Query psy14062
Match_columns 388
No_of_seqs 488 out of 3294
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 18:35:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1117 PstB ABC-type phosphat 100.0 1.3E-41 2.9E-46 303.0 0.4 205 74-324 7-222 (253)
2 COG1126 GlnQ ABC-type polar am 100.0 5.4E-41 1.2E-45 300.2 0.1 202 74-323 2-209 (240)
3 KOG0996|consensus 100.0 1.7E-34 3.6E-39 303.5 25.3 266 59-381 68-368 (1293)
4 COG1116 TauB ABC-type nitrate/ 100.0 4E-37 8.7E-42 282.4 2.8 197 74-323 3-204 (248)
5 COG1135 AbcC ABC-type metal io 100.0 2.1E-36 4.6E-41 283.4 3.1 208 75-322 2-214 (339)
6 COG1125 OpuBA ABC-type proline 100.0 8.7E-37 1.9E-41 278.6 -1.0 201 75-323 2-209 (309)
7 COG1120 FepC ABC-type cobalami 100.0 9.3E-36 2E-40 277.8 3.5 199 74-321 2-210 (258)
8 COG1136 SalX ABC-type antimicr 100.0 8.5E-36 1.8E-40 273.0 -1.4 205 75-321 2-213 (226)
9 COG1127 Ttg2A ABC-type transpo 100.0 3.6E-35 7.8E-40 266.5 1.9 204 72-321 6-217 (263)
10 COG3638 ABC-type phosphate/pho 100.0 8.3E-35 1.8E-39 263.5 0.3 205 74-324 3-222 (258)
11 COG3842 PotA ABC-type spermidi 100.0 1.4E-34 3E-39 281.0 -0.1 201 73-324 4-211 (352)
12 COG3839 MalK ABC-type sugar tr 100.0 2.5E-34 5.5E-39 277.8 0.8 198 74-321 3-205 (338)
13 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.7E-34 5.9E-39 266.7 -1.7 194 74-321 4-210 (254)
14 COG1124 DppF ABC-type dipeptid 100.0 2.4E-33 5.3E-38 255.5 1.4 206 73-323 2-215 (252)
15 COG2884 FtsE Predicted ATPase 100.0 2.2E-33 4.8E-38 246.3 -1.0 192 86-319 9-206 (223)
16 COG0411 LivG ABC-type branched 100.0 6.5E-34 1.4E-38 259.4 -5.2 202 73-321 3-221 (250)
17 COG1118 CysA ABC-type sulfate/ 100.0 1.5E-32 3.2E-37 257.1 0.0 195 86-323 10-211 (345)
18 COG1137 YhbG ABC-type (unclass 100.0 2.6E-33 5.7E-38 247.5 -5.3 200 74-321 4-210 (243)
19 COG0410 LivF ABC-type branched 100.0 3.6E-32 7.7E-37 246.3 0.8 201 73-321 2-208 (237)
20 COG4555 NatA ABC-type Na+ tran 100.0 2.5E-33 5.5E-38 247.9 -6.6 201 74-323 1-206 (245)
21 COG1122 CbiO ABC-type cobalt t 100.0 2.8E-32 6.1E-37 253.5 -0.0 194 86-323 11-212 (235)
22 COG1131 CcmA ABC-type multidru 100.0 1.8E-32 3.9E-37 264.1 -3.1 196 75-320 5-207 (293)
23 COG4175 ProV ABC-type proline/ 100.0 3E-32 6.5E-37 255.5 -1.6 188 100-320 42-235 (386)
24 PRK13537 nodulation ABC transp 100.0 2.3E-32 4.9E-37 265.2 -3.0 198 73-320 6-208 (306)
25 TIGR02314 ABC_MetN D-methionin 100.0 3E-32 6.6E-37 267.4 -3.0 202 75-321 2-212 (343)
26 COG4181 Predicted ABC-type tra 100.0 3.4E-31 7.5E-36 228.8 1.3 187 101-321 25-217 (228)
27 PRK13536 nodulation factor exp 100.0 1.1E-31 2.3E-36 263.7 -2.3 198 74-321 41-243 (340)
28 PRK11432 fbpC ferric transport 100.0 1.3E-31 2.8E-36 264.1 -1.7 198 74-322 6-209 (351)
29 TIGR00960 3a0501s02 Type II (G 100.0 9.7E-32 2.1E-36 248.0 -2.5 199 75-320 2-208 (216)
30 PRK11650 ugpC glycerol-3-phosp 100.0 8E-32 1.7E-36 266.1 -3.5 198 74-321 3-206 (356)
31 PRK09452 potA putrescine/sperm 100.0 1.7E-31 3.6E-36 265.2 -2.3 199 73-321 13-216 (375)
32 TIGR03265 PhnT2 putative 2-ami 100.0 2E-31 4.3E-36 263.1 -2.4 198 74-321 4-206 (353)
33 cd03261 ABC_Org_Solvent_Resist 100.0 2E-31 4.3E-36 249.0 -3.1 201 77-323 3-210 (235)
34 PRK11607 potG putrescine trans 100.0 4.8E-31 1E-35 262.2 -0.9 199 73-321 18-221 (377)
35 COG4152 ABC-type uncharacteriz 100.0 3.2E-31 6.9E-36 240.8 -2.1 198 74-324 2-204 (300)
36 TIGR01186 proV glycine betaine 100.0 1.4E-31 3E-36 264.4 -5.7 194 86-321 1-201 (363)
37 TIGR03258 PhnT 2-aminoethylpho 100.0 4.4E-31 9.5E-36 261.2 -2.4 200 74-323 5-212 (362)
38 TIGR02673 FtsE cell division A 100.0 2.6E-31 5.7E-36 244.6 -3.8 199 75-320 2-207 (214)
39 PRK11153 metN DL-methionine tr 100.0 3.2E-31 7E-36 261.0 -3.5 202 75-321 2-212 (343)
40 TIGR01288 nodI ATP-binding ABC 100.0 5.5E-31 1.2E-35 255.3 -3.0 197 74-321 4-206 (303)
41 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 5.1E-31 1.1E-35 243.4 -3.3 197 77-320 3-210 (218)
42 PRK11000 maltose/maltodextrin 100.0 7.9E-31 1.7E-35 260.5 -2.2 200 74-323 3-207 (369)
43 PRK10851 sulfate/thiosulfate t 100.0 9.4E-31 2E-35 258.2 -1.7 197 75-321 3-208 (353)
44 COG4525 TauB ABC-type taurine 100.0 2.5E-30 5.4E-35 227.8 0.5 196 74-320 3-203 (259)
45 cd03259 ABC_Carb_Solutes_like 100.0 7.5E-31 1.6E-35 241.5 -3.9 193 77-320 3-201 (213)
46 cd03218 ABC_YhbG The ABC trans 100.0 1.2E-30 2.6E-35 243.2 -2.9 198 77-323 3-206 (232)
47 PRK09536 btuD corrinoid ABC tr 100.0 2.3E-30 5.1E-35 258.6 -1.0 198 74-321 3-210 (402)
48 COG4598 HisP ABC-type histidin 100.0 4.4E-31 9.5E-36 229.8 -5.5 204 73-323 5-225 (256)
49 TIGR02315 ABC_phnC phosphonate 100.0 2.3E-30 5E-35 242.9 -1.1 203 75-323 2-219 (243)
50 cd03265 ABC_DrrA DrrA is the A 100.0 9.5E-31 2.1E-35 242.1 -3.8 196 76-321 2-203 (220)
51 COG3840 ThiQ ABC-type thiamine 100.0 5E-30 1.1E-34 223.7 0.9 193 76-321 3-201 (231)
52 TIGR01188 drrA daunorubicin re 100.0 7.3E-31 1.6E-35 254.4 -5.1 188 86-320 1-194 (302)
53 cd03219 ABC_Mj1267_LivG_branch 100.0 1.5E-30 3.4E-35 243.0 -2.7 198 77-323 3-216 (236)
54 PRK10908 cell division protein 100.0 1.8E-30 3.8E-35 240.7 -2.8 199 75-320 2-207 (222)
55 cd03292 ABC_FtsE_transporter F 100.0 1.2E-30 2.6E-35 240.1 -4.1 197 77-320 3-206 (214)
56 PRK10070 glycine betaine trans 100.0 1.8E-30 3.9E-35 259.3 -3.3 187 101-321 43-236 (400)
57 cd03296 ABC_CysA_sulfate_impor 100.0 2.7E-30 5.8E-35 242.1 -2.0 198 75-323 3-210 (239)
58 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.4E-30 3E-35 241.0 -4.0 191 76-320 2-202 (220)
59 cd03256 ABC_PhnC_transporter A 100.0 3E-30 6.5E-35 241.7 -1.8 202 76-323 2-218 (241)
60 cd03258 ABC_MetN_methionine_tr 100.0 1.8E-30 3.9E-35 242.2 -3.6 201 75-321 2-212 (233)
61 COG4559 ABC-type hemin transpo 100.0 7.9E-30 1.7E-34 227.4 0.7 205 76-323 3-214 (259)
62 cd03266 ABC_NatA_sodium_export 100.0 1.8E-30 4E-35 239.7 -3.7 195 75-320 2-206 (218)
63 cd03269 ABC_putative_ATPase Th 100.0 2E-30 4.3E-35 238.2 -3.5 191 77-320 3-198 (210)
64 PRK11831 putative ABC transpor 100.0 2.7E-30 5.9E-35 246.4 -2.8 204 74-323 7-217 (269)
65 PRK15079 oligopeptide ABC tran 100.0 2.1E-30 4.6E-35 253.7 -3.6 211 73-321 7-233 (331)
66 TIGR03522 GldA_ABC_ATP gliding 100.0 2.9E-30 6.2E-35 250.1 -3.4 195 75-321 3-203 (301)
67 cd03301 ABC_MalK_N The N-termi 100.0 2.8E-30 6E-35 237.7 -3.4 194 77-320 3-201 (213)
68 cd03226 ABC_cobalt_CbiO_domain 99.9 5.6E-30 1.2E-34 234.4 -1.8 183 86-320 7-196 (205)
69 PRK11629 lolD lipoprotein tran 99.9 6E-30 1.3E-34 238.8 -1.6 198 73-316 4-212 (233)
70 PRK10584 putative ABC transpor 99.9 4E-30 8.7E-35 239.1 -2.9 201 73-320 5-216 (228)
71 cd03224 ABC_TM1139_LivF_branch 99.9 3.6E-30 7.7E-35 238.3 -3.3 197 77-323 3-205 (222)
72 cd03225 ABC_cobalt_CbiO_domain 99.9 4.1E-30 8.9E-35 236.2 -3.1 190 86-320 7-204 (211)
73 PRK13637 cbiO cobalt transport 99.9 5.5E-30 1.2E-34 246.5 -2.6 208 75-323 3-218 (287)
74 cd03268 ABC_BcrA_bacitracin_re 99.9 4.7E-30 1E-34 235.3 -2.9 190 76-320 2-196 (208)
75 cd03262 ABC_HisP_GlnQ_permease 99.9 5.3E-30 1.1E-34 235.7 -3.0 196 77-320 3-205 (213)
76 TIGR02211 LolD_lipo_ex lipopro 99.9 5.9E-30 1.3E-34 236.8 -2.8 199 75-320 2-211 (221)
77 PRK11248 tauB taurine transpor 99.9 6E-30 1.3E-34 242.2 -3.1 195 75-323 2-202 (255)
78 TIGR03415 ABC_choXWV_ATP choli 99.9 3E-30 6.6E-35 256.0 -6.0 194 86-320 32-235 (382)
79 cd03257 ABC_NikE_OppD_transpor 99.9 9.2E-30 2E-34 236.4 -2.6 202 75-321 2-217 (228)
80 PRK13647 cbiO cobalt transport 99.9 8.9E-30 1.9E-34 243.5 -2.8 199 74-321 4-209 (274)
81 cd03263 ABC_subfamily_A The AB 99.9 5.7E-30 1.2E-34 236.7 -4.1 193 77-321 3-203 (220)
82 PRK13638 cbiO cobalt transport 99.9 9.2E-30 2E-34 243.0 -3.1 199 75-321 2-207 (271)
83 PRK10895 lipopolysaccharide AB 99.9 1.2E-29 2.5E-34 238.0 -2.4 202 74-323 3-210 (241)
84 PRK11308 dppF dipeptide transp 99.9 9.9E-30 2.2E-34 248.7 -3.2 211 73-322 4-227 (327)
85 PRK13548 hmuV hemin importer A 99.9 2.1E-29 4.5E-34 238.9 -0.9 201 74-323 2-214 (258)
86 PRK11247 ssuB aliphatic sulfon 99.9 1.7E-29 3.7E-34 239.3 -1.6 192 73-323 11-207 (257)
87 PRK09493 glnQ glutamine ABC tr 99.9 1.2E-29 2.6E-34 237.8 -2.8 201 75-322 2-208 (240)
88 cd03295 ABC_OpuCA_Osmoprotecti 99.9 1.2E-29 2.7E-34 238.0 -2.8 198 77-323 3-209 (242)
89 cd03264 ABC_drug_resistance_li 99.9 7.9E-30 1.7E-34 234.4 -4.3 191 77-320 3-199 (211)
90 cd03235 ABC_Metallic_Cations A 99.9 1.4E-29 3E-34 233.1 -2.8 185 86-321 7-203 (213)
91 cd03294 ABC_Pro_Gly_Bertaine T 99.9 4.5E-30 9.8E-35 244.9 -6.5 195 86-322 32-233 (269)
92 PRK13651 cobalt transporter AT 99.9 1.8E-29 3.9E-34 244.7 -2.6 207 75-322 3-237 (305)
93 PRK11022 dppD dipeptide transp 99.9 1E-29 2.2E-34 248.6 -4.4 207 74-321 3-225 (326)
94 PRK13636 cbiO cobalt transport 99.9 1.9E-29 4.2E-34 242.2 -2.5 201 74-321 5-213 (283)
95 cd03298 ABC_ThiQ_thiamine_tran 99.9 2.9E-29 6.3E-34 230.6 -1.6 191 77-320 3-199 (211)
96 COG1129 MglA ABC-type sugar tr 99.9 3.7E-29 7.9E-34 251.4 -1.0 201 73-321 7-216 (500)
97 PRK11264 putative amino-acid A 99.9 2.4E-29 5.3E-34 237.0 -2.1 203 74-323 3-217 (250)
98 PRK11300 livG leucine/isoleuci 99.9 2.7E-29 5.8E-34 237.4 -2.0 202 74-323 5-227 (255)
99 COG1123 ATPase components of v 99.9 6E-29 1.3E-33 251.5 0.4 211 71-321 277-501 (539)
100 PRK10762 D-ribose transporter 99.9 4.1E-29 9E-34 258.0 -1.0 202 73-323 3-214 (501)
101 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.8E-29 3.9E-34 236.0 -3.5 199 75-323 2-205 (236)
102 PRK13634 cbiO cobalt transport 99.9 1.8E-29 3.9E-34 243.3 -3.6 208 75-322 3-218 (290)
103 PRK09473 oppD oligopeptide tra 99.9 2.2E-29 4.8E-34 246.5 -3.2 203 73-321 11-233 (330)
104 TIGR03410 urea_trans_UrtE urea 99.9 1.8E-29 3.8E-34 235.1 -3.8 198 76-323 2-205 (230)
105 PRK10619 histidine/lysine/argi 99.9 3.5E-29 7.6E-34 237.1 -1.9 203 74-323 5-225 (257)
106 PRK15439 autoinducer 2 ABC tra 99.9 6.4E-29 1.4E-33 257.1 -0.2 199 73-323 10-213 (510)
107 TIGR02324 CP_lyasePhnL phospho 99.9 3.6E-29 7.8E-34 232.1 -2.0 187 102-322 24-221 (224)
108 PRK13650 cbiO cobalt transport 99.9 3.2E-29 6.8E-34 240.3 -2.5 200 74-320 4-210 (279)
109 PRK13646 cbiO cobalt transport 99.9 2.6E-29 5.5E-34 241.7 -3.1 208 75-323 3-219 (286)
110 TIGR03608 L_ocin_972_ABC putat 99.9 1.2E-29 2.7E-34 232.1 -5.2 191 86-320 6-203 (206)
111 PRK10575 iron-hydroxamate tran 99.9 5E-29 1.1E-33 237.2 -1.3 202 73-323 10-221 (265)
112 TIGR03411 urea_trans_UrtD urea 99.9 3.5E-29 7.6E-34 234.8 -2.4 200 74-323 2-215 (242)
113 PRK11124 artP arginine transpo 99.9 3.5E-29 7.7E-34 234.9 -2.5 201 75-321 3-212 (242)
114 cd03229 ABC_Class3 This class 99.9 4.6E-28 1E-32 217.1 4.8 164 77-320 3-171 (178)
115 PRK13631 cbiO cobalt transport 99.9 5.5E-29 1.2E-33 242.8 -1.3 208 73-322 20-248 (320)
116 cd03260 ABC_PstB_phosphate_tra 99.9 3.7E-29 7.9E-34 232.5 -2.9 196 76-320 2-210 (227)
117 TIGR00972 3a0107s01c2 phosphat 99.9 4.9E-29 1.1E-33 234.7 -2.1 199 75-322 2-215 (247)
118 PRK13641 cbiO cobalt transport 99.9 2.8E-29 6.2E-34 241.5 -3.9 188 102-323 23-218 (287)
119 PRK11231 fecE iron-dicitrate t 99.9 6.9E-29 1.5E-33 234.8 -1.3 199 75-323 3-211 (255)
120 PRK13543 cytochrome c biogenes 99.9 7.5E-29 1.6E-33 228.7 -1.2 194 73-321 10-208 (214)
121 PRK13549 xylose transporter AT 99.9 8.2E-29 1.8E-33 256.1 -1.1 202 73-322 4-215 (506)
122 PRK13635 cbiO cobalt transport 99.9 5E-29 1.1E-33 238.9 -2.8 198 74-320 5-210 (279)
123 PRK09984 phosphonate/organopho 99.9 8.5E-29 1.8E-33 235.1 -1.2 207 73-323 3-226 (262)
124 PRK10247 putative ABC transpor 99.9 4.1E-29 9E-34 232.1 -3.3 207 73-331 6-218 (225)
125 PRK13643 cbiO cobalt transport 99.9 5.5E-29 1.2E-33 239.6 -2.6 205 75-321 2-215 (288)
126 PRK10253 iron-enterobactin tra 99.9 1.1E-28 2.4E-33 234.8 -0.7 202 74-323 7-217 (265)
127 TIGR02769 nickel_nikE nickel i 99.9 7.2E-29 1.6E-33 236.1 -2.0 188 102-323 27-224 (265)
128 PRK11614 livF leucine/isoleuci 99.9 4E-29 8.6E-34 233.8 -3.9 200 74-323 5-210 (237)
129 PRK09700 D-allose transporter 99.9 1.2E-28 2.5E-33 255.2 -0.9 201 73-322 4-217 (510)
130 cd03230 ABC_DR_subfamily_A Thi 99.9 4.1E-28 9E-33 216.4 2.8 158 77-320 3-165 (173)
131 PRK13644 cbiO cobalt transport 99.9 5.1E-29 1.1E-33 238.2 -3.4 198 75-322 2-207 (274)
132 PRK14250 phosphate ABC transpo 99.9 1.3E-28 2.9E-33 231.0 -0.7 196 75-323 4-205 (241)
133 PRK15093 antimicrobial peptide 99.9 5.1E-29 1.1E-33 244.2 -3.8 203 74-321 3-230 (330)
134 COG0444 DppD ABC-type dipeptid 99.9 6.4E-29 1.4E-33 235.7 -3.0 187 101-320 20-224 (316)
135 PRK14242 phosphate transporter 99.9 9.3E-29 2E-33 233.5 -2.3 202 73-323 5-221 (253)
136 PRK13652 cbiO cobalt transport 99.9 1.1E-28 2.3E-33 236.4 -2.3 201 74-322 3-210 (277)
137 PRK14259 phosphate ABC transpo 99.9 2.1E-28 4.5E-33 233.5 -0.5 203 73-324 12-227 (269)
138 TIGR03005 ectoine_ehuA ectoine 99.9 8.1E-29 1.8E-33 233.9 -3.3 200 76-321 2-218 (252)
139 PRK15112 antimicrobial peptide 99.9 9.5E-29 2.1E-33 235.5 -3.0 210 73-323 3-223 (267)
140 TIGR01978 sufC FeS assembly AT 99.9 8.1E-29 1.7E-33 232.3 -3.4 198 76-321 2-216 (243)
141 PRK13633 cobalt transporter AT 99.9 1.1E-28 2.4E-33 236.7 -2.6 209 73-323 3-217 (280)
142 PRK11144 modC molybdate transp 99.9 1.5E-28 3.2E-33 242.9 -1.8 189 86-323 8-202 (352)
143 PRK14268 phosphate ABC transpo 99.9 9.6E-29 2.1E-33 234.3 -3.0 202 73-323 11-226 (258)
144 PRK13639 cbiO cobalt transport 99.9 8.8E-29 1.9E-33 236.7 -3.3 202 75-323 2-210 (275)
145 COG4604 CeuD ABC-type enteroch 99.9 4E-29 8.6E-34 220.6 -5.5 202 75-325 2-211 (252)
146 COG4161 ArtP ABC-type arginine 99.9 1.6E-28 3.5E-33 210.4 -1.6 198 80-322 5-213 (242)
147 PRK13538 cytochrome c biogenes 99.9 1.5E-28 3.2E-33 225.0 -2.2 189 75-316 2-195 (204)
148 PRK14254 phosphate ABC transpo 99.9 2.5E-28 5.3E-33 234.8 -0.7 201 71-320 36-249 (285)
149 cd03231 ABC_CcmA_heme_exporter 99.9 1.6E-28 3.4E-33 224.4 -2.2 189 76-320 2-195 (201)
150 PRK14235 phosphate transporter 99.9 1.8E-28 3.9E-33 233.6 -1.9 203 71-322 16-234 (267)
151 TIGR03873 F420-0_ABC_ATP propo 99.9 2.2E-28 4.7E-33 231.5 -1.5 199 75-323 2-210 (256)
152 cd03216 ABC_Carb_Monos_I This 99.9 1.8E-27 3.8E-32 210.5 4.4 146 76-320 2-152 (163)
153 TIGR01166 cbiO cobalt transpor 99.9 5.6E-29 1.2E-33 225.2 -5.4 175 102-312 8-189 (190)
154 TIGR03740 galliderm_ABC gallid 99.9 1.1E-28 2.4E-33 228.8 -3.6 191 76-323 2-197 (223)
155 PRK14275 phosphate ABC transpo 99.9 2.9E-28 6.4E-33 234.4 -0.8 222 52-323 18-254 (286)
156 PRK14267 phosphate ABC transpo 99.9 1.6E-28 3.6E-33 231.8 -2.6 201 74-322 4-220 (253)
157 PRK10771 thiQ thiamine transpo 99.9 2.5E-28 5.5E-33 227.7 -1.5 196 75-323 2-203 (232)
158 PRK11288 araG L-arabinose tran 99.9 3E-28 6.6E-33 251.6 -1.5 201 73-322 3-212 (501)
159 TIGR02142 modC_ABC molybdenum 99.9 2E-28 4.3E-33 242.2 -2.7 193 86-323 7-205 (354)
160 PRK11701 phnK phosphonate C-P 99.9 2.8E-28 6.1E-33 231.0 -1.8 204 74-323 6-225 (258)
161 PRK10744 pstB phosphate transp 99.9 3.1E-28 6.7E-33 231.1 -1.6 200 74-322 13-227 (260)
162 PRK10261 glutathione transport 99.9 2E-28 4.3E-33 258.9 -3.3 213 73-323 312-537 (623)
163 PRK14241 phosphate transporter 99.9 2.3E-28 5E-33 231.6 -2.6 203 74-323 4-220 (258)
164 TIGR02982 heterocyst_DevA ABC 99.9 1.5E-28 3.3E-33 227.4 -3.9 200 75-320 2-211 (220)
165 PRK14273 phosphate ABC transpo 99.9 3E-28 6.6E-33 230.2 -2.0 200 74-322 7-221 (254)
166 COG3845 ABC-type uncharacteriz 99.9 1.2E-27 2.7E-32 236.4 2.3 199 73-320 3-210 (501)
167 PRK13632 cbiO cobalt transport 99.9 1.7E-28 3.7E-33 234.3 -3.8 199 73-320 6-212 (271)
168 PRK13649 cbiO cobalt transport 99.9 2.4E-28 5.1E-33 234.3 -3.0 205 75-321 3-216 (280)
169 PRK14247 phosphate ABC transpo 99.9 3.4E-28 7.4E-33 229.3 -1.9 200 74-323 3-218 (250)
170 PRK13539 cytochrome c biogenes 99.9 3.5E-28 7.6E-33 223.1 -1.9 185 75-315 3-192 (207)
171 PRK13547 hmuV hemin importer A 99.9 5E-28 1.1E-32 231.1 -0.9 200 75-323 2-228 (272)
172 PRK13640 cbiO cobalt transport 99.9 2.8E-28 6.1E-33 234.1 -2.6 199 74-321 5-214 (282)
173 PRK13648 cbiO cobalt transport 99.9 3.1E-28 6.7E-33 232.2 -2.5 199 73-321 6-213 (269)
174 PRK14248 phosphate ABC transpo 99.9 4E-28 8.6E-33 231.3 -1.9 202 73-323 20-236 (268)
175 PRK13645 cbiO cobalt transport 99.9 2.7E-28 6E-33 234.9 -3.4 206 74-320 6-221 (289)
176 PRK10261 glutathione transport 99.9 3.9E-28 8.6E-33 256.6 -2.6 205 73-323 11-242 (623)
177 TIGR02323 CP_lyasePhnK phospho 99.9 4.9E-28 1.1E-32 228.6 -1.9 202 74-323 3-222 (253)
178 PRK14243 phosphate transporter 99.9 5.6E-28 1.2E-32 229.8 -1.7 202 73-323 9-223 (264)
179 PRK15134 microcin C ABC transp 99.9 3.8E-28 8.3E-33 252.4 -3.1 204 73-322 4-229 (529)
180 TIGR03269 met_CoM_red_A2 methy 99.9 5.8E-28 1.2E-32 250.6 -1.8 203 76-323 2-242 (520)
181 PRK15056 manganese/iron transp 99.9 1.6E-27 3.5E-32 227.6 1.2 195 74-321 6-213 (272)
182 TIGR02633 xylG D-xylose ABC tr 99.9 6.1E-28 1.3E-32 249.3 -2.0 200 75-323 2-214 (500)
183 PRK13642 cbiO cobalt transport 99.9 4.4E-28 9.5E-33 232.2 -2.9 202 74-322 4-212 (277)
184 PRK14270 phosphate ABC transpo 99.9 7.8E-28 1.7E-32 227.0 -1.3 203 73-323 3-219 (251)
185 PRK09544 znuC high-affinity zi 99.9 1.3E-27 2.7E-32 225.8 0.2 184 74-323 4-194 (251)
186 PRK10982 galactose/methyl gala 99.9 6.1E-28 1.3E-32 248.7 -2.3 193 86-323 6-207 (491)
187 cd03215 ABC_Carb_Monos_II This 99.9 2.1E-27 4.6E-32 213.6 1.4 164 74-321 4-175 (182)
188 TIGR01277 thiQ thiamine ABC tr 99.9 4.2E-28 9.1E-33 223.4 -3.3 178 104-320 16-199 (213)
189 PRK13540 cytochrome c biogenes 99.9 1.3E-27 2.8E-32 218.1 -0.0 186 75-315 2-192 (200)
190 cd03246 ABCC_Protease_Secretio 99.9 4.3E-27 9.4E-32 209.9 3.2 143 102-320 18-165 (173)
191 PRK14256 phosphate ABC transpo 99.9 9.3E-28 2E-32 226.6 -1.2 202 74-323 4-220 (252)
192 cd03267 ABC_NatA_like Similar 99.9 2E-28 4.3E-33 229.2 -6.0 189 86-320 29-224 (236)
193 cd03300 ABC_PotA_N PotA is an 99.9 5E-28 1.1E-32 225.8 -3.4 196 77-322 3-203 (232)
194 PRK10419 nikE nickel transport 99.9 6.5E-28 1.4E-32 229.9 -2.7 189 102-323 28-225 (268)
195 PRK10418 nikD nickel transport 99.9 8.1E-28 1.7E-32 227.4 -2.1 195 74-321 4-212 (254)
196 cd03217 ABC_FeS_Assembly ABC-t 99.9 3.1E-27 6.7E-32 215.7 1.8 168 76-321 2-176 (200)
197 PRK14265 phosphate ABC transpo 99.9 1.1E-27 2.5E-32 228.9 -1.3 203 73-324 19-234 (274)
198 COG1123 ATPase components of v 99.9 1.1E-27 2.4E-32 242.3 -1.5 208 73-321 4-226 (539)
199 PRK14249 phosphate ABC transpo 99.9 1.4E-27 2.9E-32 225.4 -1.3 201 73-323 3-219 (251)
200 PRK15134 microcin C ABC transp 99.9 6.4E-28 1.4E-32 250.8 -3.8 204 73-323 274-499 (529)
201 PRK14274 phosphate ABC transpo 99.9 1.2E-27 2.6E-32 226.9 -1.8 203 73-323 11-227 (259)
202 TIGR00968 3a0106s01 sulfate AB 99.9 6.3E-28 1.4E-32 225.9 -3.6 196 77-323 3-204 (237)
203 cd03297 ABC_ModC_molybdenum_tr 99.9 6.4E-28 1.4E-32 222.3 -3.8 192 79-320 5-202 (214)
204 PRK14238 phosphate transporter 99.9 1.2E-27 2.5E-32 228.5 -2.3 201 73-322 23-238 (271)
205 TIGR01189 ccmA heme ABC export 99.9 1.2E-27 2.7E-32 217.8 -2.1 183 76-312 2-189 (198)
206 COG4674 Uncharacterized ABC-ty 99.9 7.6E-28 1.6E-32 212.2 -3.4 198 73-320 4-216 (249)
207 cd03214 ABC_Iron-Siderophores_ 99.9 3.6E-27 7.7E-32 211.7 0.8 158 86-321 7-169 (180)
208 PRK14245 phosphate ABC transpo 99.9 1.3E-27 2.9E-32 225.3 -2.1 202 73-323 2-218 (250)
209 PRK14269 phosphate ABC transpo 99.9 2E-27 4.3E-32 223.7 -1.3 197 76-323 4-214 (246)
210 COG4148 ModC ABC-type molybdat 99.9 6E-27 1.3E-31 216.6 1.7 180 104-322 16-201 (352)
211 PRK14240 phosphate transporter 99.9 1.6E-27 3.5E-32 224.7 -2.5 201 74-323 3-218 (250)
212 cd03233 ABC_PDR_domain1 The pl 99.9 9.9E-27 2.1E-31 212.7 2.8 159 102-320 23-190 (202)
213 cd03228 ABCC_MRP_Like The MRP 99.9 7E-27 1.5E-31 208.1 1.8 155 77-320 3-164 (171)
214 PRK13549 xylose transporter AT 99.9 2.4E-27 5.1E-32 245.2 -1.7 203 73-323 258-478 (506)
215 PRK14258 phosphate ABC transpo 99.9 2.2E-27 4.8E-32 225.4 -1.8 203 74-324 7-225 (261)
216 TIGR02770 nickel_nikD nickel i 99.9 6.7E-28 1.4E-32 224.7 -5.3 184 101-323 1-199 (230)
217 TIGR01184 ntrCD nitrate transp 99.9 5.7E-28 1.2E-32 225.2 -5.9 181 102-323 1-188 (230)
218 PRK14239 phosphate transporter 99.9 2.2E-27 4.7E-32 224.0 -2.0 201 74-323 5-220 (252)
219 PRK09700 D-allose transporter 99.9 4.2E-27 9.1E-32 243.6 -0.2 185 102-323 279-482 (510)
220 PRK14262 phosphate ABC transpo 99.9 2.3E-27 5E-32 223.7 -2.0 200 74-322 3-217 (250)
221 PRK14271 phosphate ABC transpo 99.9 3.2E-27 7E-32 226.0 -1.1 202 73-323 20-235 (276)
222 PRK14237 phosphate transporter 99.9 3.2E-27 7E-32 225.0 -1.1 200 74-322 20-234 (267)
223 PRK14261 phosphate ABC transpo 99.9 2.8E-27 6E-32 223.5 -1.6 201 73-322 5-220 (253)
224 PRK14260 phosphate ABC transpo 99.9 2.1E-27 4.6E-32 225.2 -2.4 201 74-323 7-222 (259)
225 TIGR03269 met_CoM_red_A2 methy 99.9 2E-27 4.3E-32 246.6 -3.0 204 73-323 278-501 (520)
226 PRK14236 phosphate transporter 99.9 3.6E-27 7.7E-32 225.3 -1.0 202 73-323 24-240 (272)
227 PRK14251 phosphate ABC transpo 99.9 2.5E-27 5.4E-32 223.6 -2.3 200 74-322 4-218 (251)
228 PRK09580 sufC cysteine desulfu 99.9 6.7E-27 1.4E-31 220.1 0.6 199 75-320 2-216 (248)
229 cd03299 ABC_ModC_like Archeal 99.9 1.6E-27 3.4E-32 222.9 -3.7 196 77-323 3-203 (235)
230 CHL00131 ycf16 sulfate ABC tra 99.9 3E-27 6.4E-32 223.1 -1.9 201 73-321 6-223 (252)
231 TIGR02633 xylG D-xylose ABC tr 99.9 3.4E-27 7.4E-32 243.8 -1.7 186 102-323 276-476 (500)
232 cd03247 ABCC_cytochrome_bd The 99.9 1.5E-26 3.3E-31 207.2 2.8 152 86-320 8-166 (178)
233 PRK10938 putative molybdenum t 99.9 6.2E-27 1.3E-31 241.2 0.2 192 75-323 4-208 (490)
234 cd03232 ABC_PDR_domain2 The pl 99.9 7.3E-27 1.6E-31 211.9 0.6 166 74-320 3-179 (192)
235 COG1196 Smc Chromosome segrega 99.9 3.7E-23 8E-28 232.0 29.8 249 75-387 1-279 (1163)
236 cd03245 ABCC_bacteriocin_expor 99.9 2.9E-27 6.2E-32 218.7 -2.8 189 75-321 3-209 (220)
237 PRK14246 phosphate ABC transpo 99.9 2.2E-27 4.8E-32 224.9 -3.8 202 73-323 9-225 (257)
238 PRK14252 phosphate ABC transpo 99.9 8.2E-27 1.8E-31 221.9 -0.4 205 71-323 13-233 (265)
239 cd03213 ABCG_EPDR ABCG transpo 99.9 1.2E-26 2.5E-31 210.9 0.4 167 74-320 3-182 (194)
240 cd03251 ABCC_MsbA MsbA is an e 99.9 4.1E-27 8.9E-32 219.6 -2.7 194 76-323 2-209 (234)
241 PRK14255 phosphate ABC transpo 99.9 4.4E-27 9.6E-32 222.0 -2.7 201 74-323 5-220 (252)
242 cd03369 ABCC_NFT1 Domain 2 of 99.9 2E-26 4.4E-31 211.2 1.8 182 73-320 5-193 (207)
243 PRK14253 phosphate ABC transpo 99.9 5E-27 1.1E-31 221.2 -2.3 200 74-323 3-217 (249)
244 cd03248 ABCC_TAP TAP, the Tran 99.9 8E-27 1.7E-31 216.6 -0.9 197 72-320 9-218 (226)
245 PRK14272 phosphate ABC transpo 99.9 5.1E-27 1.1E-31 221.4 -2.4 202 75-323 5-220 (252)
246 PRK14244 phosphate ABC transpo 99.9 5.2E-27 1.1E-31 221.4 -2.7 192 86-321 13-219 (251)
247 PRK13541 cytochrome c biogenes 99.9 5.8E-27 1.3E-31 213.0 -2.6 182 75-315 2-188 (195)
248 PRK14264 phosphate ABC transpo 99.9 2.6E-26 5.7E-31 222.8 1.4 198 74-320 45-269 (305)
249 PRK10938 putative molybdenum t 99.9 8.8E-27 1.9E-31 240.1 -2.3 202 72-321 258-474 (490)
250 PRK11147 ABC transporter ATPas 99.9 6.6E-26 1.4E-30 240.3 3.8 182 73-319 318-506 (635)
251 PRK14263 phosphate ABC transpo 99.9 1.7E-26 3.7E-31 219.3 -1.1 202 73-323 7-221 (261)
252 cd03252 ABCC_Hemolysin The ABC 99.9 1.2E-26 2.7E-31 216.9 -2.6 179 102-322 18-208 (237)
253 COG4619 ABC-type uncharacteriz 99.9 3.6E-26 7.9E-31 197.1 0.5 182 102-322 19-206 (223)
254 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 9.3E-27 2E-31 217.9 -3.5 180 102-323 19-210 (238)
255 PRK14266 phosphate ABC transpo 99.9 1.5E-26 3.4E-31 218.0 -2.1 199 75-321 4-216 (250)
256 cd03254 ABCC_Glucan_exporter_l 99.9 9.4E-27 2E-31 216.5 -3.7 192 75-320 3-207 (229)
257 PRK10636 putative ABC transpor 99.9 6.4E-25 1.4E-29 232.6 9.5 178 73-319 311-496 (638)
258 cd03234 ABCG_White The White s 99.9 1.2E-26 2.6E-31 215.6 -3.3 179 102-320 23-214 (226)
259 COG4608 AppF ABC-type oligopep 99.9 7E-26 1.5E-30 210.7 1.7 170 74-320 4-180 (268)
260 PRK03695 vitamin B12-transport 99.9 9.5E-27 2E-31 219.4 -4.3 189 102-323 12-206 (248)
261 TIGR01257 rim_protein retinal- 99.9 2E-26 4.3E-31 263.5 -2.8 199 73-321 1936-2141(2272)
262 PRK11288 araG L-arabinose tran 99.9 1.7E-26 3.6E-31 238.6 -3.1 185 102-323 269-469 (501)
263 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 4.1E-27 8.9E-32 218.6 -7.5 185 75-320 23-212 (224)
264 PRK14257 phosphate ABC transpo 99.9 3.1E-26 6.7E-31 224.2 -1.8 203 73-323 79-297 (329)
265 cd03250 ABCC_MRP_domain1 Domai 99.9 2.6E-26 5.7E-31 210.0 -2.5 179 76-320 2-197 (204)
266 cd03222 ABC_RNaseL_inhibitor T 99.9 1.9E-25 4.1E-30 199.8 3.1 130 86-320 8-142 (177)
267 COG1119 ModF ABC-type molybden 99.9 2.2E-25 4.9E-30 203.6 3.4 197 74-318 31-241 (257)
268 cd03223 ABCD_peroxisomal_ALDP 99.9 2.4E-25 5.2E-30 197.4 3.3 149 77-320 3-157 (166)
269 PRK10762 D-ribose transporter 99.9 2.5E-26 5.5E-31 237.3 -3.6 185 102-323 268-468 (501)
270 PRK15439 autoinducer 2 ABC tra 99.9 3.2E-26 7E-31 237.0 -2.8 185 102-323 279-476 (510)
271 cd03253 ABCC_ATM1_transporter 99.9 4.7E-26 1E-30 212.7 -1.9 193 77-323 3-208 (236)
272 PRK10982 galactose/methyl gala 99.9 1.3E-25 2.9E-30 231.4 0.5 186 102-323 264-464 (491)
273 cd03237 ABC_RNaseL_inhibitor_d 99.9 3.7E-26 8E-31 215.1 -3.9 160 134-323 25-189 (246)
274 cd03244 ABCC_MRP_domain2 Domai 99.9 6E-26 1.3E-30 210.0 -2.7 192 75-320 3-207 (221)
275 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 7.8E-25 1.7E-29 189.7 4.2 130 77-320 3-137 (144)
276 TIGR01257 rim_protein retinal- 99.9 6.2E-26 1.3E-30 259.4 -3.5 196 73-320 927-1130(2272)
277 cd03274 ABC_SMC4_euk Eukaryoti 99.9 1.8E-24 3.8E-29 199.3 6.2 184 75-320 1-199 (212)
278 PRK15064 ABC transporter ATP-b 99.9 1.8E-25 4E-30 232.4 -0.9 182 75-320 2-222 (530)
279 PRK11819 putative ABC transpor 99.9 1.7E-25 3.8E-30 233.8 -1.1 182 74-320 6-230 (556)
280 PRK13545 tagH teichoic acids e 99.9 1.1E-25 2.4E-30 228.6 -3.0 190 73-321 20-214 (549)
281 PRK13409 putative ATPase RIL; 99.9 1.6E-25 3.5E-30 234.4 -2.2 184 73-323 339-527 (590)
282 PRK13546 teichoic acids export 99.9 1.6E-25 3.4E-30 213.0 -2.2 173 99-321 37-214 (264)
283 cd03289 ABCC_CFTR2 The CFTR su 99.9 1.2E-25 2.5E-30 214.9 -3.2 189 75-323 3-209 (275)
284 PRK15064 ABC transporter ATP-b 99.9 2E-25 4.4E-30 232.1 -1.8 183 73-323 318-508 (530)
285 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 3.1E-25 6.8E-30 231.7 -0.6 186 73-323 321-513 (552)
286 PRK11819 putative ABC transpor 99.9 3.6E-25 7.8E-30 231.4 -1.0 186 73-323 323-515 (556)
287 COG4172 ABC-type uncharacteriz 99.9 1.4E-24 3.1E-29 209.5 3.1 209 71-321 273-498 (534)
288 cd03290 ABCC_SUR1_N The SUR do 99.9 2.5E-25 5.4E-30 205.6 -2.3 179 102-320 17-211 (218)
289 cd03288 ABCC_SUR2 The SUR doma 99.9 6.6E-25 1.4E-29 207.9 -1.1 194 73-320 18-224 (257)
290 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 7.2E-25 1.6E-29 229.0 -0.9 183 74-320 4-228 (552)
291 COG0488 Uup ATPase components 99.9 2.3E-24 4.9E-29 221.4 2.3 190 74-322 3-222 (530)
292 COG4586 ABC-type uncharacteriz 99.9 2.1E-25 4.6E-30 205.9 -5.3 186 100-322 38-229 (325)
293 PRK10636 putative ABC transpor 99.9 1.5E-24 3.2E-29 229.8 0.2 197 75-320 2-216 (638)
294 PRK11174 cysteine/glutathione 99.9 1E-24 2.2E-29 229.5 -1.1 192 81-323 353-556 (588)
295 TIGR01187 potA spermidine/putr 99.9 1.7E-25 3.8E-30 218.8 -7.2 167 139-322 1-173 (325)
296 PRK10535 macrolide transporter 99.9 7.8E-25 1.7E-29 232.4 -3.0 200 74-320 4-213 (648)
297 TIGR02868 CydC thiol reductant 99.9 1.4E-24 3.1E-29 225.7 -1.6 182 75-310 335-529 (529)
298 TIGR03771 anch_rpt_ABC anchore 99.9 4.8E-25 1E-29 204.6 -4.6 169 134-323 6-186 (223)
299 cd00267 ABC_ATPase ABC (ATP-bi 99.9 1.6E-23 3.4E-28 183.8 5.2 139 86-320 7-150 (157)
300 COG4988 CydD ABC-type transpor 99.9 5.1E-24 1.1E-28 215.2 2.3 189 79-321 325-525 (559)
301 PRK15177 Vi polysaccharide exp 99.9 4.1E-25 8.9E-30 203.7 -5.3 167 101-321 2-174 (213)
302 KOG0058|consensus 99.9 7.7E-24 1.7E-28 217.8 3.2 190 80-316 468-669 (716)
303 cd03236 ABC_RNaseL_inhibitor_d 99.9 6.2E-25 1.3E-29 207.8 -5.1 186 86-321 8-210 (255)
304 PLN03211 ABC transporter G-25; 99.9 9.8E-25 2.1E-29 231.3 -5.0 186 86-320 76-277 (659)
305 COG2274 SunT ABC-type bacterio 99.9 1E-23 2.2E-28 223.1 2.7 194 75-320 472-677 (709)
306 COG4172 ABC-type uncharacteriz 99.9 4.6E-24 9.9E-29 206.0 -0.1 206 73-323 5-231 (534)
307 cd03273 ABC_SMC2_euk Eukaryoti 99.9 6.4E-24 1.4E-28 200.5 0.4 200 75-320 1-238 (251)
308 KOG0057|consensus 99.9 7.5E-24 1.6E-28 211.5 0.5 189 75-316 352-552 (591)
309 PRK11176 lipid transporter ATP 99.9 1.6E-23 3.5E-28 220.1 3.0 195 74-321 341-549 (582)
310 cd03238 ABC_UvrA The excision 99.9 5E-24 1.1E-28 190.4 -1.0 142 100-320 9-158 (176)
311 COG4136 ABC-type uncharacteriz 99.9 3.8E-23 8.3E-28 175.5 4.2 178 88-314 12-199 (213)
312 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 1.4E-23 3.1E-28 225.4 1.8 192 74-321 477-682 (710)
313 COG1134 TagH ABC-type polysacc 99.9 7.6E-25 1.7E-29 200.3 -6.8 175 100-323 41-220 (249)
314 TIGR02857 CydD thiol reductant 99.9 6E-24 1.3E-28 221.0 -1.2 193 74-320 320-526 (529)
315 PLN03073 ABC transporter F fam 99.9 8.4E-24 1.8E-28 225.6 -0.3 185 73-322 507-696 (718)
316 PRK11147 ABC transporter ATPas 99.9 1E-22 2.2E-27 215.9 7.4 192 74-320 3-223 (635)
317 COG4107 PhnK ABC-type phosphon 99.9 1.9E-23 4E-28 181.4 1.3 200 73-321 5-223 (258)
318 PRK11160 cysteine/glutathione 99.9 1.2E-23 2.5E-28 220.9 -0.7 195 74-322 338-545 (574)
319 PRK10790 putative multidrug tr 99.9 3.9E-23 8.5E-28 217.7 3.1 192 74-320 340-544 (592)
320 cd03278 ABC_SMC_barmotin Barmo 99.9 2.3E-23 5E-28 189.8 1.2 176 78-320 2-185 (197)
321 TIGR01842 type_I_sec_PrtD type 99.9 7.2E-23 1.6E-27 213.6 4.8 194 74-320 316-523 (544)
322 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 2.8E-23 6.1E-28 222.3 1.2 191 74-321 451-655 (686)
323 COG1101 PhnK ABC-type uncharac 99.9 1E-23 2.3E-28 188.7 -2.0 186 99-320 19-219 (263)
324 cd03291 ABCC_CFTR1 The CFTR su 99.9 3.1E-23 6.7E-28 198.9 0.7 180 73-320 38-228 (282)
325 KOG0055|consensus 99.9 1.3E-23 2.7E-28 227.2 -2.2 185 86-320 358-557 (1228)
326 TIGR01192 chvA glucan exporter 99.9 1.3E-23 2.9E-28 220.8 -2.4 194 74-321 334-540 (585)
327 COG4133 CcmA ABC-type transpor 99.9 7.3E-24 1.6E-28 186.2 -3.9 165 104-309 20-189 (209)
328 TIGR00958 3a01208 Conjugate Tr 99.9 1.4E-22 3E-27 217.5 5.0 199 74-321 478-684 (711)
329 COG4167 SapF ABC-type antimicr 99.9 2.1E-23 4.5E-28 182.5 -1.4 206 74-320 4-220 (267)
330 COG1132 MdlB ABC-type multidru 99.9 2E-23 4.4E-28 218.8 -1.9 193 75-321 329-534 (567)
331 TIGR01193 bacteriocin_ABC ABC- 99.9 1.4E-22 3E-27 217.7 4.2 194 74-321 473-679 (708)
332 PRK13657 cyclic beta-1,2-gluca 99.9 1.1E-22 2.3E-27 214.3 2.8 196 74-323 334-542 (588)
333 KOG0933|consensus 99.9 3.9E-20 8.3E-25 193.1 21.6 252 75-386 1-283 (1174)
334 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1.3E-23 2.8E-28 197.1 -3.8 198 77-320 1-230 (243)
335 TIGR02203 MsbA_lipidA lipid A 99.9 2.2E-22 4.7E-27 211.1 4.7 197 74-323 330-540 (571)
336 TIGR03375 type_I_sec_LssB type 99.9 1.6E-22 3.4E-27 216.8 3.7 194 74-321 463-670 (694)
337 PRK10789 putative multidrug tr 99.9 7.1E-23 1.5E-27 214.8 0.8 179 102-322 331-521 (569)
338 PRK10522 multidrug transporter 99.9 1.2E-22 2.5E-27 212.2 1.9 190 74-320 322-519 (547)
339 cd03279 ABC_sbcCD SbcCD and ot 99.8 3.1E-22 6.7E-27 184.5 4.2 193 75-320 1-203 (213)
340 TIGR00954 3a01203 Peroxysomal 99.8 6.4E-23 1.4E-27 218.1 -0.9 185 74-320 451-648 (659)
341 TIGR02204 MsbA_rel ABC transpo 99.8 4.2E-22 9.1E-27 209.2 5.0 195 74-322 337-546 (576)
342 TIGR01194 cyc_pep_trnsptr cycl 99.8 2.1E-22 4.4E-27 210.7 1.8 195 74-320 337-540 (555)
343 TIGR01846 type_I_sec_HlyB type 99.8 1.5E-22 3.3E-27 216.9 0.4 196 74-323 455-664 (694)
344 COG4778 PhnL ABC-type phosphon 99.8 6.5E-23 1.4E-27 177.4 -2.0 207 74-323 4-225 (235)
345 PLN03073 ABC transporter F fam 99.8 3.2E-22 6.9E-27 213.5 2.5 187 86-320 185-411 (718)
346 PRK13409 putative ATPase RIL; 99.8 2.4E-23 5.3E-28 218.1 -5.9 183 86-321 81-282 (590)
347 PTZ00265 multidrug resistance 99.8 1.7E-22 3.7E-27 229.7 0.3 182 102-323 1184-1431(1466)
348 PTZ00265 multidrug resistance 99.8 2.9E-22 6.2E-27 227.9 1.7 203 74-323 382-652 (1466)
349 COG4987 CydC ABC-type transpor 99.8 1.1E-22 2.4E-27 203.0 -2.0 191 80-319 339-541 (573)
350 COG4618 ArpD ABC-type protease 99.8 2.2E-22 4.8E-27 199.3 0.1 173 101-314 351-536 (580)
351 KOG0964|consensus 99.8 2.4E-19 5.3E-24 186.4 21.9 222 75-361 1-251 (1200)
352 PF00005 ABC_tran: ABC transpo 99.8 2.6E-23 5.6E-28 177.7 -7.2 137 102-283 1-137 (137)
353 PLN03232 ABC transporter C fam 99.8 8.5E-22 1.8E-26 225.4 0.9 193 74-321 1234-1440(1495)
354 TIGR00956 3a01205 Pleiotropic 99.8 2.3E-22 5E-27 228.2 -3.8 193 74-319 759-972 (1394)
355 TIGR00955 3a01204 The Eye Pigm 99.8 2.3E-22 4.9E-27 212.6 -3.6 178 102-320 41-237 (617)
356 COG0396 sufC Cysteine desulfur 99.8 6.7E-22 1.5E-26 179.0 -0.8 193 74-314 3-208 (251)
357 KOG0018|consensus 99.8 3.4E-19 7.5E-24 187.5 18.4 233 76-383 3-263 (1141)
358 PLN03130 ABC transporter C fam 99.8 2.5E-21 5.3E-26 222.2 2.1 192 74-320 1237-1442(1622)
359 KOG0055|consensus 99.8 5.9E-21 1.3E-25 206.7 4.9 186 86-315 995-1190(1228)
360 KOG0056|consensus 99.8 6.1E-21 1.3E-25 187.8 3.2 186 74-312 537-735 (790)
361 PTZ00243 ABC transporter; Prov 99.8 7.1E-21 1.5E-25 218.0 4.2 192 74-320 1308-1514(1560)
362 TIGR00957 MRP_assoc_pro multi 99.8 5.2E-21 1.1E-25 219.3 3.0 194 74-320 1284-1489(1522)
363 cd03240 ABC_Rad50 The catalyti 99.8 1.2E-20 2.6E-25 172.9 3.9 159 134-320 22-192 (204)
364 TIGR01271 CFTR_protein cystic 99.8 7.1E-21 1.5E-25 217.7 1.7 191 74-320 1217-1421(1490)
365 TIGR00956 3a01205 Pleiotropic 99.8 2.1E-21 4.6E-26 220.5 -4.0 183 101-319 76-280 (1394)
366 COG0488 Uup ATPase components 99.8 7.4E-21 1.6E-25 195.5 -0.5 187 73-324 320-510 (530)
367 PLN03140 ABC transporter G fam 99.8 1.7E-21 3.6E-26 221.0 -6.9 178 101-319 895-1089(1470)
368 TIGR02168 SMC_prok_B chromosom 99.8 6.7E-17 1.5E-21 182.0 29.7 236 77-374 2-259 (1179)
369 KOG0059|consensus 99.8 9.2E-21 2E-25 207.1 -1.8 204 73-323 563-771 (885)
370 cd03270 ABC_UvrA_I The excisio 99.8 2.9E-21 6.2E-26 179.7 -5.2 72 242-321 131-209 (226)
371 PLN03140 ABC transporter G fam 99.8 2.2E-20 4.9E-25 211.9 -2.4 182 100-320 179-408 (1470)
372 TIGR01271 CFTR_protein cystic 99.8 1.4E-20 3.1E-25 215.2 -4.2 163 102-320 442-617 (1490)
373 TIGR00957 MRP_assoc_pro multi 99.8 3.2E-20 6.9E-25 212.9 -1.8 180 74-320 636-831 (1522)
374 cd03275 ABC_SMC1_euk Eukaryoti 99.8 4.1E-20 8.9E-25 174.2 -1.0 72 245-320 152-228 (247)
375 TIGR02169 SMC_prok_A chromosom 99.7 8.9E-16 1.9E-20 173.1 30.4 143 77-285 2-147 (1164)
376 cd03276 ABC_SMC6_euk Eukaryoti 99.7 4.5E-19 9.7E-24 161.7 2.1 158 134-320 21-185 (198)
377 PTZ00243 ABC transporter; Prov 99.7 2.1E-19 4.5E-24 206.1 -1.4 163 102-320 676-851 (1560)
378 COG4138 BtuD ABC-type cobalami 99.7 7.6E-20 1.7E-24 159.1 -3.9 177 134-325 25-207 (248)
379 PLN03130 ABC transporter C fam 99.7 1.5E-18 3.2E-23 199.5 3.6 163 102-320 633-809 (1622)
380 PLN03232 ABC transporter C fam 99.7 1.4E-18 3E-23 199.2 3.2 164 102-320 633-809 (1495)
381 cd03239 ABC_SMC_head The struc 99.7 1.3E-17 2.9E-22 149.4 7.7 162 77-320 1-167 (178)
382 KOG0927|consensus 99.7 1.6E-18 3.4E-23 173.1 0.1 193 73-326 388-582 (614)
383 COG5265 ATM1 ABC-type transpor 99.7 2.8E-18 6.1E-23 167.0 0.3 171 102-313 279-461 (497)
384 KOG0061|consensus 99.7 1.2E-18 2.7E-23 183.2 -2.8 169 102-309 46-229 (613)
385 KOG0979|consensus 99.7 9E-15 1.9E-19 153.9 23.6 235 76-385 21-286 (1072)
386 cd03271 ABC_UvrA_II The excisi 99.7 1.3E-18 2.8E-23 164.7 -5.8 71 242-320 163-241 (261)
387 KOG0062|consensus 99.7 7.2E-17 1.6E-21 160.5 6.1 78 242-325 192-270 (582)
388 cd03277 ABC_SMC5_euk Eukaryoti 99.6 6.1E-17 1.3E-21 149.2 3.0 77 242-320 120-202 (213)
389 KOG0054|consensus 99.6 1.4E-16 3.1E-21 176.3 6.0 195 73-316 1137-1340(1381)
390 KOG0054|consensus 99.6 3E-16 6.5E-21 173.8 2.7 161 101-315 536-708 (1381)
391 KOG0927|consensus 99.6 3E-16 6.6E-21 156.9 -1.0 76 242-323 215-292 (614)
392 COG4170 SapD ABC-type antimicr 99.6 1.4E-16 3E-21 142.5 -3.1 181 101-320 22-229 (330)
393 COG4178 ABC-type uncharacteriz 99.6 7.7E-16 1.7E-20 158.4 1.1 156 102-309 409-573 (604)
394 PRK00635 excinuclease ABC subu 99.5 1.3E-15 2.7E-20 172.9 1.1 77 242-323 803-884 (1809)
395 COG4615 PvdE ABC-type sideroph 99.5 1.6E-15 3.5E-20 146.7 0.9 176 102-324 339-522 (546)
396 PF02463 SMC_N: RecF/RecN/SMC 99.5 4E-14 8.7E-19 130.7 10.1 63 247-313 135-202 (220)
397 cd03227 ABC_Class2 ABC-type Cl 99.5 8.4E-15 1.8E-19 129.3 4.9 67 249-319 78-149 (162)
398 COG1129 MglA ABC-type sugar tr 99.5 1.2E-15 2.7E-20 154.0 -1.7 182 104-323 277-474 (500)
399 KOG0060|consensus 99.5 1.4E-14 3E-19 146.1 4.4 165 102-311 451-628 (659)
400 COG1245 Predicted ATPase, RNas 99.5 2.7E-15 5.7E-20 147.5 -1.7 157 134-323 367-529 (591)
401 KOG0066|consensus 99.5 5.3E-15 1.1E-19 144.6 -0.3 174 79-313 588-764 (807)
402 PRK00349 uvrA excinuclease ABC 99.4 1.1E-14 2.3E-19 158.8 -2.9 74 242-323 824-905 (943)
403 cd03280 ABC_MutS2 MutS2 homolo 99.4 4.3E-14 9.4E-19 129.0 0.2 70 244-322 87-162 (200)
404 KOG0062|consensus 99.4 1.3E-14 2.7E-19 144.6 -3.7 185 72-320 360-549 (582)
405 KOG0250|consensus 99.4 6.3E-11 1.4E-15 126.8 23.4 224 134-386 62-320 (1074)
406 cd03241 ABC_RecN RecN ATPase i 99.4 3.6E-14 7.9E-19 135.9 -1.6 70 246-320 168-242 (276)
407 COG3845 ABC-type uncharacteriz 99.4 1.4E-13 2.9E-18 137.2 1.8 203 72-323 255-476 (501)
408 KOG0064|consensus 99.4 3.9E-14 8.4E-19 141.3 -2.2 175 88-311 484-670 (728)
409 COG1245 Predicted ATPase, RNas 99.4 5.3E-14 1.2E-18 138.4 -2.3 168 134-319 100-282 (591)
410 KOG0065|consensus 99.3 1.1E-14 2.4E-19 158.6 -8.4 157 134-309 817-989 (1391)
411 KOG0066|consensus 99.3 1.6E-13 3.4E-18 134.3 0.4 78 242-325 406-484 (807)
412 PRK03918 chromosome segregatio 99.3 4.4E-10 9.5E-15 124.0 27.1 47 75-158 1-47 (880)
413 KOG2355|consensus 99.3 6.5E-13 1.4E-17 118.8 2.4 176 104-320 32-218 (291)
414 PRK02224 chromosome segregatio 99.3 3.3E-10 7.1E-15 125.0 23.1 47 75-158 1-47 (880)
415 TIGR00606 rad50 rad50. This fa 99.3 1.5E-10 3.2E-15 132.3 20.6 60 77-173 3-67 (1311)
416 PRK01156 chromosome segregatio 99.3 9.9E-10 2.1E-14 121.5 26.5 45 75-156 1-45 (895)
417 TIGR00630 uvra excinuclease AB 99.3 2.5E-12 5.4E-17 140.2 5.3 74 242-320 822-900 (924)
418 PHA02562 46 endonuclease subun 99.3 8.6E-10 1.9E-14 115.7 23.6 48 74-156 1-49 (562)
419 cd03283 ABC_MutS-like MutS-lik 99.2 7.2E-12 1.6E-16 114.3 3.7 57 257-316 92-154 (199)
420 cd03285 ABC_MSH2_euk MutS2 hom 99.2 5.1E-12 1.1E-16 117.3 2.7 72 246-322 87-164 (222)
421 TIGR01069 mutS2 MutS2 family p 99.2 2.6E-11 5.6E-16 130.7 8.3 60 245-312 382-447 (771)
422 COG2401 ABC-type ATPase fused 99.2 2.8E-12 6.1E-17 125.1 -1.0 166 101-316 398-574 (593)
423 COG0178 UvrA Excinuclease ATPa 99.1 7.9E-11 1.7E-15 123.3 8.1 69 242-314 816-889 (935)
424 cd03282 ABC_MSH4_euk MutS4 hom 99.1 7.1E-12 1.5E-16 114.8 0.1 64 245-316 88-157 (204)
425 cd03243 ABC_MutS_homologs The 99.1 8.1E-12 1.8E-16 114.1 0.3 59 248-314 91-155 (202)
426 PRK00409 recombination and DNA 99.1 3.2E-10 6.9E-15 122.7 11.7 63 244-314 386-454 (782)
427 TIGR00618 sbcc exonuclease Sbc 99.1 5.2E-09 1.1E-13 117.4 21.0 52 75-160 1-52 (1042)
428 cd03242 ABC_RecF RecF is a rec 99.1 4E-11 8.7E-16 114.5 3.6 71 245-317 180-255 (270)
429 TIGR03185 DNA_S_dndD DNA sulfu 99.1 1.2E-08 2.6E-13 109.0 22.3 55 75-165 1-56 (650)
430 COG0419 SbcC ATPase involved i 99.0 1.8E-08 4E-13 111.5 20.8 51 75-163 1-51 (908)
431 PRK00635 excinuclease ABC subu 99.0 9.9E-11 2.1E-15 133.7 1.9 73 242-319 1693-1770(1809)
432 PRK10246 exonuclease subunit S 99.0 4.9E-08 1.1E-12 109.4 21.4 53 75-163 1-56 (1047)
433 PRK10869 recombination and rep 98.9 1.1E-07 2.4E-12 99.6 21.6 118 76-265 1-123 (553)
434 TIGR00634 recN DNA repair prot 98.9 6.5E-08 1.4E-12 101.7 19.2 33 232-264 94-126 (563)
435 smart00534 MUTSac ATPase domai 98.9 2.4E-10 5.3E-15 103.0 0.0 69 243-319 56-130 (185)
436 cd00820 PEPCK_HprK Phosphoenol 98.9 1.3E-09 2.8E-14 89.1 3.8 63 100-198 3-65 (107)
437 PRK00064 recF recombination pr 98.9 1.2E-07 2.7E-12 94.3 17.4 44 75-155 1-44 (361)
438 cd03284 ABC_MutS1 MutS1 homolo 98.8 2.1E-09 4.5E-14 99.4 3.7 60 256-320 97-162 (216)
439 COG3910 Predicted ATPase [Gene 98.8 7.7E-10 1.7E-14 98.0 -0.8 65 241-313 122-191 (233)
440 TIGR02680 conserved hypothetic 98.8 3.7E-06 8E-11 96.5 28.0 85 303-387 239-323 (1353)
441 TIGR03238 dnd_assoc_3 dnd syst 98.8 2.3E-09 4.9E-14 108.1 1.6 67 101-200 21-88 (504)
442 PRK04863 mukB cell division pr 98.7 3.3E-06 7.1E-11 96.6 26.5 81 305-385 318-400 (1486)
443 TIGR02858 spore_III_AA stage I 98.7 6.1E-09 1.3E-13 99.3 3.8 39 135-178 112-150 (270)
444 cd03281 ABC_MSH5_euk MutS5 hom 98.7 6.9E-09 1.5E-13 95.7 3.8 59 253-317 95-161 (213)
445 PF13555 AAA_29: P-loop contai 98.7 1.2E-08 2.6E-13 74.8 3.9 23 134-156 23-45 (62)
446 cd03287 ABC_MSH3_euk MutS3 hom 98.7 1E-08 2.2E-13 95.0 3.9 31 103-155 22-52 (222)
447 KOG0065|consensus 98.6 1.5E-08 3.1E-13 111.6 3.5 158 102-296 131-307 (1391)
448 PRK14079 recF recombination pr 98.6 5.9E-06 1.3E-10 81.9 20.4 45 75-156 1-45 (349)
449 COG1196 Smc Chromosome segrega 98.6 1.5E-06 3.3E-11 98.7 18.0 12 191-202 79-90 (1163)
450 KOG0063|consensus 98.5 7.3E-09 1.6E-13 101.9 -2.4 159 134-324 367-531 (592)
451 KOG0962|consensus 98.5 1.7E-06 3.7E-11 95.4 15.3 39 134-172 27-65 (1294)
452 cd03286 ABC_MSH6_euk MutS6 hom 98.5 1.6E-07 3.5E-12 86.9 4.7 59 255-317 96-160 (218)
453 PF13476 AAA_23: AAA domain; P 98.4 8.2E-08 1.8E-12 86.3 2.0 25 134-158 19-43 (202)
454 PTZ00132 GTP-binding nuclear p 98.4 4.9E-07 1.1E-11 83.1 6.1 37 253-295 157-203 (215)
455 PRK00349 uvrA excinuclease ABC 98.4 2.8E-08 6E-13 109.1 -2.7 81 235-323 475-563 (943)
456 TIGR00630 uvra excinuclease AB 98.4 3.7E-08 8E-13 107.9 -2.0 74 242-323 481-561 (924)
457 PRK13695 putative NTPase; Prov 98.3 4E-07 8.7E-12 81.0 2.9 71 246-324 76-149 (174)
458 cd03273 ABC_SMC2_euk Eukaryoti 98.3 5.4E-06 1.2E-10 78.2 9.9 126 157-285 26-153 (251)
459 KOG0964|consensus 98.2 2.8E-05 6.2E-10 82.9 15.7 22 191-212 77-98 (1200)
460 cd03275 ABC_SMC1_euk Eukaryoti 98.2 9.8E-06 2.1E-10 76.3 9.9 139 77-285 1-140 (247)
461 cd01130 VirB11-like_ATPase Typ 98.2 1E-06 2.2E-11 79.5 2.8 34 134-172 25-58 (186)
462 PRK06002 fliI flagellum-specif 98.1 4E-06 8.7E-11 84.9 6.3 87 74-200 139-230 (450)
463 TIGR00611 recf recF protein. A 98.0 5.3E-06 1.2E-10 82.7 4.7 44 75-155 1-44 (365)
464 COG3950 Predicted ATP-binding 98.0 2.7E-06 5.9E-11 82.0 1.8 46 75-156 1-46 (440)
465 cd01128 rho_factor Transcripti 97.9 6E-07 1.3E-11 84.7 -3.5 22 134-155 16-37 (249)
466 cd03272 ABC_SMC3_euk Eukaryoti 97.9 7.8E-05 1.7E-09 69.8 10.6 122 156-284 23-144 (243)
467 PRK08533 flagellar accessory p 97.9 4.2E-06 9.1E-11 78.1 1.9 22 134-155 24-46 (230)
468 TIGR00235 udk uridine kinase. 97.9 5.6E-06 1.2E-10 75.8 2.0 25 134-162 6-30 (207)
469 PRK10078 ribose 1,5-bisphospho 97.9 8.2E-06 1.8E-10 73.4 3.1 26 134-163 2-27 (186)
470 PRK09270 nucleoside triphospha 97.9 1.1E-05 2.3E-10 75.2 3.6 48 120-172 19-66 (229)
471 COG1195 RecF Recombinational D 97.8 0.0008 1.7E-08 66.4 16.0 44 75-155 1-44 (363)
472 PRK09825 idnK D-gluconate kina 97.8 1.1E-05 2.4E-10 72.1 2.6 27 134-164 3-29 (176)
473 COG1106 Predicted ATPases [Gen 97.8 1.3E-05 2.9E-10 79.2 3.0 46 76-158 1-46 (371)
474 COG0497 RecN ATPase involved i 97.7 0.0034 7.4E-08 65.0 19.9 100 135-265 23-125 (557)
475 PF13175 AAA_15: AAA ATPase do 97.7 2.1E-05 4.6E-10 78.9 3.8 43 77-155 1-43 (415)
476 TIGR00554 panK_bact pantothena 97.7 1.4E-05 2.9E-10 77.1 2.0 42 134-179 62-104 (290)
477 KOG0063|consensus 97.7 1.2E-06 2.5E-11 86.7 -5.7 69 243-318 208-281 (592)
478 PF11398 DUF2813: Protein of u 97.7 4.2E-05 9.1E-10 76.0 5.1 28 134-165 22-49 (373)
479 PRK09862 putative ATP-dependen 97.7 2.9E-05 6.3E-10 80.2 4.0 58 86-178 192-249 (506)
480 TIGR00618 sbcc exonuclease Sbc 97.7 9.1E-06 2E-10 91.5 0.2 76 241-320 943-1030(1042)
481 PRK05399 DNA mismatch repair p 97.7 3.6E-05 7.8E-10 84.7 4.7 66 249-319 667-738 (854)
482 PRK08149 ATP synthase SpaL; Va 97.7 2.6E-05 5.7E-10 78.7 3.1 32 101-155 141-172 (428)
483 COG4637 Predicted ATPase [Gene 97.6 2E-05 4.4E-10 75.3 1.7 65 246-316 268-337 (373)
484 PRK07196 fliI flagellum-specif 97.6 3.3E-05 7.2E-10 78.1 3.0 35 101-162 145-179 (434)
485 PRK10416 signal recognition pa 97.6 3.9E-05 8.4E-10 75.0 3.2 61 134-199 114-177 (318)
486 PRK07721 fliI flagellum-specif 97.6 4.1E-05 8.9E-10 77.8 3.4 45 101-173 148-192 (438)
487 cd02023 UMPK Uridine monophosp 97.6 2.8E-05 6.1E-10 70.5 2.0 37 136-179 1-37 (198)
488 cd01136 ATPase_flagellum-secre 97.6 4.3E-05 9.3E-10 74.7 3.0 32 134-170 69-100 (326)
489 TIGR02322 phosphon_PhnN phosph 97.6 4.3E-05 9.2E-10 68.1 2.8 22 134-155 1-22 (179)
490 PLN02796 D-glycerate 3-kinase 97.6 2.4E-05 5.2E-10 76.7 1.2 35 136-174 102-138 (347)
491 TIGR02788 VirB11 P-type DNA tr 97.6 4.7E-05 1E-09 74.2 3.1 58 257-324 209-266 (308)
492 TIGR02546 III_secr_ATP type II 97.6 5.2E-05 1.1E-09 76.9 3.4 44 101-172 135-178 (422)
493 TIGR03263 guanyl_kin guanylate 97.5 5.4E-05 1.2E-09 67.3 3.0 22 134-155 1-22 (180)
494 cd02025 PanK Pantothenate kina 97.5 3.6E-05 7.8E-10 71.3 1.8 34 136-173 1-35 (220)
495 PHA02562 46 endonuclease subun 97.5 1.3E-05 2.9E-10 84.1 -1.7 74 243-320 463-546 (562)
496 PRK00300 gmk guanylate kinase; 97.5 6.4E-05 1.4E-09 68.4 3.0 23 134-156 5-27 (205)
497 PRK06995 flhF flagellar biosyn 97.5 4E-05 8.6E-10 78.6 1.4 23 133-155 255-277 (484)
498 TIGR00606 rad50 rad50. This fa 97.4 4.6E-05 1E-09 87.7 1.5 67 247-319 1198-1279(1311)
499 PRK07960 fliI flagellum-specif 97.4 8.7E-05 1.9E-09 75.2 3.2 22 134-155 175-196 (455)
500 PRK07594 type III secretion sy 97.4 0.00018 4E-09 72.8 5.5 31 134-169 155-185 (433)
No 1
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-41 Score=303.02 Aligned_cols=205 Identities=17% Similarity=0.237 Sum_probs=163.0
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.++. ..|+++++|. ||||.|++ ++++|+|||||||||||||+
T Consensus 7 ~~~~~~l~----~yYg~~~aL~--------~i~l~i~~----------------------~~VTAlIGPSGcGKST~LR~ 52 (253)
T COG1117 7 AIEVRDLN----LYYGDKHALK--------DINLDIPK----------------------NKVTALIGPSGCGKSTLLRC 52 (253)
T ss_pred eeEeccee----EEECchhhhc--------cCceeccC----------------------CceEEEECCCCcCHHHHHHH
Confidence 45555665 6799888865 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceE
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l 233 (388)
+++|++-+-|....|++++.|.+++-...+...+|+ ++|+|||.|++||...+.+|++.. ++++..+...+.+ .+.
T Consensus 53 lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr-~vGMVFQkPnPFp~SIydNVayG~-r~~g~~~~~ldei--Ve~ 128 (253)
T COG1117 53 LNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRR-RVGMVFQKPNPFPMSIYDNVAYGL-RLHGIKDKELDEI--VES 128 (253)
T ss_pred HHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHH-HheeeccCCCCCCchHHHHHHHhH-HhhccchHHHHHH--HHH
Confidence 999998776666789999999998866666677775 499999999999976666777665 4444332111110 111
Q ss_pred EEEEEee------eCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhH
Q psy14062 234 EIARTAF------YDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTR 302 (388)
Q Consensus 234 ~~~r~~~------~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ 302 (388)
.+.+... +.+.+++.|||||+||+||||+|+. .|++||||||||+| ..|.+++.+++++. |
T Consensus 129 sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv------~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~y--T 200 (253)
T COG1117 129 SLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAV------KPEVLLMDEPTSALDPISTLKIEELITELKKKY--T 200 (253)
T ss_pred HHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhc------CCcEEEecCcccccCchhHHHHHHHHHHHHhcc--E
Confidence 1222222 3478899999999999999999999 99999999999999 77888888988655 6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q psy14062 303 VQLVETDLKALEPELRKAVNFL 324 (388)
Q Consensus 303 ii~vtH~l~~l~~~~d~~~~y~ 324 (388)
|++|||+|+++.+.+|...-|.
T Consensus 201 IviVTHnmqQAaRvSD~taFf~ 222 (253)
T COG1117 201 IVIVTHNMQQAARVSDYTAFFY 222 (253)
T ss_pred EEEEeCCHHHHHHHhHhhhhhc
Confidence 9999999999999999876654
No 2
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-41 Score=300.19 Aligned_cols=202 Identities=17% Similarity=0.184 Sum_probs=163.2
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.++++. |+||+..+|+ +|||+|.+ |++++|||||||||||||||
T Consensus 2 mi~i~~l~----K~fg~~~VLk--------gi~l~v~~----------------------Gevv~iiGpSGSGKSTlLRc 47 (240)
T COG1126 2 MIEIKNLS----KSFGDKEVLK--------GISLSVEK----------------------GEVVVIIGPSGSGKSTLLRC 47 (240)
T ss_pred eEEEEeee----EEeCCeEEec--------CcceeEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 56777888 9999999876 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEE-EeccccCCCCccccccCCce
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAI-HFAQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~-~~~~~~~~~~~~~~~~~~~~ 232 (388)
|+ ++. ++.+|.+.++|..+.... +...+| +++|+|||+.++||.+++.++.. ......+.+..+.+......
T Consensus 48 lN----~LE-~~~~G~I~i~g~~~~~~~-~~~~~R-~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~l 120 (240)
T COG1126 48 LN----GLE-EPDSGSITVDGEDVGDKK-DILKLR-RKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALEL 120 (240)
T ss_pred HH----CCc-CCCCceEEECCEeccchh-hHHHHH-HhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHH
Confidence 99 998 778999888875443211 334455 45999999999999999876543 23222233322222222234
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++..+.+.++..|||||+||++|||||+. +|+++|+|||||+| .++...++++.+++.+ .++||
T Consensus 121 L~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM------~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmT-MivVT 193 (240)
T COG1126 121 LEKVGLADKADAYPAQLSGGQQQRVAIARALAM------DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMT-MIIVT 193 (240)
T ss_pred HHHcCchhhhhhCccccCcHHHHHHHHHHHHcC------CCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCe-EEEEe
Confidence 555667777888999999999999999999999 99999999999999 7788899999999975 99999
Q ss_pred HhHHHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAVNF 323 (388)
Q Consensus 308 H~l~~l~~~~d~~~~y 323 (388)
|+|..+.+.+||+.-+
T Consensus 194 HEM~FAr~VadrviFm 209 (240)
T COG1126 194 HEMGFAREVADRVIFM 209 (240)
T ss_pred chhHHHHHhhheEEEe
Confidence 9999999999987543
No 3
>KOG0996|consensus
Probab=100.00 E-value=1.7e-34 Score=303.47 Aligned_cols=266 Identities=51% Similarity=0.811 Sum_probs=231.0
Q ss_pred cCCCCCCCCCCCCCCcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEE
Q psy14062 59 IPPIAPVCFADPTGPRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNA 138 (388)
Q Consensus 59 ~~~~~~~~~~~~~~~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 138 (388)
.||++|++...+.+|+|+|.+|.+.|||||.|+++++||| .+|++
T Consensus 68 ~pp~~~~~t~~~~~~RL~I~~i~~~NFKSYaG~~ilGPFH-----------------------------------ksFta 112 (1293)
T KOG0996|consen 68 PPPRPPHMTSEAGGPRLMITEIVVENFKSYAGKQILGPFH-----------------------------------KSFTA 112 (1293)
T ss_pred CCCCChhhcCCCCCCeeeehhhhhhhhhhhcCceeecCCC-----------------------------------CCcee
Confidence 5556778888889999999999999999999999999999 99995
Q ss_pred EEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEecccc
Q psy14062 139 IIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQII 218 (388)
Q Consensus 139 iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~ 218 (388)
|| ||||||||||+|+++||+|.++.++|.++++.++|++..++++.+|.|.++|+.+.
T Consensus 113 Iv----------------------GPNGSGKSNVIDsmLFVFGfRA~kiR~~klS~LIh~S~~~~~l~SCsV~vhFq~ii 170 (1293)
T KOG0996|consen 113 IV----------------------GPNGSGKSNVIDSMLFVFGFRASKIRSKKLSALIHKSDGHPNLQSCSVEVHFQKII 170 (1293)
T ss_pred eE----------------------CCCCCCchHHHHHHHHHhhhhHhHHhHHHHHHHHhccCCCCCCcceeEEEeeeeee
Confidence 54 55666667777888899999999999999999999999999999999999999988
Q ss_pred CCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEec---cchhhH----------
Q psy14062 219 DKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQ---EPIAKM---------- 285 (388)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlD---EP~s~L---------- 285 (388)
+.++..|+.++.+.+.+.|.+++++.+.|+++|...+..++...|...||+..+++||||| |.+|.|
T Consensus 171 D~~~~~~E~vp~s~~~ItRtA~~~NsSkY~Ingk~as~~~V~~lLk~~gIDleHNRFLILQGEVE~IA~MKPk~~~e~d~ 250 (1293)
T KOG0996|consen 171 DKPGGTYEVVPDSEFTITRTAFRDNSSKYYINGKEASFKDVTKLLKSHGIDLEHNRFLILQGEVEQIAMMKPKAQTENDE 250 (1293)
T ss_pred ccCCCceeecCCCeeEEEehhhhCCCceEeECCccccHHHHHHHHHhcCCCCccceeeeehhhHHHHHhcCCCCCCCCcc
Confidence 8888888889999999999999999999999999999999999999999999999999999 555544
Q ss_pred ------HHHHh----------------hhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14062 286 ------EVLYG----------------KYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERY 343 (388)
Q Consensus 286 ------e~i~~----------------~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y~~~~~~~~~~~~~~~~~~l~ 343 (388)
++|+| .+.+.+.+...++.++..++..++...+.+.+|+..++++-.++..++++.++
T Consensus 251 GmLEYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~~ 330 (1293)
T KOG0996|consen 251 GMLEYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQYILY 330 (1293)
T ss_pred hHHHHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777 22333445566788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14062 344 VNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAK 381 (388)
Q Consensus 344 ~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~ 381 (388)
+..+++...++++..+.+.+....++......+..+++
T Consensus 331 ~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~ 368 (1293)
T KOG0996|consen 331 ESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKN 368 (1293)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHH
Confidence 99999999999999988888887777664444433333
No 4
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-37 Score=282.36 Aligned_cols=197 Identities=21% Similarity=0.235 Sum_probs=155.4
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.++. ++|++..+|+ ||||+|.+ |+|++||||||||||||||+
T Consensus 3 ~l~i~~v~----~~f~~~~vl~--------~i~L~v~~----------------------GEfvsilGpSGcGKSTLLri 48 (248)
T COG1116 3 LLEIEGVS----KSFGGVEVLE--------DINLSVEK----------------------GEFVAILGPSGCGKSTLLRL 48 (248)
T ss_pred eEEEEeeE----EEeCceEEec--------cceeEECC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 46777788 9999877765 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceE
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l 233 (388)
|+ |+. .+.+|.+.+.|..+. +. ...++|+||+..++|+.|+.++..+.....+....+........+
T Consensus 49 iA----GL~-~p~~G~V~~~g~~v~--~p------~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L 115 (248)
T COG1116 49 IA----GLE-KPTSGEVLLDGRPVT--GP------GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115 (248)
T ss_pred Hh----CCC-CCCCceEEECCcccC--CC------CCCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHH
Confidence 99 999 778999887766542 21 245999999999999999886554332322222211111122355
Q ss_pred EEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 234 ~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH 308 (388)
...++....+..+++|||||+||++|||+|+. +|++|+||||+++| +.+.+.+.++.++...|+++|||
T Consensus 116 ~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~------~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTH 189 (248)
T COG1116 116 ELVGLAGFEDKYPHQLSGGMRQRVAIARALAT------RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTH 189 (248)
T ss_pred HHcCCcchhhcCccccChHHHHHHHHHHHHhc------CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeC
Confidence 56677777889999999999999999999999 99999999999999 55555666776666667999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy14062 309 DLKALEPELRKAVNF 323 (388)
Q Consensus 309 ~l~~l~~~~d~~~~y 323 (388)
|++++-..+||+.-.
T Consensus 190 di~EAv~LsdRivvl 204 (248)
T COG1116 190 DVDEAVYLADRVVVL 204 (248)
T ss_pred CHHHHHhhhCEEEEe
Confidence 999999999986544
No 5
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-36 Score=283.44 Aligned_cols=208 Identities=14% Similarity=0.173 Sum_probs=166.4
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ |.|.... .-.+.||+||||+|++ |++++|||+||||||||+|||
T Consensus 2 I~l~~vs----K~~~~~~---~~~~~al~~vsL~I~~----------------------GeI~GIIG~SGAGKSTLiR~i 52 (339)
T COG1135 2 IELENVS----KTFGQTG---TGTVTALDDVSLEIPK----------------------GEIFGIIGYSGAGKSTLLRLI 52 (339)
T ss_pred eEEEeee----eeeccCC---CCceeeeccceEEEcC----------------------CcEEEEEcCCCCcHHHHHHHH
Confidence 4556666 7786520 0012357799999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEE
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLE 234 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~ 234 (388)
+ ++- .|.+|++.++|.++..+....-...+++|||+||++++....++.++..+...+.+.+..+........++
T Consensus 53 N----~Le-~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLe 127 (339)
T COG1135 53 N----LLE-RPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLE 127 (339)
T ss_pred h----ccC-CCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHH
Confidence 9 888 77799999999887766554323334669999999999988888866555544444433322222234666
Q ss_pred EEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHh
Q psy14062 235 IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETD 309 (388)
Q Consensus 235 ~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~ 309 (388)
+.++.++.+.++.+|||||+||+.|||||+. +|++||+|||||+| ..|..+++++.++-..||+++||+
T Consensus 128 lVgL~dk~~~yP~qLSGGQKQRVaIARALa~------~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHE 201 (339)
T COG1135 128 LVGLSDKADRYPAQLSGGQKQRVAIARALAN------NPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHE 201 (339)
T ss_pred HcCChhhhccCchhcCcchhhHHHHHHHHhc------CCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEech
Confidence 7778888899999999999999999999999 99999999999999 889999999988877789999999
Q ss_pred HHHHHHHHHHHHH
Q psy14062 310 LKALEPELRKAVN 322 (388)
Q Consensus 310 l~~l~~~~d~~~~ 322 (388)
|+.+++.||++.-
T Consensus 202 m~Vvk~ic~rVav 214 (339)
T COG1135 202 MEVVKRICDRVAV 214 (339)
T ss_pred HHHHHHHhhhheE
Confidence 9999999999743
No 6
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=8.7e-37 Score=278.62 Aligned_cols=201 Identities=15% Similarity=0.238 Sum_probs=158.3
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ |.|+++.+++ |+||+|++ |+|+++||||||||||+|++|
T Consensus 2 I~~~nvs----k~y~~~~av~--------~v~l~I~~----------------------gef~vliGpSGsGKTTtLkMI 47 (309)
T COG1125 2 IEFENVS----KRYGNKKAVD--------DVNLTIEE----------------------GEFLVLIGPSGSGKTTTLKMI 47 (309)
T ss_pred ceeeeee----hhcCCceeee--------eeeEEecC----------------------CeEEEEECCCCCcHHHHHHHH
Confidence 4556666 8899888765 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEE
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLE 234 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~ 234 (388)
+ .++ .++||++.++|..+. ..+...+|+ +|||++|...+||.++++++....-.+.+.+...........+.
T Consensus 48 N----rLi-ept~G~I~i~g~~i~--~~d~~~LRr-~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~ 119 (309)
T COG1125 48 N----RLI-EPTSGEILIDGEDIS--DLDPVELRR-KIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLD 119 (309)
T ss_pred h----ccc-CCCCceEEECCeecc--cCCHHHHHH-hhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHH
Confidence 9 899 788999999887664 334556775 59999999999999999876544323333222221111122334
Q ss_pred EEEEe--eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 235 IARTA--FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 235 ~~r~~--~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+.++. .+.++++..|||||+||+-++|||+. +|+++|||||+++| ..+-+.+.++.++-..||++||
T Consensus 120 lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAa------dP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVT 193 (309)
T COG1125 120 LVGLDPSEYADRYPHELSGGQQQRVGVARALAA------DPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVT 193 (309)
T ss_pred HhCCCHHHHhhcCchhcCcchhhHHHHHHHHhc------CCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEe
Confidence 44443 35678999999999999999999999 99999999999999 6666677788777667899999
Q ss_pred HhHHHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAVNF 323 (388)
Q Consensus 308 H~l~~l~~~~d~~~~y 323 (388)
||++++-+.+|++.-+
T Consensus 194 HDidEA~kLadri~vm 209 (309)
T COG1125 194 HDIDEALKLADRIAVM 209 (309)
T ss_pred cCHHHHHhhhceEEEe
Confidence 9999999999986433
No 7
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=9.3e-36 Score=277.78 Aligned_cols=199 Identities=21% Similarity=0.292 Sum_probs=157.4
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ .+|+++.+++ ||||+|++ |++++|+||||||||||||+
T Consensus 2 ~L~~~~ls----~~y~~~~il~--------~ls~~i~~----------------------G~i~~iiGpNG~GKSTLLk~ 47 (258)
T COG1120 2 MLEVENLS----FGYGGKPILD--------DLSFSIPK----------------------GEITGILGPNGSGKSTLLKC 47 (258)
T ss_pred eeEEEEEE----EEECCeeEEe--------cceEEecC----------------------CcEEEEECCCCCCHHHHHHH
Confidence 45666666 6799888876 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEec----cccCC-CCcccccc
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFA----QIIDK-PNEEYEII 228 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~----~~~~~-~~~~~~~~ 228 (388)
|+ |++ ++.+|.+.++|..++-+. .+.+++.++||+|.+...++.++.++...-+ .++.. ...+.+.+
T Consensus 48 l~----g~l-~p~~G~V~l~g~~i~~~~---~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v 119 (258)
T COG1120 48 LA----GLL-KPKSGEVLLDGKDIASLS---PKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119 (258)
T ss_pred Hh----ccC-CCCCCEEEECCCchhhcC---HHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHH
Confidence 99 999 777999999988776433 2345678999999987777888887654321 11111 11111111
Q ss_pred CCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHH
Q psy14062 229 PGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRV 303 (388)
Q Consensus 229 ~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~i 303 (388)
...+...++....++....|||||+||+.||+||++ +|++|+|||||+.| -+++++++++.++...++
T Consensus 120 -~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ------~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tv 192 (258)
T COG1120 120 -EEALELLGLEHLADRPVDELSGGERQRVLIARALAQ------ETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTV 192 (258)
T ss_pred -HHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhc------CCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEE
Confidence 123445566667788899999999999999999999 99999999999999 788889999987755569
Q ss_pred HHHHHhHHHHHHHHHHHH
Q psy14062 304 QLVETDLKALEPELRKAV 321 (388)
Q Consensus 304 i~vtH~l~~l~~~~d~~~ 321 (388)
+++.||++.+.++||++.
T Consensus 193 v~vlHDlN~A~ryad~~i 210 (258)
T COG1120 193 VMVLHDLNLAARYADHLI 210 (258)
T ss_pred EEEecCHHHHHHhCCEEE
Confidence 999999999999999754
No 8
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.5e-36 Score=272.95 Aligned_cols=205 Identities=16% Similarity=0.198 Sum_probs=153.8
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.++. |.|+.... ...+|++|||+|++ |+|++|+|||||||||||++|
T Consensus 2 i~~~~v~----k~y~~~~~----~~~~L~~v~l~i~~----------------------Ge~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 2 IELKNVS----KIYGLGGE----KVEALKDVNLEIEA----------------------GEFVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred cEEeeeE----EEeccCCc----ceEecccceEEEcC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 4466677 87864311 02356699999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCcc-chhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceE
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~-~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l 233 (388)
. |+. .+++|++.+.|.++..+... ...+|++.||+|||+.++.|.+++.++......+.+.............+
T Consensus 52 g----~ld-~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~ 126 (226)
T COG1136 52 G----GLD-KPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELL 126 (226)
T ss_pred h----ccc-CCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHH
Confidence 9 999 45899999998777666543 35588899999999999999999887654322222222111011111122
Q ss_pred EEEEEeeeC-CCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 234 EIARTAFYD-NSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 234 ~~~r~~~~~-~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
...++.... +..++.|||||+||++|||||+. +|++|+.||||.+| ++++.++.++.++..+++++||
T Consensus 127 ~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~------~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VT 200 (226)
T COG1136 127 EVLGLEDRLLKKKPSELSGGQQQRVAIARALIN------NPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVT 200 (226)
T ss_pred HhcCChhhhccCCchhcCHHHHHHHHHHHHHhc------CCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 333444333 47899999999999999999999 99999999999999 8899999999887655699999
Q ss_pred HhHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAV 321 (388)
Q Consensus 308 H~l~~l~~~~d~~~ 321 (388)
||...+. .|||..
T Consensus 201 Hd~~lA~-~~dr~i 213 (226)
T COG1136 201 HDPELAK-YADRVI 213 (226)
T ss_pred CCHHHHH-hCCEEE
Confidence 9987665 666653
No 9
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.6e-35 Score=266.55 Aligned_cols=204 Identities=19% Similarity=0.223 Sum_probs=162.8
Q ss_pred CCcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 72 GPRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 72 ~~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
.+.+.++++. ++||++++++ ||||+|++ |++++|+|||||||||||
T Consensus 6 ~~~I~vr~v~----~~fG~~~Ild--------~v~l~V~~----------------------Gei~~iiGgSGsGKStlL 51 (263)
T COG1127 6 EPLIEVRGVT----KSFGDRVILD--------GVDLDVPR----------------------GEILAILGGSGSGKSTLL 51 (263)
T ss_pred cceEEEeeee----eecCCEEEec--------CceeeecC----------------------CcEEEEECCCCcCHHHHH
Confidence 3567788888 8999999977 99999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccch-hhhhccceeEecccCCCCCcceEEEEEEeccccCC-CCccccccC
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRAS-KIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK-PNEEYEIIP 229 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~-~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~-~~~~~~~~~ 229 (388)
|+|. |++ ++.+|++.++|..+..+..... .+| +++|++||...+|..+++.++..++.+-+.. +....+...
T Consensus 52 r~I~----Gll-~P~~GeI~i~G~~i~~ls~~~~~~ir-~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv 125 (263)
T COG1127 52 RLIL----GLL-RPDKGEILIDGEDIPQLSEEELYEIR-KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125 (263)
T ss_pred HHHh----ccC-CCCCCeEEEcCcchhccCHHHHHHHH-hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHH
Confidence 9999 999 7789999999988876655332 344 5699999999999999998776655332221 111111111
Q ss_pred CceEEEEEEeee-CCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHH
Q psy14062 230 GTDLEIARTAFY-DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRV 303 (388)
Q Consensus 230 ~~~l~~~r~~~~-~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~i 303 (388)
...++..++... .+..+..|||||++|+++|||++. +|+++++||||++| ..+..+++++++.-..|+
T Consensus 126 ~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial------dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~ 199 (263)
T COG1127 126 LMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL------DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTV 199 (263)
T ss_pred HHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc------CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEE
Confidence 112233333333 467899999999999999999999 99999999999999 777779999988877789
Q ss_pred HHHHHhHHHHHHHHHHHH
Q psy14062 304 QLVETDLKALEPELRKAV 321 (388)
Q Consensus 304 i~vtH~l~~l~~~~d~~~ 321 (388)
++||||++.+...||++.
T Consensus 200 i~VTHDl~s~~~i~Drv~ 217 (263)
T COG1127 200 IMVTHDLDSLLTIADRVA 217 (263)
T ss_pred EEEECChHHHHhhhceEE
Confidence 999999999999999863
No 10
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-35 Score=263.50 Aligned_cols=205 Identities=16% Similarity=0.221 Sum_probs=155.8
Q ss_pred cEEEEEEEeeceEEe-cCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSY-AGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy-~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
++.+++++ |.| +++++|. +|||+|++ |++++||||||||||||||
T Consensus 3 ~i~~~nl~----k~yp~~~~aL~--------~Vnl~I~~----------------------GE~VaiIG~SGaGKSTLLR 48 (258)
T COG3638 3 MIEVKNLS----KTYPGGHQALK--------DVNLEINQ----------------------GEMVAIIGPSGAGKSTLLR 48 (258)
T ss_pred eEEEeeee----eecCCCceeee--------eEeEEeCC----------------------CcEEEEECCCCCcHHHHHH
Confidence 45666676 999 7777765 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCc-cchhhhhccceeEecccCCCCCcceEEEEEE--------eccccCCCCc
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIH--------FAQIIDKPNE 223 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~-~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~--------~~~~~~~~~~ 223 (388)
+|+ |++ ++++|.+.+.+..++-+.. ...++| +++||+||.+++.+.+++.++.+. |..+++....
T Consensus 49 ~ln----gl~-d~t~G~i~~~g~~i~~~~~k~lr~~r-~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk 122 (258)
T COG3638 49 SLN----GLV-DPTSGEILFNGVQITKLKGKELRKLR-RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK 122 (258)
T ss_pred HHh----ccc-CCCcceEEecccchhccchHHHHHHH-HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCH
Confidence 999 988 7789998888876654322 223344 469999999999988877654322 1111222111
Q ss_pred cccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 224 EYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 224 ~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
......-..++..++.....++..+|||||+||++|||+|.+ +|++||.|||+++| +.+++.++++.++
T Consensus 123 ~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q------~pkiILADEPvasLDp~~a~~Vm~~l~~in~~ 196 (258)
T COG3638 123 EDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQ------QPKIILADEPVASLDPESAKKVMDILKDINQE 196 (258)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhc------CCCEEecCCcccccChhhHHHHHHHHHHHHHH
Confidence 111001112233344445567788999999999999999999 99999999999999 8899999998877
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKAVNFL 324 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~~~y~ 324 (388)
...|+++.-|+++.+.++|+|+.-..
T Consensus 197 ~g~Tvi~nLH~vdlA~~Y~~Riigl~ 222 (258)
T COG3638 197 DGITVIVNLHQVDLAKKYADRIIGLK 222 (258)
T ss_pred cCCEEEEEechHHHHHHHHhhheEec
Confidence 66679999999999999999987653
No 11
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-34 Score=281.02 Aligned_cols=201 Identities=16% Similarity=0.221 Sum_probs=158.4
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+.+.+++++ |+|++..+++ ||||+|.+ |+|++|+|||||||||+||
T Consensus 4 ~~l~i~~v~----k~yg~~~av~--------~isl~i~~----------------------Gef~~lLGPSGcGKTTlLR 49 (352)
T COG3842 4 PALEIRNVS----KSFGDFTAVD--------DISLDIKK----------------------GEFVTLLGPSGCGKTTLLR 49 (352)
T ss_pred ceEEEEeee----eecCCeeEEe--------cceeeecC----------------------CcEEEEECCCCCCHHHHHH
Confidence 467888888 9999877765 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEE-EEeccccCCCC-ccccccCC
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVA-IHFAQIIDKPN-EEYEIIPG 230 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~-~~~~~~~~~~~-~~~~~~~~ 230 (388)
+|+ |+. .+++|++.+.|..+..+ + ...+.+++|||+..+||.+++.++. +.+. ...... ........
T Consensus 50 ~IA----Gfe-~p~~G~I~l~G~~i~~l--p---p~kR~ig~VFQ~YALFPHltV~~NVafGLk-~~~~~~~~~i~~rv~ 118 (352)
T COG3842 50 MIA----GFE-QPSSGEILLDGEDITDV--P---PEKRPIGMVFQSYALFPHMTVEENVAFGLK-VRKKLKKAEIKARVE 118 (352)
T ss_pred HHh----CCC-CCCCceEEECCEECCCC--C---hhhcccceeecCcccCCCCcHHHHhhhhhh-hcCCCCHHHHHHHHH
Confidence 999 999 77899999988776532 2 2335799999999999999998654 4443 111111 11111112
Q ss_pred ceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 231 TDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 231 ~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
..+.+.++....++.+.+|||||+||+++||+|+. .|++||||||+++| +++...++++.++-..|.++
T Consensus 119 e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~------~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~ 192 (352)
T COG3842 119 EALELVGLEGFADRKPHQLSGGQQQRVALARALVP------EPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVY 192 (352)
T ss_pred HHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhc------CcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 34556666667789999999999999999999999 99999999999999 45555666666555556899
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKAVNFL 324 (388)
Q Consensus 306 vtH~l~~l~~~~d~~~~y~ 324 (388)
||||-+++...+|++.-..
T Consensus 193 VTHDqeEAl~msDrI~Vm~ 211 (352)
T COG3842 193 VTHDQEEALAMSDRIAVMN 211 (352)
T ss_pred EECCHHHHhhhccceEEcc
Confidence 9999999999999875543
No 12
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.98 E-value=2.5e-34 Score=277.75 Aligned_cols=198 Identities=14% Similarity=0.178 Sum_probs=153.9
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.++. |+||+..+++ +|||+|.+ |+|++|+||||||||||||+
T Consensus 3 ~i~l~~v~----K~yg~~~~l~--------~i~l~i~~----------------------Gef~vllGPSGcGKSTlLr~ 48 (338)
T COG3839 3 ELELKNVR----KSFGSFEVLK--------DVNLDIED----------------------GEFVVLLGPSGCGKSTLLRM 48 (338)
T ss_pred EEEEeeeE----EEcCCceeee--------cceEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 46677777 9999764544 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceE
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l 233 (388)
|+ |+. .+.+|.+.|+|..+..+. ...++|++|||+..++|.+++.++..+..+..+....+.+.......
T Consensus 49 IA----GLe-~~~~G~I~i~g~~vt~l~-----P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva 118 (338)
T COG3839 49 IA----GLE-EPTSGEILIDGRDVTDLP-----PEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118 (338)
T ss_pred Hh----CCC-CCCCceEEECCEECCCCC-----hhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHH
Confidence 99 999 778999888887664321 23367999999999999999987765543333222221111111233
Q ss_pred EEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 234 ~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH 308 (388)
.+.++....++.+..|||||+||+++||||.. +|+++|||||+|+| ..+...++++.++...|+++|||
T Consensus 119 ~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr------~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTH 192 (338)
T COG3839 119 KLLGLEHLLNRKPLQLSGGQRQRVALARALVR------KPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTH 192 (338)
T ss_pred HHcCChhHHhcCcccCChhhHHHHHHHHHHhc------CCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence 34455556788899999999999999999999 99999999999999 45555666666666667999999
Q ss_pred hHHHHHHHHHHHH
Q psy14062 309 DLKALEPELRKAV 321 (388)
Q Consensus 309 ~l~~l~~~~d~~~ 321 (388)
|-.++...+|++.
T Consensus 193 Dq~EAmtladri~ 205 (338)
T COG3839 193 DQVEAMTLADRIV 205 (338)
T ss_pred CHHHHHhhCCEEE
Confidence 9999999888753
No 13
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.7e-34 Score=266.74 Aligned_cols=194 Identities=22% Similarity=0.319 Sum_probs=144.5
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.+++ .+|++..+|. ||||+|++ |+|++||||||||||||+|+
T Consensus 4 ~i~v~nl~----v~y~~~~vl~--------~i~l~v~~----------------------G~~~~iiGPNGaGKSTLlK~ 49 (254)
T COG1121 4 MIEVENLT----VSYGNRPVLE--------DISLSVEK----------------------GEITALIGPNGAGKSTLLKA 49 (254)
T ss_pred EEEEeeeE----EEECCEeeee--------ccEEEEcC----------------------CcEEEEECCCCCCHHHHHHH
Confidence 34455555 5698656755 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhh-hhccceeEecccC--CCCCcceEEEEEEec----cccCC-CCccc
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKI-RANKLSVLMHKSD--QVGGVSRCSVAIHFA----QIIDK-PNEEY 225 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~l-r~~~i~~l~q~~~--~~~~~~~~eV~~~~~----~~~~~-~~~~~ 225 (388)
|+ |++ +|.+|++.+.+. ..... ...+||||||... .-.++++.++..... .++.. ...+.
T Consensus 50 iL----Gll-~p~~G~i~~~g~-------~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~ 117 (254)
T COG1121 50 IL----GLL-KPSSGEIKIFGK-------PVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK 117 (254)
T ss_pred Hh----CCC-cCCcceEEEccc-------cccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHH
Confidence 99 999 788999766543 32222 2356999999753 334556665443211 11111 11111
Q ss_pred cccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhh
Q psy14062 226 EIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKL 300 (388)
Q Consensus 226 ~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~ 300 (388)
+.+. ..++..++....++....|||||+||+.|||||+. +|++||||||++++ .++..+|+++++++.
T Consensus 118 ~~v~-~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~------~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 118 EKVD-EALERVGMEDLRDRQIGELSGGQKQRVLLARALAQ------NPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred HHHH-HHHHHcCchhhhCCcccccCcHHHHHHHHHHHhcc------CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 1111 23444455566789999999999999999999999 99999999999999 888999999999965
Q ss_pred hHHHHHHHhHHHHHHHHHHHH
Q psy14062 301 TRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 301 ~~ii~vtH~l~~l~~~~d~~~ 321 (388)
+|++||||+..+..++|++.
T Consensus 191 -tIl~vtHDL~~v~~~~D~vi 210 (254)
T COG1121 191 -TVLMVTHDLGLVMAYFDRVI 210 (254)
T ss_pred -EEEEEeCCcHHhHhhCCEEE
Confidence 59999999999999988753
No 14
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.4e-33 Score=255.50 Aligned_cols=206 Identities=15% Similarity=0.125 Sum_probs=151.7
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+++++ +.|++..... .+|++|||+|.+ |++++|+|+||||||||.|
T Consensus 2 ~~l~v~nl~----~~y~~~~~~~----~~l~~VS~~i~~----------------------Ge~lgivGeSGsGKSTL~r 51 (252)
T COG1124 2 TLLSVRNLS----IVYGGGKFAF----HALNNVSLEIER----------------------GETLGIVGESGSGKSTLAR 51 (252)
T ss_pred ceEEEeceE----EEecCCcchh----hhhcceeEEecC----------------------CCEEEEEcCCCCCHHHHHH
Confidence 356778888 8898776321 356799999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccC--CCCCcceEEEEEEeccccCCCCccccccCC
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD--QVGGVSRCSVAIHFAQIIDKPNEEYEIIPG 230 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~--~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~ 230 (388)
+|+ |+. ++.+|++.+.|....-.. ....+.+.|.+|||+|. +.|..++.++.......++.+..... +.
T Consensus 52 ~l~----Gl~-~p~~G~I~~~G~~~~~~~--~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~-i~- 122 (252)
T COG1124 52 LLA----GLE-KPSSGSILLDGKPLAPKK--RAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR-IA- 122 (252)
T ss_pred HHh----ccc-CCCCceEEECCcccCccc--cchhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHH-HH-
Confidence 999 999 778999888875443211 11245567999999975 34555544332221111111111111 11
Q ss_pred ceEEEEEE-eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHH
Q psy14062 231 TDLEIART-AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQ 304 (388)
Q Consensus 231 ~~l~~~r~-~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii 304 (388)
..+...++ ..+..+.+..|||||+||++|||||.. +|++||+|||||+| .+|+.++.+++++...+++
T Consensus 123 ~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~------~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l 196 (252)
T COG1124 123 ELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIP------EPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYL 196 (252)
T ss_pred HHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhcc------CCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEE
Confidence 11111122 235578899999999999999999999 99999999999999 8899999999998777799
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q psy14062 305 LVETDLKALEPELRKAVNF 323 (388)
Q Consensus 305 ~vtH~l~~l~~~~d~~~~y 323 (388)
+||||+..++..|||+.-.
T Consensus 197 ~IsHdl~~v~~~cdRi~Vm 215 (252)
T COG1124 197 FISHDLALVEHMCDRIAVM 215 (252)
T ss_pred EEeCcHHHHHHHhhheeee
Confidence 9999999999999996544
No 15
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.97 E-value=2.2e-33 Score=246.26 Aligned_cols=192 Identities=18% Similarity=0.225 Sum_probs=153.3
Q ss_pred EEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC
Q psy14062 86 KSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN 165 (388)
Q Consensus 86 ksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn 165 (388)
|.|++-+ .||+||||+|++ |+|+-|+||||||||||||+|+ +.. .+
T Consensus 9 k~Y~~g~-------~aL~~vs~~i~~----------------------Gef~fl~GpSGAGKSTllkLi~----~~e-~p 54 (223)
T COG2884 9 KAYPGGR-------EALRDVSFHIPK----------------------GEFVFLTGPSGAGKSTLLKLIY----GEE-RP 54 (223)
T ss_pred hhcCCCc-------hhhhCceEeecC----------------------ceEEEEECCCCCCHHHHHHHHH----hhh-cC
Confidence 7786543 135599999999 9999999999999999999999 888 66
Q ss_pred CCCcceeehhhhhhcCc-cchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCC
Q psy14062 166 GSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNS 244 (388)
Q Consensus 166 gSGKs~i~da~i~vlg~-~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~ 244 (388)
.+|++.++|.++.-+.. +..-+| ++||+|||+..+.+..++.++..+...+.+.....+.......+.+.++..+.+.
T Consensus 55 t~G~i~~~~~dl~~l~~~~iP~LR-R~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~ 133 (223)
T COG2884 55 TRGKILVNGHDLSRLKGREIPFLR-RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARA 133 (223)
T ss_pred CCceEEECCeecccccccccchhh-heeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhc
Confidence 79999998877654432 333355 5699999999999888888766555455555544433322335566677777778
Q ss_pred CeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHH
Q psy14062 245 SYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRK 319 (388)
Q Consensus 245 ~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~ 319 (388)
-+..||||++||++||||+.. +|.+||.||||.+| .+|+.++.++...+.+ |++.|||.+.+.+...+
T Consensus 134 lP~~LSGGEQQRvaIARAiV~------~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtT-Vl~ATHd~~lv~~~~~r 206 (223)
T COG2884 134 LPSQLSGGEQQRVAIARAIVN------QPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT-VLMATHDLELVNRMRHR 206 (223)
T ss_pred CccccCchHHHHHHHHHHHcc------CCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcE-EEEEeccHHHHHhccCc
Confidence 899999999999999999999 99999999999999 7888899888887764 99999999988876444
No 16
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=6.5e-34 Score=259.42 Aligned_cols=202 Identities=21% Similarity=0.268 Sum_probs=162.3
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+.+...+++ |+||+.++++ ||||++.+ |++++||||||||||||++
T Consensus 3 ~lL~v~~l~----k~FGGl~Al~--------~Vsl~v~~----------------------Gei~~LIGPNGAGKTTlfN 48 (250)
T COG0411 3 PLLEVRGLS----KRFGGLTAVN--------DVSLEVRP----------------------GEIVGLIGPNGAGKTTLFN 48 (250)
T ss_pred ceeeeccce----eecCCEEEEe--------ceeEEEcC----------------------CeEEEEECCCCCCceeeee
Confidence 456778888 9999998876 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEec-------cccCCCC---
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFA-------QIIDKPN--- 222 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~-------~~~~~~~--- 222 (388)
+|+ |++ +|++|++.+.|.++. +.++.+..+..++-.||.+.+|+.+++.++.+.-. .......
T Consensus 49 lit----G~~-~P~~G~v~~~G~~it--~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~ 121 (250)
T COG0411 49 LIT----GFY-KPSSGTVIFRGRDIT--GLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARK 121 (250)
T ss_pred eec----ccc-cCCCceEEECCcccC--CCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchh
Confidence 999 999 888999999998765 44555555567888999999999999876543211 0001100
Q ss_pred ccccc--cCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHH
Q psy14062 223 EEYEI--IPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEE 295 (388)
Q Consensus 223 ~~~~~--~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el 295 (388)
...+. .....++..++..+.+.....||+|++++++||++|+. +|++|+||||.++| +++.+.+.++
T Consensus 122 ~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~------~P~lLLLDEPaAGln~~e~~~l~~~i~~i 195 (250)
T COG0411 122 EEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALAT------QPKLLLLDEPAAGLNPEETEELAELIREL 195 (250)
T ss_pred hHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhc------CCCEEEecCccCCCCHHHHHHHHHHHHHH
Confidence 00000 11134556667777788999999999999999999999 99999999999999 7888899999
Q ss_pred HHHhhhHHHHHHHhHHHHHHHHHHHH
Q psy14062 296 RTEKLTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 296 ~~e~~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
+++...+|++|+|||+.+..+||++.
T Consensus 196 ~~~~g~tillIEHdM~~Vm~l~dri~ 221 (250)
T COG0411 196 RDRGGVTILLIEHDMKLVMGLADRIV 221 (250)
T ss_pred HhcCCcEEEEEEeccHHHhhhccEEE
Confidence 98664569999999999999999864
No 17
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.5e-32 Score=257.13 Aligned_cols=195 Identities=16% Similarity=0.223 Sum_probs=149.0
Q ss_pred EEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC
Q psy14062 86 KSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN 165 (388)
Q Consensus 86 ksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn 165 (388)
|.|+...++. ||||+|+. |+.+|++||||||||||||+|+ |+. .+
T Consensus 10 ~~~~~~~a~~--------di~l~i~~----------------------Ge~vaLlGpSGaGKsTlLRiIA----GLe-~p 54 (345)
T COG1118 10 KRFGAFGALD--------DISLDIKS----------------------GELVALLGPSGAGKSTLLRIIA----GLE-TP 54 (345)
T ss_pred hhcccccccc--------cceeeecC----------------------CcEEEEECCCCCcHHHHHHHHh----CcC-CC
Confidence 6777766654 99999999 9999999999999999999999 999 55
Q ss_pred CCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEE-EeccccCCCCc-cccccCCceEEEEEEeeeCC
Q psy14062 166 GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAI-HFAQIIDKPNE-EYEIIPGTDLEIARTAFYDN 243 (388)
Q Consensus 166 gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~-~~~~~~~~~~~-~~~~~~~~~l~~~r~~~~~~ 243 (388)
.+|.+.+.|..++.... ...|.++||+|||+..+|+.++++++.. .+.......+. .........+.+..+....+
T Consensus 55 ~~G~I~~~~~~l~D~~~--~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ 132 (345)
T COG1118 55 DAGRIRLNGRVLFDVSN--LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD 132 (345)
T ss_pred CCceEEECCEeccchhc--cchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhh
Confidence 69999888875442221 2356778999999999999999986544 33211111111 11111112355556666778
Q ss_pred CCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHH
Q psy14062 244 SSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELR 318 (388)
Q Consensus 244 ~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d 318 (388)
+++.+|||||+||+++||||+. .|++||||||+.+| .++...+.++.++...+.++||||.+++.+.+|
T Consensus 133 ryP~QLSGGQrQRVALARALA~------eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~lad 206 (345)
T COG1118 133 RYPAQLSGGQRQRVALARALAV------EPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELAD 206 (345)
T ss_pred cCchhcChHHHHHHHHHHHhhc------CCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcc
Confidence 8999999999999999999999 99999999999999 555556666666644468999999999999999
Q ss_pred HHHHH
Q psy14062 319 KAVNF 323 (388)
Q Consensus 319 ~~~~y 323 (388)
++...
T Consensus 207 rvvvl 211 (345)
T COG1118 207 RVVVL 211 (345)
T ss_pred eEEEe
Confidence 87544
No 18
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=2.6e-33 Score=247.53 Aligned_cols=200 Identities=19% Similarity=0.248 Sum_probs=156.0
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.|...++. |+|+.+.++. +|||+|.+ |++++++|||||||||.+.+
T Consensus 4 ~L~a~~l~----K~y~kr~Vv~--------~Vsl~v~~----------------------GEiVGLLGPNGAGKTT~Fym 49 (243)
T COG1137 4 TLVAENLA----KSYKKRKVVN--------DVSLEVNS----------------------GEIVGLLGPNGAGKTTTFYM 49 (243)
T ss_pred EEEehhhh----HhhCCeeeee--------eeeEEEcC----------------------CcEEEEECCCCCCceeEEEE
Confidence 45666777 9999999866 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccccc--CCc
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEII--PGT 231 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~--~~~ 231 (388)
+. |++ ++++|++.++|.++..+.. ..-.+..+||++|+++.|..+++.++......+........+.. -..
T Consensus 50 i~----Glv-~~d~G~i~ld~~diT~lPm--~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~ 122 (243)
T COG1137 50 IV----GLV-RPDSGKILLDDEDITKLPM--HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDA 122 (243)
T ss_pred EE----EEE-ecCCceEEECCcccccCCh--HHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHH
Confidence 99 999 7889999999887764322 22223468999999999999998765433222222111100000 011
Q ss_pred eEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHH
Q psy14062 232 DLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLV 306 (388)
Q Consensus 232 ~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~v 306 (388)
.+.-+.+....+++.++||||+++|++|||+|+. +|+|++||||++++ .+|-.++..++..+.. |++.
T Consensus 123 LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~------~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiG-vLIT 195 (243)
T COG1137 123 LLEEFHITHLRDSKAYSLSGGERRRVEIARALAA------NPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIG-VLIT 195 (243)
T ss_pred HHHHhchHHHhcCcccccccchHHHHHHHHHHhc------CCCEEEecCCccCCCchhHHHHHHHHHHHHhCCce-EEEc
Confidence 2333344455678899999999999999999999 99999999999998 7888899999988876 8999
Q ss_pred HHhHHHHHHHHHHHH
Q psy14062 307 ETDLKALEPELRKAV 321 (388)
Q Consensus 307 tH~l~~l~~~~d~~~ 321 (388)
.|+..+.-..|||+.
T Consensus 196 DHNVREtL~i~dRaY 210 (243)
T COG1137 196 DHNVRETLDICDRAY 210 (243)
T ss_pred cccHHHHHhhhheEE
Confidence 999999999999874
No 19
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=3.6e-32 Score=246.25 Aligned_cols=201 Identities=18% Similarity=0.214 Sum_probs=157.7
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ..|+..++|. +|||++.+ |++++|+||||+||||||+
T Consensus 2 ~mL~v~~l~----~~YG~~~~L~--------gvsl~v~~----------------------Geiv~llG~NGaGKTTlLk 47 (237)
T COG0410 2 PMLEVENLS----AGYGKIQALR--------GVSLEVER----------------------GEIVALLGRNGAGKTTLLK 47 (237)
T ss_pred CceeEEeEe----ecccceeEEe--------eeeeEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 467788888 7899888866 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCce
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~ 232 (388)
+|+ |++ ++.+|++.+.|.++. +.++...-+..+++|||....||.+|+.++...-...... ...........
