BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14062
(388 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NTJ3|SMC4_HUMAN Structural maintenance of chromosomes protein 4 OS=Homo sapiens
GN=SMC4 PE=1 SV=2
Length = 1288
Score = 207 bits (527), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 134/352 (38%), Positives = 180/352 (51%), Gaps = 92/352 (26%)
Query: 72 GPRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTN 131
PRL+IT IV NFKSYAG LGPF
Sbjct: 79 APRLMITHIVNQNFKSYAGEKILGPF---------------------------------- 104
Query: 132 RYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANK 191
+KRF+ IIGPNGSGKSNVID SMLFVFGYRA KIR+ K
Sbjct: 105 -HKRFSCIIGPNGSGKSNVID----------------------SMLFVFGYRAQKIRSKK 141
Query: 192 LSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNG 251
LSVL+H SD+ + C+V +HF +IIDK ++YE+IP ++ ++RTA DN+S Y ++G
Sbjct: 142 LSVLIHNSDEHKDIQSCTVEVHFQKIIDKEGDDYEVIPNSNFYVSRTACRDNTSVYHISG 201
Query: 252 KKVHFKEVAKVLRDHGVDLLNNRFLILQ---EPIAKM----------------------- 285
KK FK+V +LR HG+DL +NRFLILQ E IA M
Sbjct: 202 KKKTFKDVGNLLRSHGIDLDHNRFLILQGEVEQIAMMKPKGQTEHDEGMLEYLEDIIGCG 261
Query: 286 ------EVLYGK---YDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNE 336
+VL + +E R EKL RV++VE + ALE E A+ FL LEN + RK N
Sbjct: 262 RLNEPIKVLCRRVEILNEHRGEKLNRVKMVEKEKDALEGEKNIAIEFLTLENEIFRKKNH 321
Query: 337 IYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
+ QY Y K + E ET+ +++ ++ E ++EM++ ++K E
Sbjct: 322 VCQYYIYELQKRIAEMETQKEKIHEDTKEINEKSNILSNEMKAKNKDVKDTE 373
>sp|P50532|SMC4_XENLA Structural maintenance of chromosomes protein 4 OS=Xenopus laevis
GN=smc4 PE=1 SV=1
Length = 1290
Score = 203 bits (517), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 160/304 (52%), Gaps = 92/304 (30%)
Query: 72 GPRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTN 131
PRL+IT IV NFKSYAG LGPF
Sbjct: 73 APRLMITHIVNQNFKSYAGERILGPF---------------------------------- 98
Query: 132 RYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANK 191
+KRF+ IIGPNGSGKSNVID SMLFVFGYRA KIR+ K
Sbjct: 99 -HKRFSCIIGPNGSGKSNVID----------------------SMLFVFGYRAQKIRSKK 135
Query: 192 LSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNG 251
LSVL+H SD+ V C+V +HF +IIDK +++E+IP ++ ++RTA+ DNSS Y ++G
Sbjct: 136 LSVLIHNSDEHKDVQSCTVEVHFQKIIDKEGDDFEVIPNSNFYVSRTAYKDNSSVYHISG 195
Query: 252 KKVHFKEVAKVLRDHGVDLLNNRFLILQ---EPIAKM----------------------- 285
KK FK+V +LR HG+DL +NRFLILQ E IA M
Sbjct: 196 KKATFKDVGLLLRSHGIDLDHNRFLILQGEVEQIAMMKPKGQTEHDEGMLEYLEDIIGSE 255
Query: 286 ------EVLYGKYD---EERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNE 336
++L + + E+R EKL RV++VE + ALE E KA+ FL +EN +K N+
Sbjct: 256 RLKEPIQILCRRVELLNEQRGEKLNRVKMVEKEKDALEGEKNKAIEFLTVENETFKKKNQ 315
Query: 337 IYQY 340
+ QY
Sbjct: 316 LCQY 319
>sp|Q8CG47|SMC4_MOUSE Structural maintenance of chromosomes protein 4 OS=Mus musculus
GN=Smc4 PE=1 SV=1
Length = 1286
Score = 202 bits (515), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 131/356 (36%), Positives = 182/356 (51%), Gaps = 92/356 (25%)
Query: 68 ADPTGPRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEI 127
++ PRL+IT IV NFKSYAG LGPF
Sbjct: 73 SEAGAPRLMITHIVNQNFKSYAGEKVLGPF------------------------------ 102
Query: 128 IGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKI 187
+KRF+ IIGPNGSGKSNVID SMLFVFGYRA KI
Sbjct: 103 -----HKRFSCIIGPNGSGKSNVID----------------------SMLFVFGYRAQKI 135
Query: 188 RANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYY 247
R+ KLSVL+H SD+ + C+V +HF +IIDK ++YE++P ++ ++RTA+ D++S Y
Sbjct: 136 RSKKLSVLIHNSDEHKDIQSCTVEVHFQKIIDKEGDDYEVLPNSNFYVSRTAYRDSTSVY 195
Query: 248 TLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQ---EPIAKM------------------- 285
++GKK FK+V +LR HG+DL +NRFLILQ E IA M
Sbjct: 196 HISGKKKTFKDVGNLLRSHGIDLDHNRFLILQGEVEQIAMMKPKGQTEHDEGMLEYLEDI 255
Query: 286 ----------EVLYGK---YDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQR 332
+VL + +E R EKL RV++VE + ALE E A+ FL LEN + +
Sbjct: 256 IGCGRLNEPIKVLCRRVEILNEHRGEKLNRVKMVEKEKDALEGEKNIAIEFLTLENEMFK 315
Query: 333 KHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
K N I QY Y + E T+ +++ ++ E ++EM++ + +K VE
Sbjct: 316 KKNHICQYYIYDLQNRIAEITTQKEKIHEDTKEITEKSNVLSNEMKAKNSAVKDVE 371
>sp|Q9ERA5|SMC4_MICAR Structural maintenance of chromosomes protein 4 (Fragment)
OS=Microtus arvalis GN=SMC4 PE=2 SV=1
Length = 1243
Score = 199 bits (507), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/356 (36%), Positives = 182/356 (51%), Gaps = 92/356 (25%)
Query: 68 ADPTGPRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEI 127
++ PRL+IT IV NFKS AG LGPF
Sbjct: 30 SEAGAPRLMITHIVNQNFKSCAGEKILGPF------------------------------ 59
Query: 128 IGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKI 187
+KRF+ IIGPNGSGKSNVID SMLFVFGYRA KI
Sbjct: 60 -----HKRFSCIIGPNGSGKSNVID----------------------SMLFVFGYRAQKI 92
Query: 188 RANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYY 247
R+ KLSVL+H SD+ + C+V +HF +IIDK ++YE+IP ++ ++RTA+ DN+S Y
Sbjct: 93 RSKKLSVLIHNSDEHKDIQSCTVEVHFQKIIDKEGDDYEVIPNSNFCVSRTAYRDNTSVY 152
Query: 248 TLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQ---EPIAKM------------------- 285
++GKK FK+V +LR HG+DL +NRFLILQ E IA M
Sbjct: 153 HISGKKRTFKDVGNLLRSHGIDLDHNRFLILQGEVEQIAMMKPKGQTEHDEGMLEYLEDI 212
Query: 286 ----------EVLYGKYD---EERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQR 332
+VL + + E R EKL RV++VE + A+E E A+ FL LE + +
