENKNE 106
Query: 251 GQLARFDAKISATKPLDVYWLK 272
GQ A K + W K
Sbjct: 107 GQDAMMYCKSVGYPHPEWMWRK 128
Score = 71.4 bits (175), Expect = 2e-15
Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 6/97 (6%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD-----FQIHTFST 187
P T + E A + G P P W +++ + F I
Sbjct: 92 APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKEN 151
Query: 188 KSIL-IMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
+ L I+ ED G + A N G A S L V
Sbjct: 152 YTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 31.4 bits (71), Expect = 0.23
Identities = 5/40 (12%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 235 VPPSFLTTISSAVINVGQLARFDAKISATKP--LDVYWLK 272
P +T+ + + ++++ + YW K
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTK 41
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 74.2 bits (182), Expect = 4e-16
Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 15/131 (11%)
Query: 105 ELDDDGYY-------AITERKYYALSDLSEQKPAK----PPVFTKKIQPCRAFEQDQARF 153
E D G Y +IT+ + L P + + A
Sbjct: 74 EASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTL 133
Query: 154 EVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG 213
E G+P+P I+W + P+ S+ + ++L + + +ED G++ AEN G
Sbjct: 134 ECFALGNPVPDIRWRKVLEPMPSTAEISTS----GAVLKIFNIQLEDEGIYECEAENIRG 189
Query: 214 KAKCSANLVVE 224
K K A + V+
Sbjct: 190 KDKHQARIYVQ 200
Score = 64.9 bits (158), Expect = 7e-13
Identities = 18/142 (12%), Positives = 37/142 (26%), Gaps = 2/142 (1%)
Query: 133 PPVFTKKIQPCRAFEQDQARFE--VEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
P ++ R E + + +W +FP+ + D + T
Sbjct: 8 DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN 67
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250
L + V D G ++ + + + P + +
Sbjct: 68 LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALM 127
Query: 251 GQLARFDAKISATKPLDVYWLK 272
GQ + D+ W K
Sbjct: 128 GQNVTLECFALGNPVPDIRWRK 149
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 75.5 bits (185), Expect = 1e-15
Identities = 15/148 (10%), Positives = 39/148 (26%), Gaps = 8/148 (5%)
Query: 102 DASELDDDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDP 161
D+S Y ++E L Q + +V D
Sbjct: 21 DSSVGKSSSYPMVSESPEDLGCALRPQ----SSGTVYEAAAVEVDVSASITLQVLVDAPG 76
Query: 162 LPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL 221
+ W + + P F + S +++ ++ +G + + ++ +
Sbjct: 77 NISCLWVFKHSSLNCQPHFDLQNRGVVS-MVILKMTETQAGEYLLFIQSEATNYTILFTV 135
Query: 222 VVEEKRQGGRGGVVPPSFLTTISSAVIN 249
+ + P F + +
Sbjct: 136 SIRNTL---LYTLRRPYFRKMENQDALV 160
Score = 68.9 bits (168), Expect = 2e-13
Identities = 18/149 (12%), Positives = 39/149 (26%), Gaps = 22/149 (14%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVE-FDGDPLPTIKWFREDFPITSSPDFQIHTFST---- 187
+ + + + + W E+ + F++ T+ST
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTM 286
Query: 188 --KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISS 245
+ V D+G + + + SA + + E T SS
Sbjct: 287 IRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVE----------KGFINATNSS 333
Query: 246 AVINV--GQLARFDAKISATKPLDVYWLK 272
+ + F + A + W
Sbjct: 334 EDYEIDQYEEFCFSVRFKAYPQIRCTWTF 362
Score = 63.9 bits (155), Expect = 8e-12
Identities = 10/96 (10%), Positives = 17/96 (17%), Gaps = 6/96 (6%)
Query: 133 PPVFTKKIQPCRAF--EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
+ ++ F V F P W
Sbjct: 324 KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE----QKGLDNGYS 379
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
+ G + AEN + L +
Sbjct: 380 ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415
Score = 54.3 bits (130), Expect = 1e-08
Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 17/141 (12%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
++T + R E +Q + P P ++W D S + K +
Sbjct: 140 TLLYTLRRPYFRKME-NQDALVCISESVPEPIVEWVLCDSQGESCKEES-PAVVKKEEKV 197
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ 252
+ ++F D A N G+ + + + TT+ + VG+
Sbjct: 198 LHELFGTD---IRCCARNELGRECTRLFTI-----------DLNQTPQTTLPQLFLKVGE 243
Query: 253 LARFDAKISATKPL-DVYWLK 272
K + W
Sbjct: 244 PLWIRCKAVHVNHGFGLTWEL 264
Score = 31.6 bits (71), Expect = 0.29
Identities = 11/83 (13%), Positives = 25/83 (30%), Gaps = 6/83 (7%)
Query: 196 VFMEDSGVFAVIAENRG----GKAKCSANLVVEEKRQGGRGGVVP--PSFLTTISSAVIN 249
+D V + N K S+ +V E + + P + ++ ++
Sbjct: 2 TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVD 61
Query: 250 VGQLARFDAKISATKPLDVYWLK 272
V + A + W+
Sbjct: 62 VSASITLQVLVDAPGNISCLWVF 84
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 75.6 bits (186), Expect = 1e-15
Identities = 22/104 (21%), Positives = 36/104 (34%)
Query: 120 YALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD 179
Y++ D + P F K E A F P + W ++D + S
Sbjct: 469 YSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVK 528
Query: 180 FQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
+ L + +V +D G + V A+N G + L V
Sbjct: 529 YMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 29.0 bits (65), Expect = 2.0
Identities = 18/110 (16%), Positives = 28/110 (25%), Gaps = 6/110 (5%)
Query: 166 KWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
W D QI + I + + + R +E
Sbjct: 412 PWLTPG--NAPGRDSQIPSSRYTKIRDSIKTKYDAWPE-PLPPLGRISNYSSLRKHRPQE 468
Query: 226 KRQGGR---GGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
P F+ + GQ A F ++ A+ P V W K
Sbjct: 469 YSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHK 518
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 72.5 bits (178), Expect = 2e-15
Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 18/149 (12%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS---PDFQIHTFSTKS 189
PP + + + A + +G P PTI+W++ + + P + S
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 190 ILIMR----QVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTIS 244
+ +R + D GV+ +A N G+A A+L V ++ F S
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA---------ILRDDFRQNPS 119
Query: 245 SAVINVGQLARFDAK-ISATKPLDVYWLK 272
++ VG+ A + + + W K
Sbjct: 120 DVMVAVGEPAVMECQPPRGHPEPTISWKK 148
Score = 64.4 bits (157), Expect = 1e-12
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 15/112 (13%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVE-FDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
F + + A E + G P PTI W ++ P+ + L
Sbjct: 111 RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERIT---IRGGKL 167
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCS-ANLVVEEKRQGGRGGVVPPSFLTT 242
++ D+G + + N G+ + A L V E PSF+
Sbjct: 168 MITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE----------RPSFVKA 209
Score = 31.3 bits (71), Expect = 0.25
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 235 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
PP + S +++ G+ A + K + W K
Sbjct: 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYK 45
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 69.3 bits (170), Expect = 2e-15
Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 8/99 (8%)
Query: 130 PAKPPVF---TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS 186
+ PV + ++ E W+++ + S +
Sbjct: 4 GSSGPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDG 62
Query: 187 TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
K LI+ + ++DSG F E + V++
Sbjct: 63 RKHRLILPEAKVQDSGEFECRTEG----VSAFFGVTVQD 97
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 69.3 bits (169), Expect = 5e-15
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 12/110 (10%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPL---PTIKWFREDF---------PITSSP 178
+ +F +K Q + F + + L PTIKWF+ + +
Sbjct: 5 SSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKE 64
Query: 179 DFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQ 228
F+ H+ + + + +G + + CS +L V E
Sbjct: 65 TFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTG 114
Score = 30.3 bits (68), Expect = 0.32
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 230 GRGGVVPPSFLTTISSAVINVGQLARFDAKISA----TKPLDVYWLK 272
G G F+ + VG+ F AK+ A KP + W K
Sbjct: 1 GSSGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKP-TIKWFK 46
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 68.2 bits (167), Expect = 5e-15
Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 9/91 (9%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
+ + E P P I W ++ P+ P +LI
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPS---------PVLI 60
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
+ ++ +D G ++ +A + + S + +
Sbjct: 61 LPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 29.3 bits (66), Expect = 0.46
Identities = 6/46 (13%), Positives = 13/46 (28%), Gaps = 2/46 (4%)
Query: 229 GGRGGVV--PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
G G + + G ++ A ++W+K
Sbjct: 1 GSSGSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMK 46
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 68.9 bits (168), Expect = 7e-15
Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 14/126 (11%)
Query: 115 TERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPI 174
+ ++ S L + F + + + E G P+P I+W+ E
Sbjct: 4 SHHHHHHSSGLVPRGSH-MAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGP 62
Query: 175 TSSP-------------DFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL 221
+ S + + + ED+G + A N + +
Sbjct: 63 NDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAP 122
Query: 222 VVEEKR 227
V+ R
Sbjct: 123 RVKWVR 128
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 70.2 bits (172), Expect = 8e-15
Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 1/92 (1%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
+F P E + A + PTI W + + D + S + I
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI 159
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
R + D G + ++ V
Sbjct: 160 -RGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 69.1 bits (169), Expect = 2e-14
Identities = 17/146 (11%), Positives = 41/146 (28%), Gaps = 15/146 (10%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPL-PTIKWFRED---FPITSSPDFQIHTFST 187
+ + F + GD I WF + +
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 188 KSILIMRQVFMEDSGVFAVIAENR-GGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSA 246