T Consensus 48 ti~----Gl~-~~~~G~I~~~G~dit--~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v 119 (237)
T COG0410 48 TIM----GLV-RPRSGRIIFDGEDIT--GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEV 119 (237)
T ss_pred HHh----CCC-CCCCeeEEECCeecC--CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHH
Confidence 999 999 777999999988775 4444444456799999999999999998775432111111 00000000001
Q ss_pred EEE-EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHH
Q psy14062 233 LEI-ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLV 306 (388)
Q Consensus 233 l~~-~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~v 306 (388)
+++ =++..+.++....|||||+|.++|||||.. +|++|+||||+.+| ++|...+++++++...+|++|
T Consensus 120 ~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~------~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLV 193 (237)
T COG0410 120 YELFPRLKERRNQRAGTLSGGEQQMLAIARALMS------RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLV 193 (237)
T ss_pred HHHChhHHHHhcCcccCCChHHHHHHHHHHHHhc------CCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 111 134455678899999999999999999999 99999999999999 889999999997744569999
Q ss_pred HHhHHHHHHHHHHHH
Q psy14062 307 ETDLKALEPELRKAV 321 (388)
Q Consensus 307 tH~l~~l~~~~d~~~ 321 (388)
+++...+.+.+|++.
T Consensus 194 EQn~~~Al~iaDr~y 208 (237)
T COG0410 194 EQNARFALEIADRGY 208 (237)
T ss_pred eccHHHHHHhhCEEE
Confidence 999999999998753
No 20
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.5e-33 Score=247.91 Aligned_cols=201 Identities=17% Similarity=0.216 Sum_probs=158.6
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.++. |+|++.+ .|++||||++.. |++++|+|||||||||+||+
T Consensus 1 Ml~v~~l~----K~y~~~v-------~AvrdVSF~ae~----------------------Gei~GlLG~NGAGKTT~LRm 47 (245)
T COG4555 1 MLEVTDLT----KSYGSKV-------QAVRDVSFEAEE----------------------GEITGLLGENGAGKTTLLRM 47 (245)
T ss_pred Ceeeeehh----hhccCHH-------hhhhheeEEecc----------------------ceEEEEEcCCCCCchhHHHH
Confidence 35667777 9999744 256699999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceE
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l 233 (388)
|+ +++ .|++|++.+++.+.. .++...| ++||+++....++..++..++..+|..+++..............
T Consensus 48 ia----tlL-~P~~G~v~idg~d~~---~~p~~vr-r~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~ 118 (245)
T COG4555 48 IA----TLL-IPDSGKVTIDGVDTV---RDPSFVR-RKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118 (245)
T ss_pred HH----Hhc-cCCCceEEEeecccc---cChHHHh-hhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 99 999 667999988876542 2233344 46999997777778889989988888887765442221111112
Q ss_pred EEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 234 ~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH 308 (388)
....+....++.+..+|.|++|++.||+||.+ +|.++|+|||+++| ..+.+.+.++++++.. ++++||
T Consensus 119 k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh------~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~-viFSSH 191 (245)
T COG4555 119 KRLQLLEYLDRRVGEFSTGMKQKVAIARALVH------DPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRA-VIFSSH 191 (245)
T ss_pred HHhChHHHHHHHHhhhchhhHHHHHHHHHHhc------CCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcE-EEEecc
Confidence 22233344577889999999999999999999 99999999999999 6677788888888876 999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy14062 309 DLKALEPELRKAVNF 323 (388)
Q Consensus 309 ~l~~l~~~~d~~~~y 323 (388)
.|++++..||++.-.
T Consensus 192 ~m~EvealCDrvivl 206 (245)
T COG4555 192 IMQEVEALCDRVIVL 206 (245)
T ss_pred cHHHHHHhhheEEEE
Confidence 999999999987544
No 21
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.8e-32 Score=253.50 Aligned_cols=194 Identities=23% Similarity=0.275 Sum_probs=144.1
Q ss_pred EEecCc-eeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcC
Q psy14062 86 KSYAGY-VTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGP 164 (388)
Q Consensus 86 ksy~~~-~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGp 164 (388)
.+|.+. .+ |+++||+|.+ |++++|+||||||||||+++++ |++ +
T Consensus 11 ~~y~~~~~~--------l~~v~~~i~~----------------------Ge~~~i~G~nGsGKSTL~~~l~----GLl-~ 55 (235)
T COG1122 11 FRYPGRKAA--------LKDVSLEIEK----------------------GERVLLIGPNGSGKSTLLKLLN----GLL-K 55 (235)
T ss_pred EEcCCCcee--------eeeeEEEECC----------------------CCEEEEECCCCCCHHHHHHHHc----CcC-c
Confidence 457665 44 4599999999 9999999999999999999999 999 7
Q ss_pred CCCCcceeehhhhhhcCccchhhhhccceeEecccCCC-CCcce-EEEEEEeccccCCCCccccccCCceEEEEEEeeeC
Q psy14062 165 NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQV-GGVSR-CSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYD 242 (388)
Q Consensus 165 ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~-~~~~~-~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~ 242 (388)
+.+|++.+.|..+.. ......+| +++|+|||+|... ...++ .++.+...+. +....+........+...++....
T Consensus 56 p~~G~v~~~g~~~~~-~~~~~~~~-~~vG~VfQnpd~q~~~~tV~~evafg~~n~-g~~~~e~~~rv~~~l~~vgl~~~~ 132 (235)
T COG1122 56 PTSGEVLVDGLDTSS-EKSLLELR-QKVGLVFQNPDDQLFGPTVEDEVAFGLENL-GLPREEIEERVAEALELVGLEELL 132 (235)
T ss_pred CCCCEEEECCeeccc-hhhHHHhh-cceEEEEECcccccccCcHHHHHhhchhhc-CCCHHHHHHHHHHHHHHcCchhhc
Confidence 789998776654431 01122334 5699999998632 22333 3455544332 222111111111233444555557
Q ss_pred CCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHH
Q psy14062 243 NSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPEL 317 (388)
Q Consensus 243 ~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~ 317 (388)
+++++.|||||+||++||.+|+. +|++|||||||++| ++++..+++++.++..+++++|||++.+..++
T Consensus 133 ~r~p~~LSGGqkqRvaIA~vLa~------~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~a 206 (235)
T COG1122 133 DRPPFNLSGGQKQRVAIAGVLAM------GPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYA 206 (235)
T ss_pred cCCccccCCcceeeHHhhHHHHc------CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhC
Confidence 89999999999999999999999 99999999999999 88999999999886556999999999999999
Q ss_pred HHHHHH
Q psy14062 318 RKAVNF 323 (388)
Q Consensus 318 d~~~~y 323 (388)
|++.-.
T Consensus 207 d~v~vl 212 (235)
T COG1122 207 DRVVVL 212 (235)
T ss_pred CEEEEE
Confidence 876543
No 22
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=1.8e-32 Score=264.08 Aligned_cols=196 Identities=20% Similarity=0.252 Sum_probs=155.3
Q ss_pred EEEEEEEeeceEEec-CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 75 LIITKIVAFNFKSYA-GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 75 l~i~~l~~~~fksy~-~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
+.+.+++ |+|+ ++.+|+ ||||+|.+ |+++||+||||||||||+|+
T Consensus 5 i~~~~l~----k~~~~~~~~l~--------~vs~~i~~----------------------Gei~gllG~NGAGKTTllk~ 50 (293)
T COG1131 5 IEVRNLT----KKYGGDKTALD--------GVSFEVEP----------------------GEIFGLLGPNGAGKTTLLKI 50 (293)
T ss_pred eeecceE----EEeCCCCEEEe--------ceeEEEcC----------------------CeEEEEECCCCCCHHHHHHH
Confidence 4556777 9999 688866 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCCce
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGTD 232 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~~ 232 (388)
|+ |++ .+.+|++.++|...+.. ....+ +.+||++|.+..++.+|+.++..++..+++..... ...+. ..
T Consensus 51 l~----gl~-~p~~G~i~i~G~~~~~~---~~~~~-~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~-~~ 120 (293)
T COG1131 51 LA----GLL-KPTSGEILVLGYDVVKE---PAKVR-RRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIE-EL 120 (293)
T ss_pred Hh----CCc-CCCceEEEEcCEeCccC---HHHHH-hheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHH-HH
Confidence 99 999 66899988877654321 12233 45999999999999999988777666666543211 11111 13
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++....+..+..||+||+||+.||.+|.. +|+++||||||++| .++.+.++++++++..+|+++|
T Consensus 121 l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~------~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvliss 194 (293)
T COG1131 121 LELFGLEDKANKKVRTLSGGMKQRLSIALALLH------DPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLST 194 (293)
T ss_pred HHHcCCchhhCcchhhcCHHHHHHHHHHHHHhc------CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 333344333367789999999999999999999 99999999999999 8888899999988744599999
Q ss_pred HhHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKA 320 (388)
Q Consensus 308 H~l~~l~~~~d~~ 320 (388)
|.+++++..||++
T Consensus 195 H~l~e~~~~~d~v 207 (293)
T COG1131 195 HILEEAEELCDRV 207 (293)
T ss_pred CcHHHHHHhCCEE
Confidence 9999999999854
No 23
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=3e-32 Score=255.49 Aligned_cols=188 Identities=16% Similarity=0.158 Sum_probs=153.9
Q ss_pred cccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhh
Q psy14062 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFV 179 (388)
Q Consensus 100 ~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~v 179 (388)
..+.|+||+|+. |++.+|+|-||||||||+|+++ .++ ++.+|++.+.|.++.-
T Consensus 42 vGv~~~sl~v~~----------------------GeIfViMGLSGSGKSTLvR~~N----rLi-ept~G~ilv~g~di~~ 94 (386)
T COG4175 42 VGVNDASLDVEE----------------------GEIFVIMGLSGSGKSTLVRLLN----RLI-EPTRGEILVDGKDIAK 94 (386)
T ss_pred EeeccceeeecC----------------------CeEEEEEecCCCCHHHHHHHHh----ccC-CCCCceEEECCcchhc
Confidence 347899999999 9999999999999999999999 899 8889999999988765
Q ss_pred cCcc-chhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHH
Q psy14062 180 FGYR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKE 258 (388)
Q Consensus 180 lg~~-~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~ 258 (388)
.... ...+|++++++|||+..++|..++.++..+-..+.+.+..+.+......+...++..|.++++.+|||||+||+-
T Consensus 95 ~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVG 174 (386)
T COG4175 95 LSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVG 174 (386)
T ss_pred CCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHH
Confidence 5543 456888999999999999999998876544333434433322222234566777888899999999999999999
Q ss_pred HHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 259 VAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 259 Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
+||||+. +|++||||||+|+| .++-+.+.++.++-..||+++|||++++.+..+++
T Consensus 175 LARAla~------~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rI 235 (386)
T COG4175 175 LARALAN------DPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRI 235 (386)
T ss_pred HHHHHcc------CCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceE
Confidence 9999999 99999999999999 55566666776666667999999999999987663
No 24
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.96 E-value=2.3e-32 Score=265.24 Aligned_cols=198 Identities=14% Similarity=0.212 Sum_probs=150.4
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ |+|++..+++ ||||+|.+ |++++|+||||||||||++
T Consensus 6 ~~i~i~~l~----k~~~~~~~l~--------~vsl~i~~----------------------Gei~gllGpNGaGKSTLl~ 51 (306)
T PRK13537 6 APIDFRNVE----KRYGDKLVVD--------GLSFHVQR----------------------GECFGLLGPNGAGKTTTLR 51 (306)
T ss_pred ceEEEEeEE----EEECCeEEEe--------cceEEEeC----------------------CcEEEEECCCCCCHHHHHH
Confidence 356677777 8898877755 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCce
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~ 232 (388)
+|+ |++ ++.+|++.++|..+.- ..... ++.++|++|++..++..++.++..++...++.............
T Consensus 52 ~l~----Gl~-~p~~G~v~i~G~~~~~---~~~~~-~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 122 (306)
T PRK13537 52 MLL----GLT-HPDAGSISLCGEPVPS---RARHA-RQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPL 122 (306)
T ss_pred HHh----cCC-CCCceEEEECCEeccc---chHHH-HhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999 999 7789998887654431 11122 35699999999888877877665444333322211111000112
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++..+.++.+..|||||+||++||++|.. +|+++||||||++| ..+...+.++++++. +|+++|
T Consensus 123 l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~------~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~-till~s 195 (306)
T PRK13537 123 LEFAKLENKADAKVGELSGGMKRRLTLARALVN------DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGK-TILLTT 195 (306)
T ss_pred HHHcCCchHhcCchhhCCHHHHHHHHHHHHHhC------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence 233344445577889999999999999999999 99999999999999 778888888876655 599999
Q ss_pred HhHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKA 320 (388)
Q Consensus 308 H~l~~l~~~~d~~ 320 (388)
|+++++++.||++
T Consensus 196 H~l~e~~~~~d~i 208 (306)
T PRK13537 196 HFMEEAERLCDRL 208 (306)
T ss_pred CCHHHHHHhCCEE
Confidence 9999999999876
No 25
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.96 E-value=3e-32 Score=267.43 Aligned_cols=202 Identities=14% Similarity=0.183 Sum_probs=147.2
Q ss_pred EEEEEEEeeceEEecC----ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 75 LIITKIVAFNFKSYAG----YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 75 l~i~~l~~~~fksy~~----~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
+.+.+++ |+|++ ..+ |+||||+|.+ |++++|+||||||||||
T Consensus 2 I~~~~ls----k~y~~~~~~~~~--------L~~vsl~i~~----------------------Gei~gIiG~sGaGKSTL 47 (343)
T TIGR02314 2 IKLSNIT----KVFHQGTKTIQA--------LNNVSLHVPA----------------------GQIYGVIGASGAGKSTL 47 (343)
T ss_pred EEEEEEE----EEECCCCcceEE--------EeeeEEEEcC----------------------CCEEEEECCCCCCHHHH
Confidence 4566666 78853 244 4599999999 99999999999999999
Q ss_pred HhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCC
Q psy14062 151 IDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPG 230 (388)
Q Consensus 151 l~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~ 230 (388)
+++|+ |++ ++.+|++.++|..+.-+........+++++|+||++.+++..++.++..+.....+...........
T Consensus 48 lr~I~----gl~-~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~ 122 (343)
T TIGR02314 48 IRCVN----LLE-RPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVT 122 (343)
T ss_pred HHHHh----cCC-CCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999 999 7789999888875542221111112356999999998887777655433221111111111000001
Q ss_pred ceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 231 TDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 231 ~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
..+...++..+.+.++..|||||+||+.||++|+. +|++||+||||++| ..+..++++++++...++++
T Consensus 123 e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~------~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiil 196 (343)
T TIGR02314 123 ELLALVGLGDKHDSYPSNLSGGQKQRVAIARALAS------NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILL 196 (343)
T ss_pred HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHh------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 12333344455678899999999999999999999 99999999999999 77888888887763335999
Q ss_pred HHHhHHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKAV 321 (388)
Q Consensus 306 vtH~l~~l~~~~d~~~ 321 (388)
+||+++.+.+.||++.
T Consensus 197 iTH~~~~v~~~~d~v~ 212 (343)
T TIGR02314 197 ITHEMDVVKRICDCVA 212 (343)
T ss_pred EeCCHHHHHHhCCEEE
Confidence 9999999999999874
No 26
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=3.4e-31 Score=228.80 Aligned_cols=187 Identities=15% Similarity=0.182 Sum_probs=152.7
Q ss_pred ccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhc
Q psy14062 101 EVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVF 180 (388)
Q Consensus 101 ~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vl 180 (388)
.|++|+|.|.+ |+.++|||||||||||||-.++ |+- .+.||.+.+.|..+.-+
T Consensus 25 IL~~V~L~v~~----------------------Ge~vaiVG~SGSGKSTLl~vlA----GLd-~~ssGeV~l~G~~L~~l 77 (228)
T COG4181 25 ILKGVELVVKR----------------------GETVAIVGPSGSGKSTLLAVLA----GLD-DPSSGEVRLLGQPLHKL 77 (228)
T ss_pred EeecceEEecC----------------------CceEEEEcCCCCcHHhHHHHHh----cCC-CCCCceEEEcCcchhhc
Confidence 45699999999 9999999999999999999999 998 77899999999999888
Q ss_pred Cccc-hhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHH
Q psy14062 181 GYRA-SKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEV 259 (388)
Q Consensus 181 g~~~-~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~I 259 (388)
+++. ..+|++++|+|||...+.|.++..++......+.+............++...++..+...++.+||||++||++|
T Consensus 78 dEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAi 157 (228)
T COG4181 78 DEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVAL 157 (228)
T ss_pred CHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHH
Confidence 8765 458999999999999999999988766555444332211111111234444566666778899999999999999
Q ss_pred HHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHH
Q psy14062 260 AKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 260 a~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
||+|+. .|++|+.||||.+| +.|++++..+.++..+++++||||...+.+ |+|..
T Consensus 158 ARAfa~------~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~ 217 (228)
T COG4181 158 ARAFAG------RPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQL 217 (228)
T ss_pred HHHhcC------CCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhhee
Confidence 999999 99999999999999 889999999988887889999999876654 55543
No 27
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.96 E-value=1.1e-31 Score=263.70 Aligned_cols=198 Identities=18% Similarity=0.263 Sum_probs=149.3
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ |+|++..+|+ ||||+|.+ |++++|+||||||||||+++
T Consensus 41 ~i~i~nl~----k~y~~~~~l~--------~is~~i~~----------------------Gei~gLlGpNGaGKSTLl~~ 86 (340)
T PRK13536 41 AIDLAGVS----KSYGDKAVVN--------GLSFTVAS----------------------GECFGLLGPNGAGKSTIARM 86 (340)
T ss_pred eEEEEEEE----EEECCEEEEe--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 45566666 8899877765 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceE
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l 233 (388)
|+ |++ ++.+|++.++|..+.- . ....++.++++||++..++..++.++..++...++.............+
T Consensus 87 L~----Gl~-~p~~G~i~i~G~~~~~---~-~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll 157 (340)
T PRK13536 87 IL----GMT-SPDAGKITVLGVPVPA---R-ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLL 157 (340)
T ss_pred HH----cCC-CCCceEEEECCEECCc---c-hHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99 999 7789998887765431 1 1122356999999988877777765543333222221111000001123
Q ss_pred EEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 234 ~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH 308 (388)
...++....+..+..|||||+||+.||++|+. +|+++||||||++| .++.+.+.++++++. +|+++||
T Consensus 158 ~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~------~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~-tilisSH 230 (340)
T PRK13536 158 EFARLESKADARVSDLSGGMKRRLTLARALIN------DPQLLILDEPTTGLDPHARHLIWERLRSLLARGK-TILLTTH 230 (340)
T ss_pred HHcCCchhhCCChhhCCHHHHHHHHHHHHHhc------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEECC
Confidence 33344444577889999999999999999999 99999999999999 778888888876655 5999999
Q ss_pred hHHHHHHHHHHHH
Q psy14062 309 DLKALEPELRKAV 321 (388)
Q Consensus 309 ~l~~l~~~~d~~~ 321 (388)
+++++++.||++.
T Consensus 231 ~l~e~~~~~d~i~ 243 (340)
T PRK13536 231 FMEEAERLCDRLC 243 (340)
T ss_pred CHHHHHHhCCEEE
Confidence 9999999998763
No 28
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.3e-31 Score=264.07 Aligned_cols=198 Identities=14% Similarity=0.204 Sum_probs=149.7
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.+++ ++|++..+++ ||||+|.+ |++++|+|||||||||||++
T Consensus 6 ~l~~~~l~----~~~~~~~~l~--------~isl~i~~----------------------Ge~~~llGpsGsGKSTLLr~ 51 (351)
T PRK11432 6 FVVLKNIT----KRFGSNTVID--------NLNLTIKQ----------------------GTMVTLLGPSGCGKTTVLRL 51 (351)
T ss_pred EEEEEeEE----EEECCeEEEe--------eeEEEEcC----------------------CCEEEEECCCCCcHHHHHHH
Confidence 56677777 8898766654 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cccCCce
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EIIPGTD 232 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~~~~ 232 (388)
|+ |+. ++.+|++.++|..+. ... ...++++++||++.++|.+++.++..+............ ..+ ...
T Consensus 52 Ia----Gl~-~p~~G~I~~~g~~i~--~~~---~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v-~~~ 120 (351)
T PRK11432 52 VA----GLE-KPTEGQIFIDGEDVT--HRS---IQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRV-KEA 120 (351)
T ss_pred HH----CCC-CCCceEEEECCEECC--CCC---HHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHH-HHH
Confidence 99 999 888999888876543 111 233579999999999998887655432211111111110 111 112
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++..+.++.+..|||||+||++||++|+. +|++||||||+++| +++...++++.++...+++++|
T Consensus 121 l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~------~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vT 194 (351)
T PRK11432 121 LELVDLAGFEDRYVDQISGGQQQRVALARALIL------KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVT 194 (351)
T ss_pred HHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 233344445678899999999999999999999 99999999999999 7777788877766444699999
Q ss_pred HhHHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAVN 322 (388)
Q Consensus 308 H~l~~l~~~~d~~~~ 322 (388)
|+++++...+|++.-
T Consensus 195 Hd~~e~~~laD~i~v 209 (351)
T PRK11432 195 HDQSEAFAVSDTVIV 209 (351)
T ss_pred CCHHHHHHhCCEEEE
Confidence 999999999887633
No 29
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.96 E-value=9.7e-32 Score=247.96 Aligned_cols=199 Identities=16% Similarity=0.225 Sum_probs=140.4
Q ss_pred EEEEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 75 LIITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 75 l~i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+.+.+++ ++|++ +.+++ ++||+|.+ |++++|+||||||||||++
T Consensus 2 l~~~~l~----~~~~~~~~~il~--------~isl~i~~----------------------Ge~~~i~G~nGsGKSTLl~ 47 (216)
T TIGR00960 2 IRFEQVS----KAYPGGHQPALD--------NLNFHITK----------------------GEMVFLVGHSGAGKSTFLK 47 (216)
T ss_pred eEEEEEE----EEecCCCeeEEE--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 4556666 67864 34544 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCc-cccccCCc
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNE-EYEIIPGT 231 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~-~~~~~~~~ 231 (388)
+|+ |++ ++.+|++.+.|..+..........+++.+++++|++..++..++.++........+.... ....+. .
T Consensus 48 ~l~----Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-~ 121 (216)
T TIGR00960 48 LIL----GIE-KPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVS-A 121 (216)
T ss_pred HHh----CCC-CCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHH-H
Confidence 999 998 777999888776543221111111235699999998877766655433211111111100 001111 1
Q ss_pred eEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHH
Q psy14062 232 DLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLV 306 (388)
Q Consensus 232 ~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~v 306 (388)
.+...++....++.+..|||||+||+.+|++|+. +|+++||||||++| +.+...+.++++++. +++++
T Consensus 122 ~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-tii~v 194 (216)
T TIGR00960 122 ALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVH------KPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGT-TVLVA 194 (216)
T ss_pred HHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCC-EEEEE
Confidence 2222233334467788999999999999999999 99999999999999 677778877766544 59999
Q ss_pred HHhHHHHHHHHHHH
Q psy14062 307 ETDLKALEPELRKA 320 (388)
Q Consensus 307 tH~l~~l~~~~d~~ 320 (388)
||+++.+...||++
T Consensus 195 sH~~~~~~~~~d~i 208 (216)
T TIGR00960 195 THDINLVETYRHRT 208 (216)
T ss_pred eCCHHHHHHhCCEE
Confidence 99999999888865
No 30
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8e-32 Score=266.13 Aligned_cols=198 Identities=14% Similarity=0.136 Sum_probs=148.8
Q ss_pred cEEEEEEEeeceEEe-cCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSY-AGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy-~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
++.+.+++ ++| ++..+|+ ||||+|.+ |++++|+|||||||||||+
T Consensus 3 ~l~i~~l~----~~~~~~~~~l~--------~vsl~i~~----------------------Ge~~~llG~sGsGKSTLLr 48 (356)
T PRK11650 3 GLKLQAVR----KSYDGKTQVIK--------GIDLDVAD----------------------GEFIVLVGPSGCGKSTLLR 48 (356)
T ss_pred EEEEEeEE----EEeCCCCEEEe--------eeeEEEcC----------------------CCEEEEECCCCCcHHHHHH
Confidence 45667777 889 6666654 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCce
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~ 232 (388)
+|+ |+. ++.+|++.++|..+.- .. ...+.++|+||++.++|.+++.++..+.....+.............
T Consensus 49 ~ia----Gl~-~p~~G~I~~~g~~i~~--~~---~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~ 118 (356)
T PRK11650 49 MVA----GLE-RITSGEIWIGGRVVNE--LE---PADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEA 118 (356)
T ss_pred HHH----CCC-CCCceEEEECCEECCC--CC---HHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHH
Confidence 999 998 7889998888765431 11 1235799999999999988877654322111111111100000112
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++..+.++.+..|||||+||++||++|+. +|++||||||+++| +.+...++++.++...+++++|
T Consensus 119 l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~------~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vT 192 (356)
T PRK11650 119 ARILELEPLLDRKPRELSGGQRQRVAMGRAIVR------EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVT 192 (356)
T ss_pred HHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 333344455678899999999999999999999 99999999999999 6777788877766344699999
Q ss_pred HhHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAV 321 (388)
Q Consensus 308 H~l~~l~~~~d~~~ 321 (388)
|+++++...+|++.
T Consensus 193 Hd~~ea~~l~D~i~ 206 (356)
T PRK11650 193 HDQVEAMTLADRVV 206 (356)
T ss_pred CCHHHHHHhCCEEE
Confidence 99999999998763
No 31
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.96 E-value=1.7e-31 Score=265.16 Aligned_cols=199 Identities=13% Similarity=0.193 Sum_probs=150.4
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|++..+++ ++||+|.+ |++++|+|||||||||||+
T Consensus 13 ~~L~l~~l~----~~~~~~~~l~--------~vsl~i~~----------------------Ge~~~LlGpsGsGKSTLLr 58 (375)
T PRK09452 13 PLVELRGIS----KSFDGKEVIS--------NLDLTINN----------------------GEFLTLLGPSGCGKTTVLR 58 (375)
T ss_pred ceEEEEEEE----EEECCeEEEe--------eeEEEEeC----------------------CCEEEEECCCCCcHHHHHH
Confidence 467777787 8898766655 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCce
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~ 232 (388)
+|+ |+. ++.+|++.+.|..+. +.. ...+.++|+||++.++|.+++.++..+.....+.............
T Consensus 59 ~Ia----Gl~-~p~~G~I~~~g~~i~--~~~---~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~ 128 (375)
T PRK09452 59 LIA----GFE-TPDSGRIMLDGQDIT--HVP---AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEA 128 (375)
T ss_pred HHh----CCC-CCCceEEEECCEECC--CCC---HHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 999 999 778999988876543 111 1235699999999999998887654322111111111100001113
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++....++.+..|||||+||++||++|+. +|++||||||+++| +.+...|+++.++...+++++|
T Consensus 129 l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~------~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vT 202 (375)
T PRK09452 129 LRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVN------KPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVT 202 (375)
T ss_pred HHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 333444455678899999999999999999999 99999999999999 6677788777766444699999
Q ss_pred HhHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAV 321 (388)
Q Consensus 308 H~l~~l~~~~d~~~ 321 (388)
|+..++...+|++.
T Consensus 203 Hd~~ea~~laDri~ 216 (375)
T PRK09452 203 HDQEEALTMSDRIV 216 (375)
T ss_pred CCHHHHHHhCCEEE
Confidence 99999999988763
No 32
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.96 E-value=2e-31 Score=263.06 Aligned_cols=198 Identities=15% Similarity=0.166 Sum_probs=149.7
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|++..+++ ||||++.+ |++++|+|||||||||||++
T Consensus 4 ~l~~~~l~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~l~GpsGsGKSTLLr~ 49 (353)
T TIGR03265 4 YLSIDNIR----KRFGAFTALK--------DISLSVKK----------------------GEFVCLLGPSGCGKTTLLRI 49 (353)
T ss_pred EEEEEEEE----EEeCCeEEEE--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 56777777 8898776655 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceE
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l 233 (388)
|+ |+. ++.+|++.++|..+.- .. ...+.++|+||++.+||.+++.++..+.....+.............+
T Consensus 50 ia----Gl~-~p~~G~I~i~g~~~~~--~~---~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l 119 (353)
T TIGR03265 50 IA----GLE-RQTAGTIYQGGRDITR--LP---PQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELL 119 (353)
T ss_pred HH----CCC-CCCceEEEECCEECCC--CC---HHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 99 998 7789999888765421 11 12356999999999999888776543221111111111000011233
Q ss_pred EEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 234 ~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH 308 (388)
...++....++.+..|||||+||+++|++|+. +|+++|||||+++| +.+...++++.++...+++++||
T Consensus 120 ~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~------~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTH 193 (353)
T TIGR03265 120 DLVGLPGSERKYPGQLSGGQQQRVALARALAT------SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTH 193 (353)
T ss_pred HHcCCCchhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 33444455678899999999999999999999 99999999999999 67777887777664446999999
Q ss_pred hHHHHHHHHHHHH
Q psy14062 309 DLKALEPELRKAV 321 (388)
Q Consensus 309 ~l~~l~~~~d~~~ 321 (388)
+++++...+|++.
T Consensus 194 d~~ea~~l~d~i~ 206 (353)
T TIGR03265 194 DQEEALSMADRIV 206 (353)
T ss_pred CHHHHHHhCCEEE
Confidence 9999999998763
No 33
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2e-31 Score=249.05 Aligned_cols=201 Identities=18% Similarity=0.192 Sum_probs=141.4
Q ss_pred EEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 77 i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.+++ ++|++..+++ |+||+|.+ |++++|+||||||||||+++|+
T Consensus 3 ~~~l~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~l~- 47 (235)
T cd03261 3 LRGLT----KSFGGRTVLK--------GVDLDVRR----------------------GEILAIIGPSGSGKSTLLRLIV- 47 (235)
T ss_pred EEEEE----EEECCEEEEe--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh-
Confidence 45555 6788766655 99999999 9999999999999999999999
Q ss_pred cccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccC-CCCcc-ccccCCceEE
Q psy14062 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIID-KPNEE-YEIIPGTDLE 234 (388)
Q Consensus 157 ~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~-~~~~~-~~~~~~~~l~ 234 (388)
|++ ++.+|++.+.+..+...........++.+++++|++..++..++.++......... ..... ...+. ..+.
T Consensus 48 ---G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-~~l~ 122 (235)
T cd03261 48 ---GLL-RPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVL-EKLE 122 (235)
T ss_pred ---CCC-CCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHH-HHHH
Confidence 998 77899988877544211110011223569999999887776666544322111110 01000 00000 1122
Q ss_pred EEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHh
Q psy14062 235 IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETD 309 (388)
Q Consensus 235 ~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~ 309 (388)
..++....++.+..|||||+||+.||++|+. +|+++||||||++| +.+...+.++.++...+|+++||+
T Consensus 123 ~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~ 196 (235)
T cd03261 123 AVGLRGAEDLYPAELSGGMKKRVALARALAL------DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHD 196 (235)
T ss_pred HcCCchhhcCChhhCCHHHHHHHHHHHHHhc------CCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 2233333467788999999999999999999 99999999999999 677778888776423359999999
Q ss_pred HHHHHHHHHHHHHH
Q psy14062 310 LKALEPELRKAVNF 323 (388)
Q Consensus 310 l~~l~~~~d~~~~y 323 (388)
++.+...||++...
T Consensus 197 ~~~~~~~~d~v~~l 210 (235)
T cd03261 197 LDTAFAIADRIAVL 210 (235)
T ss_pred HHHHHHhcCEEEEE
Confidence 99999999876443
No 34
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.8e-31 Score=262.22 Aligned_cols=199 Identities=15% Similarity=0.154 Sum_probs=148.6
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|++..++. ++||+|.+ |++++|+|||||||||||+
T Consensus 18 ~~l~l~~v~----~~~~~~~~l~--------~vsl~i~~----------------------Ge~~~llGpsGsGKSTLLr 63 (377)
T PRK11607 18 PLLEIRNLT----KSFDGQHAVD--------DVSLTIYK----------------------GEIFALLGASGCGKSTLLR 63 (377)
T ss_pred ceEEEEeEE----EEECCEEEEe--------eeEEEEcC----------------------CCEEEEECCCCCcHHHHHH
Confidence 457777777 8898766654 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCce
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~ 232 (388)
+|+ |+. ++.+|++.++|..+. ... ...+.++|+||++.+||.+++.++..+.....+.............
T Consensus 64 ~Ia----Gl~-~p~~G~I~i~g~~i~--~~~---~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~ 133 (377)
T PRK11607 64 MLA----GFE-QPTAGQIMLDGVDLS--HVP---PYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEM 133 (377)
T ss_pred HHh----CCC-CCCceEEEECCEECC--CCC---HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999 998 788999888776442 111 1235699999999999998887654322111111111110001123
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++..+.++++..|||||+||++||++|+. +|++||||||+++| +.+...+.++.++...+++++|
T Consensus 134 l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~------~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vT 207 (377)
T PRK11607 134 LGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK------RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVT 207 (377)
T ss_pred HHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 333444455678899999999999999999999 99999999999999 5566666666655334699999
Q ss_pred HhHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAV 321 (388)
Q Consensus 308 H~l~~l~~~~d~~~ 321 (388)
|+++++...+|++.
T Consensus 208 Hd~~ea~~laDri~ 221 (377)
T PRK11607 208 HDQEEAMTMAGRIA 221 (377)
T ss_pred CCHHHHHHhCCEEE
Confidence 99999999998764
No 35
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=3.2e-31 Score=240.77 Aligned_cols=198 Identities=18% Similarity=0.201 Sum_probs=161.6
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ |+||++++++ ||||++++ |++.+++|||||||||.+|+
T Consensus 2 ~L~ie~vt----K~Fg~k~av~--------~isf~v~~----------------------G~i~GllG~NGAGKTTtfRm 47 (300)
T COG4152 2 ALEIEGVT----KSFGDKKAVD--------NISFEVPP----------------------GEIFGLLGPNGAGKTTTFRM 47 (300)
T ss_pred ceEEecch----hccCceeeec--------ceeeeecC----------------------CeEEEeecCCCCCccchHHH
Confidence 46778888 9999999876 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceE
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l 233 (388)
|. |++ ++.+|++.|+|+.+. ..-..+|||+|....+++.+++.+...+|+.+.+.+..+...-...++
T Consensus 48 IL----gll-e~~~G~I~~~g~~~~-------~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wL 115 (300)
T COG4152 48 IL----GLL-EPTEGEITWNGGPLS-------QEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWL 115 (300)
T ss_pred Hh----ccC-CccCceEEEcCcchh-------hhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99 999 888999888776542 222346999999999999999888777777766654332211111233
Q ss_pred EEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 234 ~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH 308 (388)
..........+....||.|++|+..+..++.+ .|+++|||||+|+| +-+...+.++++++.+ |++++|
T Consensus 116 er~~i~~~~~~kIk~LSKGnqQKIQfisaviH------ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~Gat-IifSsH 188 (300)
T COG4152 116 ERLEIVGKKTKKIKELSKGNQQKIQFISAVIH------EPELLILDEPFSGLDPVNVELLKDAIFELKEEGAT-IIFSSH 188 (300)
T ss_pred HhccccccccchHHHhhhhhhHHHHHHHHHhc------CCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCE-EEEecc
Confidence 33344455677889999999999999999999 99999999999999 6666788899998875 999999
Q ss_pred hHHHHHHHHHHHHHHH
Q psy14062 309 DLKALEPELRKAVNFL 324 (388)
Q Consensus 309 ~l~~l~~~~d~~~~y~ 324 (388)
.|+.+++.||++.-..
T Consensus 189 ~Me~vEeLCD~llmL~ 204 (300)
T COG4152 189 RMEHVEELCDRLLMLK 204 (300)
T ss_pred hHHHHHHHhhhhheec
Confidence 9999999999986553
No 36
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.96 E-value=1.4e-31 Score=264.37 Aligned_cols=194 Identities=14% Similarity=0.176 Sum_probs=144.8
Q ss_pred EEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC
Q psy14062 86 KSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN 165 (388)
Q Consensus 86 ksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn 165 (388)
|+|+++.+++ |+||+|++ |++++|+|||||||||||++|+ |++ ++
T Consensus 1 ~~~~~~~~l~--------~vs~~i~~----------------------Gei~~l~G~sGsGKSTLLr~L~----Gl~-~p 45 (363)
T TIGR01186 1 KKTGGKKGVN--------DADLAIAK----------------------GEIFVIMGLSGSGKSTTVRMLN----RLI-EP 45 (363)
T ss_pred CccCCceeEE--------eeEEEEcC----------------------CCEEEEECCCCChHHHHHHHHh----CCC-CC
Confidence 4577766654 99999999 9999999999999999999999 999 88
Q ss_pred CCCcceeehhhhhhcCcc-chhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCCceEEEEEEeeeCC
Q psy14062 166 GSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGTDLEIARTAFYDN 243 (388)
Q Consensus 166 gSGKs~i~da~i~vlg~~-~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~~l~~~r~~~~~~ 243 (388)
.+|++.++|..+.-.... ...+|++.++|+||++.+++..++.++..+.....+..... ...+ ...+...++..+.+
T Consensus 46 ~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~-~~~l~~vgL~~~~~ 124 (363)
T TIGR01186 46 TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKA-LELLKLVGLEEYEH 124 (363)
T ss_pred CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHH-HHHHHhcCCchhhh
Confidence 899998888655422111 11234567999999999998888765443221111111111 1111 12333444445567
Q ss_pred CCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHH
Q psy14062 244 SSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELR 318 (388)
Q Consensus 244 ~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d 318 (388)
+.+..|||||+||+.||++|+. +|++||||||+++| +.+.+.+.++.++...+++++||+++++.+.+|
T Consensus 125 ~~p~~LSGGq~QRV~lARAL~~------~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~d 198 (363)
T TIGR01186 125 RYPDELSGGMQQRVGLARALAA------EPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGD 198 (363)
T ss_pred CChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 8899999999999999999999 99999999999999 777777777766533469999999999999988
Q ss_pred HHH
Q psy14062 319 KAV 321 (388)
Q Consensus 319 ~~~ 321 (388)
++.
T Consensus 199 rI~ 201 (363)
T TIGR01186 199 RIV 201 (363)
T ss_pred EEE
Confidence 763
No 37
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.96 E-value=4.4e-31 Score=261.18 Aligned_cols=200 Identities=15% Similarity=0.149 Sum_probs=150.6
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.+++ ++|++..+++ ||||+|.. |++++|+|||||||||||++
T Consensus 5 ~l~~~~l~----~~~~~~~~l~--------~vsl~i~~----------------------Ge~~~llGpsGsGKSTLLr~ 50 (362)
T TIGR03258 5 GIRIDHLR----VAYGANTVLD--------DLSLEIEA----------------------GELLALIGKSGCGKTTLLRA 50 (362)
T ss_pred EEEEEEEE----EEECCeEEEe--------eeEEEECC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 36677777 8898766654 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCC--CcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCc
Q psy14062 154 MLFRFNAIIGPNGS--GKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGT 231 (388)
Q Consensus 154 i~~~~ngIiGpngS--GKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~ 231 (388)
|+ |+. ++.+ |++.++|..+. ... .+.+.++++||++.++|.+++.++..+.....+............
T Consensus 51 ia----Gl~-~p~~~~G~i~~~g~~~~--~~~---~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~ 120 (362)
T TIGR03258 51 IA----GFV-KAAGLTGRIAIADRDLT--HAP---PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVAD 120 (362)
T ss_pred Hh----CCC-CCCCCCEEEEECCEECC--CCC---HHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99 998 7779 99888776542 111 123569999999999998888765432211111111110111112
Q ss_pred eEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh-hhHHHH
Q psy14062 232 DLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK-LTRVQL 305 (388)
Q Consensus 232 ~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~-~~~ii~ 305 (388)
.+...++..+.++.+..|||||+||++||++|+. +|++||||||+++| +++...+.++.++. ..++++
T Consensus 121 ~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~------~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~ 194 (362)
T TIGR03258 121 ALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAI------EPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILC 194 (362)
T ss_pred HHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 3444455556678899999999999999999999 99999999999999 77777888877763 345999
Q ss_pred HHHhHHHHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKAVNF 323 (388)
Q Consensus 306 vtH~l~~l~~~~d~~~~y 323 (388)
+||+++++...+|++.-+
T Consensus 195 vTHd~~ea~~l~dri~vl 212 (362)
T TIGR03258 195 VTHDQDDALTLADKAGIM 212 (362)
T ss_pred EeCCHHHHHHhCCEEEEE
Confidence 999999999998876443
No 38
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.96 E-value=2.6e-31 Score=244.62 Aligned_cols=199 Identities=14% Similarity=0.223 Sum_probs=138.9
Q ss_pred EEEEEEEeeceEEec-CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 75 LIITKIVAFNFKSYA-GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 75 l~i~~l~~~~fksy~-~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
+.+.+++ ++|+ +..++. |+||+|.+ |++++|+||||||||||+++
T Consensus 2 l~~~~l~----~~~~~~~~il~--------~is~~i~~----------------------G~~~~l~G~nGsGKSTLl~~ 47 (214)
T TIGR02673 2 IEFHNVS----KAYPGGVAALH--------DVSLHIRK----------------------GEFLFLTGPSGAGKTTLLKL 47 (214)
T ss_pred EEEEeee----EEeCCCceeec--------ceeEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 4455666 6784 555544 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCCce
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGTD 232 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~~ 232 (388)
|+ |++ ++.+|++.+.+..+..........+.+.+++++|++..++..+..++........+..... ..... ..
T Consensus 48 i~----Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-~~ 121 (214)
T TIGR02673 48 LY----GAL-TPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG-AA 121 (214)
T ss_pred Hh----CCC-CCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHH-HH
Confidence 99 998 7789998887754432111111112356999999987776655544322111111111000 00000 11
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++....++.+..|||||+||+.||++|+. +|+++|||||+++| ..+...+.++++++. +++++|
T Consensus 122 l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-tii~~t 194 (214)
T TIGR02673 122 LRQVGLEHKADAFPEQLSGGEQQRVAIARAIVN------SPPLLLADEPTGNLDPDLSERILDLLKRLNKRGT-TVIVAT 194 (214)
T ss_pred HHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCC-EEEEEe
Confidence 222233333456788999999999999999999 99999999999999 677778888766554 599999
Q ss_pred HhHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKA 320 (388)
Q Consensus 308 H~l~~l~~~~d~~ 320 (388)
|+++.+...||++
T Consensus 195 H~~~~~~~~~d~i 207 (214)
T TIGR02673 195 HDLSLVDRVAHRV 207 (214)
T ss_pred CCHHHHHHhcCEE
Confidence 9999999988865
No 39
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.2e-31 Score=261.00 Aligned_cols=202 Identities=14% Similarity=0.200 Sum_probs=143.4
Q ss_pred EEEEEEEeeceEEec----CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 75 LIITKIVAFNFKSYA----GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 75 l~i~~l~~~~fksy~----~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
+.+.+++ ++|+ ++.++ +|+||+|.+ |++++|+||||||||||
T Consensus 2 i~i~~l~----~~y~~~~~~~~il--------~~vsl~i~~----------------------Gei~~iiG~nGsGKSTL 47 (343)
T PRK11153 2 IELKNIS----KVFPQGGRTIHAL--------NNVSLHIPA----------------------GEIFGVIGASGAGKSTL 47 (343)
T ss_pred EEEEeEE----EEeCCCCCceEEE--------EeeEEEEcC----------------------CCEEEEECCCCCcHHHH
Confidence 4556666 7787 24554 499999999 99999999999999999
Q ss_pred HhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCC
Q psy14062 151 IDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPG 230 (388)
Q Consensus 151 l~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~ 230 (388)
+++|+ |++ ++.+|++.+.|..+...........++.++++||++..++..++.++..+.....+...........
T Consensus 48 lk~L~----Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~ 122 (343)
T PRK11153 48 IRCIN----LLE-RPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVT 122 (343)
T ss_pred HHHHh----CCC-CCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999 998 7789998888765432211111111356999999988777666654432221111111111000001
Q ss_pred ceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 231 TDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 231 ~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
..+...++....++++..|||||+||+.||++|+. +|++|||||||++| ..+...++++.++...++++
T Consensus 123 ~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~------~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiil 196 (343)
T PRK11153 123 ELLELVGLSDKADRYPAQLSGGQKQRVAIARALAS------NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVL 196 (343)
T ss_pred HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 12222233334567788999999999999999999 99999999999999 77788888887653345999
Q ss_pred HHHhHHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKAV 321 (388)
Q Consensus 306 vtH~l~~l~~~~d~~~ 321 (388)
+||+++.+.+.||++.
T Consensus 197 vtH~~~~i~~~~d~v~ 212 (343)
T PRK11153 197 ITHEMDVVKRICDRVA 212 (343)
T ss_pred EeCCHHHHHHhCCEEE
Confidence 9999999999988763
No 40
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.96 E-value=5.5e-31 Score=255.34 Aligned_cols=197 Identities=19% Similarity=0.289 Sum_probs=144.8
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|++..+|+ +|||+|.+ |++++|+||||||||||+++
T Consensus 4 ~i~~~~l~----~~~~~~~~l~--------~vsl~i~~----------------------Ge~~~l~G~NGaGKSTLl~~ 49 (303)
T TIGR01288 4 AIDLVGVS----KSYGDKVVVN--------DLSFTIAR----------------------GECFGLLGPNGAGKSTIARM 49 (303)
T ss_pred EEEEEeEE----EEeCCeEEEc--------ceeEEEcC----------------------CcEEEEECCCCCCHHHHHHH
Confidence 45666666 7898776655 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCCce
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGTD 232 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~~ 232 (388)
|+ |++ ++.+|++.+.|..+. .. ....++.++|++|++..++..++.++...+...++..... ..... ..
T Consensus 50 l~----Gl~-~p~~G~i~~~g~~~~---~~-~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-~l 119 (303)
T TIGR01288 50 LL----GMI-SPDRGKITVLGEPVP---SR-ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIP-SL 119 (303)
T ss_pred Hh----CCC-CCCceEEEECCEECc---cc-HHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHH-HH
Confidence 99 998 778999888765432 11 1122356999999988777777655433222111111110 00010 12
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++....++.+..|||||+||+.||++|+. +|+++||||||++| +.+...+.++++++. +|+++|
T Consensus 120 l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~------~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~-til~~s 192 (303)
T TIGR01288 120 LEFARLESKADVRVALLSGGMKRRLTLARALIN------DPQLLILDEPTTGLDPHARHLIWERLRSLLARGK-TILLTT 192 (303)
T ss_pred HHHCCChhHhcCchhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence 223333334567788999999999999999999 99999999999999 777788888776554 599999
Q ss_pred HhHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAV 321 (388)
Q Consensus 308 H~l~~l~~~~d~~~ 321 (388)
|+++.+.+.||++.
T Consensus 193 H~~~~~~~~~d~i~ 206 (303)
T TIGR01288 193 HFMEEAERLCDRLC 206 (303)
T ss_pred CCHHHHHHhCCEEE
Confidence 99999999988763
No 41
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.96 E-value=5.1e-31 Score=243.37 Aligned_cols=197 Identities=19% Similarity=0.241 Sum_probs=137.8
Q ss_pred EEEEEeeceEEecC----ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 77 ITKIVAFNFKSYAG----YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 77 i~~l~~~~fksy~~----~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+.+++ ++|++ +.++. ++||+|.+ |++++|+||||||||||++
T Consensus 3 ~~~l~----~~~~~~~~~~~il~--------~~s~~i~~----------------------G~~~~l~G~nGsGKSTLl~ 48 (218)
T cd03255 3 LKNLS----KTYGGGGEKVQALK--------GVSLSIEK----------------------GEFVAIVGPSGSGKSTLLN 48 (218)
T ss_pred EeeeE----EEecCCCcceeEEe--------eeEEEEcC----------------------CCEEEEEcCCCCCHHHHHH
Confidence 45555 67875 45554 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCcc-chhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCC
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPG 230 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~-~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~ 230 (388)
+|+ |++ ++.+|++.+.|..+...... ....+++.+++++|++..++..++.++........+..... ...+.
T Consensus 49 ~i~----Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~- 122 (218)
T cd03255 49 ILG----GLD-RPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAE- 122 (218)
T ss_pred HHh----CCc-CCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHH-
Confidence 999 998 77899988877644321110 01123456999999988777666554322111111111000 00111
Q ss_pred ceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 231 TDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 231 ~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
..+...++....++.+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.+++++...++++
T Consensus 123 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~------~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~ 196 (218)
T cd03255 123 ELLERVGLGDRLNHYPSELSGGQQQRVAIARALAN------DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVV 196 (218)
T ss_pred HHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHcc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 12222233333456788999999999999999999 99999999999999 77777888877642335999
Q ss_pred HHHhHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKA 320 (388)
Q Consensus 306 vtH~l~~l~~~~d~~ 320 (388)
+||+++.+. .||++
T Consensus 197 ~sH~~~~~~-~~d~v 210 (218)
T cd03255 197 VTHDPELAE-YADRI 210 (218)
T ss_pred EECCHHHHh-hhcEE
Confidence 999999887 77764
No 42
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.9e-31 Score=260.47 Aligned_cols=200 Identities=14% Similarity=0.143 Sum_probs=147.0
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.+++ ++|++..+++ |+||+|.+ |++++|+|||||||||||++
T Consensus 3 ~l~i~~l~----~~~~~~~vl~--------~vsl~i~~----------------------Ge~~~l~G~nGsGKSTLL~~ 48 (369)
T PRK11000 3 SVTLRNVT----KAYGDVVISK--------DINLDIHE----------------------GEFVVFVGPSGCGKSTLLRM 48 (369)
T ss_pred EEEEEEEE----EEeCCeEEEe--------eeEEEEcC----------------------CCEEEEECCCCCcHHHHHHH
Confidence 35667777 7898777655 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceE
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l 233 (388)
|+ |++ ++.+|++.+.|..+.. .. ...+.++|+||++..++.+++.++..+.....+.............+
T Consensus 49 ia----Gl~-~p~~G~I~~~g~~i~~--~~---~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l 118 (369)
T PRK11000 49 IA----GLE-DITSGDLFIGEKRMND--VP---PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVA 118 (369)
T ss_pred Hh----CCC-CCCceEEEECCEECCC--CC---HhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 99 998 7789998887765421 11 12246999999998888877765443221111111110000001123
Q ss_pred EEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 234 ~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH 308 (388)
...++....++.+..|||||+||+.||++|+. +|++||||||+++| +.+...++++.++...+++++||
T Consensus 119 ~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~------~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTH 192 (369)
T PRK11000 119 EVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA------EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192 (369)
T ss_pred HHcCChhhhcCChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeC
Confidence 33344444567889999999999999999999 99999999999999 66777888877653345999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy14062 309 DLKALEPELRKAVNF 323 (388)
Q Consensus 309 ~l~~l~~~~d~~~~y 323 (388)
+++++...||++...
T Consensus 193 d~~~~~~~~d~i~vl 207 (369)
T PRK11000 193 DQVEAMTLADKIVVL 207 (369)
T ss_pred CHHHHHHhCCEEEEE
Confidence 999999998876433
No 43
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.96 E-value=9.4e-31 Score=258.24 Aligned_cols=197 Identities=18% Similarity=0.210 Sum_probs=147.3
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|++..+++ +|||+|.+ |++++|+|||||||||||++|
T Consensus 3 L~i~~l~----~~~~~~~~l~--------~isl~i~~----------------------Ge~~~llGpsGsGKSTLLr~I 48 (353)
T PRK10851 3 IEIANIK----KSFGRTQVLN--------DISLDIPS----------------------GQMVALLGPSGSGKTTLLRII 48 (353)
T ss_pred EEEEEEE----EEeCCeEEEE--------EeEEEEcC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 4566666 7898776655 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEecccc----CCCCccccccCC
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQII----DKPNEEYEIIPG 230 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~----~~~~~~~~~~~~ 230 (388)
+ |+. ++.+|++.++|..+. .. ..+.+.++|+||++.++|.+++.++..+..... ............
T Consensus 49 a----Gl~-~p~~G~I~i~g~~i~--~~---~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~ 118 (353)
T PRK10851 49 A----GLE-HQTSGHIRFHGTDVS--RL---HARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVT 118 (353)
T ss_pred h----CCC-CCCCcEEEECCEECC--CC---CHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHH
Confidence 9 998 778999888776542 11 123356999999999998888765433221110 001000000011
Q ss_pred ceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 231 TDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 231 ~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
..+...++..+.++++..|||||+||+.||++|+. +|++||||||+++| +.+...+.++.++...++++
T Consensus 119 ~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~------~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~ 192 (353)
T PRK10851 119 QLLEMVQLAHLADRYPAQLSGGQKQRVALARALAV------EPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVF 192 (353)
T ss_pred HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 12333344445678899999999999999999999 99999999999999 77777888877763345999
Q ss_pred HHHhHHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKAV 321 (388)
Q Consensus 306 vtH~l~~l~~~~d~~~ 321 (388)
+||+++++...+|++.
T Consensus 193 vTHd~~ea~~~~Dri~ 208 (353)
T PRK10851 193 VTHDQEEAMEVADRVV 208 (353)
T ss_pred EeCCHHHHHHhCCEEE
Confidence 9999999999998763
No 44
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.5e-30 Score=227.85 Aligned_cols=196 Identities=15% Similarity=0.201 Sum_probs=148.1
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++++.++. -+|.++.. .+|+|||++|.+ |++++++|||||||||||++
T Consensus 3 ~l~~~~~s----l~y~g~~~------~~le~vsL~ia~----------------------ge~vv~lGpSGcGKTTLLnl 50 (259)
T COG4525 3 MLNVSHLS----LSYEGKPR------SALEDVSLTIAS----------------------GELVVVLGPSGCGKTTLLNL 50 (259)
T ss_pred eeehhheE----EecCCcch------hhhhccceeecC----------------------CCEEEEEcCCCccHHHHHHH
Confidence 45566666 68987762 246699999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceE
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l 233 (388)
++ |++ ++..|.+.+++..+.-.| ..-|+|||+..+.|++++.++..+-.++.+..+..........+
T Consensus 51 ~A----Gf~-~P~~G~i~l~~r~i~gPg--------aergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l 117 (259)
T COG4525 51 IA----GFV-TPSRGSIQLNGRRIEGPG--------AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQML 117 (259)
T ss_pred Hh----cCc-CcccceEEECCEeccCCC--------ccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 99 999 778999888876554222 34689999999999998775443222333332221111111233
Q ss_pred EEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 234 ~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH 308 (388)
...++....+++++.|||||+||+-|||||+. +|++|+||||+++| +.+-.++-++.++....+.+|||
T Consensus 118 ~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~------eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH 191 (259)
T COG4525 118 ALVGLEGAEHKYIWQLSGGMRQRVGIARALAV------EPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITH 191 (259)
T ss_pred HHhCcccccccceEeecchHHHHHHHHHHhhc------CcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 34455556688999999999999999999999 99999999999999 66666777776655445899999
Q ss_pred hHHHHHHHHHHH
Q psy14062 309 DLKALEPELRKA 320 (388)
Q Consensus 309 ~l~~l~~~~d~~ 320 (388)
+++++--.++++
T Consensus 192 ~ieEAlflatrL 203 (259)
T COG4525 192 DIEEALFLATRL 203 (259)
T ss_pred cHHHHHhhhhee
Confidence 999988877764
No 45
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=7.5e-31 Score=241.51 Aligned_cols=193 Identities=17% Similarity=0.197 Sum_probs=137.5
Q ss_pred EEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 77 i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.+++ ++|+++.+++ |+||+|.+ |++++|+||||||||||+++|+
T Consensus 3 ~~~l~----~~~~~~~il~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l~- 47 (213)
T cd03259 3 LKGLS----KTYGSVRALD--------DLSLTVEP----------------------GEFLALLGPSGCGKTTLLRLIA- 47 (213)
T ss_pred eeeeE----EEeCCeeeec--------ceeEEEcC----------------------CcEEEEECCCCCCHHHHHHHHh-
Confidence 44555 6788766654 99999999 9999999999999999999999
Q ss_pred cccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCCceEEE
Q psy14062 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGTDLEI 235 (388)
Q Consensus 157 ~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~~l~~ 235 (388)
|++ ++.+|++.+.|..+.- . . ...+.+++++|++..++..+..++.............. ..... ..+..
T Consensus 48 ---G~~-~p~~G~i~~~g~~~~~--~--~-~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-~~l~~ 117 (213)
T cd03259 48 ---GLE-RPDSGEILIDGRDVTG--V--P-PERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVR-ELLEL 117 (213)
T ss_pred ---CCC-CCCCeEEEECCEEcCc--C--c-hhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHH-HHHHH
Confidence 998 7789998887654321 1 1 12346999999987776666544322111111100000 00000 11222
Q ss_pred EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhH
Q psy14062 236 ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDL 310 (388)
Q Consensus 236 ~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l 310 (388)
.++..+.++.+..|||||+||+.||++|+. +|+++||||||++| ..+.+.+.+++++...+|+++||++
T Consensus 118 ~~l~~~~~~~~~~LSgG~~qrl~la~al~~------~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 191 (213)
T cd03259 118 VGLEGLLNRYPHELSGGQQQRVALARALAR------EPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ 191 (213)
T ss_pred cCChhhhhcChhhCCHHHHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 233333467788999999999999999999 99999999999999 6777788877664233599999999
Q ss_pred HHHHHHHHHH
Q psy14062 311 KALEPELRKA 320 (388)
Q Consensus 311 ~~l~~~~d~~ 320 (388)
+.+.+.||++
T Consensus 192 ~~~~~~~d~v 201 (213)
T cd03259 192 EEALALADRI 201 (213)
T ss_pred HHHHHhcCEE
Confidence 9999888865
No 46
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.95 E-value=1.2e-30 Score=243.17 Aligned_cols=198 Identities=17% Similarity=0.220 Sum_probs=141.4
Q ss_pred EEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 77 i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.+++ ++|+++.+++ ++||++.+ |++++|+||||||||||+++|+
T Consensus 3 ~~~l~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~l~- 47 (232)
T cd03218 3 AENLS----KRYGKRKVVN--------GVSLSVKQ----------------------GEIVGLLGPNGAGKTTTFYMIV- 47 (232)
T ss_pred EEEEE----EEeCCEEeec--------cceeEecC----------------------CcEEEEECCCCCCHHHHHHHHh-
Confidence 45555 6798777655 99999999 9999999999999999999999
Q ss_pred cccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cccCCceEEE
Q psy14062 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EIIPGTDLEI 235 (388)
Q Consensus 157 ~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~~~~l~~ 235 (388)
|++ ++.+|++.+.|..+.. .......+..+++++|.+..++..++.++...+........... ..+ ...+..
T Consensus 48 ---Gl~-~p~~G~i~~~g~~~~~--~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-~~~l~~ 120 (232)
T cd03218 48 ---GLV-KPDSGKILLDGQDITK--LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKL-EELLEE 120 (232)
T ss_pred ---CCC-CCCCcEEEECCEeccc--CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHH-HHHHHH
Confidence 998 7789998887654321 11112223469999999887776665443221111111110000 001 012222
Q ss_pred EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhH
Q psy14062 236 ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDL 310 (388)
Q Consensus 236 ~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l 310 (388)
.++....+..+..|||||+||+.+|++|+. +|++||||||+++| +.+...++++.+++. +++++||++
T Consensus 121 ~~l~~~~~~~~~~LS~G~~qrl~la~al~~------~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~-tii~~sH~~ 193 (232)
T cd03218 121 FHITHLRKSKASSLSGGERRRVEIARALAT------NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGI-GVLITDHNV 193 (232)
T ss_pred cCChhhhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 233334467788999999999999999999 99999999999999 677778887766554 599999999
Q ss_pred HHHHHHHHHHHHH
Q psy14062 311 KALEPELRKAVNF 323 (388)
Q Consensus 311 ~~l~~~~d~~~~y 323 (388)
+.+.+.+|++...
T Consensus 194 ~~~~~~~d~i~~l 206 (232)
T cd03218 194 RETLSITDRAYII 206 (232)
T ss_pred HHHHHhCCEEEEE
Confidence 9999999876443
No 47
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.95 E-value=2.3e-30 Score=258.62 Aligned_cols=198 Identities=13% Similarity=0.167 Sum_probs=148.4
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|+++.+|+ +|||+|.+ |++++|+|||||||||||++
T Consensus 3 ~L~~~nls----~~y~~~~vL~--------~vs~~i~~----------------------Geiv~liGpNGaGKSTLLk~ 48 (402)
T PRK09536 3 MIDVSDLS----VEFGDTTVLD--------GVDLSVRE----------------------GSLVGLVGPNGAGKTTLLRA 48 (402)
T ss_pred eEEEeeEE----EEECCEEEEE--------eeEEEECC----------------------CCEEEEECCCCchHHHHHHH
Confidence 56667777 7899877765 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEecc----ccCC-CCcccccc
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ----IIDK-PNEEYEII 228 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~----~~~~-~~~~~~~~ 228 (388)
|+ |++ ++.+|++.++|..++-. ....+ ++.+++++|++..++.+++.++...... .+.. .......+
T Consensus 49 La----Gll-~p~sG~I~l~G~~i~~~--~~~~~-~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v 120 (402)
T PRK09536 49 IN----GTL-TPTAGTVLVAGDDVEAL--SARAA-SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAV 120 (402)
T ss_pred Hh----cCC-CCCCcEEEECCEEcCcC--CHHHH-hcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHH
Confidence 99 999 77899988887654321 11223 4569999999887777776554322110 0010 11111111
Q ss_pred CCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHH
Q psy14062 229 PGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRV 303 (388)
Q Consensus 229 ~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~i 303 (388)
...+...++..+.++++..|||||+||+.||++|+. +|++|||||||++| .++..+++++.+++. ++
T Consensus 121 -~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~------~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~-TI 192 (402)
T PRK09536 121 -ERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQ------ATPVLLLDEPTASLDINHQVRTLELVRRLVDDGK-TA 192 (402)
T ss_pred -HHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc------CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCC-EE
Confidence 113333444445578899999999999999999999 99999999999999 678888888876554 59
Q ss_pred HHHHHhHHHHHHHHHHHH
Q psy14062 304 QLVETDLKALEPELRKAV 321 (388)
Q Consensus 304 i~vtH~l~~l~~~~d~~~ 321 (388)
++++|+++.+.++||++.
T Consensus 193 IivsHdl~~~~~~adrii 210 (402)
T PRK09536 193 VAAIHDLDLAARYCDELV 210 (402)
T ss_pred EEEECCHHHHHHhCCEEE
Confidence 999999999999999863
No 48
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=4.4e-31 Score=229.80 Aligned_cols=204 Identities=15% Similarity=0.177 Sum_probs=152.5
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+.+.+.++. |+||...+|. +|||+... |.++.|||.||||||||||
T Consensus 5 ~~l~v~dlH----K~~G~~eVLK--------GvSL~A~~----------------------GdVisIIGsSGSGKSTfLR 50 (256)
T COG4598 5 NALEVEDLH----KRYGEHEVLK--------GVSLQANA----------------------GDVISIIGSSGSGKSTFLR 50 (256)
T ss_pred cceehhHHH----hhcccchhhc--------ceeeecCC----------------------CCEEEEecCCCCchhHHHH
Confidence 467777777 9999888865 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhc----Cc----cch---hhhhccceeEecccCCCCCcceEEEEEE-eccccCC
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVF----GY----RAS---KIRANKLSVLMHKSDQVGGVSRCSVAIH-FAQIIDK 220 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vl----g~----~~~---~lr~~~i~~l~q~~~~~~~~~~~eV~~~-~~~~~~~ 220 (388)
||+ .+. .|.+|.+.+.|..+... |. +.. .+| .++++|||+.++...+++.++.+. .....+.
T Consensus 51 CiN----~LE-~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~R-s~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~ 124 (256)
T COG4598 51 CIN----FLE-KPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLR-TRLGMVFQHFNLWSHMTVLENVIEAPVHVLGV 124 (256)
T ss_pred HHH----hhc-CCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHH-HHhhHhhhhcchhHHHHHHHHHHhcchHhhcC
Confidence 999 777 56699999888765432 11 111 133 459999999999888887654322 1112222
Q ss_pred CCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHH
Q psy14062 221 PNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEE 295 (388)
Q Consensus 221 ~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el 295 (388)
...+........+.-.++..+.+.++..|||||+||++|||+|+. .|.++++|||||+| -++...+.++
T Consensus 125 ~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLam------eP~vmLFDEPTSALDPElVgEVLkv~~~L 198 (256)
T COG4598 125 SKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAM------EPEVMLFDEPTSALDPELVGEVLKVMQDL 198 (256)
T ss_pred CHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhc------CCceEeecCCcccCCHHHHHHHHHHHHHH
Confidence 211111001112233344555667889999999999999999999 99999999999999 6677788889
Q ss_pred HHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 296 RTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 296 ~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
.+++.+ .++|||+|..+...+.++.-.
T Consensus 199 AeEgrT-Mv~VTHEM~FAR~Vss~v~fL 225 (256)
T COG4598 199 AEEGRT-MVVVTHEMGFARDVSSHVIFL 225 (256)
T ss_pred HHhCCe-EEEEeeehhHHHhhhhheEEe
Confidence 999886 999999999999887776433
No 49
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.95 E-value=2.3e-30 Score=242.89 Aligned_cols=203 Identities=17% Similarity=0.237 Sum_probs=141.1
Q ss_pred EEEEEEEeeceEEec-CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 75 LIITKIVAFNFKSYA-GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 75 l~i~~l~~~~fksy~-~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
+.+.+++ ++|+ +..++. |+||+|.+ |++++|+||||||||||+++
T Consensus 2 l~~~~l~----~~~~~~~~il~--------~vs~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~ 47 (243)
T TIGR02315 2 LEVENLS----KVYPNGKQALK--------NINLNINP----------------------GEFVAIIGPSGAGKSTLLRC 47 (243)
T ss_pred eEEEeee----eecCCCcceee--------cceEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 4455565 6787 555654 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEE-ecc-------ccCCC-Ccc
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIH-FAQ-------IIDKP-NEE 224 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~-~~~-------~~~~~-~~~ 224 (388)
|+ |+. ++.+|++.++|..+...........++.+++++|++..++..++.++... ... +.+.. ...
T Consensus 48 l~----Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~ 122 (243)
T TIGR02315 48 IN----RLV-EPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEED 122 (243)
T ss_pred Hh----CCc-CCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHH
Confidence 99 998 77899988877654321111011123569999999887776665543321 100 00000 000
Q ss_pred ccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 225 YEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 225 ~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
...+. ..+...++....+..+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.+++++.
T Consensus 123 ~~~~~-~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 195 (243)
T TIGR02315 123 KERAL-SALERVGLADKAYQRADQLSGGQQQRVAIARALAQ------QPDLILADEPIASLDPKTSKQVMDYLKRINKED 195 (243)
T ss_pred HHHHH-HHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 00000 11222233333467788999999999999999999 99999999999999 66777888776653
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
..+++++||+++.+.+.||++...
T Consensus 196 ~~tiii~tH~~~~~~~~~d~v~~l 219 (243)
T TIGR02315 196 GITVIINLHQVDLAKKYADRIVGL 219 (243)
T ss_pred CCEEEEEeCCHHHHHHhcCeEEEE
Confidence 335999999999999998876443
No 50
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=9.5e-31 Score=242.09 Aligned_cols=196 Identities=16% Similarity=0.254 Sum_probs=140.1
Q ss_pred EEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 76 IITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 76 ~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.+.+++ ++|+++.++. ||||+|.+ |++++|+||||||||||+++|+
T Consensus 2 ~~~~~~----~~~~~~~il~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~i~ 47 (220)
T cd03265 2 EVENLV----KKYGDFEAVR--------GVSFRVRR----------------------GEIFGLLGPNGAGKTTTIKMLT 47 (220)
T ss_pred EEEEEE----EEECCEEeee--------ceeEEECC----------------------CCEEEEECCCCCCHHHHHHHHh
Confidence 345566 7898776655 99999999 9999999999999999999999
Q ss_pred hcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCCceEE
Q psy14062 156 FRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGTDLE 234 (388)
Q Consensus 156 ~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~~l~ 234 (388)
|++ ++.+|++.+.+..+. . ..... .+.+++++|++..++..++.++........+..... ...+ ...+.
T Consensus 48 ----G~~-~~~~G~i~~~g~~~~--~-~~~~~-~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-~~~l~ 117 (220)
T cd03265 48 ----TLL-KPTSGRATVAGHDVV--R-EPREV-RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERI-DELLD 117 (220)
T ss_pred ----CCC-CCCceEEEECCEecC--c-ChHHH-hhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHH-HHHHH
Confidence 998 778999888775432 1 11122 346999999987776666543322111111111100 0000 11222
Q ss_pred EEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHh
Q psy14062 235 IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETD 309 (388)
Q Consensus 235 ~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~ 309 (388)
..++....+..+..|||||+||+.||++|+. +|+++|+|||+++| +.+...+.++.++...+++++||+
T Consensus 118 ~~~l~~~~~~~~~~LS~G~~qr~~la~al~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~ 191 (220)
T cd03265 118 FVGLLEAADRLVKTYSGGMRRRLEIARSLVH------RPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHY 191 (220)
T ss_pred HcCCHHHhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 2333334467788999999999999999999 99999999999999 667778887776523359999999
Q ss_pred HHHHHHHHHHHH
Q psy14062 310 LKALEPELRKAV 321 (388)
Q Consensus 310 l~~l~~~~d~~~ 321 (388)
++.+...++++.
T Consensus 192 ~~~~~~~~d~i~ 203 (220)
T cd03265 192 MEEAEQLCDRVA 203 (220)
T ss_pred HHHHHHhCCEEE
Confidence 999999888753
No 51
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=5e-30 Score=223.69 Aligned_cols=193 Identities=15% Similarity=0.194 Sum_probs=144.7
Q ss_pred EEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 76 IITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 76 ~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.+.+++ .+|+... | ..++.|+. |+++||+|||||||||||++|+
T Consensus 3 ~L~~V~----~~y~~~~----~------~fdl~v~~----------------------ge~vAi~GpSGaGKSTLLnLIA 46 (231)
T COG3840 3 ALDDVR----FSYGHLP----M------RFDLTVPA----------------------GEIVAILGPSGAGKSTLLNLIA 46 (231)
T ss_pred cccceE----EeeCcce----E------EEEEeecC----------------------CcEEEEECCCCccHHHHHHHHH
Confidence 455566 5787543 2 56689999 9999999999999999999999
Q ss_pred hcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEE-EEeccccCCCCccccccCCceEE
Q psy14062 156 FRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVA-IHFAQIIDKPNEEYEIIPGTDLE 234 (388)
Q Consensus 156 ~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~-~~~~~~~~~~~~~~~~~~~~~l~ 234 (388)
|+. .|.+|.+.|+|.+... .. ...+-++++||+.++|..++++++. +....-........+.+. ....
T Consensus 47 ----GF~-~P~~G~i~i~g~d~t~--~~---P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~-~aa~ 115 (231)
T COG3840 47 ----GFE-TPASGEILINGVDHTA--SP---PAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVE-AAAA 115 (231)
T ss_pred ----hcc-CCCCceEEEcCeecCc--CC---cccCChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHH-HHHH
Confidence 999 7789998777665431 11 1224589999999999999988543 332110000111111111 1122
Q ss_pred EEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHh
Q psy14062 235 IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETD 309 (388)
Q Consensus 235 ~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~ 309 (388)
..++....++.+.+|||||+||+++||+|.. ..++++||||+++| .++..++.+++.+...|+++|||.
T Consensus 116 ~vGl~~~~~RLP~~LSGGqRQRvALARclvR------~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~ 189 (231)
T COG3840 116 QVGLAGFLKRLPGELSGGQRQRVALARCLVR------EQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHH 189 (231)
T ss_pred HhChhhHhhhCccccCchHHHHHHHHHHHhc------cCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCC
Confidence 2344556678899999999999999999999 88899999999999 888889999998877789999999
Q ss_pred HHHHHHHHHHHH
Q psy14062 310 LKALEPELRKAV 321 (388)
Q Consensus 310 l~~l~~~~d~~~ 321 (388)
.+++.+.++++.
T Consensus 190 ~~Da~~ia~~~~ 201 (231)
T COG3840 190 PEDAARIADRVV 201 (231)
T ss_pred HHHHHHhhhceE
Confidence 999999988764
No 52
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.95 E-value=7.3e-31 Score=254.37 Aligned_cols=188 Identities=15% Similarity=0.227 Sum_probs=139.6
Q ss_pred EEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC
Q psy14062 86 KSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN 165 (388)
Q Consensus 86 ksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn 165 (388)
|+|+++.+++ ||||+|.+ |++++|+||||||||||+++|+ |++ ++
T Consensus 1 k~y~~~~~l~--------~vs~~i~~----------------------Ge~~~l~G~NGaGKSTLl~~l~----Gl~-~p 45 (302)
T TIGR01188 1 KVYGDFKAVD--------GVNFKVRE----------------------GEVFGFLGPNGAGKTTTIRMLT----TLL-RP 45 (302)
T ss_pred CeeCCeeEEe--------eeeEEEcC----------------------CcEEEEECCCCCCHHHHHHHHh----CCC-CC
Confidence 3577666654 99999999 9999999999999999999999 999 77
Q ss_pred CCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCCceEEEEEEeeeCCC
Q psy14062 166 GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGTDLEIARTAFYDNS 244 (388)
Q Consensus 166 gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~~l~~~r~~~~~~~ 244 (388)
.+|++.+.|..+.. ..... ++.+++++|++..++.+++.++..++...++..... .... ...+...++....++
T Consensus 46 ~~G~i~~~g~~~~~---~~~~~-~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-~~~l~~~~l~~~~~~ 120 (302)
T TIGR01188 46 TSGTARVAGYDVVR---EPRKV-RRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERA-EELLELFELGEAADR 120 (302)
T ss_pred CceEEEECCEEccc---CHHHH-HhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHcCChhHhCC
Confidence 89998887754421 11222 346999999988887777665433222222211110 0001 112222333334567
Q ss_pred CeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHH
Q psy14062 245 SYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRK 319 (388)
Q Consensus 245 ~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~ 319 (388)
.+..|||||+||+.||++|.. +|++|||||||++| ..+...+.++++++. +++++||+++++.+.||+
T Consensus 121 ~~~~LSgG~~qrv~la~al~~------~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~-tvi~~sH~~~~~~~~~d~ 193 (302)
T TIGR01188 121 PVGTYSGGMRRRLDIAASLIH------QPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGV-TILLTTHYMEEADKLCDR 193 (302)
T ss_pred chhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC-EEEEECCCHHHHHHhCCE
Confidence 889999999999999999999 99999999999999 777788888876654 599999999999999987
Q ss_pred H
Q psy14062 320 A 320 (388)
Q Consensus 320 ~ 320 (388)
+
T Consensus 194 v 194 (302)
T TIGR01188 194 I 194 (302)
T ss_pred E
Confidence 6
No 53
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.95 E-value=1.5e-30 Score=243.03 Aligned_cols=198 Identities=20% Similarity=0.229 Sum_probs=140.9
Q ss_pred EEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 77 i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.++. ++|++..++. ++||+|.+ |++++|+||||||||||+++|+
T Consensus 3 ~~~l~----~~~~~~~~l~--------~vsl~i~~----------------------Ge~~~l~G~nGsGKSTLl~~l~- 47 (236)
T cd03219 3 VRGLT----KRFGGLVALD--------DVSFSVRP----------------------GEIHGLIGPNGAGKTTLFNLIS- 47 (236)
T ss_pred eeeeE----EEECCEEEec--------CceEEecC----------------------CcEEEEECCCCCCHHHHHHHHc-
Confidence 44555 6788766654 99999999 9999999999999999999999
Q ss_pred cccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCC----------Ccc-c
Q psy14062 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKP----------NEE-Y 225 (388)
Q Consensus 157 ~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~----------~~~-~ 225 (388)
|++ ++.+|++.+.+..+.- ......+...+++++|++..++..++.++........... ... .
T Consensus 48 ---Gl~-~~~~G~i~~~g~~~~~--~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (236)
T cd03219 48 ---GFL-RPTSGSVLFDGEDITG--LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREAR 121 (236)
T ss_pred ---CCC-CCCCceEEECCEECCC--CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHH
Confidence 998 7789998887654321 1111222346999999988877766654332111110000 000 0
Q ss_pred cccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhh
Q psy14062 226 EIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKL 300 (388)
Q Consensus 226 ~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~ 300 (388)
..+ ...+...++....+..+..|||||+||+.+|++|+. +|+++||||||++| ..+...+.++.+.+.
T Consensus 122 ~~~-~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 194 (236)
T cd03219 122 ERA-EELLERVGLADLADRPAGELSYGQQRRLEIARALAT------DPKLLLLDEPAAGLNPEETEELAELIRELRERGI 194 (236)
T ss_pred HHH-HHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 001 112222333334467788999999999999999999 99999999999999 667778877766544
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 301 TRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 301 ~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+++++||+++.+...+|++...
T Consensus 195 -tii~vsH~~~~~~~~~d~i~~l 216 (236)
T cd03219 195 -TVLLVEHDMDVVMSLADRVTVL 216 (236)
T ss_pred -EEEEEecCHHHHHHhCCEEEEE
Confidence 5999999999999998876443
No 54
>PRK10908 cell division protein FtsE; Provisional
Probab=99.95 E-value=1.8e-30 Score=240.65 Aligned_cols=199 Identities=13% Similarity=0.172 Sum_probs=138.6
Q ss_pred EEEEEEEeeceEEe-cCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 75 LIITKIVAFNFKSY-AGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 75 l~i~~l~~~~fksy-~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
+.+.+++ ++| +++.+++ |+||+|.+ |++++|+||||||||||+++
T Consensus 2 l~~~~l~----~~~~~~~~~l~--------~vsl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~ 47 (222)
T PRK10908 2 IRFEHVS----KAYLGGRQALQ--------GVTFHMRP----------------------GEMAFLTGHSGAGKSTLLKL 47 (222)
T ss_pred EEEEeeE----EEecCCCeEEe--------eeeEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 4556666 678 5555554 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCCce
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGTD 232 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~~ 232 (388)
|+ |++ ++.+|++.+.+..+.-.........++.++|++|++..++..+..++........+..... ...+. ..
T Consensus 48 l~----G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-~~ 121 (222)
T PRK10908 48 IC----GIE-RPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVS-AA 121 (222)
T ss_pred Hh----CCC-CCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHH-HH
Confidence 99 998 7789998887754421111111112356999999987666655544322111111111100 00000 11
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++....++.+..|||||+||+.+|++|.. +|+++|||||+++| +.+...+.++++++. +++++|
T Consensus 122 l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-tiii~s 194 (222)
T PRK10908 122 LDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVN------KPAVLLADEPTGNLDDALSEGILRLFEEFNRVGV-TVLMAT 194 (222)
T ss_pred HHHcCChhhhhCCchhCCHHHHHHHHHHHHHHc------CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCC-EEEEEe
Confidence 222222233456788999999999999999999 99999999999999 667778887766544 599999
Q ss_pred HhHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKA 320 (388)
Q Consensus 308 H~l~~l~~~~d~~ 320 (388)
|+++.+...+|++
T Consensus 195 H~~~~~~~~~d~i 207 (222)
T PRK10908 195 HDIGLISRRSYRM 207 (222)
T ss_pred CCHHHHHHhCCEE
Confidence 9999999888765
No 55
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.95 E-value=1.2e-30 Score=240.11 Aligned_cols=197 Identities=16% Similarity=0.211 Sum_probs=138.2
Q ss_pred EEEEEeeceEEecC-ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 77 ITKIVAFNFKSYAG-YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 77 i~~l~~~~fksy~~-~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+.+++ ++|++ +.++. |+||++.+ |++++|+||||||||||+++|+
T Consensus 3 ~~~l~----~~~~~~~~~l~--------~~sl~i~~----------------------G~~~~i~G~nGsGKSTLl~~l~ 48 (214)
T cd03292 3 FINVT----KTYPNGTAALD--------GINISISA----------------------GEFVFLVGPSGAGKSTLLKLIY 48 (214)
T ss_pred EEEEE----EEeCCCceeee--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh
Confidence 45555 67864 45544 99999999 9999999999999999999999
Q ss_pred hcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCCceEE
Q psy14062 156 FRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGTDLE 234 (388)
Q Consensus 156 ~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~~l~ 234 (388)
|+. ++.+|++.+.|..+...........++.+++++|++..++..+..++........+..... ..... ..+.
T Consensus 49 ----G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~-~~l~ 122 (214)
T cd03292 49 ----KEE-LPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP-AALE 122 (214)
T ss_pred ----cCC-CCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHH-HHHH
Confidence 998 7789998887764432111111122356999999988777666554332211111111000 00000 1122
Q ss_pred EEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHh
Q psy14062 235 IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETD 309 (388)
Q Consensus 235 ~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~ 309 (388)
..++..+.+..+..|||||+||+.||++|+. +|+++||||||++| +.+...+.++++++. +++++||+
T Consensus 123 ~~~l~~~~~~~~~~LS~G~~qrv~laral~~------~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~-tiiivtH~ 195 (214)
T cd03292 123 LVGLSHKHRALPAELSGGEQQRVAIARAIVN------SPTILIADEPTGNLDPDTTWEIMNLLKKINKAGT-TVVVATHA 195 (214)
T ss_pred HcCCHHHhhCChhhcCHHHHHHHHHHHHHHc------CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCC-EEEEEeCC
Confidence 2233334456788999999999999999999 99999999999999 667778887765554 59999999
Q ss_pred HHHHHHHHHHH
Q psy14062 310 LKALEPELRKA 320 (388)
Q Consensus 310 l~~l~~~~d~~ 320 (388)
++.+...+|++
T Consensus 196 ~~~~~~~~d~i 206 (214)
T cd03292 196 KELVDTTRHRV 206 (214)
T ss_pred HHHHHHhCCEE
Confidence 99999888764
No 56
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.8e-30 Score=259.28 Aligned_cols=187 Identities=15% Similarity=0.150 Sum_probs=137.0
Q ss_pred ccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhc
Q psy14062 101 EVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVF 180 (388)
Q Consensus 101 ~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vl 180 (388)
+|+|+||+|.+ |++++|+|||||||||||++|+ |++ ++.+|++.++|..+.-.
T Consensus 43 ~L~~isl~i~~----------------------Gei~~LvG~NGsGKSTLLr~I~----Gl~-~p~sG~I~i~G~~i~~~ 95 (400)
T PRK10070 43 GVKDASLAIEE----------------------GEIFVIMGLSGSGKSTMVRLLN----RLI-EPTRGQVLIDGVDIAKI 95 (400)
T ss_pred EEEeEEEEEcC----------------------CCEEEEECCCCchHHHHHHHHH----cCC-CCCCCEEEECCEECCcC
Confidence 46699999999 9999999999999999999999 999 77899988877654322
Q ss_pred Ccc-chhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCCceEEEEEEeeeCCCCeeeeCCccccHHH
Q psy14062 181 GYR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKE 258 (388)
Q Consensus 181 g~~-~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~ 258 (388)
... ....+.+.++|+||++..++..++.++..+.....+..... ...+ ...+...++..+.++.+..|||||+||+.
T Consensus 96 ~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~-~e~L~~~gL~~~~~~~~~~LSgGq~QRv~ 174 (400)
T PRK10070 96 SDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKA-LDALRQVGLENYAHSYPDELSGGMRQRVG 174 (400)
T ss_pred CHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHH-HHHHHHcCCChhhhcCcccCCHHHHHHHH
Confidence 111 11234457999999998888777665433211111111111 0111 11233334444557788999999999999
Q ss_pred HHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHH
Q psy14062 259 VAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 259 Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
||++|+. +|++|||||||++| +.+...+.+++++...+++++||+++++.+.+|++.
T Consensus 175 LArAL~~------~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~ 236 (400)
T PRK10070 175 LARALAI------NPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIA 236 (400)
T ss_pred HHHHHhc------CCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEE
Confidence 9999999 99999999999999 677778877766533459999999999999888763
No 57
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.7e-30 Score=242.13 Aligned_cols=198 Identities=15% Similarity=0.224 Sum_probs=141.4
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|+++.++. ||||+|.+ |++++|+||||||||||+++|
T Consensus 3 l~~~~l~----~~~~~~~il~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l 48 (239)
T cd03296 3 IEVRNVS----KRFGDFVALD--------DVSLDIPS----------------------GELVALLGPSGSGKTTLLRLI 48 (239)
T ss_pred EEEEeEE----EEECCEEeee--------eeeEEEcC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 4455565 6798776655 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCC----CCcc-ccccC
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK----PNEE-YEIIP 229 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~----~~~~-~~~~~ 229 (388)
+ |++ ++.+|++.+.|..+... . .+.+.++|++|++..++..++.++.......... .... ....
T Consensus 49 ~----Gl~-~~~~G~i~~~g~~~~~~--~---~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~- 117 (239)
T cd03296 49 A----GLE-RPDSGTILFGGEDATDV--P---VQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKV- 117 (239)
T ss_pred h----CCC-CCCceEEEECCEECCcC--C---ccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHH-
Confidence 9 998 77899988876543211 1 1124699999998877666665433221111110 0000 0000
Q ss_pred CceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHH
Q psy14062 230 GTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQ 304 (388)
Q Consensus 230 ~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii 304 (388)
...+...++....+..+..|||||+||+.||++|+. +|+++|||||+++| +.+.+.+.+++++...+++
T Consensus 118 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvi 191 (239)
T cd03296 118 HELLKLVQLDWLADRYPAQLSGGQRQRVALARALAV------EPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTV 191 (239)
T ss_pred HHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 011222233334467788999999999999999999 99999999999999 6777788887765333599
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q psy14062 305 LVETDLKALEPELRKAVNF 323 (388)
Q Consensus 305 ~vtH~l~~l~~~~d~~~~y 323 (388)
++||+++.+...+|++...
T Consensus 192 i~sH~~~~~~~~~d~i~~l 210 (239)
T cd03296 192 FVTHDQEEALEVADRVVVM 210 (239)
T ss_pred EEeCCHHHHHHhCCEEEEE
Confidence 9999999999988876443
No 58
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.4e-30 Score=241.01 Aligned_cols=191 Identities=20% Similarity=0.232 Sum_probs=136.7
Q ss_pred EEEEEEeeceEEecC----ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 76 IITKIVAFNFKSYAG----YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 76 ~i~~l~~~~fksy~~----~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
.+.+++ ++|++ +.+++ ++||+|.+ |++++|+||||||||||+
T Consensus 2 ~~~~l~----~~~~~~~~~~~il~--------~vs~~i~~----------------------G~~~~i~G~nGsGKSTLl 47 (220)
T cd03293 2 EVRNVS----KTYGGGGGAVTALE--------DISLSVEE----------------------GEFVALVGPSGCGKSTLL 47 (220)
T ss_pred eEEEEE----EEcCCCCcceEEEe--------ceeEEEeC----------------------CcEEEEECCCCCCHHHHH
Confidence 345566 67876 45654 99999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCC
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPG 230 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~ 230 (388)
++|+ |++ ++.+|++.+.|..+. . +.+.+++++|.+..++..+..++........+..... ...+.
T Consensus 48 ~~l~----Gl~-~~~~G~i~~~g~~~~-------~-~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~- 113 (220)
T cd03293 48 RIIA----GLE-RPTSGEVLVDGEPVT-------G-PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAE- 113 (220)
T ss_pred HHHh----CCC-CCCceEEEECCEECc-------c-ccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHH-
Confidence 9999 998 777999877665432 1 2346999999987766556544322111111110000 00000
Q ss_pred ceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 231 TDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 231 ~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
..+...++....++.+..|||||+||+.||++|+. +|+++||||||++| +.+.+.+.++.++...++++
T Consensus 114 ~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~------~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii 187 (220)
T cd03293 114 ELLELVGLSGFENAYPHQLSGGMRQRVALARALAV------DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLL 187 (220)
T ss_pred HHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHc------CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 12222233333466788999999999999999999 99999999999999 77777888776553335999
Q ss_pred HHHhHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKA 320 (388)
Q Consensus 306 vtH~l~~l~~~~d~~ 320 (388)
+||+++.+...+|++
T Consensus 188 ~sH~~~~~~~~~d~i 202 (220)
T cd03293 188 VTHDIDEAVFLADRV 202 (220)
T ss_pred EecCHHHHHHhCCEE
Confidence 999999999888765
No 59
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3e-30 Score=241.74 Aligned_cols=202 Identities=15% Similarity=0.201 Sum_probs=140.5
Q ss_pred EEEEEEeeceEEecC-ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 76 IITKIVAFNFKSYAG-YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 76 ~i~~l~~~~fksy~~-~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
.+.+++ ++|++ +.++. |+||+|.+ |++++|+||||||||||+++|
T Consensus 2 ~~~~l~----~~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l 47 (241)
T cd03256 2 EVENLS----KTYPNGKKALK--------DVSLSINP----------------------GEFVALIGPSGAGKSTLLRCL 47 (241)
T ss_pred EEeeEE----EecCCccEEEe--------cceEEEcC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 345555 67876 56654 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEE-ec-------cccCCC-Cccc
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIH-FA-------QIIDKP-NEEY 225 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~-~~-------~~~~~~-~~~~ 225 (388)
+ |++ ++.+|++.++|..+............+.+++++|++..++..++.++... .. .+.... ....
T Consensus 48 ~----Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~ 122 (241)
T cd03256 48 N----GLV-EPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEK 122 (241)
T ss_pred h----CCc-CCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHH
Confidence 9 998 77899988877543211100011123469999999887776665443211 00 000000 0000
Q ss_pred cccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhh
Q psy14062 226 EIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKL 300 (388)
Q Consensus 226 ~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~ 300 (388)
..+. ..+...++....+..+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.++.++..
T Consensus 123 ~~~~-~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 195 (241)
T cd03256 123 QRAL-AALERVGLLDKAYQRADQLSGGQQQRVAIARALMQ------QPKLILADEPVASLDPASSRQVMDLLKRINREEG 195 (241)
T ss_pred HHHH-HHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhc------CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC
Confidence 0000 11222233334467889999999999999999999 99999999999999 677778888766523
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 301 TRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 301 ~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
.+|+++||+++.+...+|++...
T Consensus 196 ~tii~~tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 196 ITVIVSLHQVDLAREYADRIVGL 218 (241)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEE
Confidence 35999999999999998876443
No 60
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.8e-30 Score=242.22 Aligned_cols=201 Identities=16% Similarity=0.219 Sum_probs=140.7
Q ss_pred EEEEEEEeeceEEecCc----eeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 75 LIITKIVAFNFKSYAGY----VTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~----~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
+.+.+++ ++|+++ .++. ++||+|.+ |++++|+||||||||||
T Consensus 2 i~~~~l~----~~~~~~~~~~~il~--------~~s~~i~~----------------------Ge~~~l~G~nGsGKSTL 47 (233)
T cd03258 2 IELKNVS----KVFGDTGGKVTALK--------DVSLSVPK----------------------GEIFGIIGRSGAGKSTL 47 (233)
T ss_pred eEEecce----EEccCCCCceeeee--------cceEEEcC----------------------CCEEEEECCCCCCHHHH
Confidence 3445555 678765 5554 99999999 99999999999999999
Q ss_pred HhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccC
Q psy14062 151 IDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIP 229 (388)
Q Consensus 151 l~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~ 229 (388)
+++|+ |++ ++.+|++.++|..+.-..........+.+++++|++..++..+..++........+..... ....
T Consensus 48 l~~l~----G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~- 121 (233)
T cd03258 48 IRCIN----GLE-RPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV- 121 (233)
T ss_pred HHHHh----CCC-CCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHH-
Confidence 99999 999 7789998888765431111000112356999999988777666554322111111111000 0000
Q ss_pred CceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHH
Q psy14062 230 GTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQ 304 (388)
Q Consensus 230 ~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii 304 (388)
...+...++....++.+..|||||+||+.||++|+. +|+++|||||+++| ..+...+.+++++...+++
T Consensus 122 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~------~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvi 195 (233)
T cd03258 122 LELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN------NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIV 195 (233)
T ss_pred HHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhc------CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 112222233334456788999999999999999999 99999999999999 6677788887766333599
Q ss_pred HHHHhHHHHHHHHHHHH
Q psy14062 305 LVETDLKALEPELRKAV 321 (388)
Q Consensus 305 ~vtH~l~~l~~~~d~~~ 321 (388)
++||+++.+.+.+|++.
T Consensus 196 i~sH~~~~~~~~~d~i~ 212 (233)
T cd03258 196 LITHEMEVVKRICDRVA 212 (233)
T ss_pred EEeCCHHHHHHhCCEEE
Confidence 99999999999888754
No 61
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=7.9e-30 Score=227.41 Aligned_cols=205 Identities=22% Similarity=0.182 Sum_probs=152.2
Q ss_pred EEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 76 IITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 76 ~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
...+++ .+..++.+++ +|||++.+ |++++|||||||||||||+.++
T Consensus 3 ~a~nls----~~~~Gr~ll~--------~vsl~~~p----------------------Gev~ailGPNGAGKSTlLk~Ls 48 (259)
T COG4559 3 RAENLS----YSLAGRRLLD--------GVSLDLRP----------------------GEVLAILGPNGAGKSTLLKALS 48 (259)
T ss_pred eeeeeE----EEeecceecc--------CcceeccC----------------------CcEEEEECCCCccHHHHHHHhh
Confidence 344555 5678888876 99999999 9999999999999999999999
Q ss_pred hcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCc--cccccCCceE
Q psy14062 156 FRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNE--EYEIIPGTDL 233 (388)
Q Consensus 156 ~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~--~~~~~~~~~l 233 (388)
|-. .+++|++++++..+..+ .+ ...++..++++|++.+-++.++.+|...-..-+..... +...+....+
T Consensus 49 ----Gel-~p~~G~v~~~g~~l~~~--~~-~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~al 120 (259)
T COG4559 49 ----GEL-SPDSGEVTLNGVPLNSW--PP-EELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQAL 120 (259)
T ss_pred ----Ccc-CCCCCeEeeCCcChhhC--CH-HHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHH
Confidence 998 55799998887655322 12 22345578999998876666766654321111111111 1111111122
Q ss_pred EEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 234 ~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH 308 (388)
.........++.+..||||++||+.+||+|++++-....+++|+||||||+| ..+..+.+++.+++.. |+.|-|
T Consensus 121 a~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~-V~~VLH 199 (259)
T COG4559 121 AATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGA-VLAVLH 199 (259)
T ss_pred HHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCc-EEEEEc
Confidence 3333444567888899999999999999999988888788999999999999 6677888888888865 999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy14062 309 DLKALEPELRKAVNF 323 (388)
Q Consensus 309 ~l~~l~~~~d~~~~y 323 (388)
|++.+..+||++.-.
T Consensus 200 DLNLAA~YaDrivll 214 (259)
T COG4559 200 DLNLAAQYADRIVLL 214 (259)
T ss_pred cchHHHHhhheeeee
Confidence 999999999987544
No 62
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.95 E-value=1.8e-30 Score=239.68 Aligned_cols=195 Identities=12% Similarity=0.148 Sum_probs=140.7
Q ss_pred EEEEEEEeeceEEecCc----eeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 75 LIITKIVAFNFKSYAGY----VTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~----~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
+.+.+++ ++|++. .++. ++||+|.+ |++++|+||||||||||
T Consensus 2 l~~~~v~----~~~~~~~~~~~il~--------~~sl~i~~----------------------Ge~~~i~G~nGsGKSTL 47 (218)
T cd03266 2 ITADALT----KRFRDVKKTVQAVD--------GVSFTVKP----------------------GEVTGLLGPNGAGKTTT 47 (218)
T ss_pred eEEEEEE----EecCCCCccceeec--------ceEEEEcC----------------------CcEEEEECCCCCCHHHH
Confidence 4455666 678765 5544 99999999 99999999999999999
Q ss_pred HhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccC
Q psy14062 151 IDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIP 229 (388)
Q Consensus 151 l~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~ 229 (388)
+++|+ |++ ++.+|++.+.|..+. ...... ++.+++++|++..++..++.++...+...++..... ...+
T Consensus 48 l~~l~----Gl~-~~~~G~i~~~g~~~~---~~~~~~-~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~- 117 (218)
T cd03266 48 LRMLA----GLL-EPDAGFATVDGFDVV---KEPAEA-RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARL- 117 (218)
T ss_pred HHHHh----CCc-CCCCceEEECCEEcc---cCHHHH-HhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHH-
Confidence 99999 998 778999888775442 111223 356999999987777666554432211111111100 0110
Q ss_pred CceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHH
Q psy14062 230 GTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQ 304 (388)
Q Consensus 230 ~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii 304 (388)
...+...++....++.+..|||||+||+.+|++|+. +|+++|||||+++| +.+...+.++++++. +++
T Consensus 118 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~-tii 190 (218)
T cd03266 118 EELADRLGMEELLDRRVGGFSTGMRQKVAIARALVH------DPPVLLLDEPTTGLDVMATRALREFIRQLRALGK-CIL 190 (218)
T ss_pred HHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhc------CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCC-EEE
Confidence 112222233333467788999999999999999999 99999999999999 677778887765554 599
Q ss_pred HHHHhHHHHHHHHHHH
Q psy14062 305 LVETDLKALEPELRKA 320 (388)
Q Consensus 305 ~vtH~l~~l~~~~d~~ 320 (388)
++||+++.+...+|++
T Consensus 191 ~~tH~~~~~~~~~d~i 206 (218)
T cd03266 191 FSTHIMQEVERLCDRV 206 (218)
T ss_pred EEeCCHHHHHHhcCEE
Confidence 9999999999888764
No 63
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2e-30 Score=238.17 Aligned_cols=191 Identities=21% Similarity=0.227 Sum_probs=137.5
Q ss_pred EEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 77 i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.+++ ++|+++.++. +|||+|.+ |++++|+||||||||||+++|+
T Consensus 3 ~~~l~----~~~~~~~~l~--------~v~~~i~~----------------------G~~~~i~G~nGsGKSTLl~~l~- 47 (210)
T cd03269 3 VENVT----KRFGRVTALD--------DISFSVEK----------------------GEIFGLLGPNGAGKTTTIRMIL- 47 (210)
T ss_pred EEEEE----EEECCEEEEe--------eeEEEEcC----------------------CcEEEEECCCCCCHHHHHHHHh-
Confidence 45555 6787766654 99999999 9999999999999999999999
Q ss_pred cccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEE
Q psy14062 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIA 236 (388)
Q Consensus 157 ~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (388)
|++ ++.+|++.+.+..+. ....+.+++++|++..++..+..++...+....+.............+...
T Consensus 48 ---G~~-~~~~G~i~~~g~~~~-------~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~ 116 (210)
T cd03269 48 ---GII-LPDSGEVLFDGKPLD-------IAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERL 116 (210)
T ss_pred ---CCC-CCCceEEEECCCchh-------HHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHc
Confidence 998 778999887765432 112346999999987776666554432221111111000000000112222
Q ss_pred EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHH
Q psy14062 237 RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLK 311 (388)
Q Consensus 237 r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~ 311 (388)
++....+..+..|||||+||+.+|++|+. +|+++|+|||+++| +.+...+.++++++. +++++||+++
T Consensus 117 ~l~~~~~~~~~~LS~G~~qrl~la~al~~------~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~-tii~~sH~~~ 189 (210)
T cd03269 117 ELSEYANKRVEELSKGNQQKVQFIAAVIH------DPELLILDEPFSGLDPVNVELLKDVIRELARAGK-TVILSTHQME 189 (210)
T ss_pred CChHHHhCcHhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCC-EEEEECCCHH
Confidence 33233456788999999999999999999 99999999999999 667777777765544 5999999999
Q ss_pred HHHHHHHHH
Q psy14062 312 ALEPELRKA 320 (388)
Q Consensus 312 ~l~~~~d~~ 320 (388)
.+.+.+|++
T Consensus 190 ~~~~~~d~i 198 (210)
T cd03269 190 LVEELCDRV 198 (210)
T ss_pred HHHHhhhEE
Confidence 999988865
No 64
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.95 E-value=2.7e-30 Score=246.39 Aligned_cols=204 Identities=14% Similarity=0.117 Sum_probs=143.1
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|+++.++. ||||+|.+ |++++|+||||||||||+++
T Consensus 7 ~l~~~~l~----~~~~~~~il~--------~vsl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~ 52 (269)
T PRK11831 7 LVDMRGVS----FTRGNRCIFD--------NISLTVPR----------------------GKITAIMGPSGIGKTTLLRL 52 (269)
T ss_pred eEEEeCeE----EEECCEEEEe--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 45666666 6798776655 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccC-CCCcc-ccccCCc
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIID-KPNEE-YEIIPGT 231 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~-~~~~~-~~~~~~~ 231 (388)
|+ |++ ++.+|++.+.|..+.-.........++.++++||++..++..+..++......... ..... .... ..
T Consensus 53 l~----Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~-~~ 126 (269)
T PRK11831 53 IG----GQI-APDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTV-MM 126 (269)
T ss_pred Hh----CCC-CCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHH-HH
Confidence 99 998 77899988876543211111111123469999999887776665543221101000 00000 0000 01
Q ss_pred eEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHH
Q psy14062 232 DLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLV 306 (388)
Q Consensus 232 ~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~v 306 (388)
.+...++....+..+..|||||+||+.||++|+. +|+++||||||++| +.+...+.++.++...+++++
T Consensus 127 ~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiiv 200 (269)
T PRK11831 127 KLEAVGLRGAAKLMPSELSGGMARRAALARAIAL------EPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVV 200 (269)
T ss_pred HHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 1222233334567789999999999999999999 99999999999999 677778888766533359999
Q ss_pred HHhHHHHHHHHHHHHHH
Q psy14062 307 ETDLKALEPELRKAVNF 323 (388)
Q Consensus 307 tH~l~~l~~~~d~~~~y 323 (388)
||+++.+.+.+|++...
T Consensus 201 sH~~~~~~~~~d~v~~l 217 (269)
T PRK11831 201 SHDVPEVLSIADHAYIV 217 (269)
T ss_pred ecCHHHHHHhhCEEEEE
Confidence 99999999998876433
No 65
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.95 E-value=2.1e-30 Score=253.71 Aligned_cols=211 Identities=10% Similarity=0.124 Sum_probs=145.0
Q ss_pred CcEEEEEEEeeceEEecCcee--e--cC-CCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCCh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVT--L--GP-FNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGK 147 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~--l--~~-f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGK 147 (388)
+.+.+.+|+ ++|+...- + .+ -...+|+||||+|.+ |++++|+|+|||||
T Consensus 7 ~~l~v~~l~----~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~----------------------Ge~~~lvG~sGsGK 60 (331)
T PRK15079 7 VLLEVADLK----VHFDIKDGKQWFWQPPKTLKAVDGVTLRLYE----------------------GETLGVVGESGCGK 60 (331)
T ss_pred ceEEEeCeE----EEECCCCccccccccCCceEEEeeEEEEEcC----------------------CCEEEEECCCCCCH
Confidence 467788888 77853110 0 00 012356799999999 99999999999999
Q ss_pred hhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCcc-chhhhhccceeEeccc--CCCCCcceEEEEEEeccccC--CCC
Q psy14062 148 SNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKS--DQVGGVSRCSVAIHFAQIID--KPN 222 (388)
Q Consensus 148 STLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~-~~~lr~~~i~~l~q~~--~~~~~~~~~eV~~~~~~~~~--~~~ 222 (388)
|||+++|+ |++ ++.+|++.++|..+.-+... ....| +.++|+||++ .++|..+..++.......+. ...
T Consensus 61 STLlk~i~----Gl~-~p~~G~I~~~G~~i~~~~~~~~~~~r-~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~ 134 (331)
T PRK15079 61 STFARAII----GLV-KATDGEVAWLGKDLLGMKDDEWRAVR-SDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSR 134 (331)
T ss_pred HHHHHHHH----CCC-CCCCcEEEECCEECCcCCHHHHHHHh-CceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCH
Confidence 99999999 998 77899998887765432221 11233 4699999997 45565654443211101110 111
Q ss_pred ccccccCCceEEEEEE-eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHH
Q psy14062 223 EEYEIIPGTDLEIART-AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEER 296 (388)
Q Consensus 223 ~~~~~~~~~~l~~~r~-~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~ 296 (388)
..........+...++ ....++.+..|||||+||+.||++|+. +|++||+||||++| .++..++.+++
T Consensus 135 ~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~------~P~llilDEPts~LD~~~~~~i~~lL~~l~ 208 (331)
T PRK15079 135 QEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALIL------EPKLIICDEPVSALDVSIQAQVVNLLQQLQ 208 (331)
T ss_pred HHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhc------CCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 1100000011222222 123467889999999999999999999 99999999999999 77888888887
Q ss_pred HHhhhHHHHHHHhHHHHHHHHHHHH
Q psy14062 297 TEKLTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 297 ~e~~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
++...+++++|||+..+.+++|++.
T Consensus 209 ~~~~~til~iTHdl~~~~~~~dri~ 233 (331)
T PRK15079 209 REMGLSLIFIAHDLAVVKHISDRVL 233 (331)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEEE
Confidence 7634469999999999999998763
No 66
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.95 E-value=2.9e-30 Score=250.08 Aligned_cols=195 Identities=16% Similarity=0.212 Sum_probs=145.0
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ |+|++..+++ |+||+|.+ |++++|+||||||||||+++|
T Consensus 3 l~~~~l~----~~~~~~~~l~--------~is~~i~~----------------------Gei~~l~G~NGaGKTTLl~~l 48 (301)
T TIGR03522 3 IRVSSLT----KLYGTQNALD--------EVSFEAQK----------------------GRIVGFLGPNGAGKSTTMKII 48 (301)
T ss_pred EEEEEEE----EEECCEEEEE--------EeEEEEeC----------------------CeEEEEECCCCCCHHHHHHHH
Confidence 4455666 7898777755 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCCceE
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGTDL 233 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~~l 233 (388)
+ |++ ++.+|++.+.|..+.. ..... .+.++|++|.+.+++..++.++..++...++..... .... ...+
T Consensus 49 ~----Gl~-~~~~G~i~i~g~~~~~---~~~~~-~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~-~~~l 118 (301)
T TIGR03522 49 T----GYL-PPDSGSVQVCGEDVLQ---NPKEV-QRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRV-EEMI 118 (301)
T ss_pred h----CCC-CCCceEEEECCEEccc---ChHHH-HhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-HHHH
Confidence 9 998 7789998887754421 11222 346999999988887777666543332222211110 0111 1122
Q ss_pred EEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 234 ~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH 308 (388)
...++....++.+..|||||+||+.+|++|+. +|+++|||||+++| +.+...+.++++ + .+|+++||
T Consensus 119 ~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~------~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~-~tiii~sH 190 (301)
T TIGR03522 119 ELVGLRPEQHKKIGQLSKGYRQRVGLAQALIH------DPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-D-KTIILSTH 190 (301)
T ss_pred HHCCCchHhcCchhhCCHHHHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-C-CEEEEEcC
Confidence 22233344567888999999999999999999 99999999999999 777778887754 4 46999999
Q ss_pred hHHHHHHHHHHHH
Q psy14062 309 DLKALEPELRKAV 321 (388)
Q Consensus 309 ~l~~l~~~~d~~~ 321 (388)
++++++++||++.
T Consensus 191 ~l~~~~~~~d~i~ 203 (301)
T TIGR03522 191 IMQEVEAICDRVI 203 (301)
T ss_pred CHHHHHHhCCEEE
Confidence 9999999999863
No 67
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.95 E-value=2.8e-30 Score=237.65 Aligned_cols=194 Identities=10% Similarity=0.175 Sum_probs=138.1
Q ss_pred EEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 77 i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.+++ ++|+++.++. |+||+|.+ |++++|+||||||||||+++|+
T Consensus 3 ~~~l~----~~~~~~~~l~--------~is~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~l~- 47 (213)
T cd03301 3 LENVT----KRFGNVTALD--------DLNLDIAD----------------------GEFVVLLGPSGCGKTTTLRMIA- 47 (213)
T ss_pred EEeeE----EEECCeeeee--------ceEEEEcC----------------------CcEEEEECCCCCCHHHHHHHHh-
Confidence 44555 6788766654 99999999 9999999999999999999999
Q ss_pred cccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEE
Q psy14062 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIA 236 (388)
Q Consensus 157 ~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (388)
|++ ++.+|++.+.|..+... . ...+.+++++|++..++..+..++........+.............+...
T Consensus 48 ---G~~-~~~~G~v~~~g~~~~~~--~---~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (213)
T cd03301 48 ---GLE-EPTSGRIYIGGRDVTDL--P---PKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELL 118 (213)
T ss_pred ---CCC-CCCceEEEECCEECCcC--C---cccceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 998 77899988877544211 1 11246999999987776666544322111111111111000000112222
Q ss_pred EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHH
Q psy14062 237 RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLK 311 (388)
Q Consensus 237 r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~ 311 (388)
++....+..+..|||||+||+.+|++|.. +|+++|||||+++| +.+...+.+++++...+++++||+++
T Consensus 119 ~l~~~~~~~~~~LS~G~~qr~~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~ 192 (213)
T cd03301 119 QIEHLLDRKPKQLSGGQRQRVALGRAIVR------EPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV 192 (213)
T ss_pred CCHHHHhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 33334467788999999999999999999 99999999999999 67777888877653335999999999
Q ss_pred HHHHHHHHH
Q psy14062 312 ALEPELRKA 320 (388)
Q Consensus 312 ~l~~~~d~~ 320 (388)
.+...++++
T Consensus 193 ~~~~~~d~i 201 (213)
T cd03301 193 EAMTMADRI 201 (213)
T ss_pred HHHHhcCeE
Confidence 999888765
No 68
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=5.6e-30 Score=234.41 Aligned_cols=183 Identities=19% Similarity=0.170 Sum_probs=132.4
Q ss_pred EEecC-ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcC
Q psy14062 86 KSYAG-YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGP 164 (388)
Q Consensus 86 ksy~~-~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGp 164 (388)
++|++ ..++. ++||+|.+ |++++|+|||||||||||++|+ |++ +
T Consensus 7 ~~~~~~~~~l~--------~v~~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l~----Gl~-~ 51 (205)
T cd03226 7 FSYKKGTEILD--------DLSLDLYA----------------------GEIIALTGKNGAGKTTLAKILA----GLI-K 51 (205)
T ss_pred EEeCCcCceee--------eeeEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh----cCC-C
Confidence 67876 55654 99999999 9999999999999999999999 998 7
Q ss_pred CCCCcceeehhhhhhcCccchhhhhccceeEecccCC-CCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCC
Q psy14062 165 NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQ-VGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDN 243 (388)
Q Consensus 165 ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~-~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~ 243 (388)
+.+|++.+.|..+.. ..+.+.++|++|++.. ++..+..++...+..... ... ... ...+...++..+.+
T Consensus 52 p~~G~i~~~g~~~~~------~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~--~~~-~~~-~~~l~~~~l~~~~~ 121 (205)
T cd03226 52 ESSGSILLNGKPIKA------KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD--AGN-EQA-ETVLKDLDLYALKE 121 (205)
T ss_pred CCceEEEECCEEhhh------HHhhcceEEEecChhhhhhhccHHHHHhhhhhhcC--ccH-HHH-HHHHHHcCCchhcC
Confidence 789998887754421 1233569999998642 223344433222111111 000 000 01222223333456
Q ss_pred CCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHH
Q psy14062 244 SSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELR 318 (388)
Q Consensus 244 ~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d 318 (388)
+.+..|||||+||+.+|++|+. +|+++|||||+++| +.+...+.++++++. +++++||+++.+...+|
T Consensus 122 ~~~~~LS~G~~qrv~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-tii~~sH~~~~~~~~~d 194 (205)
T cd03226 122 RHPLSLSGGQKQRLAIAAALLS------GKDLLIFDEPTSGLDYKNMERVGELIRELAAQGK-AVIVITHDYEFLAKVCD 194 (205)
T ss_pred CCchhCCHHHHHHHHHHHHHHh------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHhCC
Confidence 7788999999999999999999 99999999999999 777778887766554 59999999999988887
Q ss_pred HH
Q psy14062 319 KA 320 (388)
Q Consensus 319 ~~ 320 (388)
++
T Consensus 195 ~i 196 (205)
T cd03226 195 RV 196 (205)
T ss_pred EE
Confidence 64
No 69
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=6e-30 Score=238.83 Aligned_cols=198 Identities=19% Similarity=0.183 Sum_probs=138.1
Q ss_pred CcEEEEEEEeeceEEecC----ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChh
Q psy14062 73 PRLIITKIVAFNFKSYAG----YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKS 148 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~----~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKS 148 (388)
|++.+.+++ ++|++ ..+| +++||+|.+ |++++|+||||||||
T Consensus 4 ~~l~~~~l~----~~~~~~~~~~~il--------~~isl~i~~----------------------Ge~~~l~G~nGsGKS 49 (233)
T PRK11629 4 ILLQCDNLC----KRYQEGSVQTDVL--------HNVSFSIGE----------------------GEMMAIVGSSGSGKS 49 (233)
T ss_pred ceEEEEeEE----EEcCCCCcceeeE--------EeeEEEEcC----------------------CcEEEEECCCCCCHH
Confidence 356777777 77864 2444 499999999 999999999999999
Q ss_pred hHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccc-hhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-c
Q psy14062 149 NVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRA-SKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-E 226 (388)
Q Consensus 149 TLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~-~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~ 226 (388)
||+++|+ |++ ++.+|++.++|..+....... ...+.+.+++++|++..++..+..++..+...+.+...... .
T Consensus 50 TLl~~l~----Gl~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 124 (233)
T PRK11629 50 TLLHLLG----GLD-TPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINS 124 (233)
T ss_pred HHHHHHh----cCC-CCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH
Confidence 9999999 998 788999888775443211110 11233569999999877776665543221101111111110 0
Q ss_pred ccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhh
Q psy14062 227 IIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLT 301 (388)
Q Consensus 227 ~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~ 301 (388)
.+ ...+...++....++.+..|||||+||+.+|++|+. +|+++|||||+++| +.+...+.+++++...
T Consensus 125 ~~-~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~ 197 (233)
T PRK11629 125 RA-LEMLAAVGLEHRANHRPSELSGGERQRVAIARALVN------NPRLVLADEPTGNLDARNADSIFQLLGELNRLQGT 197 (233)
T ss_pred HH-HHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 11 112222333334466788999999999999999999 99999999999999 6777788877654333
Q ss_pred HHHHHHHhHHHHHHH
Q psy14062 302 RVQLVETDLKALEPE 316 (388)
Q Consensus 302 ~ii~vtH~l~~l~~~ 316 (388)
+++++||+++.+...
T Consensus 198 tvii~sH~~~~~~~~ 212 (233)
T PRK11629 198 AFLVVTHDLQLAKRM 212 (233)
T ss_pred EEEEEeCCHHHHHhh
Confidence 599999999988764
No 70
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.95 E-value=4e-30 Score=239.11 Aligned_cols=201 Identities=16% Similarity=0.153 Sum_probs=138.7
Q ss_pred CcEEEEEEEeeceEEecCc----eeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChh
Q psy14062 73 PRLIITKIVAFNFKSYAGY----VTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKS 148 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~----~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKS 148 (388)
+++.+.+++ ++|++. .++ +++||+|.+ |++++|+||||||||
T Consensus 5 ~~l~~~~l~----~~~~~~~~~~~~l--------~~~s~~i~~----------------------Ge~~~i~G~nGsGKS 50 (228)
T PRK10584 5 NIVEVHHLK----KSVGQGEHELSIL--------TGVELVVKR----------------------GETIALIGESGSGKS 50 (228)
T ss_pred ceEEEeeeE----EEccCCCcceEEE--------eccEEEEcC----------------------CCEEEEECCCCCCHH
Confidence 456677777 778752 344 499999999 999999999999999
Q ss_pred hHHhhhhhcccEEEcCCCCCcceeehhhhhhcCcc-chhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-cc
Q psy14062 149 NVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YE 226 (388)
Q Consensus 149 TLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~-~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~ 226 (388)
||+++|+ |++ ++.+|++.+.|..+.-.... ....+.+.+++++|++..++..+..++........+..... ..