Sbjct: 213 IGCGRLNEPIKVLCRRVEILNENRGEKLNRVKMVEKEKDAVEGEKNIAIEFLTLEKEMFK 272
Query: 333 KHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
K N + QY Y K + E +T+ +++ ++ E ++EM++ + +K +E
Sbjct: 273 KKNHVCQYYIYDLQKRIDEMKTQKEKIHEDTKEITEKSNMLSNEMKAKNSAVKDIE 328
>sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4 OS=Arabidopsis
thaliana GN=SMC4 PE=2 SV=1
Length = 1241
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 114/226 (50%), Gaps = 61/226 (26%)
Query: 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNR 132
PRL I ++V NFKSYAG +GPF
Sbjct: 22 PRLYIKELVMRNFKSYAGEQRVGPF----------------------------------- 46
Query: 133 YKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKL 192
+K F+A++GPNGSGKSNVI D+MLFVFG RA ++R NK+
Sbjct: 47 HKSFSAVVGPNGSGKSNVI----------------------DAMLFVFGKRAKQMRLNKV 84
Query: 193 SVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGK 252
S L+H S + V++ F +IID N YE +PG+D I R AF DNSS Y +N +
Sbjct: 85 SELIHNSTNHQNLDSAGVSVQFEEIIDLENGLYETVPGSDFMITRVAFRDNSSKYYINER 144
Query: 253 KVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKMEVL----YGKYDE 294
+F EV K L+ GVDL NNRFLILQ + ++ ++ G +DE
Sbjct: 145 SSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDE 190
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRY 133
GEVEQIS+M PK + + G LEYLE+IIGTN+Y
Sbjct: 172 GEVEQISLMKPKAQGPHDEGFLEYLEDIIGTNKY 205
>sp|Q12267|SMC4_YEAST Structural maintenance of chromosomes protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC4 PE=1
SV=1
Length = 1418
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 115/354 (32%), Positives = 167/354 (47%), Gaps = 102/354 (28%)
Query: 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRY 133
RL I ++V NFKSYAG +GPF+T
Sbjct: 153 RLFINELVLENFKSYAGKQVVGPFHTS--------------------------------- 179
Query: 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLS 193
F+A++GPNGSGKSNVID SMLFVFG+RA+K+R ++LS
Sbjct: 180 --FSAVVGPNGSGKSNVID----------------------SMLFVFGFRANKMRQDRLS 215
Query: 194 VLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEI---IPGTDLEIARTAFYDNSSYYTLN 250
L+HKS+ + CSVA+HF +ID+ + I PG L I R AF +NSS Y +N
Sbjct: 216 DLIHKSEAFPSLQSCSVAVHFQYVIDESSGTSRIDEEKPG--LIITRKAFKNNSSKYYIN 273
Query: 251 GKKVHFKEVAKVLRDHGVDLLNNRFLILQ---EPIAKM-------------EVL------ 288
K+ + EV K+L++ G+DL + RFLILQ E IA+M E L
Sbjct: 274 EKESSYTEVTKLLKNEGIDLDHKRFLILQGEVENIAQMKPKAEKESDDGLLEYLEDIIGT 333
Query: 289 --YGKYDEERT-----------EKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHN 335
Y EER EK R ++V+ + +LE A+ FLE E + +
Sbjct: 334 ANYKPLIEERMGQIENLNEVCLEKENRFEIVDREKNSLESGKETALEFLEKEKQLTLLRS 393
Query: 336 EIYQYERYVNMKNLGEHETKV----QQMEQELTANLESIKKCTDEMESAKTELK 385
+++Q++ + L K+ + +E E ES+KK DE+++ + E+K
Sbjct: 394 KLFQFKLLQSNSKLASTLEKISSSNKDLEDEKMKFQESLKKV-DEIKAQRKEIK 446
>sp|Q20060|SMC4_CAEEL Structural maintenance of chromosomes protein 4 OS=Caenorhabditis
elegans GN=smc-4 PE=1 SV=1
Length = 1549
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 133/249 (53%), Gaps = 39/249 (15%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVG-GVSRCSVAIHFAQ 216
F +IIGPNGSGKSN+IDS+LFVFG+RASKIR+ K+S L+HKS G +C+V IHF +
Sbjct: 116 FTSIIGPNGSGKSNLIDSLLFVFGFRASKIRSAKVSNLIHKS--AGRNPDKCTVTIHFQR 173
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
I+D P YE++ ++ I+RTAF +NSS Y ++G+ EV LR +D+ +NRFL
Sbjct: 174 IVDIPG-HYEVVKDSEFTISRTAFQNNSSSYAIDGRPATKNEVEARLRRVDIDIEHNRFL 232
Query: 277 ILQ---EPIAKMEVLYGKYDE-------------ERTEKLT-----RVQLVETDLK---- 311
ILQ E IA M+ + E R E RV + DL
Sbjct: 233 ILQGEVEQIAMMKPVKTTKSETGMVEYLEDIIGTNRLEPFVKLFQRRVNRLTCDLSQQRI 292
Query: 312 ----------ALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQ 361
A+E +R A+ FL EN H ++ Q R + + + ++ +M++
Sbjct: 293 ARDHARNSKVAMENPVRAAIEFLMKENEATTIHMKLEQRRRQRYLDKIAPKQAELDKMKE 352
Query: 362 ELTANLESI 370
E+ + E++
Sbjct: 353 EMKSIAETL 361
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 30/37 (81%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRF 136
GEVEQI+MM P T+ ETG++EYLE+IIGTNR + F
Sbjct: 236 GEVEQIAMMKPVKTTKSETGMVEYLEDIIGTNRLEPF 272
>sp|Q54LV0|SMC4_DICDI Structural maintenance of chromosomes protein 4 OS=Dictyostelium
discoideum GN=smc4 PE=3 SV=1
Length = 1415
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 93/137 (67%), Gaps = 9/137 (6%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQI 217
F++++GPNGSGKSNVID+MLFVFGYRA +IR NK+S L+H S+ ++ V++HF +I
Sbjct: 184 FSSVVGPNGSGKSNVIDAMLFVFGYRAKQIRLNKISELIHNSENHKNLTNGRVSVHFQEI 243
Query: 218 IDKPNEE-YEIIPGTDLEIARTAF-----YDNSSYYTLNGKKVHFKEVAKVLRDHGVDLL 271
ID P E+ YE++ G++ + RTA D S Y LN K V ++ +L+D G+DL
Sbjct: 244 IDLPGEDNYEVVKGSEFVVTRTAQKTGNNKDGVSKYYLNDKVVKLDDLKTILKDKGIDLD 303
Query: 272 NNRFLILQ---EPIAKM 285
NNRFLILQ E IA M
Sbjct: 304 NNRFLILQGEVEQIAMM 320
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 27/34 (79%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRY 133
GEVEQI+MM PKG E GLLEYLE+IIG+ +Y
Sbjct: 312 GEVEQIAMMKPKGVHPGEEGLLEYLEDIIGSKKY 345
>sp|P41004|SMC4_SCHPO Structural maintenance of chromosomes protein 4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cut3 PE=1 SV=2
Length = 1324
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 143/265 (53%), Gaps = 39/265 (14%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQI 217
F++I+GPNGSGKSNVID++LFVFG+RASK+R +K S L+HKS + C V I F ++
Sbjct: 150 FSSIVGPNGSGKSNVIDALLFVFGFRASKLRQSKASALIHKSATHPSLDSCDVEITFKEV 209
Query: 218 IDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLI 277