S L + ++D+G++ + G +++ + N+ + F +
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI----------FQKLMFKNAPTPQ 110
Query: 247 VINVGQLARFDAKISATKPLDVYWLK 272
G+ A + ++ P + W
Sbjct: 111 EFKEGEDAVIVCDVVSSLPPTIIWKH 136
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 72.3 bits (177), Expect = 2e-14
Identities = 14/142 (9%), Positives = 33/142 (23%), Gaps = 18/142 (12%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
P T +P W + +
Sbjct: 379 YGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT-----------QE 427
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250
L + + ++SG++ A N + + + +P +++ +S +
Sbjct: 428 LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAE------LPKPSISSNNSKPVED 481
Query: 251 GQLARFDAKISATKPLDVYWLK 272
F + A W
Sbjct: 482 KDAVAFTCEPEAQ-NTTYLWWV 502
Score = 65.4 bits (159), Expect = 4e-12
Identities = 17/144 (11%), Positives = 36/144 (25%), Gaps = 13/144 (9%)
Query: 130 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS 189
P ++D F E + + W+ + SP Q+ +
Sbjct: 464 AELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYL-WWVNGQSLPVSPRLQL--SNGNR 520
Query: 190 ILIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSAVI 248
L + V D+ + +N + L V P + + + +
Sbjct: 521 TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYG---------PDTPIISPPDSSY 571
Query: 249 NVGQLARFDAKISATKPLDVYWLK 272
G ++ W
Sbjct: 572 LSGANLNLSCHSASNPSPQYSWRI 595
Score = 65.0 bits (158), Expect = 5e-12
Identities = 22/141 (15%), Positives = 36/141 (25%), Gaps = 13/141 (9%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
P F ++D E + T W+ + + SP Q+ + L
Sbjct: 289 PKPFITSNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDN--RTLT 345
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKC-SANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
+ V D G + +N L V P + S G
Sbjct: 346 LLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYG---------PDDPTISPSYTYYRPG 396
Query: 252 QLARFDAKISATKPLDVYWLK 272
++ P WL
Sbjct: 397 VNLSLSCHAASNPPAQYSWLI 417
Score = 60.4 bits (146), Expect = 2e-10
Identities = 19/149 (12%), Positives = 38/149 (25%), Gaps = 17/149 (11%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
P T + +P WF S+ + I
Sbjct: 203 PDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFI---------- 252
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ 252
+ + +SG + A N + + + P F+T+ +S +
Sbjct: 253 -PNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAE------PPKPFITSNNSNPVEDED 305
Query: 253 LARFDAKISATKPLDVYWLKVSSLSDVKR 281
+ ++W+ SL R
Sbjct: 306 AVALTCEPEIQNTTYLWWVNNQSLPVSPR 334
Score = 60.4 bits (146), Expect = 2e-10
Identities = 10/92 (10%), Positives = 20/92 (21%), Gaps = 11/92 (11%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
P +P P W P + +L
Sbjct: 558 GPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHT-----------QVL 606
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
+ ++ ++G +A N S +
Sbjct: 607 FIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638
Score = 58.4 bits (141), Expect = 7e-10
Identities = 21/145 (14%), Positives = 40/145 (27%), Gaps = 13/145 (8%)
Query: 129 KPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK 188
P P ++D F E + T W+ + + SP Q+ +
Sbjct: 107 YPELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLS--NGN 163
Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSAV 247
L + V D+ + +N + S L V P + + +
Sbjct: 164 RTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNV---------LYGPDAPTISPLNTS 214
Query: 248 INVGQLARFDAKISATKPLDVYWLK 272
G+ ++ P W
Sbjct: 215 YRSGENLNLSCHAASNPPAQYSWFV 239
Score = 43.0 bits (101), Expect = 8e-05
Identities = 15/154 (9%), Positives = 41/154 (26%), Gaps = 26/154 (16%)
Query: 136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI----- 190
T + P E + V L W++ + + + ++
Sbjct: 2 LTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAY 61
Query: 191 -----------LIMRQVFMEDSGVFAVIAENR-GGKAKCSANLVVEEKRQGGRGGVVPPS 238
L+++ + D+G + + + + V +P
Sbjct: 62 SGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYP--------ELPKP 113
Query: 239 FLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
+++ +S + F + T+ W
Sbjct: 114 SISSNNSKPVEDKDAVAFTCEPE-TQDATYLWWV 146
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 69.2 bits (169), Expect = 2e-14
Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 133 PPVFTKKIQPCRAFEQDQARFE-VEFDGDPLPTIKWFREDFPITSSPDFQI-------HT 184
PP P A ++A E DG P WF++ + ++P
Sbjct: 107 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 166
Query: 185 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
T L+ + D+G ++ A N G S + +E
Sbjct: 167 NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 206
Score = 66.1 bits (161), Expect = 3e-13
Identities = 25/150 (16%), Positives = 42/150 (28%), Gaps = 19/150 (12%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI---------H 183
R E + + + G P ++W + T +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 184 TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTI 243
TF I + V ED+G + + GG + + + VPPS T
Sbjct: 64 TFLPTGITF-KSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL--------VPPSKPTVN 114
Query: 244 SSAVINVGQLARFDAKISATKP-LDVYWLK 272
+ +G A P + W K
Sbjct: 115 IPSSATIGNRAVLTCSEQDGSPPSEYTWFK 144
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 70.9 bits (173), Expect = 5e-14
Identities = 18/149 (12%), Positives = 37/149 (24%), Gaps = 22/149 (14%)
Query: 130 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSPDFQI-----H 183
+F + + VE++ P P +W + T +
Sbjct: 310 KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENES 369
Query: 184 TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTI 243
S L + ++ + G + + N A + N+ V P LT
Sbjct: 370 NIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN----------TKPEILTY- 418
Query: 244 SSAVINVGQLARFDAKISATKPLDVYWLK 272
+ + + W
Sbjct: 419 -----DRLVNGMLQCVAAGFPEPTIDWYF 442
Score = 70.5 bits (172), Expect = 6e-14
Identities = 26/187 (13%), Positives = 44/187 (23%), Gaps = 20/187 (10%)
Query: 99 RVVDASELDDDGYY------AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQAR 152
+ PV + E ++
Sbjct: 171 MIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFT 230
Query: 153 FEVEFDGDPLPT-IKWFREDFPITSSPDFQIHTFST-----KSILIMRQVFMEDSGVFAV 206
W RE+ + ++ L + + DSGVF
Sbjct: 231 VTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMC 290
Query: 207 IAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KP 265
A N G A + L V +K F ++ +N G+ + A KP
Sbjct: 291 YANNTFGSANVTTTLEVVDKGF-------INIFPMINTTVFVNDGENVDLIVEYEAFPKP 343
Query: 266 LDVYWLK 272
W+
Sbjct: 344 EHQQWIY 350
Score = 52.0 bits (124), Expect = 9e-08
Identities = 16/142 (11%), Positives = 30/142 (21%), Gaps = 9/142 (6%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
P + E + DP T + D + I+I
Sbjct: 114 PAKLFLVDRSLYGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMI 172
Query: 193 MRQVFMEDSGVFAVIAENRGG-KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
+ G L V + P + +S ++ G
Sbjct: 173 KSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKA------VPVVSVSKASYLLREG 226
Query: 252 QLARFDAKISAT-KPLDVYWLK 272
+ I + W +
Sbjct: 227 EEFTVTCTIKDVSSSVYSTWKR 248
Score = 49.3 bits (117), Expect = 5e-07
Identities = 14/106 (13%), Positives = 25/106 (23%), Gaps = 18/106 (16%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWF-------REDFPITSSPDFQIHTF 185
P + + G P PTI W+ R + +++
Sbjct: 412 KPEILTYDRL------VNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSS 465
Query: 186 -----STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
+ + +G A N GK N +
Sbjct: 466 GPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGN 511
Score = 36.6 bits (84), Expect = 0.008
Identities = 18/140 (12%), Positives = 32/140 (22%), Gaps = 26/140 (18%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
PP D+ R G +KW E T+ + I
Sbjct: 36 PPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDETNENKQ--------NEWI 83
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ 252
+ ++G + ++ S + V P S
Sbjct: 84 TEKAEATNTGKYTCTNKHGLSN---SIYVFVR----------DPAKLFLVDRSLYGKEDN 130
Query: 253 LARFDAKISATKPLDVYWLK 272
++ + Y LK
Sbjct: 131 DTLVRCPLTDP-EVTNYSLK 149
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 68.0 bits (166), Expect = 5e-14
Identities = 19/154 (12%), Positives = 42/154 (27%), Gaps = 24/154 (15%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFE--VEFDGDPLPTIKWFREDFPITSSPDFQIHT----- 184
+ F ++ G+P P + W R+ + + Q
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEP-PEVHWLRDGQILELADSTQTQVPLGED 59
Query: 185 ----FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC-SANLVVEEKRQGGRGGVVPPSF 239
+ S L + + + D+G + + + +E P F
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE----------GLPYF 109
Query: 240 LTTISSAVINVGQLARFDAKISAT-KPLDVYWLK 272
L + + +P+D+ WL+
Sbjct: 110 LEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQ 143
Score = 59.1 bits (143), Expect = 7e-11
Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 18/106 (16%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSPDFQIHTFSTKSIL 191
P F ++ + + G P P + W ++ P+ ++P +S+
Sbjct: 106 LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP----GHGPQRSLH 161
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPP 237
+ + + F+ A N G + V+P
Sbjct: 162 VPG---LNKTSSFSCEAHNAKGVTTSRTATIT----------VLPQ 194
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 70.5 bits (172), Expect = 6e-14
Identities = 18/148 (12%), Positives = 30/148 (20%), Gaps = 24/148 (16%)
Query: 133 PPVF--TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
T + + ++ F V F P W + +S
Sbjct: 324 KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYS---- 379
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250
+ G + AEN + L + P L
Sbjct: 380 ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR----------RKPQVLAE-------- 421
Query: 251 GQLARFDAKISATKPLDVYWLKVSSLSD 278
++ W K S S
Sbjct: 422 ASASQASCFSDGYPLPSWTWKKCSDKSP 449
Score = 66.3 bits (161), Expect = 2e-12
Identities = 18/147 (12%), Positives = 41/147 (27%), Gaps = 18/147 (12%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVE-FDGDPLPTIKWFREDFPITSSPDFQIHTFSTK--- 188
+ + + + + W E+ + F++ T+ST
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTM 286