T Consensus 51 TLl~~i~----Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~ 125 (228)
T PRK10584 51 TLLAILA----GLD-DGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRN 125 (228)
T ss_pred HHHHHHH----cCC-CCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHH
Confidence 9999999 998 78899988776543211110 01133456999999987776655544322110111111000 00
Q ss_pred ccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhh
Q psy14062 227 IIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLT 301 (388)
Q Consensus 227 ~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~ 301 (388)
.+ ...+...++....+..+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.+++++...
T Consensus 126 ~~-~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 198 (228)
T PRK10584 126 GA-KALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG------RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGT 198 (228)
T ss_pred HH-HHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 00 112222233333456788999999999999999999 99999999999999 6777788887665333
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q psy14062 302 RVQLVETDLKALEPELRKA 320 (388)
Q Consensus 302 ~ii~vtH~l~~l~~~~d~~ 320 (388)
+|+++||+++.++. +|++
T Consensus 199 tii~~sH~~~~~~~-~d~i 216 (228)
T PRK10584 199 TLILVTHDLQLAAR-CDRR 216 (228)
T ss_pred EEEEEecCHHHHHh-CCEE
Confidence 59999999998754 6654
No 71
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.95 E-value=3.6e-30 Score=238.31 Aligned_cols=197 Identities=17% Similarity=0.209 Sum_probs=139.7
Q ss_pred EEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 77 i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.+++ ++|++..+++ ++||+|.+ |++++|+||||||||||+++|+
T Consensus 3 ~~~l~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l~- 47 (222)
T cd03224 3 VENLN----AGYGKSQILF--------GVSLTVPE----------------------GEIVALLGRNGAGKTTLLKTIM- 47 (222)
T ss_pred EeeEE----eecCCeeEee--------eeeEEEcC----------------------CeEEEEECCCCCCHHHHHHHHh-
Confidence 45555 6788766654 99999999 9999999999999999999999
Q ss_pred cccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEE
Q psy14062 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIA 236 (388)
Q Consensus 157 ~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (388)
|++ ++.+|++.+++..+.. ......+++.++++||++..++..+..++......... ......... ..+...
T Consensus 48 ---Gl~-~~~~G~i~~~g~~~~~--~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-~~~~~~~~~-~~l~~~ 119 (222)
T cd03224 48 ---GLL-PPRSGSIRFDGRDITG--LPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-RAKRKARLE-RVYELF 119 (222)
T ss_pred ---CCC-CCCCceEEECCEEcCC--CCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-chhHHHHHH-HHHHHH
Confidence 998 7789998887754321 11122234569999999887776665543221111111 000000000 011111
Q ss_pred -EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhH
Q psy14062 237 -RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDL 310 (388)
Q Consensus 237 -r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l 310 (388)
......+..+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.++.+.+. +++++||++
T Consensus 120 ~~l~~~~~~~~~~LS~G~~qrv~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-tiii~sH~~ 192 (222)
T cd03224 120 PRLKERRKQLAGTLSGGEQQMLAIARALMS------RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGV-TILLVEQNA 192 (222)
T ss_pred HhhhhhhhCchhhCCHHHHHHHHHHHHHhc------CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 12223456788999999999999999999 99999999999999 677778877765444 599999999
Q ss_pred HHHHHHHHHHHHH
Q psy14062 311 KALEPELRKAVNF 323 (388)
Q Consensus 311 ~~l~~~~d~~~~y 323 (388)
+.+.+.+|++...
T Consensus 193 ~~~~~~~d~i~~l 205 (222)
T cd03224 193 RFALEIADRAYVL 205 (222)
T ss_pred HHHHHhccEEEEe
Confidence 9999999876443
No 72
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=4.1e-30 Score=236.17 Aligned_cols=190 Identities=25% Similarity=0.278 Sum_probs=132.7
Q ss_pred EEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEc
Q psy14062 86 KSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIG 163 (388)
Q Consensus 86 ksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiG 163 (388)
++|++ +.++. ++||+|.+ |++++|+||||||||||+++|+ |++
T Consensus 7 ~~~~~~~~~il~--------~vs~~i~~----------------------G~~~~l~G~nGsGKSTLl~~l~----G~~- 51 (211)
T cd03225 7 FSYPDGARPALD--------DISLTIKK----------------------GEFVLIVGPNGSGKSTLLRLLN----GLL- 51 (211)
T ss_pred EecCCCCeeeec--------ceEEEEcC----------------------CcEEEEECCCCCCHHHHHHHHh----cCC-
Confidence 67876 55654 99999999 9999999999999999999999 998
Q ss_pred CCCCCcceeehhhhhhcCccchhhhhccceeEecccCC-CCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeC
Q psy14062 164 PNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQ-VGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYD 242 (388)
Q Consensus 164 pngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~-~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~ 242 (388)
++.+|++.+++..+.. ... ..+.+.++|++|.+.. ++..+..++........+.............+...++....
T Consensus 52 ~~~~G~i~~~g~~~~~--~~~-~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 128 (211)
T cd03225 52 GPTSGEVLVDGKDLTK--LSL-KELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLR 128 (211)
T ss_pred CCCCceEEECCEEccc--CCH-HHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhh
Confidence 7789998887754421 111 1223569999998642 34444443322111111111000000000112222222334
Q ss_pred CCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHH
Q psy14062 243 NSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPEL 317 (388)
Q Consensus 243 ~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~ 317 (388)
++.+..|||||+||+.+|++|+. +|+++||||||++| +.+...+.++++++. +++++||+++.+...|
T Consensus 129 ~~~~~~LSgG~~qrv~laral~~------~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~-tvi~~sH~~~~~~~~~ 201 (211)
T cd03225 129 DRSPFTLSGGQKQRVAIAGVLAM------DPDILLLDEPTAGLDPAGRRELLELLKKLKAEGK-TIIIVTHDLDLLLELA 201 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHhC
Confidence 56788999999999999999999 99999999999999 777778887776544 5999999999999888
Q ss_pred HHH
Q psy14062 318 RKA 320 (388)
Q Consensus 318 d~~ 320 (388)
|++
T Consensus 202 d~i 204 (211)
T cd03225 202 DRV 204 (211)
T ss_pred CEE
Confidence 865
No 73
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.5e-30 Score=246.47 Aligned_cols=208 Identities=19% Similarity=0.242 Sum_probs=140.6
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.++. ++|++.. ++...+|+||||+|.+ |++++|+||||||||||+++|
T Consensus 3 l~~~~l~----~~y~~~~---~~~~~~l~~vs~~i~~----------------------Ge~~~i~G~nGaGKSTLl~~l 53 (287)
T PRK13637 3 IKIENLT----HIYMEGT---PFEKKALDNVNIEIED----------------------GEFVGLIGHTGSGKSTLIQHL 53 (287)
T ss_pred EEEEEEE----EECCCCC---ccccceeeeeEEEEcC----------------------CCEEEEECCCCCcHHHHHHHH
Confidence 4556666 6786421 0111245699999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccC-CCCCcceEEEEEEeccccCCCCccccccCCceE
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD-QVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~-~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l 233 (388)
+ |++ ++.+|++.+.|..+......... ++..++|+||++. .+...++.++..+.....+.............+
T Consensus 54 ~----Gl~-~p~~G~i~~~g~~~~~~~~~~~~-~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l 127 (287)
T PRK13637 54 N----GLL-KPTSGKIIIDGVDITDKKVKLSD-IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAM 127 (287)
T ss_pred h----cCC-CCCccEEEECCEECCCcCccHHH-HhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHH
Confidence 9 998 77899988877644211111112 2357999999864 222334443222111111111110000001123
Q ss_pred EEEEEe--eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHH
Q psy14062 234 EIARTA--FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLV 306 (388)
Q Consensus 234 ~~~r~~--~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~v 306 (388)
...++. ...++.+..|||||+||+.||++|+. +|++|||||||++| ..+.+.+.++.++...+|+++
T Consensus 128 ~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~------~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~v 201 (287)
T PRK13637 128 NIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM------EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILV 201 (287)
T ss_pred HHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc------CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 333432 23567889999999999999999999 99999999999999 778888888876533359999
Q ss_pred HHhHHHHHHHHHHHHHH
Q psy14062 307 ETDLKALEPELRKAVNF 323 (388)
Q Consensus 307 tH~l~~l~~~~d~~~~y 323 (388)
||+++.+.+.||++..+
T Consensus 202 tHd~~~~~~~~drv~~l 218 (287)
T PRK13637 202 SHSMEDVAKLADRIIVM 218 (287)
T ss_pred eCCHHHHHHhCCEEEEE
Confidence 99999999999876433
No 74
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.95 E-value=4.7e-30 Score=235.35 Aligned_cols=190 Identities=17% Similarity=0.195 Sum_probs=138.3
Q ss_pred EEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 76 IITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 76 ~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.+.+++ ++|++..++. ++||++.+ |++++|+||||||||||+++|+
T Consensus 2 ~~~~l~----~~~~~~~~l~--------~~~~~i~~----------------------G~~~~i~G~nGsGKSTLl~~l~ 47 (208)
T cd03268 2 KTNDLT----KTYGKKRVLD--------DISLHVKK----------------------GEIYGFLGPNGAGKTTTMKIIL 47 (208)
T ss_pred EEEEEE----EEECCeEeEe--------eeEEEEcC----------------------CcEEEEECCCCCCHHHHHHHHh
Confidence 345555 6787766654 99999999 9999999999999999999999
Q ss_pred hcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEE
Q psy14062 156 FRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEI 235 (388)
Q Consensus 156 ~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~ 235 (388)
|+. ++.+|++.+.|..+.- .... .+.+++++|++..++..++.++...+....+.... ... ..+..
T Consensus 48 ----Gl~-~~~~G~i~~~g~~~~~----~~~~-~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~---~~~-~~l~~ 113 (208)
T cd03268 48 ----GLI-KPDSGEITFDGKSYQK----NIEA-LRRIGALIEAPGFYPNLTARENLRLLARLLGIRKK---RID-EVLDV 113 (208)
T ss_pred ----CCc-CCCceEEEECCCcccc----hHHH-HhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHH---HHH-HHHHH
Confidence 998 7789998887764321 1122 34699999998777666655443221111111100 000 11222
Q ss_pred EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhH
Q psy14062 236 ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDL 310 (388)
Q Consensus 236 ~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l 310 (388)
.++....++.+..|||||+||+.+|++|+. +|+++||||||++| +.+...+.++++++. +++++||++
T Consensus 114 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-tii~~tH~~ 186 (208)
T cd03268 114 VGLKDSAKKKVKGFSLGMKQRLGIALALLG------NPDLLILDEPTNGLDPDGIKELRELILSLRDQGI-TVLISSHLL 186 (208)
T ss_pred cCCHHHHhhhHhhCCHHHHHHHHHHHHHhc------CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence 233333456788999999999999999999 99999999999999 667778877766544 599999999
Q ss_pred HHHHHHHHHH
Q psy14062 311 KALEPELRKA 320 (388)
Q Consensus 311 ~~l~~~~d~~ 320 (388)
+.+...+|++
T Consensus 187 ~~~~~~~d~v 196 (208)
T cd03268 187 SEIQKVADRI 196 (208)
T ss_pred HHHHHhcCEE
Confidence 9999888765
No 75
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.95 E-value=5.3e-30 Score=235.69 Aligned_cols=196 Identities=17% Similarity=0.166 Sum_probs=139.0
Q ss_pred EEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 77 i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.+++ ++|++..++. ++||++.+ |++++|+||||||||||+++|+
T Consensus 3 ~~~l~----~~~~~~~~l~--------~~s~~i~~----------------------G~~~~l~G~nGsGKSTLl~~l~- 47 (213)
T cd03262 3 IKNLH----KSFGDFHVLK--------GIDLTVKK----------------------GEVVVIIGPSGSGKSTLLRCIN- 47 (213)
T ss_pred EEEEE----EEECCeEeec--------CceEEECC----------------------CCEEEEECCCCCCHHHHHHHHh-
Confidence 45555 6788766654 99999999 9999999999999999999999
Q ss_pred cccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEecc-ccCCCCcc-ccccCCceEE
Q psy14062 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ-IIDKPNEE-YEIIPGTDLE 234 (388)
Q Consensus 157 ~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~-~~~~~~~~-~~~~~~~~l~ 234 (388)
|++ ++.+|++.+.|..+...... .....+.+++++|++..++..+..++...... ..+..... .... ...+.
T Consensus 48 ---G~~-~~~~G~i~~~g~~~~~~~~~-~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~-~~~l~ 121 (213)
T cd03262 48 ---LLE-EPDSGTIIIDGLKLTDDKKN-INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERA-LELLE 121 (213)
T ss_pred ---CCC-CCCCceEEECCEECCccchh-HHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHH-HHHHH
Confidence 998 77899988877644210111 11223569999999887766665543322110 11111000 0000 01122
Q ss_pred EEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHh
Q psy14062 235 IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETD 309 (388)
Q Consensus 235 ~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~ 309 (388)
..++....++.+..|||||+||+.+|++|+. +|+++|||||+++| +.+...+.++++++. +++++||+
T Consensus 122 ~~~l~~~~~~~~~~LS~G~~qrv~la~al~~------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~-tvi~~sh~ 194 (213)
T cd03262 122 KVGLADKADAYPAQLSGGQQQRVAIARALAM------NPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGM-TMVVVTHE 194 (213)
T ss_pred HcCCHhHhhhCccccCHHHHHHHHHHHHHhc------CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCC-EEEEEeCC
Confidence 2233333467789999999999999999999 99999999999999 667778888776544 59999999
Q ss_pred HHHHHHHHHHH
Q psy14062 310 LKALEPELRKA 320 (388)
Q Consensus 310 l~~l~~~~d~~ 320 (388)
++.+.+.+|++
T Consensus 195 ~~~~~~~~d~i 205 (213)
T cd03262 195 MGFAREVADRV 205 (213)
T ss_pred HHHHHHhCCEE
Confidence 99999888764
No 76
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.95 E-value=5.9e-30 Score=236.76 Aligned_cols=199 Identities=21% Similarity=0.202 Sum_probs=136.7
Q ss_pred EEEEEEEeeceEEecC----ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 75 LIITKIVAFNFKSYAG----YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 75 l~i~~l~~~~fksy~~----~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
+.+.+++ ++|++ ..++ +++||+|.+ |++++|+||||||||||
T Consensus 2 l~~~~v~----~~~~~~~~~~~~l--------~~isl~i~~----------------------G~~~~i~G~nGsGKSTL 47 (221)
T TIGR02211 2 LKCENLG----KRYQEGKLDTRVL--------KGVSLSIGK----------------------GEIVAIVGSSGSGKSTL 47 (221)
T ss_pred EEEEeee----EEccCCCcceEeE--------eeeEEEEcC----------------------CcEEEEECCCCCCHHHH
Confidence 3455565 67864 3454 499999999 99999999999999999
Q ss_pred HhhhhhcccEEEcCCCCCcceeehhhhhhcCcc-chhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-cccc
Q psy14062 151 IDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEII 228 (388)
Q Consensus 151 l~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~-~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~ 228 (388)
+++|+ |+. ++.+|++.+.|..+.-.... ....|.+.++|++|++..++..+..++.............. ...+
T Consensus 48 l~~i~----G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~ 122 (221)
T TIGR02211 48 LHLLG----GLD-NPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERA 122 (221)
T ss_pred HHHHh----CCC-CCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHH
Confidence 99999 998 77899988877654321111 01123356999999987776666554322110111111000 0001
Q ss_pred CCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHH
Q psy14062 229 PGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRV 303 (388)
Q Consensus 229 ~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~i 303 (388)
...+...++....++.+..|||||+||+.+|++|+. +|+++||||||++| +.+...+.+++++...++
T Consensus 123 -~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti 195 (221)
T TIGR02211 123 -YEMLEKVGLEHRINHRPSELSGGERQRVAIARALVN------QPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSF 195 (221)
T ss_pred -HHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC------CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 112222233333467788999999999999999999 99999999999999 667778887766533459
Q ss_pred HHHHHhHHHHHHHHHHH
Q psy14062 304 QLVETDLKALEPELRKA 320 (388)
Q Consensus 304 i~vtH~l~~l~~~~d~~ 320 (388)
+++||+++.+.. +|++
T Consensus 196 i~~tH~~~~~~~-~d~v 211 (221)
T TIGR02211 196 LVVTHDLELAKK-LDRV 211 (221)
T ss_pred EEEeCCHHHHhh-cCEE
Confidence 999999988754 5653
No 77
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=6e-30 Score=242.17 Aligned_cols=195 Identities=17% Similarity=0.212 Sum_probs=139.5
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|+++.++. |+||+|.+ |++++|+||||||||||+++|
T Consensus 2 l~~~~l~----~~~~~~~il~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l 47 (255)
T PRK11248 2 LQISHLY----ADYGGKPALE--------DINLTLES----------------------GELLVVLGPSGCGKTTLLNLI 47 (255)
T ss_pred EEEEEEE----EEeCCeeeEe--------eeeEEECC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 4566666 7788766654 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cccCCceE
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EIIPGTDL 233 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~~~~l 233 (388)
+ |++ ++.+|++.+.|..+. .. ...+++++|.+..++..++.++........+...... ..+. ..+
T Consensus 48 ~----Gl~-~p~~G~i~~~g~~~~-------~~-~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-~~l 113 (255)
T PRK11248 48 A----GFV-PYQHGSITLDGKPVE-------GP-GAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAH-QML 113 (255)
T ss_pred h----CCC-CCCCcEEEECCEECC-------CC-CCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHH-HHH
Confidence 9 998 778999877665432 11 1348999999877766665443321111111111000 0000 112
Q ss_pred EEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 234 ~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH 308 (388)
...++....++++..|||||+||+.+|++|+. +|++|||||||++| ..+...+.++.++...+++++||
T Consensus 114 ~~~gl~~~~~~~~~~LSgGq~qrl~laral~~------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH 187 (255)
T PRK11248 114 KKVGLEGAEKRYIWQLSGGQRQRVGIARALAA------NPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITH 187 (255)
T ss_pred HHcCChhHhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 22233233456789999999999999999999 99999999999999 67777887775432335999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy14062 309 DLKALEPELRKAVNF 323 (388)
Q Consensus 309 ~l~~l~~~~d~~~~y 323 (388)
+++.+...||++...
T Consensus 188 ~~~~~~~~~d~i~~l 202 (255)
T PRK11248 188 DIEEAVFMATELVLL 202 (255)
T ss_pred CHHHHHHhCCEEEEE
Confidence 999999999987554
No 78
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.95 E-value=3e-30 Score=256.04 Aligned_cols=194 Identities=16% Similarity=0.173 Sum_probs=141.3
Q ss_pred EEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC
Q psy14062 86 KSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN 165 (388)
Q Consensus 86 ksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn 165 (388)
++|+...++ +||||+|.+ |++++|+||||||||||+++|+ |++ ++
T Consensus 32 ~~~g~~~~l--------~~vsf~i~~----------------------Gei~~I~G~nGsGKSTLlr~L~----Gl~-~p 76 (382)
T TIGR03415 32 DETGLVVGV--------ANASLDIEE----------------------GEICVLMGLSGSGKSSLLRAVN----GLN-PV 76 (382)
T ss_pred HhhCCEEEE--------EeeEEEEcC----------------------CCEEEEECCCCCcHHHHHHHHh----CCC-CC
Confidence 567766654 499999999 9999999999999999999999 998 78
Q ss_pred CCCcceeehhh----hhhcCc-cchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEee
Q psy14062 166 GSGKSNVIDSM----LFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAF 240 (388)
Q Consensus 166 gSGKs~i~da~----i~vlg~-~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~ 240 (388)
.+|++.+.|.. +.-... .....|.++++|+||++.+++..++.++..+.....+.............+...++..
T Consensus 77 ~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~ 156 (382)
T TIGR03415 77 SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQ 156 (382)
T ss_pred CCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch
Confidence 89999887742 211111 1123455679999999998887776654332111111111110000111233344445
Q ss_pred eCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHH
Q psy14062 241 YDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEP 315 (388)
Q Consensus 241 ~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~ 315 (388)
+.+..+..|||||+||+.||++|+. +|++||||||+++| .++...+.++.++...+++++||+++++.+
T Consensus 157 ~~~~~~~~LSgGq~QRV~LARALa~------~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~ 230 (382)
T TIGR03415 157 WADKKPGELSGGMQQRVGLARAFAM------DADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALK 230 (382)
T ss_pred hhcCChhhCCHHHHHHHHHHHHHhc------CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 5677889999999999999999999 99999999999999 667777877776533469999999999999
Q ss_pred HHHHH
Q psy14062 316 ELRKA 320 (388)
Q Consensus 316 ~~d~~ 320 (388)
.+|++
T Consensus 231 l~DrI 235 (382)
T TIGR03415 231 IGNRI 235 (382)
T ss_pred hCCEE
Confidence 98866
No 79
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.95 E-value=9.2e-30 Score=236.36 Aligned_cols=202 Identities=18% Similarity=0.165 Sum_probs=137.2
Q ss_pred EEEEEEEeeceEEecCc----eeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 75 LIITKIVAFNFKSYAGY----VTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~----~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
+.+.+++ ++|++. .++ +|+||+|.+ |++++|+||||||||||
T Consensus 2 l~~~~v~----~~~~~~~~~~~~l--------~~vs~~i~~----------------------Ge~~~i~G~nGsGKSTL 47 (228)
T cd03257 2 LEVKNLS----VSFPTGGGSVKAL--------DDVSFSIKK----------------------GETLGLVGESGSGKSTL 47 (228)
T ss_pred eEEEeee----EeccCCCcceeee--------cCceeEEcC----------------------CCEEEEECCCCCCHHHH
Confidence 4455666 678754 454 499999999 99999999999999999
Q ss_pred HhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccC--CCCCcceEEEEEEeccccCCCC--cccc
Q psy14062 151 IDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD--QVGGVSRCSVAIHFAQIIDKPN--EEYE 226 (388)
Q Consensus 151 l~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~--~~~~~~~~eV~~~~~~~~~~~~--~~~~ 226 (388)
+++|+ |++ ++.+|++.+.+..+.-........+++.++|++|++. .++..+..++............ ....
T Consensus 48 l~~l~----G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~ 122 (228)
T cd03257 48 ARAIL----GLL-KPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARK 122 (228)
T ss_pred HHHHh----CCC-CCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHH
Confidence 99999 998 7789998887765432111001223356999999973 3444554433211101111100 0000
Q ss_pred ccCCceEEEEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhh
Q psy14062 227 IIPGTDLEIARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKL 300 (388)
Q Consensus 227 ~~~~~~l~~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~ 300 (388)
......+...++. ...+..+..|||||+||+.+|++|.. +|+++|||||+++| +.+...+.++.++..
T Consensus 123 ~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~ 196 (228)
T cd03257 123 EAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALAL------NPKLLIADEPTSALDVSVQAQILDLLKKLQEELG 196 (228)
T ss_pred HHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhc------CCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 0000111222221 23456788999999999999999999 99999999999999 667778888776523
Q ss_pred hHHHHHHHhHHHHHHHHHHHH
Q psy14062 301 TRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 301 ~~ii~vtH~l~~l~~~~d~~~ 321 (388)
.+++++||+++.+...+|++.
T Consensus 197 ~tii~~sH~~~~~~~~~d~i~ 217 (228)
T cd03257 197 LTLLFITHDLGVVAKIADRVA 217 (228)
T ss_pred CEEEEEeCCHHHHHHhcCeEE
Confidence 359999999999998888753
No 80
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=8.9e-30 Score=243.49 Aligned_cols=199 Identities=19% Similarity=0.230 Sum_probs=139.4
Q ss_pred cEEEEEEEeeceEEec-CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSYA-GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~-~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
++.+.+++ ++|+ +..++ +||||+|.+ |++++|+||||||||||++
T Consensus 4 ~l~~~~l~----~~~~~~~~~l--------~~isl~i~~----------------------Ge~~~i~G~nGsGKSTLl~ 49 (274)
T PRK13647 4 IIEVEDLH----FRYKDGTKAL--------KGLSLSIPE----------------------GSKTALLGPNGAGKSTLLL 49 (274)
T ss_pred eEEEEEEE----EEeCCCCeee--------eeEEEEEcC----------------------CCEEEEECCCCCcHHHHHH
Confidence 55666666 6785 34454 499999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccC-CCCCcceEEEEEEeccccCCCCccccccCCc
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD-QVGGVSRCSVAIHFAQIIDKPNEEYEIIPGT 231 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~-~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~ 231 (388)
+|+ |++ ++.+|++.++|..+. ..... .+.+.++|+||++. .++..++.++..+.....+............
T Consensus 50 ~l~----Gl~-~p~~G~i~~~g~~~~--~~~~~-~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 121 (274)
T PRK13647 50 HLN----GIY-LPQRGRVKVMGREVN--AENEK-WVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEE 121 (274)
T ss_pred HHh----cCC-CCCceEEEECCEECC--CCCHH-HHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHH
Confidence 999 998 778999888776442 11112 22356999999863 2333444332221111101110000000011
Q ss_pred eEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHH
Q psy14062 232 DLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLV 306 (388)
Q Consensus 232 ~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~v 306 (388)
.+...++....++.+..|||||+||+.||++|+. +|++||||||+++| ..+...+.++++++. +|+++
T Consensus 122 ~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~-tili~ 194 (274)
T PRK13647 122 ALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAM------DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGK-TVIVA 194 (274)
T ss_pred HHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHc------CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCC-EEEEE
Confidence 2222333334567889999999999999999999 99999999999999 777788888776554 59999
Q ss_pred HHhHHHHHHHHHHHH
Q psy14062 307 ETDLKALEPELRKAV 321 (388)
Q Consensus 307 tH~l~~l~~~~d~~~ 321 (388)
||+++.+.++||++.
T Consensus 195 tH~~~~~~~~~d~i~ 209 (274)
T PRK13647 195 THDVDLAAEWADQVI 209 (274)
T ss_pred eCCHHHHHHhCCEEE
Confidence 999999999998763
No 81
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.95 E-value=5.7e-30 Score=236.72 Aligned_cols=193 Identities=17% Similarity=0.197 Sum_probs=137.3
Q ss_pred EEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 77 ITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 77 i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+++ ++|++ +.++. ||||++.+ |++++|+||||||||||+++|
T Consensus 3 ~~~l~----~~~~~~~~~il~--------~is~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l 48 (220)
T cd03263 3 IRNLT----KTYKKGTKPAVD--------DLSLNVYK----------------------GEIFGLLGHNGAGKTTTLKML 48 (220)
T ss_pred EEeeE----EEeCCCCceeec--------ceEEEEcC----------------------CcEEEEECCCCCCHHHHHHHH
Confidence 44555 67876 55654 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cccCCceE
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EIIPGTDL 233 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~~~~l 233 (388)
+ |++ ++.+|++.+.|..+.. .. ....+.+++++|++..++..+..++...+....+...... ... ...+
T Consensus 49 ~----Gl~-~~~~G~i~~~g~~~~~---~~-~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-~~~l 118 (220)
T cd03263 49 T----GEL-RPTSGTAYINGYSIRT---DR-KAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEV-ELLL 118 (220)
T ss_pred h----CCC-CCCCcEEEECCEeccc---ch-HHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHH-HHHH
Confidence 9 998 7789998887765421 11 1223469999999877666565443221111111111000 000 1122
Q ss_pred EEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 234 ~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH 308 (388)
...++....+..+..||+||+||+.||++|+. +|+++|||||+++| +.+...+.++.+ + .+++++||
T Consensus 119 ~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH 190 (220)
T cd03263 119 RVLGLTDKANKRARTLSGGMKRKLSLAIALIG------GPSVLLLDEPTSGLDPASRRAIWDLILEVRK-G-RSIILTTH 190 (220)
T ss_pred HHcCCHHHHhChhhhCCHHHHHHHHHHHHHhc------CCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-C-CEEEEEcC
Confidence 22233334456788999999999999999999 99999999999999 667777777765 3 36999999
Q ss_pred hHHHHHHHHHHHH
Q psy14062 309 DLKALEPELRKAV 321 (388)
Q Consensus 309 ~l~~l~~~~d~~~ 321 (388)
+++.+.+.+|++.
T Consensus 191 ~~~~~~~~~d~i~ 203 (220)
T cd03263 191 SMDEAEALCDRIA 203 (220)
T ss_pred CHHHHHHhcCEEE
Confidence 9999998888653
No 82
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=9.2e-30 Score=242.97 Aligned_cols=199 Identities=14% Similarity=0.123 Sum_probs=137.2
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|+++.++. ++||+|.+ |++++|+||||||||||+++|
T Consensus 2 l~~~~l~----~~~~~~~il~--------~isl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l 47 (271)
T PRK13638 2 LATSDLW----FRYQDEPVLK--------GLNLDFSL----------------------SPVTGLVGANGCGKSTLFMNL 47 (271)
T ss_pred eEEEEEE----EEcCCccccc--------ceEEEEcC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 4566666 7798766654 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCC-CCcceEEEEEEeccccCCCCcc-ccccCCce
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQV-GGVSRCSVAIHFAQIIDKPNEE-YEIIPGTD 232 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~-~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~~ 232 (388)
+ |++ ++.+|++.++|..+...... ....++.+++++|++... ...+..++........+..... .... ...
T Consensus 48 ~----Gl~-~p~~G~i~~~g~~i~~~~~~-~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 120 (271)
T PRK13638 48 S----GLL-RPQKGAVLWQGKPLDYSKRG-LLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRV-DEA 120 (271)
T ss_pred c----CCC-CCCccEEEECCEEcccccCC-HHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHH-HHH
Confidence 9 998 77899988877654211111 112235699999986521 2222221111111111111100 0000 012
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++..+.+..+..|||||+||+.||++|+. +|+++||||||++| ..+...+.++++++. +|+++|
T Consensus 121 l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~-tii~vt 193 (271)
T PRK13638 121 LTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL------QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGN-HVIISS 193 (271)
T ss_pred HHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCC-EEEEEe
Confidence 222233334567789999999999999999999 99999999999999 667778887765554 599999
Q ss_pred HhHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAV 321 (388)
Q Consensus 308 H~l~~l~~~~d~~~ 321 (388)
|+++.+.+.+|++.
T Consensus 194 H~~~~~~~~~d~i~ 207 (271)
T PRK13638 194 HDIDLIYEISDAVY 207 (271)
T ss_pred CCHHHHHHhCCEEE
Confidence 99999999888763
No 83
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.2e-29 Score=238.02 Aligned_cols=202 Identities=19% Similarity=0.251 Sum_probs=141.6
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|+++.++. |+||+|.+ |++++|+||||||||||+++
T Consensus 3 ~l~~~~l~----~~~~~~~~l~--------~~sl~i~~----------------------Ge~~~l~G~nGsGKSTLl~~ 48 (241)
T PRK10895 3 TLTAKNLA----KAYKGRRVVE--------DVSLTVNS----------------------GEIVGLLGPNGAGKTTTFYM 48 (241)
T ss_pred eEEEeCcE----EEeCCEEEEe--------eeeEEEcC----------------------CcEEEEECCCCCCHHHHHHH
Confidence 34555566 6798766655 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccC-CCCccccccCCce
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIID-KPNEEYEIIPGTD 232 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~-~~~~~~~~~~~~~ 232 (388)
|+ |+. ++.+|++.+.+..+. ...........+++++|++..++..++.++...+..... .............
T Consensus 49 l~----G~~-~~~~G~i~~~g~~~~--~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~ 121 (241)
T PRK10895 49 VV----GIV-PRDAGNIIIDDEDIS--LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANEL 121 (241)
T ss_pred Hh----CCC-CCCCcEEEECCEECC--CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHH
Confidence 99 998 778999888775432 111112223469999999877766665543322211111 0000000000011
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++....+..+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.++++.+. +++++|
T Consensus 122 l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~-tiii~s 194 (241)
T PRK10895 122 MEEFHIEHLRDSMGQSLSGGERRRVEIARALAA------NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGL-GVLITD 194 (241)
T ss_pred HHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCC-EEEEEE
Confidence 222222223456788999999999999999999 99999999999999 666777777765554 599999
Q ss_pred HhHHHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAVNF 323 (388)
Q Consensus 308 H~l~~l~~~~d~~~~y 323 (388)
|+++.+...+|++...
T Consensus 195 H~~~~~~~~~d~v~~l 210 (241)
T PRK10895 195 HNVRETLAVCERAYIV 210 (241)
T ss_pred cCHHHHHHhcCEEEEE
Confidence 9999999998876443
No 84
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=9.9e-30 Score=248.71 Aligned_cols=211 Identities=14% Similarity=0.110 Sum_probs=143.1
Q ss_pred CcEEEEEEEeeceEEecCceee-cC-CCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTL-GP-FNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l-~~-f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
+.+.+.+|+ ++|+..... .+ -...+|+||||+|.+ |++++|+||||||||||
T Consensus 4 ~~l~v~nl~----~~~~~~~~~~~~~~~~~~l~~vsl~i~~----------------------Ge~~~IvG~sGsGKSTL 57 (327)
T PRK11308 4 PLLQAIDLK----KHYPVKRGLFKPERLVKALDGVSFTLER----------------------GKTLAVVGESGCGKSTL 57 (327)
T ss_pred ceEEEeeeE----EEEcCCCCccccCCceeEEeeeEEEECC----------------------CCEEEEECCCCCcHHHH
Confidence 457778888 778532110 00 012356799999999 99999999999999999
Q ss_pred HhhhhhcccEEEcCCCCCcceeehhhhhhcCcc-chhhhhccceeEecccC--CCCCcceEEEEEEecccc-CCCCccc-
Q psy14062 151 IDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSD--QVGGVSRCSVAIHFAQII-DKPNEEY- 225 (388)
Q Consensus 151 l~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~-~~~lr~~~i~~l~q~~~--~~~~~~~~eV~~~~~~~~-~~~~~~~- 225 (388)
+++|+ |++ ++.+|++.+.|..+.-+... ....| +.++++||++. +.+.++..+........+ +......
T Consensus 58 l~~l~----gl~-~p~~G~i~~~g~~l~~~~~~~~~~~r-~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~ 131 (327)
T PRK11308 58 ARLLT----MIE-TPTGGELYYQGQDLLKADPEAQKLLR-QKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERR 131 (327)
T ss_pred HHHHH----cCC-CCCCcEEEECCEEcCcCCHHHHHHHh-CCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHH
Confidence 99999 998 67799998888665422211 11233 46999999973 444444322211000011 1111100
Q ss_pred cccCCceEEEEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 226 EIIPGTDLEIARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 226 ~~~~~~~l~~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
..+ ...+...++. ...++.+..|||||+||+.||++|+. +|++||+||||++| .+++.+|.+++++.
T Consensus 132 ~~~-~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~------~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~ 204 (327)
T PRK11308 132 EKA-LAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALML------DPDVVVADEPVSALDVSVQAQVLNLMMDLQQEL 204 (327)
T ss_pred HHH-HHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHc------CCCEEEEECCCccCCHHHHHHHHHHHHHHHHHc
Confidence 011 1122222221 12367789999999999999999999 99999999999999 77888888887764
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
..+++++|||+..+.+.+|++.-
T Consensus 205 g~til~iTHdl~~~~~~adrv~v 227 (327)
T PRK11308 205 GLSYVFISHDLSVVEHIADEVMV 227 (327)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEE
Confidence 44699999999999999987643
No 85
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.95 E-value=2.1e-29 Score=238.89 Aligned_cols=201 Identities=20% Similarity=0.218 Sum_probs=141.8
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|+++.+|. ||||+|.+ |++++|+||||||||||+++
T Consensus 2 ~l~~~~l~----~~~~~~~il~--------~is~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~ 47 (258)
T PRK13548 2 MLEARNLS----VRLGGRTLLD--------DVSLTLRP----------------------GEVVAILGPNGAGKSTLLRA 47 (258)
T ss_pred eEEEEeEE----EEeCCeeeee--------eeeEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 35566666 7898776655 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceE
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l 233 (388)
|+ |++ ++.+|++.+.|..+.- .... .+.+.+++++|++..++..++.++......................+
T Consensus 48 i~----G~~-~p~~G~i~~~g~~~~~--~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l 119 (258)
T PRK13548 48 LS----GEL-SPDSGEVRLNGRPLAD--WSPA-ELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119 (258)
T ss_pred Hh----CCC-CCCCCEEEECCEEccc--CCHH-HhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHH
Confidence 99 998 7779998887654321 1111 22346999999987766556544322111100100000000001122
Q ss_pred EEEEEeeeCCCCeeeeCCccccHHHHHHHHH------HcCCCCCCCceEEeccchhhH-----HHHHhhhHHHH-HHhhh
Q psy14062 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLR------DHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEER-TEKLT 301 (388)
Q Consensus 234 ~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~------~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~-~e~~~ 301 (388)
...++..+.+..+..|||||+||+.||++|+ . +|++|||||||++| +.+...+.++. +.+.
T Consensus 120 ~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~- 192 (258)
T PRK13548 120 AQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDG------PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGL- 192 (258)
T ss_pred HHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCC------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC-
Confidence 2233333456788999999999999999999 5 79999999999999 66777888876 3444
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q psy14062 302 RVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 302 ~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+|+++||+++.+...||++..+
T Consensus 193 tiii~sH~~~~~~~~~d~i~~l 214 (258)
T PRK13548 193 AVIVVLHDLNLAARYADRIVLL 214 (258)
T ss_pred EEEEEECCHHHHHHhcCEEEEE
Confidence 5999999999999999987544
No 86
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.95 E-value=1.7e-29 Score=239.26 Aligned_cols=192 Identities=16% Similarity=0.167 Sum_probs=141.1
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+.+.+.++. ++|+++.++. +|||+|.+ |++++|+||||||||||++
T Consensus 11 ~~l~i~~l~----~~~~~~~il~--------~isl~i~~----------------------Ge~~~I~G~NGsGKSTLlk 56 (257)
T PRK11247 11 TPLLLNAVS----KRYGERTVLN--------QLDLHIPA----------------------GQFVAVVGRSGCGKSTLLR 56 (257)
T ss_pred CcEEEEEEE----EEECCcceee--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 467777887 7898776655 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCce
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~ 232 (388)
+|+ |++ ++.+|++.+.+..+ ... .+.++|++|++..++..+..++..... ...... .. ...
T Consensus 57 ~l~----Gl~-~p~~G~i~~~g~~~-------~~~-~~~i~~v~q~~~l~~~~tv~enl~~~~--~~~~~~---~~-~~~ 117 (257)
T PRK11247 57 LLA----GLE-TPSAGELLAGTAPL-------AEA-REDTRLMFQDARLLPWKKVIDNVGLGL--KGQWRD---AA-LQA 117 (257)
T ss_pred HHh----cCC-CCCCeEEEECCEEH-------HHh-hCceEEEecCccCCCCCcHHHHHHhcc--cchHHH---HH-HHH
Confidence 999 998 77899976654322 122 246999999987776555544322110 000000 00 011
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++....++.+..|||||+||+.||++|+. +|+++|||||+++| ..+...+.++.++...+++++|
T Consensus 118 l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivs 191 (257)
T PRK11247 118 LAAVGLADRANEWPAALSGGQKQRVALARALIH------RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVT 191 (257)
T ss_pred HHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 222233334467789999999999999999999 99999999999999 6677777777554333599999
Q ss_pred HhHHHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAVNF 323 (388)
Q Consensus 308 H~l~~l~~~~d~~~~y 323 (388)
|+++.+...+|++..+
T Consensus 192 Hd~~~~~~~~d~i~~l 207 (257)
T PRK11247 192 HDVSEAVAMADRVLLI 207 (257)
T ss_pred CCHHHHHHhCCEEEEE
Confidence 9999999999877444
No 87
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=1.2e-29 Score=237.77 Aligned_cols=201 Identities=14% Similarity=0.151 Sum_probs=141.6
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|+++.+++ |+||++.+ |++++|+||||||||||+++|
T Consensus 2 l~~~~l~----~~~~~~~il~--------~~s~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~l 47 (240)
T PRK09493 2 IEFKNVS----KHFGPTQVLH--------NIDLNIDQ----------------------GEVVVIIGPSGSGKSTLLRCI 47 (240)
T ss_pred EEEEeEE----EEECCeEEee--------eeeEEEcC----------------------CcEEEEECCCCCCHHHHHHHH
Confidence 4556666 6788766655 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEec-cccCCCCccccccCCceE
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFA-QIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~-~~~~~~~~~~~~~~~~~l 233 (388)
+ |++ ++.+|++.++|..+...... ...+.+.+++++|++..++..++.++..... ...+.............+
T Consensus 48 ~----G~~-~~~~G~i~~~g~~~~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l 121 (240)
T PRK09493 48 N----KLE-EITSGDLIVDGLKVNDPKVD-ERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELL 121 (240)
T ss_pred h----CCC-CCCceEEEECCEECCcCChh-HHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHH
Confidence 9 998 77899988877644311111 1122356999999987776666544322110 011111000000001122
Q ss_pred EEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 234 ~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH 308 (388)
...++....+..+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.++++++. +++++||
T Consensus 122 ~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~-tiii~sH 194 (240)
T PRK09493 122 AKVGLAERAHHYPSELSGGQQQRVAIARALAV------KPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGM-TMVIVTH 194 (240)
T ss_pred HHcCChHHHhcChhhcCHHHHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCC-EEEEEeC
Confidence 22233333467788999999999999999999 99999999999999 677778887765554 5999999
Q ss_pred hHHHHHHHHHHHHH
Q psy14062 309 DLKALEPELRKAVN 322 (388)
Q Consensus 309 ~l~~l~~~~d~~~~ 322 (388)
+++.+...||++..
T Consensus 195 ~~~~~~~~~d~i~~ 208 (240)
T PRK09493 195 EIGFAEKVASRLIF 208 (240)
T ss_pred CHHHHHHhCCEEEE
Confidence 99999998887643
No 88
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.2e-29 Score=238.02 Aligned_cols=198 Identities=16% Similarity=0.245 Sum_probs=140.2
Q ss_pred EEEEEeeceEEecC-ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 77 ITKIVAFNFKSYAG-YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 77 i~~l~~~~fksy~~-~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+.+++ ++|++ +.++. ++||+|.+ |++++|+||||||||||+++|+
T Consensus 3 ~~~l~----~~~~~~~~~l~--------~is~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l~ 48 (242)
T cd03295 3 FENVT----KRYGGGKKAVN--------NLNLEIAK----------------------GEFLVLIGPSGSGKTTTMKMIN 48 (242)
T ss_pred EEEEE----EEeCCcceEee--------eeEEEECC----------------------CCEEEEECCCCCCHHHHHHHHh
Confidence 45555 67876 55654 99999999 9999999999999999999999
Q ss_pred hcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCCceEE
Q psy14062 156 FRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGTDLE 234 (388)
Q Consensus 156 ~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~~l~ 234 (388)
|++ ++.+|++.+.+..+... ..... ...++|++|++..++..+..++...+....+..... ...+. ..+.
T Consensus 49 ----G~~-~~~~G~i~~~g~~~~~~--~~~~~-~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-~~l~ 119 (242)
T cd03295 49 ----RLI-EPTSGEIFIDGEDIREQ--DPVEL-RRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERAD-ELLA 119 (242)
T ss_pred ----cCC-CCCCceEEECCeEcCcC--ChHHh-hcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHH-HHHH
Confidence 998 77899988877543211 11122 346999999988777666654432221111111000 00000 1122
Q ss_pred EEEEee--eCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 235 IARTAF--YDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 235 ~~r~~~--~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
..++.. +.++.+..|||||+||+.||++|.. +|+++|||||+++| +.+...+.+++++...+++++|
T Consensus 120 ~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~------~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~s 193 (242)
T cd03295 120 LVGLDPAEFADRYPHELSGGQQQRVGVARALAA------DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVT 193 (242)
T ss_pred HcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhc------CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 223322 3467788999999999999999999 99999999999999 6677778777665233599999
Q ss_pred HhHHHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAVNF 323 (388)
Q Consensus 308 H~l~~l~~~~d~~~~y 323 (388)
|+++.+...+|++...
T Consensus 194 H~~~~~~~~~d~i~~l 209 (242)
T cd03295 194 HDIDEAFRLADRIAIM 209 (242)
T ss_pred cCHHHHHHhCCEEEEE
Confidence 9999999998876443
No 89
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=7.9e-30 Score=234.40 Aligned_cols=191 Identities=17% Similarity=0.219 Sum_probs=136.2
Q ss_pred EEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 77 i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.+++ ++|++..+++ |+||+|.+ | +++|+||||||||||+++|+
T Consensus 3 ~~~~~----~~~~~~~~l~--------~vs~~i~~----------------------g-~~~i~G~nGsGKSTLl~~l~- 46 (211)
T cd03264 3 LENLT----KRYGKKRALD--------GVSLTLGP----------------------G-MYGLLGPNGAGKTTLMRILA- 46 (211)
T ss_pred EEEEE----EEECCEEEEc--------ceeEEEcC----------------------C-cEEEECCCCCCHHHHHHHHh-
Confidence 44555 6687766655 99999999 9 99999999999999999999
Q ss_pred cccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCCceEEE
Q psy14062 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGTDLEI 235 (388)
Q Consensus 157 ~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~~l~~ 235 (388)
|++ ++.+|++.+.|..+... . ... ++.+++++|++..++..++.++........+..... ..... ..+..
T Consensus 47 ---Gl~-~~~~G~i~~~g~~~~~~--~-~~~-~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-~~l~~ 117 (211)
T cd03264 47 ---TLT-PPSSGTIRIDGQDVLKQ--P-QKL-RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVD-EVLEL 117 (211)
T ss_pred ---CCC-CCCccEEEECCCccccc--h-HHH-HhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHH-HHHHH
Confidence 998 77899988877544211 1 222 356999999988777666554322111111111000 00001 11222
Q ss_pred EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhH
Q psy14062 236 ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDL 310 (388)
Q Consensus 236 ~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l 310 (388)
.++....+..+..|||||+||+.+|++|+. +|+++|||||+++| +.+...+.++++. .+++++||++
T Consensus 118 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~vsH~~ 189 (211)
T cd03264 118 VNLGDRAKKKIGSLSGGMRRRVGIAQALVG------DPSILIVDEPTAGLDPEERIRFRNLLSELGED--RIVILSTHIV 189 (211)
T ss_pred CCCHHHHhCchhhCCHHHHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHhCC--CEEEEEcCCH
Confidence 232233456788999999999999999999 99999999999999 6677777777653 4699999999
Q ss_pred HHHHHHHHHH
Q psy14062 311 KALEPELRKA 320 (388)
Q Consensus 311 ~~l~~~~d~~ 320 (388)
+.+.+.+|++
T Consensus 190 ~~~~~~~d~i 199 (211)
T cd03264 190 EDVESLCNQV 199 (211)
T ss_pred HHHHHhCCEE
Confidence 9998888765
No 90
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.95 E-value=1.4e-29 Score=233.10 Aligned_cols=185 Identities=23% Similarity=0.287 Sum_probs=131.5
Q ss_pred EEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC
Q psy14062 86 KSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN 165 (388)
Q Consensus 86 ksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn 165 (388)
++|++..+++ +|||+|.+ |++++|+||||||||||+++|+ |++ ++
T Consensus 7 ~~~~~~~~l~--------~isl~i~~----------------------Ge~~~l~G~nGsGKSTLl~~l~----G~~-~p 51 (213)
T cd03235 7 VSYGGHPVLE--------DVSFEVKP----------------------GEFLAIVGPNGAGKSTLLKAIL----GLL-KP 51 (213)
T ss_pred eEECCEEeee--------cceeEEcC----------------------CCEEEEECCCCCCHHHHHHHHc----CCC-CC
Confidence 6787766654 99999999 9999999999999999999999 998 77
Q ss_pred CCCcceeehhhhhhcCccchhhhhccceeEecccCCC--CCcceEEEEEEecccc----CCCCcc-ccccCCceEEEEEE
Q psy14062 166 GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQV--GGVSRCSVAIHFAQII----DKPNEE-YEIIPGTDLEIART 238 (388)
Q Consensus 166 gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~--~~~~~~eV~~~~~~~~----~~~~~~-~~~~~~~~l~~~r~ 238 (388)
.+|++.+.|..+. .. ++.+++++|++... +..+..++........ ...... .... ...+...++
T Consensus 52 ~~G~i~~~g~~~~-------~~-~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~l 122 (213)
T cd03235 52 TSGSIRVFGKPLE-------KE-RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKV-DEALERVGL 122 (213)
T ss_pred CCCEEEECCccHH-------HH-HhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHH-HHHHHHcCC
Confidence 8999887765432 22 34699999987652 2234433221110000 000000 0000 012222233
Q ss_pred eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHH
Q psy14062 239 AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKAL 313 (388)
Q Consensus 239 ~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l 313 (388)
....++++..|||||+||+.||++|+. +|+++||||||++| ..+.+.+.++.+++. +++++||+++.+
T Consensus 123 ~~~~~~~~~~LSgG~~qrv~la~al~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-tvi~~sH~~~~~ 195 (213)
T cd03235 123 SELADRQIGELSGGQQQRVLLARALVQ------DPDLLLLDEPFAGVDPKTQEDIYELLRELRREGM-TILVVTHDLGLV 195 (213)
T ss_pred HHHHhCCcccCCHHHHHHHHHHHHHHc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCC-EEEEEeCCHHHH
Confidence 233466788999999999999999999 99999999999999 667778877765544 599999999999
Q ss_pred HHHHHHHH
Q psy14062 314 EPELRKAV 321 (388)
Q Consensus 314 ~~~~d~~~ 321 (388)
.+.+|++.
T Consensus 196 ~~~~d~i~ 203 (213)
T cd03235 196 LEYFDRVL 203 (213)
T ss_pred HHhcCEEE
Confidence 99888753
No 91
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=4.5e-30 Score=244.89 Aligned_cols=195 Identities=16% Similarity=0.174 Sum_probs=139.1
Q ss_pred EEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC
Q psy14062 86 KSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN 165 (388)
Q Consensus 86 ksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn 165 (388)
++|++..++. |+||+|.+ |++++|+||||||||||+++|+ |++ ++
T Consensus 32 ~~~~~~~il~--------~is~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~L~----Gl~-~p 76 (269)
T cd03294 32 KKTGQTVGVN--------DVSLDVRE----------------------GEIFVIMGLSGSGKSTLLRCIN----RLI-EP 76 (269)
T ss_pred hhcCCceEee--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh----cCC-CC
Confidence 7788877765 99999999 9999999999999999999999 998 77
Q ss_pred CCCcceeehhhhhhcCcc-chhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCCceEEEEEEeeeCC
Q psy14062 166 GSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGTDLEIARTAFYDN 243 (388)
Q Consensus 166 gSGKs~i~da~i~vlg~~-~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~~l~~~r~~~~~~ 243 (388)
.+|++.+.|..+.-.... ....+.+.+++++|.+..++..++.++........+..... ...+. ..+...++....+
T Consensus 77 ~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-~~l~~~~l~~~~~ 155 (269)
T cd03294 77 TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAA-EALELVGLEGWEH 155 (269)
T ss_pred CCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHcCCHhHhh
Confidence 899988877544211110 11123456999999987776666544322111111110000 00000 1222223333446
Q ss_pred CCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHH
Q psy14062 244 SSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELR 318 (388)
Q Consensus 244 ~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d 318 (388)
+.+..|||||+||+.||++|+. +|++|||||||++| +.+...+.++.++...+++++||+++.+.+.+|
T Consensus 156 ~~~~~LS~Gq~qrv~lAral~~------~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d 229 (269)
T cd03294 156 KYPDELSGGMQQRVGLARALAV------DPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGD 229 (269)
T ss_pred CCcccCCHHHHHHHHHHHHHhc------CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 7788999999999999999999 99999999999999 777778888765533359999999999999988
Q ss_pred HHHH
Q psy14062 319 KAVN 322 (388)
Q Consensus 319 ~~~~ 322 (388)
++..
T Consensus 230 ~v~~ 233 (269)
T cd03294 230 RIAI 233 (269)
T ss_pred EEEE
Confidence 7643
No 92
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.8e-29 Score=244.71 Aligned_cols=207 Identities=20% Similarity=0.235 Sum_probs=138.4
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|++.. ++...+|+||||+|.+ |++++|+||||||||||+++|
T Consensus 3 i~~~~l~----~~y~~~~---~~~~~~l~~vsl~i~~----------------------Ge~v~iiG~nGsGKSTLl~~L 53 (305)
T PRK13651 3 IKVKNIV----KIFNKKL---PTELKALDNVSVEINQ----------------------GEFIAIIGQTGSGKTTFIEHL 53 (305)
T ss_pred EEEEEEE----EEECCCC---CccccceeeeEEEEeC----------------------CCEEEEECCCCCcHHHHHHHH
Confidence 3455555 6786532 1111245699999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhc----------------Cc-----cchhhhhccceeEecccC-CCCCcceEEEEE
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVF----------------GY-----RASKIRANKLSVLMHKSD-QVGGVSRCSVAI 212 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vl----------------g~-----~~~~lr~~~i~~l~q~~~-~~~~~~~~eV~~ 212 (388)
+ |++ ++.+|++.+.+...... +. .....+++.++|+||++. .+...++.+...
T Consensus 54 ~----Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~ 128 (305)
T PRK13651 54 N----ALL-LPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDII 128 (305)
T ss_pred h----CCC-CCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHH
Confidence 9 999 77899998876432100 00 011123456999999863 222334333222
Q ss_pred EeccccCCCCccccccCCceEEEEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----H
Q psy14062 213 HFAQIIDKPNEEYEIIPGTDLEIARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----E 286 (388)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~l~~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e 286 (388)
+.....+.............+...++. ...+++++.|||||+||+.||++|+. +|++|||||||++| .
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~------~P~lLlLDEPt~~LD~~~~~ 202 (305)
T PRK13651 129 FGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAM------EPDFLVFDEPTAGLDPQGVK 202 (305)
T ss_pred hhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHH
Confidence 111111111111000001122333332 34567899999999999999999999 99999999999999 6
Q ss_pred HHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 287 VLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 287 ~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
.+.+.+.++++++. +|+++||+++.+.+.||++.-
T Consensus 203 ~l~~~l~~l~~~g~-tiiivtHd~~~~~~~adrv~v 237 (305)
T PRK13651 203 EILEIFDNLNKQGK-TIILVTHDLDNVLEWTKRTIF 237 (305)
T ss_pred HHHHHHHHHHHCCC-EEEEEeeCHHHHHHhCCEEEE
Confidence 77788888876554 599999999999999987633
No 93
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1e-29 Score=248.58 Aligned_cols=207 Identities=14% Similarity=0.099 Sum_probs=140.6
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.+++ ++|++... ...+|+||||+|.+ |++++|+||||||||||+++
T Consensus 3 ~L~v~~l~----~~~~~~~~----~~~~l~~vsl~i~~----------------------Ge~~~lvG~sGsGKSTL~~~ 52 (326)
T PRK11022 3 LLNVDKLS----VHFGDESA----PFRAVDRISYSVKQ----------------------GEVVGIVGESGSGKSVSSLA 52 (326)
T ss_pred eEEEeCeE----EEECCCCc----cEEEEeeeEEEECC----------------------CCEEEEECCCCChHHHHHHH
Confidence 35566666 77865210 01135599999999 99999999999999999999
Q ss_pred hhhcccEEEcC---CCCCcceeehhhhhhcCcc-chhhhhccceeEecccC--CCCCcceEEEEEEecccc-CCCCcc-c
Q psy14062 154 MLFRFNAIIGP---NGSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSD--QVGGVSRCSVAIHFAQII-DKPNEE-Y 225 (388)
Q Consensus 154 i~~~~ngIiGp---ngSGKs~i~da~i~vlg~~-~~~lr~~~i~~l~q~~~--~~~~~~~~eV~~~~~~~~-~~~~~~-~ 225 (388)
|+ |++.| +.+|++.+.|..+.-+... ....|++.++++||++. +.|.++..+........+ +..... .
T Consensus 53 l~----Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~ 128 (326)
T PRK11022 53 IM----GLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRR 128 (326)
T ss_pred HH----cCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHH
Confidence 99 98843 3689988888765422221 12345567999999973 444444321110000111 111000 0
Q ss_pred cccCCceEEEEEEe---eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHH
Q psy14062 226 EIIPGTDLEIARTA---FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERT 297 (388)
Q Consensus 226 ~~~~~~~l~~~r~~---~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~ 297 (388)
..+. ..+...++. ...+..+..|||||+||+.||++|+. +|++||+||||++| .++..++.++++
T Consensus 129 ~~~~-~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~------~P~llilDEPts~LD~~~~~~il~lL~~l~~ 201 (326)
T PRK11022 129 QRAI-DLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIAC------RPKLLIADEPTTALDVTIQAQIIELLLELQQ 201 (326)
T ss_pred HHHH-HHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 0000 112222221 12356789999999999999999999 99999999999999 778888988877
Q ss_pred HhhhHHHHHHHhHHHHHHHHHHHH
Q psy14062 298 EKLTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 298 e~~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
+...+++++|||+..+.+++|++.
T Consensus 202 ~~g~til~iTHdl~~~~~~adri~ 225 (326)
T PRK11022 202 KENMALVLITHDLALVAEAAHKII 225 (326)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEE
Confidence 544469999999999999999863
No 94
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.9e-29 Score=242.25 Aligned_cols=201 Identities=18% Similarity=0.186 Sum_probs=141.0
Q ss_pred cEEEEEEEeeceEEec-CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSYA-GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~-~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
++.+.+++ ++|+ ++.++ ++|||+|.+ |++++|+||||||||||++
T Consensus 5 ~l~~~~l~----~~~~~~~~~l--------~~vs~~i~~----------------------Ge~~~i~G~nGaGKSTLl~ 50 (283)
T PRK13636 5 ILKVEELN----YNYSDGTHAL--------KGININIKK----------------------GEVTAILGGNGAGKSTLFQ 50 (283)
T ss_pred eEEEEeEE----EEeCCCCeee--------eeeEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 56677777 7786 45554 499999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCC-CCCcceEEEEEEeccccCCCCccc-cccCC
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQ-VGGVSRCSVAIHFAQIIDKPNEEY-EIIPG 230 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~-~~~~~~~eV~~~~~~~~~~~~~~~-~~~~~ 230 (388)
+|+ |++ ++.+|++.++|..+......... +++.++|+||++.. ....++.++........+...... ..+ .
T Consensus 51 ~i~----Gl~-~p~~G~i~i~g~~~~~~~~~~~~-~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-~ 123 (283)
T PRK13636 51 NLN----GIL-KPSSGRILFDGKPIDYSRKGLMK-LRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRV-D 123 (283)
T ss_pred HHh----cCC-CCCccEEEECCEECCCCcchHHH-HHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHH-H
Confidence 999 998 78899998887655311111122 23569999998632 223344332211111111111110 111 1
Q ss_pred ceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 231 TDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 231 ~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
..+...++..+.++.+..|||||+||+.||++|+. +|+++|||||+++| ..+.+.+.++.++...+|++
T Consensus 124 ~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~------~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~till 197 (283)
T PRK13636 124 NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM------EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIII 197 (283)
T ss_pred HHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHc------CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 12222333344578899999999999999999999 99999999999999 66777888877652335999
Q ss_pred HHHhHHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKAV 321 (388)
Q Consensus 306 vtH~l~~l~~~~d~~~ 321 (388)
+||+++.+...||++.
T Consensus 198 vsH~~~~~~~~~dri~ 213 (283)
T PRK13636 198 ATHDIDIVPLYCDNVF 213 (283)
T ss_pred EecCHHHHHHhCCEEE
Confidence 9999999999998763
No 95
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.9e-29 Score=230.64 Aligned_cols=191 Identities=18% Similarity=0.193 Sum_probs=136.2
Q ss_pred EEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 77 i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.+++ ++|++... |+||+|.+ |++++|+||||||||||+++|+
T Consensus 3 ~~~l~----~~~~~~~~----------~is~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~l~- 45 (211)
T cd03298 3 LDKIR----FSYGEQPM----------HFDLTFAQ----------------------GEITAIVGPSGSGKSTLLNLIA- 45 (211)
T ss_pred EEeEE----EEeCCEec----------ceEEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh-
Confidence 44555 66876432 89999999 9999999999999999999999
Q ss_pred cccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccc-cCCCCccccccCCceEEE
Q psy14062 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQI-IDKPNEEYEIIPGTDLEI 235 (388)
Q Consensus 157 ~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~-~~~~~~~~~~~~~~~l~~ 235 (388)
|++ ++.+|++.+.+..+... .. ..+.+++++|++..++..+..++....... ..........+. ..+..
T Consensus 46 ---gl~-~~~~G~i~~~g~~~~~~----~~-~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~-~~l~~ 115 (211)
T cd03298 46 ---GFE-TPQSGRVLINGVDVTAA----PP-ADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIE-VALAR 115 (211)
T ss_pred ---CCC-CCCCceEEECCEEcCcC----CH-hHccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHH-HHHHH
Confidence 998 77899988876544211 11 225699999998887766665433211110 000000000111 12222
Q ss_pred EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhH
Q psy14062 236 ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDL 310 (388)
Q Consensus 236 ~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l 310 (388)
.++....+..+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.++.++...+++++||++
T Consensus 116 ~~l~~~~~~~~~~LS~G~~qrv~ia~al~~------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 189 (211)
T cd03298 116 VGLAGLEKRLPGELSGGERQRVALARVLVR------DKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP 189 (211)
T ss_pred cCCHHHHhCCcccCCHHHHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 233334467788999999999999999999 99999999999999 6677788777655333599999999
Q ss_pred HHHHHHHHHH
Q psy14062 311 KALEPELRKA 320 (388)
Q Consensus 311 ~~l~~~~d~~ 320 (388)
+.+...+|++
T Consensus 190 ~~~~~~~d~i 199 (211)
T cd03298 190 EDAKRLAQRV 199 (211)
T ss_pred HHHHhhhCEE
Confidence 9999988865
No 96
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.94 E-value=3.7e-29 Score=251.44 Aligned_cols=201 Identities=18% Similarity=0.207 Sum_probs=156.3
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+.+.+.+++ |+|++.++|+ +|||++.+ |+++||+|.||||||||+|
T Consensus 7 ~ll~~~~i~----K~FggV~AL~--------~v~l~v~~----------------------GEV~aL~GeNGAGKSTLmK 52 (500)
T COG1129 7 PLLELRGIS----KSFGGVKALD--------GVSLTVRP----------------------GEVHALLGENGAGKSTLMK 52 (500)
T ss_pred ceeeeecce----EEcCCceeec--------cceeEEeC----------------------ceEEEEecCCCCCHHHHHH
Confidence 467788999 9999988866 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccC---CCC-cccccc
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIID---KPN-EEYEII 228 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~---~~~-~~~~~~ 228 (388)
+|+ |++ ++++|++.++|..+... .+...+...|..|+|+.++.|.++++++.+.-..... .-+ ......
T Consensus 53 iLs----Gv~-~p~~G~I~~~G~~~~~~--sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~ 125 (500)
T COG1129 53 ILS----GVY-PPDSGEILIDGKPVAFS--SPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR 125 (500)
T ss_pred HHh----Ccc-cCCCceEEECCEEccCC--CHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHH
Confidence 999 999 78899988887765432 2334456679999999999999999987653211000 000 000000
Q ss_pred CCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHH
Q psy14062 229 PGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRV 303 (388)
Q Consensus 229 ~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~i 303 (388)
....+.........+..+..||.+|+|.++||+||.. ++++|||||||++| +.+...++++++++.. +
T Consensus 126 A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~------~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~-i 198 (500)
T COG1129 126 ARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSF------DARVLILDEPTAALTVKETERLFDLIRRLKAQGVA-I 198 (500)
T ss_pred HHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCE-E
Confidence 0011111111111466788999999999999999999 99999999999999 7788899999999886 9
Q ss_pred HHHHHhHHHHHHHHHHHH
Q psy14062 304 QLVETDLKALEPELRKAV 321 (388)
Q Consensus 304 i~vtH~l~~l~~~~d~~~ 321 (388)
+++||.|+++.+.||++.
T Consensus 199 i~ISHrl~Ei~~i~Drit 216 (500)
T COG1129 199 IYISHRLDEVFEIADRIT 216 (500)
T ss_pred EEEcCcHHHHHHhcCEEE
Confidence 999999999999999863
No 97
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.94 E-value=2.4e-29 Score=237.01 Aligned_cols=203 Identities=17% Similarity=0.186 Sum_probs=142.1
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|+++.++. ||||+|.+ |++++|+||||||||||+++
T Consensus 3 ~l~~~~l~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~ 48 (250)
T PRK11264 3 AIEVKNLV----KKFHGQTVLH--------GIDLEVKP----------------------GEVVAIIGPSGSGKTTLLRC 48 (250)
T ss_pred cEEEeceE----EEECCeeeec--------cceEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 45566666 7798766654 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCc-c----chhhhhccceeEecccCCCCCcceEEEEEEecc-ccCCCCcc-cc
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGY-R----ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ-IIDKPNEE-YE 226 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~-~----~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~-~~~~~~~~-~~ 226 (388)
|+ |++ ++.+|++.+.+..+..... . .....+..+++++|++..++..+..++...... ........ ..
T Consensus 49 l~----G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 123 (250)
T PRK11264 49 IN----LLE-QPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA 123 (250)
T ss_pred Hh----cCC-CCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH
Confidence 99 998 7789998887765421110 0 011223469999999877766665443221100 00111000 00
Q ss_pred ccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhh
Q psy14062 227 IIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLT 301 (388)
Q Consensus 227 ~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~ 301 (388)
... ..+...++....+..+..|||||+||+.||++|+. +|++|||||||++| +.+...+.++.+++.
T Consensus 124 ~~~-~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~- 195 (250)
T PRK11264 124 RAR-ELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM------RPEVILFDEPTSALDPELVGEVLNTIRQLAQEKR- 195 (250)
T ss_pred HHH-HHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhc------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCC-
Confidence 000 11222222233466789999999999999999999 99999999999999 667777777766554
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q psy14062 302 RVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 302 ~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+++++||+++.+.+.+|++...
T Consensus 196 tvi~~tH~~~~~~~~~d~i~~l 217 (250)
T PRK11264 196 TMVIVTHEMSFARDVADRAIFM 217 (250)
T ss_pred EEEEEeCCHHHHHHhcCEEEEE
Confidence 5999999999999999876444
No 98
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.7e-29 Score=237.40 Aligned_cols=202 Identities=17% Similarity=0.212 Sum_probs=144.4
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|++..++. ++||+|.+ |++++|+||||||||||+++
T Consensus 5 ~l~~~~l~----~~~~~~~~l~--------~is~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~ 50 (255)
T PRK11300 5 LLSVSGLM----MRFGGLLAVN--------NVNLEVRE----------------------QEIVSLIGPNGAGKTTVFNC 50 (255)
T ss_pred eEEEeeEE----EEECCEEEEE--------eeeeEEcC----------------------CeEEEEECCCCCCHHHHHHH
Confidence 56677777 7798776655 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEec----------cccCC---
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFA----------QIIDK--- 220 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~----------~~~~~--- 220 (388)
|+ |++ ++.+|++.++|..+. .......+...++++||++..++..++.++..... ..++.
T Consensus 51 l~----Gl~-~~~~G~i~~~g~~~~--~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~ 123 (255)
T PRK11300 51 LT----GFY-KPTGGTILLRGQHIE--GLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAF 123 (255)
T ss_pred Hh----CCc-CCCcceEEECCEECC--CCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhcccccc
Confidence 99 998 888999888775442 11112223345889999988877766654322110 00000
Q ss_pred CCc--c-ccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhh
Q psy14062 221 PNE--E-YEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKY 292 (388)
Q Consensus 221 ~~~--~-~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l 292 (388)
... . .... ...+...++....+.++..|||||+||+.||++|+. +|++||||||+++| ..+...+
T Consensus 124 ~~~~~~~~~~~-~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~------~p~llllDEPt~~LD~~~~~~l~~~L 196 (255)
T PRK11300 124 RRAESEALDRA-ATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVT------QPEILMLDEPAAGLNPKETKELDELI 196 (255)
T ss_pred ccchhHHHHHH-HHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEcCCccCCCHHHHHHHHHHH
Confidence 000 0 0000 011222233334567889999999999999999999 99999999999999 6677788
Q ss_pred HHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 293 DEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 293 ~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
.+++++...+++++||+++.+...||++...
T Consensus 197 ~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 227 (255)
T PRK11300 197 AELRNEHNVTVLLIEHDMKLVMGISDRIYVV 227 (255)
T ss_pred HHHHhhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 8877652335999999999999999876443
No 99
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.94 E-value=6e-29 Score=251.48 Aligned_cols=211 Identities=16% Similarity=0.193 Sum_probs=152.1
Q ss_pred CCCcEEEEEEEeeceEEecCceeec-C--CCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCCh
Q psy14062 71 TGPRLIITKIVAFNFKSYAGYVTLG-P--FNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGK 147 (388)
Q Consensus 71 ~~~~l~i~~l~~~~fksy~~~~~l~-~--f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGK 147 (388)
..|.+.+.+|. |+|.....+. . -...|++||||++.+ |++++|||+|||||
T Consensus 277 ~~~ll~V~~l~----k~y~~~~~~~~~~~~~~~Av~~VSf~l~~----------------------GE~lglVGeSGsGK 330 (539)
T COG1123 277 AEPLLSVRNLS----KRYGSRKGLFVRERGEVKAVDDVSFDLRE----------------------GETLGLVGESGSGK 330 (539)
T ss_pred cCceeEeeeee----eeeccccccccccccceeeeeeeeeEecC----------------------CCEEEEECCCCCCH
Confidence 45678888998 8887532110 0 013578999999999 99999999999999
Q ss_pred hhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCc-cchhhhhccceeEecccC--CCCCcceEEEEEEeccccCCC--C
Q psy14062 148 SNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSD--QVGGVSRCSVAIHFAQIIDKP--N 222 (388)
Q Consensus 148 STLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~-~~~~lr~~~i~~l~q~~~--~~~~~~~~eV~~~~~~~~~~~--~ 222 (388)
|||.|+|+ |++ ++.+|.+.++|.. ..+.. ....+| +++.++||+|. +.|..++.+.......++... .
T Consensus 331 STlar~i~----gL~-~P~~G~i~~~g~~-~~~~~~~~~~~r-~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~ 403 (539)
T COG1123 331 STLARILA----GLL-PPSSGSIIFDGQD-LDLTGGELRRLR-RRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGA 403 (539)
T ss_pred HHHHHHHh----CCC-CCCCceEEEeCcc-cccccchhhhhh-hheEEEEeCcccccCccccHHHHHHhHHhhhcccchH
Confidence 99999999 999 7789999998877 22221 122233 45889999865 345555433221111111111 1
Q ss_pred ccccccCCceEEEEEEee-eCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHH
Q psy14062 223 EEYEIIPGTDLEIARTAF-YDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEER 296 (388)
Q Consensus 223 ~~~~~~~~~~l~~~r~~~-~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~ 296 (388)
.....+. ..+...++.. ..+++++.|||||+||++||+||+. +|++||+|||+++| ..+.+++++++
T Consensus 404 ~~~~rv~-~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~------~P~lli~DEp~SaLDvsvqa~VlnLl~~lq 476 (539)
T COG1123 404 ERRARVA-ELLELVGLPPEFLDRYPHELSGGQRQRVAIARALAL------EPKLLILDEPVSALDVSVQAQVLNLLKDLQ 476 (539)
T ss_pred HHHHHHH-HHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhc------CCCEEEecCCccccCHHHHHHHHHHHHHHH
Confidence 1011111 1222223322 4578899999999999999999999 99999999999999 88999999999
Q ss_pred HHhhhHHHHHHHhHHHHHHHHHHHH
Q psy14062 297 TEKLTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 297 ~e~~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
++...++++|||||..++..||++.
T Consensus 477 ~e~g~t~lfISHDl~vV~~i~drv~ 501 (539)
T COG1123 477 EELGLTYLFISHDLAVVRYIADRVA 501 (539)
T ss_pred HHhCCEEEEEeCCHHHHHhhCceEE
Confidence 9876679999999999999999863
No 100
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.94 E-value=4.1e-29 Score=258.04 Aligned_cols=202 Identities=16% Similarity=0.222 Sum_probs=147.0
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|+++.+++ ||||+|.+ |++++|+||||||||||++
T Consensus 3 ~~i~~~~l~----~~~~~~~~l~--------~is~~i~~----------------------Ge~~~l~G~NGsGKSTLl~ 48 (501)
T PRK10762 3 ALLQLKGID----KAFPGVKALS--------GAALNVYP----------------------GRVMALVGENGAGKSTMMK 48 (501)
T ss_pred ceEEEeeeE----EEeCCeEEee--------eeeEEEcC----------------------CeEEEEECCCCCCHHHHHH
Confidence 356777777 8898777655 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEecccc---CC-CCcc-ccc
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQII---DK-PNEE-YEI 227 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~---~~-~~~~-~~~ 227 (388)
+|+ |++ ++.+|++.+.|..+... .....+++.++++||++..++..++.++..+..... .. .... ...
T Consensus 49 ~l~----G~~-~p~~G~i~~~g~~~~~~--~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 121 (501)
T PRK10762 49 VLT----GIY-TRDAGSILYLGKEVTFN--GPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAE 121 (501)
T ss_pred HHh----CCC-CCCCcEEEECCEECCCC--CHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHH
Confidence 999 999 77899988877544211 111223456999999988777777665433211110 00 0000 001
Q ss_pred cCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhH
Q psy14062 228 IPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTR 302 (388)
Q Consensus 228 ~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ 302 (388)
+. ..+...++....++++..|||||+||+.||++|+. +|++|||||||++| ..+...+.++++++. +
T Consensus 122 ~~-~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~-t 193 (501)
T PRK10762 122 AD-KLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSF------ESKVIIMDEPTDALTDTETESLFRVIRELKSQGR-G 193 (501)
T ss_pred HH-HHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCC-E
Confidence 11 12222233334467788999999999999999999 99999999999999 677778888766544 5
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q psy14062 303 VQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 303 ii~vtH~l~~l~~~~d~~~~y 323 (388)
++++||+++.+...||++...
T Consensus 194 vii~sHd~~~~~~~~d~i~~l 214 (501)
T PRK10762 194 IVYISHRLKEIFEICDDVTVF 214 (501)
T ss_pred EEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999977544
No 101
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.94 E-value=1.8e-29 Score=236.05 Aligned_cols=199 Identities=18% Similarity=0.174 Sum_probs=138.3
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|+++.++. +|||+|.+ |++++|+||||||||||+++|
T Consensus 2 l~~~~l~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l 47 (236)
T TIGR03864 2 LEVAGLS----FAYGARRALD--------DVSFTVRP----------------------GEFVALLGPNGAGKSTLFSLL 47 (236)
T ss_pred EEEEeeE----EEECCEEEEe--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 4455565 6788766655 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEE
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLE 234 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~ 234 (388)
+ |+. ++.+|++.++|..+.-. ....+ +.+++++|++..++..+..++...+....+.............+.
T Consensus 48 ~----G~~-~p~~G~i~~~g~~i~~~---~~~~~-~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 118 (236)
T TIGR03864 48 T----RLY-VAQEGQISVAGHDLRRA---PRAAL-ARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLA 118 (236)
T ss_pred h----CCc-CCCceEEEECCEEcccC---Chhhh-hhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9 998 77899988877543211 11222 369999999776665555443221111111100000000001122
Q ss_pred EEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHh
Q psy14062 235 IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETD 309 (388)
Q Consensus 235 ~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~ 309 (388)
..++....+..+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.++.++...+++++||+
T Consensus 119 ~~gl~~~~~~~~~~LS~G~~qrl~laral~~------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 192 (236)
T TIGR03864 119 RLGLAERADDKVRELNGGHRRRVEIARALLH------RPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHL 192 (236)
T ss_pred HcCChhhhcCChhhCCHHHHHHHHHHHHHhc------CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 2233333467788999999999999999999 99999999999999 677778887765423359999999
Q ss_pred HHHHHHHHHHHHHH
Q psy14062 310 LKALEPELRKAVNF 323 (388)
Q Consensus 310 l~~l~~~~d~~~~y 323 (388)
++.+.. +|++...
T Consensus 193 ~~~~~~-~d~i~~l 205 (236)
T TIGR03864 193 VDEIEA-DDRLVVL 205 (236)
T ss_pred hhhHhh-CCEEEEE
Confidence 999975 8876444
No 102
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.8e-29 Score=243.27 Aligned_cols=208 Identities=17% Similarity=0.198 Sum_probs=138.9
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|++... +...+|+||||+|.+ |++++|+||||||||||+++|
T Consensus 3 l~~~~l~----~~y~~~~~---~~~~~L~~vsl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l 53 (290)
T PRK13634 3 ITFQKVE----HRYQYKTP---FERRALYDVNVSIPS----------------------GSYVAIIGHTGSGKSTLLQHL 53 (290)
T ss_pred EEEEEEE----EEECCCCc---ccccceeeEEEEEcC----------------------CCEEEEECCCCCcHHHHHHHH
Confidence 4455666 67864210 011235699999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcC-ccchhhhhccceeEecccC-CCCCcceEEEEEEeccccCCCCccccccCCce
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFG-YRASKIRANKLSVLMHKSD-QVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg-~~~~~lr~~~i~~l~q~~~-~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~ 232 (388)
+ |++ ++.+|++.++|..+.... ......+++.++|+||++. .+...++.++..+.....+.............
T Consensus 54 ~----Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~ 128 (290)
T PRK13634 54 N----GLL-QPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREM 128 (290)
T ss_pred h----cCC-CCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9 998 778999888776542110 1111123356999999863 22233443322111011111111100000112
Q ss_pred EEEEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHH
Q psy14062 233 LEIARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLV 306 (388)
Q Consensus 233 l~~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~v 306 (388)
+...++. ...++++..|||||+||+.||++|+. +|+++||||||++| ..+...+.++.++...+|+++
T Consensus 129 l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~------~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviii 202 (290)
T PRK13634 129 IELVGLPEELLARSPFELSGGQMRRVAIAGVLAM------EPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLV 202 (290)
T ss_pred HHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHc------CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 2233332 23467889999999999999999999 99999999999999 777778888876533459999
Q ss_pred HHhHHHHHHHHHHHHH
Q psy14062 307 ETDLKALEPELRKAVN 322 (388)
Q Consensus 307 tH~l~~l~~~~d~~~~ 322 (388)
||+++.+.+.+|++.-
T Consensus 203 tHd~~~~~~~~drv~~ 218 (290)
T PRK13634 203 THSMEDAARYADQIVV 218 (290)
T ss_pred eCCHHHHHHhCCEEEE
Confidence 9999999999987633
No 103
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.94 E-value=2.2e-29 Score=246.53 Aligned_cols=203 Identities=15% Similarity=0.187 Sum_probs=142.2
Q ss_pred CcEEEEEEEeeceEEecC----ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChh
Q psy14062 73 PRLIITKIVAFNFKSYAG----YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKS 148 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~----~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKS 148 (388)
+.+.+.+++ ++|+. ..+ |+||||+|.+ |++++|+|+||||||
T Consensus 11 ~~L~i~~l~----~~~~~~~~~~~~--------l~~vsl~i~~----------------------Ge~~~ivG~sGsGKS 56 (330)
T PRK09473 11 ALLDVKDLR----VTFSTPDGDVTA--------VNDLNFSLRA----------------------GETLGIVGESGSGKS 56 (330)
T ss_pred ceEEEeCeE----EEEecCCCCEEE--------EeeeEEEEcC----------------------CCEEEEECCCCchHH
Confidence 467777777 77852 234 5599999999 999999999999999
Q ss_pred hHHhhhhhcccEEEcCCC---CCcceeehhhhhhcCcc-chhhhhccceeEeccc--CCCCCcceEEEEEEeccccC-CC
Q psy14062 149 NVIDSMLFRFNAIIGPNG---SGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKS--DQVGGVSRCSVAIHFAQIID-KP 221 (388)
Q Consensus 149 TLl~~i~~~~ngIiGpng---SGKs~i~da~i~vlg~~-~~~lr~~~i~~l~q~~--~~~~~~~~~eV~~~~~~~~~-~~ 221 (388)
||+++|+ |++ ++. +|++.++|..+.-+... ...+|++.++++||++ .+.|.++..+........+. ..
T Consensus 57 TL~~~l~----Gl~-~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~ 131 (330)
T PRK09473 57 QTAFALM----GLL-AANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMS 131 (330)
T ss_pred HHHHHHH----cCC-CCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCC
Confidence 9999999 998 554 89998888765433221 1224556799999997 34455544322111001111 11
Q ss_pred Ccc-ccccCCceEEEEEEe---eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhh
Q psy14062 222 NEE-YEIIPGTDLEIARTA---FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKY 292 (388)
Q Consensus 222 ~~~-~~~~~~~~l~~~r~~---~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l 292 (388)
... .... ...+...++. ...+..+..|||||+||+.||++|+. +|++||+||||++| .++..++
T Consensus 132 ~~~~~~~~-~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~------~P~llilDEPts~LD~~~~~~i~~lL 204 (330)
T PRK09473 132 KAEAFEES-VRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLC------RPKLLIADEPTTALDVTVQAQIMTLL 204 (330)
T ss_pred HHHHHHHH-HHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHc------CCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 110 0000 0112222221 12256789999999999999999999 99999999999999 7788888
Q ss_pred HHHHHHhhhHHHHHHHhHHHHHHHHHHHH
Q psy14062 293 DEERTEKLTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 293 ~el~~e~~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
.+++++...+++++|||+..+.+.+|++.
T Consensus 205 ~~l~~~~g~til~iTHdl~~~~~~~Dri~ 233 (330)
T PRK09473 205 NELKREFNTAIIMITHDLGVVAGICDKVL 233 (330)
T ss_pred HHHHHHcCCEEEEEECCHHHHHHhCCEEE
Confidence 88877644469999999999999988764
No 104
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.94 E-value=1.8e-29 Score=235.07 Aligned_cols=198 Identities=15% Similarity=0.162 Sum_probs=140.1
Q ss_pred EEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 76 IITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 76 ~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.+.++. ++|+++.+++ |+||+|.+ |++++|+||||||||||+++|+
T Consensus 2 ~~~~l~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~l~ 47 (230)
T TIGR03410 2 EVSNLN----VYYGQSHILR--------GVSLEVPK----------------------GEVTCVLGRNGVGKTTLLKTLM 47 (230)
T ss_pred EEEeEE----EEeCCeEEec--------ceeeEECC----------------------CCEEEEECCCCCCHHHHHHHHh
Confidence 345555 6788766655 99999999 9999999999999999999999
Q ss_pred hcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEE
Q psy14062 156 FRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEI 235 (388)
Q Consensus 156 ~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~ 235 (388)
|++ ++.+|++.+.|..+... .....+.+.++|++|++..++..+..++........+.. ..... ...+..
T Consensus 48 ----G~~-~~~~G~i~~~g~~~~~~--~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~--~~~~~-~~~l~~ 117 (230)
T TIGR03410 48 ----GLL-PVKSGSIRLDGEDITKL--PPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRR--SRKIP-DEIYEL 117 (230)
T ss_pred ----CCC-CCCCCEEEECCEECCCC--CHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcc--hHHHH-HHHHHH
Confidence 998 77899988877544311 111222356999999988777655543321111111111 00000 001111
Q ss_pred EE-EeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHh
Q psy14062 236 AR-TAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETD 309 (388)
Q Consensus 236 ~r-~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~ 309 (388)
.. .....+..+..|||||+||+.+|++|+. +|+++|||||+++| ..+...+.+++++...+++++||+
T Consensus 118 ~~~l~~~~~~~~~~LS~G~~qrv~la~al~~------~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 191 (230)
T TIGR03410 118 FPVLKEMLGRRGGDLSGGQQQQLAIARALVT------RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQY 191 (230)
T ss_pred HHhHHHHhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 11 1223467788999999999999999999 99999999999999 777778887776533359999999
Q ss_pred HHHHHHHHHHHHHH
Q psy14062 310 LKALEPELRKAVNF 323 (388)
Q Consensus 310 l~~l~~~~d~~~~y 323 (388)
++.+...+|++..+
T Consensus 192 ~~~~~~~~d~v~~l 205 (230)
T TIGR03410 192 LDFARELADRYYVM 205 (230)
T ss_pred HHHHHHhCCEEEEE
Confidence 99999999876444
No 105
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.94 E-value=3.5e-29 Score=237.07 Aligned_cols=203 Identities=14% Similarity=0.163 Sum_probs=144.6
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ +.|+++.+++ ||||+|.+ |++++|+||||||||||+++
T Consensus 5 ~l~~~~l~----~~~~~~~~l~--------~is~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~ 50 (257)
T PRK10619 5 KLNVIDLH----KRYGEHEVLK--------GVSLQANA----------------------GDVISIIGSSGSGKSTFLRC 50 (257)
T ss_pred cEEEeeeE----EEECCEEEEe--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 56777777 7798777655 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhc----------CccchhhhhccceeEecccCCCCCcceEEEEEE-eccccCCCC
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVF----------GYRASKIRANKLSVLMHKSDQVGGVSRCSVAIH-FAQIIDKPN 222 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vl----------g~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~-~~~~~~~~~ 222 (388)
|+ |++ ++.+|++.+.+..+... .........+.++|++|++..++..+..++..+ ...+.....
T Consensus 51 i~----G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~ 125 (257)
T PRK10619 51 IN----FLE-KPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSK 125 (257)
T ss_pred Hh----CCC-CCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCH
Confidence 99 998 78899988887543210 000111233569999999887776665544321 111111110
Q ss_pred cc-ccccCCceEEEEEEeee-CCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHH
Q psy14062 223 EE-YEIIPGTDLEIARTAFY-DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEE 295 (388)
Q Consensus 223 ~~-~~~~~~~~l~~~r~~~~-~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el 295 (388)
.. .... ...+...++... .+..+..|||||+||+.||++|.. +|+++|||||+++| +.+...+.++
T Consensus 126 ~~~~~~~-~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~l 198 (257)
T PRK10619 126 QEARERA-VKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAM------EPEVLLFDEPTSALDPELVGEVLRIMQQL 198 (257)
T ss_pred HHHHHHH-HHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 00 0000 012222233222 256788999999999999999999 99999999999999 6777788887
Q ss_pred HHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 296 RTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 296 ~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
++.+. +++++||+++.+...||++..+
T Consensus 199 ~~~g~-tiiivsH~~~~~~~~~d~i~~l 225 (257)
T PRK10619 199 AEEGK-TMVVVTHEMGFARHVSSHVIFL 225 (257)
T ss_pred HhcCC-EEEEEeCCHHHHHHhcCEEEEE
Confidence 76554 5999999999999999877444
No 106
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.94 E-value=6.4e-29 Score=257.13 Aligned_cols=199 Identities=19% Similarity=0.240 Sum_probs=146.4
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|+++.+|+ ||||+|.+ |++++|+|||||||||||+
T Consensus 10 ~~l~~~~l~----~~~~~~~il~--------~vsl~i~~----------------------Ge~~~liG~NGsGKSTLl~ 55 (510)
T PRK15439 10 PLLCARSIS----KQYSGVEVLK--------GIDFTLHA----------------------GEVHALLGGNGAGKSTLMK 55 (510)
T ss_pred ceEEEEeEE----EEeCCceeee--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 456677777 7898777655 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCce
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~ 232 (388)
+|+ |++ ++.+|++.+.|..+.. ......+...+++++|++..++..++.++..+... .. ........ ..
T Consensus 56 ~l~----Gl~-~p~~G~i~~~g~~~~~--~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~--~~-~~~~~~~~-~~ 124 (510)
T PRK15439 56 IIA----GIV-PPDSGTLEIGGNPCAR--LTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP--KR-QASMQKMK-QL 124 (510)
T ss_pred HHh----CCC-CCCceEEEECCEECCC--CCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc--cc-hHHHHHHH-HH
Confidence 999 998 7789998877654321 11122334469999999887777776654322111 00 00000100 11
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++....++++..|||||+||+.||++|+. +|++|||||||++| +.+...+.++++++. +|+++|
T Consensus 125 l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~-tiiivt 197 (510)
T PRK15439 125 LAALGCQLDLDSSAGSLEVADRQIVEILRGLMR------DSRILILDEPTASLTPAETERLFSRIRELLAQGV-GIVFIS 197 (510)
T ss_pred HHHcCCCccccCChhhCCHHHHHHHHHHHHHHc------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEe
Confidence 222233334467789999999999999999999 99999999999999 777788888776655 599999
Q ss_pred HhHHHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAVNF 323 (388)
Q Consensus 308 H~l~~l~~~~d~~~~y 323 (388)
|+++.+...||++...
T Consensus 198 Hd~~~~~~~~d~i~~l 213 (510)
T PRK15439 198 HKLPEIRQLADRISVM 213 (510)
T ss_pred CCHHHHHHhCCEEEEE
Confidence 9999999999876433
No 107
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.94 E-value=3.6e-29 Score=232.10 Aligned_cols=187 Identities=18% Similarity=0.157 Sum_probs=128.9
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeeh--h--hh
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVID--S--ML 177 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~d--a--~i 177 (388)
|+|+||+|.+ |++++|+||||||||||+++|+ |++ ++.+|++.+.+ . .+
T Consensus 24 l~~vs~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~i~----G~~-~~~~G~i~~~~~g~~~~~ 76 (224)
T TIGR02324 24 LKNVSLTVNA----------------------GECVALSGPSGAGKSTLLKSLY----ANY-LPDSGRILVRHEGAWVDL 76 (224)
T ss_pred EecceEEECC----------------------CCEEEEECCCCCCHHHHHHHHh----CCC-CCCCCeEEEecCCCccch
Confidence 4499999999 9999999999999999999999 998 77899988863 1 22
Q ss_pred hhcCcc-chhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEee-eCCCCeeeeCCcccc
Q psy14062 178 FVFGYR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAF-YDNSSYYTLNGKKVH 255 (388)
Q Consensus 178 ~vlg~~-~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~-~~~~~~~~LSgGq~q 255 (388)
.-.... ....+.+.+++++|++..++..++.++........+.............+...++.. ..+.++..|||||+|
T Consensus 77 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 156 (224)
T TIGR02324 77 AQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQ 156 (224)
T ss_pred hhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHH
Confidence 111110 012344569999999877766655433221101111110000000001122222222 235678899999999
Q ss_pred HHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 256 FKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 256 r~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
|+.||++|.. +|+++|||||+++| +.+.+.+.++++++. +++++||+++.+...||++..
T Consensus 157 rl~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~-tii~vsH~~~~~~~~~d~i~~ 221 (224)
T TIGR02324 157 RVNIARGFIA------DYPILLLDEPTASLDAANRQVVVELIAEAKARGA-ALIGIFHDEEVRELVADRVMD 221 (224)
T ss_pred HHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHhcceeEe
Confidence 9999999999 99999999999999 667777777765554 599999999999999987643
No 108
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.2e-29 Score=240.29 Aligned_cols=200 Identities=19% Similarity=0.221 Sum_probs=139.0
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|++... ..+|+||||+|.+ |++++|+||||||||||+++
T Consensus 4 ~l~~~~l~----~~~~~~~~-----~~~l~~vsl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~ 52 (279)
T PRK13650 4 IIEVKNLT----FKYKEDQE-----KYTLNDVSFHVKQ----------------------GEWLSIIGHNGSGKSTTVRL 52 (279)
T ss_pred eEEEEeEE----EEcCCCCc-----CeeeeeeEEEEeC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 56677777 77864210 0135599999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccC-CCCCcceEEEEEEeccccCCCCcc-ccccCCc
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD-QVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGT 231 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~-~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~ 231 (388)
|+ |++ ++.+|++.+.|..+.- ......+ +.++++||++. .++..++.+...+.....+..... .... ..
T Consensus 53 l~----Gl~-~p~~G~i~~~g~~i~~--~~~~~~~-~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~-~~ 123 (279)
T PRK13650 53 ID----GLL-EAESGQIIIDGDLLTE--ENVWDIR-HKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERV-NE 123 (279)
T ss_pred Hh----cCC-CCCCcEEEECCEECCc--CcHHHHH-hhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHH-HH
Confidence 99 998 7789998887765421 1112233 56999999873 444445443322111111111100 0111 11
Q ss_pred eEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHH
Q psy14062 232 DLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLV 306 (388)
Q Consensus 232 ~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~v 306 (388)
.+...++....++.+..|||||+||+.||++|+. +|++||||||+++| ..+...+.+++++...+++++
T Consensus 124 ~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~------~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiliv 197 (279)
T PRK13650 124 ALELVGMQDFKEREPARLSGGQKQRVAIAGAVAM------RPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISI 197 (279)
T ss_pred HHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc------CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 2223333344567889999999999999999999 99999999999999 677778888876533459999
Q ss_pred HHhHHHHHHHHHHH
Q psy14062 307 ETDLKALEPELRKA 320 (388)
Q Consensus 307 tH~l~~l~~~~d~~ 320 (388)
||+++.+. .||++
T Consensus 198 tH~~~~~~-~~dri 210 (279)
T PRK13650 198 THDLDEVA-LSDRV 210 (279)
T ss_pred ecCHHHHH-hCCEE
Confidence 99999984 78875
No 109
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.6e-29 Score=241.74 Aligned_cols=208 Identities=14% Similarity=0.194 Sum_probs=139.2
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|++.. ++...+|+||||+|.+ |++++|+||||||||||+++|
T Consensus 3 l~~~~l~----~~y~~~~---~~~~~~l~~vsl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~L 53 (286)
T PRK13646 3 IRFDNVS----YTYQKGT---PYEHQAIHDVNTEFEQ----------------------GKYYAIVGQTGSGKSTLIQNI 53 (286)
T ss_pred EEEEEEE----EEECCCC---ccccCceeeeEEEEcC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 4555666 6786421 0111235599999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCc-cchhhhhccceeEecccC--CCCCcceEEEEEEeccccCCCCccccccCCc
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSD--QVGGVSRCSVAIHFAQIIDKPNEEYEIIPGT 231 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~-~~~~lr~~~i~~l~q~~~--~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~ 231 (388)
+ |++ ++.+|++.++|..+..... ......++.++++||++. .++ .++.++..+.....+............
T Consensus 54 ~----Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~ 127 (286)
T PRK13646 54 N----ALL-KPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHR 127 (286)
T ss_pred h----cCC-CCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHH
Confidence 9 999 7789999888765432111 011122356999999863 332 243332221111111111100000011
Q ss_pred eEEEEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 232 DLEIARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 232 ~l~~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
.+...++. ...+..+..|||||+||+.||++|+. +|+++|||||+++| ..+..++.+++++...+|++
T Consensus 128 ~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~------~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~ 201 (286)
T PRK13646 128 LLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAM------NPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIIL 201 (286)
T ss_pred HHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHh------CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 22222332 23457899999999999999999999 99999999999999 77778888887653346999
Q ss_pred HHHhHHHHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKAVNF 323 (388)
Q Consensus 306 vtH~l~~l~~~~d~~~~y 323 (388)
+||+++.+.+.+|++..+
T Consensus 202 vtH~~~~~~~~~dri~~l 219 (286)
T PRK13646 202 VSHDMNEVARYADEVIVM 219 (286)
T ss_pred EecCHHHHHHhCCEEEEE
Confidence 999999999998876433
No 110
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.94 E-value=1.2e-29 Score=232.05 Aligned_cols=191 Identities=18% Similarity=0.208 Sum_probs=132.9
Q ss_pred EEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC
Q psy14062 86 KSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN 165 (388)
Q Consensus 86 ksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn 165 (388)
++|+++.++. ||||+|.+ |++++|+||||||||||+++|+ |++ ++
T Consensus 6 ~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l~----G~~-~~ 50 (206)
T TIGR03608 6 KKFGDKIILD--------DLNLTIEK----------------------GKMYAIIGESGSGKSTLLNIIG----LLE-KF 50 (206)
T ss_pred EEECCEEEEe--------ceEEEEeC----------------------CcEEEEECCCCCCHHHHHHHHh----cCC-CC
Confidence 5688766655 99999999 9999999999999999999999 998 77
Q ss_pred CCCcceeehhhhhhcCc-cchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCCceEEEEEEeeeCC
Q psy14062 166 GSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGTDLEIARTAFYDN 243 (388)
Q Consensus 166 gSGKs~i~da~i~vlg~-~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~~l~~~r~~~~~~ 243 (388)
.+|++.+.+..+..... .....+.+.+++++|.+..++..+..++........+..... ...+ ...+...++....+
T Consensus 51 ~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~-~~~l~~~~l~~~~~ 129 (206)
T TIGR03608 51 DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKK-KEALEKVGLNLKLK 129 (206)
T ss_pred CCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHH-HHHHHHcCchhhhc
Confidence 89998887765321111 111233457999999988776666544322111111111000 0000 01222223333446
Q ss_pred CCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHH
Q psy14062 244 SSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELR 318 (388)
Q Consensus 244 ~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d 318 (388)
+.+..|||||+||+.||++|+. +|+++|||||+++| +.+.+.++++.+++. +++++||+++.+ ..+|
T Consensus 130 ~~~~~lS~G~~qr~~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-tii~~sh~~~~~-~~~d 201 (206)
T TIGR03608 130 QKIYELSGGEQQRVALARAILK------DPPLILADEPTGSLDPKNRDEVLDLLLELNDEGK-TIIIVTHDPEVA-KQAD 201 (206)
T ss_pred CChhhCCHHHHHHHHHHHHHHc------CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCC-EEEEEeCCHHHH-hhcC
Confidence 6788999999999999999999 99999999999999 667778877765544 599999999865 4565
Q ss_pred HH
Q psy14062 319 KA 320 (388)
Q Consensus 319 ~~ 320 (388)
++
T Consensus 202 ~i 203 (206)
T TIGR03608 202 RV 203 (206)
T ss_pred EE
Confidence 43
No 111
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5e-29 Score=237.16 Aligned_cols=202 Identities=16% Similarity=0.181 Sum_probs=143.9
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|+++.+++ |+||+|.+ |++++|+||||||||||++
T Consensus 10 ~~l~i~~l~----~~~~~~~il~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~ 55 (265)
T PRK10575 10 TTFALRNVS----FRVPGRTLLH--------PLSLTFPA----------------------GKVTGLIGHNGSGKSTLLK 55 (265)
T ss_pred ceEEEeeEE----EEECCEEEEe--------eeeeEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 356777777 7898776655 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEec-ccc---CCCCc-cccc
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFA-QII---DKPNE-EYEI 227 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~-~~~---~~~~~-~~~~ 227 (388)
+|+ |++ ++.+|++.+.|..+.-. ..... .+.+++++|.+..++..+..++..... ... ..... ....
T Consensus 56 ~l~----Gl~-~~~~G~i~~~g~~~~~~--~~~~~-~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 127 (265)
T PRK10575 56 MLG----RHQ-PPSEGEILLDAQPLESW--SSKAF-ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREK 127 (265)
T ss_pred HHc----CCC-CCCCCEEEECCEehhhC--CHHHH-hhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHH
Confidence 999 998 77899988877654311 11222 346999999877666655543221110 000 00000 0000
Q ss_pred cCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhH
Q psy14062 228 IPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTR 302 (388)
Q Consensus 228 ~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ 302 (388)
+. ..+...++..+.+..+..|||||+||+.+|++|+. +|+++|||||+++| +.+...+.++.++...+
T Consensus 128 ~~-~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~------~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~t 200 (265)
T PRK10575 128 VE-EAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQ------DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLT 200 (265)
T ss_pred HH-HHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 11 12222233334467788999999999999999999 99999999999999 66778888877653335
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q psy14062 303 VQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 303 ii~vtH~l~~l~~~~d~~~~y 323 (388)
++++||+++.+.+.+|++...
T Consensus 201 iii~sH~~~~i~~~~d~i~~l 221 (265)
T PRK10575 201 VIAVLHDINMAARYCDYLVAL 221 (265)
T ss_pred EEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999876443
No 112
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.94 E-value=3.5e-29 Score=234.82 Aligned_cols=200 Identities=20% Similarity=0.223 Sum_probs=142.0
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|++..++. ++||+|.+ |++++|+||||||||||+++
T Consensus 2 ~i~~~~l~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~ 47 (242)
T TIGR03411 2 ILYLEGLS----VSFDGFKALN--------DLSLYVDP----------------------GELRVIIGPNGAGKTTMMDV 47 (242)
T ss_pred eEEEEeeE----EEcCCeEEee--------eeeEEEcC----------------------CcEEEEECCCCCCHHHHHHH
Confidence 45666676 7798766654 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEecc--------ccCCC-Ccc
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ--------IIDKP-NEE 224 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~--------~~~~~-~~~ 224 (388)
|+ |++ ++.+|++.+++..+.. ......+...+++++|++..++..++.++...... ++... ...
T Consensus 48 l~----G~~-~p~~G~i~~~g~~~~~--~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~ 120 (242)
T TIGR03411 48 IT----GKT-RPDEGSVLFGGTDLTG--LPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEE 120 (242)
T ss_pred Hh----CCC-CCCCCeEEECCeecCC--CCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHH
Confidence 99 998 7789998887754321 11122233469999999888877666543211100 00000 000
Q ss_pred ccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 225 YEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 225 ~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
.... ...+...+.....+..+..|||||+||+.+|++|+. +|+++|||||+++| ..+...+.++.+ +
T Consensus 121 ~~~~-~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~------~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~ 192 (242)
T TIGR03411 121 KDRI-EEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQ------DPKLLLLDEPVAGMTDEETEKTAELLKSLAG-K 192 (242)
T ss_pred HHHH-HHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc------CCCEEEecCCccCCCHHHHHHHHHHHHHHhc-C
Confidence 0000 112222233334467788999999999999999999 99999999999999 667777777755 3
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
. +++++||+++.+...||++...
T Consensus 193 ~-tii~~sH~~~~~~~~~d~i~~l 215 (242)
T TIGR03411 193 H-SVVVVEHDMEFVRSIADKVTVL 215 (242)
T ss_pred C-EEEEEECCHHHHHHhCCEEEEE
Confidence 3 5999999999999999876443
No 113
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.5e-29 Score=234.88 Aligned_cols=201 Identities=15% Similarity=0.180 Sum_probs=140.0
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|+++.++. |+||++.+ |++++|+||||||||||+++|
T Consensus 3 l~~~~l~----~~~~~~~il~--------~vsl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l 48 (242)
T PRK11124 3 IQLNGIN----CFYGAHQALF--------DITLDCPQ----------------------GETLVLLGPSGAGKSSLLRVL 48 (242)
T ss_pred EEEEeeE----EEECCeeeEe--------eeeeEEcC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 3444555 6788776655 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcC-cc--chhhhhccceeEecccCCCCCcceEEEEEE-eccccCCCCccccccCC
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFG-YR--ASKIRANKLSVLMHKSDQVGGVSRCSVAIH-FAQIIDKPNEEYEIIPG 230 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg-~~--~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~-~~~~~~~~~~~~~~~~~ 230 (388)
+ |+. ++.+|++.+.+..+.... .. .....++.+++++|++..++..+..++... .....+...........
T Consensus 49 ~----G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~ 123 (242)
T PRK11124 49 N----LLE-MPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAE 123 (242)
T ss_pred h----CCC-CCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9 998 778999888776542111 00 111123469999999887776666543321 11111111100000000
Q ss_pred ceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 231 TDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 231 ~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
..+...++....+..+..|||||+||+.||++|+. +|+++|+|||+++| +.+...+.++++++. ++++
T Consensus 124 ~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~------~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~-tii~ 196 (242)
T PRK11124 124 KLLERLRLKPYADRFPLHLSGGQQQRVAIARALMM------EPQVLLFDEPTAALDPEITAQIVSIIRELAETGI-TQVI 196 (242)
T ss_pred HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCC-EEEE
Confidence 11222233333467789999999999999999999 99999999999999 666677777765554 5999
Q ss_pred HHHhHHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKAV 321 (388)
Q Consensus 306 vtH~l~~l~~~~d~~~ 321 (388)
+||++..+...+|++.
T Consensus 197 ~sh~~~~~~~~~d~i~ 212 (242)
T PRK11124 197 VTHEVEVARKTASRVV 212 (242)
T ss_pred EeCCHHHHHHhcCEEE
Confidence 9999999998888753
No 114
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=4.6e-28 Score=217.12 Aligned_cols=164 Identities=17% Similarity=0.224 Sum_probs=124.2
Q ss_pred EEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 77 i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.++. ++|+++.++. ++||++.+ |++++|+||||||||||+++|+
T Consensus 3 ~~~l~----~~~~~~~~l~--------~i~~~i~~----------------------G~~~~i~G~nGsGKSTLl~~l~- 47 (178)
T cd03229 3 LKNVS----KRYGQKTVLN--------DVSLNIEA----------------------GEIVALLGPSGSGKSTLLRCIA- 47 (178)
T ss_pred EEEEE----EEECCeEEEe--------eeeEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh-
Confidence 44555 6687766654 99999999 9999999999999999999999
Q ss_pred cccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEE
Q psy14062 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIA 236 (388)
Q Consensus 157 ~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (388)
|++ ++.+|++.+.+..+.-... ....+.+.+++++|++..++..+..++.. .
T Consensus 48 ---G~~-~~~~G~i~~~g~~~~~~~~-~~~~~~~~i~~~~q~~~~~~~~t~~~~l~----------------------~- 99 (178)
T cd03229 48 ---GLE-EPDSGSILIDGEDLTDLED-ELPPLRRRIGMVFQDFALFPHLTVLENIA----------------------L- 99 (178)
T ss_pred ---CCC-CCCceEEEECCEEccccch-hHHHHhhcEEEEecCCccCCCCCHHHhee----------------------e-
Confidence 998 7789998887754321100 01223456899998765443333211100 0
Q ss_pred EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHH
Q psy14062 237 RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLK 311 (388)
Q Consensus 237 r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~ 311 (388)
.|||||+||+.+|++|+. +|+++|||||+++| ..+...+.+++++...+++++||+++
T Consensus 100 -----------~lS~G~~qr~~la~al~~------~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 162 (178)
T cd03229 100 -----------GLSGGQQQRVALARALAM------DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD 162 (178)
T ss_pred -----------cCCHHHHHHHHHHHHHHC------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 099999999999999999 99999999999999 66777888877762335999999999
Q ss_pred HHHHHHHHH
Q psy14062 312 ALEPELRKA 320 (388)
Q Consensus 312 ~l~~~~d~~ 320 (388)
.+...+|++
T Consensus 163 ~~~~~~d~i 171 (178)
T cd03229 163 EAARLADRV 171 (178)
T ss_pred HHHHhcCEE
Confidence 998888764
No 115
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.5e-29 Score=242.78 Aligned_cols=208 Identities=15% Similarity=0.132 Sum_probs=140.3
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+.+.+.+++ ++|++.. +....+|+||||+|.+ |++++|+||||||||||++
T Consensus 20 ~~l~~~nl~----~~y~~~~---~~~~~~L~~vsl~i~~----------------------Ge~~~I~G~nGsGKSTLl~ 70 (320)
T PRK13631 20 IILRVKNLY----CVFDEKQ---ENELVALNNISYTFEK----------------------NKIYFIIGNSGSGKSTLVT 70 (320)
T ss_pred ceEEEEeEE----EEeCCCC---cccccceeeeEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 467777777 7786421 0111245699999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhc-----------Cc--cchhhhhccceeEecccC--CCCCcceEEEEEEeccc
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVF-----------GY--RASKIRANKLSVLMHKSD--QVGGVSRCSVAIHFAQI 217 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vl-----------g~--~~~~lr~~~i~~l~q~~~--~~~~~~~~eV~~~~~~~ 217 (388)
+|+ |++ ++.+|++.+.|..+.-. .. ......++.++++||++. .++ .+..++..+....
T Consensus 71 ~L~----Gl~-~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~ 144 (320)
T PRK13631 71 HFN----GLI-KSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVA 144 (320)
T ss_pred HHh----CCC-CCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHh
Confidence 999 998 77899998887543210 00 011122356999999873 443 2433322211110
Q ss_pred cCCCCccccccCCceEEEEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhh
Q psy14062 218 IDKPNEEYEIIPGTDLEIARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGK 291 (388)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~ 291 (388)
.+.............+...++. ...++.+..|||||+||+.||++|+. +|++|||||||++| ..+...
T Consensus 145 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~------~p~iLLLDEPtsgLD~~~~~~l~~~ 218 (320)
T PRK13631 145 LGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAI------QPEILIFDEPTAGLDPKGEHEMMQL 218 (320)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHc------CCCEEEEECCccCCCHHHHHHHHHH
Confidence 1111110000001122222332 23467789999999999999999999 99999999999999 667778
Q ss_pred hHHHHHHhhhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 292 YDEERTEKLTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 292 l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
+.+++.++. +|+++||+++.+.+.||++..
T Consensus 219 L~~l~~~g~-TiiivtHd~~~~~~~adri~v 248 (320)
T PRK13631 219 ILDAKANNK-TVFVITHTMEHVLEVADEVIV 248 (320)
T ss_pred HHHHHHCCC-EEEEEecCHHHHHHhCCEEEE
Confidence 877765554 599999999999998887533
No 116
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.94 E-value=3.7e-29 Score=232.50 Aligned_cols=196 Identities=16% Similarity=0.182 Sum_probs=135.2
Q ss_pred EEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 76 IITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 76 ~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.+.+++ ++|+++.+++ |+||+|.+ |++++|+||||||||||+++|+
T Consensus 2 ~~~~l~----~~~~~~~~l~--------~vsl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~i~ 47 (227)
T cd03260 2 ELRDLN----VYYGDKHALK--------DISLDIPK----------------------GEITALIGPSGCGKSTLLRLLN 47 (227)
T ss_pred EEEEEE----EEcCCceeee--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHHHHH
Confidence 345555 6788766654 99999999 9999999999999999999999
Q ss_pred hcccEEE----cCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCc--cccccC
Q psy14062 156 FRFNAII----GPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNE--EYEIIP 229 (388)
Q Consensus 156 ~~~ngIi----GpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~--~~~~~~ 229 (388)
|++ +++.+|++.+.|..+........ ..++.+++++|++..+ ..++.++........+.... ......
T Consensus 48 ----G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~-~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 121 (227)
T cd03260 48 ----RLNDLIPGAPDEGEVLLDGKDIYDLDVDVL-ELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVE 121 (227)
T ss_pred ----hhcccccCCCCCeEEEECCEEhhhcchHHH-HHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHH
Confidence 887 14569998887765432211011 2235699999998766 45554432211111111000 000000
Q ss_pred CceEEEEEEeeeCCCC--eeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhH
Q psy14062 230 GTDLEIARTAFYDNSS--YYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTR 302 (388)
Q Consensus 230 ~~~l~~~r~~~~~~~~--~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ 302 (388)
..+...++....+.. +..|||||+||+.||++|+. +|+++||||||++| +.+.+.+.+++++ .+
T Consensus 122 -~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~t 192 (227)
T cd03260 122 -EALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN------EPEVLLLDEPTSALDPISTAKIEELIAELKKE--YT 192 (227)
T ss_pred -HHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cE
Confidence 112222222222333 58999999999999999999 99999999999999 6777788887665 45
Q ss_pred HHHHHHhHHHHHHHHHHH
Q psy14062 303 VQLVETDLKALEPELRKA 320 (388)
Q Consensus 303 ii~vtH~l~~l~~~~d~~ 320 (388)
++++||+++.+...+|++
T Consensus 193 ii~~sH~~~~~~~~~d~i 210 (227)
T cd03260 193 IVIVTHNMQQAARVADRT 210 (227)
T ss_pred EEEEeccHHHHHHhCCEE
Confidence 999999999999888865
No 117
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.94 E-value=4.9e-29 Score=234.68 Aligned_cols=199 Identities=17% Similarity=0.174 Sum_probs=138.3
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|++..++. |+||+|.+ |++++|+||||||||||+++|
T Consensus 2 l~~~~l~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l 47 (247)
T TIGR00972 2 IEIENLN----LFYGEKEALK--------NINLDIPK----------------------NQVTALIGPSGCGKSTLLRSL 47 (247)
T ss_pred EEEEEEE----EEECCeeeec--------ceeEEECC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 4566666 7798766654 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCC-----CCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCC-CCcccccc
Q psy14062 155 LFRFNAIIGPNG-----SGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK-PNEEYEII 228 (388)
Q Consensus 155 ~~~~ngIiGpng-----SGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~-~~~~~~~~ 228 (388)
+ |+. ++. +|++.++|..+.-.... ...+++.++++||++..++ .+..++........+. ........
T Consensus 48 ~----G~~-~p~~~~~~~G~i~~~g~~~~~~~~~-~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~ 120 (247)
T TIGR00972 48 N----RMN-DLVPGVRIEGKVLFDGQDIYDKKID-VVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEI 120 (247)
T ss_pred h----ccC-CCCcCCCCceEEEECCEEccccccc-hHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHH
Confidence 9 998 655 89988877544211011 1122356999999987766 5554432211111110 00000000
Q ss_pred CCceEEEEEEe----eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 229 PGTDLEIARTA----FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 229 ~~~~l~~~r~~----~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
....+...++. ...+..+..|||||+||+.||++|+. +|+++|||||+++| ..+...+.++++.
T Consensus 121 ~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~- 193 (247)
T TIGR00972 121 VEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAV------EPEVLLLDEPTSALDPIATGKIEELIQELKKK- 193 (247)
T ss_pred HHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-
Confidence 00111111221 23456788999999999999999999 99999999999999 6677788777653
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
.+++++||+++.+...+|++..
T Consensus 194 -~tiiivsH~~~~~~~~~d~i~~ 215 (247)
T TIGR00972 194 -YTIVIVTHNMQQAARISDRTAF 215 (247)
T ss_pred -CeEEEEecCHHHHHHhCCEEEE
Confidence 3699999999999999987643
No 118
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.8e-29 Score=241.55 Aligned_cols=188 Identities=18% Similarity=0.191 Sum_probs=129.3
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhc-
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVF- 180 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vl- 180 (388)
|+||||+|.+ |++++|+||||||||||+++|+ |++ ++.+|++.+++..+...
T Consensus 23 l~~vsl~i~~----------------------Ge~~~iiG~NGaGKSTLl~~l~----Gl~-~p~~G~i~~~g~~~~~~~ 75 (287)
T PRK13641 23 LDNISFELEE----------------------GSFVALVGHTGSGKSTLMQHFN----ALL-KPSSGTITIAGYHITPET 75 (287)
T ss_pred eeeeEEEEeC----------------------CCEEEEECCCCCCHHHHHHHHh----cCC-CCCCcEEEECCEECcccc
Confidence 5599999999 9999999999999999999999 998 77899988877544211
Q ss_pred CccchhhhhccceeEecccC-CCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEe-eeCCCCeeeeCCccccHHH
Q psy14062 181 GYRASKIRANKLSVLMHKSD-QVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTA-FYDNSSYYTLNGKKVHFKE 258 (388)
Q Consensus 181 g~~~~~lr~~~i~~l~q~~~-~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~-~~~~~~~~~LSgGq~qr~~ 258 (388)
.......++..+++++|++. .+...++.+...+.....+.............+...++. ...++++..|||||+||+.
T Consensus 76 ~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~ 155 (287)
T PRK13641 76 GNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVA 155 (287)
T ss_pred ccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHH
Confidence 00111223356999999863 222334333221110111111110000001122223332 2346788999999999999
Q ss_pred HHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 259 VAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 259 Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
||++|+. +|++||||||+++| ..+...+.++++++. +|+++||+++.+.+.||++...