N ++ + G++L + RTA+ +N+S Y +NG + F V+ +L++ G+DL + RFLI
Sbjct: 210 ----NSDFTYVDGSELTVRRTAYKNNTSKYFVNGVESSFSAVSNLLKEKGIDLNHKRFLI 265
Query: 278 LQ---EPIAKME------------------VLYGKY--------------DEERTEKLTR 302
LQ E IA+M+ + KY D+ EK +R
Sbjct: 266 LQGEVESIAQMKPRAISEGDDGLLEYLEDIIGTSKYKPIIEENMQELSNSDDICAEKESR 325
Query: 303 VQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQE 362
++LV ++ LE ++FL+ EN + K N++Y+ Y + + +E +
Sbjct: 326 LKLVLSEKAKLEDSKNSVLSFLKDENELFMKQNQLYRTILYETRNKKTLVQNLLNSLEGK 385
Query: 363 LTANLESIKKCTDEMESAKTELKTV 387
L A+LE ++ ++ E+K++
Sbjct: 386 LQAHLEKFEQTERDISEKNEEVKSL 410
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYK 134
GEVE I+ M P+ +E + GLLEYLE+IIGT++YK
Sbjct: 268 GEVESIAQMKPRAISEGDDGLLEYLEDIIGTSKYK 302
>sp|P48996|DPY27_CAEEL Chromosome condensation protein dpy-27 OS=Caenorhabditis elegans
GN=dpy-27 PE=1 SV=1
Length = 1469
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 107/236 (45%), Gaps = 66/236 (27%)
Query: 57 VYIPPIAPVCFADPTGPRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEK 116
V IPP +DP G R+II I NFKSYAG
Sbjct: 73 VQIPPKYEDQISDPDGNRMIILNIYVENFKSYAG-------------------------- 106
Query: 117 ETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSM 176
I+GP I+GPNGSGKSNVID++
Sbjct: 107 --------------------KHILGPFHKN-----------LTMILGPNGSGKSNVIDAL 135
Query: 177 LFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNE---EYEIIPGTDL 233
LFVFG++A KIR KLS L++ G CSV I F + D P E +YE++ +
Sbjct: 136 LFVFGFKAGKIRTKKLSALINSG---GNYESCSVTIMFQMVKDMPVENYDKYEVLTDNCV 192
Query: 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQ---EPIAKME 286
I RT +N+S Y ++ K K+V ++L G+D+ +NRFLILQ E IA M+
Sbjct: 193 CITRTINRENNSKYRIDDKDASQKDVQELLLRAGIDMTHNRFLILQGEVEAIALMK 248
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRY 133
GEVE I++M P K E G+LEY+E+I+GTNR+
Sbjct: 239 GEVEAIALMKPTSKNPNEEGMLEYIEDIVGTNRF 272
>sp|P38989|SMC2_YEAST Structural maintenance of chromosomes protein 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC2 PE=1
SV=1
Length = 1170
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 122/254 (48%), Gaps = 34/254 (13%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRA-SKIRANKLSVLMHKSDQVGGVSRCSVAIHFA 215
+FNAI G NGSGKSN++D++ FV G + S +RA+ L L++K Q GV++ SV I F
Sbjct: 26 QFNAITGLNGSGKSNILDAICFVLGIASMSTVRASSLQDLIYKRGQ-AGVTKASVTIVFD 84
Query: 216 QIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRF 275
DK N + + R +S Y +NG + + V ++ + +++ N F
Sbjct: 85 N-TDKSNSPIGFTNSPQISVTRQVVLGGTSKYLINGHRAPQQSVLQLFQSVQLNINNPNF 143
Query: 276 LILQEPIAKM-------------EVLYGKYDEERTEKLTR-VQLVETDLK--------AL 313
LI+Q I K+ E K E+R EK R + ET L+ +
Sbjct: 144 LIMQGKITKVLNMKPSEILSLIEEAAGTKMFEDRREKAERTMSKKETKLQENRTLLTEEI 203
Query: 314 EPELRKAVN----FLELENC---VQRKHNEIYQYERY-VNMKNLGEHETKVQQMEQELTA 365
EP+L K N FLE ++ +++ + YE Y + K+ ET ++ E +
Sbjct: 204 EPKLEKLRNEKRMFLEFQSTQTDLEKTERIVVSYEYYNIKHKHTSIRET-LENGETRMKM 262
Query: 366 NLESIKKCTDEMES 379
E +KK ++E++S
Sbjct: 263 LNEFVKKTSEEIDS 276
>sp|Q8IED2|SMC2_PLAF7 Structural maintenance of chromosomes protein 2 OS=Plasmodium
falciparum (isolate 3D7) GN=MAL13P1.96 PE=3 SV=1
Length = 1218
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 139/285 (48%), Gaps = 40/285 (14%)
Query: 123 YLEEIIGTNRYKRF--NAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVF 180
Y+EEII + +K + +IGP +FNAI G NGSGKSNV+D++ FV
Sbjct: 2 YIEEII-LDGFKSYPTKTVIGPFHP-----------QFNAITGLNGSGKSNVLDAICFVM 49
Query: 181 GY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLE---IA 236
G + IR N+L L++K Q G+++ SV I F +KP+ E P D++ I
Sbjct: 50 GINNLNLIRVNRLDELIYKQGQ-AGITKGSVTIKFNN-EEKPSPLQE--PYRDMKNITIT 105
Query: 237 RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAK------MEVLYG 290
R + Y LN K+++ + +++ N FLI+Q I K +E+L G
Sbjct: 106 RQIVLGGRNRYLLNSHNAKPKDISDFFQSLKLNINNPHFLIMQGKITKVINMKPIELL-G 164
Query: 291 KYDEERTEKLTRVQ-------LVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERY 343
+E KL V+ +V+ D K E+ K + F E+E + + E +Y ++
Sbjct: 165 LIEESSGTKLYEVKRTNAIKLMVKKDQKL--GEINKVL-FEEIEPTLVKLKKEKEEYNKF 221
Query: 344 VNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
V+ E KV+ + A + + KC +++E AK+E K +E
Sbjct: 222 VSNNEEIEKYEKVEIAYKYYVAK-KMMTKCEEKIEDAKSEEKILE 265
>sp|Q90988|SMC2_CHICK Structural maintenance of chromosomes protein 2 OS=Gallus gallus
GN=SMC2 PE=2 SV=1
Length = 1189
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 3/129 (2%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ F+ G S++RA+ L L++K+ Q GV++ +V+I F
Sbjct: 27 FNAITGLNGSGKSNILDSICFLLGISNLSQVRASSLQDLVYKNGQ-AGVNKATVSITFDN 85
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
DK N ++ I R + Y +NG V + G+++ N FL
Sbjct: 86 -SDKKNSPLGFENNDEITITRQVIVGGRNKYLINGMNASNNRVQDLFGSVGLNVNNPHFL 144
Query: 277 ILQEPIAKM 285
I+Q I K+
Sbjct: 145 IMQGQITKV 153
>sp|P41003|SMC2_SCHPO Structural maintenance of chromosomes protein 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cut14 PE=1 SV=2
Length = 1172
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 124/271 (45%), Gaps = 46/271 (16%)
Query: 150 VIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRC 208
VI + +FNAI G NGSGKSN++D++ FV G S +RA L L++K Q G++R
Sbjct: 19 VISNWDDQFNAITGLNGSGKSNILDAICFVLGITNMSTVRAQNLQDLIYKRGQ-AGITRA 77
Query: 209 SVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGV 268
SV I F D + + + R +S Y +NG + + V + + +
Sbjct: 78 SVTIVFNN-RDPASSPIGFENHPQVSVTRQIIMGGTSKYLINGHRALQQNVQNLFQSVQL 136
Query: 269 DLLNNRFLILQEPIAKM------EVLY-------GKYDEERTEKLTR--------VQLVE 307