Query: 189 ---SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISS 245
+ V D+G + + + SA + + EK G + +
Sbjct: 287 IRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEK-----GFINATNSSEDYE- 337
Query: 246 AVINVGQLARFDAKISATKPLDVYWLK 272
I+ + F + A + W
Sbjct: 338 --IDQYEEFCFSVRFKAYPQIRCTWTF 362
Score = 61.3 bits (148), Expect = 8e-11
Identities = 15/148 (10%), Positives = 39/148 (26%), Gaps = 8/148 (5%)
Query: 102 DASELDDDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDP 161
D+S Y ++E L Q + +V D
Sbjct: 21 DSSVGKSSSYPMVSESPEDLGCALRPQ----SSGTVYEAAAVEVDVSASITLQVLVDAPG 76
Query: 162 LPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL 221
+ W + + P F + S +++ ++ +G + + ++ +
Sbjct: 77 NISCLWVFKHSSLNCQPHFDLQNRGVVS-MVILKMTETQAGEYLLFIQSEATNYTILFTV 135
Query: 222 VVEEKRQGGRGGVVPPSFLTTISSAVIN 249
+ + P F + +
Sbjct: 136 SIRNTL---LYTLRRPYFRKMENQDALV 160
Score = 52.0 bits (124), Expect = 7e-08
Identities = 20/141 (14%), Positives = 41/141 (29%), Gaps = 17/141 (12%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
++T + R E +Q + P P ++W D S + K +
Sbjct: 140 TLLYTLRRPYFRKME-NQDALVCISESVPEPIVEWVLCDSQGESCKEES-PAVVKKEEKV 197
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ 252
+ + A N G+ C+ ++ + + TT+ + VG+
Sbjct: 198 LHE---LFGTDIRCCARNELGRE-CTRLFTID----------LNQTPQTTLPQLFLKVGE 243
Query: 253 LARFDAKISATKP-LDVYWLK 272
K + W
Sbjct: 244 PLWIRCKAVHVNHGFGLTWEL 264
Score = 46.6 bits (110), Expect = 4e-06
Identities = 15/106 (14%), Positives = 27/106 (25%), Gaps = 23/106 (21%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFR-------------EDFPITSSPD 179
P + ++ DG PLP+ W + E +
Sbjct: 415 KPQVLAEASA--------SQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANR 466
Query: 180 FQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
+ + S L M + + A N G + + L
Sbjct: 467 KVFGQWVSSSTLNMSEA--IKGFLVKCCAYNSLGTSCETILLNSPG 510
Score = 30.8 bits (69), Expect = 0.51
Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Query: 199 EDSGVFAVIAENRG----GKAKCSANLVVEEKRQGGRGGVVP--PSFLTTISSAVINVGQ 252
+D V + N K S+ +V E + + P + ++ ++V
Sbjct: 5 QDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSA 64
Query: 253 LARFDAKISATKPLDVYWLK 272
+ A + W+
Sbjct: 65 SITLQVLVDAPGNISCLWVF 84
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 65.5 bits (160), Expect = 6e-14
Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
+++ D + D +I W R+ + S +I T +
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRI----TGEEVE 57
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
++ DSG++A + + G ++ V +
Sbjct: 58 VQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDA 91
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 63.9 bits (155), Expect = 3e-13
Identities = 18/105 (17%), Positives = 28/105 (26%), Gaps = 12/105 (11%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPL---PTIKWFREDFPITSSPDFQIHTFSTK- 188
+F + Q F G L P +KWF+ + SS Q
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 189 --------SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
L + +G + + + NL V E
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
Score = 27.7 bits (61), Expect = 2.0
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 236 PPSFLTTISSAVINVGQLARFDAKISATKPL---DVYWLK 272
F+ + VG F A+++ L V W K
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFK 43
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 66.1 bits (161), Expect = 3e-13
Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 23/151 (15%)
Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI---------HT 184
+ E + + + G P ++W T+ + T
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 185 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSA--NLVVEEKRQGGRGGVVPPSFLTT 242
FS+ I V +D+G + + GG+ +L V VPPS T
Sbjct: 62 FSSSGITF-SSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL----------VPPSKPTI 110
Query: 243 ISSAVINVGQLARFD-AKISATKPLDVYWLK 272
+ + +G A ++ + P + W K
Sbjct: 111 SVPSSVTIGNRAVLTCSEHDGSPPSEYSWFK 141
Score = 65.4 bits (159), Expect = 6e-13
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 9/101 (8%)
Query: 133 PPVFTKKIQPCRAFEQDQARFE-VEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI- 190
PP P ++A E DG P WF++ + ++ + F S
Sbjct: 104 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 163
Query: 191 -------LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
LI V DSG + A+N G A S ++
Sbjct: 164 IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 204
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 62.7 bits (153), Expect = 4e-13
Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 10/94 (10%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
+ + + G P+P +WF+ + P+T TK + +
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTH---------ETKKLYM 53
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCS-ANLVVEE 225
+ V +E G + N ++++E
Sbjct: 54 VPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 87
Score = 25.8 bits (57), Expect = 6.0
Identities = 4/37 (10%), Positives = 7/37 (18%)
Query: 236 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
+S + G + W K
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK 39
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 62.5 bits (152), Expect = 7e-13
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
A+P +++ D + D +I W R+ + S +I T
Sbjct: 7 AQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRI----TGEE 61
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
+ +R DSG++A + + G ++ V
Sbjct: 62 VEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 62.7 bits (152), Expect = 1e-12
Identities = 17/124 (13%), Positives = 32/124 (25%), Gaps = 10/124 (8%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK---- 188
P + DG P P+++W + +
Sbjct: 3 MPASVQLHTAVEMHHWC---IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 59
Query: 189 ---SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISS 245
L + Q ++G + ++A N G+A S + P +T
Sbjct: 60 VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSGD 119
Query: 246 AVIN 249
V
Sbjct: 120 PVEK 123
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 64.8 bits (157), Expect = 3e-12
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 7/100 (7%)
Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK----- 188
F +Q A E DG P P+++W + +
Sbjct: 247 VSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 306
Query: 189 --SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
L + Q ++G + ++A N G+A S +
Sbjct: 307 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 346
Score = 57.4 bits (138), Expect = 1e-09
Identities = 12/92 (13%), Positives = 28/92 (30%), Gaps = 1/92 (1%)
Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIM 193
P ++ D + +G L W + +++ + + + +
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSAT-VMKSGGLPSLGLTLA 217
Query: 194 RQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
+ AEN G+A+ S + V
Sbjct: 218 NVTSDLNRKNVTCWAENDVGRAEVSVQVNVSF 249
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 62.4 bits (151), Expect = 7e-12
Identities = 8/88 (9%), Positives = 25/88 (28%), Gaps = 4/88 (4%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED----FPITSSPDFQIHTFSTK 188
P + + + + + P P ++W + P ++ +
Sbjct: 104 PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSL 163
Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAK 216
S+ + + + +N +A
Sbjct: 164 SVAVDLSLPKPWHLPVTCVGKNDKEEAH 191
Score = 50.0 bits (119), Expect = 1e-07
Identities = 16/131 (12%), Positives = 31/131 (23%), Gaps = 27/131 (20%)
Query: 159 GDPLPTIKWFREDFPITS-----------------SPDFQIHTFSTKSILIMRQVFMEDS 201
P + WF+ F IH + L++ +
Sbjct: 20 LGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 79
Query: 202 GVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKIS 261
G + + + +L V V P + + + ++
Sbjct: 80 GNYLCRMKLGETEVTKQEHLSV----------VKPLTLSVHSERSQFPDFSVLTVTCTVN 129
Query: 262 ATKPLDVYWLK 272
A V WL
Sbjct: 130 AFPHPHVQWLM 140
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 63.0 bits (153), Expect = 8e-12
Identities = 20/130 (15%), Positives = 40/130 (30%), Gaps = 9/130 (6%)
Query: 106 LDDDGYY------AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDG 159
+ D Y E + + +PP + + A+
Sbjct: 153 VLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATN 212
Query: 160 DPLPTIKWFRED---FPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK 216
+ + I + DFQ + + L + V +D+G+++ +A N G
Sbjct: 213 AEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRT 272
Query: 217 CSANLVVEEK 226
+ N V E
Sbjct: 273 ATMNFQVVES 282
Score = 58.4 bits (141), Expect = 3e-10
Identities = 23/146 (15%), Positives = 38/146 (26%), Gaps = 12/146 (8%)
Query: 130 PAKPPVFTKKIQPCRAFEQDQARFE--VEFDGDPLPTIKWFREDFPITSSPDFQIHTFST 187
+ Q E +A + D ++ RE ++ FS
Sbjct: 86 KDPAHSWNLLAQEVTVVEGQEAVLPCLIT-DPALKDSVSLMREGGRQV--LRKTVYFFSP 142
Query: 188 KSILIMRQVFMEDSGVFAVIAENRG-GKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSA 246
I+R+ + DS + G L V PP S
Sbjct: 143 WRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRV------HPEPPQIKLEPSKL 196
Query: 247 VINVGQLARFDAKISATKPLDVYWLK 272
V G+ A+ + + LK
Sbjct: 197 VRIRGEAAQIVCSATNAEVGFNVILK 222
Score = 42.6 bits (100), Expect = 7e-05
Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 19/141 (13%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
PV + +G +++W SP + + S S L
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPI-----SPYWTLDPESPGSTLT 54
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ 252
R +++G + + +L V++ S+ + GQ
Sbjct: 55 TRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDP---------AHSWNLLAQEVTVVEGQ 105
Query: 253 LARFDAKISATKPLD-VYWLK 272
A I+ D V ++
Sbjct: 106 EAVLPCLITDPALKDSVSLMR 126
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 63.1 bits (153), Expect = 1e-11
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 3/103 (2%)
Query: 127 EQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED---FPITSSPDFQIH 183
++ PP T + A+ + + + + I DF +
Sbjct: 180 QKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNN 239
Query: 184 TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
+ L + QV + +G ++ +A N GK S V E
Sbjct: 240 RYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVES 282