T Consensus 156 laral~~------~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~-tvlivsH~~~~~~~~~d~v~~l 218 (287)
T PRK13641 156 IAGVMAY------EPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGH-TVILVTHNMDDVAEYADDVLVL 218 (287)
T ss_pred HHHHHHc------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999 99999999999999 667778877765544 5999999999999999976433
No 119
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=6.9e-29 Score=234.80 Aligned_cols=199 Identities=20% Similarity=0.272 Sum_probs=140.5
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|+++.+|. +|||++.+ |++++|+||||||||||+++|
T Consensus 3 l~~~~l~----~~~~~~~il~--------~is~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~l 48 (255)
T PRK11231 3 LRTENLT----VGYGTKRILN--------DLSLSLPT----------------------GKITALIGPNGCGKSTLLKCF 48 (255)
T ss_pred EEEEeEE----EEECCEEEEe--------eeeeEEcC----------------------CcEEEEECCCCCCHHHHHHHH
Confidence 4445555 6798777655 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEe-c---cccCCCCcc-ccccC
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHF-A---QIIDKPNEE-YEIIP 229 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~-~---~~~~~~~~~-~~~~~ 229 (388)
+ |++ ++.+|++.+.+..+.-. ..... .+.+++++|++..++..+..++..+. . ..++..... ....
T Consensus 49 ~----Gl~-~~~~G~i~~~g~~~~~~--~~~~~-~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~- 119 (255)
T PRK11231 49 A----RLL-TPQSGTVFLGDKPISML--SSRQL-ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARV- 119 (255)
T ss_pred h----CCc-CCCCcEEEECCEEhHHC--CHHHH-hhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHH-
Confidence 9 998 77899988877544311 11122 34699999998776655544322111 0 001100000 0000
Q ss_pred CceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHH
Q psy14062 230 GTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQ 304 (388)
Q Consensus 230 ~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii 304 (388)
...+...++..+.+..+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.++..++. +++
T Consensus 120 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~-tii 192 (255)
T PRK11231 120 NQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQ------DTPVVLLDEPTTYLDINHQVELMRLMRELNTQGK-TVV 192 (255)
T ss_pred HHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCC-EEE
Confidence 112222233334467889999999999999999999 99999999999999 667777777765554 599
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q psy14062 305 LVETDLKALEPELRKAVNF 323 (388)
Q Consensus 305 ~vtH~l~~l~~~~d~~~~y 323 (388)
++||+++.+.+.+|++...
T Consensus 193 i~tH~~~~~~~~~d~i~~l 211 (255)
T PRK11231 193 TVLHDLNQASRYCDHLVVL 211 (255)
T ss_pred EEECCHHHHHHhcCEEEEE
Confidence 9999999999999976443
No 120
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=7.5e-29 Score=228.66 Aligned_cols=194 Identities=14% Similarity=0.166 Sum_probs=139.9
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|+++.++. ++||+|.+ |++++|+||||||||||++
T Consensus 10 ~~l~~~~l~----~~~~~~~il~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~ 55 (214)
T PRK13543 10 PLLAAHALA----FSRNEEPVFG--------PLDFHVDA----------------------GEALLVQGDNGAGKTTLLR 55 (214)
T ss_pred ceEEEeeEE----EecCCceeee--------cceEEECC----------------------CCEEEEEcCCCCCHHHHHH
Confidence 357777777 7898776654 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCce
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~ 232 (388)
+|+ |++ ++.+|++.+.|..+.. . .+.+.+++++|.+..++..+..++........+.... ... ...
T Consensus 56 ~i~----G~~-~~~~G~i~~~g~~i~~-----~-~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~--~~~-~~~ 121 (214)
T PRK13543 56 VLA----GLL-HVESGQIQIDGKTATR-----G-DRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAK--QMP-GSA 121 (214)
T ss_pred HHh----CCC-CCCCeeEEECCEEccc-----h-hhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHH--HHH-HHH
Confidence 999 998 7789998887654321 1 1234689999987766555544332111111111000 000 011
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++....+..+..|||||+||+.+|++|+. +|+++|+|||+++| +.+...+.++.+++. +++++|
T Consensus 122 l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-tiii~s 194 (214)
T PRK13543 122 LAIVGLAGYEDTLVRQLSAGQKKRLALARLWLS------PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGG-AALVTT 194 (214)
T ss_pred HHHcCChhhccCChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCC-EEEEEe
Confidence 122222233467788999999999999999999 99999999999999 666667777766655 599999
Q ss_pred HhHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAV 321 (388)
Q Consensus 308 H~l~~l~~~~d~~~ 321 (388)
|+++.+.++++++.
T Consensus 195 H~~~~~~~~~~~i~ 208 (214)
T PRK13543 195 HGAYAAPPVRTRML 208 (214)
T ss_pred cChhhhhhhcceEE
Confidence 99999999988753
No 121
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=8.2e-29 Score=256.14 Aligned_cols=202 Identities=17% Similarity=0.197 Sum_probs=145.7
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|++..+++ ||||+|.+ |++++|+||||||||||++
T Consensus 4 ~~l~~~nl~----~~~~~~~il~--------~isl~i~~----------------------Ge~~~l~G~nGsGKSTLl~ 49 (506)
T PRK13549 4 YLLEMKNIT----KTFGGVKALD--------NVSLKVRA----------------------GEIVSLCGENGAGKSTLMK 49 (506)
T ss_pred ceEEEeeeE----EEeCCeEeec--------ceeEEEeC----------------------CeEEEEECCCCCCHHHHHH
Confidence 356677777 7898776655 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcC-CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEecccc--CC-CCcc-ccc
Q psy14062 153 SMLFRFNAIIGP-NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQII--DK-PNEE-YEI 227 (388)
Q Consensus 153 ~i~~~~ngIiGp-ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~--~~-~~~~-~~~ 227 (388)
+|+ |++-| +.+|++.+.|..+.. ......+++.++++||++..++..++.++..+..... .. .... ...
T Consensus 50 ~l~----Gl~~~~~~~G~i~~~g~~~~~--~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 123 (506)
T PRK13549 50 VLS----GVYPHGTYEGEIIFEGEELQA--SNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLR 123 (506)
T ss_pred HHh----CCCCCCCCCeEEEECCEECCC--CCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHH
Confidence 999 99833 379998887754421 1112233456999999988777777665433221111 00 0000 001
Q ss_pred cCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhH
Q psy14062 228 IPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTR 302 (388)
Q Consensus 228 ~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ 302 (388)
+. ..+...++....++.+..|||||+||+.||++|+. +|++|||||||++| ..+.+.+.++++++. +
T Consensus 124 ~~-~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~-t 195 (506)
T PRK13549 124 AQ-KLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNK------QARLLILDEPTASLTESETAVLLDIIRDLKAHGI-A 195 (506)
T ss_pred HH-HHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC-E
Confidence 11 12222233334467788999999999999999999 99999999999999 777778888766554 5
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q psy14062 303 VQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 303 ii~vtH~l~~l~~~~d~~~~ 322 (388)
++++||+++.+...||++..
T Consensus 196 vi~~tH~~~~~~~~~d~v~~ 215 (506)
T PRK13549 196 CIYISHKLNEVKAISDTICV 215 (506)
T ss_pred EEEEeCcHHHHHHhcCEEEE
Confidence 99999999999999987643
No 122
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5e-29 Score=238.89 Aligned_cols=198 Identities=18% Similarity=0.184 Sum_probs=138.4
Q ss_pred cEEEEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
++.+.+++ ++|++ +.+ |++|||+|.+ |++++|+||||||||||+
T Consensus 5 ~l~~~~l~----~~~~~~~~~~--------l~~vsl~i~~----------------------Ge~~~i~G~nGaGKSTLl 50 (279)
T PRK13635 5 IIRVEHIS----FRYPDAATYA--------LKDVSFSVYE----------------------GEWVAIVGHNGSGKSTLA 50 (279)
T ss_pred eEEEEEEE----EEeCCCCccc--------eeeeEEEEcC----------------------CCEEEEECCCCCcHHHHH
Confidence 46666666 67864 334 4599999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccC-CCCCcceEEEEEEeccccCCCCccccccCC
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD-QVGGVSRCSVAIHFAQIIDKPNEEYEIIPG 230 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~-~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~ 230 (388)
++|+ |++ ++.+|++.++|..+. ...... +.+.++|+||++. .++..++.++........+...........
T Consensus 51 ~~i~----G~~-~p~~G~i~~~g~~i~--~~~~~~-~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~ 122 (279)
T PRK13635 51 KLLN----GLL-LPEAGTITVGGMVLS--EETVWD-VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVD 122 (279)
T ss_pred HHHh----cCC-CCCCcEEEECCEECC--cCcHHH-HhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHH
Confidence 9999 998 778999988876542 111122 2356999999873 444445443322111111111100000001
Q ss_pred ceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 231 TDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 231 ~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
..+...++....+..+..|||||+||+.||++|+. +|++||||||+++| ..+...+.++.++...+|++
T Consensus 123 ~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~------~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tili 196 (279)
T PRK13635 123 QALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLAL------QPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLS 196 (279)
T ss_pred HHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 12222333344567889999999999999999999 99999999999999 67777888877653345999
Q ss_pred HHHhHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKA 320 (388)
Q Consensus 306 vtH~l~~l~~~~d~~ 320 (388)
+||+++.+.. +|++
T Consensus 197 vsH~~~~~~~-~d~i 210 (279)
T PRK13635 197 ITHDLDEAAQ-ADRV 210 (279)
T ss_pred EecCHHHHHc-CCEE
Confidence 9999999874 8865
No 123
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.94 E-value=8.5e-29 Score=235.11 Aligned_cols=207 Identities=14% Similarity=0.184 Sum_probs=143.5
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|++..+++ ++||+|.+ |++++|+||||||||||++
T Consensus 3 ~~l~~~nl~----~~~~~~~il~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~ 48 (262)
T PRK09984 3 TIIRVEKLA----KTFNQHQALH--------AVDLNIHH----------------------GEMVALLGPSGSGKSTLLR 48 (262)
T ss_pred cEEEEeeEE----EEeCCeEEEe--------cceEEEcC----------------------CcEEEEECCCCCCHHHHHH
Confidence 466777777 7798777755 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCC--CCcceeehhhhhhcCcc--chhhhhccceeEecccCCCCCcceEEEEEEecc----c----cCC
Q psy14062 153 SMLFRFNAIIGPNG--SGKSNVIDSMLFVFGYR--ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ----I----IDK 220 (388)
Q Consensus 153 ~i~~~~ngIiGpng--SGKs~i~da~i~vlg~~--~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~----~----~~~ 220 (388)
+|+ |++-|.. +|++.++|..+...+.. ......+.++|+||++..++..+..++...... . .+.
T Consensus 49 ~i~----G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 124 (262)
T PRK09984 49 HLS----GLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSW 124 (262)
T ss_pred HHh----ccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhccc
Confidence 999 9984432 59988877654322110 011123469999999887776565433211100 0 000
Q ss_pred CCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHH
Q psy14062 221 PNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEE 295 (388)
Q Consensus 221 ~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el 295 (388)
............+...++....+..+..|||||+||+.||++|+. +|++||||||+++| +.+...+.++
T Consensus 125 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~ 198 (262)
T PRK09984 125 FTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQ------QAKVILADEPIASLDPESARIVMDTLRDI 198 (262)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhc------CCCEEEecCccccCCHHHHHHHHHHHHHH
Confidence 000000000112222233333467889999999999999999999 99999999999999 6777788887
Q ss_pred HHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 296 RTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 296 ~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
.++...+++++||+++.+.+.+|++..+
T Consensus 199 ~~~~g~tvii~tH~~~~~~~~~d~i~~l 226 (262)
T PRK09984 199 NQNDGITVVVTLHQVDYALRYCERIVAL 226 (262)
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 6653346999999999999999876444
No 124
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.94 E-value=4.1e-29 Score=232.10 Aligned_cols=207 Identities=18% Similarity=0.171 Sum_probs=143.0
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.++. ++|+++.+++ ||||+|.+ |++++|+||||||||||++
T Consensus 6 ~~i~~~~l~----~~~~~~~il~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~ 51 (225)
T PRK10247 6 PLLQLQNVG----YLAGDAKILN--------NISFSLRA----------------------GEFKLITGPSGCGKSTLLK 51 (225)
T ss_pred ceEEEeccE----EeeCCceeee--------ccEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 356666666 7798777655 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCce
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~ 232 (388)
+|+ |++ ++.+|++.+.+..+.-. .... ++..++++||++..++. +..++.............. .... ..
T Consensus 52 ~l~----G~~-~~~~G~i~~~g~~~~~~--~~~~-~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~~~~~-~~~~-~~ 120 (225)
T PRK10247 52 IVA----SLI-SPTSGTLLFEGEDISTL--KPEI-YRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDP-AIFL-DD 120 (225)
T ss_pred HHh----ccc-CCCCCeEEECCEEcCcC--CHHH-HHhccEEEecccccccc-cHHHHHHhHHhhcCCChHH-HHHH-HH
Confidence 999 998 78899988776543211 1112 33569999999776643 4433221111111111000 0010 12
Q ss_pred EEEEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHH
Q psy14062 233 LEIARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLV 306 (388)
Q Consensus 233 l~~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~v 306 (388)
+...++. ...+..+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.++.++...+++++
T Consensus 121 l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~ 194 (225)
T PRK10247 121 LERFALPDTILTKNIAELSGGEKQRISLIRNLQF------MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWV 194 (225)
T ss_pred HHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 2222322 23467789999999999999999999 99999999999999 667777877766533459999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14062 307 ETDLKALEPELRKAVNFLELENCVQ 331 (388)
Q Consensus 307 tH~l~~l~~~~d~~~~y~~~~~~~~ 331 (388)
||+++.++ .||++....+...+++
T Consensus 195 sh~~~~~~-~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 195 THDKDEIN-HADKVITLQPHAGEMQ 218 (225)
T ss_pred ECChHHHH-hCCEEEEEecccchHh
Confidence 99999986 5887765543333333
No 125
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.5e-29 Score=239.65 Aligned_cols=205 Identities=20% Similarity=0.255 Sum_probs=137.4
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|+... ++...+|+||||+|.+ |++++|+||||||||||+++|
T Consensus 2 i~~~~v~----~~y~~~~---~~~~~~l~~vsl~i~~----------------------Ge~v~i~G~nGsGKSTLl~~l 52 (288)
T PRK13643 2 IKFEKVN----YTYQPNS---PFASRALFDIDLEVKK----------------------GSYTALIGHTGSGKSTLLQHL 52 (288)
T ss_pred EEEEEEE----EEeCCCC---cccccceeeeEEEEcC----------------------CCEEEEECCCCChHHHHHHHH
Confidence 4556666 6786321 1111245699999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCc-cchhhhhccceeEecccC--CCCCcceEEEEEEeccccCCCCccccccCCc
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSD--QVGGVSRCSVAIHFAQIIDKPNEEYEIIPGT 231 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~-~~~~lr~~~i~~l~q~~~--~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~ 231 (388)
+ |++ ++.+|++.++|..+..... ......++.++++||++. .++ .++.+...+.....+............
T Consensus 53 ~----Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~ 126 (288)
T PRK13643 53 N----GLL-QPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAE 126 (288)
T ss_pred h----cCC-CCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHH
Confidence 9 998 7789998888765421111 111123356999999863 333 243322211111111111100000011
Q ss_pred eEEEEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 232 DLEIARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 232 ~l~~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
.+...++. ...++.+..|||||+||+.||++|+. +|++||||||+++| ..+...+.++++++. +|++
T Consensus 127 ~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~------~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~-til~ 199 (288)
T PRK13643 127 KLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAM------EPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQ-TVVL 199 (288)
T ss_pred HHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHh------CCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCC-EEEE
Confidence 22222332 23467889999999999999999999 99999999999999 667777877776555 5999
Q ss_pred HHHhHHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKAV 321 (388)
Q Consensus 306 vtH~l~~l~~~~d~~~ 321 (388)
+||+++.+.+.||++.
T Consensus 200 vtHd~~~~~~~~dri~ 215 (288)
T PRK13643 200 VTHLMDDVADYADYVY 215 (288)
T ss_pred EecCHHHHHHhCCEEE
Confidence 9999999999988763
No 126
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.1e-28 Score=234.79 Aligned_cols=202 Identities=20% Similarity=0.279 Sum_probs=143.1
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|++..++. +|||+|.+ |++++|+||||||||||+++
T Consensus 7 ~l~i~~l~----~~~~~~~~l~--------~isl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~ 52 (265)
T PRK10253 7 RLRGEQLT----LGYGKYTVAE--------NLTVEIPD----------------------GHFTAIIGPNGCGKSTLLRT 52 (265)
T ss_pred EEEEEEEE----EEECCEEEee--------ecceEECC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 56677777 7898777655 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEec-c---ccCCCCccccccC
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFA-Q---IIDKPNEEYEIIP 229 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~-~---~~~~~~~~~~~~~ 229 (388)
|+ |++ ++.+|++.++|..+.- ...... ...++|+||++..++..+..++..... . .............
T Consensus 53 i~----G~~-~~~~G~i~~~g~~~~~--~~~~~~-~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (265)
T PRK10253 53 LS----RLM-TPAHGHVWLDGEHIQH--YASKEV-ARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAV 124 (265)
T ss_pred Hc----CCC-CCCCcEEEECCEEhhh--CCHHHH-hhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHH
Confidence 99 998 7789998887654421 111222 346999999987776555443221110 0 0000000000000
Q ss_pred CceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHH
Q psy14062 230 GTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQ 304 (388)
Q Consensus 230 ~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii 304 (388)
...+...++....++.+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.++.++...+++
T Consensus 125 ~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~------~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tii 198 (265)
T PRK10253 125 TKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ------ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLA 198 (265)
T ss_pred HHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhc------CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 112222233334467889999999999999999999 99999999999999 6677778777664233599
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q psy14062 305 LVETDLKALEPELRKAVNF 323 (388)
Q Consensus 305 ~vtH~l~~l~~~~d~~~~y 323 (388)
++||+++.+.+.+|++..+
T Consensus 199 i~tH~~~~~~~~~d~i~~l 217 (265)
T PRK10253 199 AVLHDLNQACRYASHLIAL 217 (265)
T ss_pred EEeCCHHHHHHhCCEEEEE
Confidence 9999999999999977444
No 127
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.94 E-value=7.2e-29 Score=236.06 Aligned_cols=188 Identities=12% Similarity=0.194 Sum_probs=129.4
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|+|+||+|.+ |++++|+||||||||||+++|+ |++ ++.+|++.+.|..+....
T Consensus 27 l~~isl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l~----Gl~-~p~~G~i~~~g~~i~~~~ 79 (265)
T TIGR02769 27 LTNVSLSIEE----------------------GETVGLLGRSGCGKSTLARLLL----GLE-KPAQGTVSFRGQDLYQLD 79 (265)
T ss_pred eeCceeEEcC----------------------CCEEEEECCCCCCHHHHHHHHh----CCC-CCCCcEEEECCEEccccC
Confidence 4599999999 9999999999999999999999 998 778999888776543221
Q ss_pred ccchhhhhccceeEecccC--CCCCcceEEEEEE-eccccCCCC-ccccccCCceEEEEEEe-eeCCCCeeeeCCccccH
Q psy14062 182 YRASKIRANKLSVLMHKSD--QVGGVSRCSVAIH-FAQIIDKPN-EEYEIIPGTDLEIARTA-FYDNSSYYTLNGKKVHF 256 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~--~~~~~~~~eV~~~-~~~~~~~~~-~~~~~~~~~~l~~~r~~-~~~~~~~~~LSgGq~qr 256 (388)
.......++.+++++|.+. .++..++.++... ......... .....+. ..+...++. ...+..+..|||||+||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-~~l~~~gl~~~~~~~~~~~LSgGe~qr 158 (265)
T TIGR02769 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIA-ELLDMVGLRSEDADKLPRQLSGGQLQR 158 (265)
T ss_pred HHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHcCCChhhhhCChhhCCHHHHHH
Confidence 1111112356999999863 3344444332211 000001010 0000100 112222332 23456788999999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 257 KEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 257 ~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+.||++|+. +|++||||||+++| +.+...+.++.++...+|+++||+++.+...+|++.-.
T Consensus 159 v~laral~~------~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l 224 (265)
T TIGR02769 159 INIARALAV------KPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVM 224 (265)
T ss_pred HHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEE
Confidence 999999999 99999999999999 66777888877653345999999999999998876433
No 128
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4e-29 Score=233.84 Aligned_cols=200 Identities=16% Similarity=0.196 Sum_probs=140.1
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|+++.+++ ++||+|.+ |++++|+||||||||||+++
T Consensus 5 ~l~~~~l~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~ 50 (237)
T PRK11614 5 MLSFDKVS----AHYGKIQALH--------EVSLHINQ----------------------GEIVTLIGANGAGKTTLLGT 50 (237)
T ss_pred EEEEEeEE----EeeCCceeee--------eeEEEEcC----------------------CcEEEEECCCCCCHHHHHHH
Confidence 45566666 6787766655 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceE
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l 233 (388)
|+ |+. ++.+|++.+.|..+... .....+++.+++++|++..++..++.++....... ........... ..+
T Consensus 51 l~----G~~-~p~~G~i~~~g~~~~~~--~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~-~~l 121 (237)
T PRK11614 51 LC----GDP-RATSGRIVFDGKDITDW--QTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFF-AERDQFQERIK-WVY 121 (237)
T ss_pred Hc----CCC-CCCCceEEECCEecCCC--CHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhc-cChhHHHHHHH-HHH
Confidence 99 998 77899988877543211 11122345699999998877665554332111000 00000000000 011
Q ss_pred EEE-EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 234 EIA-RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 234 ~~~-r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
... ......+..+..|||||+||+.||++|+. +|+++||||||++| +.+...+.++++++. +++++|
T Consensus 122 ~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~------~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~-tiii~s 194 (237)
T PRK11614 122 ELFPRLHERRIQRAGTMSGGEQQMLAIGRALMS------QPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGM-TIFLVE 194 (237)
T ss_pred HHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHh------CCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCC-EEEEEe
Confidence 111 11122345778999999999999999999 99999999999999 667777877766554 599999
Q ss_pred HhHHHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAVNF 323 (388)
Q Consensus 308 H~l~~l~~~~d~~~~y 323 (388)
|+++++.+.+|++..+
T Consensus 195 H~~~~~~~~~d~i~~l 210 (237)
T PRK11614 195 QNANQALKLADRGYVL 210 (237)
T ss_pred CcHHHHHhhCCEEEEE
Confidence 9999999999887443
No 129
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.2e-28 Score=255.23 Aligned_cols=201 Identities=14% Similarity=0.153 Sum_probs=146.0
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|+++.+++ ||||+|.+ |++++|+||||||||||++
T Consensus 4 ~~l~~~~l~----~~~~~~~il~--------~vs~~i~~----------------------Ge~~~liG~nGsGKSTLl~ 49 (510)
T PRK09700 4 PYISMAGIG----KSFGPVHALK--------SVNLTVYP----------------------GEIHALLGENGAGKSTLMK 49 (510)
T ss_pred ceEEEeeeE----EEcCCeEEee--------eeeEEEcC----------------------CcEEEEECCCCCCHHHHHH
Confidence 356777777 7898777655 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEecc----ccCCC---Ccc-
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ----IIDKP---NEE- 224 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~----~~~~~---~~~- 224 (388)
+|+ |++ ++.+|++.+.|..+... .....+.+.++++||++..++..++.++...... ..+.. ...
T Consensus 50 ~i~----Gl~-~p~~G~i~~~g~~i~~~--~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 122 (510)
T PRK09700 50 VLS----GIH-EPTKGTITINNINYNKL--DHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREM 122 (510)
T ss_pred HHc----CCc-CCCccEEEECCEECCCC--CHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHH
Confidence 999 998 77899988877544211 1112233569999999877776666543321100 00100 000
Q ss_pred ccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 225 YEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 225 ~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
...+. ..+...++....++++..|||||+||+.||++|+. +|++|||||||++| ..+...+.++++++
T Consensus 123 ~~~~~-~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g 195 (510)
T PRK09700 123 RVRAA-MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLML------DAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEG 195 (510)
T ss_pred HHHHH-HHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 00111 12222233334467889999999999999999999 99999999999999 77788888887665
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
. +|+++||+++.+...||++..
T Consensus 196 ~-tiiivsHd~~~~~~~~d~v~~ 217 (510)
T PRK09700 196 T-AIVYISHKLAEIRRICDRYTV 217 (510)
T ss_pred C-EEEEEeCCHHHHHHhCCEEEE
Confidence 4 599999999999999987643
No 130
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=4.1e-28 Score=216.43 Aligned_cols=158 Identities=21% Similarity=0.323 Sum_probs=122.7
Q ss_pred EEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 77 i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.++. ++|++..++. ++||++.+ |++++|+||||||||||+++|+
T Consensus 3 ~~~l~----~~~~~~~~l~--------~~~~~i~~----------------------Ge~~~i~G~nGsGKStLl~~l~- 47 (173)
T cd03230 3 VRNLS----KRYGKKTALD--------DISLTVEK----------------------GEIYGLLGPNGAGKTTLIKIIL- 47 (173)
T ss_pred EEEEE----EEECCeeeee--------eeEEEEcC----------------------CcEEEEECCCCCCHHHHHHHHh-
Confidence 45555 6687655544 99999999 9999999999999999999999
Q ss_pred cccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEE
Q psy14062 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIA 236 (388)
Q Consensus 157 ~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (388)
|+. ++.+|++.+++..+... ... +++.+++++|++..++..+..++ +.
T Consensus 48 ---G~~-~~~~G~i~~~g~~~~~~---~~~-~~~~i~~~~q~~~~~~~~tv~~~----------------------~~-- 95 (173)
T cd03230 48 ---GLL-KPDSGEIKVLGKDIKKE---PEE-VKRRIGYLPEEPSLYENLTVREN----------------------LK-- 95 (173)
T ss_pred ---CCC-CCCCeEEEECCEEcccc---hHh-hhccEEEEecCCccccCCcHHHH----------------------hh--
Confidence 998 77899988877543211 112 23568999998655433222110 00
Q ss_pred EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHH
Q psy14062 237 RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLK 311 (388)
Q Consensus 237 r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~ 311 (388)
|||||+||+.||++|+. +|+++|+|||+++| +.+...+.++.+++. +++++||+.+
T Consensus 96 ------------LS~G~~qrv~laral~~------~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~-tiii~th~~~ 156 (173)
T cd03230 96 ------------LSGGMKQRLALAQALLH------DPELLILDEPTSGLDPESRREFWELLRELKKEGK-TILLSSHILE 156 (173)
T ss_pred ------------cCHHHHHHHHHHHHHHc------CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCC-EEEEECCCHH
Confidence 99999999999999999 99999999999999 677778887766643 5999999999
Q ss_pred HHHHHHHHH
Q psy14062 312 ALEPELRKA 320 (388)
Q Consensus 312 ~l~~~~d~~ 320 (388)
.+...+|++
T Consensus 157 ~~~~~~d~i 165 (173)
T cd03230 157 EAERLCDRV 165 (173)
T ss_pred HHHHhCCEE
Confidence 998888764
No 131
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.1e-29 Score=238.23 Aligned_cols=198 Identities=18% Similarity=0.202 Sum_probs=136.7
Q ss_pred EEEEEEEeeceEEec-CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 75 LIITKIVAFNFKSYA-GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 75 l~i~~l~~~~fksy~-~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
+.+.+++ ++|+ +..++ +||||+|.+ |++++|+||||||||||+++
T Consensus 2 l~~~~l~----~~~~~~~~~l--------~~vsl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~ 47 (274)
T PRK13644 2 IRLENVS----YSYPDGTPAL--------ENINLVIKK----------------------GEYIGIIGKNGSGKSTLALH 47 (274)
T ss_pred EEEEEEE----EEcCCCCcee--------eeeEEEEeC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 4555666 6785 34454 499999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCC-CCCcceEEEEEEeccccCCCCcc-ccccCCc
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQ-VGGVSRCSVAIHFAQIIDKPNEE-YEIIPGT 231 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~-~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~ 231 (388)
|+ |++ ++.+|++.+.|..+.. ......+.+.+++++|++.. ++..+..++..+.....+..... ...+. .
T Consensus 48 l~----Gl~-~p~~G~i~~~g~~~~~--~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~-~ 119 (274)
T PRK13644 48 LN----GLL-RPQKGKVLVSGIDTGD--FSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVD-R 119 (274)
T ss_pred Hh----cCC-CCCCceEEECCEECCc--cccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHH-H
Confidence 99 998 7789998887764321 11112233569999998752 33344433222111111111000 01111 1
Q ss_pred eEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHH
Q psy14062 232 DLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLV 306 (388)
Q Consensus 232 ~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~v 306 (388)
.+...++....+..+..|||||+||+.||++|+. +|+++|||||+++| ..+...+.++++++. +++++
T Consensus 120 ~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~------~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~-til~~ 192 (274)
T PRK13644 120 ALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTM------EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK-TIVYI 192 (274)
T ss_pred HHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCC-EEEEE
Confidence 1222233334567889999999999999999999 99999999999999 677778888776554 59999
Q ss_pred HHhHHHHHHHHHHHHH
Q psy14062 307 ETDLKALEPELRKAVN 322 (388)
Q Consensus 307 tH~l~~l~~~~d~~~~ 322 (388)
||+++.+. .+|++..
T Consensus 193 tH~~~~~~-~~d~v~~ 207 (274)
T PRK13644 193 THNLEELH-DADRIIV 207 (274)
T ss_pred ecCHHHHh-hCCEEEE
Confidence 99999985 5887633
No 132
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.3e-28 Score=230.99 Aligned_cols=196 Identities=15% Similarity=0.163 Sum_probs=138.0
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|+++.++. |+||+|.+ |++++|+||||||||||+++|
T Consensus 4 l~~~~l~----~~~~~~~~l~--------~vsl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l 49 (241)
T PRK14250 4 IEFKEVS----YSSFGKEILK--------DISVKFEG----------------------GAIYTIVGPSGAGKSTLIKLI 49 (241)
T ss_pred EEEEeEE----EEeCCeeeee--------eeeEEEcC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 4455555 5687766654 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEE
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLE 234 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~ 234 (388)
+ |++ ++.+|++.+.|..+. ....... ++.+++++|++..++ .+..++........+ ... .... ..+.
T Consensus 50 ~----Gl~-~p~~G~i~~~g~~i~--~~~~~~~-~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~-~~~~-~~l~ 116 (241)
T PRK14250 50 N----RLI-DPTEGSILIDGVDIK--TIDVIDL-RRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG--EKN-VDVE-YYLS 116 (241)
T ss_pred h----CCC-CCCCcEEEECCEEhh--hcChHHh-hhcEEEEecCchhch-hhHHHHHhcchhhcC--cHH-HHHH-HHHH
Confidence 9 998 778999888776543 1111222 346999999977664 343332211101101 000 0000 1122
Q ss_pred EEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 235 IARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 235 ~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH 308 (388)
..++. ...++.+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.+++++...+++++||
T Consensus 117 ~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH 190 (241)
T PRK14250 117 IVGLNKEYATRDVKNLSGGEAQRVSIARTLAN------NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITH 190 (241)
T ss_pred HcCCCHHHhhCCcccCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 22332 23456788999999999999999999 99999999999999 66777787776652335999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy14062 309 DLKALEPELRKAVNF 323 (388)
Q Consensus 309 ~l~~l~~~~d~~~~y 323 (388)
+++.+...+|++...
T Consensus 191 ~~~~~~~~~d~i~~l 205 (241)
T PRK14250 191 NMEQAKRIGDYTAFL 205 (241)
T ss_pred cHHHHHHhCCEEEEE
Confidence 999999998876444
No 133
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.1e-29 Score=244.18 Aligned_cols=203 Identities=17% Similarity=0.166 Sum_probs=138.8
Q ss_pred cEEEEEEEeeceEEec----CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhh
Q psy14062 74 RLIITKIVAFNFKSYA----GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSN 149 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~----~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKST 149 (388)
.+.+.+++ ++|. ...+ |+||||+|.+ |++++|+|||||||||
T Consensus 3 ~L~v~~l~----~~y~~~~~~~~~--------l~~vsl~i~~----------------------Ge~~~ivG~sGsGKST 48 (330)
T PRK15093 3 LLDIRNLT----IEFKTSDGWVKA--------VDRVSMTLTE----------------------GEIRGLVGESGSGKSL 48 (330)
T ss_pred eEEEeeeE----EEEeCCCCCEEE--------EeeeEEEECC----------------------CCEEEEECCCCCCHHH
Confidence 46667777 7783 2344 4599999999 9999999999999999
Q ss_pred HHhhhhhcccEEEcC---CCCCcceeehhhhhhcCcc-chhhhhccceeEecccCC--CCCcceEEEEEE-eccc-c-C-
Q psy14062 150 VIDSMLFRFNAIIGP---NGSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSDQ--VGGVSRCSVAIH-FAQI-I-D- 219 (388)
Q Consensus 150 Ll~~i~~~~ngIiGp---ngSGKs~i~da~i~vlg~~-~~~lr~~~i~~l~q~~~~--~~~~~~~eV~~~-~~~~-~-~- 219 (388)
|+++|+ |++.+ +.+|++.++|..+.-+... ....|++.++++||++.. .+..++.+.... +... . +
T Consensus 49 Ll~~i~----Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~ 124 (330)
T PRK15093 49 IAKAIC----GVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGR 124 (330)
T ss_pred HHHHHH----ccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhcccc
Confidence 999999 98843 4689988877654322211 122445679999999752 333333221110 0000 0 0
Q ss_pred --CC-CccccccCCceEEEEEEee---eCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHH
Q psy14062 220 --KP-NEEYEIIPGTDLEIARTAF---YDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVL 288 (388)
Q Consensus 220 --~~-~~~~~~~~~~~l~~~r~~~---~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i 288 (388)
.. ......+ ...+...++.. ..+..+..|||||+||+.||++|+. +|++||+||||++| .++
T Consensus 125 ~~~~~~~~~~~~-~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~------~P~llilDEPts~LD~~~~~~i 197 (330)
T PRK15093 125 WWQRFGWRKRRA-IELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALAN------QPRLLIADEPTNAMEPTTQAQI 197 (330)
T ss_pred ccccHHHHHHHH-HHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHC------CCCEEEEeCCCCcCCHHHHHHH
Confidence 00 0000000 01222223321 2356788999999999999999999 99999999999999 778
Q ss_pred HhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHH
Q psy14062 289 YGKYDEERTEKLTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 289 ~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
.+++++++++...+++++|||+..+.+++|++.
T Consensus 198 ~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~ 230 (330)
T PRK15093 198 FRLLTRLNQNNNTTILLISHDLQMLSQWADKIN 230 (330)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE
Confidence 888888877634469999999999999998763
No 134
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=6.4e-29 Score=235.66 Aligned_cols=187 Identities=21% Similarity=0.229 Sum_probs=136.1
Q ss_pred ccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEc-CC---CCCcceeehhh
Q psy14062 101 EVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIG-PN---GSGKSNVIDSM 176 (388)
Q Consensus 101 ~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiG-pn---gSGKs~i~da~ 176 (388)
||+||||+|.+ |++++|||.|||||||+.++|. +++. || .+|++.+.|.+
T Consensus 20 av~~vs~~i~~----------------------GE~lgiVGESGsGKS~~~~aim----~llp~~~~~i~~G~i~f~g~~ 73 (316)
T COG0444 20 AVDGVSFELKK----------------------GEILGIVGESGSGKSVLAKAIM----GLLPKPNARIVGGEILFDGKD 73 (316)
T ss_pred EEeceeEEEcC----------------------CcEEEEEcCCCCCHHHHHHHHH----hccCCCCCeEeeeEEEECCcc
Confidence 46699999999 9999999999999999999999 8873 22 36888888887
Q ss_pred hhhcCcc-chhhhhccceeEecccCC--CCCcceEE-EEEEeccccCCC--CccccccCCceEEEEEEe---eeCCCCee
Q psy14062 177 LFVFGYR-ASKIRANKLSVLMHKSDQ--VGGVSRCS-VAIHFAQIIDKP--NEEYEIIPGTDLEIARTA---FYDNSSYY 247 (388)
Q Consensus 177 i~vlg~~-~~~lr~~~i~~l~q~~~~--~~~~~~~e-V~~~~~~~~~~~--~~~~~~~~~~~l~~~r~~---~~~~~~~~ 247 (388)
++-+..+ ..++|+++|+++||+|.. .|-.+... +.-.+ ..+... ..+........+...++. ...+.+++
T Consensus 74 l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l-~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPh 152 (316)
T COG0444 74 LLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVL-RLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPH 152 (316)
T ss_pred cccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHH-HHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCc
Confidence 6655543 236789999999999642 22222110 00000 111110 100000001122222222 23467899
Q ss_pred eeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 248 TLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 248 ~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
+|||||+||+.||.+|+. +|++||.||||++| .+|++++++++++..+++++||||+..+.+.||++
T Consensus 153 elSGGMrQRV~IAmala~------~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri 224 (316)
T COG0444 153 ELSGGMRQRVMIAMALAL------NPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRV 224 (316)
T ss_pred ccCCcHHHHHHHHHHHhC------CCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceE
Confidence 999999999999999999 99999999999999 88999999999877777999999999999999975
No 135
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=9.3e-29 Score=233.54 Aligned_cols=202 Identities=15% Similarity=0.198 Sum_probs=139.4
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
|.+.+.+++ ++|+++.+++ ++||+|.+ |++++|+||||||||||++
T Consensus 5 ~~l~~~~l~----~~~~~~~il~--------~is~~i~~----------------------Ge~~~i~G~nGsGKSTLl~ 50 (253)
T PRK14242 5 PKMEARGLS----FFYGDFQALH--------DISLEFEQ----------------------NQVTALIGPSGCGKSTFLR 50 (253)
T ss_pred cEEEEeeeE----EEECCeeeec--------ceeEEEeC----------------------CCEEEEECCCCCCHHHHHH
Confidence 578888888 7898766654 99999999 9999999999999999999
Q ss_pred hhhhcccEEEc--C--CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCc-c-cc
Q psy14062 153 SMLFRFNAIIG--P--NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNE-E-YE 226 (388)
Q Consensus 153 ~i~~~~ngIiG--p--ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~-~-~~ 226 (388)
+|+ |+.+ | +.+|++.++|..+.-....... .++.+++++|++..++. ++.++..+.....+.... . ..
T Consensus 51 ~l~----Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~-~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~ 124 (253)
T PRK14242 51 CLN----RMNDLIPGARVEGEILLDGENIYDPHVDVVE-LRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAE 124 (253)
T ss_pred HHH----hhcccCCCCCCceEEEECCEEccccccCHHH-HhhcEEEEecCCCCCcC-cHHHHHHHHHHHcCCCCHHHHHH
Confidence 999 8864 2 4689988877544211011112 23469999999877653 444332211111111000 0 00
Q ss_pred ccCCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHH
Q psy14062 227 IIPGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERT 297 (388)
Q Consensus 227 ~~~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~ 297 (388)
.+. ..+...++ ....++.+..|||||+||+.||++|+. +|+++|||||+++| +.+.+.+.++++
T Consensus 125 ~~~-~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 197 (253)
T PRK14242 125 RVE-RSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAV------EPEVLLMDEPASALDPIATQKIEELIHELKA 197 (253)
T ss_pred HHH-HHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc
Confidence 000 01111111 112356788999999999999999999 99999999999999 667778877754
Q ss_pred HhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 298 EKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 298 e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+. +++++||+++.+.+.+|++...
T Consensus 198 -~~-tvii~tH~~~~~~~~~d~v~~l 221 (253)
T PRK14242 198 -RY-TIIIVTHNMQQAARVSDVTAFF 221 (253)
T ss_pred -CC-eEEEEEecHHHHHHhCCEEEEE
Confidence 43 6999999999999999876443
No 136
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.1e-28 Score=236.38 Aligned_cols=201 Identities=17% Similarity=0.170 Sum_probs=137.9
Q ss_pred cEEEEEEEeeceEEecC-ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSYAG-YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~-~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
++.+.+++ ++|++ ..++ +||||+|.+ |++++|+||||||||||++
T Consensus 3 ~l~~~~l~----~~~~~~~~~l--------~~vsl~i~~----------------------Ge~~~i~G~NGsGKSTLl~ 48 (277)
T PRK13652 3 LIETRDLC----YSYSGSKEAL--------NNINFIAPR----------------------NSRIAVIGPNGAGKSTLFR 48 (277)
T ss_pred eEEEEEEE----EEeCCCCcee--------eEeEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 35566666 77853 4454 499999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccC-CCCCcceEEEEEEeccccCCCCccccccCCc
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD-QVGGVSRCSVAIHFAQIIDKPNEEYEIIPGT 231 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~-~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~ 231 (388)
+|+ |++ ++.+|++.++|..+. .... ..+.+.+++++|++. .+...++.++..+.....+............
T Consensus 49 ~l~----Gl~-~p~~G~i~~~g~~~~--~~~~-~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 120 (277)
T PRK13652 49 HFN----GIL-KPTSGSVLIRGEPIT--KENI-REVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSS 120 (277)
T ss_pred HHh----cCC-CCCceEEEECCEECC--cCCH-HHHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHH
Confidence 999 998 778999888765432 1111 123356999999864 2223343322211111001111000000011
Q ss_pred eEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHH
Q psy14062 232 DLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLV 306 (388)
Q Consensus 232 ~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~v 306 (388)
.+...++....++.+..|||||+||+.||++|+. +|+++||||||++| ..+...+.++.++...+++++
T Consensus 121 ~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~------~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~ 194 (277)
T PRK13652 121 ALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAM------EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFS 194 (277)
T ss_pred HHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 2222233334567789999999999999999999 99999999999999 667778888776533459999
Q ss_pred HHhHHHHHHHHHHHHH
Q psy14062 307 ETDLKALEPELRKAVN 322 (388)
Q Consensus 307 tH~l~~l~~~~d~~~~ 322 (388)
||+++.+.+.||++..
T Consensus 195 tH~~~~~~~~~drv~~ 210 (277)
T PRK13652 195 THQLDLVPEMADYIYV 210 (277)
T ss_pred ecCHHHHHHhCCEEEE
Confidence 9999999999887633
No 137
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.1e-28 Score=233.46 Aligned_cols=203 Identities=16% Similarity=0.206 Sum_probs=141.3
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|+++.+|+ |+||+|.+ |++++|+||||||||||++
T Consensus 12 ~~l~i~nl~----~~~~~~~il~--------~is~~i~~----------------------Ge~~~l~G~nGsGKSTLl~ 57 (269)
T PRK14259 12 IIISLQNVT----ISYGTFEAVK--------NVFCDIPR----------------------GKVTALIGPSGCGKSTVLR 57 (269)
T ss_pred ceEEEEeEE----EEECCEEEEc--------ceEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 356777777 7898777655 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcC----CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccccc
Q psy14062 153 SMLFRFNAIIGP----NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEII 228 (388)
Q Consensus 153 ~i~~~~ngIiGp----ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~ 228 (388)
+|+ |++-| +.+|++.+.|..+.......... ++.++|++|++..++. ++.++........+.........
T Consensus 58 ~l~----Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~-~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~ 131 (269)
T PRK14259 58 SLN----RMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEV-RRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELV 131 (269)
T ss_pred HHh----ccccccCCCCCceEEEECCEEcccccCCHHHH-hhceEEEccCCccchh-hHHHHHhhhhhhcCCcHHHHHHH
Confidence 999 98732 57999888776543111111223 3469999999877653 54443322111111100000000
Q ss_pred CCceEEEEE----EeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 229 PGTDLEIAR----TAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 229 ~~~~l~~~r----~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
. ..+.... .....+.++..|||||+||+.||++|.. +|++||||||+++| +.+.+.+.++++ +
T Consensus 132 ~-~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~------~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~ 203 (269)
T PRK14259 132 E-RSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAI------EPEVILMDEPCSALDPISTLKIEETMHELKK-N 203 (269)
T ss_pred H-HHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhc------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C
Confidence 0 0111111 1123456788999999999999999999 99999999999999 667777877754 3
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKAVNFL 324 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~~~y~ 324 (388)
.+++++||+++.+...||++..+.
T Consensus 204 -~tiiivtH~~~~~~~~~d~i~~l~ 227 (269)
T PRK14259 204 -FTIVIVTHNMQQAVRVSDMTAFFN 227 (269)
T ss_pred -CEEEEEeCCHHHHHHhcCEEEEEe
Confidence 359999999999999999876554
No 138
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.94 E-value=8.1e-29 Score=233.87 Aligned_cols=200 Identities=14% Similarity=0.176 Sum_probs=139.2
Q ss_pred EEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 76 IITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 76 ~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.+.+++ ++|++..++. ||||+|.+ |++++|+||||||||||+++|+
T Consensus 2 ~~~~l~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l~ 47 (252)
T TIGR03005 2 RFSDVT----KRFGILTVLD--------GLNFSVAA----------------------GEKVALIGPSGSGKSTILRILM 47 (252)
T ss_pred EEEEEE----EEeCCeeEEe--------eeeEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh
Confidence 345555 6787766654 99999999 9999999999999999999999
Q ss_pred hcccEEEcCCCCCcceeehhhhhhcC----------ccchhhhhccceeEecccCCCCCcceEEEEEEec-cccCCCCcc
Q psy14062 156 FRFNAIIGPNGSGKSNVIDSMLFVFG----------YRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFA-QIIDKPNEE 224 (388)
Q Consensus 156 ~~~ngIiGpngSGKs~i~da~i~vlg----------~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~-~~~~~~~~~ 224 (388)
|++ ++.+|++.+.|..+.-.. .......++.+++++|++..++..+..++..... ...+.....
T Consensus 48 ----G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~ 122 (252)
T TIGR03005 48 ----TLE-PIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAE 122 (252)
T ss_pred ----CCC-CCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHH
Confidence 998 778999888776543211 0001122356999999988776666543322100 000100000
Q ss_pred c-cccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 225 Y-EIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 225 ~-~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
. ... ...+...++....+..+..|||||+||+.||++|+. +|+++|||||+++| ..+...+.++.++
T Consensus 123 ~~~~~-~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 195 (252)
T TIGR03005 123 AEKRA-MELLDMVGLADKADHMPAQLSGGQQQRVAIARALAM------RPKVMLFDEVTSALDPELVGEVLNVIRRLASE 195 (252)
T ss_pred HHHHH-HHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 0 000 011222222233456788999999999999999999 99999999999999 6677778777665
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
...+++++||+++.+...+|++.
T Consensus 196 ~~~tiiivsH~~~~~~~~~d~i~ 218 (252)
T TIGR03005 196 HDLTMLLVTHEMGFAREFADRVC 218 (252)
T ss_pred cCcEEEEEeCCHHHHHHhcCEEE
Confidence 33459999999999999888764
No 139
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.94 E-value=9.5e-29 Score=235.52 Aligned_cols=210 Identities=16% Similarity=0.110 Sum_probs=137.5
Q ss_pred CcEEEEEEEeeceEEecCceeecCC-CCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPF-NTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f-~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
+++.+.+++ ++|++...-... ...+|+||||+|.+ |++++|+||||||||||+
T Consensus 3 ~~l~~~~l~----~~~~~~~~~~~~~~~~~l~~vsl~i~~----------------------Ge~~~i~G~NGsGKSTLl 56 (267)
T PRK15112 3 TLLEVRNLS----KTFRYRTGWFRRQTVEAVKPLSFTLRE----------------------GQTLAIIGENGSGKSTLA 56 (267)
T ss_pred ceEEEeceE----EEecCCCCcccccccceeeeeeEEecC----------------------CCEEEEEcCCCCCHHHHH
Confidence 356677777 788631000000 01135599999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccC--CCCCcceEEEEEEecccc-CCCCccc-cc
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD--QVGGVSRCSVAIHFAQII-DKPNEEY-EI 227 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~--~~~~~~~~eV~~~~~~~~-~~~~~~~-~~ 227 (388)
++|+ |++ ++.+|++.+.|..+.. .....+.+.+++++|++. .++..++.++........ ....... ..
T Consensus 57 ~~l~----Gl~-~p~~G~i~~~g~~~~~---~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~ 128 (267)
T PRK15112 57 KMLA----GMI-EPTSGELLIDDHPLHF---GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQ 128 (267)
T ss_pred HHHh----CCC-CCCCCEEEECCEECCC---CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHH
Confidence 9999 998 7789998887764421 111233456999999864 233333222111100000 0000000 00
Q ss_pred cCCceEEEEEE-eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhh
Q psy14062 228 IPGTDLEIART-AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLT 301 (388)
Q Consensus 228 ~~~~~l~~~r~-~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~ 301 (388)
+ ...+...++ ....+..+..|||||+||+.||++|+. +|+++|||||+++| +.+.+.+.++.++...
T Consensus 129 ~-~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~ 201 (267)
T PRK15112 129 I-IETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALIL------RPKVIIADEALASLDMSMRSQLINLMLELQEKQGI 201 (267)
T ss_pred H-HHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHh------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCc
Confidence 0 011222222 122345678999999999999999999 99999999999999 6677788887765333
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q psy14062 302 RVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 302 ~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+++++||+++.+...||++..+
T Consensus 202 tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 202 SYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred EEEEEeCCHHHHHHhcCEEEEE
Confidence 5999999999999998876443
No 140
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.94 E-value=8.1e-29 Score=232.33 Aligned_cols=198 Identities=16% Similarity=0.151 Sum_probs=135.2
Q ss_pred EEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 76 IITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 76 ~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.+.+++ ++|+++.+|. |+||+|.+ |++++|+||||||||||+++|+
T Consensus 2 ~~~~l~----~~~~~~~~l~--------~isl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l~ 47 (243)
T TIGR01978 2 KIKDLH----VSVEDKEILK--------GVNLTVKK----------------------GEIHAIMGPNGSGKSTLSKTIA 47 (243)
T ss_pred eEeeEE----EEECCEEEEe--------ccceEEcC----------------------CCEEEEECCCCCCHHHHHHHHh
Confidence 345566 7798766655 99999999 9999999999999999999999
Q ss_pred hcccEEEc-CCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCC-------CCcc-cc
Q psy14062 156 FRFNAIIG-PNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK-------PNEE-YE 226 (388)
Q Consensus 156 ~~~ngIiG-pngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~-------~~~~-~~ 226 (388)
|+.. ++.+|++.+.+..+... .....+...+++++|++..++..+..++.......... .... ..
T Consensus 48 ----Gl~~~~~~~G~i~~~g~~~~~~--~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (243)
T TIGR01978 48 ----GHPSYEVTSGTILFKGQDLLEL--EPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLK 121 (243)
T ss_pred ----CCCCCCCCcceEEECCEecCCC--CHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHH
Confidence 8842 57799988877544211 11112223488999998877665544322111000000 0000 00
Q ss_pred ccCCceEEEEEEe-eeCCCCee-eeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 227 IIPGTDLEIARTA-FYDNSSYY-TLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 227 ~~~~~~l~~~r~~-~~~~~~~~-~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
... ..+...++. ...+..+. .|||||+||+.||++|+. +|+++||||||++| +.+...+.++++++
T Consensus 122 ~~~-~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 194 (243)
T TIGR01978 122 LLK-AKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALL------EPKLAILDEIDSGLDIDALKIVAEGINRLREPD 194 (243)
T ss_pred HHH-HHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhc------CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 000 112222222 12344555 599999999999999999 99999999999999 77777888776555
Q ss_pred hhHHHHHHHhHHHHHHH-HHHHH
Q psy14062 300 LTRVQLVETDLKALEPE-LRKAV 321 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~-~d~~~ 321 (388)
. +++++||+++.+... +|++.
T Consensus 195 ~-tvi~vsH~~~~~~~~~~d~i~ 216 (243)
T TIGR01978 195 R-SFLIITHYQRLLNYIKPDYVH 216 (243)
T ss_pred c-EEEEEEecHHHHHhhcCCeEE
Confidence 4 599999999999988 68764
No 141
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.1e-28 Score=236.69 Aligned_cols=209 Identities=16% Similarity=0.143 Sum_probs=138.8
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|++..- +....+|+||||+|.+ |++++|+||||||||||++
T Consensus 3 ~~l~~~~l~----~~~~~~~~--~~~~~vl~~vs~~i~~----------------------Ge~~~l~G~nGsGKSTLl~ 54 (280)
T PRK13633 3 EMIKCKNVS----YKYESNEE--STEKLALDDVNLEVKK----------------------GEFLVILGRNGSGKSTIAK 54 (280)
T ss_pred ceEEEeeeE----EEcCCCCC--CCCcceeeeeEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 466777777 78864210 0001135599999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCC-CCCcceEEEEEEeccccCCCCccccccCCc
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQ-VGGVSRCSVAIHFAQIIDKPNEEYEIIPGT 231 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~-~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~ 231 (388)
+|+ |++ ++.+|++.++|..+.. .......++.++++||++.. +...++.+...+.....+............
T Consensus 55 ~l~----Gl~-~~~~G~i~i~g~~i~~--~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~ 127 (280)
T PRK13633 55 HMN----ALL-IPSEGKVYVDGLDTSD--EENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDE 127 (280)
T ss_pred HHh----CCC-CCCCceEEECCEeccc--cccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHH
Confidence 999 998 7789998888765421 11111223569999998642 222233222211111111111100000011
Q ss_pred eEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHH
Q psy14062 232 DLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLV 306 (388)
Q Consensus 232 ~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~v 306 (388)
.+...++..+.++.+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.++.++...+++++
T Consensus 128 ~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~------~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillv 201 (280)
T PRK13633 128 SLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM------RPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILI 201 (280)
T ss_pred HHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 2222333344567889999999999999999999 99999999999999 777778888766533359999
Q ss_pred HHhHHHHHHHHHHHHHH
Q psy14062 307 ETDLKALEPELRKAVNF 323 (388)
Q Consensus 307 tH~l~~l~~~~d~~~~y 323 (388)
||+++.+.. +|++..+
T Consensus 202 tH~~~~~~~-~d~v~~l 217 (280)
T PRK13633 202 THYMEEAVE-ADRIIVM 217 (280)
T ss_pred ecChHHHhc-CCEEEEE
Confidence 999999876 8876433
No 142
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.5e-28 Score=242.88 Aligned_cols=189 Identities=12% Similarity=0.140 Sum_probs=138.0
Q ss_pred EEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC
Q psy14062 86 KSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN 165 (388)
Q Consensus 86 ksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn 165 (388)
|+|++... |+||+|.+ |++++|+|||||||||||++|+ |++ ++
T Consensus 8 k~~~~~~~----------~vsl~i~~----------------------Ge~~~l~G~nGsGKSTLl~~ia----Gl~-~p 50 (352)
T PRK11144 8 QQLGDLCL----------TVNLTLPA----------------------QGITAIFGRSGAGKTSLINAIS----GLT-RP 50 (352)
T ss_pred EEeCCEEE----------EEEEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh----CCC-CC
Confidence 88986432 89999999 9999999999999999999999 998 77
Q ss_pred CCCcceeehhhhhhcCcc-chhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCC
Q psy14062 166 GSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNS 244 (388)
Q Consensus 166 gSGKs~i~da~i~vlg~~-~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~ 244 (388)
.+|++.+.|..+.-.... ......+.++|+||++..++..++.++..+... ..... .+. ..+...++....++
T Consensus 51 ~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~--~~~~~---~~~-~~l~~~gl~~~~~~ 124 (352)
T PRK11144 51 QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA--KSMVA---QFD-KIVALLGIEPLLDR 124 (352)
T ss_pred CceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh--hhhHH---HHH-HHHHHcCCchhhhC
Confidence 899988877654311000 011123569999999988887776544321100 00000 000 12222233334567
Q ss_pred CeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHH
Q psy14062 245 SYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRK 319 (388)
Q Consensus 245 ~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~ 319 (388)
.+..|||||+||+.||++|+. +|+++|||||+++| +.+...++++.++...+++++||+++++...+|+
T Consensus 125 ~~~~LSgGq~qRvalaraL~~------~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~ 198 (352)
T PRK11144 125 YPGSLSGGEKQRVAIGRALLT------APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADR 198 (352)
T ss_pred CcccCCHHHHHHHHHHHHHHc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCE
Confidence 889999999999999999999 99999999999999 6677788877766334599999999999999987
Q ss_pred HHHH
Q psy14062 320 AVNF 323 (388)
Q Consensus 320 ~~~y 323 (388)
+...
T Consensus 199 i~~l 202 (352)
T PRK11144 199 VVVL 202 (352)
T ss_pred EEEE
Confidence 6433
No 143
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=9.6e-29 Score=234.27 Aligned_cols=202 Identities=16% Similarity=0.209 Sum_probs=138.7
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ +.|+++.+|. |+||+|.+ |++++|+||||||||||++
T Consensus 11 ~~l~~~~l~----~~~~~~~il~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~ 56 (258)
T PRK14268 11 PQIKVENLN----LWYGEKQALK--------NVSMQIPK----------------------NSVTALIGPSGCGKSTFIR 56 (258)
T ss_pred eeEEEeeeE----EEeCCeeeee--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 356666666 6788766655 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcC----CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cc
Q psy14062 153 SMLFRFNAIIGP----NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EI 227 (388)
Q Consensus 153 ~i~~~~ngIiGp----ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~ 227 (388)
+|+ |+..| +.+|++.+.|..+.-..... ..+++.++|++|++..++ .+..++..+.....+...... ..
T Consensus 57 ~i~----Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~-~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~ 130 (258)
T PRK14268 57 CLN----RMNDLIKNCRIEGKVSIEGEDIYEPDVDV-VELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGV 130 (258)
T ss_pred HHh----cCCCcccCCCcceEEEECCEEcccccchH-HHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHH
Confidence 999 98843 37999888775442111111 122356999999987665 554443221111111111000 00
Q ss_pred cCCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 228 IPGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 228 ~~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
+. ..+...++ ....+.++..|||||+||+.||++|+. +|+++||||||++| ..+...++++.+
T Consensus 131 ~~-~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~l~~- 202 (258)
T PRK14268 131 VE-NALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAV------KPKIILFDEPTSALDPISTARIEDLIMNLKK- 202 (258)
T ss_pred HH-HHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHc------CCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-
Confidence 00 01111111 122356788999999999999999999 99999999999999 667777877754
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+ .+++++||+++.+.+.||++...
T Consensus 203 ~-~tiiivsH~~~~~~~~~d~i~~l 226 (258)
T PRK14268 203 D-YTIVIVTHNMQQAARISDYTGFF 226 (258)
T ss_pred C-CEEEEEECCHHHHHHhCCEEEEE
Confidence 4 36999999999999998876433
No 144
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=8.8e-29 Score=236.72 Aligned_cols=202 Identities=17% Similarity=0.190 Sum_probs=138.7
Q ss_pred EEEEEEEeeceEEecC-ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 75 LIITKIVAFNFKSYAG-YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 75 l~i~~l~~~~fksy~~-~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
+.+.+++ ++|++ ..++ +||||+|.+ |++++|+||||||||||+++
T Consensus 2 l~~~~l~----~~~~~~~~~l--------~~vsl~i~~----------------------Ge~~~l~G~nGsGKSTLl~~ 47 (275)
T PRK13639 2 LETRDLK----YSYPDGTEAL--------KGINFKAEK----------------------GEMVALLGPNGAGKSTLFLH 47 (275)
T ss_pred EEEEEEE----EEeCCCCeee--------eeeEEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 4456666 67863 4454 499999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccC-CCCCcceEEEEEEeccccCCCCccccccCCce
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD-QVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~-~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~ 232 (388)
|+ |++ ++.+|++.+.|..+.. .......+.+.++|++|++. .+...++.++..+.....+.............
T Consensus 48 i~----Gl~-~~~~G~i~~~g~~~~~-~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~ 121 (275)
T PRK13639 48 FN----GIL-KPTSGEVLIKGEPIKY-DKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEA 121 (275)
T ss_pred Hh----CCC-CCCccEEEECCEECcc-ccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99 998 7889999888765421 11111123456999999863 22233443332211000011000000000112
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++..+.++.+..|||||+||+.+|++|+. +|+++|||||+++| ..+...+.++.+++. +++++|
T Consensus 122 l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~------~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~-til~vt 194 (275)
T PRK13639 122 LKAVGMEGFENKPPHHLSGGQKKRVAIAGILAM------KPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGI-TIIIST 194 (275)
T ss_pred HHHCCCchhhcCChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCC-EEEEEe
Confidence 222333344567889999999999999999999 99999999999999 667778887766544 599999
Q ss_pred HhHHHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAVNF 323 (388)
Q Consensus 308 H~l~~l~~~~d~~~~y 323 (388)
|+++.+.++||++..+
T Consensus 195 H~~~~~~~~~d~i~~l 210 (275)
T PRK13639 195 HDVDLVPVYADKVYVM 210 (275)
T ss_pred cCHHHHHHhCCEEEEE
Confidence 9999999999876433
No 145
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4e-29 Score=220.59 Aligned_cols=202 Identities=22% Similarity=0.281 Sum_probs=150.6
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ |+|+++.+++ +||++|++ |++++|||||||||||||.++
T Consensus 2 I~i~nv~----K~y~~~~vl~--------~isl~i~~----------------------g~iTs~IGPNGAGKSTLLS~~ 47 (252)
T COG4604 2 ITIENVS----KSYGTKVVLD--------DVSLDIPK----------------------GGITSIIGPNGAGKSTLLSMM 47 (252)
T ss_pred eeehhhh----HhhCCEEeec--------cceeeecC----------------------CceeEEECCCCccHHHHHHHH
Confidence 4566677 9999999876 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccc-c--CCCCccccccCCc
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQI-I--DKPNEEYEIIPGT 231 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~-~--~~~~~~~~~~~~~ 231 (388)
+ .++ +.++|++.+.+..+. +.+ .+.-+++++.+-|.......+++.+... |.++ | +....+....-..
T Consensus 48 s----RL~-~~d~G~i~i~g~~~~--~~~-s~~LAk~lSILkQ~N~i~~rlTV~dLv~-FGRfPYSqGRlt~eD~~~I~~ 118 (252)
T COG4604 48 S----RLL-KKDSGEITIDGLELT--STP-SKELAKKLSILKQENHINSRLTVRDLVG-FGRFPYSQGRLTKEDRRIINE 118 (252)
T ss_pred H----Hhc-cccCceEEEeeeecc--cCC-hHHHHHHHHHHHhhchhhheeEHHHHhh-cCCCcccCCCCchHHHHHHHH
Confidence 9 788 778999988887653 222 2333456888877766555555554332 2221 1 1111111111112
Q ss_pred eEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHH
Q psy14062 232 DLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLV 306 (388)
Q Consensus 232 ~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~v 306 (388)
.++...+....++...+|||||+||.-||.+|++ +.++++||||...| -+++..++.+.++-..++++|
T Consensus 119 aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQ------dTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviV 192 (252)
T COG4604 119 AIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQ------DTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVV 192 (252)
T ss_pred HHHHhcccchHHHhHHhcccchhhhhhhheeeec------cCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 3334444455677888999999999999999999 99999999999999 667778888888877779999
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q psy14062 307 ETDLKALEPELRKAVNFLE 325 (388)
Q Consensus 307 tH~l~~l~~~~d~~~~y~~ 325 (388)
-||++.+..++|.++.+..
T Consensus 193 lHDINfAS~YsD~IVAlK~ 211 (252)
T COG4604 193 LHDINFASCYSDHIVALKN 211 (252)
T ss_pred EecccHHHhhhhheeeecC
Confidence 9999999999998876643
No 146
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=1.6e-28 Score=210.43 Aligned_cols=198 Identities=17% Similarity=0.238 Sum_probs=150.1
Q ss_pred EEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhccc
Q psy14062 80 IVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFN 159 (388)
Q Consensus 80 l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~n 159 (388)
+...|| +||..++|. ||+|+.+. |+.++++||||+|||||+|.++
T Consensus 5 v~~in~-~yg~~q~lf--------di~l~~~~----------------------getlvllgpsgagkssllr~ln---- 49 (242)
T COG4161 5 LNGINC-FYGAHQALF--------DITLDCPE----------------------GETLVLLGPSGAGKSSLLRVLN---- 49 (242)
T ss_pred Eccccc-ccccchhee--------eeeecCCC----------------------CCEEEEECCCCCchHHHHHHHH----
Confidence 444454 599988875 99999999 9999999999999999999998
Q ss_pred EEEcCCCCCcceeehhhhhhcCccc-----hhhhhccceeEecccCCCCCcceEEEEEE-eccccCCCCccccccCCceE
Q psy14062 160 AIIGPNGSGKSNVIDSMLFVFGYRA-----SKIRANKLSVLMHKSDQVGGVSRCSVAIH-FAQIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 160 gIiGpngSGKs~i~da~i~vlg~~~-----~~lr~~~i~~l~q~~~~~~~~~~~eV~~~-~~~~~~~~~~~~~~~~~~~l 233 (388)
-+. -+.||...|.+.. |.+.... ..+| +++|+|||..++.|.+++.++.+. ..+..+.+++.........+
T Consensus 50 lle-~p~sg~l~ia~~~-fd~s~~~~~k~i~~lr-~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ell 126 (242)
T COG4161 50 LLE-MPRSGTLNIAGNH-FDFSKTPSDKAIRDLR-RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLL 126 (242)
T ss_pred HHh-CCCCCeEEecccc-cccccCccHHHHHHHH-HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHH
Confidence 555 5679998887653 3333322 1234 569999999999999888765432 11222332222111111234
Q ss_pred EEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 234 ~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH 308 (388)
...|+....++.+..|||||+||++|||+|+. .|.+|++||||++| .++...++++...+.+ -++|||
T Consensus 127 krlrl~~~adr~plhlsggqqqrvaiaralmm------kpqvllfdeptaaldpeitaqvv~iikel~~tgit-qvivth 199 (242)
T COG4161 127 KRLRLKPYADRYPLHLSGGQQQRVAIARALMM------EPQVLLFDEPTAALDPEITAQIVSIIKELAETGIT-QVIVTH 199 (242)
T ss_pred HHhccccccccCceecccchhhhHHHHHHHhc------CCcEEeecCcccccCHHHHHHHHHHHHHHHhcCce-EEEEEe
Confidence 44566667788999999999999999999999 99999999999999 7788899999888875 788999
Q ss_pred hHHHHHHHHHHHHH
Q psy14062 309 DLKALEPELRKAVN 322 (388)
Q Consensus 309 ~l~~l~~~~d~~~~ 322 (388)
+.+.+++.+.++.-
T Consensus 200 ev~va~k~as~vvy 213 (242)
T COG4161 200 EVEVARKTASRVVY 213 (242)
T ss_pred ehhHHHhhhhheEe
Confidence 99999998887653
No 147
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=1.5e-28 Score=225.02 Aligned_cols=189 Identities=13% Similarity=0.136 Sum_probs=135.4
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|+++.++. ||||+|.+ |++++|+||||||||||+++|
T Consensus 2 l~~~~l~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~l 47 (204)
T PRK13538 2 LEARNLA----CERDERILFS--------GLSFTLNA----------------------GELVQIEGPNGAGKTSLLRIL 47 (204)
T ss_pred eEEEEEE----EEECCEEEEe--------cceEEECC----------------------CcEEEEECCCCCCHHHHHHHH
Confidence 4566666 7898776655 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEE
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLE 234 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~ 234 (388)
+ |+. ++.+|++.+.|..+... .... .+.+++++|.+..++..+..++...+....+.. . ...+. ..+.
T Consensus 48 ~----G~~-~p~~G~v~~~g~~~~~~---~~~~-~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~-~-~~~~~-~~l~ 115 (204)
T PRK13538 48 A----GLA-RPDAGEVLWQGEPIRRQ---RDEY-HQDLLYLGHQPGIKTELTALENLRFYQRLHGPG-D-DEALW-EALA 115 (204)
T ss_pred h----CCC-CCCCcEEEECCEEcccc---hHHh-hhheEEeCCccccCcCCcHHHHHHHHHHhcCcc-H-HHHHH-HHHH
Confidence 9 998 78899988877544211 1112 345899999877666665544332221111110 0 00111 1222
Q ss_pred EEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHh
Q psy14062 235 IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETD 309 (388)
Q Consensus 235 ~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~ 309 (388)
..++....+.++..|||||+||+.+|++|+. +|+++|+|||+++| +.+...+.++++++. +++++||+
T Consensus 116 ~~gl~~~~~~~~~~LS~G~~qrl~la~al~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-tiii~sh~ 188 (204)
T PRK13538 116 QVGLAGFEDVPVRQLSAGQQRRVALARLWLT------RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGG-MVILTTHQ 188 (204)
T ss_pred HcCCHHHhhCChhhcCHHHHHHHHHHHHHhc------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCC-EEEEEecC
Confidence 2233333467788999999999999999999 99999999999999 667777877765544 59999999
Q ss_pred HHHHHHH
Q psy14062 310 LKALEPE 316 (388)
Q Consensus 310 l~~l~~~ 316 (388)
+..+...
T Consensus 189 ~~~i~~~ 195 (204)
T PRK13538 189 DLPVASD 195 (204)
T ss_pred hhhhccC
Confidence 9988764
No 148
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.5e-28 Score=234.77 Aligned_cols=201 Identities=16% Similarity=0.188 Sum_probs=139.6
Q ss_pred CCCcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 71 TGPRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 71 ~~~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
..+++.+.+++ ++|++..+|+ ++||+|.+ |++++|+||||||||||
T Consensus 36 ~~~~l~i~~l~----~~~~~~~il~--------~is~~i~~----------------------Ge~~~I~G~nGsGKSTL 81 (285)
T PRK14254 36 GETVIEARDLN----VFYGDEQALD--------DVSMDIPE----------------------NQVTAMIGPSGCGKSTF 81 (285)
T ss_pred CCceEEEEEEE----EEECCEeeEe--------eeEEEEcC----------------------CCEEEEECCCCCCHHHH
Confidence 34567777777 7898766655 99999999 99999999999999999
Q ss_pred HhhhhhcccEEEcC----CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccc
Q psy14062 151 IDSMLFRFNAIIGP----NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYE 226 (388)
Q Consensus 151 l~~i~~~~ngIiGp----ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~ 226 (388)
+++|+ |+..| +.+|++.+.|..+.-........ ++.+++++|++..++. ++.++........+.......
T Consensus 82 l~~l~----Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~-~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~ 155 (285)
T PRK14254 82 LRCIN----RMNDLIDAARVEGELTFRGKNVYDADVDPVAL-RRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDE 155 (285)
T ss_pred HHHHh----ccCCcccCCCCceEEEECCEEccccccchHhh-hccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHH
Confidence 99999 98842 57999888775443111111122 3569999999876653 443322111111111100000
Q ss_pred ccCCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHH
Q psy14062 227 IIPGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERT 297 (388)
Q Consensus 227 ~~~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~ 297 (388)
.+. ..+...++ ....+..+..|||||+||+.||++|+. +|++||||||+++| +.+...+.++++
T Consensus 156 ~~~-~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~------~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~ 228 (285)
T PRK14254 156 RVE-ESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAP------DPEVILMDEPASALDPVATSKIEDLIEELAE 228 (285)
T ss_pred HHH-HHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc
Confidence 000 01111111 112356788999999999999999999 99999999999999 667778887765
Q ss_pred HhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 298 EKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 298 e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
+ . +++++||+++.+...+|++
T Consensus 229 ~-~-tiii~tH~~~~i~~~~dri 249 (285)
T PRK14254 229 E-Y-TVVIVTHNMQQAARISDKT 249 (285)
T ss_pred C-C-EEEEEeCCHHHHHhhcCEE
Confidence 4 3 5999999999999999984
No 149
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.94 E-value=1.6e-28 Score=224.39 Aligned_cols=189 Identities=15% Similarity=0.132 Sum_probs=137.2
Q ss_pred EEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 76 IITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 76 ~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.+.+++ ++|+++.+++ ++||+|.+ |++++|+||||||||||+++|+
T Consensus 2 ~i~~l~----~~~~~~~~l~--------~isl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l~ 47 (201)
T cd03231 2 EADELT----CERDGRALFS--------GLSFTLAA----------------------GEALQVTGPNGSGKTTLLRILA 47 (201)
T ss_pred EEEEEE----EEeCCceeec--------cceEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh
Confidence 455666 7788776655 99999999 9999999999999999999999
Q ss_pred hcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEE
Q psy14062 156 FRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEI 235 (388)
Q Consensus 156 ~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~ 235 (388)
|+. ++.+|++.+.+..+.. . ....++.+++++|.+..++..+..++...+.... ... ... ..+..
T Consensus 48 ----G~~-~~~~G~i~~~g~~~~~---~-~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~---~~~-~~l~~ 112 (201)
T cd03231 48 ----GLS-PPLAGRVLLNGGPLDF---Q-RDSIARGLLYLGHAPGIKTTLSVLENLRFWHADH--SDE---QVE-EALAR 112 (201)
T ss_pred ----CCC-CCCCcEEEECCEeccc---c-cHHhhhheEEeccccccCCCcCHHHHHHhhcccc--cHH---HHH-HHHHH
Confidence 998 7889998887754321 1 1123356999999877666566544332221100 000 000 11122
Q ss_pred EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhH
Q psy14062 236 ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDL 310 (388)
Q Consensus 236 ~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l 310 (388)
.++....+.++..|||||+||+.+|++|+. +|+++|||||+++| +.+.+.+.++++++. +++++||+.
T Consensus 113 ~~l~~~~~~~~~~LS~G~~qrl~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~-tiii~sH~~ 185 (201)
T cd03231 113 VGLNGFEDRPVAQLSAGQQRRVALARLLLS------GRPLWILDEPTTALDKAGVARFAEAMAGHCARGG-MVVLTTHQD 185 (201)
T ss_pred cCChhhhcCchhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEecCc
Confidence 222233456788999999999999999999 99999999999999 677778877766555 499999998
Q ss_pred HHHHHHHHHH
Q psy14062 311 KALEPELRKA 320 (388)
Q Consensus 311 ~~l~~~~d~~ 320 (388)
..+..+++++
T Consensus 186 ~~~~~~~~~~ 195 (201)
T cd03231 186 LGLSEAGARE 195 (201)
T ss_pred hhhhhcccee
Confidence 8888777765
No 150
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.8e-28 Score=233.58 Aligned_cols=203 Identities=16% Similarity=0.176 Sum_probs=140.5
Q ss_pred CCCcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 71 TGPRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 71 ~~~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
+.+.+.+.+++ ++|+++.+|. |+||+|.+ |++++|+||||||||||
T Consensus 16 ~~~~l~~~nl~----~~~~~~~il~--------~isl~i~~----------------------Ge~~~i~G~nGsGKSTL 61 (267)
T PRK14235 16 TEIKMRARDVS----VFYGEKQALF--------DVDLDIPE----------------------KTVTAFIGPSGCGKSTF 61 (267)
T ss_pred CCceEEEEeEE----EEECCEEEEE--------EEEEEEcC----------------------CCEEEEECCCCCCHHHH
Confidence 33567777887 7898776655 99999999 99999999999999999
Q ss_pred HhhhhhcccEEEcC----CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCC--CCcc
Q psy14062 151 IDSMLFRFNAIIGP----NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK--PNEE 224 (388)
Q Consensus 151 l~~i~~~~ngIiGp----ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~--~~~~ 224 (388)
+++|+ |++.| +.+|++.++|..+........ .+++.+++++|++..++. +..++..+.....+. ....
T Consensus 62 l~~l~----Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~-~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~ 135 (267)
T PRK14235 62 LRCLN----RMNDTIDGCRVTGKITLDGEDIYDPRLDVV-ELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAE 135 (267)
T ss_pred HHHHH----hhcccccCCCCceEEEECCEECcccccchH-HHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHH
Confidence 99999 98843 479998887754421111111 223569999999877653 443322211111110 0000
Q ss_pred -ccccCCceEEEEEEe----eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHH
Q psy14062 225 -YEIIPGTDLEIARTA----FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDE 294 (388)
Q Consensus 225 -~~~~~~~~l~~~r~~----~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~e 294 (388)
...+. ..+...++. ...+..+..|||||+||+.||++|+. +|++||||||+++| ..+...+.+
T Consensus 136 ~~~~~~-~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~------~p~lllLDEPt~~LD~~~~~~l~~~L~~ 208 (267)
T PRK14235 136 LDEIVE-TSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAV------SPEVILMDEPCSALDPIATAKVEELIDE 208 (267)
T ss_pred HHHHHH-HHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHc------CCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 00000 111111221 12356788999999999999999999 99999999999999 667778877
Q ss_pred HHHHhhhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 295 ERTEKLTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 295 l~~e~~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
+.+ +. +++++||+++.+...+|++..
T Consensus 209 l~~-~~-tiiivtH~~~~~~~~~d~v~~ 234 (267)
T PRK14235 209 LRQ-NY-TIVIVTHSMQQAARVSQRTAF 234 (267)
T ss_pred Hhc-CC-eEEEEEcCHHHHHhhCCEEEE
Confidence 754 33 699999999999999887643
No 151
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.94 E-value=2.2e-28 Score=231.53 Aligned_cols=199 Identities=18% Similarity=0.257 Sum_probs=140.9
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
|.+.+++ ++|+++.++. |+||+|.+ |++++|+||||||||||+++|
T Consensus 2 l~~~~l~----~~~~~~~il~--------~is~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~i 47 (256)
T TIGR03873 2 LRLSRVS----WSAGGRLIVD--------GVDVTAPP----------------------GSLTGLLGPNGSGKSTLLRLL 47 (256)
T ss_pred ceEEeEE----EEECCEEEEe--------eeeEEEcC----------------------CcEEEEECCCCCCHHHHHHHH
Confidence 3456666 6788777755 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEec----cccCCCCcc-ccccC
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFA----QIIDKPNEE-YEIIP 229 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~----~~~~~~~~~-~~~~~ 229 (388)
+ |++ ++.+|++.++|..+.- ... ..+++.++|++|++..++..+..++..... ......... ...+.
T Consensus 48 ~----G~~-~~~~G~i~~~g~~~~~--~~~-~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 119 (256)
T TIGR03873 48 A----GAL-RPDAGTVDLAGVDLHG--LSR-RARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVD 119 (256)
T ss_pred c----CCC-CCCCCEEEECCEEccc--CCH-HHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHH
Confidence 9 998 7789998887754421 111 122346899999876555555443321110 000000000 00011
Q ss_pred CceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHH
Q psy14062 230 GTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQ 304 (388)
Q Consensus 230 ~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii 304 (388)
..+...++....+..+..|||||+||+.+|++|+. +|+++|||||+++| ..+...+.++++++. +|+
T Consensus 120 -~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-tii 191 (256)
T TIGR03873 120 -RALARTELSHLADRDMSTLSGGERQRVHVARALAQ------EPKLLLLDEPTNHLDVRAQLETLALVRELAATGV-TVV 191 (256)
T ss_pred -HHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc------CCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCC-EEE
Confidence 12222233334567889999999999999999999 99999999999999 667778887765554 599
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q psy14062 305 LVETDLKALEPELRKAVNF 323 (388)
Q Consensus 305 ~vtH~l~~l~~~~d~~~~y 323 (388)
++||+++.+.+.+|++...
T Consensus 192 i~sH~~~~~~~~~d~i~~l 210 (256)
T TIGR03873 192 AALHDLNLAASYCDHVVVL 210 (256)
T ss_pred EEeCCHHHHHHhCCEEEEE
Confidence 9999999999999876443
No 152
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.94 E-value=1.8e-27 Score=210.48 Aligned_cols=146 Identities=23% Similarity=0.349 Sum_probs=114.9
Q ss_pred EEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 76 IITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 76 ~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.+.+++ ++|++..++. ++||+|.+ |++++|+||||||||||+++|+
T Consensus 2 ~~~~l~----~~~~~~~vl~--------~i~~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~i~ 47 (163)
T cd03216 2 ELRGIT----KRFGGVKALD--------GVSLSVRR----------------------GEVHALLGENGAGKSTLMKILS 47 (163)
T ss_pred EEEEEE----EEECCeEEEe--------eeEEEEeC----------------------CCEEEEECCCCCCHHHHHHHHh
Confidence 345555 6798776655 99999999 9999999999999999999999
Q ss_pred hcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEE
Q psy14062 156 FRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEI 235 (388)
Q Consensus 156 ~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~ 235 (388)
|++ ++.+|++.+.+..+.. ......+.+.+++++|
T Consensus 48 ----G~~-~~~~G~v~~~g~~~~~--~~~~~~~~~~i~~~~q-------------------------------------- 82 (163)
T cd03216 48 ----GLY-KPDSGEILVDGKEVSF--ASPRDARRAGIAMVYQ-------------------------------------- 82 (163)
T ss_pred ----CCC-CCCCeEEEECCEECCc--CCHHHHHhcCeEEEEe--------------------------------------
Confidence 998 7789997776543211 0111112223444443
Q ss_pred EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhH
Q psy14062 236 ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDL 310 (388)
Q Consensus 236 ~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l 310 (388)
|||||+||+.+|++|.. +|+++|+|||+++| +.+...++++.+++. +++++||++
T Consensus 83 -------------LS~G~~qrl~laral~~------~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~-tiii~sh~~ 142 (163)
T cd03216 83 -------------LSVGERQMVEIARALAR------NARLLILDEPTAALTPAEVERLFKVIRRLRAQGV-AVIFISHRL 142 (163)
T ss_pred -------------cCHHHHHHHHHHHHHhc------CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 99999999999999999 99999999999999 667778877765544 599999999
Q ss_pred HHHHHHHHHH
Q psy14062 311 KALEPELRKA 320 (388)
Q Consensus 311 ~~l~~~~d~~ 320 (388)
+.+...++++
T Consensus 143 ~~~~~~~d~~ 152 (163)
T cd03216 143 DEVFEIADRV 152 (163)
T ss_pred HHHHHhCCEE
Confidence 9998888765
No 153
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.94 E-value=5.6e-29 Score=225.16 Aligned_cols=175 Identities=15% Similarity=0.172 Sum_probs=119.8
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|++|||+|.+ |++++|+||||||||||+++|+ |++ ++.+|++.+.+..+....
T Consensus 8 l~~vsl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~i~----G~~-~~~~G~i~~~g~~~~~~~ 60 (190)
T TIGR01166 8 LKGLNFAAER----------------------GEVLALLGANGAGKSTLLLHLN----GLL-RPQSGAVLIDGEPLDYSR 60 (190)
T ss_pred ecceeEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh----CCC-CCCceeEEECCEEccccc
Confidence 4599999999 9999999999999999999999 998 778999888776542111
Q ss_pred ccchhhhhccceeEecccC-CCCCcceEEEEEEeccccCCCCccc-cccCCceEEEEEEeeeCCCCeeeeCCccccHHHH
Q psy14062 182 YRASKIRANKLSVLMHKSD-QVGGVSRCSVAIHFAQIIDKPNEEY-EIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEV 259 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~-~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~I 259 (388)
...... ++.+++++|++. .....++.++..+.....+...... ..+. ..+...++....++.+..|||||+||+.+
T Consensus 61 ~~~~~~-~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~-~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 138 (190)
T TIGR01166 61 KGLLER-RQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVR-EALTAVGASGLRERPTHCLSGGEKKRVAI 138 (190)
T ss_pred cchHHH-HhhEEEEecChhhccccccHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHcCchhhhhCChhhCCHHHHHHHHH
Confidence 111122 346999999863 2223343332221111111111100 0001 12222233334567788999999999999
Q ss_pred HHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHH
Q psy14062 260 AKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKA 312 (388)
Q Consensus 260 a~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~ 312 (388)
|++|+. +|+++|||||+++| +.+...+.++++++. +++++||+++.
T Consensus 139 aral~~------~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~-tili~sH~~~~ 189 (190)
T TIGR01166 139 AGAVAM------RPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGM-TVVISTHDVDL 189 (190)
T ss_pred HHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCC-EEEEEeecccc
Confidence 999999 99999999999999 777778887766554 59999999764
No 154
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.94 E-value=1.1e-28 Score=228.77 Aligned_cols=191 Identities=17% Similarity=0.203 Sum_probs=138.7
Q ss_pred EEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 76 IITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 76 ~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.+.+++ ++|+++.++. ++||++.+ |++++|+||||||||||+++|+
T Consensus 2 ~l~~v~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l~ 47 (223)
T TIGR03740 2 ETKNLS----KRFGKQTAVN--------NISLTVPK----------------------NSVYGLLGPNGAGKSTLLKMIT 47 (223)
T ss_pred EEEeEE----EEECCEEEEe--------eeEEEEcC----------------------CcEEEEECCCCCCHHHHHHHHh
Confidence 345555 6788766655 99999999 9999999999999999999999
Q ss_pred hcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEE
Q psy14062 156 FRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEI 235 (388)
Q Consensus 156 ~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~ 235 (388)
|++ ++.+|++.+.+..+. ....+.++++||.+..++..+..++...+....+..... . ...+..
T Consensus 48 ----G~~-~~~~G~i~~~~~~~~-------~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~---~-~~~l~~ 111 (223)
T TIGR03740 48 ----GIL-RPTSGEIIFDGHPWT-------RKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSR---I-DEVLNI 111 (223)
T ss_pred ----CCC-CCCceEEEECCEecc-------ccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHH---H-HHHHHH
Confidence 998 788999887764321 111236899999887766655544322111111111100 0 011222
Q ss_pred EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhH
Q psy14062 236 ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDL 310 (388)
Q Consensus 236 ~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l 310 (388)
.++..+.+..+..|||||+||+.+|++|+. +|+++|+|||+++| +.+...+.++++++. +++++||++
T Consensus 112 ~~l~~~~~~~~~~LS~G~~~rv~laral~~------~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~-tiii~sH~~ 184 (223)
T TIGR03740 112 VDLTNTGKKKAKQFSLGMKQRLGIAIALLN------HPKLLILDEPTNGLDPIGIQELRELIRSFPEQGI-TVILSSHIL 184 (223)
T ss_pred cCCcHHHhhhHhhCCHHHHHHHHHHHHHhc------CCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence 233334466788999999999999999999 99999999999999 677778887765554 499999999
Q ss_pred HHHHHHHHHHHHH
Q psy14062 311 KALEPELRKAVNF 323 (388)
Q Consensus 311 ~~l~~~~d~~~~y 323 (388)
+.+.+.+|++...
T Consensus 185 ~~~~~~~d~i~~l 197 (223)
T TIGR03740 185 SEVQQLADHIGII 197 (223)
T ss_pred HHHHHhcCEEEEE
Confidence 9999999876444
No 155
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.9e-28 Score=234.39 Aligned_cols=222 Identities=17% Similarity=0.219 Sum_probs=147.5
Q ss_pred CcccccccCCCCCCCCCCCCCCcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhccc
Q psy14062 52 TYVGEVYIPPIAPVCFADPTGPRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTN 131 (388)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~ 131 (388)
+...++|.|+.+..... +..+.+.+.++. ++|++..++. |+||+|.+
T Consensus 18 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~l~----~~~~~~~il~--------~vsl~i~~-------------------- 64 (286)
T PRK14275 18 TATRDIYLPPERKKVSG-GGKPHVVAKNFS----IYYGEFEAVK--------KVNADILS-------------------- 64 (286)
T ss_pred ccccceeccccccccCC-CCceEEEEeeeE----EEECCEEEEe--------eeEEEEcC--------------------
Confidence 33456787764322222 233456666666 6788766654 99999999
Q ss_pred CCCcEEEEEcCCCCChhhHHhhhhhcccEEEc--C--CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcce
Q psy14062 132 RYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIG--P--NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSR 207 (388)
Q Consensus 132 ~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiG--p--ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~ 207 (388)
|++++|+||||||||||+++|+ |+.- | +.+|++.++|..+...... ...+++.++|++|++..++. +.
T Consensus 65 --Ge~~~l~G~nGsGKSTLl~~L~----Gl~~~~p~~~~~G~I~~~g~~i~~~~~~-~~~~~~~i~~v~q~~~l~~~-tv 136 (286)
T PRK14275 65 --KYVTAIIGPSGCGKSTFLRAIN----RMNDLIPSCHTTGALMFDGEDIYGKFTD-EVLLRKKIGMVFQKPNPFPK-SI 136 (286)
T ss_pred --CCEEEEECCCCCCHHHHHHHHh----cccccCCCCCCceEEEECCEEhhhcccc-hHHhhhcEEEECCCCCCCcc-CH
Confidence 9999999999999999999999 9752 3 3799988887654321111 11234569999999876653 44
Q ss_pred EEEEEEeccccCCCC-cc-ccccCCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccc
Q psy14062 208 CSVAIHFAQIIDKPN-EE-YEIIPGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEP 281 (388)
Q Consensus 208 ~eV~~~~~~~~~~~~-~~-~~~~~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP 281 (388)
.++..+.....+... .. ..... ..+...++ ....+..+..|||||+||+.||++|+. +|++||||||
T Consensus 137 ~enl~~~~~~~~~~~~~~~~~~~~-~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~------~p~lllLDEP 209 (286)
T PRK14275 137 FDNIAYGPRLHGINDKKQLEEIVE-KSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAV------EPEILLLDEP 209 (286)
T ss_pred HHHHHhHHHhcCCCcHHHHHHHHH-HHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCC
Confidence 433221111111100 00 00000 01111111 123356788999999999999999999 9999999999
Q ss_pred hhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 282 IAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 282 ~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+++| +.+...+.++.. + .+|+++||+++.+...+|++...
T Consensus 210 t~gLD~~~~~~l~~~L~~~~~-~-~tvIivsH~~~~~~~~~d~i~~L 254 (286)
T PRK14275 210 TSALDPKATAKIEDLIQELRG-S-YTIMIVTHNMQQASRVSDYTMFF 254 (286)
T ss_pred CccCCHHHHHHHHHHHHHHhc-C-CeEEEEeCCHHHHHHhCCEEEEE
Confidence 9999 666677777654 3 35999999999999999876433
No 156
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.6e-28 Score=231.84 Aligned_cols=201 Identities=13% Similarity=0.164 Sum_probs=139.2
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|++..+++ |+||+|.+ |++++|+||||||||||+++
T Consensus 4 ~l~~~~l~----~~~~~~~~l~--------~is~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~ 49 (253)
T PRK14267 4 AIETVNLR----VYYGSNHVIK--------GVDLKIPQ----------------------NGVFALMGPSGCGKSTLLRT 49 (253)
T ss_pred eEEEEeEE----EEeCCeeeee--------cceEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 45666666 7798766654 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCC----CCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCC--CCccc-c
Q psy14062 154 MLFRFNAIIGPN----GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK--PNEEY-E 226 (388)
Q Consensus 154 i~~~~ngIiGpn----gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~--~~~~~-~ 226 (388)
|+ |++-|+ .+|++.++|..+.-........ ++.+++++|++..++..++.++........+. ..... .
T Consensus 50 l~----G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~-~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 124 (253)
T PRK14267 50 FN----RLLELNEEARVEGEVRLFGRNIYSPDVDPIEV-RREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDE 124 (253)
T ss_pred Hh----ccCCcccCCCCceEEEECCEEccccccChHHH-hhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHH
Confidence 99 998332 4999888776543101111222 34699999998877766655433211111110 00000 0
Q ss_pred ccCCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHH
Q psy14062 227 IIPGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERT 297 (388)
Q Consensus 227 ~~~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~ 297 (388)
.+. ..+...++ ....+..+..|||||+||+.||++|+. +|+++|+|||+++| +.+...+.++.+
T Consensus 125 ~~~-~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 197 (253)
T PRK14267 125 RVE-WALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAM------KPKILLMDEPTANIDPVGTAKIEELLFELKK 197 (253)
T ss_pred HHH-HHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhc------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhh
Confidence 000 01111111 112356788999999999999999999 99999999999999 667778877754
Q ss_pred HhhhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 298 EKLTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 298 e~~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
+ .+++++||+++.+...||++..
T Consensus 198 -~-~tiii~sH~~~~~~~~~d~i~~ 220 (253)
T PRK14267 198 -E-YTIVLVTHSPAQAARVSDYVAF 220 (253)
T ss_pred -C-CEEEEEECCHHHHHhhCCEEEE
Confidence 3 3699999999999999987643
No 157
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.5e-28 Score=227.74 Aligned_cols=196 Identities=14% Similarity=0.156 Sum_probs=138.7
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|++... +|||+|.+ |++++|+||||||||||+++|
T Consensus 2 l~~~~l~----~~~~~~~~----------~is~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~l 45 (232)
T PRK10771 2 LKLTDIT----WLYHHLPM----------RFDLTVER----------------------GERVAILGPSGAGKSTLLNLI 45 (232)
T ss_pred eEEEEEE----EEECCccc----------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 4556666 67875321 89999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEE-EeccccCCCCccccccCCceE
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAI-HFAQIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~-~~~~~~~~~~~~~~~~~~~~l 233 (388)
+ |+. ++.+|++.++|..+... . . ....+++++|++..++..+..++.. .+.............+ ...+
T Consensus 46 ~----Gl~-~~~~G~i~~~g~~~~~~--~--~-~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-~~~l 114 (232)
T PRK10771 46 A----GFL-TPASGSLTLNGQDHTTT--P--P-SRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKL-HAIA 114 (232)
T ss_pred h----CCC-CCCCceEEECCeecCcC--C--h-hhccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHH-HHHH
Confidence 9 998 77799988877644211 1 1 1246999999988777666554322 1110000000000001 1122
Q ss_pred EEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 234 ~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH 308 (388)
...++....++.+..|||||+||+.+|++|+. +|+++|||||+++| +.+...+.++.++...+++++||
T Consensus 115 ~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH 188 (232)
T PRK10771 115 RQMGIEDLLARLPGQLSGGQRQRVALARCLVR------EQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSH 188 (232)
T ss_pred HHcCcHHHHhCCcccCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 22333334567888999999999999999999 99999999999999 66777887776553335999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy14062 309 DLKALEPELRKAVNF 323 (388)
Q Consensus 309 ~l~~l~~~~d~~~~y 323 (388)
+++.+.+.+|++..+
T Consensus 189 ~~~~~~~~~d~i~~l 203 (232)
T PRK10771 189 SLEDAARIAPRSLVV 203 (232)
T ss_pred CHHHHHHhCCEEEEE
Confidence 999999998876443
No 158
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3e-28 Score=251.61 Aligned_cols=201 Identities=17% Similarity=0.171 Sum_probs=144.7
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
|++.+.+++ ++|+++.+++ ||||+|.+ |++++|+||||||||||++
T Consensus 3 ~~l~~~~l~----~~~~~~~il~--------~isl~i~~----------------------Ge~~~l~G~nGsGKSTLl~ 48 (501)
T PRK11288 3 PYLSFDGIG----KTFPGVKALD--------DISFDCRA----------------------GQVHALMGENGAGKSTLLK 48 (501)
T ss_pred ceEEEeeeE----EEECCEEEEe--------eeeEEEeC----------------------CcEEEEECCCCCCHHHHHH
Confidence 356777777 7898776655 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEec--cccCC-CCcc-cccc
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFA--QIIDK-PNEE-YEII 228 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~--~~~~~-~~~~-~~~~ 228 (388)
+|+ |++ ++.+|++.+.|..+... .....+++.+++++|++..++..++.++..+.. ...+. .... ...+
T Consensus 49 ~l~----Gl~-~p~~G~I~~~g~~i~~~--~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 121 (501)
T PRK11288 49 ILS----GNY-QPDAGSILIDGQEMRFA--STTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEA 121 (501)
T ss_pred HHh----CCC-CCCCCEEEECCEECCCC--CHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHH
Confidence 999 998 78899988877544211 111223456999999987777666554332210 00010 0000 0011
Q ss_pred CCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHH
Q psy14062 229 PGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRV 303 (388)
Q Consensus 229 ~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~i 303 (388)
. ..+...++....++.+..|||||+||+.||++|+. +|+++||||||++| +.+.+.+.++++++. ++
T Consensus 122 ~-~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~-ti 193 (501)
T PRK11288 122 R-EQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALAR------NARVIAFDEPTSSLSAREIEQLFRVIRELRAEGR-VI 193 (501)
T ss_pred H-HHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHh------CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCC-EE
Confidence 0 12222233233467788999999999999999999 99999999999999 677778888766554 59
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q psy14062 304 QLVETDLKALEPELRKAVN 322 (388)
Q Consensus 304 i~vtH~l~~l~~~~d~~~~ 322 (388)
+++||+++.+...||++..
T Consensus 194 iiitHd~~~~~~~~d~i~~ 212 (501)
T PRK11288 194 LYVSHRMEEIFALCDAITV 212 (501)
T ss_pred EEEeCCHHHHHHhCCEEEE
Confidence 9999999999999987643
No 159
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.93 E-value=2e-28 Score=242.20 Aligned_cols=193 Identities=15% Similarity=0.162 Sum_probs=139.0
Q ss_pred EEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC
Q psy14062 86 KSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN 165 (388)
Q Consensus 86 ksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn 165 (388)
|+|++.. + ++||+|.+ |++++|+|||||||||||++|+ |++ ++
T Consensus 7 ~~~~~~~---------~-~isl~i~~----------------------Gei~~l~G~nGsGKSTLl~~ia----Gl~-~p 49 (354)
T TIGR02142 7 KRLGDFS---------L-DADFTLPG----------------------QGVTAIFGRSGSGKTTLIRLIA----GLT-RP 49 (354)
T ss_pred EEECCEE---------E-EEEEEECC----------------------CCEEEEECCCCCCHHHHHHHHh----CCC-CC
Confidence 7787643 2 89999999 9999999999999999999999 998 77
Q ss_pred CCCcceeehhhhhhcCcc-chhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCC
Q psy14062 166 GSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNS 244 (388)
Q Consensus 166 gSGKs~i~da~i~vlg~~-~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~ 244 (388)
.+|++.++|..+...... ......+.++++||++..++.+++.++..+...... .......+ ...+...++....++
T Consensus 50 ~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~-~~~~~~~~-~~~l~~~gL~~~~~~ 127 (354)
T TIGR02142 50 DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRAR-PSERRISF-ERVIELLGIGHLLGR 127 (354)
T ss_pred CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhccC-hhHHHHHH-HHHHHHcCChhHhcC
Confidence 899998887654321100 011123569999999988887776654322111111 00000001 112222333344567
Q ss_pred CeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHH
Q psy14062 245 SYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRK 319 (388)
Q Consensus 245 ~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~ 319 (388)
.+..|||||+||+.||++|+. +|++||||||+++| +.+...+.++.++...+++++||+++++...+|+
T Consensus 128 ~~~~LSgGqkqRvalAraL~~------~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~ 201 (354)
T TIGR02142 128 LPGRLSGGEKQRVAIGRALLS------SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADR 201 (354)
T ss_pred ChhhCCHHHHHHHHHHHHHHc------CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 889999999999999999999 99999999999999 7777888887766334599999999999999887
Q ss_pred HHHH
Q psy14062 320 AVNF 323 (388)
Q Consensus 320 ~~~y 323 (388)
+...
T Consensus 202 i~~l 205 (354)
T TIGR02142 202 VVVL 205 (354)
T ss_pred EEEE
Confidence 6433
No 160
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.93 E-value=2.8e-28 Score=231.00 Aligned_cols=204 Identities=15% Similarity=0.128 Sum_probs=137.5
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|+++.++. ++||+|.+ |++++|+||||||||||+++
T Consensus 6 ~l~~~~l~----~~~~~~~il~--------~is~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~ 51 (258)
T PRK11701 6 LLSVRGLT----KLYGPRKGCR--------DVSFDLYP----------------------GEVLGIVGESGSGKTTLLNA 51 (258)
T ss_pred eEEEeeeE----EEcCCceeee--------eeeEEEeC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 56666666 7788766654 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhh-----hhhcCccc-hhhhhccceeEecccC--CCCCcceEEEEEEeccccCC-C-Cc
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSM-----LFVFGYRA-SKIRANKLSVLMHKSD--QVGGVSRCSVAIHFAQIIDK-P-NE 223 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~-----i~vlg~~~-~~lr~~~i~~l~q~~~--~~~~~~~~eV~~~~~~~~~~-~-~~ 223 (388)
|+ |++ ++.+|++.+.+.. +.-..... ...+...++|++|++. .++..+..+........... . ..
T Consensus 52 l~----Gl~-~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 126 (258)
T PRK11701 52 LS----ARL-APDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGD 126 (258)
T ss_pred Hh----CCC-CCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHH
Confidence 99 998 7789999888764 32111100 1123456999999864 22222221111000000000 0 00
Q ss_pred cccccCCceEEEEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHH
Q psy14062 224 EYEIIPGTDLEIARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERT 297 (388)
Q Consensus 224 ~~~~~~~~~l~~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~ 297 (388)
..... ...+...+.. ...+..+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.++.+
T Consensus 127 ~~~~~-~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 199 (258)
T PRK11701 127 IRATA-GDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVT------HPRLVFMDEPTGGLDVSVQARLLDLLRGLVR 199 (258)
T ss_pred HHHHH-HHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 00000 0112222222 13457789999999999999999999 99999999999999 666777777766
Q ss_pred HhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 298 EKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 298 e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+...+++++||+++.+...+|++..+
T Consensus 200 ~~~~tii~isH~~~~~~~~~d~i~~l 225 (258)
T PRK11701 200 ELGLAVVIVTHDLAVARLLAHRLLVM 225 (258)
T ss_pred hcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 53345999999999999999876433
No 161
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.1e-28 Score=231.06 Aligned_cols=200 Identities=16% Similarity=0.191 Sum_probs=137.7
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.++. ++|++..+|+ |+||+|.+ |++++|+||||||||||+++
T Consensus 13 ~l~~~~l~----~~~~~~~il~--------~isl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~ 58 (260)
T PRK10744 13 KIQVRNLN----FYYGKFHALK--------NINLDIAK----------------------NQVTAFIGPSGCGKSTLLRT 58 (260)
T ss_pred eEEEEEEE----EEeCCeEEee--------ceeEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 56666776 7798766654 99999999 99999999999999999999
Q ss_pred hhhcccEEEcC----CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEecccc-CCCCccc-cc
Q psy14062 154 MLFRFNAIIGP----NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQII-DKPNEEY-EI 227 (388)
Q Consensus 154 i~~~~ngIiGp----ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~-~~~~~~~-~~ 227 (388)
|+ |++.| +.+|++.++|..+.......... ++.++++||++..++ .+..++........ ....... ..
T Consensus 59 l~----Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~-~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~ 132 (260)
T PRK10744 59 FN----RMYELYPEQRAEGEILLDGENILTPKQDIALL-RAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDER 132 (260)
T ss_pred Hh----cccccCCCCCcceEEEECCEEccccccchHHH-hcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHH
Confidence 99 99842 36899888776543111111123 356999999987665 44433322111111 0010000 00
Q ss_pred cCCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 228 IPGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 228 ~~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
+. ..+...++ ....+..+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.++++
T Consensus 133 ~~-~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~- 204 (260)
T PRK10744 133 VE-WALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAI------RPEVLLLDEPCSALDPISTGRIEELITELKQ- 204 (260)
T ss_pred HH-HHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHC------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-
Confidence 00 11112121 112356788999999999999999999 99999999999999 667777777753
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
+. +++++||+++.+...+|++..
T Consensus 205 ~~-tiii~sH~~~~~~~~~d~i~~ 227 (260)
T PRK10744 205 DY-TVVIVTHNMQQAARCSDYTAF 227 (260)
T ss_pred CC-eEEEEeCCHHHHHHhCCEEEE
Confidence 33 599999999999999887643
No 162
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2e-28 Score=258.87 Aligned_cols=213 Identities=12% Similarity=0.103 Sum_probs=144.6
Q ss_pred CcEEEEEEEeeceEEecCcee-ecCC--CCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVT-LGPF--NTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSN 149 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~-l~~f--~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKST 149 (388)
+++.+.+++ ++|+...- +... ...+|+||||+|.+ |++++|+|||||||||
T Consensus 312 ~~L~~~~l~----~~y~~~~~~~~~~~~~~~~l~~vs~~i~~----------------------Ge~~~lvG~nGsGKST 365 (623)
T PRK10261 312 PILQVRNLV----TRFPLRSGLLNRVTREVHAVEKVSFDLWP----------------------GETLSLVGESGSGKST 365 (623)
T ss_pred ceEEEeeeE----EEEcCCCccccccCCceEEEeeeEeEEcC----------------------CCEEEEECCCCCCHHH
Confidence 467777777 77852100 0000 01245699999999 9999999999999999
Q ss_pred HHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEeccc--CCCCCcceEEEEEEeccccCC-CCcc-c
Q psy14062 150 VIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKS--DQVGGVSRCSVAIHFAQIIDK-PNEE-Y 225 (388)
Q Consensus 150 Ll~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~--~~~~~~~~~eV~~~~~~~~~~-~~~~-~ 225 (388)
|+++|+ |++ ++.+|++.+.|..+.-........++++++|+||++ .+++..++.++........+. .... .
T Consensus 366 Llk~i~----Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~ 440 (623)
T PRK10261 366 TGRALL----RLV-ESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAA 440 (623)
T ss_pred HHHHHH----cCC-CCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHH
Confidence 999999 998 778999988776543211111111235699999986 355655554432211111111 0000 0
Q ss_pred cccCCceEEEEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 226 EIIPGTDLEIARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 226 ~~~~~~~l~~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
..+. ..+...++. ...++++..|||||+||+.||++|+. +|++||+||||++| ..+..++.+++++.
T Consensus 441 ~~~~-~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~------~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~ 513 (623)
T PRK10261 441 ARVA-WLLERVGLLPEHAWRYPHEFSGGQRQRICIARALAL------NPKVIIADEAVSALDVSIRGQIINLLLDLQRDF 513 (623)
T ss_pred HHHH-HHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 1111 122223332 23467889999999999999999999 99999999999999 77888888887763
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
..+|+++|||++.+...||++.-.
T Consensus 514 g~tvi~isHdl~~v~~~~dri~vl 537 (623)
T PRK10261 514 GIAYLFISHDMAVVERISHRVAVM 537 (623)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 345999999999999999876443
No 163
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.3e-28 Score=231.63 Aligned_cols=203 Identities=13% Similarity=0.185 Sum_probs=140.4
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.+++ ++|++..+|. +|||+|.+ |++++|+||||||||||+++
T Consensus 4 ~l~i~~v~----~~~~~~~~l~--------~isl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~ 49 (258)
T PRK14241 4 RIDVKDLN----IYYGSFHAVE--------DVNLNIEP----------------------RSVTAFIGPSGCGKSTVLRT 49 (258)
T ss_pred cEEEeeEE----EEECCEeeee--------eeeEEEcC----------------------CcEEEEECCCCCCHHHHHHH
Confidence 46667777 7898776654 99999999 99999999999999999999
Q ss_pred hhhcccEEEcC----CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCC-CCcccccc
Q psy14062 154 MLFRFNAIIGP----NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK-PNEEYEII 228 (388)
Q Consensus 154 i~~~~ngIiGp----ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~-~~~~~~~~ 228 (388)
|+ |++-| +.+|++.++|..+......... .++.+++++|++..++..++.++........+. ........
T Consensus 50 la----Gl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~-~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~ 124 (258)
T PRK14241 50 LN----RMHEVIPGARVEGEVLLDGEDLYGPGVDPVA-VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDEL 124 (258)
T ss_pred Hh----ccCCcccCCCcceEEEECCEeccccccChHH-HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99 98733 2599988877644211111112 235699999998777666654432211111110 00000000
Q ss_pred CCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 229 PGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 229 ~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
....+...++ ....+..+..|||||+||+.||++|.. +|+++|||||+++| ..+...+.++++ +
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~ 197 (258)
T PRK14241 125 VEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAV------EPDVLLMDEPCSALDPISTLAIEDLINELKQ-D 197 (258)
T ss_pred HHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C
Confidence 0001111111 123456788999999999999999999 99999999999999 667777777754 3
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
. +++++||+++.+.+.+|++..+
T Consensus 198 ~-tviivsH~~~~~~~~~d~i~~l 220 (258)
T PRK14241 198 Y-TIVIVTHNMQQAARVSDQTAFF 220 (258)
T ss_pred C-EEEEEecCHHHHHHhCCEEEEE
Confidence 3 5999999999999999987544
No 164
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.93 E-value=1.5e-28 Score=227.41 Aligned_cols=200 Identities=14% Similarity=0.135 Sum_probs=137.2
Q ss_pred EEEEEEEeeceEEecC----ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 75 LIITKIVAFNFKSYAG----YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 75 l~i~~l~~~~fksy~~----~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
+.+.+++ ++|++ ..++ ++|||++.+ |++++|+||||||||||
T Consensus 2 l~~~~l~----~~~~~~~~~~~il--------~~vs~~i~~----------------------G~~~~I~G~nGsGKStL 47 (220)
T TIGR02982 2 ISIRNLN----HYYGHGSLRKQVL--------FDINLEINP----------------------GEIVILTGPSGSGKTTL 47 (220)
T ss_pred EEEEEEE----EEccCCCcceeEE--------eeeEEEEcC----------------------CCEEEEECCCCCCHHHH
Confidence 3455565 56764 3454 499999999 99999999999999999
Q ss_pred HhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCC-CCccccccC
Q psy14062 151 IDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK-PNEEYEIIP 229 (388)
Q Consensus 151 l~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~-~~~~~~~~~ 229 (388)
+++|+ |++ ++.+|++.+.|..+.-.........++.+++++|++..++..+..++.......... .........
T Consensus 48 l~~l~----G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~ 122 (220)
T TIGR02982 48 LTLIG----GLR-SVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERA 122 (220)
T ss_pred HHHHh----CCC-CCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHH
Confidence 99999 988 778999888776543211111112345699999998877655655433221111110 000000000
Q ss_pred CceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHH
Q psy14062 230 GTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQ 304 (388)
Q Consensus 230 ~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii 304 (388)
...+...++....+..+..||+||+||+.+|++|+. +|+++|||||+++| +.+...+++++++...+++
T Consensus 123 ~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~------~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 196 (220)
T TIGR02982 123 RAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVH------RPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTIL 196 (220)
T ss_pred HHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 112222233334466788999999999999999999 99999999999999 6677788887765334699
Q ss_pred HHHHhHHHHHHHHHHH
Q psy14062 305 LVETDLKALEPELRKA 320 (388)
Q Consensus 305 ~vtH~l~~l~~~~d~~ 320 (388)
++||+++. .+.+|++
T Consensus 197 ~~sh~~~~-~~~~d~v 211 (220)
T TIGR02982 197 IVTHDNRI-LDVADRI 211 (220)
T ss_pred EEeCCHHH-HhhCCEE
Confidence 99999974 4677654
No 165
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3e-28 Score=230.22 Aligned_cols=200 Identities=14% Similarity=0.163 Sum_probs=137.5
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|++..+++ ||||+|.+ |++++|+||||||||||+++
T Consensus 7 ~l~~~~l~----~~~~~~~il~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~ 52 (254)
T PRK14273 7 IIETENLN----LFYTDFKALN--------NINIKILK----------------------NSITALIGPSGCGKSTFLRT 52 (254)
T ss_pred eEEEeeeE----EEeCCceeec--------ceeeEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 56677777 7798766654 99999999 99999999999999999999
Q ss_pred hhhcccEEEcC----CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCC-CCcc-ccc
Q psy14062 154 MLFRFNAIIGP----NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK-PNEE-YEI 227 (388)
Q Consensus 154 i~~~~ngIiGp----ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~-~~~~-~~~ 227 (388)
|+ |++-| +.+|++.+.|..+...... ....++.++|++|++..++ .++.++........+. .... ...
T Consensus 53 l~----Gl~~~~~~~~~~G~i~~~g~~i~~~~~~-~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~ 126 (254)
T PRK14273 53 LN----RMNDLVEGIKIEGNVIYEGKNIYSNNFD-ILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEI 126 (254)
T ss_pred Hh----ccccCCcCCCCceEEEECCEeccccccc-HHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99 99843 2589988877544211111 1122346999999977663 4544432211111110 0000 000
Q ss_pred cCCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 228 IPGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 228 ~~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
+. ..+...++ ....+..+..|||||+||+.||++|.. +|+++|||||+++| +.+...+.++++
T Consensus 127 ~~-~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~- 198 (254)
T PRK14273 127 VE-QSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAI------EPNVILMDEPTSALDPISTGKIEELIINLKE- 198 (254)
T ss_pred HH-HHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHc------CCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-
Confidence 00 01111111 112356788999999999999999999 99999999999999 677778888754
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
+ .+++++||+++.+.+.+|++..
T Consensus 199 ~-~tvii~sH~~~~~~~~~d~i~~ 221 (254)
T PRK14273 199 S-YTIIIVTHNMQQAGRISDRTAF 221 (254)
T ss_pred C-CEEEEEeCCHHHHHHhCCEEEE
Confidence 4 3599999999999999887643
No 166
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=1.2e-27 Score=236.40 Aligned_cols=199 Identities=19% Similarity=0.208 Sum_probs=154.6
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+.+.+.+++ |.|++.++.+ +|||+|.+ |++.||+|.||||||||++
T Consensus 3 ~~l~~~~it----K~f~~~~And--------~V~l~v~~----------------------GeIHaLLGENGAGKSTLm~ 48 (501)
T COG3845 3 PALEMRGIT----KRFPGVVAND--------DVSLSVKK----------------------GEIHALLGENGAGKSTLMK 48 (501)
T ss_pred ceEEEeccE----EEcCCEEecC--------ceeeeecC----------------------CcEEEEeccCCCCHHHHHH
Confidence 467788888 9999877755 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEecc-ccC-CCC--cccccc
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ-IID-KPN--EEYEII 228 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~-~~~-~~~--~~~~~~ 228 (388)
+|. |++ .|++|++.|+|..+.+.+ +....+..||+|+|++.+++.+|++++.+.-.. ... .-+ .....+
T Consensus 49 iL~----G~~-~P~~GeI~v~G~~v~~~s--P~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i 121 (501)
T COG3845 49 ILF----GLY-QPDSGEIRVDGKEVRIKS--PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARI 121 (501)
T ss_pred HHh----Ccc-cCCcceEEECCEEeccCC--HHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHH
Confidence 999 999 778999988887765433 234455679999999999999999886653211 000 000 000000
Q ss_pred CCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHH
Q psy14062 229 PGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRV 303 (388)
Q Consensus 229 ~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~i 303 (388)
. ......++....+..+..||=|++||++|-++|.. ++++|||||||+-| +++...++.+++++.+ |
T Consensus 122 ~-~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr------~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~t-I 193 (501)
T COG3845 122 K-ELSERYGLPVDPDAKVADLSVGEQQRVEILKALYR------GARLLILDEPTAVLTPQEADELFEILRRLAAEGKT-I 193 (501)
T ss_pred H-HHHHHhCCCCCccceeecCCcchhHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCE-E
Confidence 0 00111122222356788999999999999999999 99999999999999 7788888888999886 9
Q ss_pred HHHHHhHHHHHHHHHHH
Q psy14062 304 QLVETDLKALEPELRKA 320 (388)
Q Consensus 304 i~vtH~l~~l~~~~d~~ 320 (388)
+++||.++++.+.||++
T Consensus 194 i~ITHKL~Ev~~iaDrv 210 (501)
T COG3845 194 IFITHKLKEVMAIADRV 210 (501)
T ss_pred EEEeccHHHHHHhhCee
Confidence 99999999999999986
No 167
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.7e-28 Score=234.26 Aligned_cols=199 Identities=18% Similarity=0.195 Sum_probs=137.8
Q ss_pred CcEEEEEEEeeceEEec--CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 73 PRLIITKIVAFNFKSYA--GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~--~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
+++.+.+++ ++|+ ++.++ ++|||+|.+ |++++|+||||||||||
T Consensus 6 ~~l~~~nl~----~~~~~~~~~il--------~~isl~i~~----------------------Ge~~~l~G~nGsGKSTL 51 (271)
T PRK13632 6 VMIKVENVS----FSYPNSENNAL--------KNVSFEINE----------------------GEYVAILGHNGSGKSTI 51 (271)
T ss_pred eEEEEEeEE----EEcCCCCccce--------eeeEEEEcC----------------------CCEEEEECCCCCCHHHH
Confidence 356677777 7785 34454 499999999 99999999999999999
Q ss_pred HhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccC-CCCCcceEEEEEEeccccCCCCccccccC
Q psy14062 151 IDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD-QVGGVSRCSVAIHFAQIIDKPNEEYEIIP 229 (388)
Q Consensus 151 l~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~-~~~~~~~~eV~~~~~~~~~~~~~~~~~~~ 229 (388)
+++|+ |++ ++.+|++.+.|..+.. ......+ +.++|++|++. .++..+..++...................