++ N FLI+Q I K+ E+L + EER EK R V+ +
Sbjct: 137 NINNPNFLIMQGRITKVLNMKATEILSMIEEASGTRMFEERKEKAFRTMQRKEAKVEEIN 196
Query: 308 TDLK-ALEPELRK----AVNFLELE---NCVQRKHNEIYQYERY-VNMK----------- 347
T L+ +EP L K FLE + N ++R + Y+ Y +++K
Sbjct: 197 TLLREEIEPRLTKLRTEKKTFLEYQHIYNDLERLSHLCTAYDYYKLSLKVEELTVQASQK 256
Query: 348 --NLGEHETKVQQMEQELTANLESIKKCTDE 376
++ E E+ +Q +QE+ E IKK DE
Sbjct: 257 HSHIAEMESSLQTSKQEVLILKEKIKKIEDE 287
>sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1 OS=Arabidopsis
thaliana GN=SMC1 PE=2 SV=2
Length = 1218
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQI 217
F AIIGPNGSGKSN++D++ FV G R ++R ++L L++ D R A F ++
Sbjct: 34 FTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGSQLKDLIYAFDDRDKEQRGRKA--FVRL 91
Query: 218 IDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLI 277
+ Y++ G +L R+ S Y ++ + V+ E LR G+ + FL+
Sbjct: 92 V------YQMDDGVELRFTRSITSAGGSEYRIDNRVVNLDEYNGKLRSLGILVKARNFLV 145
Query: 278 LQ 279
Q
Sbjct: 146 FQ 147
>sp|Q8CG48|SMC2_MOUSE Structural maintenance of chromosomes protein 2 OS=Mus musculus
GN=Smc2 PE=1 SV=2
Length = 1191
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 3/129 (2%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ F+ G S++RA+ L L++K+ Q G+++ SV+I F
Sbjct: 27 FNAITGLNGSGKSNILDSICFLLGISNLSQVRASNLQDLVYKNGQ-AGITKASVSITFDN 85
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
DK ++ + R + Y +NG + V + G+++ N FL
Sbjct: 86 -SDKKQSPLGFEAHDEITVTRQVVIGGRNKYLINGVNANNTRVQDLFCSVGLNVNNPHFL 144
Query: 277 ILQEPIAKM 285
I+Q I K+
Sbjct: 145 IMQGRITKV 153
>sp|O95347|SMC2_HUMAN Structural maintenance of chromosomes protein 2 OS=Homo sapiens
GN=SMC2 PE=1 SV=2
Length = 1197
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 3/129 (2%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ F+ G S++RA+ L L++K+ Q G+++ SV+I F
Sbjct: 27 FNAITGLNGSGKSNILDSICFLLGISNLSQVRASNLQDLVYKNGQ-AGITKASVSITFDN 85
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
DK ++ + R + Y +NG + V + G+++ N FL
Sbjct: 86 -SDKKQSPLGFEVHDEITVTRQVVIGGRNKYLINGVNANNTRVQDLFCSVGLNVNNPHFL 144
Query: 277 ILQEPIAKM 285
I+Q I K+
Sbjct: 145 IMQGRITKV 153
>sp|Q9SN90|SMC22_ARATH Structural maintenance of chromosomes protein 2-2 OS=Arabidopsis
thaliana GN=SMC2-2 PE=2 SV=1
Length = 1171
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 19/143 (13%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ FV G ++RA L L++K Q G++R +V++ F
Sbjct: 27 FNAITGLNGSGKSNILDSICFVLGITNLQQVRAANLQELVYKQGQ-AGITRATVSVTF-- 83
Query: 217 IIDKPNEEYEIIP-----GTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLL 271
N E P +++ + R + Y +NGK +V + +++
Sbjct: 84 ----DNSERNRSPLGHEDHSEITVTRQIVVGGKNKYLINGKLAQPNQVQNLFHSVQLNVN 139
Query: 272 NNRFLILQEPIAK------MEVL 288
N FLI+Q I K ME+L
Sbjct: 140 NPHFLIMQGRITKVLNMKPMEIL 162
>sp|Q54PK4|SMC2_DICDI Structural maintenance of chromosomes protein 2 OS=Dictyostelium
discoideum GN=smc2 PE=3 SV=1
Length = 1184
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 15/165 (9%)
Query: 123 YLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGY 182
Y+E+II I G VI+ FNAI G NGSGKSN++DS+ FV G
Sbjct: 2 YIEDII----------IDGFKSYANRTVIEGFDPTFNAITGLNGSGKSNILDSICFVLGI 51
Query: 183 -RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGTDLEIARTAF 240
S++R + L L++K Q G+++ SV I F K + YE + + + R
Sbjct: 52 SNLSQVRVDSLQELVYKKGQ-AGITKASVTITFNNSDKKQSPAGYEHLD--KITVTRQVA 108
Query: 241 YDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM 285
+ Y +NG V + +++ N FLI+Q I K+
Sbjct: 109 IGGRNKYLINGHNAQLSRVQDLFHSVQLNVNNPHFLIMQGRITKV 153
>sp|P50533|SMC2_XENLA Structural maintenance of chromosomes protein 2 OS=Xenopus laevis
GN=smc2 PE=1 SV=1
Length = 1203
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 3/129 (2%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ F+ G +++RA+ L L++K+ Q G+++ +V+I F
Sbjct: 27 FNAITGLNGSGKSNILDSICFLLGISNLTQVRASNLQDLVYKNGQ-AGITKATVSITFDN 85
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
DK ++ + R + Y +NG + V + G+++ N FL
Sbjct: 86 -YDKKQSPLGFEAHDEITVTRQVVIGGRNKYLINGVNANNTRVQDLFCSVGLNVNNPHFL 144
Query: 277 ILQEPIAKM 285
I+Q I K+
Sbjct: 145 IMQGRITKV 153
>sp|Q14683|SMC1A_HUMAN Structural maintenance of chromosomes protein 1A OS=Homo sapiens
GN=SMC1A PE=1 SV=2
Length = 1233
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 107/243 (44%), Gaps = 32/243 (13%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF AIIGPNGSGKSN++D++ FV G + S +R L L+H + V + + F
Sbjct: 26 RFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGA----PVGKPAANRAFVS 81
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
++ Y D AR SS Y +N K V E ++ L G+ + FL
Sbjct: 82 MV------YSEEGAEDRTFARV-IVGGSSEYKINNKVVQLHEYSEELEKLGILIKARNFL 134
Query: 277 ILQ------------------EPIAKMEVLYGKYDEERTEKLTR---VQLVETDLKALEP 315
+ Q E I++ L +YD+ + E + Q K +
Sbjct: 135 VFQGAVESIAMKNPKERTALFEEISRSGELAQEYDKRKKEMVKAEEDTQFNYHRKKNIAA 194
Query: 316 ELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTD 375
E ++A E + QR +E+ + + + + L +E +++++ +EL + + I+K
Sbjct: 195 ERKEAKQEKEEADRYQRLKDEVVRAQVQLQLFKLYHNEVEIEKLNKELASKNKEIEKDKK 254
Query: 376 EME 378
M+
Sbjct: 255 RMD 257
>sp|Q9C5Y4|SMC21_ARATH Structural maintenance of chromosomes protein 2-1 OS=Arabidopsis
thaliana GN=SMC2-1 PE=2 SV=2
Length = 1175
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 17/136 (12%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ FV G ++RA L L++K Q G+++ +V++ F
Sbjct: 27 FNAITGLNGSGKSNILDSICFVLGITNLQQVRAANLQELVYKQGQ-AGITKATVSVTF-- 83