Score = 53.0 bits (127), Expect = 3e-08
Identities = 23/146 (15%), Positives = 39/146 (26%), Gaps = 11/146 (7%)
Query: 130 PAKPPVFTKKIQPCRAFEQDQARFE-VEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK 188
+ Q FE A + D + R ++FS
Sbjct: 86 KDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPL--MRHTNYSFSPW 143
Query: 189 SILIMRQVFMEDSGVFAVIAENRGG-KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAV 247
+ + S + A G S L V++ G PP+ + V
Sbjct: 144 HGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPG------PPALTLVPAELV 197
Query: 248 INVGQLARFDAKISAT-KPLDVYWLK 272
G+ A+ S+ DV+
Sbjct: 198 RIRGEAAQIVCSASSVDVNFDVFLQH 223
Score = 46.9 bits (111), Expect = 2e-06
Identities = 17/144 (11%), Positives = 41/144 (28%), Gaps = 19/144 (13%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
PV + +G +++W SP + +++ + SIL
Sbjct: 4 IPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPP-----SPHWTLYSDGSSSILS 54
Query: 193 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ 252
+++G + + +L V++ + V+ Q
Sbjct: 55 TNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDP---------ARPWNVLAQEVVVFEDQ 105
Query: 253 LARFDAKISATKP-LDVYWLKVSS 275
A ++ V ++V
Sbjct: 106 DALLPCLLTDPVLEAGVSLVRVRG 129
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 59.1 bits (143), Expect = 1e-11
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 13/100 (13%)
Query: 130 PAKPPVFTKKIQPCRAFEQDQARFEVEFD-----GDPLPTIKWFREDFPITSSPDFQIHT 184
P+KP + T + Q ++ +V F P T+ W R S
Sbjct: 6 PSKPIMVTVEEQRSQSVRPGA---DVTFICTAKSKSPAYTLVWTRLHNGKLPS-----RA 57
Query: 185 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
IL +R V D+G + N + +A L V+
Sbjct: 58 MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 62.8 bits (152), Expect = 1e-11
Identities = 19/151 (12%), Positives = 43/151 (28%), Gaps = 9/151 (5%)
Query: 128 QKPAKPPVFTKKIQPCRAFEQDQARFE------VEFDGDPLPTIKWFREDFPITSSPDFQ 181
+ + I + + + + LP ++W+++ P+
Sbjct: 98 ENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDN--- 154
Query: 182 IHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLT 241
IH K LI+ V + G + A + V+E P
Sbjct: 155 IHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSP 214
Query: 242 TISSAVINVGQLARFDAKISATKPLDVYWLK 272
+ +++G + ++ YW
Sbjct: 215 ANETMEVDLGSQIQLICNVTGQLSDIAYWKW 245
Score = 57.0 bits (137), Expect = 1e-09
Identities = 17/143 (11%), Positives = 32/143 (22%), Gaps = 24/143 (16%)
Query: 105 ELDDDGYY-----------AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARF 153
G Y + L E KP +P + + + Q +
Sbjct: 170 AEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQL 229
Query: 154 EVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK------------SILIMRQVFMED- 200
G W I + + ++L + ++
Sbjct: 230 ICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFY 289
Query: 201 SGVFAVIAENRGGKAKCSANLVV 223
F A+N G L+
Sbjct: 290 KHPFTCFAKNTHGIDAAYIQLIY 312
Score = 54.0 bits (129), Expect = 1e-08
Identities = 13/68 (19%), Positives = 23/68 (33%)
Query: 159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 218
+ TI W+++D S + K L +EDSG + + N +
Sbjct: 32 NEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK 91
Query: 219 ANLVVEEK 226
+ E
Sbjct: 92 ISAKFVEN 99
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 61.0 bits (147), Expect = 7e-11
Identities = 22/182 (12%), Positives = 49/182 (26%), Gaps = 19/182 (10%)
Query: 102 DASELDDDGYYA--ITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEF-D 158
+ + D Y +T + + + KPP + ++
Sbjct: 95 NYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILY 154
Query: 159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 218
I W++ + + + LI+ +EDSG + + K
Sbjct: 155 AKHYNNITWYKNNQELIID---GTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKND 211
Query: 219 ANLVVEEKRQGGRGGVVPPS----FLTTISSAVINVGQLARFDAKISAT----KPLDVYW 270
+ + V+P L + +G+ A +T + + W
Sbjct: 212 IVVSRCKILT-----VIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDW 266
Query: 271 LK 272
Sbjct: 267 EN 268
Score = 44.8 bits (105), Expect = 1e-05
Identities = 22/143 (15%), Positives = 35/143 (24%), Gaps = 26/143 (18%)
Query: 105 ELDDDGYY-------------AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQA 151
EL+D G Y I + L+ + Q + KI + A
Sbjct: 190 ELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKIN---VTIGEPA 246
Query: 152 RFEVEFDGDPLP----TIKWFREDFPITSSPDFQIHTFSTK-----SILIMRQVFMEDSG 202
L I W I ++ + L V E G
Sbjct: 247 NITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIG 306
Query: 203 -VFAVIAENRGGKAKCSANLVVE 224
+ N + +V+E
Sbjct: 307 NTYTCRGHNYYFDKTLTTTVVLE 329
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 56.1 bits (135), Expect = 2e-10
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 9/100 (9%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITSSPD--FQIHTFST-- 187
PP+ + Q A ++ + + P P I W ++ + S + + T ST
Sbjct: 14 PPIISST-QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 72
Query: 188 --KSILIMRQVFMED-SGVFAVIAENRGGKAKCSANLVVE 224
S L + + D ++ A N G L +
Sbjct: 73 GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 112
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 53.7 bits (129), Expect = 2e-09
Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 18/115 (15%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD---FQIHTFSTKS 189
PP + + + A + +G P PTI+W++ + + D + S
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 190 ILIMR----QVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSF 239
+ +R + D GV+ +A N G+A A+L V
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA----------AAAHH 113
Score = 28.2 bits (63), Expect = 1.4
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 235 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
PP + S +++ G+ A + K + W K
Sbjct: 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYK 45
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 53.6 bits (128), Expect = 3e-09
Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 30/129 (23%)
Query: 127 EQKPA-KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD------ 179
++ P + ++ R +V GDP PT+ W + +P
Sbjct: 11 QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDA 70
Query: 180 -----------------------FQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK 216
++ T +SI + ED GV+ V +N G+ +
Sbjct: 71 PEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQ 130
Query: 217 CSANLVVEE 225
+ + V +
Sbjct: 131 VNLTVKVID 139
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 54.4 bits (130), Expect = 8e-09
Identities = 17/135 (12%), Positives = 39/135 (28%), Gaps = 21/135 (15%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGD-PLP---TIKWFREDFPITSSPDFQIHTFSTK 188
+ + D GD PLP T W ++D P ++
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT---------- 51
Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVI 248
+ L + E++G + V ++ + + + E+ +T +
Sbjct: 52 ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEA-------ELIVNITEPQHFYV 104
Query: 249 NVGQLARFDAKISAT 263
+ A + +
Sbjct: 105 SSQTDVELHATVKFS 119
Score = 46.0 bits (108), Expect = 5e-06
Identities = 16/129 (12%), Positives = 32/129 (24%), Gaps = 29/129 (22%)
Query: 130 PAKPPVFTKKIQPCRAFEQDQARFEVEFD---GDPLP-----TIKWFREDFPITSSPDFQ 181
A+ V + Q Q G W + + I ++ D
Sbjct: 89 EAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDIT 148
Query: 182 IHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLT 241
I F+ + +GV+ V + SA+ + ++ +
Sbjct: 149 IQEFTA-----------DKNGVYTVKVWGESEDSAASASTKI----------MLATMNVD 187
Query: 242 TISSAVINV 250
V
Sbjct: 188 QDVVESKTV 196
Score = 31.0 bits (69), Expect = 0.44
Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 4/42 (9%)
Query: 235 VPPSFLTTISSAVINVGQLARFDAKISATKP----LDVYWLK 272
+ + + G A ++ +P L W K
Sbjct: 1 MAFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTK 42
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 53.9 bits (129), Expect = 1e-08
Identities = 20/147 (13%), Positives = 39/147 (26%), Gaps = 16/147 (10%)
Query: 133 PPVFTKKIQPCRAFEQDQARFE-VEFDGDPLPTIKWFREDFPITSSPDFQIH---TFSTK 188
P T ++Q + + V G P I W + + ++ T +
Sbjct: 117 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVT 176
Query: 189 SILIMRQVFMEDSGVFAVIAENRGGKA--KCSANLVVEEKRQGGRGGVVPPSFLTTISSA 246
S+ I+ D E+ + + NL V P ++ +
Sbjct: 177 SLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY---------YPPEVSISGYDNN 227
Query: 247 VINVGQLARFDAKISAT-KPLDVYWLK 272
A + +P W
Sbjct: 228 WYLGQNEATLTCDARSNPEPTGYNWST 254
Score = 47.8 bits (113), Expect = 1e-06
Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 7/93 (7%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSPDFQIHTFSTKSI 190
P V Q++A + +P PT W P+ + +
Sbjct: 216 PPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPP------FAVAQGAQ 269
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
L++R V + N G + + V
Sbjct: 270 LLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 54.3 bits (131), Expect = 1e-08
Identities = 25/92 (27%), Positives = 37/92 (40%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
+ + +K Q E +F DGDP P I W + S+ T L
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTL 443
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
+R ++D+G + IA N GG A+L V
Sbjct: 444 EVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 52.8 bits (126), Expect = 2e-08
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 3/94 (3%)
Query: 133 PPVFTKKIQPCRAFEQDQARFE-VEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 191
P T+ + + + +G +W + T + T ++
Sbjct: 121 KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPW--LAEMTSPVI 178
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
++ E SG ++ +NR G +C L V
Sbjct: 179 SVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212
Score = 43.9 bits (103), Expect = 2e-05
Identities = 23/164 (14%), Positives = 40/164 (24%), Gaps = 39/164 (23%)
Query: 141 QPCRAFEQDQARFEVEFDGDPLPT----IKWFREDFPITSSPDFQIHTF----------- 185
Q + + A +F P I+W I
Sbjct: 8 QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPD 67
Query: 186 -------------STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRG 232
S + + + + + D G + + G A L V
Sbjct: 68 LKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTV--------- 118
Query: 233 GVVPPSFLTTISSAVINVGQLARFDAKISA-TKPLDVYWLKVSS 275