T Consensus 52 l~~l~----Gl~-~p~~G~I~~~g~~i~~--~~~~~~~-~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 123 (271)
T PRK13632 52 SKILT----GLL-KPQSGEIKIDGITISK--ENLKEIR-KKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDII 123 (271)
T ss_pred HHHHh----cCC-CCCCceEEECCEecCc--CCHHHHh-cceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHH
Confidence 99999 998 7889998887754421 1112233 46999999864 44445554432211111011111000000
Q ss_pred CceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHH
Q psy14062 230 GTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQ 304 (388)
Q Consensus 230 ~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii 304 (388)
...+...++..+.++.+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.++++++..+++
T Consensus 124 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~------~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tii 197 (271)
T PRK13632 124 DDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLAL------NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLI 197 (271)
T ss_pred HHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 011222233334567789999999999999999999 99999999999999 6777788887665434599
Q ss_pred HHHHhHHHHHHHHHHH
Q psy14062 305 LVETDLKALEPELRKA 320 (388)
Q Consensus 305 ~vtH~l~~l~~~~d~~ 320 (388)
++||+++.+. .+|++
T Consensus 198 i~sH~~~~~~-~~d~v 212 (271)
T PRK13632 198 SITHDMDEAI-LADKV 212 (271)
T ss_pred EEEechhHHh-hCCEE
Confidence 9999999885 67765
No 168
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.4e-28 Score=234.29 Aligned_cols=205 Identities=16% Similarity=0.229 Sum_probs=134.9
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|++.. ++...+|+||||+|.+ |++++|+||||||||||+++|
T Consensus 3 l~~~~l~----~~~~~~~---~~~~~~l~~is~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~i 53 (280)
T PRK13649 3 INLQNVS----YTYQAGT---PFEGRALFDVNLTIED----------------------GSYTAFIGHTGSGKSTIMQLL 53 (280)
T ss_pred EEEEEEE----EEcCCCC---ccccceeeeeEEEEcC----------------------CcEEEEECCCCCCHHHHHHHH
Confidence 4455555 6786421 0101235599999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCc-cchhhhhccceeEecccC--CCCCcceEEEEEEeccccCCCCccccccCCc
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSD--QVGGVSRCSVAIHFAQIIDKPNEEYEIIPGT 231 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~-~~~~lr~~~i~~l~q~~~--~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~ 231 (388)
+ |++ ++.+|++.+.|..+..... ......++.++|++|++. .++ .++.++..+.....+............
T Consensus 54 ~----Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~ 127 (280)
T PRK13649 54 N----GLH-VPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALARE 127 (280)
T ss_pred h----CCC-CCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9 998 7789998887754421110 001122346999999862 333 343332211111111111100000001
Q ss_pred eEEEEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 232 DLEIARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 232 ~l~~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
.+...++. ...+.++..|||||+||+.||++|+. +|++|||||||++| +.+.+.+.++++++. +|++
T Consensus 128 ~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-tiii 200 (280)
T PRK13649 128 KLALVGISESLFEKNPFELSGGQMRRVAIAGILAM------EPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGM-TIVL 200 (280)
T ss_pred HHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCC-EEEE
Confidence 11222232 23466788999999999999999999 99999999999999 667778877765544 5999
Q ss_pred HHHhHHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKAV 321 (388)
Q Consensus 306 vtH~l~~l~~~~d~~~ 321 (388)
+||+++.+...+|++.
T Consensus 201 vsH~~~~~~~~~d~i~ 216 (280)
T PRK13649 201 VTHLMDDVANYADFVY 216 (280)
T ss_pred EeccHHHHHHhCCEEE
Confidence 9999999999888753
No 169
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.4e-28 Score=229.29 Aligned_cols=200 Identities=17% Similarity=0.180 Sum_probs=139.0
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.+++ ++|++..+++ ||||+|.+ |++++|+||||||||||+++
T Consensus 3 ~l~~~~l~----~~~~~~~~l~--------~is~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~ 48 (250)
T PRK14247 3 KIEIRDLK----VSFGQVEVLD--------GVNLEIPD----------------------NTITALMGPSGSGKSTLLRV 48 (250)
T ss_pred eEEEEeeE----EEECCeeeee--------cceeEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 35566666 6788766654 99999999 99999999999999999999
Q ss_pred hhhcccEEEcC----CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCC--CCccc-c
Q psy14062 154 MLFRFNAIIGP----NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK--PNEEY-E 226 (388)
Q Consensus 154 i~~~~ngIiGp----ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~--~~~~~-~ 226 (388)
|+ |++-| +.+|++.+.|..+.- ..... +++.+++++|++..++..++.++.......... ..... .
T Consensus 49 i~----G~~~~~~~~~~~G~i~~~g~~i~~--~~~~~-~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 121 (250)
T PRK14247 49 FN----RLIELYPEARVSGEVYLDGQDIFK--MDVIE-LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE 121 (250)
T ss_pred Hh----ccCCCCCCCCCceEEEECCEECCc--CCHHH-HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHH
Confidence 99 98843 369998887764421 11122 335699999998766666655433211111010 00000 0
Q ss_pred ccCCceEEEEEEe----eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHH
Q psy14062 227 IIPGTDLEIARTA----FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERT 297 (388)
Q Consensus 227 ~~~~~~l~~~r~~----~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~ 297 (388)
.+. ..+...++. ...+..+..|||||+||+.+|++|+. +|+++|||||+++| ..+...+.++.+
T Consensus 122 ~~~-~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~------~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~ 194 (250)
T PRK14247 122 RVR-WALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAF------QPEVLLADEPTANLDPENTAKIESLFLELKK 194 (250)
T ss_pred HHH-HHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhc------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc
Confidence 000 011111111 12456788999999999999999999 99999999999999 667777777654
Q ss_pred HhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 298 EKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 298 e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+ .+++++||+++.+.+.+|++...
T Consensus 195 -~-~tiii~sH~~~~~~~~~d~i~~l 218 (250)
T PRK14247 195 -D-MTIVLVTHFPQQAARISDYVAFL 218 (250)
T ss_pred -C-CEEEEEeCCHHHHHHhcCEEEEE
Confidence 4 35999999999999998876443
No 170
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=3.5e-28 Score=223.06 Aligned_cols=185 Identities=17% Similarity=0.174 Sum_probs=132.1
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|++..+++ |+||+|.+ |++++|+||||||||||+++|
T Consensus 3 l~~~~l~----~~~~~~~~l~--------~is~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l 48 (207)
T PRK13539 3 LEGEDLA----CVRGGRVLFS--------GLSFTLAA----------------------GEALVLTGPNGSGKTTLLRLI 48 (207)
T ss_pred EEEEeEE----EEECCeEEEe--------ceEEEEcC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 4455666 6798766655 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEE
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLE 234 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~ 234 (388)
+ |+. ++.+|++.+.+..+.. .. ....+++++|....++..+..++...+....+..... .. ..+.
T Consensus 49 ~----G~~-~~~~G~i~~~g~~~~~-----~~-~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~---~~-~~l~ 113 (207)
T PRK13539 49 A----GLL-PPAAGTIKLDGGDIDD-----PD-VAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELD---IA-AALE 113 (207)
T ss_pred h----CCC-CCCCceEEECCEeCcc-----hh-hHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHH---HH-HHHH
Confidence 9 988 7789998877654211 11 2345899988766655555443322111111111100 00 1122
Q ss_pred EEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHh
Q psy14062 235 IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETD 309 (388)
Q Consensus 235 ~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~ 309 (388)
..++....+.++..|||||+||+.||++|+. +|+++|+|||+++| +.+...+.++++++. +++++||+
T Consensus 114 ~~~l~~~~~~~~~~LS~G~~qrl~la~al~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-tiii~sH~ 186 (207)
T PRK13539 114 AVGLAPLAHLPFGYLSAGQKRRVALARLLVS------NRPIWILDEPTAALDAAAVALFAELIRAHLAQGG-IVIAATHI 186 (207)
T ss_pred HcCCHHHHcCChhhcCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 2233233456788999999999999999999 99999999999999 777778887766654 59999999
Q ss_pred HHHHHH
Q psy14062 310 LKALEP 315 (388)
Q Consensus 310 l~~l~~ 315 (388)
++.+..
T Consensus 187 ~~~~~~ 192 (207)
T PRK13539 187 PLGLPG 192 (207)
T ss_pred chhhcc
Confidence 988775
No 171
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.93 E-value=5e-28 Score=231.09 Aligned_cols=200 Identities=19% Similarity=0.204 Sum_probs=138.5
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|+++.+|. +|||+|.+ |++++|+||||||||||+++|
T Consensus 2 l~~~nl~----~~~~~~~il~--------~vsl~i~~----------------------Ge~~~l~G~nGsGKSTLl~~l 47 (272)
T PRK13547 2 LTADHLH----VARRHRAILR--------DLSLRIEP----------------------GRVTALLGRNGAGKSTLLKAL 47 (272)
T ss_pred eEEEEEE----EEECCEeEEe--------cceEEEcC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 4566666 7798777755 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCC--------CCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEecccc----CC-C
Q psy14062 155 LFRFNAIIGPNG--------SGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQII----DK-P 221 (388)
Q Consensus 155 ~~~~ngIiGpng--------SGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~----~~-~ 221 (388)
+ |++ ++. +|++.++|..+.- ..... +++.+++++|++..++..+..++........ .. .
T Consensus 48 a----G~~-~p~~~~~~~~~~G~i~~~g~~~~~--~~~~~-~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 119 (272)
T PRK13547 48 A----GDL-TGGGAPRGARVTGDVTLNGEPLAA--IDAPR-LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALT 119 (272)
T ss_pred h----CCC-CCcccccccCCceEEEECCEEccc--CCHHH-HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCC
Confidence 9 988 555 8998887764421 11122 2345899999876544455544322110000 00 0
Q ss_pred CccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHH---------HcCCCCCCCceEEeccchhhH-----HH
Q psy14062 222 NEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLR---------DHGVDLLNNRFLILQEPIAKM-----EV 287 (388)
Q Consensus 222 ~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~---------~~Gi~~~~p~~LLlDEP~s~L-----e~ 287 (388)
....... ...+...++....++++..|||||+||+.||++|+ . +|+++|||||+++| +.
T Consensus 120 ~~~~~~~-~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~------~p~lllLDEPt~~LD~~~~~~ 192 (272)
T PRK13547 120 HRDGEIA-WQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQ------PPRYLLLDEPTAALDLAHQHR 192 (272)
T ss_pred HHHHHHH-HHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCC------CCCEEEEcCccccCCHHHHHH
Confidence 0000000 01111222223346778999999999999999999 5 79999999999999 77
Q ss_pred HHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 288 LYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 288 i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+.+.+.++.++...+++++||+++.+.+.||++...
T Consensus 193 l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 193 LLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 777888877653335999999999999998876443
No 172
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.8e-28 Score=234.05 Aligned_cols=199 Identities=18% Similarity=0.195 Sum_probs=137.0
Q ss_pred cEEEEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
++.+.+++ ++|++ ..+ +++|||+|.+ |++++|+||||||||||+
T Consensus 5 ~l~i~~l~----~~~~~~~~~~--------l~~v~l~i~~----------------------Ge~~~I~G~nGaGKSTLl 50 (282)
T PRK13640 5 IVEFKHVS----FTYPDSKKPA--------LNDISFSIPR----------------------GSWTALIGHNGSGKSTIS 50 (282)
T ss_pred eEEEEEEE----EEcCCCCccc--------eeeEEEEEcC----------------------CCEEEEECCCCCcHHHHH
Confidence 56667777 67864 234 4499999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCC---CcceeehhhhhhcCccchhhhhccceeEecccC-CCCCcceEEEEEEeccccCCCCccccc
Q psy14062 152 DSMLFRFNAIIGPNGS---GKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD-QVGGVSRCSVAIHFAQIIDKPNEEYEI 227 (388)
Q Consensus 152 ~~i~~~~ngIiGpngS---GKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~-~~~~~~~~eV~~~~~~~~~~~~~~~~~ 227 (388)
++|+ |++ ++.+ |++.+.|..+. ...... ++..++++||++. .++..++.++..+.....+........
T Consensus 51 ~~l~----G~~-~p~~g~~G~i~i~g~~~~--~~~~~~-~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~ 122 (282)
T PRK13640 51 KLIN----GLL-LPDDNPNSKITVDGITLT--AKTVWD-IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK 122 (282)
T ss_pred HHHh----ccc-CCCCCCCcEEEECCEECC--cCCHHH-HHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHH
Confidence 9999 998 5555 89887775432 111112 2346999999974 444555544332111111111111000
Q ss_pred cCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhH
Q psy14062 228 IPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTR 302 (388)
Q Consensus 228 ~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ 302 (388)
.....+...++....+..+..|||||+||+.||++|+. +|+++|||||+++| ..+.+.+.++.++...+
T Consensus 123 ~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~------~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~t 196 (282)
T PRK13640 123 IVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAV------EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLT 196 (282)
T ss_pred HHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc------CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 00112222333334567889999999999999999999 99999999999999 66777887776653335
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q psy14062 303 VQLVETDLKALEPELRKAV 321 (388)
Q Consensus 303 ii~vtH~l~~l~~~~d~~~ 321 (388)
|+++||+++.+. .||++.
T Consensus 197 vli~tH~~~~~~-~~d~i~ 214 (282)
T PRK13640 197 VISITHDIDEAN-MADQVL 214 (282)
T ss_pred EEEEecCHHHHH-hCCEEE
Confidence 999999999985 688753
No 173
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.1e-28 Score=232.21 Aligned_cols=199 Identities=19% Similarity=0.224 Sum_probs=136.4
Q ss_pred CcEEEEEEEeeceEEecCc--eeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 73 PRLIITKIVAFNFKSYAGY--VTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~--~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
+++.+.+++ ++|++. .+ |+|+||+|.+ |++++|+||||||||||
T Consensus 6 ~~l~i~~l~----~~~~~~~~~~--------l~~isl~i~~----------------------Ge~~~I~G~nGsGKSTL 51 (269)
T PRK13648 6 SIIVFKNVS----FQYQSDASFT--------LKDVSFNIPK----------------------GQWTSIVGHNGSGKSTI 51 (269)
T ss_pred ceEEEEEEE----EEcCCCCCcc--------eeeeEEEEcC----------------------CCEEEEECCCCCCHHHH
Confidence 467777777 778753 24 4499999999 99999999999999999
Q ss_pred HhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccC-CCCCcceEEEEEEeccccCCCCcc-cccc
Q psy14062 151 IDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD-QVGGVSRCSVAIHFAQIIDKPNEE-YEII 228 (388)
Q Consensus 151 l~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~-~~~~~~~~eV~~~~~~~~~~~~~~-~~~~ 228 (388)
+++|+ |++ ++.+|++.++|..+. ....... ++.+++++|++. .++..+..+...+........... ...+
T Consensus 52 l~~i~----Gl~-~~~~G~i~~~g~~~~--~~~~~~~-~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 123 (269)
T PRK13648 52 AKLMI----GIE-KVKSGEIFYNNQAIT--DDNFEKL-RKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRV 123 (269)
T ss_pred HHHHh----cCC-CCCceEEEECCEECC--cCCHHHH-HhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHH
Confidence 99999 998 778999888775432 1111223 346999999874 444444322111110101111000 0000
Q ss_pred CCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHH
Q psy14062 229 PGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRV 303 (388)
Q Consensus 229 ~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~i 303 (388)
. ..+...++..+.+..+..||+||+||+.||++|+. +|+++|||||+++| ..+...+.+++++...++
T Consensus 124 ~-~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~ti 196 (269)
T PRK13648 124 S-EALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL------NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITI 196 (269)
T ss_pred H-HHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 0 11222233334456788999999999999999999 99999999999999 667777877765533459
Q ss_pred HHHHHhHHHHHHHHHHHH
Q psy14062 304 QLVETDLKALEPELRKAV 321 (388)
Q Consensus 304 i~vtH~l~~l~~~~d~~~ 321 (388)
+++||+++.+.. +|++.
T Consensus 197 iivtH~~~~~~~-~d~i~ 213 (269)
T PRK13648 197 ISITHDLSEAME-ADHVI 213 (269)
T ss_pred EEEecCchHHhc-CCEEE
Confidence 999999998875 87753
No 174
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4e-28 Score=231.30 Aligned_cols=202 Identities=18% Similarity=0.196 Sum_probs=137.6
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|++..+++ ++||+|.+ |++++|+||||||||||++
T Consensus 20 ~~l~~~~l~----~~~~~~~il~--------~vsl~i~~----------------------Ge~~~i~G~nGsGKSTLl~ 65 (268)
T PRK14248 20 HILEVKDLS----IYYGEKRAVN--------DISMDIEK----------------------HAVTALIGPSGCGKSTFLR 65 (268)
T ss_pred ceEEEEEEE----EEeCCceeee--------ceEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 456677777 7798776655 99999999 9999999999999999999
Q ss_pred hhhhcccEEEc--C--CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCC-cc-cc
Q psy14062 153 SMLFRFNAIIG--P--NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPN-EE-YE 226 (388)
Q Consensus 153 ~i~~~~ngIiG--p--ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~-~~-~~ 226 (388)
+|+ |+.. | +.+|++.+.|..+...... ....++.++|++|++..++. +..++............ .. ..
T Consensus 66 ~l~----Gl~~~~~~~~~~G~i~~~g~~i~~~~~~-~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~ 139 (268)
T PRK14248 66 SIN----RMNDLIPSARSEGEILYEGLNILDSNIN-VVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDE 139 (268)
T ss_pred HHH----hcccccCCCCCceEEEECCEEccccccc-HHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHH
Confidence 999 8762 2 5799988877544211111 11223569999999876653 43332211101111000 00 00
Q ss_pred ccCCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHH
Q psy14062 227 IIPGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERT 297 (388)
Q Consensus 227 ~~~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~ 297 (388)
... ..+...+. ....+..+..|||||+||+.||++|+. +|+++||||||++| +.+...+.++.+
T Consensus 140 ~~~-~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 212 (268)
T PRK14248 140 IVE-ESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAM------KPAVLLLDEPASALDPISNAKIEELITELKE 212 (268)
T ss_pred HHH-HHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhC------CCCEEEEcCCCcccCHHHHHHHHHHHHHHhc
Confidence 000 00111111 122356788999999999999999999 99999999999999 667777777754
Q ss_pred HhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 298 EKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 298 e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+ .+++++||+++.+.+.||++...
T Consensus 213 -~-~tiii~tH~~~~~~~~~d~v~~l 236 (268)
T PRK14248 213 -E-YSIIIVTHNMQQALRVSDRTAFF 236 (268)
T ss_pred -C-CEEEEEEeCHHHHHHhCCEEEEE
Confidence 3 36999999999999999876433
No 175
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.7e-28 Score=234.92 Aligned_cols=206 Identities=17% Similarity=0.250 Sum_probs=136.4
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.+++ ++|+++.. +...+|+||||+|.+ |++++|+||||||||||+++
T Consensus 6 ~l~i~nl~----~~~~~~~~---~~~~il~~is~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~ 56 (289)
T PRK13645 6 DIILDNVS----YTYAKKTP---FEFKALNNTSLTFKK----------------------NKVTCVIGTTGSGKSTMIQL 56 (289)
T ss_pred eEEEEEEE----EEeCCCCc---cccceeeeeEEEEeC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 46666776 77876420 001124599999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhc-Cc-cchhhhhccceeEecccCC-CCCcceEEEEEEeccccCCCCcc-ccccC
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVF-GY-RASKIRANKLSVLMHKSDQ-VGGVSRCSVAIHFAQIIDKPNEE-YEIIP 229 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vl-g~-~~~~lr~~~i~~l~q~~~~-~~~~~~~eV~~~~~~~~~~~~~~-~~~~~ 229 (388)
|+ |++ ++.+|++.+.|..+... .. .....+++.+++++|++.. ....+..++..+.....+..... ...+.
T Consensus 57 l~----Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~ 131 (289)
T PRK13645 57 TN----GLI-ISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVP 131 (289)
T ss_pred Hh----cCC-CCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99 998 77899988877544210 00 0111223469999998632 11223322211110100111100 00110
Q ss_pred CceEEEEEE-eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHH
Q psy14062 230 GTDLEIART-AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRV 303 (388)
Q Consensus 230 ~~~l~~~r~-~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~i 303 (388)
..+...++ ....++.+..|||||+||+.||++|+. +|++||||||+++| +.+...+.++.++...++
T Consensus 132 -~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~------~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti 204 (289)
T PRK13645 132 -ELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAM------DGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRI 204 (289)
T ss_pred -HHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHh------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 11222233 123467788999999999999999999 99999999999999 667777877766533359
Q ss_pred HHHHHhHHHHHHHHHHH
Q psy14062 304 QLVETDLKALEPELRKA 320 (388)
Q Consensus 304 i~vtH~l~~l~~~~d~~ 320 (388)
+++||+++.+.+.||++
T Consensus 205 iiisH~~~~~~~~~d~i 221 (289)
T PRK13645 205 IMVTHNMDQVLRIADEV 221 (289)
T ss_pred EEEecCHHHHHHhCCEE
Confidence 99999999999998875
No 176
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.9e-28 Score=256.57 Aligned_cols=205 Identities=15% Similarity=0.150 Sum_probs=142.5
Q ss_pred CcEEEEEEEeeceEEecC----ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChh
Q psy14062 73 PRLIITKIVAFNFKSYAG----YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKS 148 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~----~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKS 148 (388)
+++.+.+++ ++|++ ..+ |+||||+|.+ |++++||||||||||
T Consensus 11 ~~l~v~~l~----~~y~~~~~~~~~--------l~~is~~v~~----------------------Ge~~~lvG~nGsGKS 56 (623)
T PRK10261 11 DVLAVENLN----IAFMQEQQKIAA--------VRNLSFSLQR----------------------GETLAIVGESGSGKS 56 (623)
T ss_pred ceEEEeceE----EEecCCCCceeE--------EEeeEEEECC----------------------CCEEEEECCCCChHH
Confidence 456777777 77863 234 4599999999 999999999999999
Q ss_pred hHHhhhhhcccEEEcCCCCCcceeehhhhh--------hcCccc---hhhhhccceeEeccc--CCCCCcceEEEEEEec
Q psy14062 149 NVIDSMLFRFNAIIGPNGSGKSNVIDSMLF--------VFGYRA---SKIRANKLSVLMHKS--DQVGGVSRCSVAIHFA 215 (388)
Q Consensus 149 TLl~~i~~~~ngIiGpngSGKs~i~da~i~--------vlg~~~---~~lr~~~i~~l~q~~--~~~~~~~~~eV~~~~~ 215 (388)
||+++|+ |++ ++.+|++.+.+..+. +..... ...|++.++++||++ .+++.+++.+......
T Consensus 57 TLl~~l~----Gll-~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~ 131 (623)
T PRK10261 57 VTALALM----RLL-EQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESI 131 (623)
T ss_pred HHHHHHH----cCC-CCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHH
Confidence 9999999 998 677999877653221 000111 123445799999987 4555556554322111
Q ss_pred ccc-CCCCcc-ccccCCceEEEEEEe---eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----
Q psy14062 216 QII-DKPNEE-YEIIPGTDLEIARTA---FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM----- 285 (388)
Q Consensus 216 ~~~-~~~~~~-~~~~~~~~l~~~r~~---~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L----- 285 (388)
..+ +..... ...+. ..+...++. ...++++..|||||+||+.||++|+. +|++|||||||++|
T Consensus 132 ~~~~~~~~~~~~~~~~-~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~------~P~lLllDEPt~~LD~~~~ 204 (623)
T PRK10261 132 RLHQGASREEAMVEAK-RMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSC------RPAVLIADEPTTALDVTIQ 204 (623)
T ss_pred HHhcCCCHHHHHHHHH-HHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhC------CCCEEEEeCCCCccCHHHH
Confidence 111 111111 01111 122222332 12467889999999999999999999 99999999999999
Q ss_pred HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 286 EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 286 e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
.++..+++++.++...+|+++||+++.+.+.||++.-.
T Consensus 205 ~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 205 AQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 77888998887663335999999999999999876443
No 177
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.93 E-value=4.9e-28 Score=228.61 Aligned_cols=202 Identities=16% Similarity=0.154 Sum_probs=136.5
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|++..++. ||||+|.+ |++++|+||||||||||+++
T Consensus 3 ~l~~~~l~----~~~~~~~~l~--------~isl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~ 48 (253)
T TIGR02323 3 LLQVSGLS----KSYGGGKGCR--------DVSFDLYP----------------------GEVLGIVGESGSGKSTLLGC 48 (253)
T ss_pred eEEEeeeE----EEeCCceEee--------cceEEEeC----------------------CcEEEEECCCCCCHHHHHHH
Confidence 56777777 7898766654 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhh-----hhhcCccchh---hhhccceeEecccCCC--CCcceE-EEEEEeccccCC-C
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSM-----LFVFGYRASK---IRANKLSVLMHKSDQV--GGVSRC-SVAIHFAQIIDK-P 221 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~-----i~vlg~~~~~---lr~~~i~~l~q~~~~~--~~~~~~-eV~~~~~~~~~~-~ 221 (388)
|+ |++ ++.+|++.+.+.. +. ...... .+++.+++++|++... +..+.. ++...+...... .
T Consensus 49 l~----G~~-~~~~G~i~~~g~~~~~~~~~--~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 121 (253)
T TIGR02323 49 LA----GRL-APDHGTATYIMRSGAELELY--QLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHY 121 (253)
T ss_pred Hh----CCC-CCCCcEEEEecccccccccc--cCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccch
Confidence 99 998 7789999887753 22 111111 2235689999986421 211111 110000000000 0
Q ss_pred CccccccCCceEEEEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHH
Q psy14062 222 NEEYEIIPGTDLEIARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEE 295 (388)
Q Consensus 222 ~~~~~~~~~~~l~~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el 295 (388)
....... ...+...+.. ...+..+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.++
T Consensus 122 ~~~~~~~-~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~------~p~vlllDEP~~~LD~~~~~~l~~~l~~~ 194 (253)
T TIGR02323 122 GNIRAAA-HDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVT------RPRLVFMDEPTGGLDVSVQARLLDLLRGL 194 (253)
T ss_pred HHHHHHH-HHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhc------CCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 0000000 0112222222 23456788999999999999999999 99999999999999 6677777776
Q ss_pred HHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 296 RTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 296 ~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
.++...+++++||+++.+...+|++...
T Consensus 195 ~~~~~~tii~vsH~~~~~~~~~d~~~~l 222 (253)
T TIGR02323 195 VRDLGLAVIIVTHDLGVARLLAQRLLVM 222 (253)
T ss_pred HHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 6553335999999999999988876443
No 178
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=5.6e-28 Score=229.84 Aligned_cols=202 Identities=15% Similarity=0.212 Sum_probs=139.0
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|++..++. |+||+|.+ |++++|+||||||||||++
T Consensus 9 ~~l~i~~v~----~~~~~~~il~--------~vsl~i~~----------------------Ge~~~i~G~nGsGKSTLl~ 54 (264)
T PRK14243 9 TVLRTENLN----VYYGSFLAVK--------NVWLDIPK----------------------NQITAFIGPSGCGKSTILR 54 (264)
T ss_pred eEEEEeeeE----EEECCEEEee--------cceEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 456677777 7898766654 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcC----CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccccc
Q psy14062 153 SMLFRFNAIIGP----NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEII 228 (388)
Q Consensus 153 ~i~~~~ngIiGp----ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~ 228 (388)
+|+ |+.++ +.+|++.+.+..+.......... ++.+++++|++..++. +..++........+.........
T Consensus 55 ~l~----Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~-~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~ 128 (264)
T PRK14243 55 CFN----RLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEV-RRRIGMVFQKPNPFPK-SIYDNIAYGARINGYKGDMDELV 128 (264)
T ss_pred HHH----hhhcccCCCCCceEEEECCEEccccccChHHH-hhhEEEEccCCccccc-cHHHHHHhhhhhcCcchHHHHHH
Confidence 999 98753 36899888775442111111222 3469999999876653 43332211111101000000000
Q ss_pred CCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 229 PGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 229 ~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
. ..+..... ....+..+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.++.+.
T Consensus 129 ~-~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~- 200 (264)
T PRK14243 129 E-RSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAV------QPEVILMDEPCSALDPISTLRIEELMHELKEQ- 200 (264)
T ss_pred H-HHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhc------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-
Confidence 0 00011111 112356788999999999999999999 99999999999999 6677788777653
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
. +|+++||+++.+.+.||++..+
T Consensus 201 ~-tvi~vtH~~~~~~~~~d~v~~l 223 (264)
T PRK14243 201 Y-TIIIVTHNMQQAARVSDMTAFF 223 (264)
T ss_pred C-EEEEEecCHHHHHHhCCEEEEE
Confidence 3 6999999999999999987554
No 179
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.93 E-value=3.8e-28 Score=252.42 Aligned_cols=204 Identities=17% Similarity=0.162 Sum_probs=139.5
Q ss_pred CcEEEEEEEeeceEEecC----ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChh
Q psy14062 73 PRLIITKIVAFNFKSYAG----YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKS 148 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~----~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKS 148 (388)
+++.+.+++ ++|++ +.++ ++|||+|.+ |++++|+||||||||
T Consensus 4 ~~l~~~~l~----~~~~~~~~~~~~l--------~~isl~i~~----------------------Ge~~~iiG~nGsGKS 49 (529)
T PRK15134 4 PLLAIENLS----VAFRQQQTVRTVV--------NDVSLQIEA----------------------GETLALVGESGSGKS 49 (529)
T ss_pred ceEEEeceE----EEecCCCCceeee--------eceEEEEeC----------------------CCEEEEECCCCCcHH
Confidence 356677777 78963 3454 499999999 999999999999999
Q ss_pred hHHhhhhhcccEEEcCC-----CCCcceeehhhhhhcCcc-chhhhhccceeEecccC--CCCCcceEEEEEEecccc-C
Q psy14062 149 NVIDSMLFRFNAIIGPN-----GSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSD--QVGGVSRCSVAIHFAQII-D 219 (388)
Q Consensus 149 TLl~~i~~~~ngIiGpn-----gSGKs~i~da~i~vlg~~-~~~lr~~~i~~l~q~~~--~~~~~~~~eV~~~~~~~~-~ 219 (388)
||+++|+ |++ ++ .+|++.+.|..+...... ....|.+.++++||++. ..+..++.++........ +
T Consensus 50 TLl~~i~----G~~-~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (529)
T PRK15134 50 VTALSIL----RLL-PSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRG 124 (529)
T ss_pred HHHHHHh----cCC-CCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcC
Confidence 9999999 998 53 699988877654322111 11234457999999864 333333332211100000 1
Q ss_pred CCCc-cccccCCceEEEEEEee---eCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHh
Q psy14062 220 KPNE-EYEIIPGTDLEIARTAF---YDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYG 290 (388)
Q Consensus 220 ~~~~-~~~~~~~~~l~~~r~~~---~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~ 290 (388)
.... ....+. ..+...++.. ..++.+..|||||+||+.||++|+. +|++|||||||++| ..+.+
T Consensus 125 ~~~~~~~~~~~-~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~------~p~llllDEPt~~LD~~~~~~l~~ 197 (529)
T PRK15134 125 MRREAARGEIL-NCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLT------RPELLIADEPTTALDVSVQAQILQ 197 (529)
T ss_pred CCHHHHHHHHH-HHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhc------CCCEEEEcCCCCccCHHHHHHHHH
Confidence 1111 001111 1222223321 2356789999999999999999999 99999999999999 77788
Q ss_pred hhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 291 KYDEERTEKLTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 291 ~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
++.+++++...+|+++||+++.+...||++..
T Consensus 198 ~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~ 229 (529)
T PRK15134 198 LLRELQQELNMGLLFITHNLSIVRKLADRVAV 229 (529)
T ss_pred HHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEE
Confidence 88888765333599999999999999987643
No 180
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.93 E-value=5.8e-28 Score=250.63 Aligned_cols=203 Identities=15% Similarity=0.155 Sum_probs=138.6
Q ss_pred EEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 76 IITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 76 ~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.+.+++ ++|+++.+++ +|||+|.+ |++++|+||||||||||+++|+
T Consensus 2 ~~~~l~----~~~~~~~~l~--------~is~~i~~----------------------Ge~~~iiG~nGsGKSTLl~~l~ 47 (520)
T TIGR03269 2 EVKNLT----KKFDGKEVLK--------NISFTIEE----------------------GEVLGILGRSGAGKSVLMHVLR 47 (520)
T ss_pred EEEEEE----EEECCeEeee--------ceeEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh
Confidence 345566 7798766655 99999999 9999999999999999999999
Q ss_pred hcccEEEc-CCCCCcceeeh----------------hhhhhcCcc------------ch--hhhhccceeEecc-cCCCC
Q psy14062 156 FRFNAIIG-PNGSGKSNVID----------------SMLFVFGYR------------AS--KIRANKLSVLMHK-SDQVG 203 (388)
Q Consensus 156 ~~~ngIiG-pngSGKs~i~d----------------a~i~vlg~~------------~~--~lr~~~i~~l~q~-~~~~~ 203 (388)
|++- ++.+|++.+.+ ..+.++|.. .. ..+++.++++||+ +..++
T Consensus 48 ----Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 123 (520)
T TIGR03269 48 ----GMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYG 123 (520)
T ss_pred ----hcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCC
Confidence 9862 46799988762 111111210 00 1123469999997 45665
Q ss_pred CcceEEEEEEeccccCCCCcc-ccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccch
Q psy14062 204 GVSRCSVAIHFAQIIDKPNEE-YEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPI 282 (388)
Q Consensus 204 ~~~~~eV~~~~~~~~~~~~~~-~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~ 282 (388)
..++.+...+.....+..... ...+. ..+...++....++.+..|||||+||+.||++|+. +|++|||||||
T Consensus 124 ~~tv~~~l~~~~~~~~~~~~~~~~~~~-~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~------~p~lllLDEPt 196 (520)
T TIGR03269 124 DDTVLDNVLEALEEIGYEGKEAVGRAV-DLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAK------EPFLFLADEPT 196 (520)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhc------CCCEEEeeCCc
Confidence 555443322111111111110 01111 12222233333467789999999999999999999 99999999999
Q ss_pred hhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 283 AKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 283 s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
++| +.+.+++.++.++...+|+++||+++.+.+.||++...
T Consensus 197 ~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l 242 (520)
T TIGR03269 197 GTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWL 242 (520)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 999 77777888886653335999999999999999887544
No 181
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.6e-27 Score=227.60 Aligned_cols=195 Identities=16% Similarity=0.275 Sum_probs=136.2
Q ss_pred cEEEEEEEeeceEEec-CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSYA-GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~-~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
++.+.+++ ++|+ ++.++. |+||+|.+ |++++|+||||||||||++
T Consensus 6 ~l~~~~l~----~~~~~~~~il~--------~vsl~i~~----------------------Ge~~~l~G~nGsGKSTLl~ 51 (272)
T PRK15056 6 GIVVNDVT----VTWRNGHTALR--------DASFTVPG----------------------GSIAALVGVNGSGKSTLFK 51 (272)
T ss_pred eEEEEeEE----EEecCCcEEEE--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 45666666 7895 455654 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCC--CcceEEEEEE--ecc--ccCCCCc-cc
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVG--GVSRCSVAIH--FAQ--IIDKPNE-EY 225 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~--~~~~~eV~~~--~~~--~~~~~~~-~~ 225 (388)
+|+ |++ ++.+|++.++|..+. ...+...++|++|++.... ..+..++... +.. ....... ..
T Consensus 52 ~l~----Gl~-~p~~G~i~~~g~~i~------~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 120 (272)
T PRK15056 52 ALM----GFV-RLASGKISILGQPTR------QALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDR 120 (272)
T ss_pred HHh----CCC-CCCceEEEECCEEhH------HhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHH
Confidence 999 998 778999887765432 1122345899999865421 1122222211 000 0000000 00
Q ss_pred cccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhh
Q psy14062 226 EIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKL 300 (388)
Q Consensus 226 ~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~ 300 (388)
.... ..+...++....++++..|||||+||+.||++|+. +|+++|+|||+++| +.+.+.+.++++++.
T Consensus 121 ~~~~-~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~------~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~ 193 (272)
T PRK15056 121 QIVT-AALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQ------QGQVILLDEPFTGVDVKTEARIISLLRELRDEGK 193 (272)
T ss_pred HHHH-HHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhc------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCC
Confidence 0000 11222233333467788999999999999999999 99999999999999 677778888766554
Q ss_pred hHHHHHHHhHHHHHHHHHHHH
Q psy14062 301 TRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 301 ~~ii~vtH~l~~l~~~~d~~~ 321 (388)
+++++||+++.+...++++.
T Consensus 194 -tviivsH~~~~~~~~~d~v~ 213 (272)
T PRK15056 194 -TMLVSTHNLGSVTEFCDYTV 213 (272)
T ss_pred -EEEEEeCCHHHHHHhCCEEE
Confidence 59999999999999998763
No 182
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.93 E-value=6.1e-28 Score=249.31 Aligned_cols=200 Identities=18% Similarity=0.217 Sum_probs=141.4
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|+++.+++ ||||++.+ |++++|+||||||||||+++|
T Consensus 2 l~i~~l~----~~~~~~~il~--------~isl~i~~----------------------Ge~~~liG~nGsGKSTLl~~i 47 (500)
T TIGR02633 2 LEMKGIV----KTFGGVKALD--------GIDLEVRP----------------------GECVGLCGENGAGKSTLMKIL 47 (500)
T ss_pred EEEEeEE----EEeCCeEeec--------ceEEEEeC----------------------CcEEEEECCCCCCHHHHHHHH
Confidence 4556666 7798776655 99999999 999999999999999999999
Q ss_pred hhcccEEEcCC--CCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEecccc--C--CCCcc-ccc
Q psy14062 155 LFRFNAIIGPN--GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQII--D--KPNEE-YEI 227 (388)
Q Consensus 155 ~~~~ngIiGpn--gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~--~--~~~~~-~~~ 227 (388)
+ |++ ++ .+|++.+.|..+.. ......++..++|+||++..++..++.++........ . ..... ...
T Consensus 48 ~----G~~-~~~~~~G~i~~~g~~~~~--~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 120 (500)
T TIGR02633 48 S----GVY-PHGTWDGEIYWSGSPLKA--SNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLR 120 (500)
T ss_pred h----CCC-CCCCCCeEEEECCEECCC--CCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHH
Confidence 9 988 54 69998887754421 1111223456999999987777666654332111110 0 00000 000
Q ss_pred cCCceEEEEEEeee-CCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhh
Q psy14062 228 IPGTDLEIARTAFY-DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLT 301 (388)
Q Consensus 228 ~~~~~l~~~r~~~~-~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~ 301 (388)
. ...+...++... .++++..|||||+||+.||++|+. +|++|||||||++| ..+...+.++++++.
T Consensus 121 ~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~- 192 (500)
T TIGR02633 121 A-KNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK------QARLLILDEPSSSLTEKETEILLDIIRDLKAHGV- 192 (500)
T ss_pred H-HHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-
Confidence 0 011222222222 245688999999999999999999 99999999999999 777778888776554
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q psy14062 302 RVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 302 ~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+|+++||+++.+...||++...
T Consensus 193 tviiitHd~~~~~~~~d~i~~l 214 (500)
T TIGR02633 193 ACVYISHKLNEVKAVCDTICVI 214 (500)
T ss_pred EEEEEeCcHHHHHHhCCEEEEE
Confidence 5999999999999999976544
No 183
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.4e-28 Score=232.16 Aligned_cols=202 Identities=18% Similarity=0.208 Sum_probs=138.0
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|++... ..+|++|||+|.+ |++++|+||||||||||+++
T Consensus 4 ~l~~~~l~----~~~~~~~~-----~~~l~~v~l~i~~----------------------Ge~~~I~G~nGsGKSTLl~~ 52 (277)
T PRK13642 4 ILEVENLV----FKYEKESD-----VNQLNGVSFSITK----------------------GEWVSIIGQNGSGKSTTARL 52 (277)
T ss_pred eEEEEEEE----EEcCCCCc-----CeeeeeeEEEEcC----------------------CCEEEEECCCCCcHHHHHHH
Confidence 45566666 67864210 0124599999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccC-CCCCcceEEEEEEeccccCCCCccc-cccCCc
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD-QVGGVSRCSVAIHFAQIIDKPNEEY-EIIPGT 231 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~-~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~~~ 231 (388)
|+ |++ ++.+|++.+.|..+. ....... ...++|++|++. .++..++.++........+...... ..+ ..
T Consensus 53 l~----Gl~-~~~~G~i~~~g~~i~--~~~~~~~-~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~-~~ 123 (277)
T PRK13642 53 ID----GLF-EEFEGKVKIDGELLT--AENVWNL-RRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRV-DE 123 (277)
T ss_pred Hh----cCC-CCCCCEEEECCEECC--cCCHHHH-hcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHH-HH
Confidence 99 999 788999888776442 1111223 356999999874 3444454433221111111111100 000 01
Q ss_pred eEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHH
Q psy14062 232 DLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLV 306 (388)
Q Consensus 232 ~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~v 306 (388)
.+...++..+.+.++..|||||+||+.||++|+. +|+++|+|||+++| +.+...+.++.++...+++++
T Consensus 124 ~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~------~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~ 197 (277)
T PRK13642 124 ALLAVNMLDFKTREPARLSGGQKQRVAVAGIIAL------RPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSI 197 (277)
T ss_pred HHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 1222233334567789999999999999999999 99999999999999 777778888776523359999
Q ss_pred HHhHHHHHHHHHHHHH
Q psy14062 307 ETDLKALEPELRKAVN 322 (388)
Q Consensus 307 tH~l~~l~~~~d~~~~ 322 (388)
||+++.+. .+|++..
T Consensus 198 sH~~~~~~-~~d~i~~ 212 (277)
T PRK13642 198 THDLDEAA-SSDRILV 212 (277)
T ss_pred eCCHHHHH-hCCEEEE
Confidence 99999986 5887633
No 184
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7.8e-28 Score=227.04 Aligned_cols=203 Identities=14% Similarity=0.139 Sum_probs=140.0
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
|++.+.+++ ++|+++.++. |+||+|.+ |++++|+||||||||||++
T Consensus 3 ~~l~~~~l~----~~~~~~~~l~--------~isl~i~~----------------------Ge~~~i~G~nGsGKSTLl~ 48 (251)
T PRK14270 3 IKMESKNLN----LWYGEKQALN--------DINLPIYE----------------------NKITALIGPSGCGKSTFLR 48 (251)
T ss_pred cEEEEEEeE----EEECCeeeee--------ceeEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 467777777 7788766654 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcC----CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCC-CCccccc
Q psy14062 153 SMLFRFNAIIGP----NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK-PNEEYEI 227 (388)
Q Consensus 153 ~i~~~~ngIiGp----ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~-~~~~~~~ 227 (388)
+|+ |+.-| +.+|++.+.|..+...... ....++.+++++|++..++ .+..++..+.....+. .......
T Consensus 49 ~l~----G~~~~~~~~~~~G~i~~~g~~i~~~~~~-~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~ 122 (251)
T PRK14270 49 CLN----RMNDLISNVKIEGEVLLDGKNIYDKDVD-VVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDK 122 (251)
T ss_pred HHH----hccCcccCCCCccEEEECCEeccccccc-HHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHH
Confidence 999 98733 2689988877654311111 1122356999999987765 5554433221111111 0000000
Q ss_pred cCCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 228 IPGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 228 ~~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
.....+...++ ....+.++..||+||+||+.||++|+. +|+++|||||+++| ..+...+.++.+
T Consensus 123 ~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~------~p~llllDEP~~~LD~~~~~~l~~~L~~~~~- 195 (251)
T PRK14270 123 IVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAV------KPDVILMDEPTSALDPISTLKIEDLMVELKK- 195 (251)
T ss_pred HHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-
Confidence 00001111111 112356788999999999999999999 99999999999999 667777777765
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+ .+++++||+++.+.+.+|++...
T Consensus 196 ~-~tiiivsH~~~~~~~~~d~v~~l 219 (251)
T PRK14270 196 E-YTIVIVTHNMQQASRVSDYTAFF 219 (251)
T ss_pred C-CeEEEEEcCHHHHHHhcCEEEEE
Confidence 3 35999999999999999886443
No 185
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.93 E-value=1.3e-27 Score=225.78 Aligned_cols=184 Identities=18% Similarity=0.262 Sum_probs=133.3
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.++. ++|+++.++. ++||+|.+ |++++|+||||||||||+++
T Consensus 4 ~l~~~~l~----~~~~~~~vl~--------~vs~~i~~----------------------Ge~~~I~G~NGsGKSTLl~~ 49 (251)
T PRK09544 4 LVSLENVS----VSFGQRRVLS--------DVSLELKP----------------------GKILTLLGPNGAGKSTLVRV 49 (251)
T ss_pred EEEEeceE----EEECCceEEE--------eEEEEEcC----------------------CcEEEEECCCCCCHHHHHHH
Confidence 56666676 7898776655 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCc--ceEEEEEEeccccCCCCccccccCCc
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGV--SRCSVAIHFAQIIDKPNEEYEIIPGT 231 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~--~~~eV~~~~~~~~~~~~~~~~~~~~~ 231 (388)
|+ |++ ++.+|++.+.+ ...++|++|++..++.. +..+... +. .+..... .. .
T Consensus 50 i~----Gl~-~p~~G~i~~~~--------------~~~i~~v~q~~~~~~~l~~~~~~~~~-~~--~~~~~~~---~~-~ 103 (251)
T PRK09544 50 VL----GLV-APDEGVIKRNG--------------KLRIGYVPQKLYLDTTLPLTVNRFLR-LR--PGTKKED---IL-P 103 (251)
T ss_pred Hh----CCC-CCCceEEEECC--------------ccCEEEeccccccccccChhHHHHHh-cc--ccccHHH---HH-H
Confidence 99 998 77899976542 12589999987654432 1111100 00 0000000 00 1
Q ss_pred eEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHH
Q psy14062 232 DLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLV 306 (388)
Q Consensus 232 ~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~v 306 (388)
.+...++..+.+.++..|||||+||+.||++|+. +|+++|||||+++| ..+...+.++.++...+++++
T Consensus 104 ~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiiv 177 (251)
T PRK09544 104 ALKRVQAGHLIDAPMQKLSGGETQRVLLARALLN------RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMV 177 (251)
T ss_pred HHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 1222233333456788999999999999999999 99999999999999 667777777766523359999
Q ss_pred HHhHHHHHHHHHHHHHH
Q psy14062 307 ETDLKALEPELRKAVNF 323 (388)
Q Consensus 307 tH~l~~l~~~~d~~~~y 323 (388)
||+++.+.+.++++...
T Consensus 178 sH~~~~i~~~~d~i~~l 194 (251)
T PRK09544 178 SHDLHLVMAKTDEVLCL 194 (251)
T ss_pred ecCHHHHHHhCCEEEEE
Confidence 99999999999977543
No 186
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6.1e-28 Score=248.75 Aligned_cols=193 Identities=15% Similarity=0.202 Sum_probs=139.0
Q ss_pred EEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC
Q psy14062 86 KSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN 165 (388)
Q Consensus 86 ksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn 165 (388)
++|+++.+++ ||||+|.+ |++++|+||||||||||+++|+ |++ ++
T Consensus 6 ~~~~~~~il~--------~vs~~i~~----------------------Ge~~~liG~nGsGKSTLl~~l~----Gl~-~p 50 (491)
T PRK10982 6 KSFPGVKALD--------NVNLKVRP----------------------HSIHALMGENGAGKSTLLKCLF----GIY-QK 50 (491)
T ss_pred EEeCCEEeee--------eeeEEEcC----------------------CcEEEEECCCCCCHHHHHHHHc----CCC-CC
Confidence 6788776655 99999999 9999999999999999999999 998 77
Q ss_pred CCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEecc-ccCC--CCcc-ccccCCceEEEEEEeee
Q psy14062 166 GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ-IIDK--PNEE-YEIIPGTDLEIARTAFY 241 (388)
Q Consensus 166 gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~-~~~~--~~~~-~~~~~~~~l~~~r~~~~ 241 (388)
.+|++.+.|..+.. ........+.+++++|++..++..++.++...... ..+. .... ..... ..+...++...
T Consensus 51 ~~G~i~~~g~~~~~--~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~l~~~ 127 (491)
T PRK10982 51 DSGSILFQGKEIDF--KSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTK-AIFDELDIDID 127 (491)
T ss_pred CceEEEECCEECCC--CCHHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHH-HHHHHcCCCCC
Confidence 89998887764421 11112223569999999877777776654322110 0010 0000 00000 11222222233
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPE 316 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~ 316 (388)
.++.+..|||||+||+.||++|+. +|++|||||||++| +.+...+.++++.+. +++++||+++.+...
T Consensus 128 ~~~~~~~LSgGq~qrv~lA~al~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~-tvii~tH~~~~~~~~ 200 (491)
T PRK10982 128 PRAKVATLSVSQMQMIEIAKAFSY------NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGC-GIVYISHKMEEIFQL 200 (491)
T ss_pred ccCchhhCCHHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEecCHHHHHHh
Confidence 466789999999999999999999 99999999999999 777778888766555 599999999999999
Q ss_pred HHHHHHH
Q psy14062 317 LRKAVNF 323 (388)
Q Consensus 317 ~d~~~~y 323 (388)
||++...
T Consensus 201 ~d~i~~l 207 (491)
T PRK10982 201 CDEITIL 207 (491)
T ss_pred CCEEEEE
Confidence 9876433
No 187
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.93 E-value=2.1e-27 Score=213.59 Aligned_cols=164 Identities=16% Similarity=0.185 Sum_probs=122.1
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++| +++ ++||++.+ |++++|+||||||||||+++
T Consensus 4 ~l~~~~l~----~~~----~l~--------~vs~~i~~----------------------G~~~~i~G~nGsGKSTLl~~ 45 (182)
T cd03215 4 VLEVRGLS----VKG----AVR--------DVSFEVRA----------------------GEIVGIAGLVGNGQTELAEA 45 (182)
T ss_pred EEEEeccE----EEe----eec--------ceEEEEcC----------------------CcEEEEECCCCCCHHHHHHH
Confidence 56666666 666 544 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccC---CCCCcceEEEEEEeccccCCCCccccccCC
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD---QVGGVSRCSVAIHFAQIIDKPNEEYEIIPG 230 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~---~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~ 230 (388)
|+ |+. ++.+|++.++|..+.-. .....+.+.+++++|++. .++..+..++... .
T Consensus 46 l~----G~~-~~~~G~i~~~g~~~~~~--~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~---------------~- 102 (182)
T cd03215 46 LF----GLR-PPASGEITLDGKPVTRR--SPRDAIRAGIAYVPEDRKREGLVLDLSVAENIAL---------------S- 102 (182)
T ss_pred Hh----CCC-CCCCceEEECCEECCcc--CHHHHHhCCeEEecCCcccCcccCCCcHHHHHHH---------------H-
Confidence 99 998 77899988877543211 111223456899998742 2222221110000 0
Q ss_pred ceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 231 TDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 231 ~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
. .||+||+||+.||++|+. +|+++|||||+++| +.+...+.++++++. ++++
T Consensus 103 ------~----------~LS~G~~qrl~la~al~~------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~-tiii 159 (182)
T cd03215 103 ------S----------LLSGGNQQKVVLARWLAR------DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGK-AVLL 159 (182)
T ss_pred ------h----------hcCHHHHHHHHHHHHHcc------CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCC-EEEE
Confidence 0 099999999999999999 99999999999999 667777777765544 5999
Q ss_pred HHHhHHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKAV 321 (388)
Q Consensus 306 vtH~l~~l~~~~d~~~ 321 (388)
+||+++.+.+.+|++.
T Consensus 160 ~sh~~~~~~~~~d~v~ 175 (182)
T cd03215 160 ISSELDELLGLCDRIL 175 (182)
T ss_pred EeCCHHHHHHhCCEEE
Confidence 9999999999888653
No 188
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.93 E-value=4.2e-28 Score=223.39 Aligned_cols=178 Identities=19% Similarity=0.231 Sum_probs=129.9
Q ss_pred cccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCcc
Q psy14062 104 QISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYR 183 (388)
Q Consensus 104 ~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~ 183 (388)
|+||++.+ |++++|+||||||||||+++|+ |++ ++.+|++.+.+..+. .
T Consensus 16 ~~s~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l~----G~~-~~~~G~i~~~g~~~~--~-- 64 (213)
T TIGR01277 16 EFDLNVAD----------------------GEIVAIMGPSGAGKSTLLNLIA----GFI-EPASGSIKVNDQSHT--G-- 64 (213)
T ss_pred eeEEEEeC----------------------CcEEEEECCCCCCHHHHHHHHh----cCC-CCCCcEEEECCEEcc--c--
Confidence 99999999 9999999999999999999999 998 788999887765432 1
Q ss_pred chhhhhccceeEecccCCCCCcceEEEEE-EeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHH
Q psy14062 184 ASKIRANKLSVLMHKSDQVGGVSRCSVAI-HFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKV 262 (388)
Q Consensus 184 ~~~lr~~~i~~l~q~~~~~~~~~~~eV~~-~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~a 262 (388)
... +.+.+++++|++..++..+..++.. .+.............. ...+...++....++.+..|||||+||+.||++
T Consensus 65 ~~~-~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 65 LAP-YQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKV-VDAAQQVGIADYLDRLPEQLSGGQRQRVALARC 142 (213)
T ss_pred CCh-hccceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHH-HHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHH
Confidence 111 2356999999988877666654332 1111000000000011 112222333334567788999999999999999
Q ss_pred HHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 263 LRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 263 L~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
|+. +|+++|||||+++| +.+.+.+.++.++...+++++||+++.+.+.+|++
T Consensus 143 l~~------~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v 199 (213)
T TIGR01277 143 LVR------PNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQI 199 (213)
T ss_pred Hhc------CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeE
Confidence 999 99999999999999 66777888877653346999999999998888865
No 189
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=1.3e-27 Score=218.14 Aligned_cols=186 Identities=15% Similarity=0.139 Sum_probs=133.0
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|++..++. ++||+|.+ |++++|+||||||||||+++|
T Consensus 2 l~~~~l~----~~~~~~~il~--------~~s~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~i 47 (200)
T PRK13540 2 LDVIELD----FDYHDQPLLQ--------QISFHLPA----------------------GGLLHLKGSNGAGKTTLLKLI 47 (200)
T ss_pred EEEEEEE----EEeCCeeEEe--------eeeEEECC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 4566666 7798777655 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEE
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLE 234 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~ 234 (388)
+ |+. ++.+|++.++|..+. ...... .+.+++++|.+..++..++.++....... .. .. .... ..+.
T Consensus 48 ~----G~~-~~~~G~v~~~g~~~~---~~~~~~-~~~i~~~~q~~~~~~~~tv~~~~~~~~~~-~~-~~--~~~~-~~l~ 113 (200)
T PRK13540 48 A----GLL-NPEKGEILFERQSIK---KDLCTY-QKQLCFVGHRSGINPYLTLRENCLYDIHF-SP-GA--VGIT-ELCR 113 (200)
T ss_pred h----cCC-CCCCeeEEECCCccc---cCHHHH-HhheEEeccccccCcCCCHHHHHHHHHhc-Cc-ch--HHHH-HHHH
Confidence 9 998 778999888765432 111122 35699999987776666655432211000 00 00 0000 1122
Q ss_pred EEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHh
Q psy14062 235 IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETD 309 (388)
Q Consensus 235 ~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~ 309 (388)
..+.....+.+...||+||+||+.+|++|+. +|+++|+|||+++| +.+.+.+.++++++. +++++||+
T Consensus 114 ~~~l~~~~~~~~~~LS~G~~~rv~laral~~------~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~-tiii~sh~ 186 (200)
T PRK13540 114 LFSLEHLIDYPCGLLSSGQKRQVALLRLWMS------KAKLWLLDEPLVALDELSLLTIITKIQEHRAKGG-AVLLTSHQ 186 (200)
T ss_pred HcCCchhhhCChhhcCHHHHHHHHHHHHHhc------CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCC-EEEEEeCC
Confidence 2222233456778999999999999999999 99999999999999 667778877765554 59999999
Q ss_pred HHHHHH
Q psy14062 310 LKALEP 315 (388)
Q Consensus 310 l~~l~~ 315 (388)
...+..
T Consensus 187 ~~~~~~ 192 (200)
T PRK13540 187 DLPLNK 192 (200)
T ss_pred chhccc
Confidence 877754
No 190
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.93 E-value=4.3e-27 Score=209.86 Aligned_cols=143 Identities=20% Similarity=0.317 Sum_probs=110.9
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
++++||+|.+ |++++|+||||||||||+++|+ |+. ++.+|++.+++..+...
T Consensus 18 l~~~~~~i~~----------------------Ge~~~i~G~nGsGKStLl~~l~----G~~-~~~~G~i~~~g~~~~~~- 69 (173)
T cd03246 18 LRNVSFSIEP----------------------GESLAIIGPSGSGKSTLARLIL----GLL-RPTSGRVRLDGADISQW- 69 (173)
T ss_pred eeeeEEEECC----------------------CCEEEEECCCCCCHHHHHHHHH----hcc-CCCCCeEEECCEEcccC-
Confidence 4599999999 9999999999999999999999 998 77899988876543211
Q ss_pred ccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHH
Q psy14062 182 YRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAK 261 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~ 261 (388)
.... +++.+++++|++..++. ++.+ .+ |||||+||+.||+
T Consensus 70 -~~~~-~~~~i~~~~q~~~~~~~-tv~~----------------------~l---------------LS~G~~qrv~la~ 109 (173)
T cd03246 70 -DPNE-LGDHVGYLPQDDELFSG-SIAE----------------------NI---------------LSGGQRQRLGLAR 109 (173)
T ss_pred -CHHH-HHhheEEECCCCccccC-cHHH----------------------HC---------------cCHHHHHHHHHHH
Confidence 1112 23468999987543321 1110 00 9999999999999
Q ss_pred HHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 262 VLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 262 aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
+|+. +|+++|||||+++| ..+...+.++++++. +++++||+++.+. .+|++
T Consensus 110 al~~------~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~-tii~~sh~~~~~~-~~d~v 165 (173)
T cd03246 110 ALYG------NPRILVLDEPNSHLDVEGERALNQAIAALKAAGA-TRIVIAHRPETLA-SADRI 165 (173)
T ss_pred HHhc------CCCEEEEECCccccCHHHHHHHHHHHHHHHhCCC-EEEEEeCCHHHHH-hCCEE
Confidence 9999 99999999999999 667778877765544 5999999998874 57654
No 191
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=9.3e-28 Score=226.64 Aligned_cols=202 Identities=18% Similarity=0.262 Sum_probs=139.4
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.+++ ++|++..++. |+||+|.+ |++++|+||||||||||+++
T Consensus 4 ~l~~~nl~----~~~~~~~~l~--------~isl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~ 49 (252)
T PRK14256 4 KVKLEQLN----VHFGKNHAVK--------DVSMDFPE----------------------NSVTAIIGPSGCGKSTVLRS 49 (252)
T ss_pred EEEEEEEE----EEeCCeeEEe--------cceEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 46667777 7798766655 99999999 99999999999999999999
Q ss_pred hhhcccEEEc--C--CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCC-CCccc-cc
Q psy14062 154 MLFRFNAIIG--P--NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK-PNEEY-EI 227 (388)
Q Consensus 154 i~~~~ngIiG--p--ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~-~~~~~-~~ 227 (388)
|+ |++- | +.+|++.+.+..+.......... ++.++++||++..++..+..++.......... ..... ..
T Consensus 50 l~----Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~-~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 124 (252)
T PRK14256 50 IN----RMHDLVPSARVTGKILLDDTDIYDRGVDPVSI-RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEI 124 (252)
T ss_pred HH----hcccCCCCCCCceEEEECCEEcccccCChHHh-hccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHH
Confidence 99 9872 2 25899888775543111111122 34699999998877766654332211011110 00000 00
Q ss_pred cCCceEEEEEEe----eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 228 IPGTDLEIARTA----FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 228 ~~~~~l~~~r~~----~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
.. ..+...+.. ...+..+..|||||+||+.||++|.. +|+++|||||+++| +.+...++++.+
T Consensus 125 ~~-~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~------~p~llllDEP~~gLD~~~~~~l~~~l~~~~~- 196 (252)
T PRK14256 125 VE-SSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAV------KPEVILMDEPASALDPISTLKIEELIEELKE- 196 (252)
T ss_pred HH-HHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-
Confidence 00 111111211 12346788999999999999999999 99999999999999 667778887765
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+. +++++||+++.+.+.||++..+
T Consensus 197 ~~-tiiivsH~~~~~~~~~d~i~~l 220 (252)
T PRK14256 197 KY-TIIIVTHNMQQAARVSDYTAFF 220 (252)
T ss_pred CC-cEEEEECCHHHHHhhCCEEEEE
Confidence 33 6999999999999999876443
No 192
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.93 E-value=2e-28 Score=229.19 Aligned_cols=189 Identities=21% Similarity=0.241 Sum_probs=130.9
Q ss_pred EEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC
Q psy14062 86 KSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN 165 (388)
Q Consensus 86 ksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn 165 (388)
++|+.+.+|. |+||+|.+ |++++|+||||||||||+++|+ |++ ++
T Consensus 29 ~~~~~~~il~--------~vs~~i~~----------------------Ge~~~i~G~NGsGKSTLl~~i~----Gl~-~p 73 (236)
T cd03267 29 RKYREVEALK--------GISFTIEK----------------------GEIVGFIGPNGAGKTTTLKILS----GLL-QP 73 (236)
T ss_pred cccCCeeeee--------ceeEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh----CCc-CC
Confidence 4577766654 99999999 9999999999999999999999 998 77
Q ss_pred CCCcceeehhhhhhcCccchhhhhccceeEe-cccCCCCCcceEEEEEEeccccCCCCcc-ccccCCceEEEEEEeeeCC
Q psy14062 166 GSGKSNVIDSMLFVFGYRASKIRANKLSVLM-HKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGTDLEIARTAFYDN 243 (388)
Q Consensus 166 gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~-q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~~l~~~r~~~~~~ 243 (388)
.+|++.+.+..+.. ... .....+++++ |.+..++..+..++........+..... ..... ..+...++....+
T Consensus 74 ~~G~i~~~g~~~~~---~~~-~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-~~l~~~gl~~~~~ 148 (236)
T cd03267 74 TSGEVRVAGLVPWK---RRK-KFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLD-ELSELLDLEELLD 148 (236)
T ss_pred CceEEEECCEEccc---cch-hhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHcCChhHhc
Confidence 89998887654321 111 1234689988 4445555555443321111111111110 00000 1122222222345
Q ss_pred CCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHH
Q psy14062 244 SSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELR 318 (388)
Q Consensus 244 ~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d 318 (388)
..+..|||||+||+.+|++|+. +|+++|||||+++| +.+...+.+++++...+++++||+++.+...+|
T Consensus 149 ~~~~~LS~G~~qrl~la~al~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d 222 (236)
T cd03267 149 TPVRQLSLGQRMRAEIAAALLH------EPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALAR 222 (236)
T ss_pred CChhhCCHHHHHHHHHHHHHhc------CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCC
Confidence 6788999999999999999999 99999999999999 677778887766533459999999999998887
Q ss_pred HH
Q psy14062 319 KA 320 (388)
Q Consensus 319 ~~ 320 (388)
++
T Consensus 223 ~i 224 (236)
T cd03267 223 RV 224 (236)
T ss_pred EE
Confidence 65
No 193
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=5e-28 Score=225.80 Aligned_cols=196 Identities=15% Similarity=0.219 Sum_probs=138.6
Q ss_pred EEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 77 i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.+++ ++|+++.++. ++||+|.+ |++++|+||||||||||+++|+
T Consensus 3 ~~~l~----~~~~~~~il~--------~i~~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l~- 47 (232)
T cd03300 3 LENVS----KFYGGFVALD--------GVSLDIKE----------------------GEFFTLLGPSGCGKTTLLRLIA- 47 (232)
T ss_pred EEeEE----EEeCCeeeec--------cceEEECC----------------------CCEEEEECCCCCCHHHHHHHHh-
Confidence 45555 6788766654 99999999 9999999999999999999999
Q ss_pred cccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEE
Q psy14062 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIA 236 (388)
Q Consensus 157 ~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (388)
|++ ++.+|++.++|..+.-. . ...+.+++++|++..++..+..++........+.............+...
T Consensus 48 ---g~~-~~~~G~i~~~g~~~~~~--~---~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (232)
T cd03300 48 ---GFE-TPTSGEILLDGKDITNL--P---PHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLV 118 (232)
T ss_pred ---cCC-CCCceEEEECCEEcCcC--C---hhhcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 998 77799988876544211 1 12356999999987776555543321100111100000000000122222
Q ss_pred EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHH
Q psy14062 237 RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLK 311 (388)
Q Consensus 237 r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~ 311 (388)
++..+.+..+..||+||+||+.+|++|+. +|+++|||||+++| ..+...+.+++++...++++++|+++
T Consensus 119 ~l~~~~~~~~~~lS~G~~qrl~laral~~------~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~ 192 (232)
T cd03300 119 QLEGYANRKPSQLSGGQQQRVAIARALVN------EPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE 192 (232)
T ss_pred CCchhhcCChhhCCHHHHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 33334566788999999999999999999 99999999999999 66777887777652335999999999
Q ss_pred HHHHHHHHHHH
Q psy14062 312 ALEPELRKAVN 322 (388)
Q Consensus 312 ~l~~~~d~~~~ 322 (388)
.+.+.+|++..
T Consensus 193 ~~~~~~d~i~~ 203 (232)
T cd03300 193 EALTMSDRIAV 203 (232)
T ss_pred HHHHhcCEEEE
Confidence 99999987643
No 194
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.93 E-value=6.5e-28 Score=229.90 Aligned_cols=189 Identities=13% Similarity=0.142 Sum_probs=127.9
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|+|+||+|.+ |++++|+||||||||||+++|+ |+. ++.+|++.+.+..+.-..
T Consensus 28 l~~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l~----Gl~-~p~sG~i~~~g~~~~~~~ 80 (268)
T PRK10419 28 LNNVSLSLKS----------------------GETVALLGRSGCGKSTLARLLV----GLE-SPSQGNVSWRGEPLAKLN 80 (268)
T ss_pred EeceeEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh----CCC-CCCCcEEEECCEeccccC
Confidence 4499999999 9999999999999999999999 998 778999888775442111
Q ss_pred ccchhhhhccceeEecccC--CCCCcceEEEEEE-eccccCCCCccccccCCceEEEEEEe-eeCCCCeeeeCCccccHH
Q psy14062 182 YRASKIRANKLSVLMHKSD--QVGGVSRCSVAIH-FAQIIDKPNEEYEIIPGTDLEIARTA-FYDNSSYYTLNGKKVHFK 257 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~--~~~~~~~~eV~~~-~~~~~~~~~~~~~~~~~~~l~~~r~~-~~~~~~~~~LSgGq~qr~ 257 (388)
.......++.+++++|++. .++..+..++... +....+.............+...+.. ...+..+..|||||+||+
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl 160 (268)
T PRK10419 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRV 160 (268)
T ss_pred hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHH
Confidence 1111112346999999863 3333333222110 00000100000000001122222222 134567889999999999
Q ss_pred HHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 258 EVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 258 ~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
.||++|+. +|++||||||+++| +.+...+.++.++...+++++||+++.+.+.||++...
T Consensus 161 ~laral~~------~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l 225 (268)
T PRK10419 161 CLARALAV------EPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVM 225 (268)
T ss_pred HHHHHHhc------CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEE
Confidence 99999999 99999999999999 56777888877653446999999999999998876444
No 195
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.93 E-value=8.1e-28 Score=227.44 Aligned_cols=195 Identities=16% Similarity=0.221 Sum_probs=132.9
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.+++ ++| ++.+|. |+||+|.+ |++++|+||||||||||+++
T Consensus 4 ~l~~~~l~----~~~-~~~il~--------~vsl~i~~----------------------Ge~~~l~G~nGsGKSTLl~~ 48 (254)
T PRK10418 4 QIELRNIA----LQA-AQPLVH--------GVSLTLQR----------------------GRVLALVGGSGSGKSLTCAA 48 (254)
T ss_pred EEEEeCeE----EEe-ccceec--------ceEEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 45566666 668 455544 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCC----CCCcceeehhhhhhcCccchhhhhccceeEecccC-CC-CCcceEEEEEEeccccCCCCccccc
Q psy14062 154 MLFRFNAIIGPN----GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD-QV-GGVSRCSVAIHFAQIIDKPNEEYEI 227 (388)
Q Consensus 154 i~~~~ngIiGpn----gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~-~~-~~~~~~eV~~~~~~~~~~~~~~~~~ 227 (388)
|+ |++ ++ .+|++.++|..+. ....+.+.++|++|++. .+ +..+..+....+....+..... ..
T Consensus 49 l~----Gl~-~~~~~~~~G~i~~~g~~i~-----~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 117 (254)
T PRK10418 49 AL----GIL-PAGVRQTAGRVLLDGKPVA-----PCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADD-AT 117 (254)
T ss_pred Hh----CCC-CCCCCCcCCEEEECCeecc-----ccccccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHH-HH
Confidence 99 998 55 7899887765442 11223356999999864 22 2222111110000011111000 00
Q ss_pred cCCceEEEEEEee---eCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 228 IPGTDLEIARTAF---YDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 228 ~~~~~l~~~r~~~---~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
.. ..+...++.. ..+..+..|||||+||+.||++|+. +|++||||||+++| +.+...+.++.++.
T Consensus 118 ~~-~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~------~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~ 190 (254)
T PRK10418 118 LT-AALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLC------EAPFIIADEPTTDLDVVAQARILDLLESIVQKR 190 (254)
T ss_pred HH-HHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhc------CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhc
Confidence 00 1122222221 2356788999999999999999999 99999999999999 66777888776653
Q ss_pred hhHHHHHHHhHHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
..+++++||+++.+...+|++.
T Consensus 191 g~til~~sH~~~~~~~~~d~v~ 212 (254)
T PRK10418 191 ALGMLLVTHDMGVVARLADDVA 212 (254)
T ss_pred CcEEEEEecCHHHHHHhCCEEE
Confidence 3359999999999999988763
No 196
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.93 E-value=3.1e-27 Score=215.69 Aligned_cols=168 Identities=17% Similarity=0.211 Sum_probs=125.2
Q ss_pred EEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 76 IITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 76 ~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.+.+++ ++|++..++. |+||++.+ |++++|+||||||||||+++|+
T Consensus 2 ~~~~l~----~~~~~~~~l~--------~is~~i~~----------------------Ge~~~i~G~nGsGKStLl~~l~ 47 (200)
T cd03217 2 EIKDLH----VSVGGKEILK--------GVNLTIKK----------------------GEVHALMGPNGSGKSTLAKTIM 47 (200)
T ss_pred eEEEEE----EEeCCEEeee--------ccceEECC----------------------CcEEEEECCCCCCHHHHHHHHh
Confidence 345555 6788766654 99999999 9999999999999999999999
Q ss_pred hcccEEEc-CCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEE
Q psy14062 156 FRFNAIIG-PNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLE 234 (388)
Q Consensus 156 ~~~ngIiG-pngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~ 234 (388)
|+.. ++.+|++.++|..+.-.. ....+...+++++|.+..++..+..++ +
T Consensus 48 ----G~~~~~p~~G~i~~~g~~~~~~~--~~~~~~~~i~~v~q~~~~~~~~~~~~~----------------------l- 98 (200)
T cd03217 48 ----GHPKYEVTEGEILFKGEDITDLP--PEERARLGIFLAFQYPPEIPGVKNADF----------------------L- 98 (200)
T ss_pred ----CCCcCCCCccEEEECCEECCcCC--HHHHhhCcEEEeecChhhccCccHHHH----------------------H-
Confidence 8831 567999888776443211 111223458999998665443221100 0
Q ss_pred EEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHh
Q psy14062 235 IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETD 309 (388)
Q Consensus 235 ~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~ 309 (388)
......|||||+||+.+|++|+. +|+++|||||+++| +.+...+.++++++. +++++||+
T Consensus 99 --------~~~~~~LS~G~~qrv~laral~~------~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~-tiii~sh~ 163 (200)
T cd03217 99 --------RYVNEGFSGGEKKRNEILQLLLL------EPDLAILDEPDSGLDIDALRLVAEVINKLREEGK-SVLIITHY 163 (200)
T ss_pred --------hhccccCCHHHHHHHHHHHHHhc------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCC-EEEEEecC
Confidence 11225799999999999999999 99999999999999 667777777765544 59999999
Q ss_pred HHHHHH-HHHHHH
Q psy14062 310 LKALEP-ELRKAV 321 (388)
Q Consensus 310 l~~l~~-~~d~~~ 321 (388)
++.+.. .+|++.
T Consensus 164 ~~~~~~~~~d~i~ 176 (200)
T cd03217 164 QRLLDYIKPDRVH 176 (200)
T ss_pred HHHHHHhhCCEEE
Confidence 998887 677753
No 197
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.1e-27 Score=228.93 Aligned_cols=203 Identities=14% Similarity=0.165 Sum_probs=139.9
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.++. ++|+++.+|+ +|||+|.+ |++++|+||||||||||++
T Consensus 19 ~~l~~~nl~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~IiG~nGsGKSTLl~ 64 (274)
T PRK14265 19 SVFEVEGVK----VFYGGFLALV--------DVHLKIPA----------------------KKIIAFIGPSGCGKSTLLR 64 (274)
T ss_pred ceEEEeeEE----EEeCCeEEEe--------eeeeEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 467777777 7898766654 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcC-C---CCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccccc
Q psy14062 153 SMLFRFNAIIGP-N---GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEII 228 (388)
Q Consensus 153 ~i~~~~ngIiGp-n---gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~ 228 (388)
+|+ |+..+ + .+|++.+.|..+.-.... ....++.++|+||++..++. +..++........+.........
T Consensus 65 ~l~----Gl~~~~~~~~~~G~i~~~g~~l~~~~~~-~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~ 138 (274)
T PRK14265 65 CFN----RMNDLIPGAKVEGRLLYRDRNIYDSQIN-SVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELV 138 (274)
T ss_pred HHh----cccccccCCCcCceEEECCEecccccch-hHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCchHHHHHHH
Confidence 999 98753 2 589988877544211111 11223569999999876643 43332211111000000000000
Q ss_pred CCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 229 PGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 229 ~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
. ..+...++ ....+.++..|||||+||+.||++|+. +|++||||||+++| +.+...+.++++ +
T Consensus 139 ~-~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~ 210 (274)
T PRK14265 139 E-DSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAM------KPDVLLMDEPCSALDPISTRQVEELCLELKE-Q 210 (274)
T ss_pred H-HHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhh------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C
Confidence 0 01111111 122356788999999999999999999 99999999999999 677778877764 3
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKAVNFL 324 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~~~y~ 324 (388)
.+|+++||+++.+.+.+|++..+.
T Consensus 211 -~tiii~sH~~~~~~~~~d~i~~l~ 234 (274)
T PRK14265 211 -YTIIMVTHNMQQASRVADWTAFFN 234 (274)
T ss_pred -CEEEEEeCCHHHHHHhCCEEEEEe
Confidence 369999999999999999876653
No 198
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.93 E-value=1.1e-27 Score=242.35 Aligned_cols=208 Identities=18% Similarity=0.200 Sum_probs=146.7
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+.+.+++|+ ++|..... + ..+|+||||+|.+ |+++||||.|||||||+.+
T Consensus 4 ~lL~V~nL~----v~~~~~~~--~--~~~v~~vsf~v~~----------------------GE~lgIvGESGsGKSt~a~ 53 (539)
T COG1123 4 PLLEVENLT----VEFATDGG--R--VPAVRDVSFEVEP----------------------GEILGIVGESGSGKSTLAL 53 (539)
T ss_pred ceEEEeceE----EEEecCCc--c--eeeeecceEEecC----------------------CcEEEEEcCCCCCHHHHHH
Confidence 356777777 55543310 0 1256799999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCC----CCcceeehhhhhhcCcc-chhhhhccceeEecccCC--CCCcceEEEEEEeccccCC-CCcc
Q psy14062 153 SMLFRFNAIIGPNG----SGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSDQ--VGGVSRCSVAIHFAQIIDK-PNEE 224 (388)
Q Consensus 153 ~i~~~~ngIiGpng----SGKs~i~da~i~vlg~~-~~~lr~~~i~~l~q~~~~--~~~~~~~eV~~~~~~~~~~-~~~~ 224 (388)
+|. |++ |++ +|++.+.|.++.-+... ...+|++.|+++||++.. -|..+..+...-....+.. ...+
T Consensus 54 ~i~----gll-~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~e 128 (539)
T COG1123 54 ALM----GLL-PEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAE 128 (539)
T ss_pred HHh----ccC-CCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHH
Confidence 999 998 554 79999999866544443 345788999999998642 1212211100000011111 1111
Q ss_pred ccccCCceEEEEEEeeeC--CCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHH
Q psy14062 225 YEIIPGTDLEIARTAFYD--NSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERT 297 (388)
Q Consensus 225 ~~~~~~~~l~~~r~~~~~--~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~ 297 (388)
........+...++.... ++++..|||||+||+.||++|+. +|++||+||||++| .+|.++|+++++
T Consensus 129 a~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~------~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~ 202 (539)
T COG1123 129 ARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALAL------KPKLLIADEPTTALDVTTQAQILDLLKDLQR 202 (539)
T ss_pred HHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhC------CCCEEEECCCccccCHHHHHHHHHHHHHHHH
Confidence 110001122222332222 45899999999999999999999 99999999999999 889999999998
Q ss_pred HhhhHHHHHHHhHHHHHHHHHHHH
Q psy14062 298 EKLTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 298 e~~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
+....++++|||+..+++.||++.
T Consensus 203 e~g~a~l~ITHDl~Vva~~aDrv~ 226 (539)
T COG1123 203 ELGMAVLFITHDLGVVAELADRVV 226 (539)
T ss_pred HcCcEEEEEcCCHHHHHHhcCeEE
Confidence 877779999999999999999863
No 199
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.4e-27 Score=225.39 Aligned_cols=201 Identities=15% Similarity=0.226 Sum_probs=137.8
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+.+.+.+++ ++|+++.++. ++||+|.+ |++++|+||||||||||++
T Consensus 3 ~~l~~~~l~----~~~~~~~il~--------~~s~~i~~----------------------G~~~~i~G~nGsGKSTLl~ 48 (251)
T PRK14249 3 PKIKIRGVN----FFYHKHQVLK--------NINMDFPE----------------------RQITAIIGPSGCGKSTLLR 48 (251)
T ss_pred ceEEEEEEE----EEECCeeEec--------ceEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 456677777 6788766655 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCC-----CCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCC-ccc-
Q psy14062 153 SMLFRFNAIIGPNG-----SGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPN-EEY- 225 (388)
Q Consensus 153 ~i~~~~ngIiGpng-----SGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~-~~~- 225 (388)
+|+ |+. ++. +|.+.+.|..+.......... ++.++++||++..++. +..++........+... ...
T Consensus 49 ~l~----Gl~-~~~~~~~~~G~v~~~g~~~~~~~~~~~~~-~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~ 121 (251)
T PRK14249 49 ALN----RMN-DIVSGARLEGAVLLDNENIYSPNLDVVNL-RKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLD 121 (251)
T ss_pred HHh----ccc-CccccCCcccEEEECCEEccccccChHHh-hceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHH
Confidence 999 988 443 699888775442111111122 3569999999887654 44333221111111110 000
Q ss_pred cccCCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHH
Q psy14062 226 EIIPGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEER 296 (388)
Q Consensus 226 ~~~~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~ 296 (388)
.... ..+...++ ....+..+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.++.
T Consensus 122 ~~~~-~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 194 (251)
T PRK14249 122 EVVE-KSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAI------EPEVILMDEPCSALDPVSTMRIEELMQELK 194 (251)
T ss_pred HHHH-HHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc------CCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 0000 00000111 123457789999999999999999999 99999999999999 66667777764
Q ss_pred HHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 297 TEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 297 ~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
++. +++++||+++.+.+.+|++...
T Consensus 195 -~~~-tilivsh~~~~~~~~~d~i~~l 219 (251)
T PRK14249 195 -QNY-TIAIVTHNMQQAARASDWTGFL 219 (251)
T ss_pred -cCC-EEEEEeCCHHHHHhhCCEEEEE
Confidence 343 6999999999999998877444
No 200
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.93 E-value=6.4e-28 Score=250.75 Aligned_cols=204 Identities=13% Similarity=0.152 Sum_probs=141.5
Q ss_pred CcEEEEEEEeeceEEec-----------CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEc
Q psy14062 73 PRLIITKIVAFNFKSYA-----------GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIG 141 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~-----------~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiG 141 (388)
+++.+.+++ ++|+ ++.+| ++|||+|.+ |++++|+|
T Consensus 274 ~~l~~~~l~----~~~~~~~~~~~~~~~~~~il--------~~isl~i~~----------------------Ge~~~i~G 319 (529)
T PRK15134 274 PLLDVEQLQ----VAFPIRKGILKRTVDHNVVV--------KNISFTLRP----------------------GETLGLVG 319 (529)
T ss_pred CcccccCcE----EEeecCccccccccccceee--------ecceeEEcC----------------------CCEEEEEC
Confidence 456666666 6785 23444 499999999 99999999
Q ss_pred CCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccC--CCCCcceEEEEEEeccccC
Q psy14062 142 PNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD--QVGGVSRCSVAIHFAQIID 219 (388)
Q Consensus 142 pnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~--~~~~~~~~eV~~~~~~~~~ 219 (388)
|||||||||+++|+ |++ | .+|++.+.|..+...........+.+++|+||++. .++..++.++.......+.
T Consensus 320 ~nGsGKSTLlk~l~----Gl~-~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~ 393 (529)
T PRK15134 320 ESGSGKSTTGLALL----RLI-N-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQ 393 (529)
T ss_pred CCCCCHHHHHHHHh----CcC-C-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhcc
Confidence 99999999999999 998 7 69998887765432111111112346999999863 5555555443321101111
Q ss_pred --CCCcc-ccccCCceEEEEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHh
Q psy14062 220 --KPNEE-YEIIPGTDLEIARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYG 290 (388)
Q Consensus 220 --~~~~~-~~~~~~~~l~~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~ 290 (388)
..... ...+ ...+...++. ...++++..|||||+||+.||++|+. +|++|||||||++| +.+..
T Consensus 394 ~~~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~------~p~llllDEPt~~LD~~~~~~l~~ 466 (529)
T PRK15134 394 PTLSAAQREQQV-IAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALIL------KPSLIILDEPTSSLDKTVQAQILA 466 (529)
T ss_pred ccCChHHHHHHH-HHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhC------CCCEEEeeCCccccCHHHHHHHHH
Confidence 01000 0111 1122222332 23467889999999999999999999 99999999999999 77888
Q ss_pred hhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 291 KYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 291 ~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
.+.+++++...+|+++||+++.+...||++...
T Consensus 467 ~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l 499 (529)
T PRK15134 467 LLKSLQQKHQLAYLFISHDLHVVRALCHQVIVL 499 (529)
T ss_pred HHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 888887663335999999999999999987544
No 201
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.2e-27 Score=226.88 Aligned_cols=203 Identities=17% Similarity=0.198 Sum_probs=138.2
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|+++.++. ++||+|.+ |++++|+||||||||||++
T Consensus 11 ~~l~i~~l~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~l~G~nGsGKSTLl~ 56 (259)
T PRK14274 11 EVYQINGMN----LWYGQHHALK--------NINLSIPE----------------------NEVTAIIGPSGCGKSTFIK 56 (259)
T ss_pred ceEEEeeEE----EEECCeeeEE--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 356666776 6798766654 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcC-C---CCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCC-CCccccc
Q psy14062 153 SMLFRFNAIIGP-N---GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK-PNEEYEI 227 (388)
Q Consensus 153 ~i~~~~ngIiGp-n---gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~-~~~~~~~ 227 (388)
+|+ |++-| + .+|.+.++|..+.......... ++.++|++|++..++. +..++..+.....+. .......
T Consensus 57 ~l~----G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~-~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~ 130 (259)
T PRK14274 57 TLN----LMIQMVPNVKLTGEMNYNGSNILKGKVDLVEL-RKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQE 130 (259)
T ss_pred HHH----hhccCCCCCCCceEEEECCEEccccccCHHHH-hhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHH
Confidence 999 98742 2 5899888776543111111122 3469999999877654 444332211111111 0010000
Q ss_pred cCCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 228 IPGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 228 ~~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
.....+...++ ....+..+..|||||+||+.||++|+. +|+++|||||+++| ..+...+.++++
T Consensus 131 ~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~- 203 (259)
T PRK14274 131 IVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALAT------NPDVLLMDEPTSALDPVSTRKIEELILKLKE- 203 (259)
T ss_pred HHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-
Confidence 00001111111 112356788999999999999999999 99999999999999 667777777754
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+. +++++||+++.+.+.+|++...
T Consensus 204 ~~-tiiivtH~~~~~~~~~d~i~~l 227 (259)
T PRK14274 204 KY-TIVIVTHNMQQAARVSDQTAFF 227 (259)
T ss_pred CC-EEEEEEcCHHHHHHhCCEEEEE
Confidence 43 5999999999999998876443
No 202
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.93 E-value=6.3e-28 Score=225.89 Aligned_cols=196 Identities=17% Similarity=0.225 Sum_probs=140.0
Q ss_pred EEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 77 i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.++. ++|+++.++. |+||++.+ |++++|+||||||||||+++|+
T Consensus 3 i~~l~----~~~~~~~il~--------~is~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~i~- 47 (237)
T TIGR00968 3 IANIS----KRFGSFQALD--------DVNLEVPT----------------------GSLVALLGPSGSGKSTLLRIIA- 47 (237)
T ss_pred EEEEE----EEECCeeeee--------eEEEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh-
Confidence 45555 5688776654 99999999 9999999999999999999999
Q ss_pred cccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCc-cccccCCceEEE
Q psy14062 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNE-EYEIIPGTDLEI 235 (388)
Q Consensus 157 ~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~-~~~~~~~~~l~~ 235 (388)
|++ ++.+|++.+++..+.- . . .+.+.+++++|.+..++..+..++........+.... ..... ...+..
T Consensus 48 ---G~~-~~~~G~i~i~g~~~~~--~--~-~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~-~~~l~~ 117 (237)
T TIGR00968 48 ---GLE-QPDSGRIRLNGQDATR--V--H-ARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARV-EELLEL 117 (237)
T ss_pred ---cCC-CCCceEEEECCEEcCc--C--C-hhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHH-HHHHHH
Confidence 998 7789998877654321 1 1 1235699999998877666655433211111111100 00001 112222
Q ss_pred EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhH
Q psy14062 236 ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDL 310 (388)
Q Consensus 236 ~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l 310 (388)
.++..+.++.+..||+||+||+.+|++|+. +|+++|+|||+++| +.+...+.+++++...+++++||++
T Consensus 118 ~~l~~~~~~~~~~lS~G~~qrl~laral~~------~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~ 191 (237)
T TIGR00968 118 VQLEGLGDRYPNQLSGGQRQRVALARALAV------EPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ 191 (237)
T ss_pred cCCHhHhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 233334467788999999999999999999 99999999999999 6777788877665233599999999
Q ss_pred HHHHHHHHHHHHH
Q psy14062 311 KALEPELRKAVNF 323 (388)
Q Consensus 311 ~~l~~~~d~~~~y 323 (388)
..+.+.+|++..+
T Consensus 192 ~~~~~~~d~i~~l 204 (237)
T TIGR00968 192 EEAMEVADRIVVM 204 (237)
T ss_pred HHHHhhcCEEEEE
Confidence 9999999886433
No 203
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=6.4e-28 Score=222.26 Aligned_cols=192 Identities=16% Similarity=0.177 Sum_probs=133.8
Q ss_pred EEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcc
Q psy14062 79 KIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRF 158 (388)
Q Consensus 79 ~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ 158 (388)
+|+ |+|+++.+ ||||+|.+ ++++|+||||||||||+++|+
T Consensus 5 ~l~----~~~~~~~~----------~vsl~i~~-----------------------e~~~i~G~nGsGKSTLl~~l~--- 44 (214)
T cd03297 5 DIE----KRLPDFTL----------KIDFDLNE-----------------------EVTGIFGASGAGKSTLLRCIA--- 44 (214)
T ss_pred eee----EecCCeee----------CceEEEcc-----------------------eeEEEECCCCCCHHHHHHHHh---
Confidence 566 88988543 78888877 699999999999999999999
Q ss_pred cEEEcCCCCCcceeehhhhhhcCcc-chhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEE
Q psy14062 159 NAIIGPNGSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIAR 237 (388)
Q Consensus 159 ngIiGpngSGKs~i~da~i~vlg~~-~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r 237 (388)
|++ ++.+|++.+.|..+...... ......+.+++++|++..++..+..++.......+. ........ ...+...+
T Consensus 45 -G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-~~~~~~~~-~~~l~~~~ 120 (214)
T cd03297 45 -GLE-KPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKR-NREDRISV-DELLDLLG 120 (214)
T ss_pred -CCC-CCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCC-HHHHHHHH-HHHHHHcC
Confidence 998 77899988877644211110 011123469999999877766665443221111100 00000000 01122222
Q ss_pred EeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHH
Q psy14062 238 TAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKA 312 (388)
Q Consensus 238 ~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~ 312 (388)
.....+..+..|||||+||+.||++|+. +|+++||||||++| +.+...+.+++++...+++++||+++.
T Consensus 121 l~~~~~~~~~~LS~G~~qrv~la~al~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 194 (214)
T cd03297 121 LDHLLNRYPAQLSGGEKQRVALARALAA------QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSE 194 (214)
T ss_pred CHhHhhcCcccCCHHHHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHH
Confidence 2223456788999999999999999999 99999999999999 777778888776533359999999999
Q ss_pred HHHHHHHH
Q psy14062 313 LEPELRKA 320 (388)
Q Consensus 313 l~~~~d~~ 320 (388)
+...+|++
T Consensus 195 ~~~~~d~i 202 (214)
T cd03297 195 AEYLADRI 202 (214)
T ss_pred HHHhcCEE
Confidence 99888865
No 204
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.2e-27 Score=228.51 Aligned_cols=201 Identities=18% Similarity=0.205 Sum_probs=137.8
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|++..++. |+||+|.+ |++++|+||||||||||++
T Consensus 23 ~~l~~~~l~----~~~~~~~il~--------~vsl~i~~----------------------Ge~~~I~G~nGsGKSTLl~ 68 (271)
T PRK14238 23 VVFDTQNLN----LWYGEDHALK--------NINLDIHE----------------------NEVTAIIGPSGCGKSTYIK 68 (271)
T ss_pred eEEEEeeeE----EEECCcceee--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 456777777 6788766654 99999999 9999999999999999999
Q ss_pred hhhhcccEEEc--C--CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCc-c-cc
Q psy14062 153 SMLFRFNAIIG--P--NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNE-E-YE 226 (388)
Q Consensus 153 ~i~~~~ngIiG--p--ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~-~-~~ 226 (388)
+|+ |++- | +.+|++.+.|..+.-.... ...+.+.++|++|++..++. +..++........+.... . ..
T Consensus 69 ~i~----Gl~~~~~~~~~~G~i~~~g~~~~~~~~~-~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~ 142 (271)
T PRK14238 69 TLN----RMVELVPSVKTTGKILYRDQNIFDKSYS-VEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDE 142 (271)
T ss_pred HHH----hhccCCCCCCCceeEEECCEEccccccc-HHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHH
Confidence 999 9883 2 5799988877544211111 11223569999999876653 443322211111111110 0 00
Q ss_pred ccCCceEEEE----EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHH
Q psy14062 227 IIPGTDLEIA----RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERT 297 (388)
Q Consensus 227 ~~~~~~l~~~----r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~ 297 (388)
.+. ..+... ......+.++..|||||+||+.||++|+. +|+++|||||+++| ..+...+.++.+
T Consensus 143 ~~~-~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 215 (271)
T PRK14238 143 IVE-KSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAI------EPDVILMDEPTSALDPISTLKVEELVQELKK 215 (271)
T ss_pred HHH-HHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHc------CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc
Confidence 000 000000 11122356788999999999999999999 99999999999999 666777777754
Q ss_pred HhhhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 298 EKLTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 298 e~~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
+. +++++||+++.+.+.||++..
T Consensus 216 -~~-tiiivsH~~~~i~~~~d~i~~ 238 (271)
T PRK14238 216 -DY-SIIIVTHNMQQAARISDKTAF 238 (271)
T ss_pred -CC-EEEEEEcCHHHHHHhCCEEEE
Confidence 43 599999999999999987643
No 205
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.93 E-value=1.2e-27 Score=217.79 Aligned_cols=183 Identities=15% Similarity=0.137 Sum_probs=129.5
Q ss_pred EEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 76 IITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 76 ~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.+.+++ ++|++..+++ ++||+|.+ |++++|+||||||||||+++|+
T Consensus 2 ~~~~l~----~~~~~~~~l~--------~vsl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l~ 47 (198)
T TIGR01189 2 AARNLA----CSRGERMLFE--------GLSFTLNA----------------------GEALQVTGPNGIGKTTLLRILA 47 (198)
T ss_pred EEEEEE----EEECCEEEEe--------eeeEEEcC----------------------CcEEEEECCCCCCHHHHHHHHh
Confidence 345566 6788777655 99999999 9999999999999999999999
Q ss_pred hcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEE
Q psy14062 156 FRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEI 235 (388)
Q Consensus 156 ~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~ 235 (388)
|++ ++.+|++.+.+..+... ...+.+.+++++|.+..++..+..++...+...... .. .... ..+..
T Consensus 48 ----G~~-~~~~G~i~~~g~~~~~~----~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~--~~-~~~~-~~l~~ 114 (198)
T TIGR01189 48 ----GLL-RPDSGEVRWNGTALAEQ----RDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGG--AQ-RTIE-DALAA 114 (198)
T ss_pred ----CCC-CCCccEEEECCEEcccc----hHHhhhheEEeccCcccccCCcHHHHHHHHHHHcCC--cH-HHHH-HHHHH
Confidence 988 77899988877544211 112235689999987666555554432211111110 00 0000 11222
Q ss_pred EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhH
Q psy14062 236 ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDL 310 (388)
Q Consensus 236 ~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l 310 (388)
.++..+.+..+..|||||+||+.||++|.. +|+++|||||+++| +.+...+.++++++. +++++||+.
T Consensus 115 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-tii~~sH~~ 187 (198)
T TIGR01189 115 VGLTGFEDLPAAQLSAGQQRRLALARLWLS------RAPLWILDEPTTALDKAGVALLAGLLRAHLARGG-IVLLTTHQD 187 (198)
T ss_pred cCCHHHhcCChhhcCHHHHHHHHHHHHHhc------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC-EEEEEEccc
Confidence 233334467788999999999999999999 99999999999999 667777777765555 599999986
Q ss_pred HH
Q psy14062 311 KA 312 (388)
Q Consensus 311 ~~ 312 (388)
..
T Consensus 188 ~~ 189 (198)
T TIGR01189 188 LG 189 (198)
T ss_pred cc
Confidence 43
No 206
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=7.6e-28 Score=212.15 Aligned_cols=198 Identities=19% Similarity=0.232 Sum_probs=151.4
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+.+.+.+++ .||++..+++ ++||++.+ |+.-+|||||||||||++.
T Consensus 4 ~iL~~~~vs----VsF~GF~Aln--------~ls~~v~~----------------------Gelr~lIGpNGAGKTT~mD 49 (249)
T COG4674 4 IILYLDGVS----VSFGGFKALN--------DLSFSVDP----------------------GELRVLIGPNGAGKTTLMD 49 (249)
T ss_pred ceEEEeceE----EEEcceeeee--------eeEEEecC----------------------CeEEEEECCCCCCceeeee
Confidence 467778888 8999877765 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeeh-hhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEE--------eccccC-CCC
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVID-SMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIH--------FAQIID-KPN 222 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~d-a~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~--------~~~~~~-~~~ 222 (388)
.|+ |-. ++..|++.+.| .++. +.+...+.+..||--||.|..|...++.++.-. |..+.. ...
T Consensus 50 ~It----GKt-rp~~G~v~f~g~~dl~--~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~ 122 (249)
T COG4674 50 VIT----GKT-RPQEGEVLFDGDTDLT--KLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRA 122 (249)
T ss_pred eec----ccC-CCCcceEEEcCchhhc--cCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcCh
Confidence 999 988 67799988877 3332 333344455678888999999988887654311 111111 111
Q ss_pred ccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHH
Q psy14062 223 EEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERT 297 (388)
Q Consensus 223 ~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~ 297 (388)
.....++ ..+.+.++....+.....||-||+|+++|...+++ +|.+|++|||+++| +...++++.++.
T Consensus 123 ~e~~rid-e~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q------~P~lLLlDEPvAGMTd~Et~~taeLl~~la~ 195 (249)
T COG4674 123 EERRRID-ELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQ------DPKLLLLDEPVAGMTDAETEKTAELLKSLAG 195 (249)
T ss_pred hHHHHHH-HHHHHcccchhhhhhhhhhccchhhhhhhheeecc------CCcEEEecCccCCCcHHHHHHHHHHHHHHhc
Confidence 1111122 24555667667788899999999999999999999 99999999999999 556668888776
Q ss_pred HhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 298 EKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 298 e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
.. .|++|+|||..++++++++
T Consensus 196 ~h--silVVEHDM~Fvr~~A~~V 216 (249)
T COG4674 196 KH--SILVVEHDMGFVREIADKV 216 (249)
T ss_pred Cc--eEEEEeccHHHHHHhhhee
Confidence 54 5899999999999998765
No 207
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.93 E-value=3.6e-27 Score=211.73 Aligned_cols=158 Identities=20% Similarity=0.319 Sum_probs=119.9
Q ss_pred EEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC
Q psy14062 86 KSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN 165 (388)
Q Consensus 86 ksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn 165 (388)
++|++..++. ++||++.+ |++++|+||||||||||+++|+ |++ ++
T Consensus 7 ~~~~~~~~l~--------~~~~~i~~----------------------G~~~~l~G~nGsGKStLl~~i~----G~~-~~ 51 (180)
T cd03214 7 VGYGGRTVLD--------DLSLSIEA----------------------GEIVGILGPNGAGKSTLLKTLA----GLL-KP 51 (180)
T ss_pred EEECCeeeEe--------eeEEEECC----------------------CCEEEEECCCCCCHHHHHHHHh----CCC-CC
Confidence 5687765554 99999999 9999999999999999999999 998 77
Q ss_pred CCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCC
Q psy14062 166 GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSS 245 (388)
Q Consensus 166 gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~ 245 (388)
.+|++.+.+..+.. ..... +...++++|| .+ ...+ +..+.+..
T Consensus 52 ~~G~v~~~g~~~~~--~~~~~-~~~~i~~~~q---------------~l-~~~g------------------l~~~~~~~ 94 (180)
T cd03214 52 SSGEILLDGKDLAS--LSPKE-LARKIAYVPQ---------------AL-ELLG------------------LAHLADRP 94 (180)
T ss_pred CCcEEEECCEECCc--CCHHH-HHHHHhHHHH---------------HH-HHcC------------------CHhHhcCC
Confidence 89998887654321 11112 2345888877 11 1001 01112345
Q ss_pred eeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 246 YYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 246 ~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
+..|||||+||+.+|++|+. +|+++|||||+++| +.+...+.+++++...+++++||+++.+.+.+|++
T Consensus 95 ~~~LS~G~~qrl~laral~~------~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~ 168 (180)
T cd03214 95 FNELSGGERQRVLLARALAQ------EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRV 168 (180)
T ss_pred cccCCHHHHHHHHHHHHHhc------CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 77899999999999999999 99999999999999 66777777776652235999999999998888765
Q ss_pred H
Q psy14062 321 V 321 (388)
Q Consensus 321 ~ 321 (388)
.
T Consensus 169 ~ 169 (180)
T cd03214 169 I 169 (180)
T ss_pred E
Confidence 3
No 208
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.3e-27 Score=225.33 Aligned_cols=202 Identities=15% Similarity=0.183 Sum_probs=138.1
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ +.|+++.++. ||||+|.+ |++++|+||||||||||++
T Consensus 2 ~~l~~~~~~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~ 47 (250)
T PRK14245 2 VKIDARDVN----FWYGDFHALK--------GISMEIEE----------------------KSVVAFIGPSGCGKSTFLR 47 (250)
T ss_pred cEEEEEEEE----EEECCEeEEe--------eeeEEEeC----------------------CCEEEEECCCCCCHHHHHH
Confidence 456777777 7788766654 99999999 9999999999999999999
Q ss_pred hhhhcccEEEc--CC--CCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-c-c
Q psy14062 153 SMLFRFNAIIG--PN--GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-Y-E 226 (388)
Q Consensus 153 ~i~~~~ngIiG--pn--gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~-~ 226 (388)
+|+ |+.| |+ .+|++.++|..+.-.... ....++.++|++|++..++ .+..++........+..... . .
T Consensus 48 ~i~----Gl~~~~~~~~~~G~i~~~g~~~~~~~~~-~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~ 121 (250)
T PRK14245 48 LFN----RMNDLIPATRLEGEIRIDGRNIYDKGVQ-VDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQ 121 (250)
T ss_pred HHh----hhhcccCCCCCceEEEECCEeccccccc-HHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHH
Confidence 999 8743 44 489988877644311111 1122346999999987665 34433221111111100000 0 0
Q ss_pred ccCCceEEEEEEe----eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHH
Q psy14062 227 IIPGTDLEIARTA----FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERT 297 (388)
Q Consensus 227 ~~~~~~l~~~r~~----~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~ 297 (388)
... ..+...++. ...+..+..|||||+||+.||++|+. +|+++|||||+++| +.+...++++.+
T Consensus 122 ~~~-~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 194 (250)
T PRK14245 122 RVE-ETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAV------SPSVLLMDEPASALDPISTAKVEELIHELKK 194 (250)
T ss_pred HHH-HHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhc------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 000 111111111 12356788999999999999999999 99999999999999 667778877743
Q ss_pred HhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 298 EKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 298 e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+. +++++||++..+.+.+|++..+
T Consensus 195 -~~-tiiivtH~~~~~~~~~d~v~~l 218 (250)
T PRK14245 195 -DY-TIVIVTHNMQQAARVSDKTAFF 218 (250)
T ss_pred -CC-eEEEEeCCHHHHHhhCCEEEEE
Confidence 43 5999999999999999886544
No 209
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2e-27 Score=223.68 Aligned_cols=197 Identities=15% Similarity=0.156 Sum_probs=136.0
Q ss_pred EEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 76 IITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 76 ~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.+.+++ +.|+++.++. |+||+|.+ |++++|+||||||||||+++|+
T Consensus 4 ~~~~l~----~~~~~~~~l~--------~isl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l~ 49 (246)
T PRK14269 4 KTTNLN----LFYGKKQALF--------DINMQIEQ----------------------NKITALIGASGCGKSTFLRCFN 49 (246)
T ss_pred eeeeeE----EEECCEeeee--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh
Confidence 445555 6798766654 99999999 9999999999999999999999
Q ss_pred hcccEEEc--CCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCC---CCccccccCC
Q psy14062 156 FRFNAIIG--PNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK---PNEEYEIIPG 230 (388)
Q Consensus 156 ~~~ngIiG--pngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~---~~~~~~~~~~ 230 (388)
|++. ++.+|++.++|..+.- ...... ++.++|+||++..++ .+..++..+.....+. .........
T Consensus 50 ----Gl~~~~~~~~G~i~~~g~~i~~--~~~~~~-~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~- 120 (246)
T PRK14269 50 ----RMNDKIAKIDGLVEIEGKDVKN--QDVVAL-RKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVV- 120 (246)
T ss_pred ----cccCCCCCCceEEEECCEeccc--CCHHHH-hhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHH-
Confidence 9874 2579998887765431 111222 346999999987775 3544433221111110 000000000
Q ss_pred ceEEEEEEe----eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhh
Q psy14062 231 TDLEIARTA----FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLT 301 (388)
Q Consensus 231 ~~l~~~r~~----~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~ 301 (388)
..+...++. ...+..+..|||||+||+.+|++|+. +|+++|||||+++| ..+...+.++.. +.
T Consensus 121 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~------~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~- 192 (246)
T PRK14269 121 DCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAI------KPKLLLLDEPTSALDPISSGVIEELLKELSH-NL- 192 (246)
T ss_pred HHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CC-
Confidence 111221221 12345678899999999999999999 99999999999999 666667777654 44
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q psy14062 302 RVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 302 ~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+++++||+++.+.+.+|++...
T Consensus 193 tiii~tH~~~~~~~~~d~i~~l 214 (246)
T PRK14269 193 SMIMVTHNMQQGKRVADYTAFF 214 (246)
T ss_pred EEEEEecCHHHHHhhCcEEEEE
Confidence 5999999999999998876443
No 210
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=6e-27 Score=216.60 Aligned_cols=180 Identities=13% Similarity=0.175 Sum_probs=142.2
Q ss_pred cccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCcc
Q psy14062 104 QISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYR 183 (388)
Q Consensus 104 ~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~ 183 (388)
+++|.++. ..++||-|+||||||||+++|+ |++ .+..|.+.++|..++.....
T Consensus 16 ~a~~~~p~----------------------~GvTAlFG~SGsGKTslin~Ia----GL~-rPdeG~I~lngr~L~Ds~k~ 68 (352)
T COG4148 16 DANFTLPA----------------------RGITALFGPSGSGKTSLINMIA----GLT-RPDEGRIELNGRVLVDAEKG 68 (352)
T ss_pred EEeccCCC----------------------CceEEEecCCCCChhhHHHHHh----ccC-CccccEEEECCEEeecccCC
Confidence 78899888 7899999999999999999999 999 67799999988755432222
Q ss_pred ch-hhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHH
Q psy14062 184 AS-KIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKV 262 (388)
Q Consensus 184 ~~-~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~a 262 (388)
.. ....+++|||||+..+||.+++.-+..+- .+.. ....++ ..+.+.+.....++.+..||||++||++|+||
T Consensus 69 i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG-~~~~-~~~~fd----~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRA 142 (352)
T COG4148 69 IFLPPEKRRIGYVFQDARLFPHYTVRGNLRYG-MWKS-MRAQFD----QLVALLGIEHLLDRYPGTLSGGEKQRVAIGRA 142 (352)
T ss_pred cccChhhheeeeEeeccccccceEEecchhhh-hccc-chHhHH----HHHHHhCcHHHHhhCCCccCcchhhHHHHHHH
Confidence 11 12345699999999999999987654332 1111 011111 13334455566788999999999999999999
Q ss_pred HHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 263 LRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 263 L~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
|.. .|++|+||||.++| .+++-.+..++++-..-|+.|||.++++.+.+|+++-
T Consensus 143 LLt------~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~ 201 (352)
T COG4148 143 LLT------APELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVV 201 (352)
T ss_pred Hhc------CCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEE
Confidence 999 99999999999999 8889999999998777799999999999999998643
No 211
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.6e-27 Score=224.72 Aligned_cols=201 Identities=14% Similarity=0.212 Sum_probs=136.4
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.+++ ++|+++.++. |+||+|.+ |++++|+||||||||||+++
T Consensus 3 ~l~~~~l~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~ 48 (250)
T PRK14240 3 KISVKDLD----LFYGDFQALK--------KINLDIEE----------------------NQVTALIGPSGCGKSTFLRT 48 (250)
T ss_pred eEEEEEEE----EEECCceeee--------cceEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 35566666 7798766654 99999999 99999999999999999999
Q ss_pred hhhcccEEEcC-C---CCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCC-ccc-cc
Q psy14062 154 MLFRFNAIIGP-N---GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPN-EEY-EI 227 (388)
Q Consensus 154 i~~~~ngIiGp-n---gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~-~~~-~~ 227 (388)
|+ |+..+ + .+|++.+.|..+.......... ++.+++++|++..++ .+..++........+... ... ..
T Consensus 49 i~----G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~ 122 (250)
T PRK14240 49 LN----RMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL-RKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEI 122 (250)
T ss_pred Hh----ccccccCCCCCceEEEECCEEccccccchHHH-hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99 98632 2 5899888776543111111122 346999999987665 444433221111111100 000 00
Q ss_pred cCCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 228 IPGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 228 ~~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
.. ..+...+. ....+.++..|||||+||++||++|.. +|+++|||||+++| ..+...+.++.+
T Consensus 123 ~~-~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~- 194 (250)
T PRK14240 123 VE-KSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAV------EPEVLLMDEPTSALDPISTLKIEELIQELKK- 194 (250)
T ss_pred HH-HHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-
Confidence 00 00111111 112356788999999999999999999 99999999999999 666777777754
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+. +++++||+++.+.+.+|++...
T Consensus 195 ~~-tiii~sH~~~~~~~~~d~v~~l 218 (250)
T PRK14240 195 DY-TIVIVTHNMQQASRISDKTAFF 218 (250)
T ss_pred CC-eEEEEEeCHHHHHhhCCEEEEE
Confidence 43 5999999999999998876443
No 212
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=9.9e-27 Score=212.72 Aligned_cols=159 Identities=9% Similarity=0.044 Sum_probs=119.2
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcC---CCCCcceeehhhhh
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGP---NGSGKSNVIDSMLF 178 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGp---ngSGKs~i~da~i~ 178 (388)
|+++||+|.+ |++++|+||||||||||+++|+ |++ + +.+|.+.+++..+.
T Consensus 23 l~~~s~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l~----G~~-~~~~~~~G~i~i~g~~~~ 75 (202)
T cd03233 23 LKDFSGVVKP----------------------GEMVLVLGRPGSGCSTLLKALA----NRT-EGNVSVEGDIHYNGIPYK 75 (202)
T ss_pred eeeEEEEECC----------------------CcEEEEECCCCCCHHHHHHHhc----ccC-CCCCCcceEEEECCEECc
Confidence 4599999999 9999999999999999999999 998 5 67999888775443
Q ss_pred hcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHH
Q psy14062 179 VFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKE 258 (388)
Q Consensus 179 vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~ 258 (388)
.. ...+.+.+++++|++..++..++.++...... . . .+..+..||+||+||+.
T Consensus 76 ~~----~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~----------------~---~----~~~~~~~LS~Ge~qrl~ 128 (202)
T cd03233 76 EF----AEKYPGEIIYVSEEDVHFPTLTVRETLDFALR----------------C---K----GNEFVRGISGGERKRVS 128 (202)
T ss_pred cc----hhhhcceEEEEecccccCCCCcHHHHHhhhhh----------------h---c----cccchhhCCHHHHHHHH
Confidence 11 11223468999998776665554432211100 0 0 34567789999999999
Q ss_pred HHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH-HHHhHHHHHHHHHHH
Q psy14062 259 VAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL-VETDLKALEPELRKA 320 (388)
Q Consensus 259 Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~-vtH~l~~l~~~~d~~ 320 (388)
+|++|+. +|+++|||||+++| +.+...+.++.++...++++ ++|+.+.+.+.+|++
T Consensus 129 laral~~------~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i 190 (202)
T cd03233 129 IAEALVS------RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKV 190 (202)
T ss_pred HHHHHhh------CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeE
Confidence 9999999 99999999999999 66777888876653323444 566678888888764
No 213
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=7e-27 Score=208.11 Aligned_cols=155 Identities=19% Similarity=0.255 Sum_probs=117.0
Q ss_pred EEEEEeeceEEecCc--eeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 77 ITKIVAFNFKSYAGY--VTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 77 i~~l~~~~fksy~~~--~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+++ ++|++. .++ +++||+|.+ |++++|+||||||||||+++|
T Consensus 3 ~~~l~----~~~~~~~~~~l--------~~i~~~i~~----------------------G~~~~l~G~nGsGKstLl~~i 48 (171)
T cd03228 3 FKNVS----FSYPGRPKPVL--------KDVSLTIKP----------------------GEKVAIVGPSGSGKSTLLKLL 48 (171)
T ss_pred EEEEE----EEcCCCCcccc--------cceEEEEcC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 45555 678765 444 499999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEE
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLE 234 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~ 234 (388)
+ |+. ++.+|++.+.+..+.-. ... .+++.++++||++..++ .+.. + .+
T Consensus 49 ~----G~~-~~~~G~i~~~g~~~~~~--~~~-~~~~~i~~~~~~~~~~~-~t~~-----------------e-----~l- 96 (171)
T cd03228 49 L----RLY-DPTSGEILIDGVDLRDL--DLE-SLRKNIAYVPQDPFLFS-GTIR-----------------E-----NI- 96 (171)
T ss_pred H----cCC-CCCCCEEEECCEEhhhc--CHH-HHHhhEEEEcCCchhcc-chHH-----------------H-----Hh-
Confidence 9 998 77899988776543211 111 22345889988753321 1110 0 00
Q ss_pred EEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHh
Q psy14062 235 IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETD 309 (388)
Q Consensus 235 ~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~ 309 (388)
||+||+||+.+|++|+. +|+++|||||+++| +.+...+.++.+ + .+++++||+
T Consensus 97 --------------LS~G~~~rl~la~al~~------~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~-~tii~~sh~ 154 (171)
T cd03228 97 --------------LSGGQRQRIAIARALLR------DPPILILDEATSALDPETEALILEALRALAK-G-KTVIVIAHR 154 (171)
T ss_pred --------------hCHHHHHHHHHHHHHhc------CCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-C-CEEEEEecC
Confidence 99999999999999999 99999999999999 666777777654 3 459999999
Q ss_pred HHHHHHHHHHH
Q psy14062 310 LKALEPELRKA 320 (388)
Q Consensus 310 l~~l~~~~d~~ 320 (388)
++.+.. ||++
T Consensus 155 ~~~~~~-~d~~ 164 (171)
T cd03228 155 LSTIRD-ADRI 164 (171)
T ss_pred HHHHHh-CCEE
Confidence 999876 7654
No 214
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.4e-27 Score=245.25 Aligned_cols=203 Identities=12% Similarity=0.130 Sum_probs=141.1
Q ss_pred CcEEEEEEEeeceEEec---CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhh
Q psy14062 73 PRLIITKIVAFNFKSYA---GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSN 149 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~---~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKST 149 (388)
+++.+.+++ ++|+ +..++ +||||+|.+ |++++|+|||||||||
T Consensus 258 ~~l~~~~l~----~~~~~~~~~~vl--------~~vsl~i~~----------------------Ge~~~l~G~NGsGKST 303 (506)
T PRK13549 258 VILEVRNLT----AWDPVNPHIKRV--------DDVSFSLRR----------------------GEILGIAGLVGAGRTE 303 (506)
T ss_pred ceEEEecCc----cccccccccccc--------cceeeEEcC----------------------CcEEEEeCCCCCCHHH
Confidence 355666666 6673 33444 499999999 9999999999999999
Q ss_pred HHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEeccc---CCCCCcceEEEEEE-e-ccccC---CC
Q psy14062 150 VIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKS---DQVGGVSRCSVAIH-F-AQIID---KP 221 (388)
Q Consensus 150 Ll~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~---~~~~~~~~~eV~~~-~-~~~~~---~~ 221 (388)
|+++|+ |++-|+.+|++.+.+..+.. ......+...++|++|++ ..++..++.++... + ..+.. ..