Query: 217 IIDKPNEE-------YEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVD 269
N E YE P ++ + R + Y +NGK +V + ++
Sbjct: 84 ----DNSERHRSPLGYEEHP--EITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLN 137
Query: 270 LLNNRFLILQEPIAKM 285
+ N FLI+Q I K+
Sbjct: 138 VNNPHFLIMQGRITKV 153
>sp|Q9CU62|SMC1A_MOUSE Structural maintenance of chromosomes protein 1A OS=Mus musculus
GN=Smc1a PE=1 SV=4
Length = 1233
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 107/243 (44%), Gaps = 32/243 (13%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF AIIGPNGSGKSN++D++ FV G + S +R L L+H + V + + F
Sbjct: 26 RFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGA----PVGKPAANRAFVS 81
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
++ Y D AR SS Y +N K V E ++ L G+ + FL
Sbjct: 82 MV------YSEEGAEDRTFARV-IVGGSSEYKINNKVVQLHEYSEELEKLGILIKARNFL 134
Query: 277 ILQ------------------EPIAKMEVLYGKYDEERTEKLTR---VQLVETDLKALEP 315
+ Q E I++ L +YD+ + E + Q K +
Sbjct: 135 VFQGAVESIAMKNPKERTALFEEISRSGELAQEYDKRKKEMVKAEEDTQFNYHRKKNIAA 194
Query: 316 ELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTD 375
E ++A E + QR +E+ + + + + L +E +++++ +EL + + I+K
Sbjct: 195 ERKEAKQEKEEADRYQRLKDEVVRAQVQLQLFKLYHNEVEIEKLNKELASKNKEIEKDKK 254
Query: 376 EME 378
M+
Sbjct: 255 RMD 257
>sp|O97593|SMC1A_BOVIN Structural maintenance of chromosomes protein 1A OS=Bos taurus
GN=SMC1A PE=1 SV=1
Length = 1233
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 107/243 (44%), Gaps = 32/243 (13%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF AIIGPNGSGKSN++D++ FV G + S +R L L+H + V + + F
Sbjct: 26 RFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGA----PVGKPAANRAFVS 81
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
++ Y D AR SS Y +N K V E ++ L G+ + FL
Sbjct: 82 MV------YSEEGAEDRTFARV-IVGGSSEYKINNKVVQLHEYSEELEKLGILIKARNFL 134
Query: 277 ILQ------------------EPIAKMEVLYGKYDEERTEKLTR---VQLVETDLKALEP 315
+ Q E I++ L +YD+ + E + Q K +
Sbjct: 135 VFQGAVESIAMKNPKERTALFEEISRSGELAQEYDKRKKEMVKAEEDTQFNYHRKKNIAA 194
Query: 316 ELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTD 375
E ++A E + QR +E+ + + + + L +E +++++ +EL + + I+K
Sbjct: 195 ERKEAKQEKEEADRYQRLKDEVVRAQVQLQLFKLYHNEVEIEKLNKELASKNKEIEKDKK 254
Query: 376 EME 378
M+
Sbjct: 255 RMD 257
>sp|Q9Z1M9|SMC1A_RAT Structural maintenance of chromosomes protein 1A OS=Rattus
norvegicus GN=Smc1a PE=1 SV=1
Length = 1233
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 14/141 (9%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF AIIGPNGSGKSN++D++ FV G + S +R L L+H + V + + F
Sbjct: 26 RFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGA----PVGKPAANRAFVS 81
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
++ Y D AR SS Y +N K V E ++ L G+ + FL
Sbjct: 82 MV------YSEEGAEDRTFARV-IVGGSSEYKINNKVVQLHEYSEELEKLGILIKARNFL 134
Query: 277 ILQEPIAKMEVLYGKYDEERT 297
+ Q + E + K +ERT
Sbjct: 135 VFQGAV---ESIAMKNPKERT 152
>sp|Q9HK21|SMC_THEAC Chromosome partition protein Smc OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=smc PE=3 SV=1
Length = 1140
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 27/197 (13%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYRA-SKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
N I GPNGSGKSN+ D +LFV G ++ +RA++LS L+ K G + CSV++ F
Sbjct: 28 LNVISGPNGSGKSNIGDMLLFVLGTKSIHAVRADRLSDLVSK----GSGNECSVSVTFRS 83
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDN--SSYYTLNGKKVHFKEVAKVLRDHGVDLLNNR 274
G L I R ++ SYY +NG + E+ + L G++
Sbjct: 84 -----------DDGRSLVIERRLVIEDEPKSYYYVNGVRSRLSEIDETLASMGINFGTYS 132
Query: 275 FLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCV---- 330
F +LQ I G+ + E+++ V +++++ ++ ++ +E+ +
Sbjct: 133 F-VLQGDINDFISYSGQERRKLIERISGVDQFDSEIERVKADIEAVSRNMEINQTIIDEK 191
Query: 331 ----QRKHNEIYQYERY 343
+R E + ERY
Sbjct: 192 RQNLERLRTEKEKKERY 208
>sp|B8CW13|SMC_HALOH Chromosome partition protein Smc OS=Halothermothrix orenii (strain
H 168 / OCM 544 / DSM 9562) GN=smc PE=3 SV=1
Length = 1185
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 67/113 (59%), Gaps = 11/113 (9%)
Query: 160 AIIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLS-VLMHKSDQVGGVSRCSVAIHFAQI 217
AI+GPNGSGKSN++D++ +V G +++K +R ++++ V+ S +++ SV ++
Sbjct: 28 AIVGPNGSGKSNIVDAIRWVLGEQSAKTLRGSRMADVIFAGSKDYKALNKASVTLYL--- 84
Query: 218 IDKPNEEYEIIP--GTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGV 268
+ + +I+P + ++I+R D S Y LNGK K++ +L D G+
Sbjct: 85 ----DNQDKILPLDVSTVKISRKVNMDGQSDYYLNGKICRLKDIENLLMDTGL 133
>sp|O93308|SMC1A_XENLA Structural maintenance of chromosomes protein 1A OS=Xenopus laevis
GN=smc1a PE=1 SV=1
Length = 1232
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 30/161 (18%)
Query: 139 IIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHK 198
IIGP RF AIIGPNGSGKSN++D++ FV G + S +R L L+H
Sbjct: 20 IIGP------------FHRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHG 67
Query: 199 SDQVG--GVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHF 256
+ VG +R V++ +++ + +I G SS Y +N K V
Sbjct: 68 AP-VGKPAANRAFVSMVYSEDSGEEKVFSRVIVG------------GSSEYKINNKVVQL 114
Query: 257 KEVAKVLRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEERT 297
E + L G+ + FL+ Q + E + K +ERT
Sbjct: 115 SEYSDSLEKLGILIKARNFLVFQGAV---ESIAMKNPKERT 152
>sp|P32908|SMC1_YEAST Structural maintenance of chromosomes protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC1 PE=1
SV=1
Length = 1225