+V PS +G + + + PL W K+S
Sbjct: 119 -LVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSD 161
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 50.6 bits (120), Expect = 2e-08
Identities = 25/114 (21%), Positives = 38/114 (33%), Gaps = 12/114 (10%)
Query: 126 SEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPL---PTIKWFR---EDFPITSSPD 179
S VF KK A + +G L PTIKWF+ + S
Sbjct: 5 SSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGAR 64
Query: 180 FQIHTFSTKSI------LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKR 227
F + L + +V + D G + + + + C N+ VE R
Sbjct: 65 FSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 52.1 bits (124), Expect = 6e-08
Identities = 28/179 (15%), Positives = 47/179 (26%), Gaps = 20/179 (11%)
Query: 105 ELDDDGYY---AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEF---- 157
EL+D+G Y T S L+ AKP + + Q ++ Q +
Sbjct: 100 ELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTS 159
Query: 158 -DGDPLPTIKWFRED--FPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGK 214
+G P + W T + S + A I +
Sbjct: 160 ANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDR 219
Query: 215 AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPLDVYWLK 272
K S L V+ + P + + K A + +W
Sbjct: 220 FKESLTLNVQYE---------PEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTT 269
Score = 49.7 bits (118), Expect = 3e-07
Identities = 11/96 (11%), Positives = 28/96 (29%), Gaps = 6/96 (6%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSPDFQIHTFSTKSI 190
+P V + ++ + + D +P T W + + +++
Sbjct: 231 EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG-----VEAQNRTL 285
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
+ +G + A N G + + E
Sbjct: 286 FFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEA 321
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 51.8 bits (123), Expect = 8e-08
Identities = 20/136 (14%), Positives = 37/136 (27%), Gaps = 7/136 (5%)
Query: 142 PCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST-----KSILIMRQV 196
C FE +F T+ W+ K +L R
Sbjct: 28 KCPLFE-HFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPT 86
Query: 197 FMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARF 256
+ D+G + + N +K + L V +K + P I + +
Sbjct: 87 LLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI-TCPNV 145
Query: 257 DAKISATKPLDVYWLK 272
D ++ + W
Sbjct: 146 DGYFPSSVKPTITWYM 161
Score = 50.3 bits (119), Expect = 2e-07
Identities = 17/130 (13%), Positives = 30/130 (23%), Gaps = 18/130 (13%)
Query: 153 FEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSG----VFAVIA 208
+ F PTI W+ + I + + L + ++G V
Sbjct: 145 VDGYFPSSVKPTITWYMGCYKIQNFN----NVIPEGMNLSFLIALISNNGNYTCVVTYPE 200
Query: 209 ENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLD- 267
R + + V VPP + V +
Sbjct: 201 NGRTFHLTRTLTVKVVGS----PKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLM 256
Query: 268 -----VYWLK 272
V+W
Sbjct: 257 DSRNEVWWTI 266
Score = 46.4 bits (109), Expect = 4e-06
Identities = 19/149 (12%), Positives = 39/149 (26%), Gaps = 28/149 (18%)
Query: 105 ELDDDGYY-----------AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARF 153
+ ++G Y + + + K A PPV ++
Sbjct: 185 LISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEEL 244
Query: 154 EVE------FDGDPLPTIKWFREDFPITSSPDFQIHTFSTK----------SILIMRQVF 197
+ F D + W + S IL +++V
Sbjct: 245 LIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVT 304
Query: 198 MEDSGV-FAVIAENRGGKAKCSANLVVEE 225
ED + A + G+ +A + +
Sbjct: 305 SEDLKRSYVCHARSAKGEVAKAAKVKQKV 333
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 50.0 bits (119), Expect = 1e-07
Identities = 14/122 (11%), Positives = 33/122 (27%), Gaps = 23/122 (18%)
Query: 105 ELDDDGYY---AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDP 161
+++D Y +++ L A + +E
Sbjct: 76 KIEDSDTYICEVEDQKEEVQLLVF--GLTANSDT--------HLLQGQSLTLTLESPPGS 125
Query: 162 LPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL 221
P+++ L + Q+ ++DSG + K + ++
Sbjct: 126 SPSVQCRSPRGKN----------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 175
Query: 222 VV 223
VV
Sbjct: 176 VV 177
Score = 29.9 bits (67), Expect = 0.64
Identities = 17/141 (12%), Positives = 28/141 (19%), Gaps = 35/141 (24%)
Query: 149 DQARFEVEFDGDPLPTIKWFRED----------FPITSSPDFQIHTFSTKSI-------L 191
D W + F S +S+ L
Sbjct: 11 DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 70
Query: 192 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
I++ + +EDS + C EE + G + G
Sbjct: 71 IIKNLKIEDSDTY-----------ICEVEDQKEEVQLLVFGLTANS-------DTHLLQG 112
Query: 252 QLARFDAKISATKPLDVYWLK 272
Q + V
Sbjct: 113 QSLTLTLESPPGSSPSVQCRS 133
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 49.8 bits (118), Expect = 2e-07
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 16/117 (13%)
Query: 159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 218
G P W + I S + ++ T S L M V + + A K +
Sbjct: 27 GCESPFFSWRTQ---IDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKG 83
Query: 219 ANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKP---LDVYWLK 272
+ + P S + G+ ++ P L++ LK
Sbjct: 84 IQVEIYS----------FPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLK 130
Score = 30.1 bits (67), Expect = 0.64
Identities = 13/90 (14%), Positives = 23/90 (25%), Gaps = 7/90 (7%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGD---PLPTIKWFREDFPITSSP---DFQIHTF 185
P + + I + D + S D +
Sbjct: 90 SFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSL 149
Query: 186 STKSILIMRQVFMEDSG-VFAVIAENRGGK 214
TKS+ + +ED G V A+ +
Sbjct: 150 ETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 50.6 bits (120), Expect = 2e-07
Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 15/95 (15%)
Query: 133 PPVFTKKIQP--CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
P ++ P E Q + G+PLP +K ++ +
Sbjct: 368 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE----------- 416
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
V + G + A + G+ + V
Sbjct: 417 --SVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449
Score = 47.6 bits (112), Expect = 2e-06
Identities = 21/219 (9%), Positives = 53/219 (24%), Gaps = 31/219 (14%)
Query: 73 KGDKEIVRKITATETTEMEHKGKIQERVVDASELDDDGYY------AITERKYYALSDLS 126
+G+KE+ R+ E E+ V + + + + S
Sbjct: 125 RGEKELKREPAVGEPAEVTTT-------VLVRRDHHGANFSCRTELDLRPQGLELFENTS 177
Query: 127 EQKP----AKPPVFTKKIQPCRAFEQDQARFEVEFDGD---PLPTIKWFREDFPITSSPD 179
P + + P Q DG + D + +
Sbjct: 178 APYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVT 237
Query: 180 FQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSF 239
+ +FS K+ + + E + + + + P+
Sbjct: 238 YGNDSFSAKASVSVT-AEDEGTQRLTCAVILGNQSQETLQTVTIY----------SFPAP 286
Query: 240 LTTISSAVINVGQLARFDAKISATKPLDVYWLKVSSLSD 278
++ ++ G + + + + L
Sbjct: 287 NVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGP 325
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 50.1 bits (119), Expect = 2e-07
Identities = 19/142 (13%), Positives = 36/142 (25%), Gaps = 14/142 (9%)
Query: 99 RVVDASELDDDGYY------AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQAR 152
+ + T + + PV + + D
Sbjct: 148 TIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFT 207
Query: 153 FEVEFDGDPLP-TIKWFREDFPITSSPDFQIHTFST-------KSILIMRQVFMEDSGVF 204
W + + + +++ + L + ++DSGVF
Sbjct: 208 VVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVF 267
Query: 205 AVIAENRGGKAKCSANLVVEEK 226
A N G A + L V EK
Sbjct: 268 MCYANNTFGSANVTTTLKVVEK 289
Score = 49.7 bits (118), Expect = 3e-07
Identities = 20/142 (14%), Positives = 29/142 (20%), Gaps = 9/142 (6%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 192
P P E A + D + D I I
Sbjct: 91 PAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECD-GKSLPTDLTFVPNPKAGITI 149
Query: 193 MRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
A+ G L V E + P +S ++ G
Sbjct: 150 KNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKA------IPVVSVPETSHLLKKG 203
Query: 252 QLARFDAKISAT-KPLDVYWLK 272
I ++ WLK
Sbjct: 204 DTFTVVCTIKDVSTSVNSMWLK 225
Score = 32.8 bits (74), Expect = 0.087
Identities = 12/145 (8%), Positives = 28/145 (19%), Gaps = 24/145 (16%)
Query: 131 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
PP D ++W + + + K+
Sbjct: 10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVEN-------KKNE 58
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250
I + +G + N S + V + P
Sbjct: 59 WIQEKAEATRTGTYTCSNSNGLTS---SIYVFVRD----------PAKLFLVGLPLFGKE 105
Query: 251 GQLARFDAKISATKPLDVYWLKVSS 275
A ++ + ++
Sbjct: 106 DSDALVRCPLTDPQVSQYSLIECDG 130
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 49.9 bits (118), Expect = 2e-07
Identities = 9/115 (7%), Positives = 25/115 (21%), Gaps = 21/115 (18%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI- 190
V + + E + + W+ + + K+
Sbjct: 135 SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQF 194
Query: 191 --------------------LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
L++R + D+G G+ + + +
Sbjct: 195 GITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249
Score = 43.0 bits (100), Expect = 4e-05
Identities = 19/154 (12%), Positives = 33/154 (21%), Gaps = 40/154 (25%)
Query: 159 GDPLPTIKWFREDFPITSSPDFQIH-----------------------------TFSTKS 189
P I W + P S+ F+ +
Sbjct: 31 DTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAP 90
Query: 190 ILIMRQVFMEDSG-----VFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTIS 244
L + V +D G V G S L V ++T
Sbjct: 91 TLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTG------HTPSNNVHVSTAE 144
Query: 245 SAVINVGQLARFDAKISATKPLDVYWLKVSSLSD 278
++ G + +V W + +
Sbjct: 145 VVQVDEGNDITMTCPCTDCANANVTWYTGPTFFE 178
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 47.4 bits (112), Expect = 3e-07
Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 11/101 (10%)
Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLP--TIKWFREDFPITSSPDFQIHTFSTK--- 188
P T + + A F T W ++ + + +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 189 -----SILIMRQVFMEDSGVFAVIAENRGGKAKCS-ANLVV 223
+IL +R V G + + N G + A L +
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 49.2 bits (117), Expect = 3e-07
Identities = 21/141 (14%), Positives = 36/141 (25%), Gaps = 20/141 (14%)