T Consensus 304 Llk~i~----Gl~~~~~~G~i~~~g~~~~~--~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 377 (506)
T PRK13549 304 LVQCLF----GAYPGRWEGEIFIDGKPVKI--RNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRID 377 (506)
T ss_pred HHHHHh----CCCCCCCCcEEEECCEECCC--CCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccC
Confidence 999999 99833579998887754421 111122234699999985 35555665543321 1 01100 00
Q ss_pred Cc-cccccCCceEEEEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHH
Q psy14062 222 NE-EYEIIPGTDLEIARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDE 294 (388)
Q Consensus 222 ~~-~~~~~~~~~l~~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~e 294 (388)
.. ....+ ...+...++. ...++++..|||||+||+.||++|+. +|++|||||||++| +.+..++.+
T Consensus 378 ~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~ 450 (506)
T PRK13549 378 DAAELKTI-LESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLL------NPKILILDEPTRGIDVGAKYEIYKLINQ 450 (506)
T ss_pred hHHHHHHH-HHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhh------CCCEEEEcCCCCCcCHhHHHHHHHHHHH
Confidence 00 00111 1122223332 23467889999999999999999999 99999999999999 777788888
Q ss_pred HHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 295 ERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 295 l~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+++++. +|+++||+++.+.+.||++..+
T Consensus 451 l~~~g~-tvi~~sHd~~~~~~~~d~v~~l 478 (506)
T PRK13549 451 LVQQGV-AIIVISSELPEVLGLSDRVLVM 478 (506)
T ss_pred HHHCCC-EEEEECCCHHHHHHhCCEEEEE
Confidence 876655 5999999999999999986544
No 215
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.2e-27 Score=225.37 Aligned_cols=203 Identities=17% Similarity=0.190 Sum_probs=136.4
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.+++ ++|++..++. |+||+|.+ |++++|+||||||||||+++
T Consensus 7 ~l~~~nl~----~~~~~~~il~--------~is~~i~~----------------------Ge~~~I~G~nGsGKSTLl~~ 52 (261)
T PRK14258 7 AIKVNNLS----FYYDTQKILE--------GVSMEIYQ----------------------SKVTAIIGPSGCGKSTFLKC 52 (261)
T ss_pred eEEEeeEE----EEeCCeeEee--------ceEEEEcC----------------------CcEEEEECCCCCCHHHHHHH
Confidence 45566666 6788766654 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCC-----CCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCC-CCcc-cc
Q psy14062 154 MLFRFNAIIGPNG-----SGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK-PNEE-YE 226 (388)
Q Consensus 154 i~~~~ngIiGpng-----SGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~-~~~~-~~ 226 (388)
|+ |+. ++. +|++.+.|..+...... .....+.+++++|++..++ .+..++........+. .... ..
T Consensus 53 l~----Gl~-~~~g~i~~~G~i~~~g~~i~~~~~~-~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~ 125 (261)
T PRK14258 53 LN----RMN-ELESEVRVEGRVEFFNQNIYERRVN-LNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDD 125 (261)
T ss_pred Hh----ccc-CCCCCccccceEEECCEEhhccccc-hHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHH
Confidence 99 998 543 67777766543211111 1122356999999877665 4443322111011110 0000 00
Q ss_pred ccCCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHH
Q psy14062 227 IIPGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERT 297 (388)
Q Consensus 227 ~~~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~ 297 (388)
.+. ..+...+. ....++.+..|||||+||+.+|++|+. +|+++|||||+++| +.+...+.+++.
T Consensus 126 ~~~-~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~------~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~ 198 (261)
T PRK14258 126 IVE-SALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAV------KPKVLLMDEPCFGLDPIASMKVESLIQSLRL 198 (261)
T ss_pred HHH-HHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 000 01111111 112356788999999999999999999 99999999999999 666677777654
Q ss_pred HhhhHHHHHHHhHHHHHHHHHHHHHHH
Q psy14062 298 EKLTRVQLVETDLKALEPELRKAVNFL 324 (388)
Q Consensus 298 e~~~~ii~vtH~l~~l~~~~d~~~~y~ 324 (388)
+...+++++||++..+.+.||++.-+.
T Consensus 199 ~~~~tiiivsH~~~~i~~~~d~i~~l~ 225 (261)
T PRK14258 199 RSELTMVIVSHNLHQVSRLSDFTAFFK 225 (261)
T ss_pred hCCCEEEEEECCHHHHHHhcCEEEEEc
Confidence 423359999999999999999875544
No 216
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.92 E-value=6.7e-28 Score=224.67 Aligned_cols=184 Identities=20% Similarity=0.215 Sum_probs=125.9
Q ss_pred ccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC----CCCcceeehhh
Q psy14062 101 EVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN----GSGKSNVIDSM 176 (388)
Q Consensus 101 ~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn----gSGKs~i~da~ 176 (388)
+++||||+|.+ |++++|+||||||||||+++|+ |++ ++ .+|++.+.|..
T Consensus 1 ~l~~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l~----Gl~-~p~~~~~~G~i~~~g~~ 53 (230)
T TIGR02770 1 LVQDLNLSLKR----------------------GEVLALVGESGSGKSLTCLAIL----GLL-PPGLTQTSGEILLDGRP 53 (230)
T ss_pred CccceeEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh----cCC-CCccCccccEEEECCEe
Confidence 36699999999 9999999999999999999999 998 55 79998877654
Q ss_pred hhhcCccchhhhhccceeEecccC-CC-CCcceEEEEEEeccccCCCCc-cccccCCceEEEEEEe---eeCCCCeeeeC
Q psy14062 177 LFVFGYRASKIRANKLSVLMHKSD-QV-GGVSRCSVAIHFAQIIDKPNE-EYEIIPGTDLEIARTA---FYDNSSYYTLN 250 (388)
Q Consensus 177 i~vlg~~~~~lr~~~i~~l~q~~~-~~-~~~~~~eV~~~~~~~~~~~~~-~~~~~~~~~l~~~r~~---~~~~~~~~~LS 250 (388)
+.- ...+.+.+++++|++. .+ +..+..+.............. ....+. ..+...++. ...+.++..||
T Consensus 54 ~~~-----~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~l~~~~~~~~~~~~~LS 127 (230)
T TIGR02770 54 LLP-----LSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALIL-EALEAVGLPDPEEVLKKYPFQLS 127 (230)
T ss_pred chh-----hhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHH-HHHHHcCCCchHHHHhCChhhcC
Confidence 321 1233356999999874 22 223322211100000110000 000000 111112221 12356788999
Q ss_pred CccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 251 GKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 251 gGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
|||+||+.||++|+. +|+++|||||+++| ..+...+.++.++...+++++||+++.+...+|++...
T Consensus 128 ~G~~qrv~laral~~------~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 199 (230)
T TIGR02770 128 GGMLQRVMIALALLL------EPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVM 199 (230)
T ss_pred HHHHHHHHHHHHHhc------CCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999 99999999999999 66677787776653335999999999999998876433
No 217
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.92 E-value=5.7e-28 Score=225.23 Aligned_cols=181 Identities=15% Similarity=0.165 Sum_probs=128.7
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|+++||+|.+ |++++|+||||||||||+++|+ |++ ++.+|++.++|..+.-
T Consensus 1 l~~is~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l~----Gl~-~p~~G~i~~~g~~~~~-- 51 (230)
T TIGR01184 1 LKGVNLTIQQ----------------------GEFISLIGHSGCGKSTLLNLIS----GLA-QPTSGGVILEGKQITE-- 51 (230)
T ss_pred CCceeEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh----CCC-CCCCceEEECCEECCC--
Confidence 3599999999 9999999999999999999999 998 7789998777654321
Q ss_pred ccchhhhhccceeEecccCCCCCcceEEEEEEe-cccc-CCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHH
Q psy14062 182 YRASKIRANKLSVLMHKSDQVGGVSRCSVAIHF-AQII-DKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEV 259 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~-~~~~-~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~I 259 (388)
.. ...++++|++..++..+..++.... .... ..............+...++....++.+..|||||+||+.|
T Consensus 52 -----~~-~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 125 (230)
T TIGR01184 52 -----PG-PDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAI 125 (230)
T ss_pred -----CC-hhheEEecCcccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHH
Confidence 11 1247999998877766655433211 0000 10000000000011222233333456788999999999999
Q ss_pred HHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 260 AKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 260 a~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
|++|+. +|+++|||||+++| ..+.+.+.++.++...+++++||+++.+.+.+|++...
T Consensus 126 a~al~~------~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l 188 (230)
T TIGR01184 126 ARALSI------RPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVML 188 (230)
T ss_pred HHHHHc------CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 999999 99999999999999 77777888776653335999999999999999876443
No 218
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.2e-27 Score=224.01 Aligned_cols=201 Identities=15% Similarity=0.188 Sum_probs=136.6
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|+++.++. ++||+|.+ |++++|+||||||||||+++
T Consensus 5 ~l~~~~l~----~~~~~~~~l~--------~~s~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~ 50 (252)
T PRK14239 5 ILQVSDLS----VYYNKKKALN--------SVSLDFYP----------------------NEITALIGPSGSGKSTLLRS 50 (252)
T ss_pred eEEEEeeE----EEECCeeeee--------eeeEEEcC----------------------CcEEEEECCCCCCHHHHHHH
Confidence 56677777 7798766654 99999999 99999999999999999999
Q ss_pred hhhcccEEEc-CC---CCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-c-cc
Q psy14062 154 MLFRFNAIIG-PN---GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-Y-EI 227 (388)
Q Consensus 154 i~~~~ngIiG-pn---gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~-~~ 227 (388)
|+ |+.- ++ .+|++.+.|..+.......... ++.+++++|++..++ .+..++........+..... . ..
T Consensus 51 l~----Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~-~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~ 124 (252)
T PRK14239 51 IN----RMNDLNPEVTITGSIVYNGHNIYSPRTDTVDL-RKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEA 124 (252)
T ss_pred Hh----cccccCCCCCccceEEECCEECcCcccchHhh-hhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHH
Confidence 99 8742 23 4899888775432111111122 346999999987765 44443321111111111000 0 00
Q ss_pred cCCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 228 IPGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 228 ~~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
.. ..+..... ....+..+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.++.+
T Consensus 125 ~~-~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~- 196 (252)
T PRK14239 125 VE-KSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLAT------SPKIILLDEPTSALDPISAGKIEETLLGLKD- 196 (252)
T ss_pred HH-HHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhc------CCCEEEEcCCccccCHHHHHHHHHHHHHHhh-
Confidence 00 00111111 112356788999999999999999999 99999999999999 667777877754
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+ .+++++||+++.+.+.+|++...
T Consensus 197 ~-~tii~~sH~~~~~~~~~d~i~~l 220 (252)
T PRK14239 197 D-YTMLLVTRSMQQASRISDRTGFF 220 (252)
T ss_pred C-CeEEEEECCHHHHHHhCCEEEEE
Confidence 3 36999999999999999876433
No 219
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.2e-27 Score=243.64 Aligned_cols=185 Identities=12% Similarity=0.139 Sum_probs=131.7
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|+||||+|.+ |++++|+||||||||||+++|+ |++ ++.+|++.+.|..+.-
T Consensus 279 l~~isl~i~~----------------------Ge~~~l~G~NGsGKSTLlk~i~----Gl~-~p~~G~I~~~g~~~~~-- 329 (510)
T PRK09700 279 VRDISFSVCR----------------------GEILGFAGLVGSGRTELMNCLF----GVD-KRAGGEIRLNGKDISP-- 329 (510)
T ss_pred ccceeEEEcC----------------------CcEEEEECCCCCCHHHHHHHHh----CCC-cCCCCeEEECCEECCC--
Confidence 4499999999 9999999999999999999999 998 7789998887754321
Q ss_pred ccchhhhhccceeEeccc---CCCCCcceEEEEEEeccc----c----CC-CC-ccccccCCceEEEEEEe-eeCCCCee
Q psy14062 182 YRASKIRANKLSVLMHKS---DQVGGVSRCSVAIHFAQI----I----DK-PN-EEYEIIPGTDLEIARTA-FYDNSSYY 247 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~---~~~~~~~~~eV~~~~~~~----~----~~-~~-~~~~~~~~~~l~~~r~~-~~~~~~~~ 247 (388)
.......+++++|++|.+ ..++..++.++....... + +. .. ...... ...+...++. ...++++.
T Consensus 330 ~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~ 408 (510)
T PRK09700 330 RSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTA-ENQRELLALKCHSVNQNIT 408 (510)
T ss_pred CCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHH-HHHHHhcCCCCCCccCccc
Confidence 111111234699999973 455666655433221000 0 00 00 000000 1122223332 34567899
Q ss_pred eeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 248 TLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 248 ~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
.|||||+||+.||++|+. +|++|||||||++| +.+...+.++++++. +|+++|||++.+...||++..
T Consensus 409 ~LSgGq~qrv~lAral~~------~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~-tvi~vsHd~~~~~~~~d~i~~ 481 (510)
T PRK09700 409 ELSGGNQQKVLISKWLCC------CPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGK-VILMVSSELPEIITVCDRIAV 481 (510)
T ss_pred cCChHHHHHHHHHHHHhc------CCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCC-EEEEEcCCHHHHHhhCCEEEE
Confidence 999999999999999999 99999999999999 777888888876655 499999999999999998654
Q ss_pred H
Q psy14062 323 F 323 (388)
Q Consensus 323 y 323 (388)
+
T Consensus 482 l 482 (510)
T PRK09700 482 F 482 (510)
T ss_pred E
Confidence 3
No 220
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.3e-27 Score=223.66 Aligned_cols=200 Identities=16% Similarity=0.164 Sum_probs=136.6
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|++..++. ++||+|.+ |++++|+||||||||||+++
T Consensus 3 ~l~~~~l~----~~~~~~~~l~--------~i~~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~ 48 (250)
T PRK14262 3 IIEIENFS----AYYGEKKAVK--------NVTMKIFK----------------------NQITAIIGPSGCGKTTLLRS 48 (250)
T ss_pred eEEEEeeE----EEeCCceeEe--------eeeEeecC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 45666666 6788766654 99999999 99999999999999999999
Q ss_pred hhhcccEEEcC----CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCc-cc-cc
Q psy14062 154 MLFRFNAIIGP----NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNE-EY-EI 227 (388)
Q Consensus 154 i~~~~ngIiGp----ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~-~~-~~ 227 (388)
|+ |+..| +.+|++.++|..+...... ...+.+.++++||++..++ .+..++............. .. ..
T Consensus 49 i~----Gl~~~~~~~~~~G~i~i~g~~~~~~~~~-~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~ 122 (250)
T PRK14262 49 IN----RMNDHIPGFRVEGKIYFKGQDIYDPQLD-VTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRI 122 (250)
T ss_pred Hh----ccccCCCCCCcceEEEECCEEcccchhh-HHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHH
Confidence 99 99854 2689988877543211001 1122356999999987665 4544332211111111000 00 00
Q ss_pred cCCceEEEEEEe----eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 228 IPGTDLEIARTA----FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 228 ~~~~~l~~~r~~----~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
+. ..+...+.. ...+.++..|||||+||+.||++|+. +|+++|+|||+++| ..+...+.++.+
T Consensus 123 ~~-~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~- 194 (250)
T PRK14262 123 VE-ESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAV------EPEVILLDEPTSALDPIATQRIEKLLEELSE- 194 (250)
T ss_pred HH-HHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhC------CCCEEEEeCCccccCHHHHHHHHHHHHHHhc-
Confidence 00 001111110 12356788999999999999999999 99999999999999 667777777754
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
+. +++++||+++.+...+|++..
T Consensus 195 ~~-tili~sH~~~~~~~~~d~i~~ 217 (250)
T PRK14262 195 NY-TIVIVTHNIGQAIRIADYIAF 217 (250)
T ss_pred Cc-EEEEEeCCHHHHHHhCCEEEE
Confidence 43 699999999999999887643
No 221
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.2e-27 Score=226.04 Aligned_cols=202 Identities=19% Similarity=0.265 Sum_probs=138.3
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+.+.+.+++ ++|+++.++. ||||+|.+ |++++|+||||||||||++
T Consensus 20 ~~l~i~nl~----~~~~~~~il~--------~vs~~i~~----------------------Ge~~~I~G~nGsGKSTLl~ 65 (276)
T PRK14271 20 PAMAAVNLT----LGFAGKTVLD--------QVSMGFPA----------------------RAVTSLMGPTGSGKTTFLR 65 (276)
T ss_pred cEEEEeeEE----EEECCEEEee--------eeEEEEcC----------------------CcEEEEECCCCCCHHHHHH
Confidence 467777777 7898877755 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcC----CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCC-CCccccc
Q psy14062 153 SMLFRFNAIIGP----NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK-PNEEYEI 227 (388)
Q Consensus 153 ~i~~~~ngIiGp----ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~-~~~~~~~ 227 (388)
+|+ |++-| +.+|++.+.+..+.-. .........++|++|++..++ .+..++.......... .......
T Consensus 66 ~l~----Gl~~p~~~~~~~G~i~~~g~~i~~~--~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~ 138 (276)
T PRK14271 66 TLN----RMNDKVSGYRYSGDVLLGGRSIFNY--RDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRG 138 (276)
T ss_pred HHh----ccCCcCCCCCCceEEEECCEEcccc--chhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHH
Confidence 999 98833 3689988876543211 111122346999999987765 4444322111010010 1000000
Q ss_pred cCCceEEEEEEe----eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 228 IPGTDLEIARTA----FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 228 ~~~~~l~~~r~~----~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
.....+...++. ...+..+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.++.++
T Consensus 139 ~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 212 (276)
T PRK14271 139 VAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAV------NPEVLLLDEPTSALDPTTTEKIEEFIRSLADR 212 (276)
T ss_pred HHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHhcC
Confidence 000011111111 12346688999999999999999999 99999999999999 6667777777653
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
.+|+++||+++.+.+.+|++...
T Consensus 213 --~tiiivsH~~~~~~~~~dri~~l 235 (276)
T PRK14271 213 --LTVIIVTHNLAQAARISDRAALF 235 (276)
T ss_pred --CEEEEEeCCHHHHHHhCCEEEEE
Confidence 36999999999999998876444
No 222
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.2e-27 Score=224.99 Aligned_cols=200 Identities=17% Similarity=0.159 Sum_probs=136.9
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|+++.+|. ||||+|.+ |++++|+||||||||||+++
T Consensus 20 ~l~~~nl~----~~~~~~~il~--------~vsl~i~~----------------------Ge~~~I~G~nGsGKSTLl~~ 65 (267)
T PRK14237 20 ALSTKDLH----VYYGKKEAIK--------GIDMQFEK----------------------NKITALIGPSGSGKSTYLRS 65 (267)
T ss_pred EEEEeeEE----EEECCeeeEe--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 56666776 7788776655 99999999 99999999999999999999
Q ss_pred hhhcccEEEcC----CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCc-cc-cc
Q psy14062 154 MLFRFNAIIGP----NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNE-EY-EI 227 (388)
Q Consensus 154 i~~~~ngIiGp----ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~-~~-~~ 227 (388)
|+ |++-| +.+|++.+++..+........ ..++.++++||.+..++ .+..++........+.... .. ..
T Consensus 66 l~----Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~-~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~ 139 (267)
T PRK14237 66 LN----RMNDTIDIARVTGQILYRGIDINRKEINVY-EMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEI 139 (267)
T ss_pred HH----hccCccCCCCcceEEEECCEEcccccCChH-HHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHH
Confidence 99 98843 479998887754421111111 22356999999987765 3444332211111111000 00 00
Q ss_pred cCCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 228 IPGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 228 ~~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
+. ..+...++ ....+..+..|||||+||++||++|+. +|+++|||||+++| +.+...+.++.+
T Consensus 140 ~~-~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~- 211 (267)
T PRK14237 140 VE-TSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAV------KPDILLMDEPASALDPISTMQLEETMFELKK- 211 (267)
T ss_pred HH-HHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-
Confidence 00 00111111 112356788999999999999999999 99999999999999 666777777753
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
+. +++++||+++.+.+.||++..
T Consensus 212 ~~-tiii~tH~~~~~~~~~d~i~~ 234 (267)
T PRK14237 212 NY-TIIIVTHNMQQAARASDYTAF 234 (267)
T ss_pred CC-EEEEEecCHHHHHHhcCEEEE
Confidence 33 599999999999999987643
No 223
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.8e-27 Score=223.55 Aligned_cols=201 Identities=17% Similarity=0.181 Sum_probs=137.4
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|+++.+|. |+||+|.+ |++++|+||||||||||++
T Consensus 5 ~~i~~~~l~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~ 50 (253)
T PRK14261 5 IILSTKNLN----LWYGEKHALY--------DITISIPK----------------------NRVTALIGPSGCGKSTLLR 50 (253)
T ss_pred ceEEEeeeE----EEECCeeeee--------eeEEEECC----------------------CcEEEEECCCCCCHHHHHH
Confidence 456666666 6798776655 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcC-C---CCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCc-c-cc
Q psy14062 153 SMLFRFNAIIGP-N---GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNE-E-YE 226 (388)
Q Consensus 153 ~i~~~~ngIiGp-n---gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~-~-~~ 226 (388)
+|+ |++++ + .+|.+.+.|..+.-........ .+.+++++|++..++. ++.++..+.....+.... . ..
T Consensus 51 ~l~----Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~ 124 (253)
T PRK14261 51 CFN----RMNDLIPGCRITGDILYNGENIMDSGADVVAL-RRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDT 124 (253)
T ss_pred HHh----ccccCCCCCCcceEEEECCEEccccccchhhh-hceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHH
Confidence 999 98753 2 4899888775443111111122 3469999999877653 444332211111111000 0 00
Q ss_pred ccCCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHH
Q psy14062 227 IIPGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERT 297 (388)
Q Consensus 227 ~~~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~ 297 (388)
.+. ..+...++ ....+..+..|||||+||+.+|++|+. +|+++|||||+++| +.+...+.++.+
T Consensus 125 ~~~-~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~------~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~ 197 (253)
T PRK14261 125 IVE-KSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAV------NPEVILMDEPCSALDPIATAKIEDLIEDLKK 197 (253)
T ss_pred HHH-HHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhh
Confidence 000 00111111 112356788999999999999999999 99999999999999 666677777765
Q ss_pred HhhhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 298 EKLTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 298 e~~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
. .+++++||+++.+.+.+|++..
T Consensus 198 -~-~tvii~sh~~~~~~~~~d~v~~ 220 (253)
T PRK14261 198 -E-YTVIIVTHNMQQAARVSDYTGF 220 (253)
T ss_pred -C-ceEEEEEcCHHHHHhhCCEEEE
Confidence 3 3699999999999999887643
No 224
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.1e-27 Score=225.19 Aligned_cols=201 Identities=18% Similarity=0.240 Sum_probs=138.3
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|++..++. |+||+|.+ |++++|+||||||||||+++
T Consensus 7 ~l~~~~l~----~~~~~~~il~--------~isl~i~~----------------------Ge~~~l~G~nGsGKSTLlk~ 52 (259)
T PRK14260 7 AIKVKDLS----FYYNTSKAIE--------GISMDIYR----------------------NKVTAIIGPSGCGKSTFIKT 52 (259)
T ss_pred eEEEEEEE----EEECCeEeec--------ceEEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 45666666 6788766654 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCC----CCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCC-CCcc-ccc
Q psy14062 154 MLFRFNAIIGPN----GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK-PNEE-YEI 227 (388)
Q Consensus 154 i~~~~ngIiGpn----gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~-~~~~-~~~ 227 (388)
|+ |+..|. .+|++.++|..+.......... ...+++++|++..++ .+..++........+. .... ...
T Consensus 53 l~----Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~-~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~ 126 (259)
T PRK14260 53 LN----RISELEGPVKVEGVVDFFGQNIYDPRININRL-RRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEI 126 (259)
T ss_pred HH----hhcCcccCCccceEEEECCEeccccccchHhh-hhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHH
Confidence 99 987432 4899888776543111111122 346999999987765 4544432211011110 0000 000
Q ss_pred cCCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 228 IPGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 228 ~~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
.. ..+...+. ....+..+..|||||+||++||++|+. +|+++|||||+++| ..+...+.++++
T Consensus 127 ~~-~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~- 198 (259)
T PRK14260 127 VE-SALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAI------KPKVLLMDEPCSALDPIATMKVEELIHSLRS- 198 (259)
T ss_pred HH-HHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-
Confidence 00 01111111 123456788999999999999999999 99999999999999 667777777755
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
.. +++++||+++.+.+.+|++.-+
T Consensus 199 ~~-tiii~tH~~~~i~~~~d~i~~l 222 (259)
T PRK14260 199 EL-TIAIVTHNMQQATRVSDFTAFF 222 (259)
T ss_pred CC-EEEEEeCCHHHHHHhcCeEEEE
Confidence 33 6999999999999999986554
No 225
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.92 E-value=2e-27 Score=246.65 Aligned_cols=204 Identities=17% Similarity=0.173 Sum_probs=140.2
Q ss_pred CcEEEEEEEeeceEEecC-----ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCCh
Q psy14062 73 PRLIITKIVAFNFKSYAG-----YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGK 147 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~-----~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGK 147 (388)
+++.+.+++ ++|++ ..++ +||||+|.+ |++++|+|||||||
T Consensus 278 ~~l~~~~l~----~~~~~~~~~~~~il--------~~is~~i~~----------------------Ge~~~l~G~NGsGK 323 (520)
T TIGR03269 278 PIIKVRNVS----KRYISVDRGVVKAV--------DNVSLEVKE----------------------GEIFGIVGTSGAGK 323 (520)
T ss_pred ceEEEeccE----EEeccCCCCCceEE--------eeEEEEEcC----------------------CCEEEEECCCCCCH
Confidence 456666666 67842 3454 499999999 99999999999999
Q ss_pred hhHHhhhhhcccEEEcCCCCCcceee-hhhh-hhcCccc--hhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCc
Q psy14062 148 SNVIDSMLFRFNAIIGPNGSGKSNVI-DSML-FVFGYRA--SKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNE 223 (388)
Q Consensus 148 STLl~~i~~~~ngIiGpngSGKs~i~-da~i-~vlg~~~--~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~ 223 (388)
|||+++|+ |++ ++.+|++.+. +... .+..... ...++++++|++|++..++..++.++......+ .....
T Consensus 324 STLl~~l~----Gl~-~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~ 397 (520)
T TIGR03269 324 TTLSKIIA----GVL-EPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDE 397 (520)
T ss_pred HHHHHHHh----CCC-CCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHH
Confidence 99999999 998 7789998885 4311 1111111 111234699999998777666655433211010 11100
Q ss_pred -cccccCCceEEEEEEee-----eCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhh
Q psy14062 224 -EYEIIPGTDLEIARTAF-----YDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKY 292 (388)
Q Consensus 224 -~~~~~~~~~l~~~r~~~-----~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l 292 (388)
....+. ..+...++.. +.++++..|||||+||+.||++|+. +|++|||||||++| +.+...+
T Consensus 398 ~~~~~~~-~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~------~p~lLllDEPt~~LD~~~~~~l~~~l 470 (520)
T TIGR03269 398 LARMKAV-ITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIK------EPRIVILDEPTGTMDPITKVDVTHSI 470 (520)
T ss_pred HHHHHHH-HHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 000000 1122222221 2467889999999999999999999 99999999999999 7778888
Q ss_pred HHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 293 DEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 293 ~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
.+++++...+|+++||+++.+.+.||++..+
T Consensus 471 ~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l 501 (520)
T TIGR03269 471 LKAREEMEQTFIIVSHDMDFVLDVCDRAALM 501 (520)
T ss_pred HHHHHHcCcEEEEEeCCHHHHHHhCCEEEEE
Confidence 8887653345999999999999999876433
No 226
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.6e-27 Score=225.26 Aligned_cols=202 Identities=16% Similarity=0.186 Sum_probs=138.8
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|+++.++. |+||+|.+ |++++|+||||||||||++
T Consensus 24 ~~l~~~nl~----~~~~~~~il~--------~vs~~i~~----------------------Ge~~~I~G~nGsGKSTLl~ 69 (272)
T PRK14236 24 TALEVRNLN----LFYGDKQALF--------DISMRIPK----------------------NRVTAFIGPSGCGKSTLLR 69 (272)
T ss_pred cEEEEEEEE----EEECCeeEee--------eEEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 456677777 7798766654 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcC----CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCC-CCcc-cc
Q psy14062 153 SMLFRFNAIIGP----NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK-PNEE-YE 226 (388)
Q Consensus 153 ~i~~~~ngIiGp----ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~-~~~~-~~ 226 (388)
+|+ |++-| +.+|++.+.|..+.......... ++.+++++|++..++. +..++........+. .... ..
T Consensus 70 ~la----Gl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~-~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~ 143 (272)
T PRK14236 70 CFN----RMNDLVDNCRIEGEIRLDGQNIYDKKVDVAEL-RRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDE 143 (272)
T ss_pred HHH----hcCCCccCCCCceEEEECCEECcccccCHHHH-hccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHH
Confidence 999 98732 36999888776543111111122 3569999999877654 443322211011110 0000 00
Q ss_pred ccCCceEEEEEEe----eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHH
Q psy14062 227 IIPGTDLEIARTA----FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERT 297 (388)
Q Consensus 227 ~~~~~~l~~~r~~----~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~ 297 (388)
.+. ..+...+.. ...+..+..|||||+||+.||++|+. +|+++|||||+++| ..+...+.++++
T Consensus 144 ~~~-~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~------~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~ 216 (272)
T PRK14236 144 AVE-RSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAI------EPEVLLLDEPTSALDPISTLKIEELITELKS 216 (272)
T ss_pred HHH-HHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHC------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 000 011111110 12356788999999999999999999 99999999999999 667777877765
Q ss_pred HhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 298 EKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 298 e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+. +++++||+++.+.+.+|++...
T Consensus 217 -~~-tiiivtH~~~~~~~~~d~i~~l 240 (272)
T PRK14236 217 -KY-TIVIVTHNMQQAARVSDYTAFM 240 (272)
T ss_pred -CC-eEEEEeCCHHHHHhhCCEEEEE
Confidence 43 5999999999999998876443
No 227
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.5e-27 Score=223.55 Aligned_cols=200 Identities=15% Similarity=0.171 Sum_probs=136.0
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|+++.++. ++||+|.+ |++++|+||||||||||+++
T Consensus 4 ~l~~~~l~----~~~~~~~~l~--------~~sl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~ 49 (251)
T PRK14251 4 IISAKDVH----LSYGNYEALH--------GISLDFEE----------------------KELTALIGPSGCGKSTFLRC 49 (251)
T ss_pred eEEEEeeE----EEECCeeeee--------eeeEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 45566666 6788766654 99999999 99999999999999999999
Q ss_pred hhhcccEEEc--C--CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-c-cc
Q psy14062 154 MLFRFNAIIG--P--NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-Y-EI 227 (388)
Q Consensus 154 i~~~~ngIiG--p--ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~-~~ 227 (388)
|+ |++- | +.+|++.++|..+...... ....++.+++++|++..++ .++.++........+..... . ..
T Consensus 50 l~----Gl~~~~p~~~~~G~v~i~g~~~~~~~~~-~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~ 123 (251)
T PRK14251 50 LN----RMNDDIENIKITGEIKFEGQNIYGSKMD-LVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQR 123 (251)
T ss_pred Hh----hccccccCCCcceEEEECCEEcccccch-HHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHH
Confidence 99 9883 1 3699988877644211111 1122346999999987664 34443322111111110000 0 00
Q ss_pred cCCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 228 IPGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 228 ~~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
.. ..+...++ ....+..+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.++.+
T Consensus 124 ~~-~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~- 195 (251)
T PRK14251 124 VE-ESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAV------RPKVVLLDEPTSALDPISSSEIEETLMELKH- 195 (251)
T ss_pred HH-HHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhc------CCCEEEecCCCccCCHHHHHHHHHHHHHHHc-
Confidence 00 01111111 112356788999999999999999999 99999999999999 667777777654
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
+ .+++++||+++.+.+.+|++..
T Consensus 196 ~-~tiiiisH~~~~~~~~~d~i~~ 218 (251)
T PRK14251 196 Q-YTFIMVTHNLQQAGRISDQTAF 218 (251)
T ss_pred C-CeEEEEECCHHHHHhhcCEEEE
Confidence 3 3699999999999999887643
No 228
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.92 E-value=6.7e-27 Score=220.07 Aligned_cols=199 Identities=14% Similarity=0.155 Sum_probs=130.4
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|+++.++. |+||+|.+ |++++|+||||||||||+++|
T Consensus 2 i~~~nl~----~~~~~~~~l~--------~isl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l 47 (248)
T PRK09580 2 LSIKDLH----VSVEDKAILR--------GLNLEVRP----------------------GEVHAIMGPNGSGKSTLSATL 47 (248)
T ss_pred eEEEEEE----EEeCCeeeee--------cceeEEcC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 4566666 7788766654 99999999 999999999999999999999
Q ss_pred hhcccEEEc-CCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEE-EEeccc--cCCCC--cc--cc
Q psy14062 155 LFRFNAIIG-PNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVA-IHFAQI--IDKPN--EE--YE 226 (388)
Q Consensus 155 ~~~~ngIiG-pngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~-~~~~~~--~~~~~--~~--~~ 226 (388)
+ |++- ++.+|++.++|..+.. ......++..+++++|++..++..+..... ..+..+ ..... .. ..
T Consensus 48 ~----Gl~~~~~~~G~i~~~g~~~~~--~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (248)
T PRK09580 48 A----GREDYEVTGGTVEFKGKDLLE--LSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQ 121 (248)
T ss_pred c----CCccCCCCceEEEECCCcccc--CCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHH
Confidence 9 9851 5779998887754421 111223335689999987665543211000 000000 00000 00 00
Q ss_pred ccCCceEEEEEE-eeeCCCCee-eeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 227 IIPGTDLEIART-AFYDNSSYY-TLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 227 ~~~~~~l~~~r~-~~~~~~~~~-~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
......+...++ ....+..+. .|||||+||+.||++|+. +|++|||||||++| +.+...+.++++.+
T Consensus 122 ~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~------~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~ 195 (248)
T PRK09580 122 DLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL------EPELCILDESDSGLDIDALKIVADGVNSLRDGK 195 (248)
T ss_pred HHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHc------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCC
Confidence 000001111111 111233343 799999999999999999 99999999999999 66667777776554
Q ss_pred hhHHHHHHHhHHHHHHH-HHHH
Q psy14062 300 LTRVQLVETDLKALEPE-LRKA 320 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~-~d~~ 320 (388)
. +++++||++..+... +|++
T Consensus 196 ~-tiii~sH~~~~~~~~~~d~i 216 (248)
T PRK09580 196 R-SFIIVTHYQRILDYIKPDYV 216 (248)
T ss_pred C-EEEEEeCCHHHHHhhhCCEE
Confidence 4 599999999988876 6764
No 229
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.6e-27 Score=222.89 Aligned_cols=196 Identities=19% Similarity=0.197 Sum_probs=137.1
Q ss_pred EEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 77 i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.++. ++|++. ++ +|+||+|.+ |++++|+||||||||||+++|+
T Consensus 3 ~~~l~----~~~~~~-~l--------~~is~~i~~----------------------Ge~~~i~G~nG~GKStLl~~l~- 46 (235)
T cd03299 3 VENLS----KDWKEF-KL--------KNVSLEVER----------------------GDYFVILGPTGSGKSVLLETIA- 46 (235)
T ss_pred eEeEE----EEeCCc-ee--------eeeEEEEcC----------------------CcEEEEECCCCCCHHHHHHHHh-
Confidence 44555 568653 44 499999999 9999999999999999999999
Q ss_pred cccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEE
Q psy14062 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIA 236 (388)
Q Consensus 157 ~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (388)
|+. ++.+|++.+.|..+.- . . .+.+.+++++|++..++..+..++........+.............+...
T Consensus 47 ---G~~-~p~~G~v~i~g~~~~~--~--~-~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (235)
T cd03299 47 ---GFI-KPDSGKILLNGKDITN--L--P-PEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEML 117 (235)
T ss_pred ---CCc-CCCceEEEECCEEcCc--C--C-hhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 998 7789998877654321 1 1 12356999999987776666543322110111100000000000112222
Q ss_pred EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHH
Q psy14062 237 RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLK 311 (388)
Q Consensus 237 r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~ 311 (388)
++..+.++.+..|||||+||++||++|+. +|+++|+|||+++| +.+...+.++..+...+++++||++.
T Consensus 118 ~l~~~~~~~~~~LS~G~~qrl~laral~~------~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~ 191 (235)
T cd03299 118 GIDHLLNRKPETLSGGEQQRVAIARALVV------NPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE 191 (235)
T ss_pred CChhHHhcCcccCCHHHHHHHHHHHHHHc------CCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 33334567788999999999999999999 99999999999999 66777777776652346999999999
Q ss_pred HHHHHHHHHHHH
Q psy14062 312 ALEPELRKAVNF 323 (388)
Q Consensus 312 ~l~~~~d~~~~y 323 (388)
.+.+.+|++..+
T Consensus 192 ~~~~~~d~i~~l 203 (235)
T cd03299 192 EAWALADKVAIM 203 (235)
T ss_pred HHHHhCCEEEEE
Confidence 999998876443
No 230
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.92 E-value=3e-27 Score=223.06 Aligned_cols=201 Identities=17% Similarity=0.174 Sum_probs=134.3
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.++. ++|+++.+|. +|||+|.+ |++++|+||||||||||++
T Consensus 6 ~~l~~~~l~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~ 51 (252)
T CHL00131 6 PILEIKNLH----ASVNENEILK--------GLNLSINK----------------------GEIHAIMGPNGSGKSTLSK 51 (252)
T ss_pred ceEEEEeEE----EEeCCEEeee--------cceeEEcC----------------------CcEEEEECCCCCCHHHHHH
Confidence 356677777 7788766654 99999999 9999999999999999999
Q ss_pred hhhhcccEEE-cCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEecccc----CCCC-c--c
Q psy14062 153 SMLFRFNAII-GPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQII----DKPN-E--E 224 (388)
Q Consensus 153 ~i~~~~ngIi-GpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~----~~~~-~--~ 224 (388)
+|+ |+. -++.+|++.+.+..+.... ....+...+++++|++..++..+..+......... .... . .
T Consensus 52 ~i~----Gl~~~~~~~G~i~~~g~~~~~~~--~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 125 (252)
T CHL00131 52 VIA----GHPAYKILEGDILFKGESILDLE--PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLE 125 (252)
T ss_pred HHc----CCCcCcCCCceEEECCEEcccCC--hhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHH
Confidence 999 872 1567999888765442211 11122224788999877766554332211000000 0000 0 0
Q ss_pred c-cccCCceEEEEEEe-eeCCCCee-eeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHH
Q psy14062 225 Y-EIIPGTDLEIARTA-FYDNSSYY-TLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEER 296 (388)
Q Consensus 225 ~-~~~~~~~l~~~r~~-~~~~~~~~-~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~ 296 (388)
. ..+ ...+...++. ...+..+. .|||||+||+.||++|+. +|+++|+|||+++| +.+...+.++.
T Consensus 126 ~~~~~-~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 198 (252)
T CHL00131 126 FLEII-NEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALL------DSELAILDETDSGLDIDALKIIAEGINKLM 198 (252)
T ss_pred HHHHH-HHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 0 000 0112222322 12345555 599999999999999999 99999999999999 66777887776
Q ss_pred HHhhhHHHHHHHhHHHHHHH-HHHHH
Q psy14062 297 TEKLTRVQLVETDLKALEPE-LRKAV 321 (388)
Q Consensus 297 ~e~~~~ii~vtH~l~~l~~~-~d~~~ 321 (388)
+.+. +++++||+++.+... +|++.
T Consensus 199 ~~g~-tii~~tH~~~~~~~~~~d~i~ 223 (252)
T CHL00131 199 TSEN-SIILITHYQRLLDYIKPDYVH 223 (252)
T ss_pred hCCC-EEEEEecCHHHHHhhhCCEEE
Confidence 5544 599999999998876 67653
No 231
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.92 E-value=3.4e-27 Score=243.76 Aligned_cols=186 Identities=13% Similarity=0.150 Sum_probs=130.9
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|+||||+|.+ |++++|+|||||||||||++|+ |++-|+.+|++.+.+..+..
T Consensus 276 l~~is~~i~~----------------------Ge~~~l~G~NGsGKSTLl~~l~----G~~~p~~~G~i~~~g~~~~~-- 327 (500)
T TIGR02633 276 VDDVSFSLRR----------------------GEILGVAGLVGAGRTELVQALF----GAYPGKFEGNVFINGKPVDI-- 327 (500)
T ss_pred cccceeEEeC----------------------CcEEEEeCCCCCCHHHHHHHHh----CCCCCCCCeEEEECCEECCC--
Confidence 4499999999 9999999999999999999999 99833479998887654321
Q ss_pred ccchhhhhccceeEeccc---CCCCCcceEEEEEE-e-ccccC---CCCcc-ccccCCceEEEEEEe-eeCCCCeeeeCC
Q psy14062 182 YRASKIRANKLSVLMHKS---DQVGGVSRCSVAIH-F-AQIID---KPNEE-YEIIPGTDLEIARTA-FYDNSSYYTLNG 251 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~---~~~~~~~~~eV~~~-~-~~~~~---~~~~~-~~~~~~~~l~~~r~~-~~~~~~~~~LSg 251 (388)
......+++++++++|++ ..++..++.++... . ..... ..... ...+. ..+....+. ...++++..|||
T Consensus 328 ~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~l~~~~~~~~~~~LSg 406 (500)
T TIGR02633 328 RNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIG-SAIQRLKVKTASPFLPIGRLSG 406 (500)
T ss_pred CCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHH-HHHHhcCccCCCccCccccCCH
Confidence 111122345699999986 35666665543321 1 00100 00000 00011 122222332 134678899999
Q ss_pred ccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 252 KKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 252 Gq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
||+||+.||++|+. +|++|||||||++| +.+...+.++++++. +|+++|||++.+.+.||++..+
T Consensus 407 Gqkqrv~la~al~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~-tviivsHd~~~~~~~~d~v~~l 476 (500)
T TIGR02633 407 GNQQKAVLAKMLLT------NPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGV-AIIVVSSELAEVLGLSDRVLVI 476 (500)
T ss_pred HHHHHHHHHHHHhh------CCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCC-EEEEECCCHHHHHHhCCEEEEE
Confidence 99999999999999 99999999999999 667778888877655 4999999999999999886543
No 232
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.92 E-value=1.5e-26 Score=207.20 Aligned_cols=152 Identities=18% Similarity=0.239 Sum_probs=115.5
Q ss_pred EEecCc--eeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEc
Q psy14062 86 KSYAGY--VTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIG 163 (388)
Q Consensus 86 ksy~~~--~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiG 163 (388)
++|++. .++ +|+||+|.+ |++++|+||||||||||+++|+ |+.
T Consensus 8 ~~~~~~~~~~l--------~~i~~~i~~----------------------Ge~~~i~G~nGsGKStLl~~l~----G~~- 52 (178)
T cd03247 8 FSYPEQEQQVL--------KNLSLELKQ----------------------GEKIALLGRSGSGKSTLLQLLT----GDL- 52 (178)
T ss_pred EEeCCCCccce--------EEEEEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh----ccC-
Confidence 568654 444 499999999 9999999999999999999999 998
Q ss_pred CCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCC
Q psy14062 164 PNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDN 243 (388)
Q Consensus 164 pngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~ 243 (388)
++.+|++.+++..+... ...+++.+++++|++..++ .+..+ .+
T Consensus 53 ~~~~G~i~~~g~~~~~~----~~~~~~~i~~~~q~~~~~~-~tv~~----------------------~i---------- 95 (178)
T cd03247 53 KPQQGEITLDGVPVSDL----EKALSSLISVLNQRPYLFD-TTLRN----------------------NL---------- 95 (178)
T ss_pred CCCCCEEEECCEEHHHH----HHHHHhhEEEEccCCeeec-ccHHH----------------------hh----------
Confidence 77899988877544211 1122346899998654321 11100 00
Q ss_pred CCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHH
Q psy14062 244 SSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELR 318 (388)
Q Consensus 244 ~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d 318 (388)
+..||+||+||+.||++|+. +|+++|+|||+++| +.+.+.+.++. ++ .+++++||+++.+. .++
T Consensus 96 --~~~LS~G~~qrv~laral~~------~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~-~tii~~sh~~~~~~-~~d 164 (178)
T cd03247 96 --GRRFSGGERQRLALARILLQ------DAPIVLLDEPTVGLDPITERQLLSLIFEVL-KD-KTLIWITHHLTGIE-HMD 164 (178)
T ss_pred --cccCCHHHHHHHHHHHHHhc------CCCEEEEECCcccCCHHHHHHHHHHHHHHc-CC-CEEEEEecCHHHHH-hCC
Confidence 56899999999999999999 99999999999999 66667777664 34 35999999999875 466
Q ss_pred HH
Q psy14062 319 KA 320 (388)
Q Consensus 319 ~~ 320 (388)
++
T Consensus 165 ~~ 166 (178)
T cd03247 165 KI 166 (178)
T ss_pred EE
Confidence 43
No 233
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.92 E-value=6.2e-27 Score=241.22 Aligned_cols=192 Identities=16% Similarity=0.121 Sum_probs=135.3
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|++..+|+ ||||+|.+ |++++|+||||||||||+++|
T Consensus 4 l~~~~l~----~~~~~~~il~--------~vsl~i~~----------------------Ge~~~liG~nGsGKSTLl~~l 49 (490)
T PRK10938 4 LQISQGT----FRLSDTKTLQ--------LPSLTLNA----------------------GDSWAFVGANGSGKSALARAL 49 (490)
T ss_pred EEEEeEE----EEcCCeeecc--------cceEEEcC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 4556666 7798766655 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCC--C------CcceEEEEEEeccccCCCCcccc
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQV--G------GVSRCSVAIHFAQIIDKPNEEYE 226 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~--~------~~~~~eV~~~~~~~~~~~~~~~~ 226 (388)
+ |++ ++.+|++.+.+..+.. ...... ++.+++++|++... . ..++.++... . .....
T Consensus 50 ~----G~~-~p~~G~i~~~~~~~~~--~~~~~~-~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~ 114 (490)
T PRK10938 50 A----GEL-PLLSGERQSQFSHITR--LSFEQL-QKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQD-----E--VKDPA 114 (490)
T ss_pred h----ccC-CCCCceEEECCccccc--CCHHHH-HHHhceeccCcchhhcccchhhccccHHHhccc-----c--hhHHH
Confidence 9 998 7789998776543321 111122 24589999975421 0 1111111100 0 00000
Q ss_pred ccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhh
Q psy14062 227 IIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLT 301 (388)
Q Consensus 227 ~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~ 301 (388)
.+. ..+...++....++++..|||||+||+.||++|+. +|++|||||||++| +.+.+.+.++++++.
T Consensus 115 ~~~-~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~- 186 (490)
T PRK10938 115 RCE-QLAQQFGITALLDRRFKYLSTGETRKTLLCQALMS------EPDLLILDEPFDGLDVASRQQLAELLASLHQSGI- 186 (490)
T ss_pred HHH-HHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCC-
Confidence 000 12222233334567899999999999999999999 99999999999999 777888888776654
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q psy14062 302 RVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 302 ~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+++++||+++.+.+.||++...
T Consensus 187 tvii~tH~~~~~~~~~d~v~~l 208 (490)
T PRK10938 187 TLVLVLNRFDEIPDFVQFAGVL 208 (490)
T ss_pred eEEEEeCCHHHHHhhCCEEEEE
Confidence 5999999999999999876443
No 234
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=7.3e-27 Score=211.89 Aligned_cols=166 Identities=11% Similarity=0.064 Sum_probs=123.7
Q ss_pred cEEEEEEEeeceEEecC----ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhh
Q psy14062 74 RLIITKIVAFNFKSYAG----YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSN 149 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~----~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKST 149 (388)
.+.+.++. ++|++ +.++ +++||++.+ |++++|+|||||||||
T Consensus 3 ~l~~~~l~----~~~~~~~~~~~~l--------~~vs~~i~~----------------------Ge~~~l~G~nGsGKST 48 (192)
T cd03232 3 VLTWKNLN----YTVPVKGGKRQLL--------NNISGYVKP----------------------GTLTALMGESGAGKTT 48 (192)
T ss_pred EEEEeeeE----EEecCCCCceEeE--------EccEEEEeC----------------------CcEEEEECCCCCCHHH
Confidence 56666776 67864 4454 499999999 9999999999999999
Q ss_pred HHhhhhhcccEEEc-CCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccccc
Q psy14062 150 VIDSMLFRFNAIIG-PNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEII 228 (388)
Q Consensus 150 Ll~~i~~~~ngIiG-pngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~ 228 (388)
|+++|+ |+.- ++.+|++.+++..+. ... .+.+++++|.+..++..+..++..+. .
T Consensus 49 Ll~~l~----G~~~~~~~~G~i~~~g~~~~------~~~-~~~i~~~~q~~~~~~~~tv~~~l~~~------------~- 104 (192)
T cd03232 49 LLDVLA----GRKTAGVITGEILINGRPLD------KNF-QRSTGYVEQQDVHSPNLTVREALRFS------------A- 104 (192)
T ss_pred HHHHHh----CCCcCCCcceEEEECCEehH------HHh-hhceEEecccCccccCCcHHHHHHHH------------H-
Confidence 999999 8641 367999887765442 122 34689999987655544433221100 0
Q ss_pred CCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHH
Q psy14062 229 PGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRV 303 (388)
Q Consensus 229 ~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~i 303 (388)
.+ ..|||||+||+.+|++|+. +|+++|+|||+++| ..+...+.++++.+. ++
T Consensus 105 ---~~-------------~~LSgGe~qrv~la~al~~------~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~-ti 161 (192)
T cd03232 105 ---LL-------------RGLSVEQRKRLTIGVELAA------KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQ-AI 161 (192)
T ss_pred ---HH-------------hcCCHHHhHHHHHHHHHhc------CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCC-EE
Confidence 00 0899999999999999999 99999999999999 667777777765544 59
Q ss_pred HHHHHhHH-HHHHHHHHH
Q psy14062 304 QLVETDLK-ALEPELRKA 320 (388)
Q Consensus 304 i~vtH~l~-~l~~~~d~~ 320 (388)
+++||+++ .+...+|++
T Consensus 162 iivtH~~~~~~~~~~d~i 179 (192)
T cd03232 162 LCTIHQPSASIFEKFDRL 179 (192)
T ss_pred EEEEcCChHHHHhhCCEE
Confidence 99999998 467777654
No 235
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.92 E-value=3.7e-23 Score=232.00 Aligned_cols=249 Identities=29% Similarity=0.452 Sum_probs=191.7
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
|++..|.+.|||||++++++ ||. ++|++||||||||||+++.
T Consensus 1 m~lk~i~l~gFKSF~~~~~i-~f~-----------------------------------~~~t~IvGPNGSGKSNI~D-- 42 (1163)
T COG1196 1 MYLKRIELKGFKSFADPTEI-NFS-----------------------------------PGFTAIVGPNGSGKSNIVD-- 42 (1163)
T ss_pred CeeeEEEEECcccCCCCeee-ecC-----------------------------------CCCeEEECCCCCchHHHHH--
Confidence 57889999999999996665 666 8899777766666655555
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCcc-chhhhhccceeEecc-cCCCCCcceEEEEEEeccccCCCCccccccCCce
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHK-SDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~-~~~lr~~~i~~l~q~-~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~ 232 (388)
|+.||+|.. .+.+|+.++.+|++. +...++.+.++|.++|.+. + ........+
T Consensus 43 --------------------Ai~fVLG~~s~k~lRa~~~~DlIf~g~~~r~~~~~A~V~l~fdN~----d-~~~~~~~~e 97 (1163)
T COG1196 43 --------------------AIRFVLGEQSAKNLRASKMSDLIFAGSGNRKPANYAEVELTFDNS----D-NTLPLEYEE 97 (1163)
T ss_pred --------------------HHHHHhCcchhhhhhccCCcceeeCCCCCCCCCCceEEEEEEeCC----C-CcCCcccce
Confidence 445777776 566899998766555 4445778889999999532 2 112223337
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH------------HHHHhhh--HHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM------------EVLYGKY--DEERTE 298 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L------------e~i~~~l--~el~~e 298 (388)
+.+.|.....+.+.|++||..+++.+|...|..+|++..+| .+|+|+-++.+ ++++|.. +..+.+
T Consensus 98 i~v~Rri~r~g~S~Y~INg~~~~~~dI~~l~~~~gi~~~~~-~iV~QG~V~~i~~~kp~err~iiEEaaGv~~y~~r~~e 176 (1163)
T COG1196 98 ISVTRRIYRDGESEYYINGEKVRLKDIQDLLADSGIGKESY-SIVSQGKVEEIINAKPEERRKLIEEAAGVSKYKERKEE 176 (1163)
T ss_pred EEEEEEEEEcCCcEEEECCcEeeHHHHHHHHHhcCCCCCCC-ceeecccHHHHHcCCHHHHHHHHHHHhchHHHHHHHHH
Confidence 88888888888899999999999999999999999999888 99999887766 5565522 222211
Q ss_pred ----------hhhH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14062 299 ----------KLTR----VQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELT 364 (388)
Q Consensus 299 ----------~~~~----ii~vtH~l~~l~~~~d~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~el~ 364 (388)
+..+ +-.+...++.++.+++.+.+|+.++++++.++..+++++|.++..+++++..++..+++++.
T Consensus 177 a~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 256 (1163)
T COG1196 177 AERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELE 256 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112 23456678899999999999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q psy14062 365 ANLESIKKCTDEMESAKTELKTV 387 (388)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~ 387 (388)
.+..++.+..++++.++.++.++
T Consensus 257 ~~~~~~~~~~~~i~~~~~~~~e~ 279 (1163)
T COG1196 257 ELQEELEEAEKEIEELKSELEEL 279 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877777777766553
No 236
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.92 E-value=2.9e-27 Score=218.66 Aligned_cols=189 Identities=16% Similarity=0.181 Sum_probs=129.3
Q ss_pred EEEEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 75 LIITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 75 l~i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+.+.+++ ++|++ +.+ ++|+||+|.+ |++++|+||||||||||++
T Consensus 3 l~~~~l~----~~~~~~~~~~--------l~~i~~~i~~----------------------G~~~~i~G~nGsGKSTLl~ 48 (220)
T cd03245 3 IEFRNVS----FSYPNQEIPA--------LDNVSLTIRA----------------------GEKVAIIGRVGSGKSTLLK 48 (220)
T ss_pred EEEEEEE----EEcCCCCccc--------ccceEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 5566666 67865 334 4499999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCce
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~ 232 (388)
+|+ |+. ++.+|++.+.+..+.-. ..... ++.+++++|++..++ .+..+........ ....... ..
T Consensus 49 ~i~----G~~-~~~~G~i~~~g~~~~~~--~~~~~-~~~i~~~~q~~~~~~-~tv~e~l~~~~~~--~~~~~~~----~~ 113 (220)
T cd03245 49 LLA----GLY-KPTSGSVLLDGTDIRQL--DPADL-RRNIGYVPQDVTLFY-GTLRDNITLGAPL--ADDERIL----RA 113 (220)
T ss_pred HHh----cCc-CCCCCeEEECCEEhHHC--CHHHH-HhhEEEeCCCCcccc-chHHHHhhcCCCC--CCHHHHH----HH
Confidence 999 998 77899988876544211 11122 346999999987664 3444332211100 0000000 00
Q ss_pred EEEEEEeeeC-----------CCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHH
Q psy14062 233 LEIARTAFYD-----------NSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEER 296 (388)
Q Consensus 233 l~~~r~~~~~-----------~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~ 296 (388)
+...++.... ......|||||+||+.||++|+. +|+++||||||++| ..+.+.+.++.
T Consensus 114 l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 187 (220)
T cd03245 114 AELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN------DPPILLLDEPTSAMDMNSEERLKERLRQLL 187 (220)
T ss_pred HHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc------CCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 1111111111 12356899999999999999999 99999999999999 66777777765
Q ss_pred HHhhhHHHHHHHhHHHHHHHHHHHH
Q psy14062 297 TEKLTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 297 ~e~~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
++ .+++++||+++.+ +.+|++.
T Consensus 188 ~~--~tii~~sH~~~~~-~~~d~v~ 209 (220)
T cd03245 188 GD--KTLIIITHRPSLL-DLVDRII 209 (220)
T ss_pred CC--CEEEEEeCCHHHH-HhCCEEE
Confidence 54 3699999999976 5777653
No 237
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.2e-27 Score=224.93 Aligned_cols=202 Identities=16% Similarity=0.179 Sum_probs=141.0
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
|++.+.++. ++|+++.++. ||||+|.+ |++++|+||||||||||++
T Consensus 9 ~~i~~~~~~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~ 54 (257)
T PRK14246 9 DVFNISRLY----LYINDKAILK--------DITIKIPN----------------------NSIFGIMGPSGSGKSTLLK 54 (257)
T ss_pred hheeeeeEE----EecCCceeEe--------ceEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 567788888 8999887765 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccch----hhhhccceeEecccCCCCCcceEEEEEEeccccCC-CCccc-c
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRAS----KIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK-PNEEY-E 226 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~----~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~-~~~~~-~ 226 (388)
+|+ |+. ++.+|++.+.|... +.|.+.. ...+..+++++|++..++..+..++........+. ..... .
T Consensus 55 ~ia----G~~-~~~~G~v~~~G~~~-~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~ 128 (257)
T PRK14246 55 VLN----RLI-EIYDSKIKVDGKVL-YFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKK 128 (257)
T ss_pred HHh----CCC-CCCcCceeEcCEEE-ECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHH
Confidence 999 988 77788776655432 2333221 11235699999998877766654332211110010 00000 0
Q ss_pred ccCCceEEEEEEe----eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHH
Q psy14062 227 IIPGTDLEIARTA----FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERT 297 (388)
Q Consensus 227 ~~~~~~l~~~r~~----~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~ 297 (388)
... ..+...+.. ...+..+..||+||+||+.||++|.. +|+++|+|||+++| ..+...+.++++
T Consensus 129 ~~~-~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~------~P~llllDEPt~~LD~~~~~~l~~~l~~~~~ 201 (257)
T PRK14246 129 IVE-ECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALAL------KPKVLLMDEPTSMIDIVNSQAIEKLITELKN 201 (257)
T ss_pred HHH-HHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHc------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc
Confidence 000 011111211 12346788999999999999999999 99999999999999 667777777754
Q ss_pred HhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 298 EKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 298 e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+ .+++++||+++.+...|+++...
T Consensus 202 -~-~tiilvsh~~~~~~~~~d~v~~l 225 (257)
T PRK14246 202 -E-IAIVIVSHNPQQVARVADYVAFL 225 (257)
T ss_pred -C-cEEEEEECCHHHHHHhCCEEEEE
Confidence 3 46999999999999998876433
No 238
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=8.2e-27 Score=221.91 Aligned_cols=205 Identities=17% Similarity=0.209 Sum_probs=140.5
Q ss_pred CCCcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 71 TGPRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 71 ~~~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
..+++.+.+++ ++|+++.++. |+||+|.+ |++++|+||||||||||
T Consensus 13 ~~~~l~~~~l~----~~~~~~~vl~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTL 58 (265)
T PRK14252 13 TQQKSEVNKLN----FYYGGYQALK--------NINMMVHE----------------------KQVTALIGPSGCGKSTF 58 (265)
T ss_pred CCceEEEEEEE----EEECCeeeee--------eeEEEEcC----------------------CcEEEEECCCCCCHHHH
Confidence 34567777777 7898766655 99999999 99999999999999999
Q ss_pred HhhhhhcccEEEcC-C---CCCcceeehhhhhhcCccc-hhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc
Q psy14062 151 IDSMLFRFNAIIGP-N---GSGKSNVIDSMLFVFGYRA-SKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY 225 (388)
Q Consensus 151 l~~i~~~~ngIiGp-n---gSGKs~i~da~i~vlg~~~-~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~ 225 (388)
+++|+ |+.-| + .+|++.+.+..+...+... ...+++.+++++|.+..++. +..++........+......
T Consensus 59 l~~l~----Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~ 133 (265)
T PRK14252 59 LRCFN----RMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSI 133 (265)
T ss_pred HHHHh----cccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHH
Confidence 99999 98743 2 5899888775443222211 11234569999999877664 44332211101011000000
Q ss_pred --cccCCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHH
Q psy14062 226 --EIIPGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDE 294 (388)
Q Consensus 226 --~~~~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~e 294 (388)
.... ..+...+. ....+..+..|||||+||+.||++|+. +|+++|+|||+++| +.+...+.+
T Consensus 134 ~~~~~~-~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~------~p~llllDEPt~gLD~~~~~~l~~~l~~ 206 (265)
T PRK14252 134 LEERVE-NALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALAT------DPEILLFDEPTSALDPIATASIEELISD 206 (265)
T ss_pred HHHHHH-HHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHc------CCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 0000 01111111 112356778999999999999999999 99999999999999 667777777
Q ss_pred HHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 295 ERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 295 l~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
++. + .+++++||+++.+.+.+|++...
T Consensus 207 l~~-~-~tiiivth~~~~~~~~~d~i~~l 233 (265)
T PRK14252 207 LKN-K-VTILIVTHNMQQAARVSDYTAYM 233 (265)
T ss_pred HHh-C-CEEEEEecCHHHHHHhCCEEEEE
Confidence 754 3 35999999999999999877444
No 239
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.92 E-value=1.2e-26 Score=210.94 Aligned_cols=167 Identities=14% Similarity=0.131 Sum_probs=124.6
Q ss_pred cEEEEEEEeeceEEecC------ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCCh
Q psy14062 74 RLIITKIVAFNFKSYAG------YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGK 147 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~------~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGK 147 (388)
.+.+.+++ ++|++ ..+ |+++||+|.+ |++++|+|||||||
T Consensus 3 ~l~~~~ls----~~~~~~~~~~~~~~--------l~~~~~~i~~----------------------Ge~~~l~G~nGsGK 48 (194)
T cd03213 3 TLSFRNLT----VTVKSSPSKSGKQL--------LKNVSGKAKP----------------------GELTAIMGPSGAGK 48 (194)
T ss_pred EEEEEeeE----EEEecCCCcccccc--------eecceEEEcC----------------------CcEEEEECCCCCCH
Confidence 46667777 67865 344 4599999999 99999999999999
Q ss_pred hhHHhhhhhcccEEE-cCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccc
Q psy14062 148 SNVIDSMLFRFNAII-GPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYE 226 (388)
Q Consensus 148 STLl~~i~~~~ngIi-GpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~ 226 (388)
|||+++|+ |+. .++.+|++.++|..+.. ... .+.+++++|++..++..+..++....
T Consensus 49 StLl~~i~----Gl~~~~~~~G~i~~~g~~~~~-----~~~-~~~i~~~~q~~~~~~~~t~~~~i~~~------------ 106 (194)
T cd03213 49 STLLNALA----GRRTGLGVSGEVLINGRPLDK-----RSF-RKIIGYVPQDDILHPTLTVRETLMFA------------ 106 (194)
T ss_pred HHHHHHHh----CCCCCCCCceEEEECCEeCch-----Hhh-hheEEEccCcccCCCCCcHHHHHHHH------------
Confidence 99999999 887 14568998877654321 122 34589999987665544433211000
Q ss_pred ccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhh
Q psy14062 227 IIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLT 301 (388)
Q Consensus 227 ~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~ 301 (388)
. ..+.|||||+||+.+|++|+. +|+++|+|||+++| +.+...+.++.+++.
T Consensus 107 ~-----------------~~~~LS~G~~qrv~laral~~------~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~- 162 (194)
T cd03213 107 A-----------------KLRGLSGGERKRVSIALELVS------NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGR- 162 (194)
T ss_pred H-----------------HhccCCHHHHHHHHHHHHHHc------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC-
Confidence 0 001899999999999999999 99999999999999 667777777765544
Q ss_pred HHHHHHHhHH-HHHHHHHHH
Q psy14062 302 RVQLVETDLK-ALEPELRKA 320 (388)
Q Consensus 302 ~ii~vtH~l~-~l~~~~d~~ 320 (388)
+++++||++. .+.+.+|++
T Consensus 163 tiii~sh~~~~~~~~~~d~v 182 (194)
T cd03213 163 TIICSIHQPSSEIFELFDKL 182 (194)
T ss_pred EEEEEecCchHHHHHhcCEE
Confidence 5999999996 677777764
No 240
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=4.1e-27 Score=219.62 Aligned_cols=194 Identities=15% Similarity=0.163 Sum_probs=132.6
Q ss_pred EEEEEEeeceEEecCc--eeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 76 IITKIVAFNFKSYAGY--VTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 76 ~i~~l~~~~fksy~~~--~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.++. ++|++. .++ +++||++.+ |++++|+||||||||||+++
T Consensus 2 ~~~~l~----~~~~~~~~~~l--------~~i~~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~ 47 (234)
T cd03251 2 EFKNVT----FRYPGDGPPVL--------RDISLDIPA----------------------GETVALVGPSGSGKSTLVNL 47 (234)
T ss_pred EEEEEE----EEeCCCCccce--------eeeeEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 345555 678764 444 499999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccc----cC
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEI----IP 229 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~----~~ 229 (388)
|+ |++ ++.+|++.++|..+.-. ..... ++.+++++|++..++ .++.++...+.. ......... ..
T Consensus 48 l~----Gl~-~p~~G~i~~~g~~~~~~--~~~~~-~~~i~~~~q~~~~~~-~tv~enl~~~~~--~~~~~~~~~~~~~~~ 116 (234)
T cd03251 48 IP----RFY-DVDSGRILIDGHDVRDY--TLASL-RRQIGLVSQDVFLFN-DTVAENIAYGRP--GATREEVEEAARAAN 116 (234)
T ss_pred Hh----ccc-cCCCCEEEECCEEhhhC--CHHHH-HhhEEEeCCCCeecc-ccHHHHhhccCC--CCCHHHHHHHHHHcC
Confidence 99 998 77899988877544211 11122 346999999977664 344433222111 000000000 00
Q ss_pred -CceEEEE--EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhh
Q psy14062 230 -GTDLEIA--RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLT 301 (388)
Q Consensus 230 -~~~l~~~--r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~ 301 (388)
...+... +.....+..+..||+||+||+.||++|+. +|+++|||||+++| +.+...+.++.+ +.
T Consensus 117 ~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~------~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~- 188 (234)
T cd03251 117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLK------DPPILILDEATSALDTESERLVQAALERLMK-NR- 188 (234)
T ss_pred cHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhc------CCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CC-
Confidence 0001000 11222345688999999999999999999 99999999999999 667777777654 44
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q psy14062 302 RVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 302 ~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+++++||+++.+.. ||++..+
T Consensus 189 tii~~sh~~~~~~~-~d~v~~l 209 (234)
T cd03251 189 TTFVIAHRLSTIEN-ADRIVVL 209 (234)
T ss_pred EEEEEecCHHHHhh-CCEEEEe
Confidence 59999999999875 8876444
No 241
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.4e-27 Score=221.97 Aligned_cols=201 Identities=16% Similarity=0.210 Sum_probs=136.2
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|+++.++. ++||+|.+ |++++|+||||||||||+++
T Consensus 5 ~l~~~~l~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~ 50 (252)
T PRK14255 5 IITSSDVH----LFYGKFEALK--------GIDLDFNQ----------------------NEITALIGPSGCGKSTYLRT 50 (252)
T ss_pred eEEEEeEE----EEECCeeEEe--------cceEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 45666666 6798766654 99999999 99999999999999999999
Q ss_pred hhhcccEEEc-CC---CCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc--ccc
Q psy14062 154 MLFRFNAIIG-PN---GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE--YEI 227 (388)
Q Consensus 154 i~~~~ngIiG-pn---gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~--~~~ 227 (388)
|+ |+.. ++ .+|++.+.|..+.......... .+.+++++|++..++ .+..++........+..... ...
T Consensus 51 l~----Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~ 124 (252)
T PRK14255 51 LN----RMNDLIPGVTITGNVSLRGQNIYAPNEDVVQL-RKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEA 124 (252)
T ss_pred Hh----cccccCCCCCcccEEEEcCEEcccccccHHHh-cCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHH
Confidence 99 8863 13 4899888775443111111122 346999999987665 34433321110111100000 000
Q ss_pred cCCceEEEEE----EeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 228 IPGTDLEIAR----TAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 228 ~~~~~l~~~r----~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
.. ..+...+ .....+..+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.++.++
T Consensus 125 ~~-~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 197 (252)
T PRK14255 125 VE-TSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAV------KPDVILLDEPTSALDPISSTQIENMLLELRDQ 197 (252)
T ss_pred HH-HHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhc------CCCEEEEcCCCccCCHHHHHHHHHHHHHHHhC
Confidence 00 0000011 1123456788999999999999999999 99999999999999 6677777777553
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
.+++++||+++.+.+.+|++..+
T Consensus 198 --~tii~vsH~~~~~~~~~d~i~~l 220 (252)
T PRK14255 198 --YTIILVTHSMHQASRISDKTAFF 220 (252)
T ss_pred --CEEEEEECCHHHHHHhCCEEEEE
Confidence 36999999999999998876433
No 242
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.92 E-value=2e-26 Score=211.18 Aligned_cols=182 Identities=18% Similarity=0.224 Sum_probs=131.6
Q ss_pred CcEEEEEEEeeceEEecCc--eeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 73 PRLIITKIVAFNFKSYAGY--VTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~--~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
+.+.+.++. ++|++. .+ ++++||+|.+ |++++|+||||||||||
T Consensus 5 ~~l~~~~l~----~~~~~~~~~~--------l~~isl~i~~----------------------G~~~~i~G~nGsGKSTL 50 (207)
T cd03369 5 GEIEVENLS----VRYAPDLPPV--------LKNVSFKVKA----------------------GEKIGIVGRTGAGKSTL 50 (207)
T ss_pred CeEEEEEEE----EEeCCCCccc--------ccCceEEECC----------------------CCEEEEECCCCCCHHHH
Confidence 356777777 778752 34 4599999999 99999999999999999
Q ss_pred HhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCC
Q psy14062 151 IDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPG 230 (388)
Q Consensus 151 l~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~ 230 (388)
+++|+ |+. ++.+|++.+.|..+.- ...... ++.+++++|++..++. +..++...+. .... ....
T Consensus 51 l~~l~----Gl~-~~~~G~i~~~g~~~~~--~~~~~~-~~~i~~v~q~~~~~~~-tv~~~l~~~~----~~~~--~~~~- 114 (207)
T cd03369 51 ILALF----RFL-EAEEGKIEIDGIDIST--IPLEDL-RSSLTIIPQDPTLFSG-TIRSNLDPFD----EYSD--EEIY- 114 (207)
T ss_pred HHHHh----ccc-CCCCCeEEECCEEhHH--CCHHHH-HhhEEEEecCCcccCc-cHHHHhcccC----CCCH--HHHH-
Confidence 99999 998 8889998887764421 111122 3469999999876653 5444332221 0000 0000
Q ss_pred ceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 231 TDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 231 ~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
..+. .+..+..|||||+||+.+|++|.. +|+++|+|||+++| +.+..+++++.+ +. ++++
T Consensus 115 ~~l~-------~~~~~~~LS~G~~qrv~laral~~------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~-tiii 179 (207)
T cd03369 115 GALR-------VSEGGLNLSQGQRQLLCLARALLK------RPRVLVLDEATASIDYATDALIQKTIREEFT-NS-TILT 179 (207)
T ss_pred HHhh-------ccCCCCcCCHHHHHHHHHHHHHhh------CCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CC-EEEE
Confidence 0111 245678999999999999999999 99999999999999 566667776643 43 5899
Q ss_pred HHHhHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKA 320 (388)
Q Consensus 306 vtH~l~~l~~~~d~~ 320 (388)
+||+++.+.. +|++
T Consensus 180 ~th~~~~~~~-~d~v 193 (207)
T cd03369 180 IAHRLRTIID-YDKI 193 (207)
T ss_pred EeCCHHHHhh-CCEE
Confidence 9999998865 6654
No 243
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5e-27 Score=221.22 Aligned_cols=200 Identities=15% Similarity=0.218 Sum_probs=135.4
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|+++.+++ ++||+|.+ |++++|+||||||||||+++
T Consensus 3 ~l~~~~l~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~ 48 (249)
T PRK14253 3 KFNIENLD----LFYGENQALK--------SINLPIPA----------------------RQVTALIGPSGCGKSTLLRC 48 (249)
T ss_pred eEEEeccE----EEECCeeeee--------cceEEecC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 34555555 6788766654 99999999 99999999999999999999
Q ss_pred hhhcccEEEcC----CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCc-cc-cc
Q psy14062 154 MLFRFNAIIGP----NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNE-EY-EI 227 (388)
Q Consensus 154 i~~~~ngIiGp----ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~-~~-~~ 227 (388)
|+ |+.-| +.+|++.+.+..+.. ....... ++.++|++|++..++ .++.++........+.... .. ..
T Consensus 49 l~----Gl~~~~~~~~~~G~v~~~g~~~~~-~~~~~~~-~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~ 121 (249)
T PRK14253 49 LN----RMNDLIEGVKITGKLTMDGEDIYG-NIDVADL-RIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEV 121 (249)
T ss_pred HH----hhcccccCCCCceEEEECCEEccc-ccchHHH-HhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHH
Confidence 99 98733 358998877654321 1111223 346999999987765 4443322211111110000 00 00
Q ss_pred cCCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 228 IPGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 228 ~~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
+. ..+...++ ....+.++..|||||+||+.||++|+. +|+++|+|||+++| ..+...+.++.+.
T Consensus 122 ~~-~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 194 (249)
T PRK14253 122 VE-RSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM------EPDVILMDEPTSALDPIATHKIEELMEELKKN 194 (249)
T ss_pred HH-HHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC
Confidence 00 00111111 122356778999999999999999999 99999999999999 6677777777653
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
.+++++||+++.+...+|++...
T Consensus 195 --~tii~~sh~~~~~~~~~d~i~~l 217 (249)
T PRK14253 195 --YTIVIVTHSMQQARRISDRTAFF 217 (249)
T ss_pred --CeEEEEecCHHHHHHhCCEEEEE
Confidence 36999999999999999876433
No 244
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.92 E-value=8e-27 Score=216.64 Aligned_cols=197 Identities=15% Similarity=0.135 Sum_probs=134.6
Q ss_pred CCcEEEEEEEeeceEEecCc---eeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChh
Q psy14062 72 GPRLIITKIVAFNFKSYAGY---VTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKS 148 (388)
Q Consensus 72 ~~~l~i~~l~~~~fksy~~~---~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKS 148 (388)
.+++.+.+++ ++|++. .+ |+++||+|.+ |++++|+||||||||
T Consensus 9 ~~~l~~~~l~----~~~~~~~~~~~--------l~~is~~i~~----------------------Ge~~~i~G~nGsGKS 54 (226)
T cd03248 9 KGIVKFQNVT----FAYPTRPDTLV--------LQDVSFTLHP----------------------GEVTALVGPSGSGKS 54 (226)
T ss_pred CceEEEEEEE----EEeCCCCCCcc--------ccceEEEEcC----------------------CCEEEEECCCCCCHH
Confidence 3567788888 788652 34 4499999999 999999999999999
Q ss_pred hHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCC--Ccccc
Q psy14062 149 NVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKP--NEEYE 226 (388)
Q Consensus 149 TLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~--~~~~~ 226 (388)
||+++|+ |++ ++.+|++.+.+..+.-. ....+.+.+++++|++..++ .+..++........... .....
T Consensus 55 TLl~~l~----Gl~-~~~~G~i~~~g~~~~~~---~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~ 125 (226)
T cd03248 55 TVVALLE----NFY-QPQGGQVLLDGKPISQY---EHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQ 125 (226)
T ss_pred HHHHHHh----cCc-CCCCcEEEECCCchHHc---CHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHH
Confidence 9999999 998 88899988877544311 11223456999999876654 24333222110000000 00000
Q ss_pred cc-CCceEEEE--EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 227 II-PGTDLEIA--RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 227 ~~-~~~~l~~~--r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
.. ....+... +.....+..+..|||||+||+.||++|.. +|+++|||||+++| +.+...+.++.+
T Consensus 126 ~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~- 198 (226)
T cd03248 126 KAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR------NPQVLILDEATSALDAESEQQVQQALYDWPE- 198 (226)
T ss_pred HcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-
Confidence 00 00111111 22223456688999999999999999999 99999999999999 666677777654
Q ss_pred hhhHHHHHHHhHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
+ .+++++||+++.+.. +|++
T Consensus 199 ~-~tii~~sh~~~~~~~-~d~i 218 (226)
T cd03248 199 R-RTVLVIAHRLSTVER-ADQI 218 (226)
T ss_pred C-CEEEEEECCHHHHHh-CCEE
Confidence 3 369999999998864 7654
No 245
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.1e-27 Score=221.44 Aligned_cols=202 Identities=12% Similarity=0.169 Sum_probs=135.9
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|+++.++. ||||+|.+ |++++|+||||||||||+++|
T Consensus 5 l~~~~l~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~i 50 (252)
T PRK14272 5 LSAQDVN----IYYGDKQAVK--------NVNLDVQR----------------------GTVNALIGPSGCGKTTFLRAI 50 (252)
T ss_pred EEEeeeE----EEECCEEeec--------cceEEEcC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 3445555 6798766654 99999999 999999999999999999999
Q ss_pred hhcccEEEcCC----CCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc--cccc
Q psy14062 155 LFRFNAIIGPN----GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE--YEII 228 (388)
Q Consensus 155 ~~~~ngIiGpn----gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~--~~~~ 228 (388)
+ |++-|+ .+|++.+.|..+.-...... .+++.++|++|++..++..+..++.............. ....
T Consensus 51 ~----G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~ 125 (252)
T PRK14272 51 N----RMHDLTPGARVTGRILLDGQDIYGPRVDPV-AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVA 125 (252)
T ss_pred h----ccCCCCcCCCCceeEEECCEEcccCccCHH-HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 9 987332 37998887754421101111 22346999999988776655543321110111100000 0000
Q ss_pred CC--ceEEEE-EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhh
Q psy14062 229 PG--TDLEIA-RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKL 300 (388)
Q Consensus 229 ~~--~~l~~~-r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~ 300 (388)
.. ..+.+. ......+.++..|||||+||+.+|++|.. +|+++|+|||+++| +.+...++++++ +
T Consensus 126 ~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~- 197 (252)
T PRK14272 126 ERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAV------EPEILLMDEPTSALDPASTARIEDLMTDLKK-V- 197 (252)
T ss_pred HHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhc------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C-
Confidence 00 000000 01112356788999999999999999999 99999999999999 667777777754 3
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 301 TRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 301 ~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
.+++++||+++.+...+|++..+
T Consensus 198 ~tiii~sH~~~~~~~~~d~i~~l 220 (252)
T PRK14272 198 TTIIIVTHNMHQAARVSDTTSFF 220 (252)
T ss_pred CeEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999998876443
No 246
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.2e-27 Score=221.41 Aligned_cols=192 Identities=16% Similarity=0.195 Sum_probs=130.2
Q ss_pred EEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEc--
Q psy14062 86 KSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIG-- 163 (388)
Q Consensus 86 ksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiG-- 163 (388)
++|+++.++. |+||+|.+ |++++|+||||||||||+++|+ |+..
T Consensus 13 ~~~~~~~~l~--------~is~~i~~----------------------Ge~~~I~G~nGsGKSTLl~~i~----G~~~~~ 58 (251)
T PRK14244 13 LWYGSKQILF--------DINLDIYK----------------------REVTAFIGPSGCGKSTFLRCFN----RMNDFV 58 (251)
T ss_pred EEECCeeeee--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHHHHH----hhcccC
Confidence 5687766654 99999999 9999999999999999999999 9873
Q ss_pred C--CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCc--cccccCCceEEEEEEe
Q psy14062 164 P--NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNE--EYEIIPGTDLEIARTA 239 (388)
Q Consensus 164 p--ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~--~~~~~~~~~l~~~r~~ 239 (388)
| +.+|++.+.|..+.-........ ++.++|+||++..++. +..++........+.... .........+...++.
T Consensus 59 ~~~~~~G~i~~~g~~i~~~~~~~~~~-~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 136 (251)
T PRK14244 59 PNCKVKGELDIDGIDVYSVDTNVVLL-RAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLW 136 (251)
T ss_pred CCCCcceEEEECCEehHhcccchHHH-hhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCC
Confidence 2 35899888775443111111112 3569999999877654 433322111011111000 0000000011111211
Q ss_pred ----eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhH
Q psy14062 240 ----FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDL 310 (388)
Q Consensus 240 ----~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l 310 (388)
...+..+..|||||+||+.||++|.. +|+++|+|||+++| +.+...+.++.+ + .+++++||++
T Consensus 137 ~~~~~~~~~~~~~LS~Gq~qrv~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tiiiisH~~ 208 (251)
T PRK14244 137 EELGDRLKDSAFELSGGQQQRLCIARAIAV------KPTMLLMDEPCSALDPVATNVIENLIQELKK-N-FTIIVVTHSM 208 (251)
T ss_pred chhhhHhhcChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C-CeEEEEeCCH
Confidence 12245678999999999999999999 99999999999999 667777777753 4 3599999999
Q ss_pred HHHHHHHHHHH
Q psy14062 311 KALEPELRKAV 321 (388)
Q Consensus 311 ~~l~~~~d~~~ 321 (388)
+.+.+.+|++.
T Consensus 209 ~~~~~~~d~i~ 219 (251)
T PRK14244 209 KQAKKVSDRVA 219 (251)
T ss_pred HHHHhhcCEEE
Confidence 99999988763
No 247
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=5.8e-27 Score=212.97 Aligned_cols=182 Identities=13% Similarity=0.140 Sum_probs=125.2
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|+++.++ ++||+|.+ |++++|+||||||||||+++|
T Consensus 2 l~~~~l~----~~~~~~~l~---------~vs~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~l 46 (195)
T PRK13541 2 LSLHQLQ----FNIEQKNLF---------DLSITFLP----------------------SAITYIKGANGCGKSSLLRMI 46 (195)
T ss_pred eEEEEee----EEECCcEEE---------EEEEEEcC----------------------CcEEEEECCCCCCHHHHHHHH
Confidence 4456666 678764432 69999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEE
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLE 234 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~ 234 (388)
+ |+. ++.+|++.++|..+. ......+++++|.+..++..+..++...+...+... .. .. ..+.
T Consensus 47 ~----G~~-~~~~G~i~~~g~~i~-------~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~-~~---~~-~~l~ 109 (195)
T PRK13541 47 A----GIM-QPSSGNIYYKNCNIN-------NIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSA-ET---LY-AAIH 109 (195)
T ss_pred h----cCC-CCCCcEEEECCcccC-------hhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcccH-HH---HH-HHHH
Confidence 9 998 778999877765432 112234788888765555555443322211111110 00 00 1111
Q ss_pred EEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHh
Q psy14062 235 IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETD 309 (388)
Q Consensus 235 ~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~ 309 (388)
..+.....++.+..|||||+||+.+|++|+. +|+++|+|||+++| +.+...+.+..+.+. +++++||+
T Consensus 110 ~~~l~~~~~~~~~~LS~G~~~rl~la~al~~------~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~-tiii~sh~ 182 (195)
T PRK13541 110 YFKLHDLLDEKCYSLSSGMQKIVAIARLIAC------QSDLWLLDEVETNLSKENRDLLNNLIVMKANSGG-IVLLSSHL 182 (195)
T ss_pred HcCCHhhhccChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 2222223456788999999999999999999 99999999999999 556666665444444 59999999
Q ss_pred HHHHHH
Q psy14062 310 LKALEP 315 (388)
Q Consensus 310 l~~l~~ 315 (388)
+..++.
T Consensus 183 ~~~i~~ 188 (195)
T PRK13541 183 ESSIKS 188 (195)
T ss_pred ccccch
Confidence 877654
No 248
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.6e-26 Score=222.75 Aligned_cols=198 Identities=16% Similarity=0.226 Sum_probs=137.1
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|+++.+|. ++||+|.+ |++++|+||||||||||+++
T Consensus 45 ~l~i~nl~----~~~~~~~iL~--------~is~~i~~----------------------Ge~~~IvG~nGsGKSTLl~~ 90 (305)
T PRK14264 45 KLSVEDLD----VYYGDDHALK--------GVSMDIPE----------------------KSVTALIGPSGCGKSTFLRC 90 (305)
T ss_pred eEEEEEEE----EEeCCeeeee--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 56677777 7798766654 99999999 99999999999999999999
Q ss_pred hhhcccEEEcC----CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEecccc-----------
Q psy14062 154 MLFRFNAIIGP----NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQII----------- 218 (388)
Q Consensus 154 i~~~~ngIiGp----ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~----------- 218 (388)
|+ |++-| +.+|++.+.|..+.-.+......+ +.++|++|++.+++. +..++..+.....
T Consensus 91 L~----Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~-~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~ 164 (305)
T PRK14264 91 LN----RMNDRIKAARIDGSVELDGQDIYQDGVNLVELR-KRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARL 164 (305)
T ss_pred Hh----ccccccCCCCCceEEEECCEEcccccccHHHHh-hceEEEccCCccccc-cHHHHHHhHHhhcccccccccccc
Confidence 99 98732 479998887765431111112233 469999999876653 4333222110000
Q ss_pred -CCCCcc--ccccCCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----H
Q psy14062 219 -DKPNEE--YEIIPGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----E 286 (388)
Q Consensus 219 -~~~~~~--~~~~~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e 286 (388)
...... ...+. ..+...++ ....+..+..|||||+||+.||++|+. +|++||||||+++| .
T Consensus 165 ~~~~~~~~~~~~~~-~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~------~p~lLLLDEPtsgLD~~~~~ 237 (305)
T PRK14264 165 LGRDDKDAEDELVE-RSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAV------DPEVILMDEPASALDPIATS 237 (305)
T ss_pred cccCchHHHHHHHH-HHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHH
Confidence 000000 00000 01111111 112356788999999999999999999 99999999999999 6
Q ss_pred HHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 287 VLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 287 ~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
.+...|+++.++ . +++++||+++.+...++++
T Consensus 238 ~l~~~L~~~~~~-~-tiiivtH~~~~i~~~~d~i 269 (305)
T PRK14264 238 KIEDLIEELAEE-Y-TVVVVTHNMQQAARISDQT 269 (305)
T ss_pred HHHHHHHHHhcC-C-EEEEEEcCHHHHHHhcCEE
Confidence 777788877664 3 5999999999999999984
No 249
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.92 E-value=8.8e-27 Score=240.10 Aligned_cols=202 Identities=18% Similarity=0.202 Sum_probs=139.1
Q ss_pred CCcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 72 GPRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 72 ~~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
.+++.+.+++ ++|++..+|+ ||||+|.+ |++++|+||||||||||+
T Consensus 258 ~~~l~~~~l~----~~~~~~~il~--------~vsl~i~~----------------------Ge~~~i~G~NGsGKSTLl 303 (490)
T PRK10938 258 EPRIVLNNGV----VSYNDRPILH--------NLSWQVNP----------------------GEHWQIVGPNGAGKSTLL 303 (490)
T ss_pred CceEEEeceE----EEECCeeEEe--------eceEEEcC----------------------CCEEEEECCCCCCHHHHH
Confidence 3466777777 7898776655 99999999 999999999999999999
Q ss_pred hhhhhcccEEEcCC-CCCcceeehhhhhhcCccchhhhhccceeEecccCCCCC--cceEEEEEE--ec--cccCCCCc-
Q psy14062 152 DSMLFRFNAIIGPN-GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGG--VSRCSVAIH--FA--QIIDKPNE- 223 (388)
Q Consensus 152 ~~i~~~~ngIiGpn-gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~--~~~~eV~~~--~~--~~~~~~~~- 223 (388)
++|+ |+. |+ .+|++.+.|..+. .+...... ++.+++++|++..++. .+..++... +. ..+.....
T Consensus 304 ~~l~----G~~-~~~~~G~i~~~g~~~~-~~~~~~~~-~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (490)
T PRK10938 304 SLIT----GDH-PQGYSNDLTLFGRRRG-SGETIWDI-KKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDR 376 (490)
T ss_pred HHHc----CCC-CcccCCeEEEecccCC-CCCCHHHH-HhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHH
Confidence 9999 977 65 6999888775431 11111122 3469999998654322 222222110 10 00000000
Q ss_pred cccccCCceEEEEEEee-eCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHH
Q psy14062 224 EYEIIPGTDLEIARTAF-YDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERT 297 (388)
Q Consensus 224 ~~~~~~~~~l~~~r~~~-~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~ 297 (388)
....+ ...+...++.. ..++++..|||||+||+.||++|+. +|++|||||||++| +.+...+.++++
T Consensus 377 ~~~~~-~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~------~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~ 449 (490)
T PRK10938 377 QQKLA-QQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVK------HPTLLILDEPLQGLDPLNRQLVRRFVDVLIS 449 (490)
T ss_pred HHHHH-HHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhc------CCCEEEEcCccccCCHHHHHHHHHHHHHHHh
Confidence 00011 11222333333 4567889999999999999999999 99999999999999 777888888877
Q ss_pred HhhhHHHHHHHhHHHHHHH-HHHHH
Q psy14062 298 EKLTRVQLVETDLKALEPE-LRKAV 321 (388)
Q Consensus 298 e~~~~ii~vtH~l~~l~~~-~d~~~ 321 (388)
++.++|+++||+++.+.+. ++++.
T Consensus 450 ~~~~tviivsHd~~~~~~~~~d~v~ 474 (490)
T PRK10938 450 EGETQLLFVSHHAEDAPACITHRLE 474 (490)
T ss_pred cCCcEEEEEecchhhhhhhhheeEE
Confidence 6544599999999999874 66553
No 250
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.91 E-value=6.6e-26 Score=240.27 Aligned_cols=182 Identities=17% Similarity=0.169 Sum_probs=126.0
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+.+.+.+++ ++|+++.+|. +|||+|.+ |++++|+|||||||||||+
T Consensus 318 ~~l~~~~l~----~~~~~~~il~--------~vsl~i~~----------------------Ge~~~l~G~NGsGKSTLlk 363 (635)
T PRK11147 318 IVFEMENVN----YQIDGKQLVK--------DFSAQVQR----------------------GDKIALIGPNGCGKTTLLK 363 (635)
T ss_pred ceEEEeeeE----EEECCeEEEc--------CcEEEEcC----------------------CCEEEEECCCCCcHHHHHH
Confidence 356677777 7898877765 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEeccc-CCCCCcceEEEEEEeccccCCCCccccccCCc
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKS-DQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGT 231 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~-~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~ 231 (388)
+|+ |++ ++.+|++.+ +. . -.++|++|.+ .+++..++.++.............. ..+. .
T Consensus 364 ~l~----G~~-~p~~G~i~~-~~-------~------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~-~~~~-~ 422 (635)
T PRK11147 364 LML----GQL-QADSGRIHC-GT-------K------LEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRP-RHVL-G 422 (635)
T ss_pred HHh----CCC-CCCCcEEEE-CC-------C------cEEEEEeCcccccCCCCCHHHHHHhhcccccccchH-HHHH-H
Confidence 999 998 778999654 21 1 1489999875 3555555544322110000000000 0000 1
Q ss_pred eEEEEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 232 DLEIARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 232 ~l~~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
.+..+... ...++++..|||||+||+.||++|+. +|++|||||||++| +.+...+.++ .. +|++
T Consensus 423 ~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~------~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~-tvi~ 492 (635)
T PRK11147 423 YLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLK------PSNLLILDEPTNDLDVETLELLEELLDSY---QG-TVLL 492 (635)
T ss_pred HHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhc------CCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CC-eEEE
Confidence 11111221 12356789999999999999999999 99999999999999 3344444333 23 5999
Q ss_pred HHHhHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRK 319 (388)
Q Consensus 306 vtH~l~~l~~~~d~ 319 (388)
||||+..+...|++
T Consensus 493 vSHd~~~~~~~~d~ 506 (635)
T PRK11147 493 VSHDRQFVDNTVTE 506 (635)
T ss_pred EECCHHHHHHhcCE
Confidence 99999999988764
No 251
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.7e-26 Score=219.32 Aligned_cols=202 Identities=14% Similarity=0.146 Sum_probs=137.7
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+.+.+..++ ++|++..++. ++||+|++ |++++|+||||||||||++
T Consensus 7 ~~~~~~~~~----~~~~~~~~l~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~ 52 (261)
T PRK14263 7 IVMDCKLDK----IFYGNFMAVR--------DSHVPIRK----------------------NEITGFIGPSGCGKSTVLR 52 (261)
T ss_pred ceEEEEeEE----EEeCCEEEEe--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 346666666 6788766655 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcC----CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccccc
Q psy14062 153 SMLFRFNAIIGP----NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEII 228 (388)
Q Consensus 153 ~i~~~~ngIiGp----ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~ 228 (388)
+|+ |++.| +.+|++.+.|..+.-.... ....++.+++++|++..+. .+..++.................+
T Consensus 53 ~l~----Gl~~p~~~~~~~G~i~~~g~~i~~~~~~-~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~ 126 (261)
T PRK14263 53 SLN----RMNDLVKGFRFEGHVHFLGQDVYGKGVD-PVVVRRYIGMVFQQPNPFS-MSIFDNVAFGLRLNRYKGDLGDRV 126 (261)
T ss_pred HHH----cccccccCCCCceEEEECCEeccccccc-hHhhhhceEEEecCCcccc-ccHHHHHHHHHhhcCchHHHHHHH
Confidence 999 99844 2689988887654311111 1123356999999987653 444332211111100000000000
Q ss_pred CCceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 229 PGTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 229 ~~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
. ..+...++ ....+..+..|||||+||+.||++|+. +|+++|||||+++| .++...+.++++ +
T Consensus 127 ~-~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~------~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~ 198 (261)
T PRK14263 127 K-HALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIAT------EPEVLLLDEPCSALDPIATRRVEELMVELKK-D 198 (261)
T ss_pred H-HHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHc------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C
Confidence 0 01111111 012245678899999999999999999 99999999999999 777778887754 4
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
.+++++||+++.+.+.+|++.-+
T Consensus 199 -~tii~isH~~~~i~~~~d~v~~l 221 (261)
T PRK14263 199 -YTIALVTHNMQQAIRVADTTAFF 221 (261)
T ss_pred -CeEEEEeCCHHHHHHhCCEEEEE
Confidence 35999999999999999987544
No 252
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.91 E-value=1.2e-26 Score=216.87 Aligned_cols=179 Identities=15% Similarity=0.143 Sum_probs=123.5
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|+|+||++.+ |++++|+||||||||||+++|+ |+. ++.+|++.+.|..+...
T Consensus 18 l~~isl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l~----Gl~-~~~~G~i~~~g~~~~~~- 69 (237)
T cd03252 18 LDNISLRIKP----------------------GEVVGIVGRSGSGKSTLTKLIQ----RFY-VPENGRVLVDGHDLALA- 69 (237)
T ss_pred eeceEEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh----cCc-CCCCCEEEECCeehHhc-
Confidence 4499999999 9999999999999999999999 998 77899988877544321
Q ss_pred ccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cc---cC-CceEEEE--EEeeeCCCCeeeeCCccc
Q psy14062 182 YRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EI---IP-GTDLEIA--RTAFYDNSSYYTLNGKKV 254 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~---~~-~~~l~~~--r~~~~~~~~~~~LSgGq~ 254 (388)
..... ++.+++++|++..++ .++.++...... ....... .. .. ...+... +.....+.++..|||||+
T Consensus 70 -~~~~~-~~~i~~~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~ 144 (237)
T cd03252 70 -DPAWL-RRQVGVVLQENVLFN-RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQR 144 (237)
T ss_pred -CHHHH-hhcEEEEcCCchhcc-chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHH
Confidence 11122 346999999976653 344443322111 0000000 00 00 0000000 111223457889999999
Q ss_pred cHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 255 HFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 255 qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
||+.||++|+. +|+++|||||+++| +.+...+.++.+ +. +++++||+++.+. .+|++..
T Consensus 145 qrv~laral~~------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~-tiii~sH~~~~~~-~~d~v~~ 208 (237)
T cd03252 145 QRIAIARALIH------NPRILIFDEATSALDYESEHAIMRNMHDICA-GR-TVIIIAHRLSTVK-NADRIIV 208 (237)
T ss_pred HHHHHHHHHhh------CCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CC-EEEEEeCCHHHHH-hCCEEEE
Confidence 99999999999 99999999999999 667777777753 44 5999999999985 4776533
No 253
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=3.6e-26 Score=197.11 Aligned_cols=182 Identities=18% Similarity=0.147 Sum_probs=130.7
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|+++||.+.+ |++.+|+||||||||||+++++ .++ ++++|...+-|..+..++
T Consensus 19 l~~isl~v~~----------------------Ge~iaitGPSG~GKStllk~va----~Li-sp~~G~l~f~Ge~vs~~~ 71 (223)
T COG4619 19 LNNISLSVRA----------------------GEFIAITGPSGCGKSTLLKIVA----SLI-SPTSGTLLFEGEDVSTLK 71 (223)
T ss_pred ecceeeeecC----------------------CceEEEeCCCCccHHHHHHHHH----hcc-CCCCceEEEcCccccccC
Confidence 3499999999 9999999999999999999999 898 888999888877765444
Q ss_pred ccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEE-EEEEeeeCCCCeeeeCCccccHHHHH
Q psy14062 182 YRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLE-IARTAFYDNSSYYTLNGKKVHFKEVA 260 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~-~~r~~~~~~~~~~~LSgGq~qr~~Ia 260 (388)
.. .+| ..|+|+-|.|.+|+.. +.++..+.-.+.....+.... ...+. +.+-.....+....||||++||.+++
T Consensus 72 pe--a~R-q~VsY~~Q~paLfg~t-VeDNlifP~~~r~rr~dr~aa--~~llar~~l~~~~L~k~it~lSGGE~QriAli 145 (223)
T COG4619 72 PE--AYR-QQVSYCAQTPALFGDT-VEDNLIFPWQIRNRRPDRAAA--LDLLARFALPDSILTKNITELSGGEKQRIALI 145 (223)
T ss_pred hH--HHH-HHHHHHHcCccccccc-hhhccccchHHhccCCChHHH--HHHHHHcCCchhhhcchhhhccchHHHHHHHH
Confidence 32 344 4599999999998764 444444432332221111000 00111 11112234567889999999999999
Q ss_pred HHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 261 KVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 261 ~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
|-|.. .|++|+|||||++| +.|...+..+.++..-.++.+||+-+++-+.+++...
T Consensus 146 R~Lq~------~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~it 206 (223)
T COG4619 146 RNLQF------MPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVIT 206 (223)
T ss_pred HHhhc------CCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEE
Confidence 99999 99999999999999 5566666666533333488899999998887776543
No 254
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.91 E-value=9.3e-27 Score=217.85 Aligned_cols=180 Identities=14% Similarity=0.147 Sum_probs=124.4
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|+|+||++.+ |++++|+||||||||||+++|+ |++ ++.+|++.+.|..+.-.
T Consensus 19 l~~i~~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~i~----G~~-~~~~G~i~~~g~~~~~~- 70 (238)
T cd03249 19 LKGLSLTIPP----------------------GKTVALVGSSGCGKSTVVSLLE----RFY-DPTSGEILLDGVDIRDL- 70 (238)
T ss_pred eeceEEEecC----------------------CCEEEEEeCCCCCHHHHHHHHh----ccC-CCCCCEEEECCEehhhc-
Confidence 4599999999 9999999999999999999999 998 78899988887654311
Q ss_pred ccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cccC--C--ceEE-E-EEEeeeCCCCeeeeCCccc
Q psy14062 182 YRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EIIP--G--TDLE-I-ARTAFYDNSSYYTLNGKKV 254 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~--~--~~l~-~-~r~~~~~~~~~~~LSgGq~ 254 (388)
.... +.+.++|++|++..++ .++.++...... ....... .... . ..+. + .+.....+..+..|||||+
T Consensus 71 -~~~~-~~~~i~~~~q~~~~~~-~tv~e~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~ 145 (238)
T cd03249 71 -NLRW-LRSQIGLVSQEPVLFD-GTIAENIRYGKP--DATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQK 145 (238)
T ss_pred -CHHH-HHhhEEEECCchhhhh-hhHHHHhhccCC--CCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHH
Confidence 1112 2346999999876654 344333221110 0000000 0000 0 0000 0 0111223456789999999
Q ss_pred cHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 255 HFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 255 qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
||+.+|++|+. +|+++|||||+++| +.+.+.+.+++ ++. +++++||+++.+. .||++...
T Consensus 146 qrv~la~al~~------~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~-~vi~~sh~~~~~~-~~d~v~~l 210 (238)
T cd03249 146 QRIAIARALLR------NPKILLLDEATSALDAESEKLVQEALDRAM-KGR-TTIVIAHRLSTIR-NADLIAVL 210 (238)
T ss_pred HHHHHHHHHhc------CCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCC-EEEEEeCCHHHHh-hCCEEEEE
Confidence 99999999999 99999999999999 67777887775 444 5999999999987 78876433
No 255
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.5e-26 Score=218.00 Aligned_cols=199 Identities=15% Similarity=0.204 Sum_probs=134.0
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.++. ++|+++.++. |+||+|.+ |++++|+||||||||||+++|
T Consensus 4 l~~~~v~----~~~~~~~~l~--------~~s~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l 49 (250)
T PRK14266 4 IEVENLN----TYFDDAHILK--------NVNLDIPK----------------------NSVTALIGPSGCGKSTFIRTL 49 (250)
T ss_pred EEEEeEE----EEeCCeEEEe--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 3445555 6788766654 99999999 999999999999999999999
Q ss_pred hhcccEEEc--C--CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccC
Q psy14062 155 LFRFNAIIG--P--NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIP 229 (388)
Q Consensus 155 ~~~~ngIiG--p--ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~ 229 (388)
+ |+++ | +.+|++.++|..+.......... ++.++|++|++..++. +..++........+..... .....
T Consensus 50 ~----Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~-~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~ 123 (250)
T PRK14266 50 N----RMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL-RKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERV 123 (250)
T ss_pred H----hhhccCCCCCCccEEEECCEEcccccccHHHH-hhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHH
Confidence 9 9875 3 36899888775442110111122 3469999999877664 4433322111111110000 00000
Q ss_pred CceEEEEEE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhh
Q psy14062 230 GTDLEIART----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKL 300 (388)
Q Consensus 230 ~~~l~~~r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~ 300 (388)
...+...++ ....+.++..||+||+||++||++|+. +|+++|+|||+++| ..+...+.++++ +.
T Consensus 124 ~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~------~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~ 196 (250)
T PRK14266 124 EESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAV------SPEVILMDEPCSALDPISTTKIEDLIHKLKE-DY 196 (250)
T ss_pred HHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHc------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CC
Confidence 000111111 112356788999999999999999999 99999999999999 667777777754 33
Q ss_pred hHHHHHHHhHHHHHHHHHHHH
Q psy14062 301 TRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 301 ~~ii~vtH~l~~l~~~~d~~~ 321 (388)
+++++||+++.+...++++.
T Consensus 197 -tiii~sh~~~~~~~~~~~i~ 216 (250)
T PRK14266 197 -TIVIVTHNMQQATRVSKYTS 216 (250)
T ss_pred -eEEEEECCHHHHHhhcCEEE
Confidence 69999999999999888753
No 256
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=9.4e-27 Score=216.50 Aligned_cols=192 Identities=13% Similarity=0.139 Sum_probs=129.5
Q ss_pred EEEEEEEeeceEEecC-ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 75 LIITKIVAFNFKSYAG-YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 75 l~i~~l~~~~fksy~~-~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
+.+.+++ ++|++ +.++ +|+||++.+ |++++|+|||||||||||++
T Consensus 3 l~~~~l~----~~~~~~~~~l--------~~isl~i~~----------------------G~~~~i~G~nGsGKSTLl~~ 48 (229)
T cd03254 3 IEFENVN----FSYDEKKPVL--------KDINFSIKP----------------------GETVAIVGPTGAGKTTLINL 48 (229)
T ss_pred EEEEEEE----EecCCCCccc--------cceEEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 4566666 67864 3454 499999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccc----ccC
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYE----IIP 229 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~----~~~ 229 (388)
|+ |++ ++.+|++.+.+..+.-. .... .++.++|++|++..++. +..++...+.. ........ ...
T Consensus 49 l~----G~~-~~~~G~i~~~g~~~~~~--~~~~-~~~~i~~~~q~~~~~~~-tv~~~~~~~~~--~~~~~~~~~~~~~~~ 117 (229)
T cd03254 49 LM----RFY-DPQKGQILIDGIDIRDI--SRKS-LRSMIGVVLQDTFLFSG-TIMENIRLGRP--NATDEEVIEAAKEAG 117 (229)
T ss_pred Hh----cCc-CCCCCEEEECCEeHHHc--CHHH-HhhhEEEecCCchhhhh-HHHHHHhccCC--CCCHHHHHHHHHHhC
Confidence 99 998 77899988877544311 1112 23459999999776553 44332222110 00000000 000
Q ss_pred C-ceEEEE--EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhh
Q psy14062 230 G-TDLEIA--RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLT 301 (388)
Q Consensus 230 ~-~~l~~~--r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~ 301 (388)
- ..+... +.....+..+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.++. ++.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~------~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~- 189 (229)
T cd03254 118 AHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR------DPKILILDEATSNIDTETEKLIQEALEKLM-KGR- 189 (229)
T ss_pred hHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc------CCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCC-
Confidence 0 000000 11112244578999999999999999999 99999999999999 66777777764 344
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q psy14062 302 RVQLVETDLKALEPELRKA 320 (388)
Q Consensus 302 ~ii~vtH~l~~l~~~~d~~ 320 (388)
+++++||+++.+.. ++++
T Consensus 190 tii~~sh~~~~~~~-~d~i 207 (229)
T cd03254 190 TSIIIAHRLSTIKN-ADKI 207 (229)
T ss_pred EEEEEecCHHHHhh-CCEE
Confidence 59999999998864 7765
No 257
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.4e-25 Score=232.56 Aligned_cols=178 Identities=18% Similarity=0.185 Sum_probs=125.1
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+.+.+.+++ ++|+++.+|. |+||+|.+ |++++|+|||||||||||+
T Consensus 311 ~~l~~~~l~----~~y~~~~il~--------~isl~i~~----------------------Ge~~~l~G~NGsGKSTLlk 356 (638)
T PRK10636 311 PLLKMEKVS----AGYGDRIILD--------SIKLNLVP----------------------GSRIGLLGRNGAGKSTLIK 356 (638)
T ss_pred ceEEEEeeE----EEeCCeeeec--------cceEEECC----------------------CCEEEEECCCCCCHHHHHH
Confidence 456777777 7898877765 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccC--CCCCcceEEEEEEeccccCCCCccccccCC
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD--QVGGVSRCSVAIHFAQIIDKPNEEYEIIPG 230 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~--~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~ 230 (388)
+|+ |++ ++.+|++.+.+. ..++|++|... ..+..+..+. +... . .......+ .
T Consensus 357 ~l~----G~~-~p~~G~i~~~~~--------------~~igy~~Q~~~~~l~~~~~~~~~---~~~~-~-~~~~~~~~-~ 411 (638)
T PRK10636 357 LLA----GEL-APVSGEIGLAKG--------------IKLGYFAQHQLEFLRADESPLQH---LARL-A-PQELEQKL-R 411 (638)
T ss_pred HHh----CCC-CCCCCeEEECCC--------------EEEEEecCcchhhCCccchHHHH---HHHh-C-chhhHHHH-H
Confidence 999 998 788999765321 24899998632 1111111110 0000 0 00000000 0
Q ss_pred ceEEEEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHH
Q psy14062 231 TDLEIARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQ 304 (388)
Q Consensus 231 ~~l~~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii 304 (388)
..+..+... ...+.++..|||||+||+.||++|+. +|++|||||||++| +.+...|.++ .. +|+
T Consensus 412 ~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~------~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~g-tvi 481 (638)
T PRK10636 412 DYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQ------RPNLLLLDEPTNHLDLDMRQALTEALIDF---EG-ALV 481 (638)
T ss_pred HHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhc------CCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-eEE
Confidence 122222221 13456889999999999999999999 99999999999999 5566666555 23 599
Q ss_pred HHHHhHHHHHHHHHH
Q psy14062 305 LVETDLKALEPELRK 319 (388)
Q Consensus 305 ~vtH~l~~l~~~~d~ 319 (388)
+||||+..+.+.|++
T Consensus 482 ~vSHd~~~~~~~~d~ 496 (638)
T PRK10636 482 VVSHDRHLLRSTTDD 496 (638)
T ss_pred EEeCCHHHHHHhCCE
Confidence 999999999988765
No 258
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.91 E-value=1.2e-26 Score=215.63 Aligned_cols=179 Identities=15% Similarity=0.090 Sum_probs=127.3
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcC---CCCCcceeehhhhh
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGP---NGSGKSNVIDSMLF 178 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGp---ngSGKs~i~da~i~ 178 (388)
|+|+||+|.+ |++++|+||||||||||+++|+ |++ + +.+|++.++|..+.
T Consensus 23 l~~vsl~i~~----------------------Ge~~~l~G~nGsGKSTLlk~l~----G~~-~~~~~~~G~i~~~g~~~~ 75 (226)
T cd03234 23 LNDVSLHVES----------------------GQVMAILGSSGSGKTTLLDAIS----GRV-EGGGTTSGQILFNGQPRK 75 (226)
T ss_pred ccCceEEEcC----------------------CeEEEEECCCCCCHHHHHHHHh----Ccc-CCCCCCceEEEECCEECC
Confidence 4599999999 9999999999999999999999 998 6 67999887765331
Q ss_pred hcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCC--Ccccc-ccCCc-eEEEEEEeeeCCCCeeeeCCccc
Q psy14062 179 VFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKP--NEEYE-IIPGT-DLEIARTAFYDNSSYYTLNGKKV 254 (388)
Q Consensus 179 vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~--~~~~~-~~~~~-~l~~~r~~~~~~~~~~~LSgGq~ 254 (388)
. ..+++.+++++|++..++..+..++..+........ ..... ..... .+.........+..+..|||||+
T Consensus 76 -----~-~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 149 (226)
T cd03234 76 -----P-DQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGER 149 (226)
T ss_pred -----h-HHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHH
Confidence 1 123356999999988777666554332111111000 00000 00001 12222222334567889999999
Q ss_pred cHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhH-HHHHHHHHHH
Q psy14062 255 HFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDL-KALEPELRKA 320 (388)
Q Consensus 255 qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l-~~l~~~~d~~ 320 (388)
||+.+|++|+. +|+++|+|||+++| ..+...+.++.+++. +++++||++ +.+.+.+|++
T Consensus 150 qrl~laral~~------~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~-tiii~sh~~~~~~~~~~d~i 214 (226)
T cd03234 150 RRVSIAVQLLW------DPKVLILDEPTSGLDSFTALNLVSTLSQLARRNR-IVILTIHQPRSDLFRLFDRI 214 (226)
T ss_pred HHHHHHHHHHh------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCC-EEEEEecCCCHHHHHhCCEE
Confidence 99999999999 99999999999999 667778877765544 599999998 6888888765
No 259
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=7e-26 Score=210.72 Aligned_cols=170 Identities=15% Similarity=0.151 Sum_probs=126.9
Q ss_pred cEEEEEEEeeceEEecCceeecCC-CCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPF-NTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f-~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
.+.+.++. |.|.-...+..- ...||+||||+|.+ |++.+|||.|||||||+-|
T Consensus 4 ll~v~~l~----k~f~~~~~~~~~~~v~avd~Vsf~i~~----------------------ge~~glVGESG~GKSTlgr 57 (268)
T COG4608 4 LLEVKNLK----KYFPVGKGFGKKRYVKAVDGVSFSIKE----------------------GETLGLVGESGCGKSTLGR 57 (268)
T ss_pred eEEEeccE----EEEecccccCcccceEEecceeEEEcC----------------------CCEEEEEecCCCCHHHHHH
Confidence 45666666 667432211100 13578899999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCce
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~ 232 (388)
+|. +++ ++.+|++.+.|..+..+.. ..+.+++.. .
T Consensus 58 ~i~----~L~-~pt~G~i~f~g~~i~~~~~---~~~~~~v~e-------------------------------------l 92 (268)
T COG4608 58 LIL----GLE-EPTSGEILFEGKDITKLSK---EERRERVLE-------------------------------------L 92 (268)
T ss_pred HHH----cCc-CCCCceEEEcCcchhhcch---hHHHHHHHH-------------------------------------H
Confidence 999 999 7789998877765432220 000000100 0
Q ss_pred EEEEEE-eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHH
Q psy14062 233 LEIART-AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLV 306 (388)
Q Consensus 233 l~~~r~-~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~v 306 (388)
+...++ .....+.++.|||||+||+.|||||+. +|+++|+|||+|+| .+|..++.+++++...+.+++
T Consensus 93 L~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal------~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFI 166 (268)
T COG4608 93 LEKVGLPEEFLYRYPHELSGGQRQRIGIARALAL------NPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFI 166 (268)
T ss_pred HHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhh------CCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEE
Confidence 000011 123457889999999999999999999 99999999999999 889999999998866679999
Q ss_pred HHhHHHHHHHHHHH
Q psy14062 307 ETDLKALEPELRKA 320 (388)
Q Consensus 307 tH~l~~l~~~~d~~ 320 (388)
+||+..+...+|++
T Consensus 167 sHDL~vv~~isdri 180 (268)
T COG4608 167 SHDLSVVRYISDRI 180 (268)
T ss_pred EEEHHhhhhhcccE
Confidence 99999999999975
No 260
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.91 E-value=9.5e-27 Score=219.44 Aligned_cols=189 Identities=17% Similarity=0.179 Sum_probs=127.9
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|+||||+|.+ |++++|+||||||||||+++|+ |+. |+ +|.+.++|..+. .
T Consensus 12 l~~vsl~i~~----------------------Gei~~l~G~nGsGKSTLl~~l~----Gl~-~~-~G~i~~~g~~i~--~ 61 (248)
T PRK03695 12 LGPLSAEVRA----------------------GEILHLVGPNGAGKSTLLARMA----GLL-PG-SGSIQFAGQPLE--A 61 (248)
T ss_pred ecceEEEEcC----------------------CCEEEEECCCCCCHHHHHHHHc----CCC-CC-CeEEEECCEecC--c
Confidence 4599999999 9999999999999999999999 988 65 899888775442 1
Q ss_pred ccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHH
Q psy14062 182 YRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAK 261 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~ 261 (388)
...... .+.++|++|.+..++..+..++...+.............. ...+...++....+..+..|||||+||+.||+
T Consensus 62 ~~~~~~-~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~ 139 (248)
T PRK03695 62 WSAAEL-ARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASAL-NEVAEALGLDDKLGRSVNQLSGGEWQRVRLAA 139 (248)
T ss_pred CCHHHH-hhheEEecccCccCCCccHHHHHHhcCccCCCcHHHHHHH-HHHHHHcCCHhHhcCCcccCCHHHHHHHHHHH
Confidence 111222 3458999998766655554433221111000000000000 11222223333346778999999999999999
Q ss_pred HHHHcCCCCC-CCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 262 VLRDHGVDLL-NNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 262 aL~~~Gi~~~-~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+|+....... +|+++|||||+++| ..+...+.++++++. +++++||+++.+.+.||++...
T Consensus 140 al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~-tvi~~sH~~~~~~~~~d~i~~l 206 (248)
T PRK03695 140 VVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGI-AVVMSSHDLNHTLRHADRVWLL 206 (248)
T ss_pred HHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCC-EEEEEecCHHHHHHhCCEEEEE
Confidence 9984100000 35999999999999 667778877765554 5999999999999999976433
No 261
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.91 E-value=2e-26 Score=263.45 Aligned_cols=199 Identities=17% Similarity=0.202 Sum_probs=148.7
Q ss_pred CcEEEEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 73 PRLIITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
.++.+++++ |+|++ +.+ |+||||.|.+ |++++|+||||||||||
T Consensus 1936 ~~L~v~nLs----K~Y~~~~~~a--------L~~ISf~I~~----------------------GEi~gLLG~NGAGKTTL 1981 (2272)
T TIGR01257 1936 DILRLNELT----KVYSGTSSPA--------VDRLCVGVRP----------------------GECFGLLGVNGAGKTTT 1981 (2272)
T ss_pred ceEEEEEEE----EEECCCCceE--------EEeeEEEEcC----------------------CcEEEEECCCCCcHHHH
Confidence 457777887 88985 345 4599999999 99999999999999999
Q ss_pred HhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCC
Q psy14062 151 IDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPG 230 (388)
Q Consensus 151 l~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~ 230 (388)
+++|+ |++ ++.+|++.+.|..+. ...... ++.+|+++|.+..++.+++.+....+..+.+...........