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 26/146 (17%)
Query: 144 GSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKS---- 199
G G+SN F +IIGPNGSGKSN++D++ FV G R++ +R+N L L+++
Sbjct: 22 GFGESN--------FTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNILKDLIYRGVLND 73
Query: 200 ------DQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKK 253
D G S + + K N+ E++ R + + Y ++GK
Sbjct: 74 ENSDDYDNEGAASSNPQSAYVKAFYQKGNKLVELM--------RIISRNGDTSYKIDGKT 125
Query: 254 VHFKEVAKVLRDHGVDLLNNRFLILQ 279
V +K+ + L + + + FL+ Q
Sbjct: 126 VSYKDYSIFLENENILIKAKNFLVFQ 151
>sp|Q9CBT5|SMC_MYCLE Chromosome partition protein Smc OS=Mycobacterium leprae (strain
TN) GN=smc PE=3 SV=1
Length = 1203
Score = 58.9 bits (141), Expect = 6e-08, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 160 AIIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLSVLMHKSDQVGGVSRCSVAIHFAQII 218
A++GPNGSGKSNV+D++ +V G + +K +R +K+ ++ G +SR + +I
Sbjct: 28 AVVGPNGSGKSNVVDALAWVMGEQGAKTLRGSKMEDVIF----AGTLSRAPLGRAEVTLI 83
Query: 219 DKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGV 268
++ I +++ I R F D +S Y +NG +V ++L D G+
Sbjct: 84 IDNSDNVLPIEYSEVSITRRMFRDGASEYEINGSSCRLMDVQELLSDSGI 133
>sp|Q10970|SMC_MYCTU Chromosome partition protein Smc OS=Mycobacterium tuberculosis
GN=smc PE=3 SV=2
Length = 1205
Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Query: 160 AIIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLS-VLMHKSDQVGGVSRCSVAIHFAQI 217
A++GPNGSGKSNV+D++ +V G + +K +R K+ V+ + + R V +
Sbjct: 28 AVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGKMEDVIFAGTSSRAPLGRAEVTVSIDNS 87
Query: 218 IDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGV 268
+ EY T++ I R F D +S Y +NG +V ++L D G+
Sbjct: 88 DNALPIEY-----TEVSITRRMFRDGASEYEINGSSCRLMDVQELLSDSGI 133
>sp|Q604U6|SMC_METCA Chromosome partition protein Smc OS=Methylococcus capsulatus
(strain ATCC 33009 / NCIMB 11132 / Bath) GN=smc PE=3
SV=2
Length = 1169
Score = 57.8 bits (138), Expect = 1e-07, Method: Composition-based stats.
Identities = 61/248 (24%), Positives = 111/248 (44%), Gaps = 24/248 (9%)
Query: 160 AIIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLS-VLMHKSDQVGGVSRCSVAIHFAQI 217
++GPNG GKSNVID++ +V G +++ +R ++ V+ + S S+ SV + F
Sbjct: 28 GVVGPNGCGKSNVIDAVRWVMGESSARHLRGETMADVIFNGSSTRKPASQASVELVFDNS 87
Query: 218 IDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRF-- 275
+ EY + I R D S Y LNG + K++ + G+ +
Sbjct: 88 SGRAGGEYARY--QQIAIRRQVARDGQSSYFLNGTRCRRKDITDLFLGTGLGARSYAIIE 145
Query: 276 ------LILQEPIAKMEVL-----YGKYDEERTEKLTRVQLVETDLKA---LEPELRKAV 321
LI +P E++ KY E R E R++ +L+ L EL + +
Sbjct: 146 QGTISRLIEAKPEEMREIIEEAAGISKYKERRHETEQRMRHTRENLERLADLREELGRQL 205
Query: 322 NFLELENCVQRKHNEIYQYERYVNMKNLGEH----ETKVQQMEQELTANLESIKKCTDEM 377
L+ + K + ER + ++ LG E ++ +++ ELT + E ++ T E
Sbjct: 206 GHLQRQARKAEKFIALRDEERRLKLELLGLRWRALERQLDRLKAELTDSEERFRRLTGEE 265
Query: 378 ESAKTELK 385
+ +T+L+
Sbjct: 266 HACETQLE 273
>sp|O66878|SMC_AQUAE Chromosome partition protein Smc OS=Aquifex aeolicus (strain VF5)
GN=smc PE=3 SV=1
Length = 1156
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 8/112 (7%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
F A++GPNG+GKSN+ D++ F G ++K +RA LS L+ S V +HF
Sbjct: 31 FIAVVGPNGAGKSNIGDAISFALGLSSAKALRAKNLSYLIF-SKNGQKADHAYVEVHFKN 89
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGV 268
+ P E+ E++ I+R D S + +NG+ V +++ L G+
Sbjct: 90 LGAFPVEDEEVV------ISRKVSKDGRSIFKINGQVVRERDLKDFLAKAGI 135
>sp|Q73VM3|SMC_MYCPA Chromosome partition protein Smc OS=Mycobacterium paratuberculosis
(strain ATCC BAA-968 / K-10) GN=smc PE=3 SV=2
Length = 1196
Score = 56.6 bits (135), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 7/111 (6%)
Query: 160 AIIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLS-VLMHKSDQVGGVSRCSVAIHFAQI 217
A++GPNGSGKSNV+D++ +V G + +K +R K+ V+ + + R V +
Sbjct: 28 AVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGKMEDVIFAGTSSRAPLGRAEVTV----T 83
Query: 218 IDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGV 268
ID + I +++ I R F D +S Y +NG +V ++L D G+
Sbjct: 84 IDNSDNALP-IEYSEVSITRRMFRDGASEYEINGSSCRLMDVQELLSDSGI 133
>sp|Q81ZL2|SMC_COXBU Chromosome partition protein Smc OS=Coxiella burnetii (strain RSA
493 / Nine Mile phase I) GN=smc PE=3 SV=1
Length = 1169
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLS-VLMHKSDQVGGVSRCSVAIHFA 215
NAI+GPNG GKSNV+D++ +V G ++K +R +S V+ + + V + S+ +HF
Sbjct: 26 MNAIVGPNGCGKSNVVDAVRWVIGETSAKQLRGQSMSDVIFNGTTSRKPVGKASIELHFD 85
Query: 216 QIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGV 268
+ EY ++ I R D S Y +NG V ++V V G+
Sbjct: 86 NSEGRIGGEY--AKYGEIAIRREVERDGQSNYFINGAHVRRRDVVDVFLGTGL 136
>sp|Q8TZY2|SMC_PYRFU Chromosome partition protein Smc OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=smc PE=1 SV=2
Length = 1177
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 11/110 (10%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVF-GYRASKIRANKLSVLMHKSDQVGGVSR-CSVAIHFA 215
F AI+G NGSGKSN+ D++LFV G A +RA+++S L+ + ++ VAI+F
Sbjct: 28 FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFN 87
Query: 216 QIIDK--PNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVL 263
D+ P +E E++ I R + D S Y LNG++ E+ +L
Sbjct: 88 N-EDRGFPIDEDEVV------IRRRVYPDGRSSYWLNGRRATRSEILDIL 130
>sp|Q7NG51|SMC_GLOVI Chromosome partition protein Smc OS=Gloeobacter violaceus (strain
PCC 7421) GN=smc PE=3 SV=1
Length = 1165
Score = 55.1 bits (131), Expect = 9e-07, Method: Composition-based stats.