Query: 106 LDDDGYY---AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPL 162
L D G Y Y + P + + + +G P
Sbjct: 89 LQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVV---DPVTSEHELTCQAEGYPK 145
Query: 163 PTIKWFREDFPITSSPDFQIH------TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK 216
+ W D + S + F+ S L + + +F +
Sbjct: 146 AEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINT---TTNEIFYCTFRRLDPEEN 202
Query: 217 CSANLVVEEKRQGGRGGVVPP 237
+A LV+ E PP
Sbjct: 203 HTAELVIPELPL-----AHPP 218
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 49.4 bits (117), Expect = 4e-07
Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 11/90 (12%)
Query: 135 VFTKKIQP-CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIM 193
VF + +E P+++ L +
Sbjct: 97 VFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN----------IQGGKTLSV 146
Query: 194 RQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
Q+ ++DSG + K + ++VV
Sbjct: 147 SQLELQDSGTWTCTVLQNQKKVEFKIDIVV 176
Score = 32.1 bits (72), Expect = 0.20
Identities = 15/145 (10%), Positives = 30/145 (20%), Gaps = 35/145 (24%)
Query: 145 AFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI-------------- 190
+ D W + T +
Sbjct: 6 GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 65
Query: 191 ---LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAV 247
LI++ + +EDS + E++ + + + LT S
Sbjct: 66 NFPLIIKNLKIEDSDTYICEVEDQKEEVQ------------------LLVFGLTANSDTH 107
Query: 248 INVGQLARFDAKISATKPLDVYWLK 272
+ GQ + V
Sbjct: 108 LLQGQSLTLTLESPPGSSPSVQCRS 132
Score = 29.8 bits (66), Expect = 1.1
Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 6/94 (6%)
Query: 136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMR- 194
F + + ++ E I + ++ ++ Q L +
Sbjct: 198 FPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHL 257
Query: 195 -----QVFMEDSGVFAVIAENRGGKAKCSANLVV 223
SG + E + GK NLVV
Sbjct: 258 TLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVV 291
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 49.5 bits (118), Expect = 5e-07
Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 1/85 (1%)
Query: 139 KIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFM 198
K A D + + + + + S + L ++V +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRN-GDLFFKKVQV 310
Query: 199 EDSGVFAVIAENRGGKAKCSANLVV 223
ED GV+ A S L V
Sbjct: 311 EDGGVYTCYAMGETFNETLSVELKV 335
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 48.4 bits (114), Expect = 5e-07
Identities = 12/99 (12%), Positives = 21/99 (21%), Gaps = 9/99 (9%)
Query: 127 EQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDG---------DPLPTIKWFREDFPITSS 177
+ Q ++V G P I W D I
Sbjct: 96 DDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGD 155
Query: 178 PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK 216
D + + + +E SG + +
Sbjct: 156 EDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDA 194
Score = 36.4 bits (83), Expect = 0.005
Identities = 7/59 (11%), Positives = 13/59 (22%), Gaps = 7/59 (11%)
Query: 159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC 217
I WF++ I K + + G++ K
Sbjct: 26 DAEAKNITWFKDGKMIGFLT-------EDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQ 77
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 48.8 bits (116), Expect = 5e-07
Identities = 12/126 (9%), Positives = 32/126 (25%), Gaps = 17/126 (13%)
Query: 132 KPPVFTKKIQPCRAFEQDQARFEVEFDGD-PLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
++ E + D + + ++R S
Sbjct: 81 HRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF--------HWNSN 132
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 250
L + + + +G + + ++ V+E + P L ++ +
Sbjct: 133 LTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKE--------LFPAPVLNASVTSPLLE 184
Query: 251 GQLARF 256
G L
Sbjct: 185 GNLVTL 190
Score = 31.8 bits (72), Expect = 0.19
Identities = 16/97 (16%), Positives = 26/97 (26%), Gaps = 5/97 (5%)
Query: 128 QKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST 187
++ PV + E + E F + +T
Sbjct: 166 KELFPAPVLNASVTS-PLLEGNLVTLSCETKLLLQRPGLQLYFSF---YMGSKTLRGRNT 221
Query: 188 KSILIMRQVFMEDSGVFAVIAENRGGKA-KCSANLVV 223
S + EDSG++ A G K S L +
Sbjct: 222 SSEYQILTARREDSGLYWCEAATEDGNVLKRSPELEL 258
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 46.5 bits (110), Expect = 6e-07
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 16/106 (15%)
Query: 132 KPPV-FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS----------PDF 180
++ + ++ + A F ++ WF + S+ +
Sbjct: 6 SGTARLVAGLEDVQVYDGEDAVFSLDLSTI--IQGTWFLNGEELKSNEPEGQVEPGALRY 63
Query: 181 QIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 226
+I + LI+ V +DSG + + SA L ++E
Sbjct: 64 RIEQKGLQHRLILHAVKHQDSGALVGFS---CPGVQDSAALTIQES 106
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 47.7 bits (113), Expect = 6e-07
Identities = 24/128 (18%), Positives = 38/128 (29%), Gaps = 16/128 (12%)
Query: 107 DDDGYY---AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLP 163
D G Y + E A L PP E + A + + P
Sbjct: 59 DQWGEYSCVFLPEPMGTANIQLHG-----PPRVKAVKSSEHINEGETAMLVCKSESVPPV 113
Query: 164 T-IKWFREDFPI------TSSPDFQIHTFSTKSILIMRQVFME-DSGVFAVIAENRGGKA 215
T W++ S F + + +S L + + ME D G + + G
Sbjct: 114 TDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSD 173
Query: 216 KCSANLVV 223
+ L V
Sbjct: 174 QAIITLRV 181
Score = 44.6 bits (105), Expect = 8e-06
Identities = 17/135 (12%), Positives = 34/135 (25%), Gaps = 23/135 (17%)
Query: 149 DQARFEVEFDGDPLPTI--KWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAV 206
+ + +W + + + + G ++
Sbjct: 14 SKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-------PGQKTEFKVDSDDQWGEYSC 66
Query: 207 IAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KP 265
+ +AN+ + PP SS IN G+ A K +
Sbjct: 67 VFLPEPMG---TANIQLH----------GPPRVKAVKSSEHINEGETAMLVCKSESVPPV 113
Query: 266 LDVYWLKVSSLSDVK 280
D W K++ D
Sbjct: 114 TDWAWYKITDSEDKA 128
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 48.2 bits (114), Expect = 1e-06
Identities = 13/127 (10%), Positives = 35/127 (27%), Gaps = 9/127 (7%)
Query: 106 LDDDGYY----AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDP 161
+ +D Y I +R+ + + + + + + G+
Sbjct: 150 IFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNE 209
Query: 162 LPTIKWFRED-----FPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK 216
+ +W + + +SIL + +EDSG + +
Sbjct: 210 VVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQ 269
Query: 217 CSANLVV 223
+ +
Sbjct: 270 DEKAINI 276
Score = 42.8 bits (100), Expect = 6e-05
Identities = 8/113 (7%), Positives = 25/113 (22%), Gaps = 16/113 (14%)
Query: 160 DPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSA 219
DP + + + + + + + + + A
Sbjct: 121 DPQLVVTLHEKKGDVALP----VPYDHQRGFSGI-----FEDRSYICKTTIGDREVDSDA 171
Query: 220 NLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
V + V + V+ G+ + + ++ W
Sbjct: 172 YYVYRLQ-------VSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTY 217
Score = 29.3 bits (65), Expect = 1.5
Identities = 7/60 (11%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 163 PTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV 222
+ W R + + S+L + + D+G + + G +
Sbjct: 26 APVVWERMSQEP-PQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRL 84
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 48.1 bits (113), Expect = 2e-06
Identities = 27/195 (13%), Positives = 55/195 (28%), Gaps = 19/195 (9%)
Query: 106 LDDDGYYA-ITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT 164
DD G Y LS + ++ P + F +
Sbjct: 84 QDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQK 143
Query: 165 IKWFREDFPITSSPDFQI-----------------HTFSTKSILIMRQVFMEDSGVFAVI 207
K + + T +++ Q+ + D+G +
Sbjct: 144 RKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQ 203
Query: 208 AENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLD 267
A + K +A+L V + + S +T + V +A+F + S+ + D
Sbjct: 204 AGDDSNSNKKNADLQVLKPEPELVYEDLRGS-VTFHCALGPEVANVAKFLCRQSSGENCD 262
Query: 268 VYWLKVSSLSDVKRG 282
V + + G
Sbjct: 263 VVVNTLGKRAPAFEG 277
Score = 45.4 bits (106), Expect = 1e-05
Identities = 23/158 (14%), Positives = 40/158 (25%), Gaps = 12/158 (7%)
Query: 106 LDDDGYYA-ITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQD---QARFEVEFDGDP 161
D G+Y +T + + + P + F +F
Sbjct: 415 SRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYE 474
Query: 162 LPTIKWFREDFPITSSPD-------FQIHTFSTKSILIMRQVFMEDSGVFA-VIAENRGG 213
KW S D S L + V D G + + +
Sbjct: 475 KYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFY 534
Query: 214 KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG 251
+ + VEE++ G V V++ G
Sbjct: 535 GETAAVYVAVEERKAAGSRDVSLAKADAAPDEKVLDSG 572
Score = 38.8 bits (89), Expect = 0.002
Identities = 26/198 (13%), Positives = 57/198 (28%), Gaps = 32/198 (16%)
Query: 72 KKGDKEIVRKITATETTEMEHKGKIQERVVDASEL-----------DDDGYY-------A 113
K+ V I ++ + G+I+ + +L D G Y +
Sbjct: 149 KQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDS 208
Query: 114 ITERKYYALSDLSEQKPAKPPVFTKKIQ-PCRAFEQ--DQARFEVEFDGDPLPTIKWFRE 170
+ +K L L + + C + + A+F +
Sbjct: 209 NSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTL 268
Query: 171 DFP-------ITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
I +P + +FS +++ + ED+G + A + G + S
Sbjct: 269 GKRAPAFEGRILLNPQDKDGSFS----VVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAW 324
Query: 224 EEKRQGGRGGVVPPSFLT 241
+ P+ +
Sbjct: 325 QLFVNEESTIPRSPTVVK 342
Score = 29.6 bits (65), Expect = 1.3
Identities = 13/138 (9%), Positives = 34/138 (24%), Gaps = 24/138 (17%)
Query: 106 LDDDGYY---AITERKYYALSDLSEQKPAKPPVFTKKIQPC--RAFEQDQARFEVEFDGD 160
+D G Y A ++ + S + + T P + ++
Sbjct: 299 KEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRK 358
Query: 161 PLPTIKWFREDFPITSSPDFQI-------------------HTFSTKSILIMRQVFMEDS 201
+IK++ + + + +I+ Q+ D+
Sbjct: 359 ESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDA 418
Query: 202 GVFAVIAENRGGKAKCSA 219
G + +
Sbjct: 419 GFYWCLTNGDTLWRTTVE 436
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 47.4 bits (112), Expect = 2e-06
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 15/94 (15%)
Query: 133 PPVFTKKIQP--CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 190