T Consensus 1982 lkmL~----Gll-~ptsG~I~i~G~~i~---~~~~~~-r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~ 2052 (2272)
T TIGR01257 1982 FKMLT----GDT-TVTSGDATVAGKSIL---TNISDV-HQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVAN 2052 (2272)
T ss_pred HHHHh----CCC-CCCccEEEECCEECc---chHHHH-hhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999 999 778999888775542 111222 346999999988887777766543333332222111110001
Q ss_pred ceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 231 TDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 231 ~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
..+...++....++.+..|||||+||+.+|+||+. +|+++|||||+++| ..+.+.+.++++++. +|++
T Consensus 2053 ~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~------~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~-TIIL 2125 (2272)
T TIGR01257 2053 WSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIG------CPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGR-AVVL 2125 (2272)
T ss_pred HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhc------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC-EEEE
Confidence 12222334344578889999999999999999999 99999999999999 778888888876655 5999
Q ss_pred HHHhHHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKAV 321 (388)
Q Consensus 306 vtH~l~~l~~~~d~~~ 321 (388)
+||++++++..||++.
T Consensus 2126 tTH~mee~e~lcDrV~ 2141 (2272)
T TIGR01257 2126 TSHSMEECEALCTRLA 2141 (2272)
T ss_pred EeCCHHHHHHhCCEEE
Confidence 9999999999988763
No 262
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.7e-26 Score=238.64 Aligned_cols=185 Identities=13% Similarity=0.109 Sum_probs=132.8
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
++|+||+|.+ |++++|+||||||||||+++|+ |+. ++.+|++.+.+..+.. .
T Consensus 269 l~~isl~i~~----------------------Ge~~~iiG~NGsGKSTLlk~l~----G~~-~p~~G~i~~~g~~~~~-~ 320 (501)
T PRK11288 269 REPISFSVRA----------------------GEIVGLFGLVGAGRSELMKLLY----GAT-RRTAGQVYLDGKPIDI-R 320 (501)
T ss_pred ccceeEEEeC----------------------CcEEEEEcCCCCCHHHHHHHHc----CCC-cCCCceEEECCEECCC-C
Confidence 4599999999 9999999999999999999999 998 7789998877654321 1
Q ss_pred ccchhhhhccceeEecccC---CCCCcceEEEEEE-ecccc---C---CCCccccccCCceEEEEEEe-eeCCCCeeeeC
Q psy14062 182 YRASKIRANKLSVLMHKSD---QVGGVSRCSVAIH-FAQII---D---KPNEEYEIIPGTDLEIARTA-FYDNSSYYTLN 250 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~---~~~~~~~~eV~~~-~~~~~---~---~~~~~~~~~~~~~l~~~r~~-~~~~~~~~~LS 250 (388)
.........+++++|++. .++..+..+.... ..... + ......... ...+...++. ...++++..||
T Consensus 321 -~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LS 398 (501)
T PRK11288 321 -SPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENA-DRFIRSLNIKTPSREQLIMNLS 398 (501)
T ss_pred -CHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHH-HHHHHhcCcccCCccCccccCC
Confidence 111223456999999863 5666665543221 10000 0 000000011 1122223331 23577899999
Q ss_pred CccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 251 GKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 251 gGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
|||+||+.||++|+. +|++|||||||++| +++...+.++++++.+ |+++|||++.+.+.||++..+
T Consensus 399 gGq~qrl~la~al~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~t-viivsHd~~~~~~~~d~i~~l 469 (501)
T PRK11288 399 GGNQQKAILGRWLSE------DMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVA-VLFVSSDLPEVLGVADRIVVM 469 (501)
T ss_pred HHHHHHHHHHHHHcc------CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCE-EEEECCCHHHHHhhCCEEEEE
Confidence 999999999999999 99999999999999 7788888888777654 999999999999999987544
No 263
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.91 E-value=4.1e-27 Score=218.62 Aligned_cols=185 Identities=17% Similarity=0.130 Sum_probs=124.1
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ +.|+++.++. |+||+|.+ |++++|+||||||||||+++|
T Consensus 23 l~~~~~~----~~~~~~~il~--------~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l 68 (224)
T cd03220 23 LGILGRK----GEVGEFWALK--------DVSFEVPR----------------------GERIGLIGRNGAGKSTLLRLL 68 (224)
T ss_pred hhhhhhh----hhcCCeEEEe--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 3344454 6799888765 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEE
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLE 234 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~ 234 (388)
+ |++ ++.+|++.+.+..+.... .... ..+..++.++........+.............+.
T Consensus 69 ~----G~~-~p~~G~i~~~g~~~~~~~--------~~~~-------~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~ 128 (224)
T cd03220 69 A----GIY-PPDSGTVTVRGRVSSLLG--------LGGG-------FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIE 128 (224)
T ss_pred h----CCC-CCCceEEEECCEEchhhc--------cccc-------CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9 998 788999877664332110 0011 1122232222111101011000000000001112
Q ss_pred EEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHh
Q psy14062 235 IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETD 309 (388)
Q Consensus 235 ~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~ 309 (388)
..++....+..+..|||||+||+.+|++|+. +|+++|||||+++| ..+.+.+.++++++. +++++||+
T Consensus 129 ~~~l~~~~~~~~~~LSgG~~qrv~laral~~------~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~-tiii~sH~ 201 (224)
T cd03220 129 FSELGDFIDLPVKTYSSGMKARLAFAIATAL------EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGK-TVILVSHD 201 (224)
T ss_pred HcCChhhhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 2223333456788999999999999999999 99999999999999 567778877766544 59999999
Q ss_pred HHHHHHHHHHH
Q psy14062 310 LKALEPELRKA 320 (388)
Q Consensus 310 l~~l~~~~d~~ 320 (388)
++.+...+|++
T Consensus 202 ~~~~~~~~d~i 212 (224)
T cd03220 202 PSSIKRLCDRA 212 (224)
T ss_pred HHHHHHhCCEE
Confidence 99999888764
No 264
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.1e-26 Score=224.21 Aligned_cols=203 Identities=14% Similarity=0.161 Sum_probs=136.1
Q ss_pred CcEEEEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 73 PRLIITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
..+.+.+++ ++|.+ ..+ |+||||+|.+ |++++|+||||||||||
T Consensus 79 ~~i~~~nls----~~y~~~~~~~--------L~~is~~I~~----------------------Ge~v~IvG~~GsGKSTL 124 (329)
T PRK14257 79 NVFEIRNFN----FWYMNRTKHV--------LHDLNLDIKR----------------------NKVTAFIGPSGCGKSTF 124 (329)
T ss_pred ceEEEEeeE----EEecCCCcee--------eeeeEEEEcC----------------------CCEEEEECCCCCCHHHH
Confidence 466677777 67853 334 4599999999 99999999999999999
Q ss_pred HhhhhhcccEEEcC----CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-
Q psy14062 151 IDSMLFRFNAIIGP----NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY- 225 (388)
Q Consensus 151 l~~i~~~~ngIiGp----ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~- 225 (388)
+++|+ |+..+ +.+|.+.++|..+.-.......+| +.++++||.+..+. .+..++..+........+...
T Consensus 125 l~~L~----g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr-~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~ 198 (329)
T PRK14257 125 LRNLN----QLNDLIEGTSHEGEIYFLGTNTRSKKISSLELR-TRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKIL 198 (329)
T ss_pred HHHHh----ccccccCCCCCceEEEECCEEccccccchHhhh-ccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHH
Confidence 99999 87732 468998888765531111112233 46999999988764 343332221111111111100
Q ss_pred cccCCceEEEEE----EeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHH
Q psy14062 226 EIIPGTDLEIAR----TAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEER 296 (388)
Q Consensus 226 ~~~~~~~l~~~r----~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~ 296 (388)
.......+.... +....+.....|||||+||++|||+|.. +|++||||||+++| ..+...+.++.
T Consensus 199 ~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~------~p~IlLLDEPts~LD~~~~~~i~~~i~~l~ 272 (329)
T PRK14257 199 EKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIAL------EPEVLLMDEPTSALDPIATAKIEELILELK 272 (329)
T ss_pred HHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHh------CCCEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 000000011001 1112356788999999999999999999 99999999999999 55666777665
Q ss_pred HHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 297 TEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 297 ~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+ +. +++++||+++.+.+.+|++.-+
T Consensus 273 ~-~~-Tii~iTH~l~~i~~~~Driivl 297 (329)
T PRK14257 273 K-KY-SIIIVTHSMAQAQRISDETVFF 297 (329)
T ss_pred c-CC-EEEEEeCCHHHHHHhCCEEEEE
Confidence 5 33 6999999999999988876443
No 265
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=2.6e-26 Score=209.98 Aligned_cols=179 Identities=18% Similarity=0.222 Sum_probs=121.4
Q ss_pred EEEEEEeeceEEecCc-----eeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 76 IITKIVAFNFKSYAGY-----VTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 76 ~i~~l~~~~fksy~~~-----~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
.+.+++ ++|++. .++ +++||+|++ |++++|+||||||||||
T Consensus 2 ~~~~l~----~~~~~~~~~~~~il--------~~~s~~i~~----------------------G~~~~i~G~nG~GKSTL 47 (204)
T cd03250 2 SVEDAS----FTWDSGEQETSFTL--------KDINLEVPK----------------------GELVAIVGPVGSGKSSL 47 (204)
T ss_pred EEeEEE----EecCCCCcccccee--------eeeeEEECC----------------------CCEEEEECCCCCCHHHH
Confidence 345565 678754 354 499999999 99999999999999999
Q ss_pred HhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccccc--
Q psy14062 151 IDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEII-- 228 (388)
Q Consensus 151 l~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~-- 228 (388)
+++|+ |+. ++.+|++.++| .++|++|++..++ .+..++..+.... . ........
T Consensus 48 l~~i~----G~~-~~~~G~i~~~g----------------~i~~~~q~~~l~~-~t~~enl~~~~~~-~-~~~~~~~~~~ 103 (204)
T cd03250 48 LSALL----GEL-EKLSGSVSVPG----------------SIAYVSQEPWIQN-GTIRENILFGKPF-D-EERYEKVIKA 103 (204)
T ss_pred HHHHh----CcC-CCCCCeEEEcC----------------EEEEEecCchhcc-CcHHHHhccCCCc-C-HHHHHHHHHH
Confidence 99999 998 77899977654 4899999987664 3444333322111 0 00000000
Q ss_pred -C-CceEEEE--EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHh-hhHHHHHH
Q psy14062 229 -P-GTDLEIA--RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYG-KYDEERTE 298 (388)
Q Consensus 229 -~-~~~l~~~--r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~-~l~el~~e 298 (388)
. ...+... +.....+.....||+||+||+.||++|+. +|+++|+|||+++| +.+.. ++....+.
T Consensus 104 ~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~------~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~ 177 (204)
T cd03250 104 CALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYS------DADIYLLDDPLSAVDAHVGRHIFENCILGLLLN 177 (204)
T ss_pred cCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhc------CCCEEEEeCccccCCHHHHHHHHHHHHHHhccC
Confidence 0 0000000 01111234577899999999999999999 99999999999999 34444 33444344
Q ss_pred hhhHHHHHHHhHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
+. +++++||++..+.. ++++
T Consensus 178 ~~-tvi~~sh~~~~~~~-~d~i 197 (204)
T cd03250 178 NK-TRILVTHQLQLLPH-ADQI 197 (204)
T ss_pred CC-EEEEEeCCHHHHhh-CCEE
Confidence 33 59999999988876 6654
No 266
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.91 E-value=1.9e-25 Score=199.78 Aligned_cols=130 Identities=20% Similarity=0.228 Sum_probs=106.3
Q ss_pred EEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC
Q psy14062 86 KSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN 165 (388)
Q Consensus 86 ksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn 165 (388)
|+|++..++. + +|++++ |++++|+||||||||||+++|+ |++ ++
T Consensus 8 ~~~~~~~~l~--------~-~~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~l~----Gl~-~p 51 (177)
T cd03222 8 KRYGVFFLLV--------E-LGVVKE----------------------GEVIGIVGPNGTGKTTAVKILA----GQL-IP 51 (177)
T ss_pred EEECCEEEEc--------c-CcEECC----------------------CCEEEEECCCCChHHHHHHHHH----cCC-CC
Confidence 7898877764 6 489999 9999999999999999999999 998 77
Q ss_pred CCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCC
Q psy14062 166 GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSS 245 (388)
Q Consensus 166 gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~ 245 (388)
.+|++.+.+. .+++++|...
T Consensus 52 ~~G~i~~~g~---------------~i~~~~q~~~--------------------------------------------- 71 (177)
T cd03222 52 NGDNDEWDGI---------------TPVYKPQYID--------------------------------------------- 71 (177)
T ss_pred CCcEEEECCE---------------EEEEEcccCC---------------------------------------------
Confidence 8999765431 2444433210
Q ss_pred eeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 246 YYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 246 ~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
|||||+||+.+|++|+. +|+++|+|||+++| +.+...+.++.+++..+++++||+++.+...++++
T Consensus 72 ---LSgGq~qrv~laral~~------~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i 142 (177)
T cd03222 72 ---LSGGELQRVAIAAALLR------NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRI 142 (177)
T ss_pred ---CCHHHHHHHHHHHHHhc------CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEE
Confidence 99999999999999999 99999999999999 56666777766554235999999999999888876
No 267
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.2e-25 Score=203.62 Aligned_cols=197 Identities=19% Similarity=0.274 Sum_probs=136.0
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.+++ .+|+++.+|+ |||++|.+ |+-++|+|||||||||||++
T Consensus 31 li~l~~v~----v~r~gk~iL~--------~isW~V~~----------------------ge~W~I~G~NGsGKTTLL~l 76 (257)
T COG1119 31 LIELKNVS----VRRNGKKILG--------DLSWQVNP----------------------GEHWAIVGPNGAGKTTLLSL 76 (257)
T ss_pred eEEecceE----EEECCEeecc--------ccceeecC----------------------CCcEEEECCCCCCHHHHHHH
Confidence 34455555 5699999977 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccC--CCCCcceEEEEEE--ecc--ccC--CCCccc
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD--QVGGVSRCSVAIH--FAQ--IID--KPNEEY 225 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~--~~~~~~~~eV~~~--~~~--~~~--~~~~~~ 225 (388)
++ |-. |+++|...++|... -.+.....+| ++||++...-. ..+..++.++.+. |.. ++. ......
T Consensus 77 l~----~~~-~pssg~~~~~G~~~-G~~~~~~elr-k~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~ 149 (257)
T COG1119 77 LT----GEH-PPSSGDVTLLGRRF-GKGETIFELR-KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDL 149 (257)
T ss_pred Hh----ccc-CCCCCceeeeeeec-cCCcchHHHH-HHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHH
Confidence 99 988 88899988877642 1121113455 55998864321 2233444555432 211 111 011111
Q ss_pred cccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH-h
Q psy14062 226 EIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE-K 299 (388)
Q Consensus 226 ~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e-~ 299 (388)
.. ....++........+++..+||-||+||+-|||||.. +|++||||||+++| +.+.+.+.++... +
T Consensus 150 ~~-a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~------~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~ 222 (257)
T COG1119 150 AA-AQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVK------DPELLILDEPAQGLDLIAREQLLNRLEELAASPG 222 (257)
T ss_pred HH-HHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhc------CCCEEEecCccccCChHHHHHHHHHHHHHhcCCC
Confidence 11 1123344455556788999999999999999999999 99999999999999 5667777776643 3
Q ss_pred hhHHHHHHHhHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELR 318 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d 318 (388)
..++++|||..+++-...+
T Consensus 223 ~~~ll~VtHh~eEi~~~~t 241 (257)
T COG1119 223 APALLFVTHHAEEIPPCFT 241 (257)
T ss_pred CceEEEEEcchhhcccccc
Confidence 3458999999877654433
No 268
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.91 E-value=2.4e-25 Score=197.38 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=110.5
Q ss_pred EEEEEeeceEEecC-ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 77 ITKIVAFNFKSYAG-YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 77 i~~l~~~~fksy~~-~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+.++. ++|++ +.++ +++||+|.+ |++++|+||||||||||+++|+
T Consensus 3 ~~~~~----~~~~~~~~~l--------~~i~l~i~~----------------------Ge~~~i~G~nGsGKSTLl~~l~ 48 (166)
T cd03223 3 LENLS----LATPDGRVLL--------KDLSFEIKP----------------------GDRLLITGPSGTGKSSLFRALA 48 (166)
T ss_pred EEEEE----EEcCCCCeee--------ecCeEEECC----------------------CCEEEEECCCCCCHHHHHHHHh
Confidence 44555 56853 4554 499999999 9999999999999999999999
Q ss_pred hcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEE
Q psy14062 156 FRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEI 235 (388)
Q Consensus 156 ~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~ 235 (388)
|++ ++.+|++.+.+. +.++|++|++..+ ..+..++. ..
T Consensus 49 ----G~~-~~~~G~i~~~~~--------------~~i~~~~q~~~~~-~~tv~~nl----------------------~~ 86 (166)
T cd03223 49 ----GLW-PWGSGRIGMPEG--------------EDLLFLPQRPYLP-LGTLREQL----------------------IY 86 (166)
T ss_pred ----cCC-CCCCceEEECCC--------------ceEEEECCCCccc-cccHHHHh----------------------hc
Confidence 998 777999765421 4589999976432 11111110 00
Q ss_pred EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhH
Q psy14062 236 ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDL 310 (388)
Q Consensus 236 ~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l 310 (388)
. ....|||||+||+.+|++|+. +|+++|+|||+++| +.+.+.+.++ + .+++++||++
T Consensus 87 ~--------~~~~LS~G~~~rv~laral~~------~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~-~tiiivsh~~ 148 (166)
T cd03223 87 P--------WDDVLSGGEQQRLAFARLLLH------KPKFVFLDEATSALDEESEDRLYQLLKEL---G-ITVISVGHRP 148 (166)
T ss_pred c--------CCCCCCHHHHHHHHHHHHHHc------CCCEEEEECCccccCHHHHHHHHHHHHHh---C-CEEEEEeCCh
Confidence 0 357899999999999999999 99999999999999 4444555443 3 3599999998
Q ss_pred HHHHHHHHHH
Q psy14062 311 KALEPELRKA 320 (388)
Q Consensus 311 ~~l~~~~d~~ 320 (388)
..+ ..+|++
T Consensus 149 ~~~-~~~d~i 157 (166)
T cd03223 149 SLW-KFHDRV 157 (166)
T ss_pred hHH-hhCCEE
Confidence 754 466654
No 269
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.91 E-value=2.5e-26 Score=237.33 Aligned_cols=185 Identities=15% Similarity=0.177 Sum_probs=132.2
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|+++||+|.+ |++++|+||||||||||+++|+ |++ ++.+|++.+.|..+...
T Consensus 268 l~~vsl~i~~----------------------Ge~~~liG~NGsGKSTLl~~l~----G~~-~p~~G~I~~~g~~i~~~- 319 (501)
T PRK10762 268 VNDVSFTLRK----------------------GEILGVSGLMGAGRTELMKVLY----GAL-PRTSGYVTLDGHEVVTR- 319 (501)
T ss_pred cccceEEEcC----------------------CcEEEEecCCCCCHHHHHHHHh----CCC-CCCceEEEECCEECCCC-
Confidence 4499999999 9999999999999999999999 998 77799988877544211
Q ss_pred ccchhhhhccceeEeccc---CCCCCcceEEEEEEe-c-ccc---C-CCCcc-ccccCCceEEEEEEe-eeCCCCeeeeC
Q psy14062 182 YRASKIRANKLSVLMHKS---DQVGGVSRCSVAIHF-A-QII---D-KPNEE-YEIIPGTDLEIARTA-FYDNSSYYTLN 250 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~---~~~~~~~~~eV~~~~-~-~~~---~-~~~~~-~~~~~~~~l~~~r~~-~~~~~~~~~LS 250 (388)
......++.++|++|++ ..++..++.++.... . ... + ..... .... ...+...++. ...++++..||
T Consensus 320 -~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LS 397 (501)
T PRK10762 320 -SPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAV-SDFIRLFNIKTPSMEQAIGLLS 397 (501)
T ss_pred -CHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHH-HHHHHhcCCCCCCccCchhhCC
Confidence 11122334699999986 355556655433211 0 000 0 00000 0001 1122222332 24577899999
Q ss_pred CccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 251 GKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 251 gGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
|||+||+.||++|+. +|++|||||||++| +.+...+.++.+++. +++++||+++.+.+.||++...
T Consensus 398 gGekqrv~lA~al~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~-tviivtHd~~~~~~~~d~v~~l 468 (501)
T PRK10762 398 GGNQQKVAIARGLMT------RPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGL-SIILVSSEMPEVLGMSDRILVM 468 (501)
T ss_pred HHHHHHHHHHHHHhh------CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCC-EEEEEcCCHHHHHhhCCEEEEE
Confidence 999999999999999 99999999999999 777788888876655 4999999999999999976544
No 270
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.91 E-value=3.2e-26 Score=236.97 Aligned_cols=185 Identities=15% Similarity=0.195 Sum_probs=130.9
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|++|||+|.+ |++++|+||||||||||+++|+ |+. ++.+|++.+.+..+..
T Consensus 279 l~~isl~i~~----------------------Ge~~~l~G~NGsGKSTLl~~i~----Gl~-~p~~G~i~~~g~~i~~-- 329 (510)
T PRK15439 279 FRNISLEVRA----------------------GEILGLAGVVGAGRTELAETLY----GLR-PARGGRIMLNGKEINA-- 329 (510)
T ss_pred ccceeEEEcC----------------------CcEEEEECCCCCCHHHHHHHHc----CCC-CCCCcEEEECCEECCC--
Confidence 3499999999 9999999999999999999999 998 7789998887754421
Q ss_pred ccchhhhhccceeEeccc---CCCCCcceEEEEEEe--c--cccCCCCccccccCCceEEEEEEe-eeCCCCeeeeCCcc
Q psy14062 182 YRASKIRANKLSVLMHKS---DQVGGVSRCSVAIHF--A--QIIDKPNEEYEIIPGTDLEIARTA-FYDNSSYYTLNGKK 253 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~---~~~~~~~~~eV~~~~--~--~~~~~~~~~~~~~~~~~l~~~r~~-~~~~~~~~~LSgGq 253 (388)
......++..++|++|.+ .+++..+..++...+ . ............+. ..+...++. ...++++..|||||
T Consensus 330 ~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~l~~~~~~~~~~~LSgG~ 408 (510)
T PRK15439 330 LSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLE-RYRRALNIKFNHAEQAARTLSGGN 408 (510)
T ss_pred CCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHH-HHHHHcCCCCCCccCccccCCcHH
Confidence 111222334699999974 345544443322111 0 00000000000011 122222332 24567889999999
Q ss_pred ccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 254 VHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 254 ~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+||+.||++|+. +|++|||||||++| +.+...+.++++++. +|+++|||++.+.+.||++..+
T Consensus 409 kqrl~la~al~~------~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~-tiIivsHd~~~i~~~~d~i~~l 476 (510)
T PRK15439 409 QQKVLIAKCLEA------SPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNV-AVLFISSDLEEIEQMADRVLVM 476 (510)
T ss_pred HHHHHHHHHHhh------CCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCC-EEEEECCCHHHHHHhCCEEEEE
Confidence 999999999999 99999999999999 777888888877655 5999999999999999987544
No 271
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=4.7e-26 Score=212.75 Aligned_cols=193 Identities=15% Similarity=0.166 Sum_probs=129.9
Q ss_pred EEEEEeeceEEec-CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 77 ITKIVAFNFKSYA-GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 77 i~~l~~~~fksy~-~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+.++. ++|+ ++.++ +|+||+|.+ |++++|+||||||||||+++|+
T Consensus 3 ~~~l~----~~~~~~~~~l--------~~i~~~i~~----------------------Ge~~~l~G~nGsGKSTLl~~i~ 48 (236)
T cd03253 3 FENVT----FAYDPGRPVL--------KDVSFTIPA----------------------GKKVAIVGPSGSGKSTILRLLF 48 (236)
T ss_pred EEEEE----EEeCCCCcee--------eeeEEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh
Confidence 44555 5685 34454 499999999 9999999999999999999999
Q ss_pred hcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccc-cC--C--
Q psy14062 156 FRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEI-IP--G-- 230 (388)
Q Consensus 156 ~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~-~~--~-- 230 (388)
|+. ++.+|++.++|..+.-. ..... ++.++|++|++..++ .+..++...... ......... .. .
T Consensus 49 ----Gl~-~~~~G~v~~~g~~~~~~--~~~~~-~~~i~~~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~l~ 117 (236)
T cd03253 49 ----RFY-DVSSGSILIDGQDIREV--TLDSL-RRAIGVVPQDTVLFN-DTIGYNIRYGRP--DATDEEVIEAAKAAQIH 117 (236)
T ss_pred ----ccc-CCCCCEEEECCEEhhhC--CHHHH-HhhEEEECCCChhhc-chHHHHHhhcCC--CCCHHHHHHHHHHcCcH
Confidence 998 78899988876544311 11122 346999999987664 344332221110 000000000 00 0
Q ss_pred ceEEEE--EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHH
Q psy14062 231 TDLEIA--RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRV 303 (388)
Q Consensus 231 ~~l~~~--r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~i 303 (388)
..+... +.....+..+..|||||+||+.||++|+. +|+++|||||+++| +.+...+.++++ +. ++
T Consensus 118 ~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~-ti 189 (236)
T cd03253 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK------NPPILLLDEATSALDTHTEREIQAALRDVSK-GR-TT 189 (236)
T ss_pred HHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CC-EE
Confidence 000000 11112244578999999999999999999 99999999999999 666777777665 44 59
Q ss_pred HHHHHhHHHHHHHHHHHHHH
Q psy14062 304 QLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 304 i~vtH~l~~l~~~~d~~~~y 323 (388)
+++||+++.+.. ||++...
T Consensus 190 ii~sh~~~~~~~-~d~~~~l 208 (236)
T cd03253 190 IVIAHRLSTIVN-ADKIIVL 208 (236)
T ss_pred EEEcCCHHHHHh-CCEEEEE
Confidence 999999999865 7776433
No 272
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.3e-25 Score=231.44 Aligned_cols=186 Identities=11% Similarity=0.135 Sum_probs=129.1
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|++|||+|.+ |++++|+||||||||||+++|+ |+. ++.+|++.+.+..+.-
T Consensus 264 l~~vsl~i~~----------------------Ge~~~l~G~nGsGKSTLl~~l~----Gl~-~p~~G~i~~~g~~i~~-- 314 (491)
T PRK10982 264 IRDVSFDLHK----------------------GEILGIAGLVGAKRTDIVETLF----GIR-EKSAGTITLHGKKINN-- 314 (491)
T ss_pred cceeeEEEeC----------------------CcEEEEecCCCCCHHHHHHHHc----CCC-cCCccEEEECCEECCC--
Confidence 4499999999 9999999999999999999999 998 6789998887654321
Q ss_pred ccchhhhhccceeEecccC---CCCCcceEEEEEE--e---ccccCC-CCccccccCCceEEEEEEe-eeCCCCeeeeCC
Q psy14062 182 YRASKIRANKLSVLMHKSD---QVGGVSRCSVAIH--F---AQIIDK-PNEEYEIIPGTDLEIARTA-FYDNSSYYTLNG 251 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~---~~~~~~~~eV~~~--~---~~~~~~-~~~~~~~~~~~~l~~~r~~-~~~~~~~~~LSg 251 (388)
........+.++|++|.+. .++..+..+..+. + ...++. ............+...+.. ...+++++.|||
T Consensus 315 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 394 (491)
T PRK10982 315 HNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSG 394 (491)
T ss_pred CCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCc
Confidence 1111222356899999753 3444443211110 0 000010 0000000000112222222 234778999999
Q ss_pred ccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 252 KKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 252 Gq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
||+||+.||++|+. +|++|||||||++| +.+...+.++.+++. +|+++||+++.+.+.||++..+
T Consensus 395 Gq~qrv~la~al~~------~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~-tvi~vsHd~~~~~~~~d~v~~l 464 (491)
T PRK10982 395 GNQQKVIIGRWLLT------QPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDK-GIIIISSEMPELLGITDRILVM 464 (491)
T ss_pred HHHHHHHHHHHHhc------CCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCC-EEEEECCChHHHHhhCCEEEEE
Confidence 99999999999999 99999999999999 778888888877665 4999999999999999987544
No 273
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.90 E-value=3.7e-26 Score=215.13 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=114.5
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIH 213 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~ 213 (388)
|++++|+||||||||||+++|+ |++ ++.+|++.+.+. .+++++|.+...+..++.++...
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~----G~~-~p~~G~i~~~g~---------------~i~~~~q~~~~~~~~tv~e~l~~ 84 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLA----GVL-KPDEGDIEIELD---------------TVSYKPQYIKADYEGTVRDLLSS 84 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHh----CCC-cCCCCeEEECCc---------------eEEEecccccCCCCCCHHHHHHH
Confidence 9999999999999999999999 998 777999765431 48888888665444444432211
Q ss_pred eccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHH
Q psy14062 214 FAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVL 288 (388)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i 288 (388)
+........... ...+....+....++.+..|||||+||+.||++|+. +|+++|||||+++| +.+
T Consensus 85 ~~~~~~~~~~~~----~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~------~p~llllDEPt~~LD~~~~~~l 154 (246)
T cd03237 85 ITKDFYTHPYFK----TEIAKPLQIEQILDREVPELSGGELQRVAIAACLSK------DADIYLLDEPSAYLDVEQRLMA 154 (246)
T ss_pred HhhhccccHHHH----HHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHH
Confidence 100000000000 011222222233457788999999999999999999 99999999999999 667
Q ss_pred HhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 289 YGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 289 ~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
...++++.++...+++++||+++.+...||++..+
T Consensus 155 ~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l 189 (246)
T cd03237 155 SKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVF 189 (246)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 77888877653345999999999999999876443
No 274
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.90 E-value=6e-26 Score=209.99 Aligned_cols=192 Identities=14% Similarity=0.133 Sum_probs=129.2
Q ss_pred EEEEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 75 LIITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 75 l~i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+.+.+++ ++|++ +.+ |+|+||+|.+ |++++|+||||||||||++
T Consensus 3 l~~~~l~----~~~~~~~~~~--------l~~i~~~i~~----------------------Ge~~~i~G~nGsGKSTLl~ 48 (221)
T cd03244 3 IEFKNVS----LRYRPNLPPV--------LKNISFSIKP----------------------GEKVGIVGRTGSGKSSLLL 48 (221)
T ss_pred EEEEEEE----EecCCCCccc--------ccceEEEECC----------------------CCEEEEECCCCCCHHHHHH
Confidence 4566666 67864 234 4599999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccc---cC
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEI---IP 229 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~---~~ 229 (388)
+|+ |+. ++.+|++.+.+..+.-. .... +++.+++++|++..++ .+..++...+... . ....... ..
T Consensus 49 ~l~----G~~-~~~~G~i~~~g~~~~~~--~~~~-~~~~i~~~~q~~~l~~-~tv~enl~~~~~~-~-~~~~~~~~~~~~ 117 (221)
T cd03244 49 ALF----RLV-ELSSGSILIDGVDISKI--GLHD-LRSRISIIPQDPVLFS-GTIRSNLDPFGEY-S-DEELWQALERVG 117 (221)
T ss_pred HHH----cCC-CCCCCEEEECCEEhHhC--CHHH-HhhhEEEECCCCcccc-chHHHHhCcCCCC-C-HHHHHHHHHHhC
Confidence 999 998 77899988877544321 1122 2356999999987654 3444332222110 0 0000000 00
Q ss_pred C-ceEE--EEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhh
Q psy14062 230 G-TDLE--IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLT 301 (388)
Q Consensus 230 ~-~~l~--~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~ 301 (388)
- ..+. ..+.....+..+..||+||+||+.+|++|+. +|+++|||||+++| +.+...+.++.. + .
T Consensus 118 l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~-~ 189 (221)
T cd03244 118 LKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLR------KSKILVLDEATASVDPETDALIQKTIREAFK-D-C 189 (221)
T ss_pred cHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhc------CCCEEEEeCccccCCHHHHHHHHHHHHHhcC-C-C
Confidence 0 0000 0011111245678999999999999999999 99999999999999 666677776654 3 3
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q psy14062 302 RVQLVETDLKALEPELRKA 320 (388)
Q Consensus 302 ~ii~vtH~l~~l~~~~d~~ 320 (388)
+++++||+++.+.. ++++
T Consensus 190 tii~~sh~~~~~~~-~d~i 207 (221)
T cd03244 190 TVLTIAHRLDTIID-SDRI 207 (221)
T ss_pred EEEEEeCCHHHHhh-CCEE
Confidence 59999999998864 6543
No 275
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.90 E-value=7.8e-25 Score=189.69 Aligned_cols=130 Identities=25% Similarity=0.336 Sum_probs=105.2
Q ss_pred EEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 77 i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.++. ++|++..++. ++||++.+ |++++|+||||||||||+++|+
T Consensus 3 ~~~l~----~~~~~~~~l~--------~~~~~~~~----------------------Ge~~~i~G~nGsGKStLl~~l~- 47 (144)
T cd03221 3 LENLS----KTYGGKLLLK--------DISLTINP----------------------GDRIGLVGRNGAGKSTLLKLIA- 47 (144)
T ss_pred EEEEE----EEECCceEEE--------eeEEEECC----------------------CCEEEEECCCCCCHHHHHHHHc-
Confidence 44555 5687666654 99999999 9999999999999999999999
Q ss_pred cccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEE
Q psy14062 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIA 236 (388)
Q Consensus 157 ~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (388)
|+. ++.+|++.+++. ..++|++|
T Consensus 48 ---G~~-~~~~G~i~~~~~--------------~~i~~~~~--------------------------------------- 70 (144)
T cd03221 48 ---GEL-EPDEGIVTWGST--------------VKIGYFEQ--------------------------------------- 70 (144)
T ss_pred ---CCC-CCCceEEEECCe--------------EEEEEEcc---------------------------------------
Confidence 998 778999766431 12444443
Q ss_pred EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHH
Q psy14062 237 RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLK 311 (388)
Q Consensus 237 r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~ 311 (388)
||+||+||+.+|++|+. +|+++|+|||+++| ..+...++++ + .+++++||+++
T Consensus 71 ------------lS~G~~~rv~laral~~------~p~illlDEP~~~LD~~~~~~l~~~l~~~---~-~til~~th~~~ 128 (144)
T cd03221 71 ------------LSGGEKMRLALAKLLLE------NPNLLLLDEPTNHLDLESIEALEEALKEY---P-GTVILVSHDRY 128 (144)
T ss_pred ------------CCHHHHHHHHHHHHHhc------CCCEEEEeCCccCCCHHHHHHHHHHHHHc---C-CEEEEEECCHH
Confidence 99999999999999999 99999999999999 4455555544 2 35999999999
Q ss_pred HHHHHHHHH
Q psy14062 312 ALEPELRKA 320 (388)
Q Consensus 312 ~l~~~~d~~ 320 (388)
.+...+|++
T Consensus 129 ~~~~~~d~v 137 (144)
T cd03221 129 FLDQVATKI 137 (144)
T ss_pred HHHHhCCEE
Confidence 998887764
No 276
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.90 E-value=6.2e-26 Score=259.41 Aligned_cols=196 Identities=16% Similarity=0.230 Sum_probs=147.2
Q ss_pred CcEEEEEEEeeceEEec--CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 73 PRLIITKIVAFNFKSYA--GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~--~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
+.+.+.+++ |+|+ ++.++ +||||++.+ |++++|+||||||||||
T Consensus 927 ~~L~I~nLs----K~y~~~~k~aL--------~~lsl~I~~----------------------Gei~aLLG~NGAGKSTL 972 (2272)
T TIGR01257 927 PGVCVKNLV----KIFEPSGRPAV--------DRLNITFYE----------------------NQITAFLGHNGAGKTTT 972 (2272)
T ss_pred ceEEEEeEE----EEecCCCceEE--------EeeEEEEcC----------------------CcEEEEECCCCChHHHH
Confidence 357778888 8895 45555 499999999 99999999999999999
Q ss_pred HhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccC
Q psy14062 151 IDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIP 229 (388)
Q Consensus 151 l~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~ 229 (388)
+++|+ |++ ++.+|++.+.|..+. ......| +.+++++|++..++.+++.+....+.+..+..... ...+.
T Consensus 973 LkiLa----GLl-~PtsG~I~i~G~dI~---~~~~~~r-~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~ 1043 (2272)
T TIGR01257 973 LSILT----GLL-PPTSGTVLVGGKDIE---TNLDAVR-QSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEME 1043 (2272)
T ss_pred HHHHh----cCC-CCCceEEEECCEECc---chHHHHh-hcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999 999 778999888776542 1112233 46999999988888888776544332322221111 01111
Q ss_pred CceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHH
Q psy14062 230 GTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQ 304 (388)
Q Consensus 230 ~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii 304 (388)
..+...++....++.+..|||||+||+.||+||+. +|+++||||||++| ..+.+++.+++ ++. +|+
T Consensus 1044 -~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~------~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~-TII 1114 (2272)
T TIGR01257 1044 -AMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVG------DAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGR-TII 1114 (2272)
T ss_pred -HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc------CCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCC-EEE
Confidence 12222334445577899999999999999999999 99999999999999 77888888875 344 599
Q ss_pred HHHHhHHHHHHHHHHH
Q psy14062 305 LVETDLKALEPELRKA 320 (388)
Q Consensus 305 ~vtH~l~~l~~~~d~~ 320 (388)
++||+++++...+|++
T Consensus 1115 ltTHdmdea~~laDrI 1130 (2272)
T TIGR01257 1115 MSTHHMDEADLLGDRI 1130 (2272)
T ss_pred EEECCHHHHHHhCCEE
Confidence 9999999999998865
No 277
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.90 E-value=1.8e-24 Score=199.30 Aligned_cols=184 Identities=36% Similarity=0.502 Sum_probs=128.1
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
|.+..+++.|||+|++..++++++ -++++|+|||||||||++++|
T Consensus 1 ~~~~~l~l~nfk~~~~~~~l~~~~-----------------------------------~~i~~ivGpNGaGKSTll~~i 45 (212)
T cd03274 1 LIITKLVLENFKSYAGEQVIGPFH-----------------------------------KSFSAIVGPNGSGKSNVIDSM 45 (212)
T ss_pred CeEEEEEEECcccCCCCeeeccCC-----------------------------------CCeEEEECCCCCCHHHHHHHH
Confidence 467899999999999988876333 359999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccC--------CCCcccc
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIID--------KPNEEYE 226 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~--------~~~~~~~ 226 (388)
. .+.|. +....|.++++++++....++.++..++..+|....+ .......
T Consensus 46 ~----~~~G~------------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 103 (212)
T cd03274 46 L----FVFGF------------------RASKMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNR 103 (212)
T ss_pred H----HHhcc------------------CHHHhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCc
Confidence 8 33332 1122344568999999888888889999888865321 1111110
Q ss_pred c--cCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 227 I--IPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 227 ~--~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
. .......+..+....+..+..||+||+||+.+|++++..+. ..|+++++|||+++| ..+.+.+.++.+.
T Consensus 104 ~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~--~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~- 180 (212)
T cd03274 104 FLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHY--KPTPLYVMDEIDAALDFRNVSIVANYIKERTKN- 180 (212)
T ss_pred eEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhccc--CCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCC-
Confidence 0 01223344454444556788999999999999999974100 147999999999999 6666677766433
Q ss_pred hhHHHHHHHhHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~ 320 (388)
. +++++||+. ++.+.||++
T Consensus 181 ~-~~iivs~~~-~~~~~~d~v 199 (212)
T cd03274 181 A-QFIVISLRN-NMFELADRL 199 (212)
T ss_pred C-EEEEEECcH-HHHHhCCEE
Confidence 3 588888984 566666654
No 278
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.8e-25 Score=232.40 Aligned_cols=182 Identities=16% Similarity=0.127 Sum_probs=126.7
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|+++.+|+ |+||+|.+ |++++|+|||||||||||++|
T Consensus 2 l~i~~ls----~~~~~~~il~--------~vsl~i~~----------------------Ge~~~liG~NGsGKSTLl~~l 47 (530)
T PRK15064 2 LSTANIT----MQFGAKPLFE--------NISVKFGG----------------------GNRYGLIGANGCGKSTFMKIL 47 (530)
T ss_pred EEEEEEE----EEeCCcEeEe--------CCEEEECC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 4566666 7898777755 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEE-ecc----------ccCCC--
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIH-FAQ----------IIDKP-- 221 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~-~~~----------~~~~~-- 221 (388)
+ |++ ++.+|++.+.+. ..+++++|.+..++..++.++... ... .....
T Consensus 48 ~----Gl~-~p~~G~i~~~~~--------------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 108 (530)
T PRK15064 48 G----GDL-EPSAGNVSLDPN--------------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEM 108 (530)
T ss_pred h----CCC-CCCCceEEecCC--------------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhccccc
Confidence 9 998 778999766431 248999998766665554332211 000 00000
Q ss_pred --------------------CccccccCCceEEEEEEee-eCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEecc
Q psy14062 222 --------------------NEEYEIIPGTDLEIARTAF-YDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQE 280 (388)
Q Consensus 222 --------------------~~~~~~~~~~~l~~~r~~~-~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDE 280 (388)
......+ ...+...++.. ..+..+..|||||+||+.||++|+. +|++|||||
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~------~p~lLlLDE 181 (530)
T PRK15064 109 SEEDGMKVADLEVKFAEMDGYTAEARA-GELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFS------NPDILLLDE 181 (530)
T ss_pred ccchHHHHHHHHHHHHhcCchhHHHHH-HHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhc------CCCEEEEcC
Confidence 0000000 01122222221 1235678999999999999999999 999999999
Q ss_pred chhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 281 PIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 281 P~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
||++| ..+.+.+. +.+. +|+++||+++.+.+.||++
T Consensus 182 Pt~~LD~~~~~~l~~~l~---~~~~-tiiivsHd~~~~~~~~d~i 222 (530)
T PRK15064 182 PTNNLDINTIRWLEDVLN---ERNS-TMIIISHDRHFLNSVCTHM 222 (530)
T ss_pred CCcccCHHHHHHHHHHHH---hCCC-eEEEEeCCHHHHHhhcceE
Confidence 99999 34444443 2344 5999999999999998865
No 279
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.90 E-value=1.7e-25 Score=233.76 Aligned_cols=182 Identities=16% Similarity=0.156 Sum_probs=129.6
Q ss_pred cEEEEEEEeeceEEec-CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSYA-GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~-~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
++.+.+++ ++|+ ++.+|+ ||||+|.+ |++++|+|||||||||||+
T Consensus 6 ~l~i~~l~----~~y~~~~~il~--------~vs~~i~~----------------------Ge~~~iiG~NGsGKSTLlk 51 (556)
T PRK11819 6 IYTMNRVS----KVVPPKKQILK--------DISLSFFP----------------------GAKIGVLGLNGAGKSTLLR 51 (556)
T ss_pred EEEEeeEE----EEeCCCCeeee--------CceEEECC----------------------CCEEEEECCCCCCHHHHHH
Confidence 55666666 7898 666655 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEE-ecccc-------------
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIH-FAQII------------- 218 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~-~~~~~------------- 218 (388)
+|+ |++ ++.+|++.+.+ ...+++++|++..++..++.++... +..+.
T Consensus 52 ~i~----G~~-~p~~G~i~~~~--------------~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 112 (556)
T PRK11819 52 IMA----GVD-KEFEGEARPAP--------------GIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAY 112 (556)
T ss_pred HHh----CCC-CCCCceEEecC--------------CCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 999 998 77899976532 1359999999887776666544321 11000
Q ss_pred CCCCcc--------------------c---cccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCce
Q psy14062 219 DKPNEE--------------------Y---EIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRF 275 (388)
Q Consensus 219 ~~~~~~--------------------~---~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~ 275 (388)
...... + ..+. ..+...++. ..++++..|||||+||+.||++|.. +|++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~gl~-~~~~~~~~LSgGqkqrv~la~al~~------~p~v 184 (556)
T PRK11819 113 AEPDADFDALAAEQGELQEIIDAADAWDLDSQLE-IAMDALRCP-PWDAKVTKLSGGERRRVALCRLLLE------KPDM 184 (556)
T ss_pred ccCchhhHHHHHHHHHHHHHHHhcCccchHHHHH-HHHHhCCCC-cccCchhhcCHHHHHHHHHHHHHhC------CCCE
Confidence 000000 0 0000 011112221 1356788999999999999999999 9999
Q ss_pred EEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 276 LILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 276 LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
|||||||++| +.+...+.++ .. +|+++||+++.+...+|++
T Consensus 185 lLLDEPt~~LD~~~~~~l~~~L~~~---~~-tviiisHd~~~~~~~~d~i 230 (556)
T PRK11819 185 LLLDEPTNHLDAESVAWLEQFLHDY---PG-TVVAVTHDRYFLDNVAGWI 230 (556)
T ss_pred EEEcCCCCcCChHHHHHHHHHHHhC---CC-eEEEEeCCHHHHHhhcCeE
Confidence 9999999999 4444455544 23 6999999999999998865
No 280
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.90 E-value=1.1e-25 Score=228.55 Aligned_cols=190 Identities=16% Similarity=0.143 Sum_probs=124.7
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.++. ++|++... ..+|++|||+|.+ |++++|+|||||||||||+
T Consensus 20 ~mL~lknL~----~~~~~~~~-----~~IL~nVSfsI~~----------------------GEivgIiGpNGSGKSTLLk 68 (549)
T PRK13545 20 PFDKLKDLF----FRSKDGEY-----HYALNNISFEVPE----------------------GEIVGIIGLNGSGKSTLSN 68 (549)
T ss_pred ceeEEEEEE----EecCCCcc-----ceEEeeeEEEEeC----------------------CCEEEEEcCCCCCHHHHHH
Confidence 356666665 55765310 0134599999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCce
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~ 232 (388)
+|+ |++ ++.+|++.+.|.... ++ +.+...+..+..++........+.............
T Consensus 69 iLa----GLl-~P~sGeI~I~G~~~~-------------i~---~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~el 127 (549)
T PRK13545 69 LIA----GVT-MPNKGTVDIKGSAAL-------------IA---ISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEI 127 (549)
T ss_pred HHh----CCC-CCCceEEEECCEeee-------------EE---eccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHH
Confidence 999 998 788999877653210 11 111122223332221111000011111000000011
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++....++++..|||||+||+.||++|+. +|++||||||+++| ..+...+.++++++. +++++|
T Consensus 128 Le~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~------~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~-TIIIVS 200 (549)
T PRK13545 128 IEFADIGKFIYQPVKTYSSGMKSRLGFAISVHI------NPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGK-TIFFIS 200 (549)
T ss_pred HHHcCChhHhhCCcccCCHHHHHHHHHHHHHHh------CCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCC-EEEEEE
Confidence 222233334467789999999999999999999 99999999999999 567777777765554 599999
Q ss_pred HhHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAV 321 (388)
Q Consensus 308 H~l~~l~~~~d~~~ 321 (388)
|+++.+.+.||++.
T Consensus 201 Hdl~~i~~l~DrIi 214 (549)
T PRK13545 201 HSLSQVKSFCTKAL 214 (549)
T ss_pred CCHHHHHHhCCEEE
Confidence 99999999988763
No 281
>PRK13409 putative ATPase RIL; Provisional
Probab=99.90 E-value=1.6e-25 Score=234.45 Aligned_cols=184 Identities=14% Similarity=0.163 Sum_probs=135.7
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|++. .| +++||+|.+ |++++|+||||||||||++
T Consensus 339 ~~l~~~~ls----~~~~~~-~l--------~~~s~~i~~----------------------Geiv~l~G~NGsGKSTLlk 383 (590)
T PRK13409 339 TLVEYPDLT----KKLGDF-SL--------EVEGGEIYE----------------------GEVIGIVGPNGIGKTTFAK 383 (590)
T ss_pred eEEEEcceE----EEECCE-EE--------EecceEECC----------------------CCEEEEECCCCCCHHHHHH
Confidence 456666666 678763 23 399999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCce
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~ 232 (388)
+|+ |++ ++.+|++.+. ..++|++|+...++..++.++.......+. .. . . ....
T Consensus 384 ~L~----Gl~-~p~~G~I~~~----------------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~--~~-~-~-~~~~ 437 (590)
T PRK13409 384 LLA----GVL-KPDEGEVDPE----------------LKISYKPQYIKPDYDGTVEDLLRSITDDLG--SS-Y-Y-KSEI 437 (590)
T ss_pred HHh----CCC-CCCceEEEEe----------------eeEEEecccccCCCCCcHHHHHHHHhhhcC--hH-H-H-HHHH
Confidence 999 998 7789986552 148999998766555555443211111000 00 0 0 0112
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++....++++..|||||+||+.||++|+. +|++|||||||++| ..+...++++.++...+++++|
T Consensus 438 L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~------~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivs 511 (590)
T PRK13409 438 IKPLQLERLLDKNVKDLSGGELQRVAIAACLSR------DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVD 511 (590)
T ss_pred HHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhc------CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 222233334577899999999999999999999 99999999999999 7778888888765334599999
Q ss_pred HhHHHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAVNF 323 (388)
Q Consensus 308 H~l~~l~~~~d~~~~y 323 (388)
||++.+...+|++..+
T Consensus 512 HD~~~~~~~aDrvivl 527 (590)
T PRK13409 512 HDIYMIDYISDRLMVF 527 (590)
T ss_pred CCHHHHHHhCCEEEEE
Confidence 9999999999987554
No 282
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.90 E-value=1.6e-25 Score=212.96 Aligned_cols=173 Identities=14% Similarity=0.110 Sum_probs=116.9
Q ss_pred CcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhh
Q psy14062 99 TGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLF 178 (388)
Q Consensus 99 ~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~ 178 (388)
..+|++|||+|.+ |++++|+||||||||||+++|+ |++ ++.+|++.+.+.
T Consensus 37 ~~il~~is~~i~~----------------------Ge~~~liG~NGsGKSTLlk~L~----Gl~-~p~~G~I~~~g~--- 86 (264)
T PRK13546 37 FFALDDISLKAYE----------------------GDVIGLVGINGSGKSTLSNIIG----GSL-SPTVGKVDRNGE--- 86 (264)
T ss_pred eEEEeeeEEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh----CCc-CCCceEEEECCE---
Confidence 4467899999999 9999999999999999999999 998 788999776653
Q ss_pred hcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHH
Q psy14062 179 VFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKE 258 (388)
Q Consensus 179 vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~ 258 (388)
++++++.+...+..++.++........+.............+...++..+.+..+..|||||+||+.
T Consensus 87 -------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~ 153 (264)
T PRK13546 87 -------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLG 153 (264)
T ss_pred -------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHH
Confidence 1222333222222222221110000001000000000000111122223345678899999999999
Q ss_pred HHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHH
Q psy14062 259 VAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 259 Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
+|++|+. +|+++|||||+++| +.+...+.++++.+. +++++||++..+...++++.
T Consensus 154 Laral~~------~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~-tiIiisH~~~~i~~~~d~i~ 214 (264)
T PRK13546 154 FSINITV------NPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNK-TIFFVSHNLGQVRQFCTKIA 214 (264)
T ss_pred HHHHHhh------CCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHcCEEE
Confidence 9999999 99999999999999 567777777765554 59999999999999988763
No 283
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.90 E-value=1.2e-25 Score=214.86 Aligned_cols=189 Identities=17% Similarity=0.222 Sum_probs=128.0
Q ss_pred EEEEEEEeeceEEec--CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 75 LIITKIVAFNFKSYA--GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 75 l~i~~l~~~~fksy~--~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+.+.+++ ++|. +..+ |+||||+|.+ |++++|+||||||||||++
T Consensus 3 i~~~nls----~~~~~~~~~~--------l~~isl~I~~----------------------Ge~~~IvG~nGsGKSTLl~ 48 (275)
T cd03289 3 MTVKDLT----AKYTEGGNAV--------LENISFSISP----------------------GQRVGLLGRTGSGKSTLLS 48 (275)
T ss_pred EEEEEEE----EEeCCCCCcc--------eeceEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 4556666 6784 3444 4599999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCce
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~ 232 (388)
+|+ |++ + .+|++.++|..+... ....+| +.++|+||++.+++. +..++...+.. ....... ..
T Consensus 49 ~L~----gl~-~-~~G~I~i~g~~i~~~--~~~~lr-~~i~~v~q~~~lf~~-tv~~nl~~~~~---~~~~~~~----~~ 111 (275)
T cd03289 49 AFL----RLL-N-TEGDIQIDGVSWNSV--PLQKWR-KAFGVIPQKVFIFSG-TFRKNLDPYGK---WSDEEIW----KV 111 (275)
T ss_pred HHh----hhc-C-CCcEEEECCEEhhhC--CHHHHh-hhEEEECCCcccchh-hHHHHhhhccC---CCHHHHH----HH
Confidence 999 998 6 589988887655322 222333 469999999887764 44333222210 0000000 00
Q ss_pred EEEEEEeeeCCC-----------CeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHH
Q psy14062 233 LEIARTAFYDNS-----------SYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEER 296 (388)
Q Consensus 233 l~~~r~~~~~~~-----------~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~ 296 (388)
+...++..+.+. ....|||||+||+++|++|+. +|+++|||||+++| ..+...+.+..
T Consensus 112 l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~------~p~illlDEpts~LD~~~~~~l~~~l~~~~ 185 (275)
T cd03289 112 AEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLS------KAKILLLDEPSAHLDPITYQVIRKTLKQAF 185 (275)
T ss_pred HHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence 111111111112 234599999999999999999 99999999999999 55555666543
Q ss_pred HHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 297 TEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 297 ~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
. + .+++++||+++.+.. ||++..+
T Consensus 186 ~-~-~tii~isH~~~~i~~-~dri~vl 209 (275)
T cd03289 186 A-D-CTVILSEHRIEAMLE-CQRFLVI 209 (275)
T ss_pred C-C-CEEEEEECCHHHHHh-CCEEEEe
Confidence 2 3 359999999988865 8876333
No 284
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2e-25 Score=232.12 Aligned_cols=183 Identities=14% Similarity=0.180 Sum_probs=130.3
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|+++.++. ++||+|.+ |++++|+||||||||||++
T Consensus 318 ~~l~~~~l~----~~~~~~~~l~--------~is~~i~~----------------------Ge~~~l~G~NGsGKSTLl~ 363 (530)
T PRK15064 318 NALEVENLT----KGFDNGPLFK--------NLNLLLEA----------------------GERLAIIGENGVGKTTLLR 363 (530)
T ss_pred ceEEEEeeE----EeeCCceeec--------CcEEEECC----------------------CCEEEEECCCCCCHHHHHH
Confidence 456677777 7898776655 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccC--CCCCcceEEEEEEeccccCCCCccccccCC
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD--QVGGVSRCSVAIHFAQIIDKPNEEYEIIPG 230 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~--~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~ 230 (388)
+|+ |++ ++.+|++.+.+. ..++|++|++. +++..++.++...+. ..... ...+.
T Consensus 364 ~i~----G~~-~p~~G~i~~~~~--------------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~~~~-~~~~~- 419 (530)
T PRK15064 364 TLV----GEL-EPDSGTVKWSEN--------------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QEGDD-EQAVR- 419 (530)
T ss_pred HHh----CCC-CCCCeEEEECCc--------------eEEEEEcccccccCCCCCcHHHHHHHhc---cCCcc-HHHHH-
Confidence 999 998 777999765431 35899999864 333344333211110 00000 00000
Q ss_pred ceEEEEEE-eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHH
Q psy14062 231 TDLEIART-AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQ 304 (388)
Q Consensus 231 ~~l~~~r~-~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii 304 (388)
..+...+. ....+.++..|||||+||+.||++|+. +|++|||||||++| +.+...+.++ +. +|+
T Consensus 420 ~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~-tvi 489 (530)
T PRK15064 420 GTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQ------KPNVLVMDEPTNHMDMESIESLNMALEKY---EG-TLI 489 (530)
T ss_pred HHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhc------CCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CC-EEE
Confidence 11222222 123467899999999999999999999 99999999999999 5555555543 23 599
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q psy14062 305 LVETDLKALEPELRKAVNF 323 (388)
Q Consensus 305 ~vtH~l~~l~~~~d~~~~y 323 (388)
++||+++.+...||++...
T Consensus 490 ~vsHd~~~~~~~~d~i~~l 508 (530)
T PRK15064 490 FVSHDREFVSSLATRIIEI 508 (530)
T ss_pred EEeCCHHHHHHhCCEEEEE
Confidence 9999999999999876443
No 285
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.90 E-value=3.1e-25 Score=231.70 Aligned_cols=186 Identities=18% Similarity=0.167 Sum_probs=132.9
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|+++.+|. ||||+|.+ |++++|+|||||||||||+
T Consensus 321 ~~l~~~~l~----~~~~~~~~l~--------~isl~i~~----------------------Ge~~~l~G~NGsGKSTLl~ 366 (552)
T TIGR03719 321 KVIEAENLS----KGFGDKLLID--------DLSFKLPP----------------------GGIVGVIGPNGAGKSTLFR 366 (552)
T ss_pred eEEEEeeEE----EEECCeeeec--------cceEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 456677777 7898777655 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccC-CCCCcceEEEEEEeccccCCCCccccccCCc
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD-QVGGVSRCSVAIHFAQIIDKPNEEYEIIPGT 231 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~-~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~ 231 (388)
+|+ |++ ++.+|++.+.+ . ..++|++|++. .++..++.++........+...... .. ..
T Consensus 367 ~l~----G~~-~p~~G~i~~~~--------~------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~-~~-~~ 425 (552)
T TIGR03719 367 MIT----GQE-QPDSGTIKIGE--------T------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREV-PS-RA 425 (552)
T ss_pred HHc----CCC-CCCCeEEEECC--------c------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchH-HH-HH
Confidence 999 998 77899975521 1 14899999863 5555565443221111111110000 00 01
Q ss_pred eEEEEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 232 DLEIARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 232 ~l~~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
.+...++. ...++++..|||||+||+.||++|+. +|+++||||||++| +.+...+.++. . ++++
T Consensus 426 ~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-~vii 495 (552)
T TIGR03719 426 YVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKS------GGNVLLLDEPTNDLDVETLRALEEALLEFA---G-CAVV 495 (552)
T ss_pred HHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---C-eEEE
Confidence 22222322 12367889999999999999999999 99999999999999 55666666552 3 5999
Q ss_pred HHHhHHHHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKAVNF 323 (388)
Q Consensus 306 vtH~l~~l~~~~d~~~~y 323 (388)
+||+++.+.+.||++...
T Consensus 496 vsHd~~~~~~~~d~i~~l 513 (552)
T TIGR03719 496 ISHDRWFLDRIATHILAF 513 (552)
T ss_pred EeCCHHHHHHhCCEEEEE
Confidence 999999999999887554
No 286
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.89 E-value=3.6e-25 Score=231.38 Aligned_cols=186 Identities=19% Similarity=0.169 Sum_probs=132.8
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|+++.+|. ||||+|.+ |++++|+||||||||||++
T Consensus 323 ~~l~~~~l~----~~~~~~~~l~--------~isl~i~~----------------------Ge~~~l~G~NGsGKSTLl~ 368 (556)
T PRK11819 323 KVIEAENLS----KSFGDRLLID--------DLSFSLPP----------------------GGIVGIIGPNGAGKSTLFK 368 (556)
T ss_pred eEEEEEeEE----EEECCeeeec--------ceeEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 456777777 7898877755 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEeccc-CCCCCcceEEEEEEeccccCCCCccccccCCc
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKS-DQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGT 231 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~-~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~ 231 (388)
+|+ |++ ++.+|++.+.+ . ..++|++|++ ..++..++.++........+....... . ..
T Consensus 369 ~i~----G~~-~p~~G~i~~~~--------~------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~-~~ 427 (556)
T PRK11819 369 MIT----GQE-QPDSGTIKIGE--------T------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIP-S-RA 427 (556)
T ss_pred HHh----CCC-CCCCeEEEECC--------c------eEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHH-H-HH
Confidence 999 998 77899975521 1 1489999986 455555554432211111111000000 0 01
Q ss_pred eEEEEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 232 DLEIARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 232 ~l~~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
.+...++. ...++++..|||||+||+.||++|+. +|++|||||||++| +.+...+.++. . ++++
T Consensus 428 ~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-tvi~ 497 (556)
T PRK11819 428 YVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQ------GGNVLLLDEPTNDLDVETLRALEEALLEFP---G-CAVV 497 (556)
T ss_pred HHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhc------CCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---C-eEEE
Confidence 12222222 12367889999999999999999999 99999999999999 55555665542 3 5899
Q ss_pred HHHhHHHHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKAVNF 323 (388)
Q Consensus 306 vtH~l~~l~~~~d~~~~y 323 (388)
+||+++.+...||++...
T Consensus 498 vtHd~~~~~~~~d~i~~l 515 (556)
T PRK11819 498 ISHDRWFLDRIATHILAF 515 (556)
T ss_pred EECCHHHHHHhCCEEEEE
Confidence 999999999999987544
No 287
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.89 E-value=1.4e-24 Score=209.51 Aligned_cols=209 Identities=13% Similarity=0.153 Sum_probs=146.9
Q ss_pred CCCcEEEEEEEeeceEEecCce-----eecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCC
Q psy14062 71 TGPRLIITKIVAFNFKSYAGYV-----TLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGS 145 (388)
Q Consensus 71 ~~~~l~i~~l~~~~fksy~~~~-----~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGs 145 (388)
.++.|...+++ ..|.-+. ..++ ..||++|||++.+ |+..+|||.|||
T Consensus 273 ~~~ll~~~~v~----v~f~i~~g~~~r~~~~--~~AVd~isl~L~~----------------------gqTlGlVGESGS 324 (534)
T COG4172 273 APVLLEVEDLR----VWFPIKGGFLRRTVDH--LRAVDGISLTLRR----------------------GQTLGLVGESGS 324 (534)
T ss_pred CCceEEecceE----EEEecCCccccccchh--eEEeccceeEecC----------------------CCeEEEEecCCC
Confidence 44566777777 3342211 1122 3588999999999 999999999999
Q ss_pred ChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccc-hhhhhccceeEecccC--CCCCcceEEEEEEeccccCCCC
Q psy14062 146 GKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRA-SKIRANKLSVLMHKSD--QVGGVSRCSVAIHFAQIIDKPN 222 (388)
Q Consensus 146 GKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~-~~lr~~~i~~l~q~~~--~~~~~~~~eV~~~~~~~~~~~~ 222 (388)
|||||=.++. .++ +. .|.+.+.|..+..+.... ..+| +++.+|||+|. +.|.+++.++.-.-...+....
T Consensus 325 GKsTlG~all----rL~-~s-~G~I~F~G~~i~~~~~~~mrplR-~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~l 397 (534)
T COG4172 325 GKSTLGLALL----RLI-PS-QGEIRFDGQDIDGLSRKEMRPLR-RRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKL 397 (534)
T ss_pred CcchHHHHHH----hhc-Cc-CceEEECCccccccChhhhhhhh-hhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCC
Confidence 9999999999 887 54 599999888776433322 2234 45999999975 4466666554321112222111
Q ss_pred c---cccccCCceEEEEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhH
Q psy14062 223 E---EYEIIPGTDLEIARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYD 293 (388)
Q Consensus 223 ~---~~~~~~~~~l~~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~ 293 (388)
. ....+.. .+.-.++. ...++++...||||+||.+|||++.. +|++++||||||+| .+|+++++
T Consensus 398 s~~eR~~rv~~-aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliL------kP~~i~LDEPTSALD~SVQaQvv~LLr 470 (534)
T COG4172 398 SAAERDQRVIE-ALEEVGLDPATRNRYPHEFSGGQRQRIAIARALIL------KPELILLDEPTSALDRSVQAQVLDLLR 470 (534)
T ss_pred CHHHHHHHHHH-HHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhc------CCcEEEecCCchHhhHHHHHHHHHHHH
Confidence 1 1111110 11111111 12367899999999999999999999 99999999999999 88999999
Q ss_pred HHHHHhhhHHHHHHHhHHHHHHHHHHHH
Q psy14062 294 EERTEKLTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 294 el~~e~~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
.+.++.....++++||+..++..|+++.
T Consensus 471 ~LQ~k~~LsYLFISHDL~VvrAl~~~vi 498 (534)
T COG4172 471 DLQQKHGLSYLFISHDLAVVRALCHRVI 498 (534)
T ss_pred HHHHHhCCeEEEEeccHHHHHHhhceEE
Confidence 9988766668999999999999998764
No 288
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.89 E-value=2.5e-25 Score=205.58 Aligned_cols=179 Identities=15% Similarity=0.171 Sum_probs=117.4
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
++|+||+|.+ |++++|+||||||||||+++|+ |++ ++.+|++.+.+..+....
T Consensus 17 l~~vs~~i~~----------------------Ge~~~i~G~nGsGKSTLl~~i~----G~~-~~~~G~i~~~g~~~~~~~ 69 (218)
T cd03290 17 LSNINIRIPT----------------------GQLTMIVGQVGCGKSSLLLAIL----GEM-QTLEGKVHWSNKNESEPS 69 (218)
T ss_pred eeeeEEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh----ccC-CCCCCeEEECCccccccc
Confidence 4499999999 9999999999999999999999 998 778999888775443211
Q ss_pred cc-chhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEE--------EeeeCCCCeeeeCCc
Q psy14062 182 YR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIAR--------TAFYDNSSYYTLNGK 252 (388)
Q Consensus 182 ~~-~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r--------~~~~~~~~~~~LSgG 252 (388)
.. ....+++.++|++|++..++ .+..++...... . ......... ..+.+.. .....+..+..||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~~~~-~t~~~nl~~~~~-~--~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G 144 (218)
T cd03290 70 FEATRSRNRYSVAYAAQKPWLLN-ATVEENITFGSP-F--NKQRYKAVT-DACSLQPDIDLLPFGDQTEIGERGINLSGG 144 (218)
T ss_pred ccccchhhcceEEEEcCCCcccc-ccHHHHHhhcCc-C--CHHHHHHHH-HHhCcHHHHHhCcCccccCcccCCCcCCHH
Confidence 10 01112346999999987653 343332221110 0 000000000 0000000 000123467899999
Q ss_pred cccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHh--hhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 253 KVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYG--KYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 253 q~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~--~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
|+||+.||++|+. +|+++|+|||+++| +.+.. ++..+++.+. +++++||+++.+. .+|++
T Consensus 145 ~~qrv~laral~~------~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~-tii~~sH~~~~~~-~~d~i 211 (218)
T cd03290 145 QRQRICVARALYQ------NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKR-TLVLVTHKLQYLP-HADWI 211 (218)
T ss_pred HHHHHHHHHHHhh------CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCC-EEEEEeCChHHHh-hCCEE
Confidence 9999999999999 99999999999999 44444 4444444444 5999999998875 46643
No 289
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.89 E-value=6.6e-25 Score=207.93 Aligned_cols=194 Identities=12% Similarity=0.081 Sum_probs=130.0
Q ss_pred CcEEEEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 73 PRLIITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
+.+.+.+++ ++|++ ..+ +++|||+|.+ |++++|+||||||||||
T Consensus 18 ~~i~~~~l~----~~~~~~~~~i--------l~~isl~i~~----------------------Ge~~~i~G~nGsGKSTL 63 (257)
T cd03288 18 GEIKIHDLC----VRYENNLKPV--------LKHVKAYIKP----------------------GQKVGICGRTGSGKSSL 63 (257)
T ss_pred ceEEEEEEE----EEeCCCCCcc--------eeEEEEEEcC----------------------CCEEEEECCCCCCHHHH
Confidence 356677776 67875 344 4499999999 99999999999999999
Q ss_pred HhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccC-
Q psy14062 151 IDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIP- 229 (388)
Q Consensus 151 l~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~- 229 (388)
+++|+ |++ ++.+|++.+.+..+.-. ..... ++.+++++|++..++. +..++.... .... .........
T Consensus 64 l~~l~----Gl~-~~~~G~i~i~g~~i~~~--~~~~~-~~~i~~v~q~~~l~~~-tv~~nl~~~-~~~~-~~~~~~~l~~ 132 (257)
T cd03288 64 SLAFF----RMV-DIFDGKIVIDGIDISKL--PLHTL-RSRLSIILQDPILFSG-SIRFNLDPE-CKCT-DDRLWEALEI 132 (257)
T ss_pred HHHHH----ccc-CCCCCeEEECCEEhhhC--CHHHH-hhhEEEECCCCccccc-HHHHhcCcC-CCCC-HHHHHHHHHH
Confidence 99999 998 88899988877654311 11122 3569999999876543 433221110 0000 000000000
Q ss_pred -C--ceEEEE--EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 230 -G--TDLEIA--RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 230 -~--~~l~~~--r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
. ..+... +.....+.....||+||+||+.+|++|+. +|+++|+|||+++| +.+...+.++. ++
T Consensus 133 ~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~------~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~ 205 (257)
T cd03288 133 AQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR------KSSILIMDEATASIDMATENILQKVVMTAF-AD 205 (257)
T ss_pred hCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc------CCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CC
Confidence 0 000000 11112234567899999999999999999 99999999999999 55556666553 34
Q ss_pred hhHHHHHHHhHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~ 320 (388)
. +++++||+++.+.. +|++
T Consensus 206 ~-tiii~sh~~~~~~~-~dri 224 (257)
T cd03288 206 R-TVVTIAHRVSTILD-ADLV 224 (257)
T ss_pred C-EEEEEecChHHHHh-CCEE
Confidence 3 59999999999875 7765
No 290
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.89 E-value=7.2e-25 Score=228.98 Aligned_cols=183 Identities=17% Similarity=0.156 Sum_probs=128.5
Q ss_pred cEEEEEEEeeceEEec-CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSYA-GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~-~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
++.+.+++ ++|+ ++.+|. |+||+|.+ |++++|+|||||||||||+
T Consensus 4 ~i~~~nls----~~~~~~~~il~--------~is~~i~~----------------------Ge~~~liG~NGsGKSTLl~ 49 (552)
T TIGR03719 4 IYTMNRVS----KVVPPKKEILK--------DISLSFFP----------------------GAKIGVLGLNGAGKSTLLR 49 (552)
T ss_pred EEEEeeEE----EecCCCCeeec--------CceEEECC----------------------CCEEEEECCCCCCHHHHHH
Confidence 45566666 7897 666654 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEE-eccc-------------c
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIH-FAQI-------------I 218 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~-~~~~-------------~ 218 (388)
+|+ |++ ++.+|++.+.+ ...++|++|++..++..++.++... +... .
T Consensus 50 ~i~----G~~-~p~~G~i~~~~--------------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~ 110 (552)
T TIGR03719 50 IMA----GVD-KEFNGEARPAP--------------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKF 110 (552)
T ss_pred HHh----CCC-CCCCceEEecC--------------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 999 998 77899976532 1359999999887766665543321 1100 0
Q ss_pred CCCCcc-------c-------cccC--------CceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceE
Q psy14062 219 DKPNEE-------Y-------EIIP--------GTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276 (388)
Q Consensus 219 ~~~~~~-------~-------~~~~--------~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~L 276 (388)
...... + .... ...+...+.. ..+.++..|||||+||+.||++|+. +|++|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~LSgGqkqrv~la~al~~------~p~lL 183 (552)
T TIGR03719 111 AEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDADVTKLSGGERRRVALCRLLLS------KPDML 183 (552)
T ss_pred ccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccCchhhcCHHHHHHHHHHHHHhc------CCCEE
Confidence 000000 0 0000 0011111111 1356788999999999999999999 99999
Q ss_pred EeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 277 ILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 277 LlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
||||||++| +.+.+.+.++ .. +++++||+++.+...||++
T Consensus 184 LLDEPt~~LD~~~~~~l~~~L~~~---~~-tvIiisHd~~~~~~~~d~v 228 (552)
T TIGR03719 184 LLDEPTNHLDAESVAWLEQHLQEY---PG-TVVAVTHDRYFLDNVAGWI 228 (552)
T ss_pred EEcCCCCCCChHHHHHHHHHHHhC---CC-eEEEEeCCHHHHHhhcCeE
Confidence 999999999 4444555443 23 5999999999999998865
No 291
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.89 E-value=2.3e-24 Score=221.39 Aligned_cols=190 Identities=14% Similarity=0.184 Sum_probs=129.6
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|+++.+|. ++||++.+ |+.+||||+|||||||||++
T Consensus 3 ~i~~~~ls----~~~g~~~l~~--------~~~l~~~~----------------------G~riGLvG~NGaGKSTLLki 48 (530)
T COG0488 3 MITLENLS----LAYGDRPLLE--------NVSLTLNP----------------------GERIGLVGRNGAGKSTLLKI 48 (530)
T ss_pred eEEEeeeE----EeeCCceeec--------CCcceeCC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 45566777 8999998866 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEE-EEEeccc----------cC-CC
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSV-AIHFAQI----------ID-KP 221 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV-~~~~~~~----------~~-~~ 221 (388)
|+ |.. .+.+|.+.+.. ..+++++.|++...+..++.++ ...+..+ +. ..
T Consensus 49 la----G~~-~~~~G~i~~~~--------------~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~ 109 (530)
T COG0488 49 LA----GEL-EPDSGEVTRPK--------------GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109 (530)
T ss_pred Hc----CCC-cCCCCeEeecC--------------CceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcc
Confidence 99 988 77799854321 1248999998877655443321 1111100 00 00
Q ss_pred C----------------ccccccCCceEEEEEEeeeC-CCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhh
Q psy14062 222 N----------------EEYEIIPGTDLEIARTAFYD-NSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAK 284 (388)
Q Consensus 222 ~----------------~~~~~~~~~~l~~~r~~~~~-~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~ 284 (388)
. +.+.........+.++.... .++...||||++.|+.+|++|.. +|++|||||||+.
T Consensus 110 ~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~------~pDlLLLDEPTNH 183 (530)
T COG0488 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLE------EPDLLLLDEPTNH 183 (530)
T ss_pred cchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhc------CCCEEEEcCCCcc
Confidence 0 00000000000011111111 57889999999999999999999 9999999999999
Q ss_pred H-HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 285 M-EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 285 L-e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
| -+-+..|.+.-.....++++||||...+...|+++.+
T Consensus 184 LD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ 222 (530)
T COG0488 184 LDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILE 222 (530)
T ss_pred cCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEE
Confidence 9 4444444443333222699999999999999998644
No 292
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=2.1e-25 Score=205.85 Aligned_cols=186 Identities=19% Similarity=0.177 Sum_probs=130.0
Q ss_pred cccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhh
Q psy14062 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFV 179 (388)
Q Consensus 100 ~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~v 179 (388)
.|++||||+|++ |++++++|||||||||+|++++ |++ .+.||++.+.|-+-|.
T Consensus 38 ~AVqdisf~IP~----------------------G~ivgflGaNGAGKSTtLKmLT----Gll-~p~~G~v~V~G~~Pf~ 90 (325)
T COG4586 38 EAVQDISFEIPK----------------------GEIVGFLGANGAGKSTTLKMLT----GLL-LPTSGKVRVNGKDPFR 90 (325)
T ss_pred hhhheeeeecCC----------------------CcEEEEEcCCCCcchhhHHHHh----Ccc-ccCCCeEEecCcCcch
Confidence 478899999999 9999999999999999999999 999 6679998777654432
Q ss_pred cCccchhhhhccceeEec-ccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHH
Q psy14062 180 FGYRASKIRANKLSVLMH-KSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKE 258 (388)
Q Consensus 180 lg~~~~~lr~~~i~~l~q-~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~ 258 (388)
. .+.--+.+++++- ...+.......+-......+++-++..+...-....++..+.....++...||-||+.|.+
T Consensus 91 ~----~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmrae 166 (325)
T COG4586 91 R----REEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAE 166 (325)
T ss_pred h----HHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHH
Confidence 1 1111123555543 2222111110000000111233333333221112233334443456789999999999999
Q ss_pred HHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 259 VAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 259 Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
+|.+|.+ +|++|+|||||-+| +.|.+.+++..++..+||++.||+++.++.+|+++.-
T Consensus 167 LaaaLLh------~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~ 229 (325)
T COG4586 167 LAAALLH------PPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLL 229 (325)
T ss_pred HHHHhcC------CCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEE
Confidence 9999999 99999999999999 7788889988888777899999999999999998743
No 293
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.5e-24 Score=229.77 Aligned_cols=197 Identities=14% Similarity=0.105 Sum_probs=121.2
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+|+ ++|+++.+|. ||||+|.+ |++++|+|||||||||||++|
T Consensus 2 i~i~nls----~~~g~~~~l~--------~vs~~i~~----------------------Ge~v~LvG~NGsGKSTLLkiL 47 (638)
T PRK10636 2 IVFSSLQ----IRRGVRVLLD--------NATATINP----------------------GQKVGLVGKNGCGKSTLLALL 47 (638)
T ss_pred EEEEEEE----EEeCCceeec--------CcEEEECC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 5667777 8999887765 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhh-hcCccchhhhhccceeEecccCCCCCcceE----E---EEEEecccc---CC-CC
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLF-VFGYRASKIRANKLSVLMHKSDQVGGVSRC----S---VAIHFAQII---DK-PN 222 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~-vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~----e---V~~~~~~~~---~~-~~ 222 (388)
+ |++ ++.+|++.+.+.... .+...........++++++....+..++.. + ....+..+. .. ..
T Consensus 48 ~----G~~-~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (638)
T PRK10636 48 K----NEI-SADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDA 122 (638)
T ss_pred h----CCC-CCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Confidence 9 988 778999877553210 000000000112234444322111100000 0 000000000 00 00
Q ss_pred ccccccCCceEEEEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHH
Q psy14062 223 EEYEIIPGTDLEIARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEER 296 (388)
Q Consensus 223 ~~~~~~~~~~l~~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~ 296 (388)
..........+...++. ...++++..|||||+||+.||++|+. +|++|||||||++| +.+...+.++
T Consensus 123 ~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~------~P~lLLLDEPtn~LD~~~~~~L~~~L~~~- 195 (638)
T PRK10636 123 WTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALIC------RSDLLLLDEPTNHLDLDAVIWLEKWLKSY- 195 (638)
T ss_pred cchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHcc------CCCEEEEcCCCCcCCHHHHHHHHHHHHhC-
Confidence 00000000112222222 23366889999999999999999999 99999999999999 3333344332
Q ss_pred HHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 297 TEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 297 ~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
+. +|++||||+..+.+.|+++
T Consensus 196 --~~-tviivsHd~~~l~~~~d~i 216 (638)
T PRK10636 196 --QG-TLILISHDRDFLDPIVDKI 216 (638)
T ss_pred --CC-eEEEEeCCHHHHHHhcCEE
Confidence 33 5999999999999998865
No 294
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.89 E-value=1e-24 Score=229.51 Aligned_cols=192 Identities=17% Similarity=0.233 Sum_probs=128.5
Q ss_pred EeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccE
Q psy14062 81 VAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNA 160 (388)
Q Consensus 81 ~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ng 160 (388)
++.+|.+|+++.+|+ |+||+|++ |+++||+||||||||||+++|+ |
T Consensus 353 ~~vsf~~~~~~~vL~--------~i~l~i~~----------------------G~~vaIvG~SGsGKSTL~~lL~----g 398 (588)
T PRK11174 353 EDLEILSPDGKTLAG--------PLNFTLPA----------------------GQRIALVGPSGAGKTSLLNALL----G 398 (588)
T ss_pred EeeEEeccCCCeeee--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh----c
Confidence 333355555555654 99999999 9999999999999999999999 9
Q ss_pred EEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccc-cCC----ceEEE
Q psy14062 161 IIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEI-IPG----TDLEI 235 (388)
Q Consensus 161 IiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~-~~~----~~l~~ 235 (388)
+. |. +|++.++|.++.- .+...+| +.+++++|++..|... ..++...... +..+++... ... ..+.-
T Consensus 399 ~~-p~-~G~I~i~g~~i~~--~~~~~lr-~~i~~v~Q~~~LF~~T-I~eNI~~g~~--~~~~eei~~al~~a~l~~~i~~ 470 (588)
T PRK11174 399 FL-PY-QGSLKINGIELRE--LDPESWR-KHLSWVGQNPQLPHGT-LRDNVLLGNP--DASDEQLQQALENAWVSEFLPL 470 (588)
T ss_pred CC-CC-CcEEEECCEeccc--CCHHHHH-hheEEecCCCcCCCcC-HHHHhhcCCC--CCCHHHHHHHHHHhCHHHHHHh
Confidence 98 75 8999988865532 2233344 5699999999988763 3333322211 111111100 000 00000
Q ss_pred E--EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 236 A--RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 236 ~--r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH 308 (388)
. +....-+.....|||||+||++|||+|.. +|+++|||||||+| +.+.+.+.++.+ +. |++++||
T Consensus 471 lp~G~dT~vge~G~~LSGGQrQRialARAll~------~~~IliLDE~TSaLD~~te~~i~~~l~~~~~-~~-TvIiItH 542 (588)
T PRK11174 471 LPQGLDTPIGDQAAGLSVGQAQRLALARALLQ------PCQLLLLDEPTASLDAHSEQLVMQALNAASR-RQ-TTLMVTH 542 (588)
T ss_pred cccccccccccCCCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCccCCCHHHHHHHHHHHHHHhC-CC-EEEEEec
Confidence 0 11111234456799999999999999999 99999999999999 445555555543 23 5999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy14062 309 DLKALEPELRKAVNF 323 (388)
Q Consensus 309 ~l~~l~~~~d~~~~y 323 (388)
+++.+.. +|++...
T Consensus 543 rl~~i~~-aD~Iivl 556 (588)
T PRK11174 543 QLEDLAQ-WDQIWVM 556 (588)
T ss_pred ChHHHHh-CCEEEEE
Confidence 9977654 7765433
No 295
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.88 E-value=1.7e-25 Score=218.79 Aligned_cols=167 Identities=12% Similarity=0.152 Sum_probs=120.2
Q ss_pred EEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEecccc
Q psy14062 139 IIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQII 218 (388)
Q Consensus 139 iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~ 218 (388)
|+|||||||||||++|+ |+. ++.+|++.++|..+.- .. . ..+.++|+||++..++.+++.++..+.....
T Consensus 1 l~G~nGsGKSTLl~~ia----Gl~-~p~~G~I~i~g~~i~~--~~--~-~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 70 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLA----GFE-QPDSGSIMLDGEDVTN--VP--P-HLRHINMVFQSYALFPHMTVEENVAFGLKMR 70 (325)
T ss_pred CcCCCCCCHHHHHHHHH----CCC-CCCceEEEECCEECCC--CC--H-HHCCEEEEecCccccCCCcHHHHHHHHHhhc
Confidence 68999999999999999 998 7889998887765421 11 1 2356999999988888777765432211111
Q ss_pred CCCCcc-ccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhh
Q psy14062 219 DKPNEE-YEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKY 292 (388)
Q Consensus 219 ~~~~~~-~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l 292 (388)
+..... ...+ ...+...++....++.+..|||||+||++||++|+. +|+++|||||+++| +.+...+
T Consensus 71 ~~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~------~p~lllLDEP~s~LD~~~~~~l~~~l 143 (325)
T TIGR01187 71 KVPRAEIKPRV-LEALRLVQLEEFADRKPHQLSGGQQQRVALARALVF------KPKILLLDEPLSALDKKLRDQMQLEL 143 (325)
T ss_pred CCCHHHHHHHH-HHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHh------CCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 111110 0011 112223333344567889999999999999999999 99999999999999 6677788
Q ss_pred HHHHHHhhhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 293 DEERTEKLTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 293 ~el~~e~~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
.++.++...+++++||+++++...+|++.-
T Consensus 144 ~~l~~~~g~tiiivTHd~~e~~~~~d~i~v 173 (325)
T TIGR01187 144 KTIQEQLGITFVFVTHDQEEAMTMSDRIAI 173 (325)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 777765334599999999999999987643
No 296
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.88 E-value=7.8e-25 Score=232.41 Aligned_cols=200 Identities=17% Similarity=0.187 Sum_probs=140.0
Q ss_pred cEEEEEEEeeceEEecC----ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhh
Q psy14062 74 RLIITKIVAFNFKSYAG----YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSN 149 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~----~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKST 149 (388)
++.+.+++ ++|++ ..++ +++||++.+ |++++|+|||||||||
T Consensus 4 ~l~~~nl~----~~y~~~~~~~~il--------~~vs~~i~~----------------------Ge~~~l~G~nGsGKST 49 (648)
T PRK10535 4 LLELKDIR----RSYPSGEEQVEVL--------KGISLDIYA----------------------GEMVAIVGASGSGKST 49 (648)
T ss_pred EEEEeeEE----EEeCCCCCCeeee--------eeeEEEEcC----------------------CCEEEEECCCCCCHHH
Confidence 56667776 77853 2344 499999999 9999999999999999
Q ss_pred HHhhhhhcccEEEcCCCCCcceeehhhhhhcCccc-hhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccccc
Q psy14062 150 VIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRA-SKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEII 228 (388)
Q Consensus 150 Ll~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~-~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~ 228 (388)
|+++|+ |+. ++.+|++.++|..+.-..... ..++.+.++++||++..++..+..++........+.........
T Consensus 50 Ll~~i~----Gl~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 124 (648)
T PRK10535 50 LMNILG----CLD-KPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLR 124 (648)
T ss_pred HHHHHh----cCC-CCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 999999 998 788999888775443222111 12345679999999988776664432211100001110100000
Q ss_pred CCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHH
Q psy14062 229 PGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRV 303 (388)
Q Consensus 229 ~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~i 303 (388)
....+...++..+.+..+..||+||+||+.+|++|+. +|+++|+|||+++| +.+.+.+.++++++. ++
T Consensus 125 ~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~------~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~-ti 197 (648)
T PRK10535 125 AQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN------GGQVILADEPTGALDSHSGEEVMAILHQLRDRGH-TV 197 (648)
T ss_pred HHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhc------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCC-EE
Confidence 0112222233344567788999999999999999999 99999999999999 777778887765554 59
Q ss_pred HHHHHhHHHHHHHHHHH
Q psy14062 304 QLVETDLKALEPELRKA 320 (388)
Q Consensus 304 i~vtH~l~~l~~~~d~~ 320 (388)
+++||+++.++ .||++
T Consensus 198 livsH~~~~~~-~~d~i 213 (648)
T PRK10535 198 IIVTHDPQVAA-QAERV 213 (648)
T ss_pred EEECCCHHHHH-hCCEE
Confidence 99999999875 57765
No 297
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.88 E-value=1.4e-24 Score=225.71 Aligned_cols=182 Identities=19% Similarity=0.251 Sum_probs=121.6
Q ss_pred EEEEEEEeeceEEecC-ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 75 LIITKIVAFNFKSYAG-YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 75 l~i~~l~~~~fksy~~-~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
+.+++++ .+|.+ +.+ |+|+||+|++ |+.++|+||||||||||+++
T Consensus 335 I~~~~vs----f~Y~~~~~v--------L~~isl~i~~----------------------G~~vaIvG~SGsGKSTLl~l 380 (529)
T TIGR02868 335 LELRDLS----FGYPGSPPV--------LDGVSLDLPP----------------------GERVAILGPSGSGKSTLLML 380 (529)
T ss_pred EEEEEEE----EecCCCCce--------eecceEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 5555555 45865 334 4599999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccc-ccCC--
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYE-IIPG-- 230 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~-~~~~-- 230 (388)
|+ |+. ++.+|++.++|.++.-. ...+| +.+++|+|++..|++.-..++.+.. . +..+++.. ....
T Consensus 381 L~----g~~-~p~~G~I~i~g~~i~~~---~~~lr-~~i~~V~Q~~~lF~~TI~eNI~~g~-~--~~~~e~i~~al~~a~ 448 (529)
T TIGR02868 381 LT----GLL-DPLQGEVTLDGVSVSSL---QDELR-RRISVFAQDAHLFDTTVRDNLRLGR-P--DATDEELWAALERVG 448 (529)
T ss_pred Hh----cCC-CCCCcEEEECCEEhhhH---HHHHH-hheEEEccCcccccccHHHHHhccC-C--CCCHHHHHHHHHHcC
Confidence 99 998 77899999988766532 23344 5699999999988663333333321 1 00111100 0000
Q ss_pred --ceEE-E-EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhh
Q psy14062 231 --TDLE-I-ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLT 301 (388)
Q Consensus 231 --~~l~-~-~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~ 301 (388)
..+. + .+....-+.....|||||+||++|||+|.. +|+++|||||||+| ..+.+.+.++.+ +.
T Consensus 449 l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~------~~~iliLDE~TSaLD~~te~~I~~~l~~~~~-~~- 520 (529)
T TIGR02868 449 LADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA------DAPILLLDEPTEHLDAGTESELLEDLLAALS-GK- 520 (529)
T ss_pred CHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CC-
Confidence 0000 0 011111234556799999999999999999 99999999999999 344444444322 23
Q ss_pred HHHHHHHhH
Q psy14062 302 RVQLVETDL 310 (388)
Q Consensus 302 ~ii~vtH~l 310 (388)
|+++++|++
T Consensus 521 TvIiItHrl 529 (529)
T TIGR02868 521 TVVVITHHL 529 (529)
T ss_pred EEEEEecCC
Confidence 589999963
No 298
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.88 E-value=4.8e-25 Score=204.57 Aligned_cols=169 Identities=18% Similarity=0.282 Sum_probs=117.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCC--cceEEEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGG--VSRCSVA 211 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~--~~~~eV~ 211 (388)
|++++|+||||||||||+++|+ |+. ++.+|++.++|..+ ...+ +.++|++|++..++. .+..++.
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~----G~~-~~~~G~i~~~g~~~-------~~~~-~~i~~v~q~~~~~~~~~~tv~~~l 72 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAIL----GLI-PPAKGTVKVAGASP-------GKGW-RHIGYVPQRHEFAWDFPISVAHTV 72 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHh----CCC-CCCCceEEECCccc-------hHhh-CcEEEecccccccCCCCccHHHHH
Confidence 9999999999999999999999 998 77899988776542 1222 469999998765322 2322211
Q ss_pred EEe-c---cccCCCC-ccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-
Q psy14062 212 IHF-A---QIIDKPN-EEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM- 285 (388)
Q Consensus 212 ~~~-~---~~~~~~~-~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L- 285 (388)
... . ....... .....+. ..+...+.....+..+..|||||+||+.||++|+. +|+++|+|||+++|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------~p~llilDEP~~~LD 145 (223)
T TIGR03771 73 MSGRTGHIGWLRRPCVADFAAVR-DALRRVGLTELADRPVGELSGGQRQRVLVARALAT------RPSVLLLDEPFTGLD 145 (223)
T ss_pred HhccccccccccCCcHHHHHHHH-HHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCC
Confidence 100 0 0000000 0000010 11222222233456788999999999999999999 99999999999999
Q ss_pred ----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 286 ----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 286 ----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+.+...+.++++++. +++++||+++.+.+.+|++..+
T Consensus 146 ~~~~~~l~~~l~~~~~~~~-tvii~sH~~~~~~~~~d~i~~l 186 (223)
T TIGR03771 146 MPTQELLTELFIELAGAGT-AILMTTHDLAQAMATCDRVVLL 186 (223)
T ss_pred HHHHHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHhCCEEEEE
Confidence 777778877765544 5999999999999999987543
No 299
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.6e-23 Score=183.78 Aligned_cols=139 Identities=23% Similarity=0.312 Sum_probs=107.8
Q ss_pred EEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC
Q psy14062 86 KSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN 165 (388)
Q Consensus 86 ksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn 165 (388)
++|.+..++. ++||+|.+ |++++|+||||||||||+++|+ |++ ++
T Consensus 7 ~~~~~~~~l~--------~~~~~i~~----------------------g~~~~i~G~nGsGKStll~~l~----g~~-~~ 51 (157)
T cd00267 7 FRYGGRTALD--------NVSLTLKA----------------------GEIVALVGPNGSGKSTLLRAIA----GLL-KP 51 (157)
T ss_pred EEeCCeeeEe--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh----CCC-CC
Confidence 4577666554 99999999 9999999999999999999999 988 67
Q ss_pred CCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCC
Q psy14062 166 GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSS 245 (388)
Q Consensus 166 gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~ 245 (388)
.+|++.+.+..+.. .....+...+++++|
T Consensus 52 ~~G~i~~~~~~~~~---~~~~~~~~~i~~~~q------------------------------------------------ 80 (157)
T cd00267 52 TSGEILIDGKDIAK---LPLEELRRRIGYVPQ------------------------------------------------ 80 (157)
T ss_pred CccEEEECCEEccc---CCHHHHHhceEEEee------------------------------------------------
Confidence 79997766532210 001111233555544
Q ss_pred eeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 246 YYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 246 ~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
||+||+||+.++++++. .|+++|+|||+++| ..+...+.+.+..+ .+++++||+++.+...+|++
T Consensus 81 ---lS~G~~~r~~l~~~l~~------~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~-~tii~~sh~~~~~~~~~d~i 150 (157)
T cd00267 81 ---LSGGQRQRVALARALLL------NPDLLLLDEPTSGLDPASRERLLELLRELAEEG-RTVIIVTHDPELAELAADRV 150 (157)
T ss_pred ---CCHHHHHHHHHHHHHhc------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHhCCEE
Confidence 99999999999999999 99999999999999 55666776665543 35999999999998877654
No 300
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.1e-24 Score=215.17 Aligned_cols=189 Identities=18% Similarity=0.261 Sum_probs=132.8
Q ss_pred EEEeeceEEecCc-eeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhc
Q psy14062 79 KIVAFNFKSYAGY-VTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 79 ~l~~~~fksy~~~-~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
+++ ..|.+. +++. |+||++++ |+.+||+|+||||||||+++|+
T Consensus 325 ~l~----~~y~~g~~~l~--------~l~~t~~~----------------------g~~talvG~SGaGKSTLl~lL~-- 368 (559)
T COG4988 325 NLS----FRYPDGKPALS--------DLNLTIKA----------------------GQLTALVGASGAGKSTLLNLLL-- 368 (559)
T ss_pred ceE----EecCCCCcccC--------CceeEecC----------------------CcEEEEECCCCCCHHHHHHHHh--
Confidence 555 568654 5544 99999999 9999999999999999999999
Q ss_pred ccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCC-ceEEE
Q psy14062 158 FNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPG-TDLEI 235 (388)
Q Consensus 158 ~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~-~~l~~ 235 (388)
|+. ++.+|++.++|..+.-+. .... ++++++|.|+|..+++....++.+.- . +.+++. .+.... ...++
T Consensus 369 --G~~-~~~~G~I~vng~~l~~l~--~~~~-~k~i~~v~Q~p~lf~gTireNi~l~~-~--~~s~e~i~~al~~a~l~~~ 439 (559)
T COG4988 369 --GFL-APTQGEIRVNGIDLRDLS--PEAW-RKQISWVSQNPYLFAGTIRENILLAR-P--DASDEEIIAALDQAGLLEF 439 (559)
T ss_pred --CcC-CCCCceEEECCccccccC--HHHH-HhHeeeeCCCCccccccHHHHhhccC-C--cCCHHHHHHHHHHhcHHHh
Confidence 999 778999999887654322 2223 35699999999998765554444321 1 111110 000000 01111
Q ss_pred E----EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHH
Q psy14062 236 A----RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLV 306 (388)
Q Consensus 236 ~----r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~v 306 (388)
. ++...-+.....|||||.||+.+||+|.. +++++|+||||++| +.|.+.+.++.++. +++++
T Consensus 440 v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~------~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~k--tvl~i 511 (559)
T COG4988 440 VPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS------PASLLLLDEPTAHLDAETEQIILQALQELAKQK--TVLVI 511 (559)
T ss_pred hcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC------CCCEEEecCCccCCCHhHHHHHHHHHHHHHhCC--eEEEE
Confidence 1 11222345667899999999999999999 89999999999999 45566777776663 69999
Q ss_pred HHhHHHHHHHHHHHH
Q psy14062 307 ETDLKALEPELRKAV 321 (388)
Q Consensus 307 tH~l~~l~~~~d~~~ 321 (388)
||++..+.. +|++.
T Consensus 512 tHrl~~~~~-~D~I~ 525 (559)
T COG4988 512 THRLEDAAD-ADRIV 525 (559)
T ss_pred EcChHHHhc-CCEEE
Confidence 999987765 34443
No 301
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.88 E-value=4.1e-25 Score=203.71 Aligned_cols=167 Identities=10% Similarity=0.042 Sum_probs=111.7
Q ss_pred ccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcce-eehhhhhh
Q psy14062 101 EVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSN-VIDSMLFV 179 (388)
Q Consensus 101 ~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~-i~da~i~v 179 (388)
+|+||||+|++ |++++|+||||||||||+++|+ |++ ++.+|++. +.+..+
T Consensus 2 vl~~vs~~i~~----------------------Ge~~~l~G~NGsGKSTLlk~i~----Gl~-~~~sG~i~~~~~~~~-- 52 (213)
T PRK15177 2 VLDKTDFVMGY----------------------HEHIGILAAPGSGKTTLTRLLC----GLD-APDEGDFIGLRGDAL-- 52 (213)
T ss_pred eeeeeeEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh----CCc-cCCCCCEEEecCcee--
Confidence 46799999999 9999999999999999999999 998 78899975 332211
Q ss_pred cCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHH
Q psy14062 180 FGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEV 259 (388)
Q Consensus 180 lg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~I 259 (388)
.+ .+.+..++.++..++...+...++....... ........+....+..+..||+||+||+.+
T Consensus 53 -----------~~---~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~lS~G~~qrv~l 115 (213)
T PRK15177 53 -----------PL---GANSFILPGLTGEENARMMASLYGLDGDEFS---HFCYQLTQLEQCYTDRVSEYSVTMKTHLAF 115 (213)
T ss_pred -----------cc---ccccccCCcCcHHHHHHHHHHHcCCCHHHHH---HHHHHHhChhHHhhchHhhcCHHHHHHHHH
Confidence 01 1223344445544433222221221111100 000011122223456778899999999999
Q ss_pred HHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHH
Q psy14062 260 AKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 260 a~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
|++|+. +|+++|+|||++++ ..+...+.+..+. . +++++||++..+...||++.
T Consensus 116 a~al~~------~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~-~-~ii~vsH~~~~~~~~~d~i~ 174 (213)
T PRK15177 116 AINLLL------PCRLYIADGKLYTGDNATQLRMQAALACQLQQ-K-GLIVLTHNPRLIKEHCHAFG 174 (213)
T ss_pred HHHHhc------CCCEEEECCCCccCCHHHHHHHHHHHHHHhhC-C-cEEEEECCHHHHHHhcCeeE
Confidence 999999 99999999999988 3344444332222 2 48899999999999998763
No 302
>KOG0058|consensus
Probab=99.88 E-value=7.7e-24 Score=217.82 Aligned_cols=190 Identities=19% Similarity=0.229 Sum_probs=131.6
Q ss_pred EEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhccc
Q psy14062 80 IVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFN 159 (388)
Q Consensus 80 l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~n 159 (388)
++++.| +|..+.-. .+|+|+||+|++ |+++|||||||+||||+..++.
T Consensus 468 F~~VsF-aYP~Rp~~-----~Vlk~lsfti~p----------------------Ge~vALVGPSGsGKSTiasLL~---- 515 (716)
T KOG0058|consen 468 FEDVSF-AYPTRPDV-----PVLKNLSFTIRP----------------------GEVVALVGPSGSGKSTIASLLL---- 515 (716)
T ss_pred EEEeee-ecCCCCCc-----hhhcCceeeeCC----------------------CCEEEEECCCCCCHHHHHHHHH----
Confidence 444445 59776432 246699999999 9999999999999999999999
Q ss_pred EEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccc----cC-CceEE
Q psy14062 160 AIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEI----IP-GTDLE 234 (388)
Q Consensus 160 gIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~----~~-~~~l~ 234 (388)
-++ .|.||++.++|.++.-. +...+| ++|+.|-|+|.+|......++.+.... ...++... .. .+-+.
T Consensus 516 rfY-~PtsG~IllDG~~i~~~--~~~~lr-~~Ig~V~QEPvLFs~sI~eNI~YG~~~---~t~e~i~~AAk~ANah~FI~ 588 (716)
T KOG0058|consen 516 RFY-DPTSGRILLDGVPISDI--NHKYLR-RKIGLVGQEPVLFSGSIRENIAYGLDN---ATDEEIEAAAKMANAHEFIT 588 (716)
T ss_pred Hhc-CCCCCeEEECCeehhhc--CHHHHH-HHeeeeeccceeecccHHHHHhcCCCC---CCHHHHHHHHHHhChHHHHH
Confidence 677 66799999998877533 344566 669999999999876555555544321 11111000 00 00000
Q ss_pred EEEEe--eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH----HHH-HhhhHHHHHHhhhHHHHHH
Q psy14062 235 IARTA--FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM----EVL-YGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 235 ~~r~~--~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L----e~i-~~~l~el~~e~~~~ii~vt 307 (388)
-.-.. ..-+.....|||||+||.+|||||.. +|++|||||.||+| |.+ -+.+.+..++ . |++++.
T Consensus 589 ~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr------~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-r-TVlvIA 660 (716)
T KOG0058|consen 589 NFPDGYNTVVGEKGSQLSGGQKQRIAIARALLR------NPRVLILDEATSALDAESEYLVQEALDRLMQG-R-TVLVIA 660 (716)
T ss_pred hCccccccccCCccccccchHHHHHHHHHHHhc------CCCEEEEechhhhcchhhHHHHHHHHHHhhcC-C-eEEEEe
Confidence 00001 11256677999999999999999999 99999999999999 333 3344444444 3 599999
Q ss_pred HhHHHHHHH
Q psy14062 308 TDLKALEPE 316 (388)
Q Consensus 308 H~l~~l~~~ 316 (388)
|.+..+++.
T Consensus 661 HRLSTV~~A 669 (716)
T KOG0058|consen 661 HRLSTVRHA 669 (716)
T ss_pred hhhhHhhhc
Confidence 999888753
No 303
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.88 E-value=6.2e-25 Score=207.78 Aligned_cols=186 Identities=18% Similarity=0.179 Sum_probs=122.5
Q ss_pred EEecCce-eecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcC
Q psy14062 86 KSYAGYV-TLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGP 164 (388)
Q Consensus 86 ksy~~~~-~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGp 164 (388)
++|++.. + |+|+|+ +.+ |++++|+|||||||||||++|+ |++ +
T Consensus 8 ~~y~~~~~~--------l~~i~~-i~~----------------------Ge~~~IvG~nGsGKSTLlk~l~----Gl~-~ 51 (255)
T cd03236 8 HRYGPNSFK--------LHRLPV-PRE----------------------GQVLGLVGPNGIGKSTALKILA----GKL-K 51 (255)
T ss_pred eeecCcchh--------hhcCCC-CCC----------------------CCEEEEECCCCCCHHHHHHHHh----CCc-C
Confidence 6787543 4 459994 899 9999999999999999999999 998 7
Q ss_pred CCCCcceeehhh----hhhcCccch----hhhh--ccceeEecccCCCCCcceEE-EEEEeccccCCCCccccccCCceE
Q psy14062 165 NGSGKSNVIDSM----LFVFGYRAS----KIRA--NKLSVLMHKSDQVGGVSRCS-VAIHFAQIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 165 ngSGKs~i~da~----i~vlg~~~~----~lr~--~~i~~l~q~~~~~~~~~~~e-V~~~~~~~~~~~~~~~~~~~~~~l 233 (388)
+.+|++.+.+.. .++.|.... ..++ ..+++++|....++. +... +.. .+ ..... .... ...+
T Consensus 52 p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~---~l-~~~~~-~~~~-~~~l 124 (255)
T cd03236 52 PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGE---LL-KKKDE-RGKL-DELV 124 (255)
T ss_pred CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCch-HHHHHHHH---Hh-chhHH-HHHH-HHHH
Confidence 889997521110 012232221 1121 135777776555442 1111 100 00 00000 0000 0111
Q ss_pred EEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 234 ~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH 308 (388)
...++....+..+..||+||+||+.+|++|+. +|+++|+|||+++| ..+...+.++++++. +++++||
T Consensus 125 ~~~gl~~~~~~~~~~LS~G~~qrv~laral~~------~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~-tIIiiSH 197 (255)
T cd03236 125 DQLELRHVLDRNIDQLSGGELQRVAIAAALAR------DADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN-YVLVVEH 197 (255)
T ss_pred HHcCCchhhcCChhhCCHHHHHHHHHHHHHHh------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCC-EEEEEEC
Confidence 12222223456788999999999999999999 99999999999999 557778887776554 5999999
Q ss_pred hHHHHHHHHHHHH
Q psy14062 309 DLKALEPELRKAV 321 (388)
Q Consensus 309 ~l~~l~~~~d~~~ 321 (388)
+++.+...||++.
T Consensus 198 d~~~~~~~ad~i~ 210 (255)
T cd03236 198 DLAVLDYLSDYIH 210 (255)
T ss_pred CHHHHHHhCCEEE
Confidence 9999999888753
No 304
>PLN03211 ABC transporter G-25; Provisional
Probab=99.88 E-value=9.8e-25 Score=231.26 Aligned_cols=186 Identities=15% Similarity=0.129 Sum_probs=131.6
Q ss_pred EEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC
Q psy14062 86 KSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN 165 (388)
Q Consensus 86 ksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn 165 (388)
++|+++.+|+ |||+++.+ |++++|+|||||||||||++|+ |...|.
T Consensus 76 ~~~~~~~iL~--------~vs~~i~~----------------------Ge~~aI~GpnGaGKSTLL~iLa----G~~~~~ 121 (659)
T PLN03211 76 RQIQERTILN--------GVTGMASP----------------------GEILAVLGPSGSGKSTLLNALA----GRIQGN 121 (659)
T ss_pred ccCCCCeeee--------CCEEEEEC----------------------CEEEEEECCCCCCHHHHHHHHh----CCCCCC
Confidence 6787777755 99999999 9999999999999999999999 887332
Q ss_pred -CCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEecccc-CC--CCccc-cccCCceEEEEEEee
Q psy14062 166 -GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQII-DK--PNEEY-EIIPGTDLEIARTAF 240 (388)
Q Consensus 166 -gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~-~~--~~~~~-~~~~~~~l~~~r~~~ 240 (388)
.+|++.++|..+. ...+ +.+++++|++..++..++.+...+..... .. ..... ..+. ..+...++..
T Consensus 122 ~~sG~I~inG~~~~------~~~~-~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~-~~l~~lgL~~ 193 (659)
T PLN03211 122 NFTGTILANNRKPT------KQIL-KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAE-SVISELGLTK 193 (659)
T ss_pred ceeEEEEECCEECc------hhhc-cceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHH-HHHHHcCChh
Confidence 3899877765431 1122 45999999988887777766443221111 00 00000 0011 1111112211
Q ss_pred e-----CCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhH
Q psy14062 241 Y-----DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDL 310 (388)
Q Consensus 241 ~-----~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l 310 (388)
. .+.....|||||+||+.||++|.. +|++++|||||++| ..+...++++.+++. ++++++|++
T Consensus 194 ~~~t~vg~~~~~~LSgGerqRv~ia~aL~~------~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~-TvI~~sH~~ 266 (659)
T PLN03211 194 CENTIIGNSFIRGISGGERKRVSIAHEMLI------NPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGK-TIVTSMHQP 266 (659)
T ss_pred hcCceeCCCCCCCcChhhhhHHHHHHHHHh------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCC-EEEEEecCC
Confidence 1 234567899999999999999999 99999999999999 777888888876655 599999998
Q ss_pred H-HHHHHHHHH
Q psy14062 311 K-ALEPELRKA 320 (388)
Q Consensus 311 ~-~l~~~~d~~ 320 (388)
. .+.+.+|++
T Consensus 267 ~~~i~~~~D~i 277 (659)
T PLN03211 267 SSRVYQMFDSV 277 (659)
T ss_pred CHHHHHhhceE
Confidence 7 577777754
No 305
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.88 E-value=1e-23 Score=223.06 Aligned_cols=194 Identities=18% Similarity=0.241 Sum_probs=130.3
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+++++ | .|+... ...|+|+||+|++ |+++||+|+||||||||+|++
T Consensus 472 I~~~nvs---f-~y~~~~------~~vL~~isL~I~~----------------------Ge~vaIvG~SGsGKSTL~KLL 519 (709)
T COG2274 472 IEFENVS---F-RYGPDD------PPVLEDLSLEIPP----------------------GEKVAIVGRSGSGKSTLLKLL 519 (709)
T ss_pred EEEEEEE---E-EeCCCC------cchhhceeEEeCC----------------------CCEEEEECCCCCCHHHHHHHH
Confidence 4455555 4 587542 1236699999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccc--cCC-
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEI--IPG- 230 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~--~~~- 230 (388)
. |+. .+.+|.+.++|.++.-. +...+| +.|++|.|++.+|.+....++.+.-. +...+. ... ...
T Consensus 520 ~----gly-~p~~G~I~~dg~dl~~i--~~~~lR-~~ig~V~Q~~~Lf~gSI~eNi~l~~p---~~~~e~i~~A~~~ag~ 588 (709)
T COG2274 520 L----GLY-KPQQGRILLDGVDLNDI--DLASLR-RQVGYVLQDPFLFSGSIRENIALGNP---EATDEEIIEAAQLAGA 588 (709)
T ss_pred h----cCC-CCCCceEEECCEeHHhc--CHHHHH-hheeEEcccchhhcCcHHHHHhcCCC---CCCHHHHHHHHHHhCc
Confidence 9 998 77799999998776533 334455 56999999998876654433332210 000000 000 000
Q ss_pred -ceEEE--EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhH
Q psy14062 231 -TDLEI--ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTR 302 (388)
Q Consensus 231 -~~l~~--~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ 302 (388)
..+.- .+....-+.....|||||+||+.|||+|.. +|++||||||||+| ..|.+.+.+.... . |
T Consensus 589 ~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~------~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~-~-T 660 (709)
T COG2274 589 HEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS------KPKILLLDEATSALDPETEAIILQNLLQILQG-R-T 660 (709)
T ss_pred HHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc------CCCEEEEeCcccccCHhHHHHHHHHHHHHhcC-C-e
Confidence 00000 011111245567899999999999999999 99999999999999 4445555555433 3 6
Q ss_pred HHHHHHhHHHHHHHHHHH
Q psy14062 303 VQLVETDLKALEPELRKA 320 (388)
Q Consensus 303 ii~vtH~l~~l~~~~d~~ 320 (388)
+++++|++..++. ||++
T Consensus 661 ~I~IaHRl~ti~~-adrI 677 (709)
T COG2274 661 VIIIAHRLSTIRS-ADRI 677 (709)
T ss_pred EEEEEccchHhhh-ccEE
Confidence 9999999887664 4443
No 306
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.88 E-value=4.6e-24 Score=206.02 Aligned_cols=206 Identities=17% Similarity=0.163 Sum_probs=145.9
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+.+.+.+++ ..|..... ...++++|||+|.. |+.+||||.||||||-...
T Consensus 5 ~lL~v~nLs----V~f~~~~~----~~~aVk~isf~i~~----------------------GEtlAlVGESGSGKSvTa~ 54 (534)
T COG4172 5 PLLSIRNLS----VAFHQEGG----TVEAVKGISFDIEA----------------------GETLALVGESGSGKSVTAL 54 (534)
T ss_pred cceeeeccE----EEEecCCc----ceEeeccceeeecC----------------------CCEEEEEecCCCCccHHHH
Confidence 567788887 55541100 01246799999999 9999999999999999999
Q ss_pred hhhhcccEEEcCC----CCCcceeehhhhhhcCcc-chhhhhccceeEecccCCCCCcceEEEEEEec-------ccc-C
Q psy14062 153 SMLFRFNAIIGPN----GSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFA-------QII-D 219 (388)
Q Consensus 153 ~i~~~~ngIiGpn----gSGKs~i~da~i~vlg~~-~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~-------~~~-~ 219 (388)
.|+ +++-.| .||++.+.|.++..+..+ ...+|+.+|+++||+|-. +.+-..... +++ +
T Consensus 55 sim----~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMt-----SLNPl~tIg~Qi~E~l~~Hrg 125 (534)
T COG4172 55 SIL----GLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMT-----SLNPLHTIGKQLAEVLRLHRG 125 (534)
T ss_pred HHH----HhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEeccccc-----ccCcHhHHHHHHHHHHHHHhc
Confidence 999 666221 478999999887765553 355788999999998642 221111110 111 1
Q ss_pred CCCccccccCCceEEEEE---EeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhh
Q psy14062 220 KPNEEYEIIPGTDLEIAR---TAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGK 291 (388)
Q Consensus 220 ~~~~~~~~~~~~~l~~~r---~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~ 291 (388)
..........-..+...+ ...+.+.+++.|||||+||+.||.||+. .|++||.||||.+| .+|.++
T Consensus 126 ~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan------~P~lLIADEPTTALDVtvQaQIL~L 199 (534)
T COG4172 126 LSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALAN------EPDLLIADEPTTALDVTVQAQILDL 199 (534)
T ss_pred ccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcC------CCCeEeecCCcchhhhhhHHHHHHH
Confidence 111111100001111111 1223467899999999999999999999 99999999999999 889999
Q ss_pred hHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 292 YDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 292 l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
++++.++....++++|||+..+.+++|++.-.
T Consensus 200 l~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM 231 (534)
T COG4172 200 LKELQAELGMAILFITHDLGIVRKFADRVYVM 231 (534)
T ss_pred HHHHHHHhCcEEEEEeccHHHHHHhhhhEEEE
Confidence 99999886666999999999999999987443
No 307
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.87 E-value=6.4e-24 Score=200.49 Aligned_cols=200 Identities=18% Similarity=0.189 Sum_probs=122.0
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
|.|..+.+.|||+|++..++.+|+ +.+++||||||||||||+++|
T Consensus 1 m~i~~~~~~~f~~~~~~~~~~~~~-----------------------------------~~~~~IvG~NGsGKStll~Ai 45 (251)
T cd03273 1 MHIKEIILDGFKSYATRTVISGFD-----------------------------------PQFNAITGLNGSGKSNILDAI 45 (251)
T ss_pred CEeeEEEEeCccccCcCEeeccCC-----------------------------------CCeEEEECCCCCCHHHHHHHH
Confidence 468899999999999887766676 889999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehh-hhhhcCccchhhhhccceeEecccCC---------CCCcceEEEEEEec-c-c-cCCC
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDS-MLFVFGYRASKIRANKLSVLMHKSDQ---------VGGVSRCSVAIHFA-Q-I-IDKP 221 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da-~i~vlg~~~~~lr~~~i~~l~q~~~~---------~~~~~~~eV~~~~~-~-~-~~~~ 221 (388)
+ +++|+...|...+.+. .+.-.+.. ...+...++++||++.. .+..++........ . . .+..