Identities = 65/270 (24%), Positives = 114/270 (42%), Gaps = 45/270 (16%)
Query: 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLSVLMHKSDQVGGVSRCSVAI 212
+L F + GPNGSGKSN+ID++LF G S+ +RA KLS L+H+ G ++ VA+
Sbjct: 22 LLEGFTVVSGPNGSGKSNIIDALLFALGLSTSRGMRAEKLSDLIHQ-----GAAKGEVAV 76
Query: 213 HFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLN 272
+D E+ L++ +++S Y LNG ++ + L H +
Sbjct: 77 TVTFALDAAAGGGELTVCRRLKVNGP---NSTSSYQLNGSPCTLTDLHEELARHHI-YPE 132
Query: 273 NRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPEL--------RKAVNFL 324
++LQ + + + + E ++L V + ++A EL R
Sbjct: 133 GYNVVLQGDVTGIIAMPARERREIIDELAGVAEFDRKIEAARRELGEVEVRSDRIQAVVS 192
Query: 325 ELENCVQRKHNEIYQYERYVNMK------NLGEHETKVQQME------------------ 360
EL ++R E + E Y ++ L EH V+ +E
Sbjct: 193 ELLEQMERLQKERAKAEEYRKLRAELGELALWEHLLSVRSLEAQIAQITSQLAAAEAVLA 252
Query: 361 ---QELTANLESIKKCTDEMESAKTELKTV 387
+E A E ++ DE+++A T +K +
Sbjct: 253 GFDREAEALAERCEQALDELDTANTRVKAM 282
>sp|Q59037|SMC_METJA Chromosome partition protein Smc OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=smc PE=3 SV=2
Length = 1169
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 32/40 (80%), Gaps = 1/40 (2%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFG-YRASKIRANKLSVLM 196
F AI+GPNGSGKSN++D++LFV G A K+RAN+ S L+
Sbjct: 26 FTAIVGPNGSGKSNIVDAILFVLGKTSAKKLRANRFSGLI 65
>sp|Q88WJ9|SMC_LACPL Chromosome partition protein Smc OS=Lactobacillus plantarum (strain
ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=smc PE=3 SV=1
Length = 1185
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 13/157 (8%)
Query: 145 SGKSNVIDSMLFRFNA----IIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLSVLMHKS 199
SG + D F A I+GPNGSGKSN+I+++ +V G +A K +R K++ ++
Sbjct: 9 SGFKSFADKTKIDFQAGMTGIVGPNGSGKSNIIEAIRWVLGEQAVKSLRGTKMTDVIF-- 66
Query: 200 DQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEV 259
G +R + + I ++ + + ++ I R F + S Y +N + K++
Sbjct: 67 --AGSANRKPLNMAKVTITFDNSDHFLPLDYAEVSITRKLFRNGDSDYLINNQSCRLKDI 124
Query: 260 AKVLRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEER 296
++ D G L + F ++ + ++E ++ EER
Sbjct: 125 TNLMIDTG--LGKDSFSVISQ--GRVEAVFNAKPEER 157
>sp|Q920F6|SMC1B_MOUSE Structural maintenance of chromosomes protein 1B OS=Mus musculus
GN=Smc1b PE=1 SV=1
Length = 1248
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMH 197
RF IIGPNGSGKSNV+D++ FV G + + +R + L+H
Sbjct: 26 RFTCIIGPNGSGKSNVMDALSFVMGEKTTNLRVKNIQELIH 66
>sp|B9E1H0|SMC_CLOK1 Chromosome partition protein Smc OS=Clostridium kluyveri (strain
NBRC 12016) GN=smc PE=3 SV=1
Length = 1185
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 34/210 (16%)
Query: 160 AIIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLSVLMHKSDQVGG-VSRCSVAIHFAQI 217
+I+GPNGSGKSN+ D++ +V G ++ K +R K+ ++ Q + C V++
Sbjct: 30 SIVGPNGSGKSNISDAVRWVLGEQSVKTLRGGKMEDVIFAGTQFRKPLGLCQVSLTLDNE 89
Query: 218 IDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHG---------- 267
K + EY +++ ++R + S Y +N + +++ ++ D G
Sbjct: 90 DKKLSLEY-----SNITVSRRLYRSGESEYYINNVQCRLRDIHELFMDTGIGREGYSIIG 144
Query: 268 ---VDLL-----NNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLV---------ETDL 310
+D L +R L+L+E ++ + + + E+ + T V L+ E L
Sbjct: 145 QGRIDALLSGKQEDRRLLLEEAAGIVKFRWRRSEAEKKLENTEVNLIRIEDILHTYEERL 204
Query: 311 KALEPELRKAVNFLELENCVQRKHNEIYQY 340
K LE E +KA FL L ++ K + Y
Sbjct: 205 KPLELENKKADEFLRLSEELKDKEKTVLIY 234
>sp|Q8NDV3|SMC1B_HUMAN Structural maintenance of chromosomes protein 1B OS=Homo sapiens
GN=SMC1B PE=1 SV=2
Length = 1235
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMH 197
RF IIGPNGSGKSNV+D++ FV G + + +R + L+H
Sbjct: 26 RFTCIIGPNGSGKSNVMDALSFVMGEKIANLRVKNIQELIH 66
>sp|O94383|SMC1_SCHPO Structural maintenance of chromosomes protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=psm1 PE=1 SV=2
Length = 1228
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 11/127 (8%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHK-----SDQVGGVSRCSVAI 212
F +IIGPNG+GKSN++D++ FV G ++S +R+ + L+++ D +
Sbjct: 27 FTSIIGPNGAGKSNLMDAISFVLGVKSSHLRSTNVKELIYRGKILQRDNTDFTDSSNPTT 86
Query: 213 HFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLN 272
+ +++ YE+ G E R ++ Y ++ + V F E L+ + +
Sbjct: 87 AYVKLM------YELDNGEQREYKRAITPSGATEYKIDEEIVTFSEYCGSLQKENILVRA 140
Query: 273 NRFLILQ 279
FL+ Q
Sbjct: 141 RNFLVFQ 147
>sp|Q8REH4|SMC_FUSNN Chromosome partition protein Smc OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=smc PE=3 SV=2
Length = 1183
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 152 DSMLFRFN----AIIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLSVLMHKSDQVGGVS 206
D + FN +I+GPNGSGKSN++D++L+V G ++ K IRA + ++ G
Sbjct: 16 DKVYIDFNRGITSIVGPNGSGKSNILDAVLWVLGEQSYKNIRAKESQDVIFSG---GKEK 72
Query: 207 RCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDH 266
+ + + IID + Y + ++I R + Y +N K KE+ + D
Sbjct: 73 KPATKAEVSLIIDNA-DRYLDLDNDTVKITRRIHISGENEYLINDTKSRLKEIGTLFLDT 131
Query: 267 GV 268
G+
Sbjct: 132 GI 133
>sp|Q5H054|SMC_XANOR Chromosome partition protein Smc OS=Xanthomonas oryzae pv. oryzae
(strain KACC10331 / KXO85) GN=smc PE=3 SV=2
Length = 1167
Score = 50.8 bits (120), Expect = 2e-05, Method: Composition-based stats.