P ++ P E Q + G+PLP +K ++ +
Sbjct: 183 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE----------- 231
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 224
V + G + A + G+ + V
Sbjct: 232 --SVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 44.3 bits (104), Expect = 4e-06
Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 6/87 (6%)
Query: 142 PCRAFEQDQARFEV--EFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFME 199
C A + + E+ K D S + + S L + V
Sbjct: 29 NCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFL----STLTIDGVTRS 84
Query: 200 DSGVFAVIAENRGGKAKCSANLVVEEK 226
D G++ A + K S + V EK
Sbjct: 85 DQGLYTCAASSGLMTKKNSTFVRVHEK 111
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 45.4 bits (107), Expect = 4e-06
Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 12/128 (9%)
Query: 106 LDDDGYY---AITERKY-YALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDP 161
+ D G Y I + Y + + + + + + G P
Sbjct: 76 VRDSGQYRCLVICGAAWDYKYLTVKVKASYMRI----DTRILEVPGTGEVQLTCQARGYP 131
Query: 162 LPTIKWFREDFPITSSPDFQIH-TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN 220
L + W P +S + S+L ++ + S F+ + N K SA
Sbjct: 132 LAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKP---QPSRNFSCMFWNAHMKELTSAI 188
Query: 221 LVVEEKRQ 228
+ + +
Sbjct: 189 IDPLSRME 196
Score = 30.0 bits (67), Expect = 0.71
Identities = 9/79 (11%), Positives = 20/79 (25%), Gaps = 9/79 (11%)
Query: 157 FDGDPLPTIKWFREDFPITSSPDFQIH---TFSTKSI------LIMRQVFMEDSGVFAVI 207
FD ++ R + T + + + V + DSG + +
Sbjct: 26 FDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCL 85
Query: 208 AENRGGKAKCSANLVVEEK 226
+ V+
Sbjct: 86 VICGAAWDYKYLTVKVKAS 104
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 45.2 bits (106), Expect = 7e-06
Identities = 14/117 (11%), Positives = 24/117 (20%), Gaps = 10/117 (8%)
Query: 125 LSEQKPAKPPVFTKKIQPCRAFEQDQARFE--VEFDGDPLPTIKWFREDFPITS------ 176
+ V ++ + + W
Sbjct: 97 VVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNR 156
Query: 177 --SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGR 231
S L + V D G++ A + K S + V E GR
Sbjct: 157 DLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIEGR 213
Score = 40.5 bits (94), Expect = 2e-04
Identities = 10/111 (9%), Positives = 31/111 (27%), Gaps = 6/111 (5%)
Query: 160 DPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSA 219
+ PD ++ +K + + +G+ A+ +
Sbjct: 35 ISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIM 94
Query: 220 NLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYW 270
+VV + + L+ ++VG+ + + + +
Sbjct: 95 YIVVVVGYR------IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF 139
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 45.0 bits (106), Expect = 7e-06
Identities = 18/139 (12%), Positives = 35/139 (25%), Gaps = 17/139 (12%)
Query: 106 LDDDGYY---AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPL 162
+ D G Y E + + ++ E D +
Sbjct: 80 MKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIG- 138
Query: 163 PTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC-SANL 221
I+W + + + SIL + + ED+G + N + S L
Sbjct: 139 ANIQWLFNSQSLQLTERMTLS--QNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKL 196
Query: 222 VVEEKRQGGRGGVVPPSFL 240
+ + P
Sbjct: 197 DI----------IFDPHHH 205
Score = 44.7 bits (105), Expect = 9e-06
Identities = 19/154 (12%), Positives = 47/154 (30%), Gaps = 27/154 (17%)
Query: 136 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED----------FPITSSPDFQIHTF 185
T + P + E + V L W++ + F S+ +F +
Sbjct: 2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAY 61
Query: 186 STKSI------LIMRQVFMEDSGVFAVIAENRGGK-AKCSANLVVEEKRQGGRGGVVPPS 238
S + I L+ + + M+D GV+ + + + + + V +
Sbjct: 62 SGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQP---------VTQ 112
Query: 239 FLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
+++ + + ++ WL
Sbjct: 113 PFLQVTNTTVKELDSVTLTCLSNDIGA-NIQWLF 145
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 45.5 bits (108), Expect = 1e-05
Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 13/110 (11%)
Query: 133 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FPITSSPDFQIHTFSTKSI 190
PV + E A + L ++ W + + +I S
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSD-GT 398
Query: 191 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFL 240
L V ++D+G++ + N G SA L V
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG---------THHHHH 439
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 44.4 bits (105), Expect = 2e-05
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 6/106 (5%)
Query: 121 ALSDLSEQKPA-KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FPITSS 177
L ++ + P + E A + P+ ++KW + +S
Sbjct: 339 YLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHAS 396
Query: 178 PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
+I + ++ V + D+GV+ + N G + SA L V
Sbjct: 397 RHPRISVLNDGTLNF-SHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 41.4 bits (97), Expect = 9e-05
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 11/69 (15%)
Query: 158 DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC 217
P + +++ + S H ++T S F A N+ K
Sbjct: 125 MNGTDPELNLYQDGKHLKLSQRVITHKWTT-----------SLSAKFKCTAGNKVSKESS 173
Query: 218 SANLVVEEK 226
+ EK
Sbjct: 174 VEPVSCPEK 182
Score = 37.2 bits (86), Expect = 0.003
Identities = 10/76 (13%), Positives = 22/76 (28%), Gaps = 11/76 (14%)
Query: 159 GDPLPTIKWFREDFPITS----------SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA 208
D + IKW + F ++ I + + +D ++ V
Sbjct: 27 SDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKI-KHLKTDDQDIYKVSI 85
Query: 209 ENRGGKAKCSANLVVE 224
+ GK ++
Sbjct: 86 YDTKGKNVLEKIFDLK 101
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 38.2 bits (88), Expect = 4e-04
Identities = 12/83 (14%), Positives = 20/83 (24%), Gaps = 9/83 (10%)
Query: 143 CRAFEQDQARFEVEFDG---------DPLPTIKWFREDFPITSSPDFQIHTFSTKSILIM 193
Q ++V G P I W D I D + + +
Sbjct: 5 EEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLK 64
Query: 194 RQVFMEDSGVFAVIAENRGGKAK 216
+E SG + +
Sbjct: 65 EFSELEQSGYYVCYPRGSKPEDA 87
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 5e-04
Identities = 27/220 (12%), Positives = 59/220 (26%), Gaps = 66/220 (30%)
Query: 85 TETTEMEHK-GKIQERVVDASELDDDGYYAITERKYYALSDLSEQKPAKPPVFTKK---- 139
ET E +++ I DA + D + D+ + + +K+
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKD---------VQDMPK------SILSKEEIDH 53
Query: 140 --IQPCRA---------FEQDQARFEVEFDGDPL-PTIKWFREDFPI-TSSPDFQIHTFS 186
+ Q +F + L K+ P +
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 187 TKSILIMRQVFMEDSGVFAVIAENRGGK----------AKCSANLVVEEKRQGGRG-GVV 235
+ R D+ VFA +R + + N+++ G G G
Sbjct: 114 EQ-----RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI----DGVLGSG-- 162
Query: 236 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKVSS 275
+++ + K+ ++WL + +
Sbjct: 163 -KTWV---------ALDVCL-SYKVQCKMDFKIFWLNLKN 191
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 40.1 bits (93), Expect = 5e-04
Identities = 21/147 (14%), Positives = 46/147 (31%), Gaps = 14/147 (9%)
Query: 107 DDDGYYAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIK 166
GY AI E K P +IQ A F+ G + +
Sbjct: 145 GHQGYLAIDEVKVL-------GHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDR 197
Query: 167 WFREDFPITSSPDFQIHTFSTK---SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 223
+ + + +P +I S++ + + D+G + + GG + +V
Sbjct: 198 LWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELV 257
Query: 224 EEKRQGGRGGVVPPSFLTTISSAVINV 250
++ L ++ + + +
Sbjct: 258 VKEPPVPIAPPQ----LASVGATYLWI 280
Score = 29.4 bits (65), Expect = 1.6
Identities = 18/119 (15%), Positives = 28/119 (23%), Gaps = 17/119 (14%)
Query: 155 VEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGV-FAVIAENRGG 213
V+ + PL W P + ++ L + + V F VI G
Sbjct: 98 VKVNNGPLGNPIWNISGDPTRT---------WNRAELAISTFWPNFYQVIFEVITSGHQG 148
Query: 214 KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 272
V+ I + +N GQ A F
Sbjct: 149 YLAIDEVKVLGHPCT-------RTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWL 200
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 6e-04
Identities = 35/248 (14%), Positives = 74/248 (29%), Gaps = 87/248 (35%)
Query: 56 HGKEIHTAKSQQVQKEKKGDKEIVRKITATETTEMEHKGKIQERVVDASELDDDGYYAIT 115
G +IH + K+ T + ++ I
Sbjct: 97 EGNDIHA---------------LAAKLLQENDTTLVKTKEL-----------------I- 123
Query: 116 ERKYY---ALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEF--DGDPLPTIKWFRE 170
+ Y ++ K + +F RA + A+ F G+ T +F E
Sbjct: 124 -KNYITARIMAKRPFDKKSNSALF-------RAVGEGNAQLVAIFGGQGN---TDDYFEE 172
Query: 171 DFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGG 230
+ + T +L+ ++ S ++E ++ ++
Sbjct: 173 ---------LR-DLYQTYHVLV--GDLIKFSA--ETLSE--------LIRTTLDAEKVFT 210
Query: 231 RG----------GVVPP-SFLTT--ISSAVINVGQLARF--DAKISATKPLDVYWLKVSS 275
+G P +L + IS +I V QLA + AK+ P ++ +
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR-SYLKG 269
Query: 276 LSDVKRGV 283
+ +G+
Sbjct: 270 ATGHSQGL 277
Score = 35.8 bits (82), Expect = 0.018
Identities = 32/153 (20%), Positives = 51/153 (33%), Gaps = 38/153 (24%)
Query: 117 RKYYALSDL-------SEQKPAK-----P---PVFTKKIQPCRA-FEQDQARFEVEFDGD 160
RK A S L SE+K P P + + P +D + V F+
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 161 PLPTIKWFREDFPI--TSS-PDFQIHTFS-TKSI--LIMRQ-VFMEDSGVFA---VIAEN 210
+ P+ T D ++ + S ++ I I+R V E + F ++
Sbjct: 454 DI--------QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505
Query: 211 RGGKAKCSANLVVEEKRQGGRG-GVVPPSFLTT 242
GG + L K G G V+ L
Sbjct: 506 PGGASGLG-VLTHRNKD--GTGVRVIVAGTLDI 535
Score = 28.5 bits (63), Expect = 3.4
Identities = 32/167 (19%), Positives = 50/167 (29%), Gaps = 73/167 (43%)
Query: 2 LEAAKKEPELQPWQKKNILKSRTASSDRSGVSTEETKI-IDGR--KVSVP------EPSA 52
L AK L Q SR S+R K+ R V+ P P++
Sbjct: 393 LRKAKAPSGLD--Q------SRIPFSER--------KLKFSNRFLPVASPFHSHLLVPAS 436
Query: 53 SGV-----------HGKEI-----HTAKSQQVQKEKKG-DKEIVRKITA-----TETTEM 90
+ + K+I T ++ + IV I TT+
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF 496
Query: 91 E--H---------KG------KIQE----RVVDASELD----DD-GY 111
+ H G + ++ RV+ A LD DD G+
Sbjct: 497 KATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGF 543