Identities = 59/237 (24%), Positives = 112/237 (47%), Gaps = 25/237 (10%)
Query: 160 AIIGPNGSGKSNVIDSMLFVFG-YRASKIRANKLS-VLMHKSDQVGGVSRCSVAIHFAQI 217
I+GPNG GKSN+ID++ +V G AS++R + L+ V+ S VS+ +V + F
Sbjct: 28 GIVGPNGCGKSNIIDAVRWVMGESSASRLRGDSLTDVIFSGSSARKPVSQATVELIFDNS 87
Query: 218 IDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLI 277
+ E+ ++ + R D +S Y LNG K +++ + G L + I
Sbjct: 88 DHTISGEFASF--NEISVKRLVSRDGNSAYYLNGTKCRRRDITDLFL--GTGLGPRSYSI 143
Query: 278 LQEPI------AKMEVL---------YGKYDEERTEKLTRVQLVETDLKALEPELRKAVN 322
+++ + A+ E L KY E R E TR++ +L L +LR+ +
Sbjct: 144 IEQGMISQIIEARPEDLRVYLEEAAGISKYKERRKETETRIRHTRENLDRLG-DLREEIT 202
Query: 323 FLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMES 379
+L + +QR+ + QY+ + + + E K + + L L+ +++ ++ E+
Sbjct: 203 -KQLAH-LQRQARQAEQYQALQEERRIKDAEWKALEY-RGLDGQLQGLREKLNQEET 256
>sp|Q7UQV4|SMC_RHOBA Chromosome partition protein Smc OS=Rhodopirellula baltica (strain
SH1) GN=smc PE=3 SV=2
Length = 1192
Score = 50.8 bits (120), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 161 IIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLSVLMHKSDQVGGVSRCSVAIHFAQIID 219
++GPNGSGKSN++D+M +V G +++K +R +S ++ K Q G + + A I D
Sbjct: 28 VVGPNGSGKSNIVDAMKWVLGSQSAKSLRGKDMSDVIFKGSQTRGPAGAAEA---TIIFD 84
Query: 220 KPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDL 270
+ + ++ + R + Y +N + V K+V ++R G+ +
Sbjct: 85 NTGGQMP-VDAPEVHVTRRVYRSGEGEYLINQQAVRLKDVKALIRGTGIGI 134
>sp|Q09591|MIX1_CAEEL Mitotic chromosome and X-chromosome-associated protein mix-1
OS=Caenorhabditis elegans GN=mix-1 PE=1 SV=2
Length = 1244
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 10/130 (7%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ F+ G + IRA MH+ GG ++ V + F
Sbjct: 27 FNAITGYNGSGKSNILDSICFIMGINKLDNIRAKS----MHELISHGG-TKAIVQVRFDN 81
Query: 217 IIDKPN----EEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLN 272
+ + E + I + A+ ++ YTLNG ++ R G+++ N
Sbjct: 82 TDKRCSPFGMEHLDEIVVQRIITAQATGKGCATSYTLNGHAATNGKMQDFFRGVGLNVNN 141
Query: 273 NRFLILQEPI 282
FLI+Q I
Sbjct: 142 PHFLIMQGRI 151
>sp|P47037|SMC3_YEAST Structural maintenance of chromosomes protein 3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC3 PE=1
SV=1
Length = 1230
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 30/219 (13%)
Query: 150 VIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCS 209
+ID+ N IIG NGSGKSN ++ FV S ++ + L+H+ G V S
Sbjct: 19 IIDNFSPHQNVIIGSNGSGKSNFFAAIRFVLSDDYSNLKREERQGLIHQGSG-GSVMSAS 77
Query: 210 VAIHFAQIIDKPNEEYEIIP------GTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVL 263
V I F P+ I+P G D R Y LN + V ++ ++L
Sbjct: 78 VEIVFHD----PDHSM-ILPSGVLSRGDDEVTIRRTVGLKKDDYQLNDRNVTKGDIVRML 132
Query: 264 RDHGVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323
G +NN + I+ P K+ L D+E R+QL+E + A E++ +
Sbjct: 133 ETAGFS-MNNPYNIV--PQGKIVALTNAKDKE------RLQLLEDVVGAKSFEVKLKASL 183
Query: 324 LELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQE 362
++E Q+K +N K +GE +K+ +MEQE
Sbjct: 184 KKMEETEQKKIQ--------IN-KEMGELNSKLSEMEQE 213
>sp|A9II65|SMC_BORPD Chromosome partition protein Smc OS=Bordetella petrii (strain ATCC
BAA-461 / DSM 12804 / CCUG 43448) GN=smc PE=3 SV=2
Length = 1176
Score = 49.3 bits (116), Expect = 5e-05, Method: Composition-based stats.
Identities = 61/254 (24%), Positives = 116/254 (45%), Gaps = 37/254 (14%)
Query: 160 AIIGPNGSGKSNVIDSMLFVFG-YRASKIRANKLS-VLMHKSDQVGGVSRCSVAIHFAQI 217
++GPNG GKSN+ID++ +V G +AS++R + V+ + S +R SV + F
Sbjct: 28 GVVGPNGCGKSNIIDAVRWVLGEAKASELRGESMQDVIFNGSGNRKPAARASVEMVFDNS 87
Query: 218 IDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDL------- 270
+ ++ +++ + R D +S Y +N ++V +++ + G+
Sbjct: 88 EGRAAGQWSTY--SEIAVRRVLTRDGTSSYYVNNQQVRRRDIHDIFLGTGLGARGYAIIG 145
Query: 271 --LNNRFLILQEPIAKMEVLY------GKYDEERTEKLTRVQLVETDLKALEPELRK--- 319
+ NR LI P ++ V +Y E R E R+ +L +E LR+
Sbjct: 146 QGMINR-LIEARP-EELRVFLEEAAGVSRYKERRRETENRLSDTRENLTRVEDILRELGS 203
Query: 320 AVNFLELENCVQRKHNEIY------QYERYVNMKNLG---EHETKVQQMEQ---ELTANL 367
+ LE + V R++ E+ Q+ ++ +K G E + K Q+M Q L A +
Sbjct: 204 QLEKLEAQAEVARQYRELQADGEKKQFALWL-LKETGARDERQRKSQEMAQAQTNLEAAI 262
Query: 368 ESIKKCTDEMESAK 381
+++ E+ES +
Sbjct: 263 ANLRSGEAELESRR 276
>sp|B8GZ28|SMC_CAUCN Chromosome partition protein Smc OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=smc PE=1 SV=1
Length = 1147
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 97/236 (41%), Gaps = 53/236 (22%)
Query: 145 SGKSNVIDSMLFR----FNAIIGPNGSGKSNVIDSMLFVFGYRASK-IRANKL-SVLMHK 198
SG + ++ FR I+GPNG GKSN+++++ +V G ++K +RA + V+
Sbjct: 9 SGFKSFVEPTEFRIEPGLTGIVGPNGCGKSNLLEALRWVMGANSAKAMRAGGMDDVIFAG 68
Query: 199 SDQVGGVSRCSVAIHF--------AQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLN 250
S + V + AQ D P LE+ R S Y +N
Sbjct: 69 SGARPARNHADVTLTIDNADRTAPAQFNDDPI----------LEVVRRIDRGEGSTYRIN 118
Query: 251 GKKVHFKEVAKVLRDHGV--------------DLL----NNRFLILQEPIAKMEVLYGKY 292
G++V ++V + D +L+ NR IL+E A + L+ +
Sbjct: 119 GREVRARDVQLLFADASTGANSPALVRQGQISELIGAKPQNRRRILEE-AAGVSGLHTR- 176
Query: 293 DEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKN 348
R E R++ ET+L LE R ELE + R E Q E+Y + +
Sbjct: 177 ---RHEAELRLRAAETNLSRLEDVAR------ELETALNRLRREARQAEKYKRLSS 223
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,538,370
Number of Sequences: 539616
Number of extensions: 6659513
Number of successful extensions: 26625
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 238
Number of HSP's that attempted gapping in prelim test: 26055
Number of HSP's gapped (non-prelim): 766
length of query: 388
length of database: 191,569,459
effective HSP length: 119
effective length of query: 269
effective length of database: 127,355,155
effective search space: 34258536695
effective search space used: 34258536695
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)