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 38.4 bits (89), Expect = 0.001
Identities = 14/122 (11%), Positives = 35/122 (28%), Gaps = 22/122 (18%)
Query: 159 GDPLPTIKWFREDFPITS--------SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 210
D + ++W R + + + I + + +DSG + V +
Sbjct: 24 TDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKI-KNLTRDDSGTYNVTVYS 82
Query: 211 RGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYW 270
G + L + V P S+A + ++ +++
Sbjct: 83 TNGTRILNKALDLRILEM-----VSKPMIYWECSNATLTC--------EVLEGTDVELKL 129
Query: 271 LK 272
+
Sbjct: 130 YQ 131
Score = 29.2 bits (65), Expect = 0.96
Identities = 17/123 (13%), Positives = 29/123 (23%), Gaps = 17/123 (13%)
Query: 105 ELDDDGYY--AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPL 162
DD G Y + + + + V I +E A E
Sbjct: 69 TRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIY----WECSNATLTCEVLEGTD 124
Query: 163 PTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV 222
+K ++ + S M + F A NR + +
Sbjct: 125 VELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN 173
Query: 223 VEE 225
E
Sbjct: 174 CPE 176
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 38.3 bits (88), Expect = 0.002
Identities = 17/128 (13%), Positives = 40/128 (31%), Gaps = 10/128 (7%)
Query: 126 SEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF 185
S ++ V E+ ++ ++ FR +T D +
Sbjct: 144 STEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTG--DISRNDG 201
Query: 186 STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLT-TIS 244
S + ++ V D G++ +++ + L V + + P+ T
Sbjct: 202 S----IKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRT---ISPTPPTDKGQ 254
Query: 245 SAVINVGQ 252
++N Q
Sbjct: 255 QGILNGNQ 262
Score = 29.1 bits (64), Expect = 1.7
Identities = 6/86 (6%), Positives = 20/86 (23%), Gaps = 20/86 (23%)
Query: 158 DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI--------------------LIMRQVF 197
+ + + W +S + + L+++ V
Sbjct: 33 EEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQ 92
Query: 198 MEDSGVFAVIAENRGGKAKCSANLVV 223
D G++ + + +
Sbjct: 93 KADEGIYTCEIRLKNESMVMKKPVEL 118
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 35.4 bits (81), Expect = 0.007
Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 4/117 (3%)
Query: 112 YAITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFEVEFDG-DPLPTIKWFRE 170
+ E + L LS++ P V TK E+ Q RF ++ + + +
Sbjct: 17 GSHMEEEMKRLLALSQEHKF-PTVPTKSELAVEILEKGQVRFWMQAEKLSSNAKVSYIFN 75
Query: 171 DFPITSSPDFQIHTFSTKSI--LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 225
+ I P +++H I + M ++ ED G + ++ + L+ +
Sbjct: 76 EKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQDGKATGHSTLVLIGDV 132
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 33.6 bits (76), Expect = 0.044
Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 25/143 (17%)
Query: 105 ELDDDGYY--------AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFE-V 155
++ D+ Y A T L+ KP V K + Q
Sbjct: 85 QVGDERDYVCVVRAGAAGTAEATARLNVF--AKPEATEVSPNKGTLSVMEDSAQEIATCN 142
Query: 156 EFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA------- 208
+G+P P I W+R + + + T + E SG+ ++ +
Sbjct: 143 SRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTV------REASGLLSLTSTLYLRLR 196
Query: 209 -ENRGGKAKCSANLVVEEKRQGG 230
++R C+A+ + E R G
Sbjct: 197 KDDRDASFHCAAHYSLPEGRHGR 219
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 33.7 bits (76), Expect = 0.049
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 158 DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC 217
+ + T+ W S L++R V + DSG ++ G+
Sbjct: 32 EPEDNATVHWVLRKPAAGSH---PSRWAGMGRRLLLRSVQLHDSGNYSCYR---AGRPAG 85
Query: 218 SANLVVEE 225
+ +L+V+
Sbjct: 86 TVHLLVDV 93
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 32.9 bits (75), Expect = 0.057
Identities = 6/68 (8%), Positives = 19/68 (27%), Gaps = 9/68 (13%)
Query: 159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR-GGKAKC 217
L + + + S + + ++DSG + +
Sbjct: 115 NTALHKVTYLQNGKDRKYF--------HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSE 166
Query: 218 SANLVVEE 225
+ N+ + +
Sbjct: 167 TVNITITQ 174
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 32.7 bits (74), Expect = 0.078
Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 6/126 (4%)
Query: 105 ELDDDGYY--AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFE-VEFDGDP 161
++D+G Y + S + P T ++Q + + V G P
Sbjct: 86 RVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRP 145
Query: 162 LPTIKWFREDFPITSSPDFQIH---TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 218
I W + + + T + S+ I+ D E+ +
Sbjct: 146 PAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQL 205
Query: 219 ANLVVE 224
+ +
Sbjct: 206 LTVSLT 211
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 32.5 bits (73), Expect = 0.088
Identities = 12/96 (12%), Positives = 25/96 (26%), Gaps = 17/96 (17%)
Query: 147 EQDQARFEVEFDG---------DPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVF 197
+ + ++V G D +KW + + D K +++
Sbjct: 2 DAENIEYKVSISGTSVELTCPLDSDENLKWEKNGQELPQKHD--------KHLVLQDFSE 53
Query: 198 MEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGG 233
+EDSG + V +
Sbjct: 54 VEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDA 89
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 32.2 bits (73), Expect = 0.098
Identities = 6/68 (8%), Positives = 21/68 (30%), Gaps = 9/68 (13%)
Query: 159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK-C 217
+ + ++++ + + + +EDSG + + +
Sbjct: 112 NWDVYKVIYYKDGEALKYW--------YENHNISITNATVEDSGTYYCTGKVWQLDYESE 163
Query: 218 SANLVVEE 225
N+ V +
Sbjct: 164 PLNITVIK 171
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 32.1 bits (73), Expect = 0.12
Identities = 7/56 (12%), Positives = 12/56 (21%), Gaps = 8/56 (14%)
Query: 159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGK 214
PL + +F+ S + Q SG +
Sbjct: 112 DKPLVKVTFFQNGKSQKFS--------HLDPTFSIPQANHSHSGDYHCTGNIGYTL 159
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 31.1 bits (70), Expect = 0.13
Identities = 12/114 (10%), Positives = 34/114 (29%), Gaps = 20/114 (17%)
Query: 134 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--------DFPITSSPDFQIHTF 185
T + E + +++W ++P+ + +Q+
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 186 STKSI-LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPS 238
S + + + V ++D GV+ + + K ++V +
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYSDSVSTK-EVKVIV----------LATMK 104
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 32.3 bits (73), Expect = 0.16
Identities = 6/69 (8%), Positives = 19/69 (27%), Gaps = 1/69 (1%)
Query: 155 VEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGK 214
+++ I W F I + I + S+ + ++ + +
Sbjct: 32 MDYFHVNANYIVWKTNHFTIPKE-QYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQ 90
Query: 215 AKCSANLVV 223
++
Sbjct: 91 NVYGITIIS 99
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 31.1 bits (70), Expect = 0.27
Identities = 18/126 (14%), Positives = 33/126 (26%), Gaps = 14/126 (11%)
Query: 106 LDDDGYY-----AITERKYYALSDLSEQKPAKPPVFTKKIQPCRAFEQDQARFE-VEFDG 159
D+G Y + + K T I + R G
Sbjct: 74 PSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGG 133
Query: 160 DPLPTIKWFREDFPITS-----SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGK 214
P P + W + + S D + ++ S L M + F + + +
Sbjct: 134 FPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLR 190
Query: 215 AKCSAN 220
+ N
Sbjct: 191 VNQTFN 196
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 31.0 bits (69), Expect = 0.29
Identities = 6/65 (9%), Positives = 14/65 (21%), Gaps = 6/65 (9%)
Query: 157 FDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK 216
+ P T W + S L + + + +G +
Sbjct: 151 CEAGPPLTFSWTGNALSPLDP------ETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVT 204
Query: 217 CSANL 221
+
Sbjct: 205 TERTV 209
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 29.9 bits (67), Expect = 0.61
Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 3/72 (4%)
Query: 157 FDGDPLPTIKWFREDFPITSSPDFQ--IHTFSTKSILIMRQVFMEDSGVFAVIAENRGGK 214
+++F F+ + T L + V ED G + + +
Sbjct: 35 LHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETED 94
Query: 215 AKCSANLVVEEK 226
+ V E
Sbjct: 95 QW-KITMEVYEM 105
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 29.5 bits (66), Expect = 0.87
Identities = 8/69 (11%), Positives = 22/69 (31%), Gaps = 10/69 (14%)
Query: 158 DGDPLPTIKWFREDFPI--------TSSPDFQ--IHTFSTKSILIMRQVFMEDSGVFAVI 207
PL + W ++ + + F+ ++ + L + + D + +
Sbjct: 19 SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEME 78
Query: 208 AENRGGKAK 216
+ N K
Sbjct: 79 SPNITDTMK 87
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 28.0 bits (62), Expect = 1.3
Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 30/104 (28%)
Query: 142 PCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI----------- 190
PC + + G +P + W + P + + + T
Sbjct: 15 PCS--------YTLPTSGTLVP-MCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKG 65
Query: 191 --------LIMRQVFMEDSGVFAVIAENRG--GKAKCSANLVVE 224
LI++ V ++D G + + G K L ++
Sbjct: 66 DLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDIK 109
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 28.3 bits (63), Expect = 2.6
Identities = 5/68 (7%), Positives = 18/68 (26%), Gaps = 9/68 (13%)
Query: 159 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR-GGKAKC 217
L + + + S + + ++DSG + +
Sbjct: 115 NTALHKVTYLQNGKGRKYF--------HHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSE 166
Query: 218 SANLVVEE 225
+ + + +
Sbjct: 167 TVQITITQ 174
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.130 0.366
Gapped
Lambda K H
0.267 0.0574 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,164,325
Number of extensions: 246564
Number of successful extensions: 1028
Number of sequences better than 10.0: 1
Number of HSP's gapped: 709
Number of HSP's successfully gapped: 351
Length of query: 283
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 191
Effective length of database: 4,133,061
Effective search space: 789414651
Effective search space used: 789414651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.1 bits)