T Consensus 46 ~----~ll~~~~~~~~r~~~~~~li~~~~~-~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~ 120 (251)
T cd03273 46 C----FVLGITNLSTVRASNLQDLIYKRGQ-AGITKASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGH 120 (251)
T ss_pred H----HHhcccccccccccCHHHHhhcCCC-CCCcEEEEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCE
Confidence 9 8886653444444332 22111111 12345579999998632 22333332221100 0 0 0100
Q ss_pred CccccccCCceEEEEEEe--------------------eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccc
Q psy14062 222 NEEYEIIPGTDLEIARTA--------------------FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEP 281 (388)
Q Consensus 222 ~~~~~~~~~~~l~~~r~~--------------------~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP 281 (388)
......+. ..+...++. ...+..+..||+||+||+++|++|+.... ..|+++|+|||
T Consensus 121 ~~~~~~v~-~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~--~~~~illlDEP 197 (251)
T cd03273 121 RAQQQRVQ-DLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLF--KPAPMYILDEV 197 (251)
T ss_pred EeeHHHHH-HHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhc--cCCCEEEEeCC
Confidence 00000000 011111110 12245678999999999999999973110 16799999999
Q ss_pred hhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 282 IAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 282 ~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
+++| +.+...+.++.+ +. +++++||+. ++.+.+|++
T Consensus 198 t~~ld~~~~~~~~~~l~~~~~-g~-~ii~iSH~~-~~~~~~d~v 238 (251)
T cd03273 198 DAALDLSHTQNIGRMIKTHFK-GS-QFIVVSLKE-GMFNNANVL 238 (251)
T ss_pred CcCCCHHHHHHHHHHHHHHcC-CC-EEEEEECCH-HHHHhCCEE
Confidence 9999 556666666543 43 599999994 444456654
No 308
>KOG0057|consensus
Probab=99.87 E-value=7.5e-24 Score=211.47 Aligned_cols=189 Identities=19% Similarity=0.197 Sum_probs=129.1
Q ss_pred EEEEEEEeeceEEecCce-eecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 75 LIITKIVAFNFKSYAGYV-TLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~-~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
+...++. .+|+.++ +|+ +|||+|++ |+-+||+|+|||||||+||+
T Consensus 352 I~F~dV~----f~y~~k~~iL~--------gvsf~I~k----------------------GekVaIvG~nGsGKSTilr~ 397 (591)
T KOG0057|consen 352 IEFDDVH----FSYGPKRKVLK--------GVSFTIPK----------------------GEKVAIVGSNGSGKSTILRL 397 (591)
T ss_pred EEEEeeE----EEeCCCCceec--------ceeEEecC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 4444444 4698766 765 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceE
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l 233 (388)
|. .+. . .||++.|+|.+++-. +...+| +-||+|||++.+|......++.+.- ..-......+.....-+
T Consensus 398 Ll----rF~-d-~sG~I~IdG~dik~~--~~~SlR-~~Ig~VPQd~~LFndTIl~NI~YGn--~sas~eeV~e~~k~a~~ 466 (591)
T KOG0057|consen 398 LL----RFF-D-YSGSILIDGQDIKEV--SLESLR-QSIGVVPQDSVLFNDTILYNIKYGN--PSASDEEVVEACKRAGL 466 (591)
T ss_pred HH----HHh-c-cCCcEEECCeeHhhh--ChHHhh-hheeEeCCcccccchhHHHHhhcCC--CCcCHHHHHHHHHHcCc
Confidence 99 555 3 599999999988743 233355 4599999999887653322222211 00000000110000000
Q ss_pred --EEEEE--ee--eCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhH
Q psy14062 234 --EIART--AF--YDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTR 302 (388)
Q Consensus 234 --~~~r~--~~--~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ 302 (388)
.+.+. .+ .-+.....|||||+||+.++|++.. +|+++++|||||.| .++.+.+... ..+. |
T Consensus 467 hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK------da~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~r-T 538 (591)
T KOG0057|consen 467 HDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK------DAPILLLDEATSALDSETEREILDMIMDV-MSGR-T 538 (591)
T ss_pred HHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc------CCCeEEecCcccccchhhHHHHHHHHHHh-cCCC-e
Confidence 01111 11 1256778899999999999999999 99999999999999 5666666552 2233 6
Q ss_pred HHHHHHhHHHHHHH
Q psy14062 303 VQLVETDLKALEPE 316 (388)
Q Consensus 303 ii~vtH~l~~l~~~ 316 (388)
+++|-|++..++..
T Consensus 539 vI~IvH~l~ll~~~ 552 (591)
T KOG0057|consen 539 VIMIVHRLDLLKDF 552 (591)
T ss_pred EEEEEecchhHhcC
Confidence 99999999888764
No 309
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.87 E-value=1.6e-23 Score=220.15 Aligned_cols=195 Identities=15% Similarity=0.221 Sum_probs=128.7
Q ss_pred cEEEEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
.+.+++++ .+|.+ +.+ |+|+||+|++ |+.++|+||||||||||+
T Consensus 341 ~i~~~~vs----f~y~~~~~~i--------l~~i~l~i~~----------------------G~~~aIvG~sGsGKSTLl 386 (582)
T PRK11176 341 DIEFRNVT----FTYPGKEVPA--------LRNINFKIPA----------------------GKTVALVGRSGSGKSTIA 386 (582)
T ss_pred eEEEEEEE----EecCCCCCcc--------ccCceEEeCC----------------------CCEEEEECCCCCCHHHHH
Confidence 35666655 46864 334 4599999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccc-ccCC
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYE-IIPG 230 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~-~~~~ 230 (388)
++|+ |+. ++.+|++.++|..+.... ...+| +.+++++|++..|+..-..++.+.... ...+++.. ....
T Consensus 387 ~ll~----gl~-~p~~G~I~i~g~~i~~~~--~~~~~-~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~--~~~~~~i~~al~~ 456 (582)
T PRK11176 387 NLLT----RFY-DIDEGEILLDGHDLRDYT--LASLR-NQVALVSQNVHLFNDTIANNIAYARTE--QYSREQIEEAARM 456 (582)
T ss_pred HHHH----hcc-CCCCceEEECCEEhhhcC--HHHHH-hhceEEccCceeecchHHHHHhcCCCC--CCCHHHHHHHHHH
Confidence 9999 999 778999988886654222 12233 569999999988765332333321100 00111100 0000
Q ss_pred ----ceEE-E-EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 231 ----TDLE-I-ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 231 ----~~l~-~-~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
..+. + .+....-+.....|||||+||+.+||+|.. +|+++|+||||++| ..+.+.+.++.+ +
T Consensus 457 ~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~------~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~ 529 (582)
T PRK11176 457 AYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR------DSPILILDEATSALDTESERAIQAALDELQK-N 529 (582)
T ss_pred hCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh------CCCEEEEECccccCCHHHHHHHHHHHHHHhC-C
Confidence 0000 0 001111233456799999999999999999 99999999999999 445555555433 2
Q ss_pred hhHHHHHHHhHHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
. |+++|||++..+. .+|++.
T Consensus 530 ~-tvI~VtHr~~~~~-~~D~Ii 549 (582)
T PRK11176 530 R-TSLVIAHRLSTIE-KADEIL 549 (582)
T ss_pred C-EEEEEecchHHHH-hCCEEE
Confidence 3 5999999997665 477653
No 310
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.87 E-value=5e-24 Score=190.43 Aligned_cols=142 Identities=23% Similarity=0.290 Sum_probs=101.2
Q ss_pred cccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhh
Q psy14062 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFV 179 (388)
Q Consensus 100 ~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~v 179 (388)
.+|+|+||+|.+ |++++|+|||||||||||+++. + .+|++.+.+..
T Consensus 9 ~~l~~isl~i~~----------------------G~~~~l~G~nG~GKSTLl~~il----~-----~~G~v~~~~~~--- 54 (176)
T cd03238 9 HNLQNLDVSIPL----------------------NVLVVVTGVSGSGKSTLVNEGL----Y-----ASGKARLISFL--- 54 (176)
T ss_pred eeecceEEEEcC----------------------CCEEEEECCCCCCHHHHHHHHh----h-----cCCcEEECCcc---
Confidence 356799999999 9999999999999999999876 2 37886554221
Q ss_pred cCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEee-eCCCCeeeeCCccccHHH
Q psy14062 180 FGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAF-YDNSSYYTLNGKKVHFKE 258 (388)
Q Consensus 180 lg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~-~~~~~~~~LSgGq~qr~~ 258 (388)
...+...+.+++| .. . +....+.. ..+..+..||+||+||+.
T Consensus 55 -----~~~~~~~~~~~~q----------------~~-~---------------l~~~~L~~~~~~~~~~~LSgGq~qrl~ 97 (176)
T cd03238 55 -----PKFSRNKLIFIDQ----------------LQ-F---------------LIDVGLGYLTLGQKLSTLSGGELQRVK 97 (176)
T ss_pred -----cccccccEEEEhH----------------HH-H---------------HHHcCCCccccCCCcCcCCHHHHHHHH
Confidence 0111123555544 00 0 00001111 135567899999999999
Q ss_pred HHHHHHHcCCCCCC--CceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 259 VAKVLRDHGVDLLN--NRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 259 Ia~aL~~~Gi~~~~--p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
+|++|+. + |+++|+|||+++| +.+...+.++++.+. +|+++||+++.+ +.+|++
T Consensus 98 laral~~------~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~-tvIivSH~~~~~-~~~d~i 158 (176)
T cd03238 98 LASELFS------EPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGN-TVILIEHNLDVL-SSADWI 158 (176)
T ss_pred HHHHHhh------CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCC-EEEEEeCCHHHH-HhCCEE
Confidence 9999999 9 9999999999999 666667777665444 599999999876 456654
No 311
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=3.8e-23 Score=175.45 Aligned_cols=178 Identities=17% Similarity=0.234 Sum_probs=121.4
Q ss_pred ecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC--
Q psy14062 88 YAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN-- 165 (388)
Q Consensus 88 y~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn-- 165 (388)
.++...|- +|||+|.+ |+++.|+|||||||||||.-+. |.+-+.
T Consensus 12 l~g~cLLa--------~~n~Tia~----------------------GeivtlMGPSGcGKSTLls~~~----G~La~~F~ 57 (213)
T COG4136 12 LPGSCLLA--------NVNFTIAK----------------------GEIVTLMGPSGCGKSTLLSWMI----GALAGQFS 57 (213)
T ss_pred CCCceEEE--------eeeEEecC----------------------CcEEEEECCCCccHHHHHHHHH----hhcccCcc
Confidence 56666554 99999999 9999999999999999999888 555222
Q ss_pred CCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEec--cccCCCCccccccCCceEEEEEEeeeCC
Q psy14062 166 GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFA--QIIDKPNEEYEIIPGTDLEIARTAFYDN 243 (388)
Q Consensus 166 gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~--~~~~~~~~~~~~~~~~~l~~~r~~~~~~ 243 (388)
-+|+..+++..+..+. ...+.+|++||++-+||.+++..+.++-. .+.++. ........++-..+...-+
T Consensus 58 ~~G~~~l~~~~l~~lP-----a~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~a---Rr~~a~aAL~~~gL~g~f~ 129 (213)
T COG4136 58 CTGELWLNEQRLDMLP-----AAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNA---RRNAANAALERSGLDGAFH 129 (213)
T ss_pred eeeEEEECCeeccccc-----hhhhheeeeecccccccccccccceEEecCcccccHH---HHhhHHHHHHHhccchhhh
Confidence 2577655554433221 12356999999999999999887655421 111111 1111111222223334456
Q ss_pred CCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-HHHHhhhH-----HHHHHhhhHHHHHHHhHHHHH
Q psy14062 244 SSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-EVLYGKYD-----EERTEKLTRVQLVETDLKALE 314 (388)
Q Consensus 244 ~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-e~i~~~l~-----el~~e~~~~ii~vtH~l~~l~ 314 (388)
+.+.+|||||+.|+.+.|+|.. .|++++||||+|.| ..+...++ +.+..+. ..+.||||.+.+.
T Consensus 130 ~dP~tlSGGQrARvaL~R~Lla------~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agi-Ptv~VTHD~~Dvp 199 (213)
T COG4136 130 QDPATLSGGQRARVALLRALLA------QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGI-PTVQVTHDLQDVP 199 (213)
T ss_pred cChhhcCcchHHHHHHHHHHHh------CcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCC-CeEEEecccccCC
Confidence 7889999999999999999999 99999999999999 22333333 3333344 3678999987765
No 312
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.87 E-value=1.4e-23 Score=225.44 Aligned_cols=192 Identities=15% Similarity=0.137 Sum_probs=129.1
Q ss_pred cEEEEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
.+.+.+++ .+|++ +.+ |+|+||+|++ |+.++|+||||||||||+
T Consensus 477 ~I~~~~vs----f~y~~~~~~v--------L~~isl~i~~----------------------Ge~vaIvG~sGsGKSTLl 522 (710)
T TIGR03796 477 YVELRNIT----FGYSPLEPPL--------IENFSLTLQP----------------------GQRVALVGGSGSGKSTIA 522 (710)
T ss_pred eEEEEEEE----EecCCCCCCc--------ccceeEEEcC----------------------CCEEEEECCCCCCHHHHH
Confidence 45555555 46864 334 5599999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cccC-
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EIIP- 229 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~- 229 (388)
++|+ |+. ++.+|++.++|.++.-.. ...+| +.+++++|++..|... ..++...+.. +..+++. +...
T Consensus 523 klL~----gl~-~p~~G~I~idg~~i~~~~--~~~lr-~~i~~v~Q~~~lf~gT-i~eNi~l~~~--~~~~~~i~~al~~ 591 (710)
T TIGR03796 523 KLVA----GLY-QPWSGEILFDGIPREEIP--REVLA-NSVAMVDQDIFLFEGT-VRDNLTLWDP--TIPDADLVRACKD 591 (710)
T ss_pred HHHh----cCC-CCCCcEEEECCEeHHHCC--HHHHH-hheeEEecCChhhhcc-HHHHhhCCCC--CCCHHHHHHHHHH
Confidence 9999 999 778999999887665332 23344 5699999999888653 3333222211 0011100 0000
Q ss_pred ---CceEE-E-EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 230 ---GTDLE-I-ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 230 ---~~~l~-~-~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
...+. + .+....-+.....|||||+||+++||+|.. +|+++||||||++| ..+.+.+.+ .+
T Consensus 592 ~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~------~p~iliLDEptS~LD~~te~~i~~~l~~---~~ 662 (710)
T TIGR03796 592 AAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR------NPSILILDEATSALDPETEKIIDDNLRR---RG 662 (710)
T ss_pred hCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh------CCCEEEEECccccCCHHHHHHHHHHHHh---cC
Confidence 00000 0 011111234456799999999999999999 99999999999999 334444433 33
Q ss_pred hhHHHHHHHhHHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
.|++++||+++.+.. +|++.
T Consensus 663 -~T~IiitHrl~~i~~-~D~Ii 682 (710)
T TIGR03796 663 -CTCIIVAHRLSTIRD-CDEII 682 (710)
T ss_pred -CEEEEEecCHHHHHh-CCEEE
Confidence 369999999988765 77653
No 313
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=7.6e-25 Score=200.29 Aligned_cols=175 Identities=19% Similarity=0.143 Sum_probs=130.4
Q ss_pred cccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhh
Q psy14062 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFV 179 (388)
Q Consensus 100 ~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~v 179 (388)
.+|+||||++.+ |+.++|||+|||||||||++|+ |++ +|++|++.+.+.+.+.
T Consensus 41 ~aL~disf~i~~----------------------Ge~vGiiG~NGaGKSTLlklia----Gi~-~Pt~G~v~v~G~v~~l 93 (249)
T COG1134 41 WALKDISFEIYK----------------------GERVGIIGHNGAGKSTLLKLIA----GIY-KPTSGKVKVTGKVAPL 93 (249)
T ss_pred EEecCceEEEeC----------------------CCEEEEECCCCCcHHHHHHHHh----Ccc-CCCCceEEEcceEehh
Confidence 467899999999 9999999999999999999999 999 8899998887766554
Q ss_pred cCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHH
Q psy14062 180 FGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEV 259 (388)
Q Consensus 180 lg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~I 259 (388)
+.. .+| +.|.++..++......+.+....+........+++..+....+.+...+|.||+-|+..
T Consensus 94 i~l--------g~G-------f~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaF 158 (249)
T COG1134 94 IEL--------GAG-------FDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAF 158 (249)
T ss_pred hhc--------ccC-------CCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHH
Confidence 321 122 12445555554433333333322211111123344445556688999999999999999
Q ss_pred HHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 260 AKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 260 a~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+-+... +|++||+||-++.- +.....+.++.+++. ++++|+|+++.++++||++.-+
T Consensus 159 sia~~~------~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~-tiv~VSHd~~~I~~~Cd~~i~l 220 (249)
T COG1134 159 SVATHV------EPDILLLDEVLAVGDAAFQEKCLERLNELVEKNK-TIVLVSHDLGAIKQYCDRAIWL 220 (249)
T ss_pred hhhhhc------CCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCC-EEEEEECCHHHHHHhcCeeEEE
Confidence 999999 99999999998755 666668888866664 5999999999999999987543
No 314
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.87 E-value=6e-24 Score=220.99 Aligned_cols=193 Identities=18% Similarity=0.218 Sum_probs=130.0
Q ss_pred cEEEEEEEeeceEEecCc--eeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKIVAFNFKSYAGY--VTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~--~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
.+.+.+++ .+|.+. .+ |+|+||+|++ |+.++|+||||||||||+
T Consensus 320 ~i~~~~v~----f~y~~~~~~i--------l~~i~l~i~~----------------------G~~~~ivG~sGsGKSTL~ 365 (529)
T TIGR02857 320 SLEFSGLS----VAYPGRRAPA--------LRPVSFTVPP----------------------GERVALVGPSGAGKSTLL 365 (529)
T ss_pred eEEEEEEE----EECCCCCccc--------ccceeEEECC----------------------CCEEEEECCCCCCHHHHH
Confidence 45555555 568653 34 4599999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cccCC
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EIIPG 230 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~~ 230 (388)
++|+ |+. ++.+|++.++|..+.-. +...+| +.+++++|++..|+. +..++...... +..++.. .....
T Consensus 366 ~ll~----g~~-~~~~G~I~~~g~~i~~~--~~~~lr-~~i~~v~Q~~~lf~~-ti~~Ni~~~~~--~~~~~~i~~a~~~ 434 (529)
T TIGR02857 366 NLLL----GFV-DPTEGSIAVNGVPLADA--DADSWR-DQIAWVPQHPFLFAG-TIAENIRLARP--DASDAEIRRALER 434 (529)
T ss_pred HHHh----cCC-CCCCcEEEECCEehhhC--CHHHHH-hheEEEcCCCcccCc-CHHHHHhccCC--CCCHHHHHHHHHH
Confidence 9999 998 77899998888765422 223344 569999999988865 44433322111 0011110 00000
Q ss_pred ----ceEEEE--EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 231 ----TDLEIA--RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 231 ----~~l~~~--r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
..+.-. +....-+.....|||||+||+++||+|.. +|+++|+||||++| +.+.+.+.++.. +
T Consensus 435 ~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~------~~~ililDE~ts~lD~~~~~~i~~~l~~~~~-~ 507 (529)
T TIGR02857 435 AGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR------DAPLLLLDEPTAHLDAETEALVTEALRALAQ-G 507 (529)
T ss_pred cCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc------CCCEEEEeCcccccCHHHHHHHHHHHHHhcC-C
Confidence 000000 11112234556799999999999999999 99999999999999 555556655532 3
Q ss_pred hhHHHHHHHhHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~ 320 (388)
. +++++||+++.++ .+|++
T Consensus 508 ~-t~i~itH~~~~~~-~~d~i 526 (529)
T TIGR02857 508 R-TVLLVTHRLALAE-RADRI 526 (529)
T ss_pred C-EEEEEecCHHHHH-hCCEE
Confidence 3 5999999998764 46653
No 315
>PLN03073 ABC transporter F family; Provisional
Probab=99.87 E-value=8.4e-24 Score=225.60 Aligned_cols=185 Identities=17% Similarity=0.196 Sum_probs=123.7
Q ss_pred CcEEEEEEEeeceEEecC-ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 73 PRLIITKIVAFNFKSYAG-YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~-~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
+.+.+.+++ ++|++ ..+|. ||||+|.+ |++++|+|||||||||||
T Consensus 507 ~~L~~~~ls----~~y~~~~~il~--------~vsl~i~~----------------------Ge~i~LvG~NGsGKSTLL 552 (718)
T PLN03073 507 PIISFSDAS----FGYPGGPLLFK--------NLNFGIDL----------------------DSRIAMVGPNGIGKSTIL 552 (718)
T ss_pred ceEEEEeeE----EEeCCCCeeEe--------ccEEEEcC----------------------CCEEEEECCCCCcHHHHH
Confidence 456677777 77864 44544 99999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEE-EeccccCCCCccccccCC
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAI-HFAQIIDKPNEEYEIIPG 230 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~-~~~~~~~~~~~~~~~~~~ 230 (388)
++|+ |++ ++.+|++.+.+ ..+++|++|++. ...+...... .+...+..... ..+ .
T Consensus 553 k~L~----Gll-~p~~G~I~~~~--------------~~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~~~~~--~~i-~ 608 (718)
T PLN03073 553 KLIS----GEL-QPSSGTVFRSA--------------KVRMAVFSQHHV--DGLDLSSNPLLYMMRCFPGVPE--QKL-R 608 (718)
T ss_pred HHHh----CCC-CCCCceEEECC--------------ceeEEEEecccc--ccCCcchhHHHHHHHhcCCCCH--HHH-H
Confidence 9999 998 77899965421 135899998742 1222211111 11010100000 000 0
Q ss_pred ceEEEEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH--HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 231 TDLEIARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM--EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 231 ~~l~~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L--e~i~~~l~el~~e~~~~ii~vt 307 (388)
..+...++. ...++++..|||||+||+.||++|.. +|++|||||||++| .....++..++.... +++++|
T Consensus 609 ~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~------~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~g-tvIivS 681 (718)
T PLN03073 609 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK------KPHILLLDEPSNHLDLDAVEALIQGLVLFQG-GVLMVS 681 (718)
T ss_pred HHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhc------CCCEEEEcCCCCCCCHHHHHHHHHHHHHcCC-EEEEEE
Confidence 112222222 13456889999999999999999999 99999999999999 222222333333223 599999
Q ss_pred HhHHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAVN 322 (388)
Q Consensus 308 H~l~~l~~~~d~~~~ 322 (388)
|++..+...|+++..
T Consensus 682 Hd~~~i~~~~drv~~ 696 (718)
T PLN03073 682 HDEHLISGSVDELWV 696 (718)
T ss_pred CCHHHHHHhCCEEEE
Confidence 999999999887643
No 316
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.87 E-value=1e-22 Score=215.91 Aligned_cols=192 Identities=15% Similarity=0.153 Sum_probs=118.3
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|++..+|. ||||+|.+ |++++|+|||||||||||++
T Consensus 3 ~l~i~~ls----~~~~~~~il~--------~is~~i~~----------------------Ge~v~LvG~NGsGKSTLLri 48 (635)
T PRK11147 3 LISIHGAW----LSFSDAPLLD--------NAELHIED----------------------NERVCLVGRNGAGKSTLMKI 48 (635)
T ss_pred EEEEeeEE----EEeCCceeEe--------CcEEEECC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 45566666 8898877755 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhh-hcCccchhhhhccceeEecccCC-----------CCCc-------ceEEEEEEe
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLF-VFGYRASKIRANKLSVLMHKSDQ-----------VGGV-------SRCSVAIHF 214 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~-vlg~~~~~lr~~~i~~l~q~~~~-----------~~~~-------~~~eV~~~~ 214 (388)
|+ |++ ++.+|++.+.+.... .+.... .+ ..++++++.... +..+ ...++...+
T Consensus 49 ia----G~~-~p~~G~I~~~~~~~~~~l~q~~--~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (635)
T PRK11147 49 LN----GEV-LLDDGRIIYEQDLIVARLQQDP--PR-NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNEL 120 (635)
T ss_pred Hc----CCC-CCCCeEEEeCCCCEEEEeccCC--CC-CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHH
Confidence 99 998 778999876542110 000000 00 112222221000 0000 000000000
Q ss_pred ccc---cCC-CCcc-ccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH----
Q psy14062 215 AQI---IDK-PNEE-YEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM---- 285 (388)
Q Consensus 215 ~~~---~~~-~~~~-~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L---- 285 (388)
..+ ... .... ...+. ..+...++. .++++..|||||+||+.||++|+. +|++|||||||++|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~-~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL~~------~P~lLLLDEPt~~LD~~~ 191 (635)
T PRK11147 121 AKLQEQLDHHNLWQLENRIN-EVLAQLGLD--PDAALSSLSGGWLRKAALGRALVS------NPDVLLLDEPTNHLDIET 191 (635)
T ss_pred HHHHHHHHhcCcccHHHHHH-HHHHhCCCC--CCCchhhcCHHHHHHHHHHHHHhc------CCCEEEEcCCCCccCHHH
Confidence 000 000 0000 00000 111111221 357789999999999999999999 99999999999999
Q ss_pred -HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 286 -EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 286 -e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
+.+.+.+.++ .. +|++|||++..+...|+++
T Consensus 192 ~~~L~~~L~~~---~~-tvlivsHd~~~l~~~~d~i 223 (635)
T PRK11147 192 IEWLEGFLKTF---QG-SIIFISHDRSFIRNMATRI 223 (635)
T ss_pred HHHHHHHHHhC---CC-EEEEEeCCHHHHHHhcCeE
Confidence 4444555444 23 5999999999999998865
No 317
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.9e-23 Score=181.39 Aligned_cols=200 Identities=15% Similarity=0.177 Sum_probs=137.8
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
|.+.+.+++ |+|++..... +|||++.+ |++.+|+|.|||||||||+
T Consensus 5 PLL~V~~ls----k~Yg~~~gc~--------~vsF~l~P----------------------GeVLgiVGESGSGKtTLL~ 50 (258)
T COG4107 5 PLLSVSGLS----KLYGPGKGCR--------DVSFDLYP----------------------GEVLGIVGESGSGKTTLLK 50 (258)
T ss_pred cceeehhhh----hhhCCCcCcc--------ccceeecC----------------------CcEEEEEecCCCcHHhHHH
Confidence 567788888 9999877654 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeeh-----hhhhhcCccch-hhhhccceeEecccCCCCCcce---EEEEEEe----ccccC
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVID-----SMLFVFGYRAS-KIRANKLSVLMHKSDQVGGVSR---CSVAIHF----AQIID 219 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~d-----a~i~vlg~~~~-~lr~~~i~~l~q~~~~~~~~~~---~eV~~~~----~~~~~ 219 (388)
||+ +-+ ++.+|.+.+.. .+++-+++... .+-+..-|+|-|+|.---.+.+ +++.--+ .+-|+
T Consensus 51 ~is----~rl-~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG 125 (258)
T COG4107 51 CIS----GRL-TPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG 125 (258)
T ss_pred HHh----ccc-CCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhh
Confidence 999 877 77899987755 23444443222 2233457889888642111111 1111000 01111
Q ss_pred CCC-ccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhH
Q psy14062 220 KPN-EEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYD 293 (388)
Q Consensus 220 ~~~-~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~ 293 (388)
+-. .........++...| -+..+..+||||+||+.||+-|.. .|++++|||||.+| ..+.++++
T Consensus 126 ~iR~~a~~WL~~VEI~~~R----iDD~PrtFSGGMqQRLQiARnLVt------~PrLvfMDEPTGGLDVSVQARLLDllr 195 (258)
T COG4107 126 NIRAEAQDWLEEVEIDLDR----IDDLPRTFSGGMQQRLQIARNLVT------RPRLVFMDEPTGGLDVSVQARLLDLLR 195 (258)
T ss_pred hHHHHHHHHHHhcccCccc----ccCcccccchHHHHHHHHHHHhcc------CCceEEecCCCCCcchhhHHHHHHHHH
Confidence 110 001111222333333 245578889999999999999999 99999999999999 77778888
Q ss_pred HHHHHhhhHHHHHHHhHHHHHHHHHHHH
Q psy14062 294 EERTEKLTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 294 el~~e~~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
.+..+-...+++||||+..+.-.+++..
T Consensus 196 gLv~~l~la~viVTHDl~VarLla~rlm 223 (258)
T COG4107 196 GLVRELGLAVVIVTHDLAVARLLADRLM 223 (258)
T ss_pred HHHHhcCceEEEEechhHHHHHhhhcce
Confidence 7776655458999999998888777654
No 318
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.87 E-value=1.2e-23 Score=220.90 Aligned_cols=195 Identities=15% Similarity=0.205 Sum_probs=131.4
Q ss_pred cEEEEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
.+.+++++ .+|.+ +.+ |+|+||+|++ |++++|+||||||||||+
T Consensus 338 ~i~~~~v~----f~y~~~~~~i--------l~~i~~~i~~----------------------G~~~aivG~sGsGKSTL~ 383 (574)
T PRK11160 338 SLTLNNVS----FTYPDQPQPV--------LKGLSLQIKA----------------------GEKVALLGRTGCGKSTLL 383 (574)
T ss_pred eEEEEEEE----EECCCCCCcc--------eecceEEECC----------------------CCEEEEECCCCCCHHHHH
Confidence 46666666 56864 234 4499999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc----cc
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY----EI 227 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~----~~ 227 (388)
++|+ |+. ++.+|++.++|..+.-. +...+| +.+++++|++..|+. +..++...... +..++.. +.
T Consensus 384 ~ll~----g~~-~p~~G~I~i~g~~i~~~--~~~~~r-~~i~~v~Q~~~lf~~-ti~~Ni~~~~~--~~~~~~i~~al~~ 452 (574)
T PRK11160 384 QLLT----RAW-DPQQGEILLNGQPIADY--SEAALR-QAISVVSQRVHLFSA-TLRDNLLLAAP--NASDEALIEVLQQ 452 (574)
T ss_pred HHHh----cCC-CCCCceEEECCEEhhhC--CHHHHH-hheeEEcccchhhcc-cHHHHhhcCCC--ccCHHHHHHHHHH
Confidence 9999 998 77899998887655322 223344 569999999988765 33333222110 1111110 00
Q ss_pred cCC-ceEEE-EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhh
Q psy14062 228 IPG-TDLEI-ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKL 300 (388)
Q Consensus 228 ~~~-~~l~~-~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~ 300 (388)
..- ..+.- .+....-+.....|||||+||++|||+|.. +|+++|+||||++| +.+.+.+.++.+ +.
T Consensus 453 ~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~------~~~ililDE~ts~lD~~t~~~i~~~l~~~~~-~~ 525 (574)
T PRK11160 453 VGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH------DAPLLLLDEPTEGLDAETERQILELLAEHAQ-NK 525 (574)
T ss_pred cCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CC
Confidence 000 00000 011111234567899999999999999999 99999999999999 445556655543 33
Q ss_pred hHHHHHHHhHHHHHHHHHHHHH
Q psy14062 301 TRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 301 ~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
++++++|++..+.. +|++..
T Consensus 526 -tviiitHr~~~~~~-~d~i~~ 545 (574)
T PRK11160 526 -TVLMITHRLTGLEQ-FDRICV 545 (574)
T ss_pred -EEEEEecChhHHHh-CCEEEE
Confidence 59999999988754 776543
No 319
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.87 E-value=3.9e-23 Score=217.72 Aligned_cols=192 Identities=16% Similarity=0.218 Sum_probs=129.2
Q ss_pred cEEEEEEEeeceEEecC-ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSYAG-YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~-~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
.+.+++++ .+|++ +.+ |+|+||+|++ |+.++|+||||||||||++
T Consensus 340 ~i~~~~v~----f~y~~~~~i--------l~~i~l~i~~----------------------Ge~iaIvG~SGsGKSTLl~ 385 (592)
T PRK10790 340 RIDIDNVS----FAYRDDNLV--------LQNINLSVPS----------------------RGFVALVGHTGSGKSTLAS 385 (592)
T ss_pred eEEEEEEE----EEeCCCCce--------eeceeEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 35555555 45854 334 4599999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccc-ccCC-
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYE-IIPG- 230 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~-~~~~- 230 (388)
+|+ |+. ++.+|++.++|..+.-. +...+| +.+++++|++..|++.-..++.+ ... ..+.+.. ....
T Consensus 386 lL~----gl~-~p~~G~I~idg~~i~~~--~~~~l~-~~i~~v~Q~~~lF~~Ti~~NI~~-~~~---~~d~~i~~a~~~~ 453 (592)
T PRK10790 386 LLM----GYY-PLTEGEIRLDGRPLSSL--SHSVLR-QGVAMVQQDPVVLADTFLANVTL-GRD---ISEEQVWQALETV 453 (592)
T ss_pred HHh----ccc-CCCCceEEECCEEhhhC--CHHHHH-hheEEEccCCccccchHHHHHHh-CCC---CCHHHHHHHHHHc
Confidence 999 999 67799998888765422 223344 56999999999887633223322 211 0111000 0000
Q ss_pred ---ceEE-E-EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhh
Q psy14062 231 ---TDLE-I-ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKL 300 (388)
Q Consensus 231 ---~~l~-~-~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~ 300 (388)
..+. + .+....-+.....|||||+||++|||+|.. +|+++||||||++| +.+.+.+.++... .
T Consensus 454 gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~------~~~illlDEpts~LD~~t~~~i~~~l~~~~~~-~ 526 (592)
T PRK10790 454 QLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ------TPQILILDEATANIDSGTEQAIQQALAAVREH-T 526 (592)
T ss_pred CcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhCC-C
Confidence 0000 0 011111233456799999999999999999 99999999999999 5555566655443 3
Q ss_pred hHHHHHHHhHHHHHHHHHHH
Q psy14062 301 TRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 301 ~~ii~vtH~l~~l~~~~d~~ 320 (388)
+++++||++..+.. +|++
T Consensus 527 -tvIivtHr~~~l~~-~D~i 544 (592)
T PRK10790 527 -TLVVIAHRLSTIVE-ADTI 544 (592)
T ss_pred -EEEEEecchHHHHh-CCEE
Confidence 59999999977664 6765
No 320
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.87 E-value=2.3e-23 Score=189.76 Aligned_cols=176 Identities=22% Similarity=0.245 Sum_probs=115.0
Q ss_pred EEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhc
Q psy14062 78 TKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 78 ~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
..+.+.||++|+. +++|++.+ | +++|+||||||||||+++|+
T Consensus 2 ~~~~~~~fr~~~~-------------~~~l~~~~----------------------g-~~~i~G~nGsGKStll~al~-- 43 (197)
T cd03278 2 KKLELKGFKSFAD-------------KTTIPFPP----------------------G-LTAIVGPNGSGKSNIIDAIR-- 43 (197)
T ss_pred cEEEEeCCcCcCC-------------CeeeecCC----------------------C-cEEEECCCCCCHHHHHHHHH--
Confidence 4688999999954 56677777 8 99999999999999999999
Q ss_pred ccEEEcCCCCCcceee--hhhhhhcCccch-hhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEE
Q psy14062 158 FNAIIGPNGSGKSNVI--DSMLFVFGYRAS-KIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLE 234 (388)
Q Consensus 158 ~ngIiGpngSGKs~i~--da~i~vlg~~~~-~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~ 234 (388)
+++++. .|.+.-. ...+...|.... ..+...++++||++..+.. ... .....+ .+.
T Consensus 44 --~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~---------~~~----~~~~~~-----~l~ 102 (197)
T cd03278 44 --WVLGEQ-SAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYS---------IIS----QGDVSE-----IIE 102 (197)
T ss_pred --HHhccc-cchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCcee---------EEe----hhhHHH-----HHh
Confidence 777432 3321100 011222343321 1223569999998876510 000 000001 111
Q ss_pred EEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHh
Q psy14062 235 IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETD 309 (388)
Q Consensus 235 ~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~ 309 (388)
. ....+..+..||+||+||+++|++|+..- ...|+++|+|||+++| +.+...+.++.+ +. +++++||+
T Consensus 103 ~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~--~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~-tiIiitH~ 175 (197)
T cd03278 103 A---PGKKVQRLSLLSGGEKALTALALLFAIFR--VRPSPFCVLDEVDAALDDANVERFARLLKEFSK-ET-QFIVITHR 175 (197)
T ss_pred C---CCccccchhhcCHHHHHHHHHHHHHHHhc--cCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-CC-EEEEEECC
Confidence 1 22345678899999999999999986210 0156899999999999 666667777654 33 59999999
Q ss_pred HHHHHHHHHHH
Q psy14062 310 LKALEPELRKA 320 (388)
Q Consensus 310 l~~l~~~~d~~ 320 (388)
++.+ +.+|++
T Consensus 176 ~~~~-~~~d~v 185 (197)
T cd03278 176 KGTM-EAADRL 185 (197)
T ss_pred HHHH-hhcceE
Confidence 9876 466654
No 321
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.86 E-value=7.2e-23 Score=213.63 Aligned_cols=194 Identities=19% Similarity=0.214 Sum_probs=130.7
Q ss_pred cEEEEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
.+.+.+++ .+|++ +.+ |+|+||++++ |+.++|+||||||||||+
T Consensus 316 ~i~~~~v~----~~y~~~~~~~--------l~~~~~~i~~----------------------G~~~~ivG~sGsGKSTL~ 361 (544)
T TIGR01842 316 HLSVENVT----IVPPGGKKPT--------LRGISFRLQA----------------------GEALAIIGPSGSGKSTLA 361 (544)
T ss_pred eEEEEEEE----EEcCCCCccc--------cccceEEEcC----------------------CCEEEEECCCCCCHHHHH
Confidence 45666666 56853 344 4499999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccc-ccC-
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYE-IIP- 229 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~-~~~- 229 (388)
++++ |+. ++.+|++.++|..+... +...+| +.+++++|++..++. +..++...+.. +..++... ...
T Consensus 362 ~ll~----g~~-~~~~G~i~~~g~~i~~~--~~~~~~-~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~ 430 (544)
T TIGR01842 362 RLIV----GIW-PPTSGSVRLDGADLKQW--DRETFG-KHIGYLPQDVELFPG-TVAENIARFGE--NADPEKIIEAAKL 430 (544)
T ss_pred HHHh----CCC-CCCCceEEECCEehhhC--CHHHHh-hheEEecCCcccccc-cHHHHHhccCC--CCCHHHHHHHHHH
Confidence 9999 998 78899988877654322 222233 569999999888765 44433322211 01111100 000
Q ss_pred ---CceEEEE--EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 230 ---GTDLEIA--RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 230 ---~~~l~~~--r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
...+... +.....+.....|||||+||+++||+|.. +|+++|+||||++| +.+.+.+.++...+
T Consensus 431 ~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~------~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~ 504 (544)
T TIGR01842 431 AGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG------DPKLVVLDEPNSNLDEEGEQALANAIKALKARG 504 (544)
T ss_pred hChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCC
Confidence 0000000 11112344567899999999999999999 99999999999999 55556666654333
Q ss_pred hhHHHHHHHhHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~ 320 (388)
. +++++||+++.+ +.+|++
T Consensus 505 ~-tvi~ith~~~~~-~~~d~i 523 (544)
T TIGR01842 505 I-TVVVITHRPSLL-GCVDKI 523 (544)
T ss_pred C-EEEEEeCCHHHH-HhCCEE
Confidence 4 599999999865 456664
No 322
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.86 E-value=2.8e-23 Score=222.33 Aligned_cols=191 Identities=18% Similarity=0.238 Sum_probs=128.7
Q ss_pred cEEEEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
.+.+++++ .+|.+ +.+ |+|+||+|++ |+.+||+||||||||||+
T Consensus 451 ~I~~~nvs----f~Y~~~~~~v--------L~~isl~i~~----------------------Ge~vaIvG~sGsGKSTLl 496 (686)
T TIGR03797 451 AIEVDRVT----FRYRPDGPLI--------LDDVSLQIEP----------------------GEFVAIVGPSGSGKSTLL 496 (686)
T ss_pred eEEEEEEE----EEcCCCCccc--------eeeeEEEECC----------------------CCEEEEECCCCCCHHHHH
Confidence 35555555 46853 334 4599999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cccCC
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EIIPG 230 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~~ 230 (388)
++|+ |+. ++.+|++.++|.++.-. +...+| +.+++++|++..|++.-..++.+ ... . ++++. .....
T Consensus 497 klL~----gl~-~p~~G~I~idg~~i~~~--~~~~lr-~~i~~v~Q~~~lf~gTI~eNi~~-~~~-~--~~e~i~~al~~ 564 (686)
T TIGR03797 497 RLLL----GFE-TPESGSVFYDGQDLAGL--DVQAVR-RQLGVVLQNGRLMSGSIFENIAG-GAP-L--TLDEAWEAARM 564 (686)
T ss_pred HHHh----CCC-CCCCCEEEECCEEcCcC--CHHHHH-hccEEEccCCccCcccHHHHHhc-CCC-C--CHHHHHHHHHH
Confidence 9999 998 77899999888765422 233455 55999999999886533323322 211 0 11100 00000
Q ss_pred ----ceEEE--EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 231 ----TDLEI--ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 231 ----~~l~~--~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
..+.- .+....-+.....|||||+||+.|||+|.. +|+++||||||++| +.+.+.+.++ +
T Consensus 565 a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~------~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~ 635 (686)
T TIGR03797 565 AGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVR------KPRILLFDEATSALDNRTQAIVSESLERL---K 635 (686)
T ss_pred cCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCccCCCHHHHHHHHHHHHHh---C
Confidence 00000 011111233456799999999999999999 99999999999999 4444454443 3
Q ss_pred hhHHHHHHHhHHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
. |++++||+++.+.. +|++.
T Consensus 636 ~-T~IiItHr~~~i~~-~D~Ii 655 (686)
T TIGR03797 636 V-TRIVIAHRLSTIRN-ADRIY 655 (686)
T ss_pred C-eEEEEecChHHHHc-CCEEE
Confidence 3 69999999988765 77653
No 323
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=1e-23 Score=188.74 Aligned_cols=186 Identities=14% Similarity=0.076 Sum_probs=135.5
Q ss_pred CcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhh
Q psy14062 99 TGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLF 178 (388)
Q Consensus 99 ~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~ 178 (388)
..+|.++||+|++ |+|+.|||.||||||||+++|+ |-+ ++++|++.|++.++.
T Consensus 19 k~~l~~~sL~I~~----------------------g~FvtViGsNGAGKSTlln~ia----G~l-~~t~G~I~Idg~dVt 71 (263)
T COG1101 19 KRALNGLSLEIAE----------------------GDFVTVIGSNGAGKSTLLNAIA----GDL-KPTSGQILIDGVDVT 71 (263)
T ss_pred HHHHhcCceeecC----------------------CceEEEEcCCCccHHHHHHHhh----Ccc-ccCCceEEECceecc
Confidence 3456699999999 9999999999999999999999 988 788999999888764
Q ss_pred hcCccchhhhhccceeEecccC--CCCCcceEEEEEEeccc---cCCCC---ccccccCCceEEE--EEEeeeCCCCeee
Q psy14062 179 VFGYRASKIRANKLSVLMHKSD--QVGGVSRCSVAIHFAQI---IDKPN---EEYEIIPGTDLEI--ARTAFYDNSSYYT 248 (388)
Q Consensus 179 vlg~~~~~lr~~~i~~l~q~~~--~~~~~~~~eV~~~~~~~---~~~~~---~~~~~~~~~~l~~--~r~~~~~~~~~~~ 248 (388)
-. +..-|+..++-|||+|. ..+.++.+|+....... .+... ..........+.. .++..+.+.+...
T Consensus 72 k~---~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~igl 148 (263)
T COG1101 72 KK---SVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL 148 (263)
T ss_pred cC---CHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhh
Confidence 32 33456777888999975 45667766654322110 00000 0000000011111 1233445678899
Q ss_pred eCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 249 LNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 249 LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
|||||+|-+.++.|... .|++++|||-|++| +.++++-.+..++...+.++|||+|+++-.+.+|.
T Consensus 149 LSGGQRQalsL~MAtl~------~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~Rl 219 (263)
T COG1101 149 LSGGQRQALSLLMATLH------PPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRL 219 (263)
T ss_pred ccchHHHHHHHHHHhcC------CCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeE
Confidence 99999999999999988 99999999999999 66777666766666667899999999999887764
No 324
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.86 E-value=3.1e-23 Score=198.90 Aligned_cols=180 Identities=17% Similarity=0.194 Sum_probs=117.3
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+.+.+.++. +. ++.+| +++||+|.+ |++++|+||||||||||++
T Consensus 38 ~~l~i~nls----~~--~~~vL--------~~vs~~i~~----------------------Ge~~~liG~NGsGKSTLl~ 81 (282)
T cd03291 38 NNLFFSNLC----LV--GAPVL--------KNINLKIEK----------------------GEMLAITGSTGSGKTSLLM 81 (282)
T ss_pred CeEEEEEEE----Ee--cccce--------eeeeEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 456777776 32 34454 499999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCC--CccccccC-
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKP--NEEYEIIP- 229 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~--~~~~~~~~- 229 (388)
+|+ |++ ++.+|++.+.+ .++|++|.+..++. ++.++...... .... ........
T Consensus 82 ~I~----Gl~-~p~~G~I~i~g----------------~i~yv~q~~~l~~~-tv~enl~~~~~-~~~~~~~~~l~~~~l 138 (282)
T cd03291 82 LIL----GEL-EPSEGKIKHSG----------------RISFSSQFSWIMPG-TIKENIIFGVS-YDEYRYKSVVKACQL 138 (282)
T ss_pred HHh----CCC-CCCCcEEEECC----------------EEEEEeCccccccc-CHHHHhhcccc-cCHHHHHHHHHHhCC
Confidence 999 998 78899976643 28888888765543 33322211100 0000 00000000
Q ss_pred CceEEEE--EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhh-HHHHHHhhh
Q psy14062 230 GTDLEIA--RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKY-DEERTEKLT 301 (388)
Q Consensus 230 ~~~l~~~--r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l-~el~~e~~~ 301 (388)
...+... +.....+.....|||||+||+.+|++|+. +|+++|+|||+++| +.+...+ ..+. ++.
T Consensus 139 ~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~------~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~- 210 (282)
T cd03291 139 EEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK------DADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANK- 210 (282)
T ss_pred HHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc------CCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCC-
Confidence 0000000 00001123457899999999999999999 99999999999999 3344433 3333 333
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q psy14062 302 RVQLVETDLKALEPELRKA 320 (388)
Q Consensus 302 ~ii~vtH~l~~l~~~~d~~ 320 (388)
+|+++||+++.+. .+|++
T Consensus 211 tIiiisH~~~~~~-~~d~i 228 (282)
T cd03291 211 TRILVTSKMEHLK-KADKI 228 (282)
T ss_pred EEEEEeCChHHHH-hCCEE
Confidence 5999999999874 67765
No 325
>KOG0055|consensus
Probab=99.86 E-value=1.3e-23 Score=227.22 Aligned_cols=185 Identities=17% Similarity=0.203 Sum_probs=127.1
Q ss_pred EEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC
Q psy14062 86 KSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN 165 (388)
Q Consensus 86 ksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn 165 (388)
.+|..++- ...|+|+||.|++ |+++||||||||||||++.+|. ++. .|
T Consensus 358 FsYPsRpd-----v~Il~g~sl~i~~----------------------G~~valVG~SGsGKST~i~LL~----Rfy-dP 405 (1228)
T KOG0055|consen 358 FSYPSRPD-----VKILKGVSLKIPS----------------------GQTVALVGPSGSGKSTLIQLLA----RFY-DP 405 (1228)
T ss_pred ecCCCCCc-----chhhCCeEEEeCC----------------------CCEEEEECCCCCCHHHHHHHHH----Hhc-CC
Confidence 57987652 2245699999999 9999999999999999999999 777 55
Q ss_pred CCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc----cc---cC-CceEE-E-
Q psy14062 166 GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY----EI---IP-GTDLE-I- 235 (388)
Q Consensus 166 gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~----~~---~~-~~~l~-~- 235 (388)
.+|.+.|+|.++..+ +...+|. .||.|+|+|.+|.. +..++..+ ++++... +. .. ..-+. +
T Consensus 406 ~~G~V~idG~di~~~--~~~~lr~-~iglV~QePvlF~~-tI~eNI~~-----G~~dat~~~i~~a~k~ana~~fi~~lp 476 (1228)
T KOG0055|consen 406 TSGEVLIDGEDIRNL--NLKWLRS-QIGLVSQEPVLFAT-TIRENIRY-----GKPDATREEIEEAAKAANAHDFILKLP 476 (1228)
T ss_pred CCceEEEcCccchhc--chHHHHh-hcCeeeechhhhcc-cHHHHHhc-----CCCcccHHHHHHHHHHccHHHHHHhhH
Confidence 699999998877643 3455665 69999999977643 33333221 1111000 00 00 00000 0
Q ss_pred EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH----HHHHh-hhHHHHHHhhhHHHHHHHhH
Q psy14062 236 ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM----EVLYG-KYDEERTEKLTRVQLVETDL 310 (388)
Q Consensus 236 ~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L----e~i~~-~l~el~~e~~~~ii~vtH~l 310 (388)
.+...+-+...-+|||||+||++|||+|.. +|++|||||||++| |.+.. .|+.. ..+. |.++|+|++
T Consensus 477 ~g~~T~vge~g~qLSGGQKQRIAIARalv~------~P~ILLLDEaTSaLD~~se~~Vq~ALd~~-~~gr-TTivVaHRL 548 (1228)
T KOG0055|consen 477 DGYDTLVGERGVQLSGGQKQRIAIARALVR------NPKILLLDEATSALDAESERVVQEALDKA-SKGR-TTIVVAHRL 548 (1228)
T ss_pred HhhcccccCCCCCCChHHHHHHHHHHHHHh------CCCEEEecCcccccCHHHHHHHHHHHHHh-hcCC-eEEEEeeeh
Confidence 011112244455699999999999999999 99999999999999 33333 44433 3344 478899999
Q ss_pred HHHHHHHHHH
Q psy14062 311 KALEPELRKA 320 (388)
Q Consensus 311 ~~l~~~~d~~ 320 (388)
..++. +|++
T Consensus 549 StIrn-aD~I 557 (1228)
T KOG0055|consen 549 STIRN-ADKI 557 (1228)
T ss_pred hhhhc-cCEE
Confidence 99887 6654
No 326
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.86 E-value=1.3e-23 Score=220.81 Aligned_cols=194 Identities=13% Similarity=0.152 Sum_probs=131.1
Q ss_pred cEEEEEEEeeceEEecC-ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSYAG-YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~-~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
.+.+.+++ ++|++ ..++ +|+||+|++ |++++|+||||||||||++
T Consensus 334 ~i~~~~v~----~~y~~~~~~l--------~~i~~~i~~----------------------G~~~~ivG~sGsGKSTL~~ 379 (585)
T TIGR01192 334 AVEFRHIT----FEFANSSQGV--------FDVSFEAKA----------------------GQTVAIVGPTGAGKTTLIN 379 (585)
T ss_pred eEEEEEEE----EECCCCCccc--------cceeEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 46666666 56865 3344 499999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccc-ccCC-
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYE-IIPG- 230 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~-~~~~- 230 (388)
+|+ |+. ++.+|++.++|..+.-. +...+| +.+++++|++..++. +..++...... +..+++.. ....
T Consensus 380 ll~----g~~-~~~~G~i~~~g~~~~~~--~~~~~~-~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~a~~~~ 448 (585)
T TIGR01192 380 LLQ----RVY-DPTVGQILIDGIDINTV--TRESLR-KSIATVFQDAGLFNR-SIRENIRLGRE--GATDEEVYEAAKAA 448 (585)
T ss_pred HHc----cCC-CCCCCEEEECCEEhhhC--CHHHHH-hheEEEccCCccCcc-cHHHHHhcCCC--CCCHHHHHHHHHHh
Confidence 999 998 78899988877655322 222333 569999999887754 33332221110 00111000 0000
Q ss_pred ---ceE-EE-EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhh
Q psy14062 231 ---TDL-EI-ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKL 300 (388)
Q Consensus 231 ---~~l-~~-~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~ 300 (388)
..+ .+ .+.....+.....|||||+||+.|||+|.. +|+++||||||++| +.+.+.+.++.. +.
T Consensus 449 ~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~------~p~ililDEpts~LD~~~~~~i~~~l~~~~~-~~ 521 (585)
T TIGR01192 449 AAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK------NAPILVLDEATSALDVETEARVKNAIDALRK-NR 521 (585)
T ss_pred CcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CC
Confidence 000 00 011112345567899999999999999999 99999999999999 555566665533 33
Q ss_pred hHHHHHHHhHHHHHHHHHHHH
Q psy14062 301 TRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 301 ~~ii~vtH~l~~l~~~~d~~~ 321 (388)
+++++||+++.+. .+|++.
T Consensus 522 -tvI~isH~~~~~~-~~d~i~ 540 (585)
T TIGR01192 522 -TTFIIAHRLSTVR-NADLVL 540 (585)
T ss_pred -EEEEEEcChHHHH-cCCEEE
Confidence 5999999998885 477653
No 327
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=7.3e-24 Score=186.21 Aligned_cols=165 Identities=15% Similarity=0.154 Sum_probs=123.2
Q ss_pred cccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCcc
Q psy14062 104 QISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYR 183 (388)
Q Consensus 104 ~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~ 183 (388)
++||++.+ |+++.|.||||||||||||+|+ |+. ++.+|.+.+.+..+...-
T Consensus 20 ~L~f~l~~----------------------Ge~~~i~G~NG~GKTtLLRila----GLl-~p~~G~v~~~~~~i~~~~-- 70 (209)
T COG4133 20 DLSFTLNA----------------------GEALQITGPNGAGKTTLLRILA----GLL-RPDAGEVYWQGEPIQNVR-- 70 (209)
T ss_pred ceeEEEcC----------------------CCEEEEECCCCCcHHHHHHHHH----ccc-CCCCCeEEecCCCCccch--
Confidence 99999999 9999999999999999999999 999 778999888765432111
Q ss_pred chhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHH
Q psy14062 184 ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVL 263 (388)
Q Consensus 184 ~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL 263 (388)
... ...+-|+-|.+...+.+++.|+..++..+++..+.. .+. ..+..+++....+.++++||-||++|+++|+..
T Consensus 71 -~~~-~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~--~i~-~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ 145 (209)
T COG4133 71 -ESY-HQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAA--TIW-EALAQVGLAGLEDLPVGQLSAGQQRRVALARLW 145 (209)
T ss_pred -hhH-HHHHHHhhccccccchhhHHHHHHHHHHHhCCCchh--hHH-HHHHHcCcccccccchhhcchhHHHHHHHHHHH
Confidence 111 244677878888888888888877766555431111 111 133344556667889999999999999999999
Q ss_pred HHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHh
Q psy14062 264 RDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETD 309 (388)
Q Consensus 264 ~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~ 309 (388)
.. .+++.|||||+++| ..+..++......+.. |+..||.
T Consensus 146 ls------~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGi-VllttHq 189 (209)
T COG4133 146 LS------PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGI-VLLTTHQ 189 (209)
T ss_pred cC------CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCE-EEEecCC
Confidence 99 89999999999999 3344455555555554 7777775
No 328
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.86 E-value=1.4e-22 Score=217.54 Aligned_cols=199 Identities=18% Similarity=0.215 Sum_probs=128.1
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+++++ .+|.+..- ..+|+|+||+|++ |+.++|+||||||||||+++
T Consensus 478 ~I~~~nVs----f~Y~~~~~-----~~vL~~isl~i~~----------------------Ge~vaIvG~SGsGKSTLl~l 526 (711)
T TIGR00958 478 LIEFQDVS----FSYPNRPD-----VPVLKGLTFTLHP----------------------GEVVALVGPSGSGKSTVAAL 526 (711)
T ss_pred eEEEEEEE----EECCCCCC-----CccccCceEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 35555555 46864210 0135599999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccc-ccCC--
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYE-IIPG-- 230 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~-~~~~-- 230 (388)
|+ |+. ++.+|++.++|..+.-. +...+| +.+++++|++..|...-..++.+.. . +..+++.. ....
T Consensus 527 L~----gl~-~p~~G~I~idg~~i~~~--~~~~lr-~~i~~v~Q~~~lF~gTIreNI~~g~-~--~~~~e~i~~al~~a~ 595 (711)
T TIGR00958 527 LQ----NLY-QPTGGQVLLDGVPLVQY--DHHYLH-RQVALVGQEPVLFSGSVRENIAYGL-T--DTPDEEIMAAAKAAN 595 (711)
T ss_pred HH----hcc-CCCCCEEEECCEEHHhc--CHHHHH-hhceEEecCccccccCHHHHHhcCC-C--CCCHHHHHHHHHHcC
Confidence 99 999 78899998888765432 223344 5699999999887653333332221 0 01111100 0000
Q ss_pred --ceEE-E-EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-HHHHhhhHHHHHHhhhHHHH
Q psy14062 231 --TDLE-I-ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 231 --~~l~-~-~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-e~i~~~l~el~~e~~~~ii~ 305 (388)
..+. + .+....-+.....|||||+||++|||+|.. +|+++||||||++| .+....+.+.......|+++
T Consensus 596 l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~------~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIi 669 (711)
T TIGR00958 596 AHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR------KPRVLILDEATSALDAECEQLLQESRSRASRTVLL 669 (711)
T ss_pred CHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc------CCCEEEEEccccccCHHHHHHHHHhhccCCCeEEE
Confidence 0000 0 011111234456799999999999999999 99999999999999 33333333322222336999
Q ss_pred HHHhHHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKAV 321 (388)
Q Consensus 306 vtH~l~~l~~~~d~~~ 321 (388)
+||+++.+.. +|++.
T Consensus 670 ItHrl~~i~~-aD~Ii 684 (711)
T TIGR00958 670 IAHRLSTVER-ADQIL 684 (711)
T ss_pred EeccHHHHHh-CCEEE
Confidence 9999987654 67653
No 329
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.86 E-value=2.1e-23 Score=182.45 Aligned_cols=206 Identities=17% Similarity=0.167 Sum_probs=142.7
Q ss_pred cEEEEEEEeeceEEecCceee-cCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTL-GPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l-~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
.+.+.+++ |+|..+..| +.-...|++.|||++.+ |+..||||.||||||||.+
T Consensus 4 LLeV~nLs----KtF~~~~~lf~r~~~~AV~~vSFtL~~----------------------~QTlaiIG~NGSGKSTLak 57 (267)
T COG4167 4 LLEVRNLS----KTFRYRTGLFRRQTVEAVKPVSFTLRE----------------------GQTLAIIGENGSGKSTLAK 57 (267)
T ss_pred hhhhhhhh----hhhhhhhhhhhhhhhhcccceEEEecC----------------------CcEEEEEccCCCcHhHHHH
Confidence 34555666 777655432 22235689999999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCC--CCcceEEEEEEecccc-CCCCcc-cccc
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQV--GGVSRCSVAIHFAQII-DKPNEE-YEII 228 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~--~~~~~~eV~~~~~~~~-~~~~~~-~~~~ 228 (388)
+|+ |++ ||.||.+.++|..+.. | ....|++.|.++||+|+.. |.+..-.+.-...++. +..... ...+
T Consensus 58 Mla----Gmi-~PTsG~il~n~~~L~~-~--Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i 129 (267)
T COG4167 58 MLA----GMI-EPTSGEILINDHPLHF-G--DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQI 129 (267)
T ss_pred HHh----ccc-CCCCceEEECCccccc-c--chHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHH
Confidence 999 999 8899999999876542 2 2346788899999998743 3332222221111111 001000 0011
Q ss_pred CCceEEEEEE-eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhH
Q psy14062 229 PGTDLEIART-AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTR 302 (388)
Q Consensus 229 ~~~~l~~~r~-~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ 302 (388)
. ..+...++ -+..+-.+..||-||+||+++||||.. .|.++|.||.+++| .++..++.++.++....
T Consensus 130 ~-~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL------~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiS 202 (267)
T COG4167 130 F-ETLRMVGLLPDHANYYPHMLAPGQKQRVALARALIL------RPKIIIADEALASLDMSMRSQLINLMLELQEKQGIS 202 (267)
T ss_pred H-HHHHHhccCccccccchhhcCchhHHHHHHHHHHhc------CCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCce
Confidence 0 11222222 123455677899999999999999999 99999999999998 67777888887765445
Q ss_pred HHHHHHhHHHHHHHHHHH
Q psy14062 303 VQLVETDLKALEPELRKA 320 (388)
Q Consensus 303 ii~vtH~l~~l~~~~d~~ 320 (388)
.+.|+.++..++..+|.+
T Consensus 203 yiYV~QhlG~iKHi~D~v 220 (267)
T COG4167 203 YIYVTQHIGMIKHISDQV 220 (267)
T ss_pred EEEEechhhHhhhhcccE
Confidence 777888888888887754
No 330
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.86 E-value=2e-23 Score=218.82 Aligned_cols=193 Identities=18% Similarity=0.196 Sum_probs=131.3
Q ss_pred EEEEEEEeeceEEec-CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 75 LIITKIVAFNFKSYA-GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 75 l~i~~l~~~~fksy~-~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
+.+.+++ .+|+ ++.+++ |+||++++ |+.+||+|||||||||++++
T Consensus 329 I~f~~vs----f~y~~~~~vl~--------~is~~i~~----------------------Ge~vaiVG~sGsGKSTl~~L 374 (567)
T COG1132 329 IEFENVS----FSYPGKKPVLK--------DISFSIEP----------------------GEKVAIVGPSGSGKSTLIKL 374 (567)
T ss_pred EEEEEEE----EEcCCCCcccc--------CceEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 4455555 4588 456654 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cccC---
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EIIP--- 229 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~--- 229 (388)
++ ++. ++.+|++.++|.++.-. ....+| +.+++|+|++.+|.. +..++..+... +..+++. +...
T Consensus 375 L~----r~~-~~~~G~I~idg~dI~~i--~~~~lr-~~I~~V~Qd~~LF~~-TI~~NI~~g~~--~at~eei~~a~k~a~ 443 (567)
T COG1132 375 LL----RLY-DPTSGEILIDGIDIRDI--SLDSLR-KRIGIVSQDPLLFSG-TIRENIALGRP--DATDEEIEEALKLAN 443 (567)
T ss_pred Hh----ccC-CCCCCeEEECCEehhhc--CHHHHH-HhccEEcccceeecc-cHHHHHhcCCC--CCCHHHHHHHHHHhC
Confidence 99 888 66799999977666532 233455 459999999988864 33333222211 0011110 0000
Q ss_pred -CceEEEE--EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhh
Q psy14062 230 -GTDLEIA--RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLT 301 (388)
Q Consensus 230 -~~~l~~~--r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~ 301 (388)
.+.+.-. +....-+.....|||||+||++|||+|.. +|+++|||||||++ ..+.+.+.++.+ +.
T Consensus 444 ~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~------~~~ILILDEaTSalD~~tE~~I~~~l~~l~~-~r- 515 (567)
T COG1132 444 AHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR------NPPILILDEATSALDTETEALIQDALKKLLK-GR- 515 (567)
T ss_pred hHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc------CCCEEEEeccccccCHHhHHHHHHHHHHHhc-CC-
Confidence 0000000 11112245567899999999999999999 99999999999999 445556665553 33
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q psy14062 302 RVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 302 ~ii~vtH~l~~l~~~~d~~~ 321 (388)
|+++++|++..++. +|++.
T Consensus 516 T~iiIaHRlsti~~-aD~Ii 534 (567)
T COG1132 516 TTLIIAHRLSTIKN-ADRII 534 (567)
T ss_pred EEEEEeccHhHHHh-CCEEE
Confidence 46779999988887 77653
No 331
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.86 E-value=1.4e-22 Score=217.66 Aligned_cols=194 Identities=17% Similarity=0.197 Sum_probs=129.8
Q ss_pred cEEEEEEEeeceEEecC-ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSYAG-YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~-~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
.+.+.+++ .+|++ +.+ |+|+||+|++ |+.++|+||||||||||++
T Consensus 473 ~I~~~~vs----f~y~~~~~i--------L~~isl~i~~----------------------G~~vaIvG~SGsGKSTLlk 518 (708)
T TIGR01193 473 DIVINDVS----YSYGYGSNI--------LSDISLTIKM----------------------NSKTTIVGMSGSGKSTLAK 518 (708)
T ss_pred cEEEEEEE----EEcCCCCcc--------eeceeEEECC----------------------CCEEEEECCCCCCHHHHHH
Confidence 45666666 56863 344 4599999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cccC--
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EIIP-- 229 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~-- 229 (388)
+|+ |+. ++.+|++.++|.++.-. +...+| +.+++++|++.+|+. +..++...... .+.++++. +...
T Consensus 519 lL~----gl~-~p~~G~I~idg~~i~~~--~~~~lr-~~i~~v~Q~~~lf~g-TI~eNi~l~~~-~~~~~~~i~~a~~~a 588 (708)
T TIGR01193 519 LLV----GFF-QARSGEILLNGFSLKDI--DRHTLR-QFINYLPQEPYIFSG-SILENLLLGAK-ENVSQDEIWAACEIA 588 (708)
T ss_pred HHh----ccC-CCCCcEEEECCEEHHHc--CHHHHH-HheEEEecCceehhH-HHHHHHhccCC-CCCCHHHHHHHHHHh
Confidence 999 998 77899999988766432 233445 469999999988865 33333222100 00011110 0000
Q ss_pred C--ceEE-E-EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhh
Q psy14062 230 G--TDLE-I-ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKL 300 (388)
Q Consensus 230 ~--~~l~-~-~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~ 300 (388)
. ..+. + .+....-+.....|||||+||+.|||+|.. +|+++||||||++| +.+...+.++ .+.
T Consensus 589 ~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~------~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~ 660 (708)
T TIGR01193 589 EIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT------DSKVLILDESTSNLDTITEKKIVNNLLNL--QDK 660 (708)
T ss_pred CCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCccccCCHHHHHHHHHHHHHh--cCC
Confidence 0 0000 0 011111234456799999999999999999 99999999999999 4444555443 233
Q ss_pred hHHHHHHHhHHHHHHHHHHHH
Q psy14062 301 TRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 301 ~~ii~vtH~l~~l~~~~d~~~ 321 (388)
|+++++|+++.++ .+|++.
T Consensus 661 -T~IiitHr~~~~~-~~D~i~ 679 (708)
T TIGR01193 661 -TIIFVAHRLSVAK-QSDKII 679 (708)
T ss_pred -EEEEEecchHHHH-cCCEEE
Confidence 5899999998764 477653
No 332
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.85 E-value=1.1e-22 Score=214.29 Aligned_cols=196 Identities=17% Similarity=0.203 Sum_probs=129.2
Q ss_pred cEEEEEEEeeceEEecC-ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSYAG-YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~-~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
.+.+.+++ .+|.+ ..+ |+|+||++++ |+.++|+||||||||||++
T Consensus 334 ~I~~~~vs----f~y~~~~~i--------L~~inl~i~~----------------------G~~v~IvG~sGsGKSTLl~ 379 (588)
T PRK13657 334 AVEFDDVS----FSYDNSRQG--------VEDVSFEAKP----------------------GQTVAIVGPTGAGKSTLIN 379 (588)
T ss_pred eEEEEEEE----EEeCCCCce--------ecceeEEECC----------------------CCEEEEECCCCCCHHHHHH
Confidence 35555555 45864 344 4499999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccc-ccC--
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYE-IIP-- 229 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~-~~~-- 229 (388)
+|+ |+. ++.+|.+.++|..+... ....+| +.++|++|++..+++. ..++...... +..+++.. ...
T Consensus 380 lL~----gl~-~p~~G~I~i~g~~i~~~--~~~~~r-~~i~~v~Q~~~lf~~T-i~~Ni~~~~~--~~~d~~i~~al~~~ 448 (588)
T PRK13657 380 LLQ----RVF-DPQSGRILIDGTDIRTV--TRASLR-RNIAVVFQDAGLFNRS-IEDNIRVGRP--DATDEEMRAAAERA 448 (588)
T ss_pred HHh----cCc-CCCCCEEEECCEEhhhC--CHHHHH-hheEEEecCccccccc-HHHHHhcCCC--CCCHHHHHHHHHHh
Confidence 999 999 77799988888665422 222334 5699999999887653 3333222210 01111100 000
Q ss_pred --CceEEE--EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhh
Q psy14062 230 --GTDLEI--ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKL 300 (388)
Q Consensus 230 --~~~l~~--~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~ 300 (388)
...+.- .+....-+.....|||||+||++|||+|.. +|+++||||||++| +.+.+.+.++.. +.
T Consensus 449 ~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~------~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~~ 521 (588)
T PRK13657 449 QAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLK------DPPILILDEATSALDVETEAKVKAALDELMK-GR 521 (588)
T ss_pred CHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-CC
Confidence 000000 011111233455799999999999999999 99999999999999 444455554432 23
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 301 TRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 301 ~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+++++||++..++ .+|++...
T Consensus 522 -tvIiitHr~~~~~-~~D~ii~l 542 (588)
T PRK13657 522 -TTFIIAHRLSTVR-NADRILVF 542 (588)
T ss_pred -EEEEEEecHHHHH-hCCEEEEE
Confidence 5999999997764 57775444
No 333
>KOG0933|consensus
Probab=99.85 E-value=3.9e-20 Score=193.06 Aligned_cols=252 Identities=27% Similarity=0.449 Sum_probs=174.8
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
|+|+.|.+.|||||+.++++..|+ ..|+||.|-||||||.+|..|
T Consensus 1 M~IkeiiLDGFKSYa~rTvI~~fD-----------------------------------p~FNAITGlNGSGKSNILDsI 45 (1174)
T KOG0933|consen 1 MHIKEIILDGFKSYATRTVISGFD-----------------------------------PQFNAITGLNGSGKSNILDSI 45 (1174)
T ss_pred CchhhhhhcchhcceeeeeccCCC-----------------------------------cccchhhcCCCCCchHHHHHH
Confidence 568889999999999999988787 889966666555555555544
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCcc-chhhhhccceeEecccCCCCCcceEEEEEEeccccC-CCCccccccCCce
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIID-KPNEEYEIIPGTD 232 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~-~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~-~~~~~~~~~~~~~ 232 (388)
+|++|.. ...+|+..+..+++.... .+.+.+.|.++|.+... .++-.++. ..+
T Consensus 46 ----------------------CFvLGI~nl~~VRA~nlqeLIyk~GQ-AGiTkAsVsVvFdNtdk~~SP~G~E~--h~E 100 (1174)
T KOG0933|consen 46 ----------------------CFVLGITNLSQVRASNLQELIYKNGQ-AGITKASVSVVFDNTDKARSPLGYEH--HDE 100 (1174)
T ss_pred ----------------------HHHHccchHHHHHHHHHHHHHHhcCc-ccceeEEEEEEecCCCcccCCCCccc--CCe
Confidence 4555553 355788877777665433 57899999999954211 11222332 348
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH------------HHHHh--hhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM------------EVLYG--KYDEERTE 298 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L------------e~i~~--~l~el~~e 298 (388)
+.+.|.+...+++-|.+||.-++-..+..++.++|+.+.+|.|||||+.+.-. |+.+| .+...+..
T Consensus 101 IsVtRqIv~gG~~KylINGh~a~~~~vq~lF~SVqLNvNNP~FLIMQGrITkVLNMKp~EILsMvEEAAGTrmye~kKe~ 180 (1174)
T KOG0933|consen 101 ISVTRQIVVGGTNKYLINGHLAQNSKVQDLFCSVQLNVNNPHFLIMQGRITKVLNMKPSEILSMVEEAAGTRMYENKKEA 180 (1174)
T ss_pred eEEEEEEEecCceeEEEcCeeCchhHHHHHHHHhcccCCCCceEEecccchhhhcCCcHHHHHHHHHhhcchhHHHHHHH
Confidence 99999998999999999999999999999999999999999999999776533 55554 22222211
Q ss_pred hhhHH-----------HH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14062 299 KLTRV-----------QL----VETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQEL 363 (388)
Q Consensus 299 ~~~~i-----------i~----vtH~l~~l~~~~d~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~el 363 (388)
...++ .+ |+-.+.-+.+......+|++..++++.+.+.+..+++............++.+.+..+
T Consensus 181 A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~i 260 (1174)
T KOG0933|consen 181 AEKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLSRICIAYEYLQAEEKRKNSAHEIEEMKDKI 260 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 12 3344677888888899999999999999998888887766655555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy14062 364 TANLESIKKCTDEMESAKTELKT 386 (388)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~ 386 (388)
..+.+......++++.+++++++
T Consensus 261 ~~l~e~~~k~~~ei~~le~~ike 283 (1174)
T KOG0933|consen 261 AKLDESLGKTDKEIESLEKEIKE 283 (1174)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Confidence 55555555555555555555444
No 334
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.85 E-value=1.3e-23 Score=197.08 Aligned_cols=198 Identities=17% Similarity=0.201 Sum_probs=111.0
Q ss_pred EEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 77 i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
|.+|.+.|||+|++..++.+|+ +++++|+||||||||||+++|+
T Consensus 1 i~~i~~~nfksy~~~~~~~~~~-----------------------------------~~~~~i~GpNGsGKStll~ai~- 44 (243)
T cd03272 1 IKQVIIQGFKSYKDQTVIEPFS-----------------------------------PKHNVVVGRNGSGKSNFFAAIR- 44 (243)
T ss_pred CcEEEEeCccCcccCcccccCC-----------------------------------CCcEEEECCCCCCHHHHHHHHH-
Confidence 4578999999999988887776 8899999999999999999999
Q ss_pred cccEEEcCCCCCcceee-hhhhhhcCccchhhhhccceeEecccCCCCCcceEEEE------EEecc--ccCC--CCccc
Q psy14062 157 RFNAIIGPNGSGKSNVI-DSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVA------IHFAQ--IIDK--PNEEY 225 (388)
Q Consensus 157 ~~ngIiGpngSGKs~i~-da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~------~~~~~--~~~~--~~~~~ 225 (388)
+++|+..++ .... ...+...|..... ....++++|+++.........++. ..... +++. .....
T Consensus 45 ---~~l~~~~~~-~~~~~~~~li~~~~~~~~-~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei 119 (243)
T cd03272 45 ---FVLSDEYTH-LREEQRQALLHEGSGPSV-MSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDV 119 (243)
T ss_pred ---HHHcCchhh-hhhhhHHHhEeCCCCCCC-ceEEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHH
Confidence 666444222 1111 0011111211111 123456666654321111101111 00000 0000 00000
Q ss_pred ----cc--cCC----------ceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH----
Q psy14062 226 ----EI--IPG----------TDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM---- 285 (388)
Q Consensus 226 ----~~--~~~----------~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L---- 285 (388)
.. ... ....+..+....+..+..|||||+||+.+|++|+... ...|+++|+|||+++|
T Consensus 120 ~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~--~~~~~illlDEp~~~ld~~~ 197 (243)
T cd03272 120 MNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQK--CDPAPFYLFDEIDAALDAQY 197 (243)
T ss_pred HHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhc--cCCCCEEEEECCccCCCHHH
Confidence 00 000 0000111111234678899999999999999997300 0147999999999999
Q ss_pred -HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 286 -EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 286 -e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
+.+...+.++++ + +++++++|. .++.+.+|++
T Consensus 198 ~~~~~~~l~~~~~-~-~~ii~~~h~-~~~~~~~d~i 230 (243)
T cd03272 198 RTAVANMIKELSD-G-AQFITTTFR-PELLEVADKF 230 (243)
T ss_pred HHHHHHHHHHHhC-C-CEEEEEecC-HHHHhhCCEE
Confidence 666667766654 3 346666776 4566777764
No 335
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.85 E-value=2.2e-22 Score=211.07 Aligned_cols=197 Identities=13% Similarity=0.168 Sum_probs=129.3
Q ss_pred cEEEEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
.+.+.+++ .+|.+ +.+ |+|+||+|++ |+.++|+||||||||||+
T Consensus 330 ~i~~~~v~----f~y~~~~~~i--------l~~inl~i~~----------------------G~~v~IvG~sGsGKSTLl 375 (571)
T TIGR02203 330 DVEFRNVT----FRYPGRDRPA--------LDSISLVIEP----------------------GETVALVGRSGSGKSTLV 375 (571)
T ss_pred eEEEEEEE----EEcCCCCCcc--------ccCeeEEecC----------------------CCEEEEECCCCCCHHHHH
Confidence 35555555 45754 334 4599999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccc-ccCC
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYE-IIPG 230 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~-~~~~ 230 (388)
++|+ |+. ++.+|++.++|..+.-.. ...+ ++.++|++|++..|... ..++...+.. .+..+++.. ....
T Consensus 376 ~lL~----gl~-~~~~G~I~i~g~~i~~~~--~~~~-~~~i~~v~Q~~~lf~~T-i~~Ni~~~~~-~~~~~~~i~~~l~~ 445 (571)
T TIGR02203 376 NLIP----RFY-EPDSGQILLDGHDLADYT--LASL-RRQVALVSQDVVLFNDT-IANNIAYGRT-EQADRAEIERALAA 445 (571)
T ss_pred HHHH----hcc-CCCCCeEEECCEeHHhcC--HHHH-HhhceEEccCccccccc-HHHHHhcCCC-CCCCHHHHHHHHHH
Confidence 9999 999 778999998886654322 2223 35699999999887653 3332222210 000111000 0000
Q ss_pred ----ceEE-E-EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 231 ----TDLE-I-ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 231 ----~~l~-~-~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
..+. + .+....-+.....|||||+||+++||+|.. +|+++||||||++| +.+...+.+..+.
T Consensus 446 ~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~------~~~illLDEpts~LD~~~~~~i~~~L~~~~~~- 518 (571)
T TIGR02203 446 AYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK------DAPILILDEATSALDNESERLVQAALERLMQG- 518 (571)
T ss_pred cChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc------CCCEEEEeCccccCCHHHHHHHHHHHHHHhCC-
Confidence 0000 0 011111123345799999999999999999 99999999999999 4455556554332
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
.++++|||+...+ ..+|++..+
T Consensus 519 -~tiIiitH~~~~~-~~~D~ii~l 540 (571)
T TIGR02203 519 -RTTLVIAHRLSTI-EKADRIVVM 540 (571)
T ss_pred -CEEEEEehhhHHH-HhCCEEEEE
Confidence 3699999998665 457765444
No 336
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.85 E-value=1.6e-22 Score=216.81 Aligned_cols=194 Identities=16% Similarity=0.166 Sum_probs=129.8
Q ss_pred cEEEEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
.+.+.+++ .+|.+ +.+ |+|+||+|++ |+.++|+||||||||||+
T Consensus 463 ~I~~~~vs----f~Y~~~~~~v--------L~~i~l~i~~----------------------G~~iaIvG~sGsGKSTLl 508 (694)
T TIGR03375 463 EIEFRNVS----FAYPGQETPA--------LDNVSLTIRP----------------------GEKVAIIGRIGSGKSTLL 508 (694)
T ss_pred eEEEEEEE----EEeCCCCccc--------eeeeeEEECC----------------------CCEEEEECCCCCCHHHHH
Confidence 35555555 46864 234 4599999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cccCC
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EIIPG 230 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~~ 230 (388)
++|+ |+. ++.+|++.++|.++... +...+| +.+++++|++..|+. +..++...... +..+++. .....
T Consensus 509 klL~----gl~-~p~~G~I~idg~~l~~~--~~~~lr-~~i~~v~Q~~~lf~~-TI~eNi~~~~~--~~~~~~i~~a~~~ 577 (694)
T TIGR03375 509 KLLL----GLY-QPTEGSVLLDGVDIRQI--DPADLR-RNIGYVPQDPRLFYG-TLRDNIALGAP--YADDEEILRAAEL 577 (694)
T ss_pred HHHh----cCC-CCCCceEEECCEEhhhC--CHHHHH-hccEEECCChhhhhh-hHHHHHhCCCC--CCCHHHHHHHHHH
Confidence 9999 999 77899999888765432 223344 569999999988765 33333222211 0011100 00000
Q ss_pred ----ceEEE--EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 231 ----TDLEI--ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 231 ----~~l~~--~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
..+.- .+....-+.....|||||+||++|||+|.. +|+++||||||++| +.+.+.+.++.+ +
T Consensus 578 ~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~------~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~ 650 (694)
T TIGR03375 578 AGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR------DPPILLLDEPTSAMDNRSEERFKDRLKRWLA-G 650 (694)
T ss_pred cChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-C
Confidence 00000 011111234456799999999999999999 99999999999999 445555655543 2
Q ss_pred hhHHHHHHHhHHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
. |++++||+++.+ +.+|++.
T Consensus 651 ~-T~iiItHrl~~~-~~~D~ii 670 (694)
T TIGR03375 651 K-TLVLVTHRTSLL-DLVDRII 670 (694)
T ss_pred C-EEEEEecCHHHH-HhCCEEE
Confidence 3 599999999876 4567654
No 337
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.85 E-value=7.1e-23 Score=214.78 Aligned_cols=179 Identities=18% Similarity=0.196 Sum_probs=121.7
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|+|+||++++ |+.++|+||||||||||+++|+ |+. ++.+|++.++|..+.-.
T Consensus 331 l~~i~~~i~~----------------------G~~~~ivG~sGsGKSTLl~ll~----g~~-~p~~G~i~~~g~~~~~~- 382 (569)
T PRK10789 331 LENVNFTLKP----------------------GQMLGICGPTGSGKSTLLSLIQ----RHF-DVSEGDIRFHDIPLTKL- 382 (569)
T ss_pred ccCeeEEECC----------------------CCEEEEECCCCCCHHHHHHHHh----ccc-CCCCCEEEECCEEHhhC-
Confidence 4599999999 9999999999999999999999 999 77899998887655422
Q ss_pred ccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccc-cCCc----eE-EE-EEEeeeCCCCeeeeCCccc
Q psy14062 182 YRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEI-IPGT----DL-EI-ARTAFYDNSSYYTLNGKKV 254 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~-~~~~----~l-~~-~r~~~~~~~~~~~LSgGq~ 254 (388)
+...+| +.+++++|++..++. +..++...... +..+..... .... .+ .+ .+.....+.....|||||+
T Consensus 383 -~~~~~~-~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~ 457 (569)
T PRK10789 383 -QLDSWR-SRLAVVSQTPFLFSD-TVANNIALGRP--DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQK 457 (569)
T ss_pred -CHHHHH-hheEEEccCCeeccc-cHHHHHhcCCC--CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHH
Confidence 222333 569999999888764 43333222110 001111000 0000 00 00 0111122345667999999
Q ss_pred cHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 255 HFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 255 qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
||+++||+|.. +|+++||||||++| +.+.+.+.++. .+. +++++||+++.+. .+|++..
T Consensus 458 qRi~lARall~------~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~-tii~itH~~~~~~-~~d~i~~ 521 (569)
T PRK10789 458 QRISIARALLL------NAEILILDDALSAVDGRTEHQILHNLRQWG-EGR-TVIISAHRLSALT-EASEILV 521 (569)
T ss_pred HHHHHHHHHhc------CCCEEEEECccccCCHHHHHHHHHHHHHHh-CCC-EEEEEecchhHHH-cCCEEEE
Confidence 99999999999 99999999999999 55666666554 233 5999999998765 4676533
No 338
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.85 E-value=1.2e-22 Score=212.19 Aligned_cols=190 Identities=14% Similarity=0.089 Sum_probs=122.8
Q ss_pred cEEEEEEEeeceEEecC-ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSYAG-YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~-~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
.+.+.+++ .+|.+ ..+| +|+||+|++ |+.++|+||||||||||++
T Consensus 322 ~i~~~~v~----f~y~~~~~~l--------~~i~~~i~~----------------------G~~~aivG~sGsGKSTL~~ 367 (547)
T PRK10522 322 TLELRNVT----FAYQDNGFSV--------GPINLTIKR----------------------GELLFLIGGNGSGKSTLAM 367 (547)
T ss_pred eEEEEEEE----EEeCCCCeEE--------ecceEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 45555555 56864 3354 499999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccc-ccCCc
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYE-IIPGT 231 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~-~~~~~ 231 (388)
+|+ |+. ++.+|++.++|..+.- .+...+| +.+++++|++..++.... ++. . +..+.... .....
T Consensus 368 ll~----g~~-~~~~G~i~~~g~~~~~--~~~~~~~-~~i~~v~q~~~lf~~ti~-~n~--~----~~~~~~~~~~~~~~ 432 (547)
T PRK10522 368 LLT----GLY-QPQSGEILLDGKPVTA--EQPEDYR-KLFSAVFTDFHLFDQLLG-PEG--K----PANPALVEKWLERL 432 (547)
T ss_pred HHh----CCC-CCCCeEEEECCEECCC--CCHHHHh-hheEEEecChhHHHHhhc-ccc--C----chHHHHHHHHHHHc
Confidence 999 998 7889999888765431 1222344 569999999877654322 110 0 00000000 00000
Q ss_pred eEE-EEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 232 DLE-IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 232 ~l~-~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
.+. ...... .......|||||+||++|||+|.. +|+++|+||||++| +.+...+.+..+....++++
T Consensus 433 ~l~~~~~~~~-~~~~G~~LSgGq~qRl~lARal~~------~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~ 505 (547)
T PRK10522 433 KMAHKLELED-GRISNLKLSKGQKKRLALLLALAE------ERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFA 505 (547)
T ss_pred CCchhhhccc-cCCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 000 000000 000135799999999999999999 99999999999999 33444444333222235999
Q ss_pred HHHhHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKA 320 (388)
Q Consensus 306 vtH~l~~l~~~~d~~ 320 (388)
+||+++.+. .+|++
T Consensus 506 itH~~~~~~-~~d~i 519 (547)
T PRK10522 506 ISHDDHYFI-HADRL 519 (547)
T ss_pred EEechHHHH-hCCEE
Confidence 999986544 56654
No 339
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.85 E-value=3.1e-22 Score=184.49 Aligned_cols=193 Identities=16% Similarity=0.166 Sum_probs=119.7
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCC-CCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPP-KGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
|.+..|++.||++|.+...+ +|... . |++++|+||||||||||+++
T Consensus 1 m~~~~i~l~nf~~y~~~~~i-----------~~~~~~~----------------------~~~~~i~G~NGsGKSTll~~ 47 (213)
T cd03279 1 MKPLKLELKNFGPFREEQVI-----------DFTGLDN----------------------NGLFLICGPTGAGKSTILDA 47 (213)
T ss_pred CEEEEEEEECCcCcCCceEE-----------eCCCCCc----------------------cCEEEEECCCCCCHHHHHHH
Confidence 45778999999999876543 35433 3 78999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceE
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l 233 (388)
|++ ++.|+. ++..... ......... .....++++|+.+.. ...+...+ +.......... .+
T Consensus 48 i~~---~l~g~~-~~~~~~~-~~~~~~~~~---~~~~~v~~~f~~~~~-----~~~~~r~~----gl~~~~~~~~~--~l 108 (213)
T cd03279 48 ITY---ALYGKT-PRYGRQE-NLRSVFAPG---EDTAEVSFTFQLGGK-----KYRVERSR----GLDYDQFTRIV--LL 108 (213)
T ss_pred hee---eEecCc-cccccch-hHHHHhcCC---CccEEEEEEEEECCe-----EEEEEEec----CCCHHHHHHhh--hh
Confidence 995 344554 2322211 111111111 122458888887532 11222211 11111111000 01
Q ss_pred EEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcC----CCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHH
Q psy14062 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHG----VDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQ 304 (388)
Q Consensus 234 ~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~G----i~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii 304 (388)
.........+.++..||+||+||+++|++|+..- .+..+|+++|+|||+++| +.+...+.++++++. +++
T Consensus 109 ~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~-tii 187 (213)
T cd03279 109 PQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENR-MVG 187 (213)
T ss_pred hhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCC-EEE
Confidence 1111223346778899999999999999998510 001146899999999999 666677777766554 599
Q ss_pred HHHHhHHHHHHHHHHH
Q psy14062 305 LVETDLKALEPELRKA 320 (388)
Q Consensus 305 ~vtH~l~~l~~~~d~~ 320 (388)
++||+++.+...++++
T Consensus 188 ~itH~~~~~~~~~~~i 203 (213)
T cd03279 188 VISHVEELKERIPQRL 203 (213)
T ss_pred EEECchHHHHhhCcEE
Confidence 9999999888776653
No 340
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.85 E-value=6.4e-23 Score=218.09 Aligned_cols=185 Identities=17% Similarity=0.097 Sum_probs=118.1
Q ss_pred cEEEEEEEeeceEEec-CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSYA-GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~-~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
.+.+.+++ ++|. ++.+++ |+||+|++ |++++|+||||||||||++
T Consensus 451 ~i~~~nv~----~~~~~~~~il~--------~isl~i~~----------------------Ge~~~IvG~nGsGKSTLl~ 496 (659)
T TIGR00954 451 GIKFENIP----LVTPNGDVLIE--------SLSFEVPS----------------------GNHLLICGPNGCGKSSLFR 496 (659)
T ss_pred eEEEEeeE----EECCCCCeeee--------cceEEECC----------------------CCEEEEECCCCCCHHHHHH
Confidence 45556665 5674 445554 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccC--CCCccccccCC
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIID--KPNEEYEIIPG 230 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~--~~~~~~~~~~~ 230 (388)
+|+ |+. |+.+|.+.+. + ++.+++++|++..++. +..++........+ ......+...
T Consensus 497 lL~----Gl~-~~~~G~i~~~-------~-------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~- 555 (659)
T TIGR00954 497 ILG----ELW-PVYGGRLTKP-------A-------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLE- 555 (659)
T ss_pred HHh----CCC-CCCCCeEeec-------C-------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHH-
Confidence 999 988 8888986442 1 2469999999877665 44433222110000 0000000000
Q ss_pred ceEEEEEEeeeC---------CCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-HHHHhhhHHHHHHhh
Q psy14062 231 TDLEIARTAFYD---------NSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-EVLYGKYDEERTEKL 300 (388)
Q Consensus 231 ~~l~~~r~~~~~---------~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-e~i~~~l~el~~e~~ 300 (388)
..+...++.... ......|||||+||+.||++|.. +|+++||||||++| .+....+.+..++..
T Consensus 556 ~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~------~p~illLDEpts~LD~~~~~~l~~~l~~~~ 629 (659)
T TIGR00954 556 QILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYH------KPQFAILDECTSAVSVDVEGYMYRLCREFG 629 (659)
T ss_pred HHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHc------CCCEEEEeCCccCCCHHHHHHHHHHHHHcC
Confidence 000000111000 11246899999999999999999 99999999999999 222222222222223
Q ss_pred hHHHHHHHhHHHHHHHHHHH
Q psy14062 301 TRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 301 ~~ii~vtH~l~~l~~~~d~~ 320 (388)
.++++++|+++.+ +.+|++
T Consensus 630 ~tvI~isH~~~~~-~~~d~i 648 (659)
T TIGR00954 630 ITLFSVSHRKSLW-KYHEYL 648 (659)
T ss_pred CEEEEEeCchHHH-HhCCEE
Confidence 3599999999875 456654
No 341
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.85 E-value=4.2e-22 Score=209.18 Aligned_cols=195 Identities=13% Similarity=0.194 Sum_probs=129.2
Q ss_pred cEEEEEEEeeceEEecC---ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 74 RLIITKIVAFNFKSYAG---YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~---~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
.+.+++++ .+|.+ +.+ |+|+||++++ |+.++|+||||||||||
T Consensus 337 ~i~~~~v~----f~y~~~~~~~i--------L~~inl~i~~----------------------Ge~i~IvG~sGsGKSTL 382 (576)
T TIGR02204 337 EIEFEQVN----FAYPARPDQPA--------LDGLNLTVRP----------------------GETVALVGPSGAGKSTL 382 (576)
T ss_pred eEEEEEEE----EECCCCCCCcc--------ccceeEEecC----------------------CCEEEEECCCCCCHHHH
Confidence 45555555 45853 234 4599999999 99999999999999999
Q ss_pred HhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cccC
Q psy14062 151 IDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EIIP 229 (388)
Q Consensus 151 l~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~ 229 (388)
+++|+ |+. ++.+|.+.++|..+... ....+| +.+++++|++..++..-..++.+.. . +..+++. ....
T Consensus 383 lklL~----gl~-~p~~G~I~i~g~~i~~~--~~~~~~-~~i~~~~Q~~~lf~~Ti~~Ni~~~~-~--~~~~~~~~~~l~ 451 (576)
T TIGR02204 383 FQLLL----RFY-DPQSGRILLDGVDLRQL--DPAELR-ARMALVPQDPVLFAASVMENIRYGR-P--DATDEEVEAAAR 451 (576)
T ss_pred HHHHH----hcc-CCCCCEEEECCEEHHhc--CHHHHH-HhceEEccCCccccccHHHHHhcCC-C--CCCHHHHHHHHH
Confidence 99999 999 77899988887655422 222344 4699999999887654333332211 0 0011100 0000
Q ss_pred C----ceEEEE--EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 230 G----TDLEIA--RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 230 ~----~~l~~~--r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
. ..+... +....-+.....|||||+||+++||++.. +|+++|+||||++| +.+.+.+.++.+
T Consensus 452 ~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~------~~~ililDEpts~lD~~~~~~i~~~l~~~~~- 524 (576)
T TIGR02204 452 AAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK------DAPILLLDEATSALDAESEQLVQQALETLMK- 524 (576)
T ss_pred HcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh------CCCeEEEeCcccccCHHHHHHHHHHHHHHhC-
Confidence 0 000000 11111133456799999999999999999 99999999999999 445555655533
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
+. +++++||++..+. .+|++..
T Consensus 525 ~~-t~IiitH~~~~~~-~~d~vi~ 546 (576)
T TIGR02204 525 GR-TTLIIAHRLATVL-KADRIVV 546 (576)
T ss_pred CC-EEEEEecchHHHH-hCCEEEE
Confidence 33 6999999997764 5776533
No 342
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.84 E-value=2.1e-22 Score=210.66 Aligned_cols=195 Identities=10% Similarity=0.077 Sum_probs=123.6
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.+++ ++|++... ....+|+|+||++++ |++++|+||||||||||+++
T Consensus 337 ~i~~~~v~----f~y~~~~~---~~~~~l~~vs~~i~~----------------------G~~~aivG~sGsGKSTl~~l 387 (555)
T TIGR01194 337 SIELKDVH----MNPKAPEG---SEGFALGPIDLRIAQ----------------------GDIVFIVGENGCGKSTLAKL 387 (555)
T ss_pred eEEEEEEE----EEeCCCCC---CcCceeccceEEEcC----------------------CcEEEEECCCCCCHHHHHHH
Confidence 45566666 66875310 001124599999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cccCCce
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EIIPGTD 232 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~~~~ 232 (388)
|+ |+. ++.+|++.++|..+.-. ....+| +.+++++|++..|......+ .. . +...+.. .......
T Consensus 388 l~----g~~-~p~~G~i~~~g~~i~~~--~~~~~~-~~i~~v~q~~~lf~~ti~~n-~~-~----~~~~~~~~~~~~~~~ 453 (555)
T TIGR01194 388 FC----GLY-IPQEGEILLDGAAVSAD--SRDDYR-DLFSAIFADFHLFDDLIGPD-EG-E----HASLDNAQQYLQRLE 453 (555)
T ss_pred Hh----CCC-CCCCcEEEECCEECCCC--CHHHHH-hhCcEEccChhhhhhhhhcc-cc-c----chhHHHHHHHHHHcC
Confidence 99 988 77899998877654311 122333 46999999988775533222 10 0 0000000 0000000
Q ss_pred E-E-EEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhh-HHHHHHhhhHHH
Q psy14062 233 L-E-IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKY-DEERTEKLTRVQ 304 (388)
Q Consensus 233 l-~-~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l-~el~~e~~~~ii 304 (388)
+ . +.... ..-.....|||||+||++|||+|.. +|+++|+||||++| +.+.+.+ ..++..+. +++
T Consensus 454 l~~~~~~lp-~g~~t~~~LSgGq~qRlalaRall~------~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~-tii 525 (555)
T TIGR01194 454 IADKVKIED-GGFSTTTALSTGQQKRLALICAWLE------DRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGK-TII 525 (555)
T ss_pred Cchhhcccc-cccCCcccCCHHHHHHHHHHHHHHc------CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC-EEE
Confidence 0 0 00000 0111236799999999999999999 99999999999999 3333333 23333344 599
Q ss_pred HHHHhHHHHHHHHHHH
Q psy14062 305 LVETDLKALEPELRKA 320 (388)
Q Consensus 305 ~vtH~l~~l~~~~d~~ 320 (388)
++||+++.+. .+|++
T Consensus 526 iisH~~~~~~-~~d~i 540 (555)
T TIGR01194 526 IISHDDQYFE-LADQI 540 (555)
T ss_pred EEeccHHHHH-hCCEE
Confidence 9999987653 56654
No 343
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.84 E-value=1.5e-22 Score=216.90 Aligned_cols=196 Identities=16% Similarity=0.188 Sum_probs=130.7
Q ss_pred cEEEEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
.+.+.+++ .+|++ +.+ |+|+||+|++ |+.++|+||||||||||+
T Consensus 455 ~i~~~~vs----f~y~~~~~~i--------l~~i~l~i~~----------------------G~~vaivG~sGsGKSTL~ 500 (694)
T TIGR01846 455 AITFENIR----FRYAPDSPEV--------LSNLNLDIKP----------------------GEFIGIVGPSGSGKSTLT 500 (694)
T ss_pred eEEEEEEE----EEcCCCCccc--------cccceEEECC----------------------CCEEEEECCCCCCHHHHH
Confidence 45566665 46853 334 4599999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cccCC
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EIIPG 230 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~~ 230 (388)
++|+ |+. ++.+|++.++|..+.-. +...+| +.+++++|++..++. +..++...... +...... +....
T Consensus 501 ~ll~----g~~-~p~~G~I~idg~~i~~~--~~~~~r-~~i~~v~q~~~lf~~-ti~eNi~~~~~--~~~~~~i~~a~~~ 569 (694)
T TIGR01846 501 KLLQ----RLY-TPQHGQVLVDGVDLAIA--DPAWLR-RQMGVVLQENVLFSR-SIRDNIALCNP--GAPFEHVIHAAKL 569 (694)
T ss_pred HHHh----cCC-CCCCceEEECCEehhhC--CHHHHH-HhCeEEccCCeehhh-hHHHHHhcCCC--CCCHHHHHHHHHH
Confidence 9999 998 77799999888765322 223345 469999999888765 33332221110 0000000 00000
Q ss_pred ----ceEE-E-EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 231 ----TDLE-I-ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 231 ----~~l~-~-~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
..+. + .+....-+.....|||||+||+++||+|.. +|+++||||||++| +.+.+.+.++.. +
T Consensus 570 ~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~------~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~ 642 (694)
T TIGR01846 570 AGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG------NPRILIFDEATSALDYESEALIMRNMREICR-G 642 (694)
T ss_pred cChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh------CCCEEEEECCCcCCCHHHHHHHHHHHHHHhC-C
Confidence 0000 0 011111234456899999999999999999 99999999999999 555566665532 3
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
. +++++||+++.+.. +|++...
T Consensus 643 ~-t~i~itH~~~~~~~-~d~ii~l 664 (694)
T TIGR01846 643 R-TVIIIAHRLSTVRA-CDRIIVL 664 (694)
T ss_pred C-EEEEEeCChHHHHh-CCEEEEE
Confidence 3 59999999988764 7765433
No 344
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=6.5e-23 Score=177.36 Aligned_cols=207 Identities=18% Similarity=0.166 Sum_probs=142.3
Q ss_pred cEEEEEEEeeceEEec----CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhh
Q psy14062 74 RLIITKIVAFNFKSYA----GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSN 149 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~----~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKST 149 (388)
.+...++. |+|- +-..| ++|++|||++.. |+++++=|||||||||
T Consensus 4 ~l~v~~~~----KtFtlH~q~Gi~L-----pV~~~vslsV~a----------------------GECvvL~G~SG~GKSt 52 (235)
T COG4778 4 PLNVSNVS----KTFTLHQQGGVRL-----PVLRNVSLSVNA----------------------GECVVLHGPSGSGKST 52 (235)
T ss_pred eeeeecch----hheEeeecCCEEe-----eeeeceeEEecC----------------------ccEEEeeCCCCCcHHH
Confidence 45556666 7662 22333 246699999999 9999999999999999
Q ss_pred HHhhhhhcccEEEcCCCCCcceeehhhhhhc--Cccch---hhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc
Q psy14062 150 VIDSMLFRFNAIIGPNGSGKSNVIDSMLFVF--GYRAS---KIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE 224 (388)
Q Consensus 150 Ll~~i~~~~ngIiGpngSGKs~i~da~i~vl--g~~~~---~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~ 224 (388)
|||++. +-+ .+++|++.+-...-|+. ...+. ..|++.+|||.|.-...|.....+|......-.+...+.
T Consensus 53 llr~LY----aNY-~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~ 127 (235)
T COG4778 53 LLRSLY----ANY-LPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREV 127 (235)
T ss_pred HHHHHH----hcc-CCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHH
Confidence 999999 877 55799998876655543 22222 367888999988765556555555544321111111111
Q ss_pred ccccCCceEEEEEEee-eCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 225 YEIIPGTDLEIARTAF-YDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 225 ~~~~~~~~l~~~r~~~-~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
........+...+.-. .-.-.+.+.|||++||+.|||.|.. +.++|+|||||++| .-+.+++.+.+..
T Consensus 128 a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfiv------d~pILLLDEPTasLDa~Nr~vVveli~e~Ka~ 201 (235)
T COG4778 128 ARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIV------DYPILLLDEPTASLDATNRAVVVELIREAKAR 201 (235)
T ss_pred HHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhc------cCceEEecCCcccccccchHHHHHHHHHHHhc
Confidence 1100011111111111 1235678899999999999999999 88999999999999 6678899888887
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+.. ++-+=||-+.=+..+||...+
T Consensus 202 GaA-lvGIFHDeevre~vadR~~~~ 225 (235)
T COG4778 202 GAA-LVGIFHDEEVREAVADRLLDV 225 (235)
T ss_pred Cce-EEEeeccHHHHHHHhhheeec
Confidence 765 888889988888888887654
No 345
>PLN03073 ABC transporter F family; Provisional
Probab=99.84 E-value=3.2e-22 Score=213.54 Aligned_cols=187 Identities=13% Similarity=0.093 Sum_probs=117.9
Q ss_pred EEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEE--c
Q psy14062 86 KSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAII--G 163 (388)
Q Consensus 86 ksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIi--G 163 (388)
++|++..+|. |+||+|.. |++++|||||||||||||++|+ |.. |
T Consensus 185 ~~y~~~~ll~--------~isl~i~~----------------------Ge~~gLvG~NGsGKSTLLr~l~----g~~~~g 230 (718)
T PLN03073 185 ISVGGRDLIV--------DASVTLAF----------------------GRHYGLVGRNGTGKTTFLRYMA----MHAIDG 230 (718)
T ss_pred EEeCCCEEEE--------CCEEEECC----------------------CCEEEEECCCCCCHHHHHHHHc----CCCCCC
Confidence 6798877755 99999999 9999999999999999999999 643 4
Q ss_pred CCCCCcceeehhhhhhcCccc-------------hhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc------
Q psy14062 164 PNGSGKSNVIDSMLFVFGYRA-------------SKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE------ 224 (388)
Q Consensus 164 pngSGKs~i~da~i~vlg~~~-------------~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~------ 224 (388)
.+.+|++.+.+..+. |... ..++...+++++|.+..... +.......... .+.....
T Consensus 231 ~p~~g~I~~~~Q~~~--g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~-~~~~~~~~~~r~~ 306 (718)
T PLN03073 231 IPKNCQILHVEQEVV--GDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANK-DGVDKDAVSQRLE 306 (718)
T ss_pred CCCCCEEEEEeccCC--CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccc-cccchHHHHHHHH
Confidence 556788876554321 2110 11223346677776443211 11000000000 0000000
Q ss_pred --cccc-----------CCceEEEEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----
Q psy14062 225 --YEII-----------PGTDLEIARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM----- 285 (388)
Q Consensus 225 --~~~~-----------~~~~l~~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L----- 285 (388)
.+.. ....+...+.. ...++++..|||||+||+.||++|.. +|++|||||||++|
T Consensus 307 ~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~------~p~lLlLDEPt~~LD~~~~ 380 (718)
T PLN03073 307 EIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFI------EPDLLLLDEPTNHLDLHAV 380 (718)
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhc------CCCEEEEECCCCCCCHHHH
Confidence 0000 00011111111 12356788999999999999999999 99999999999999
Q ss_pred HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 286 EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 286 e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
+.+...+.++ +. +++++||+++.+...|+++
T Consensus 381 ~~l~~~L~~~---~~-tviivsHd~~~l~~~~d~i 411 (718)
T PLN03073 381 LWLETYLLKW---PK-TFIVVSHAREFLNTVVTDI 411 (718)
T ss_pred HHHHHHHHHc---CC-EEEEEECCHHHHHHhCCEE
Confidence 4444444443 33 5999999999999988764
No 346
>PRK13409 putative ATPase RIL; Provisional
Probab=99.84 E-value=2.4e-23 Score=218.11 Aligned_cols=183 Identities=17% Similarity=0.176 Sum_probs=120.9
Q ss_pred EEecCc-eeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcC
Q psy14062 86 KSYAGY-VTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGP 164 (388)
Q Consensus 86 ksy~~~-~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGp 164 (388)
++|+.. .+| .+++ .+.+ |++++|+|||||||||||++|+ |++ +
T Consensus 81 ~~yg~~~~~L--------~~l~-~i~~----------------------Gev~gLvG~NGaGKSTLlkiL~----G~l-~ 124 (590)
T PRK13409 81 HRYGVNGFKL--------YGLP-IPKE----------------------GKVTGILGPNGIGKTTAVKILS----GEL-I 124 (590)
T ss_pred EEecCCceeE--------ecCC-cCCC----------------------CCEEEEECCCCCCHHHHHHHHh----CCc-c
Confidence 678764 344 4999 8999 9999999999999999999999 998 5
Q ss_pred CCCCcce----eehhhhhhcCccchh----hh--hccceeEecccCCCCCc---ceEEEEEEeccccCCCCccccccCCc
Q psy14062 165 NGSGKSN----VIDSMLFVFGYRASK----IR--ANKLSVLMHKSDQVGGV---SRCSVAIHFAQIIDKPNEEYEIIPGT 231 (388)
Q Consensus 165 ngSGKs~----i~da~i~vlg~~~~~----lr--~~~i~~l~q~~~~~~~~---~~~eV~~~~~~~~~~~~~~~~~~~~~ 231 (388)
+.+|++. +....-++.|.+... ++ ..++++.+|.....|.. ++.++.. ..+ ...... .
T Consensus 125 p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~----~~~----~~~~~~-~ 195 (590)
T PRK13409 125 PNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLK----KVD----ERGKLD-E 195 (590)
T ss_pred CCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHH----hhh----HHHHHH-H
Confidence 6699975 111111122332211 11 12245555543333321 1111100 000 000000 1
Q ss_pred eEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHH
Q psy14062 232 DLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLV 306 (388)
Q Consensus 232 ~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~v 306 (388)
.+...++....++.+..|||||+||+.||++|+. +|+++||||||++| ..+...++++++ +. +++++
T Consensus 196 ~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~------~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~-tvIiv 267 (590)
T PRK13409 196 VVERLGLENILDRDISELSGGELQRVAIAAALLR------DADFYFFDEPTSYLDIRQRLNVARLIRELAE-GK-YVLVV 267 (590)
T ss_pred HHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CC-EEEEE
Confidence 1222233333567889999999999999999999 99999999999999 667778888776 54 59999
Q ss_pred HHhHHHHHHHHHHHH
Q psy14062 307 ETDLKALEPELRKAV 321 (388)
Q Consensus 307 tH~l~~l~~~~d~~~ 321 (388)
||+++.+...+|++.
T Consensus 268 sHd~~~l~~~~D~v~ 282 (590)
T PRK13409 268 EHDLAVLDYLADNVH 282 (590)
T ss_pred eCCHHHHHHhCCEEE
Confidence 999999999988763
No 347
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.84 E-value=1.7e-22 Score=229.74 Aligned_cols=182 Identities=16% Similarity=0.213 Sum_probs=123.2
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcC-----------------
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGP----------------- 164 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGp----------------- 164 (388)
|+|+||+|++ |+.+|||||||||||||+++|. +++-|
T Consensus 1184 L~~lsl~i~~----------------------G~~vAIVG~SGsGKSTl~~LL~----r~ydp~~~~~~~~~~~~~~~~~ 1237 (1466)
T PTZ00265 1184 YKDLTFSCDS----------------------KKTTAIVGETGSGKSTVMSLLM----RFYDLKNDHHIVFKNEHTNDMT 1237 (1466)
T ss_pred ccCeeEEEcC----------------------CCEEEEECCCCCCHHHHHHHHH----HhCCCccccccccccccccccc
Confidence 5599999999 9999999999999999999999 66633
Q ss_pred ------------------------------------CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceE
Q psy14062 165 ------------------------------------NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRC 208 (388)
Q Consensus 165 ------------------------------------ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~ 208 (388)
+.+|++.++|.++.-. +...+| +.+++|+|++.+|+.....
T Consensus 1238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~--~~~~lR-~~i~~V~Qep~LF~gTIre 1314 (1466)
T PTZ00265 1238 NEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDY--NLKDLR-NLFSIVSQEPMLFNMSIYE 1314 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhC--CHHHHH-hhccEeCCCCccccccHHH
Confidence 1589998888776532 234455 4699999999988654333
Q ss_pred EEEEEeccccCCCCcccc-cc---C-CceEEEE--EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccc
Q psy14062 209 SVAIHFAQIIDKPNEEYE-II---P-GTDLEIA--RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEP 281 (388)
Q Consensus 209 eV~~~~~~~~~~~~~~~~-~~---~-~~~l~~~--r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP 281 (388)
++.+.- . +..+++.. .. . ...+.-. +....-+.....|||||+||++|||||.. +|++||||||
T Consensus 1315 NI~~g~-~--~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr------~p~ILLLDEa 1385 (1466)
T PTZ00265 1315 NIKFGK-E--DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLR------EPKILLLDEA 1385 (1466)
T ss_pred HHhcCC-C--CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhc------CCCEEEEeCc
Confidence 333321 1 11111100 00 0 0000000 11111244567899999999999999999 9999999999
Q ss_pred hhhH-----HHHHhhhHHHHH-HhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 282 IAKM-----EVLYGKYDEERT-EKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 282 ~s~L-----e~i~~~l~el~~-e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
||+| ..|...+.++.. .+. |+++|+|++..++. +|++...
T Consensus 1386 TSaLD~~sE~~I~~~L~~~~~~~~~-TvIiIaHRlsti~~-aD~Ivvl 1431 (1466)
T PTZ00265 1386 TSSLDSNSEKLIEKTIVDIKDKADK-TIITIAHRIASIKR-SDKIVVF 1431 (1466)
T ss_pred ccccCHHHHHHHHHHHHHHhccCCC-EEEEEechHHHHHh-CCEEEEE
Confidence 9999 444555655532 233 59999999987754 6766444
No 348
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.84 E-value=2.9e-22 Score=227.91 Aligned_cols=203 Identities=12% Similarity=0.153 Sum_probs=132.2
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.+++ ++|++..- ..+|+||||+|++ |+++||+||||||||||+++
T Consensus 382 ~I~~~nVs----f~Y~~~~~-----~~vL~~isl~i~~----------------------Ge~vaIvG~SGsGKSTLl~l 430 (1466)
T PTZ00265 382 KIQFKNVR----FHYDTRKD-----VEIYKDLNFTLTE----------------------GKTYAFVGESGCGKSTILKL 430 (1466)
T ss_pred cEEEEEEE----EEcCCCCC-----CceeccceEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 35555555 67875310 0134599999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeeh-hhhhhcCccchhhhhccceeEecccCCCCCcceEEEE-EEeccc---------cCC--
Q psy14062 154 MLFRFNAIIGPNGSGKSNVID-SMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVA-IHFAQI---------IDK-- 220 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~d-a~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~-~~~~~~---------~~~-- 220 (388)
|+ |++ ++.+|++.++| ..+. ..+...+| +.+++|+|++.+|+. +..++. +..... +..
T Consensus 431 L~----gl~-~p~~G~I~i~~g~~i~--~~~~~~lr-~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~ 501 (1466)
T PTZ00265 431 IE----RLY-DPTEGDIIINDSHNLK--DINLKWWR-SKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDG 501 (1466)
T ss_pred HH----Hhc-cCCCCeEEEeCCcchh--hCCHHHHH-HhccEecccccchhc-cHHHHHHhcCCCccccchhcccccccc
Confidence 99 998 77899998854 4332 11223344 569999999988764 443322 211000 000
Q ss_pred -CC-------------------------c------------cc--cccCCc--eEEEE----EE----eeeCCCCeeeeC
Q psy14062 221 -PN-------------------------E------------EY--EIIPGT--DLEIA----RT----AFYDNSSYYTLN 250 (388)
Q Consensus 221 -~~-------------------------~------------~~--~~~~~~--~l~~~----r~----~~~~~~~~~~LS 250 (388)
.. . .. +.+... ...+. ++ ....+.....||
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LS 581 (1466)
T PTZ00265 502 NDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLS 581 (1466)
T ss_pred ccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCC
Confidence 00 0 00 000000 00000 00 001245677899
Q ss_pred CccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 251 GKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 251 gGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
|||+||++|||||.. +|++|||||||++| ..+...+.+++++...++++++|++..+ +.+|++...
T Consensus 582 GGQkQRiaIARAll~------~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl 652 (1466)
T PTZ00265 582 GGQKQRISIARAIIR------NPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTI-RYANTIFVL 652 (1466)
T ss_pred HHHHHHHHHHHHHhc------CCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEE
Confidence 999999999999999 99999999999999 5566677776543223599999999987 578876444
No 349
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.1e-22 Score=202.96 Aligned_cols=191 Identities=19% Similarity=0.258 Sum_probs=130.1
Q ss_pred EEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhccc
Q psy14062 80 IVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFN 159 (388)
Q Consensus 80 l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~n 159 (388)
+++.+| +|.+.+. .+|+|+||++.+ |+.+||+|+||||||||+..++
T Consensus 339 ~~~vsF-~y~~~~~------~~L~~~~l~l~~----------------------GEkvAIlG~SGsGKSTllqLl~---- 385 (573)
T COG4987 339 LRNVSF-TYPGQQT------KALKNFNLTLAQ----------------------GEKVAILGRSGSGKSTLLQLLA---- 385 (573)
T ss_pred ecccee-ecCCCcc------chhhccceeecC----------------------CCeEEEECCCCCCHHHHHHHHH----
Confidence 344445 5877652 235599999999 9999999999999999999999
Q ss_pred EEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCC----ceEE
Q psy14062 160 AIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPG----TDLE 234 (388)
Q Consensus 160 gIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~----~~l~ 234 (388)
|-. ++.+|++.+.|..+..+.. ..+| ..++++.|.+.+|... ..++... .+- +.++++ ++.... ..+.
T Consensus 386 ~~~-~~~~G~i~~~g~~~~~l~~--~~~~-e~i~vl~Qr~hlF~~T-lr~NL~l-A~~-~AsDEel~~aL~qvgL~~l~~ 458 (573)
T COG4987 386 GAW-DPQQGSITLNGVEIASLDE--QALR-ETISVLTQRVHLFSGT-LRDNLRL-ANP-DASDEELWAALQQVGLEKLLE 458 (573)
T ss_pred hcc-CCCCCeeeECCcChhhCCh--hhHH-HHHhhhccchHHHHHH-HHHHHhh-cCC-CCCHHHHHHHHHHcCHHHHHH
Confidence 777 6679999988877654432 2233 3589999988776432 2222211 100 101111 000000 0000
Q ss_pred E--EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 235 I--ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 235 ~--~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
- .+...+.+.....||||++||+.|||+|.+ +.+++||||||.+| +++..++.+..+. + ++++||
T Consensus 459 ~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~------dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~-k-Tll~vT 530 (573)
T COG4987 459 SAPDGLNTWLGEGGRRLSGGERRRLALARALLH------DAPLWLLDEPTEGLDPITERQVLALLFEHAEG-K-TLLMVT 530 (573)
T ss_pred hChhhhhchhccCCCcCCchHHHHHHHHHHHHc------CCCeEEecCCcccCChhhHHHHHHHHHHHhcC-C-eEEEEe
Confidence 0 022234466678899999999999999999 89999999999999 7788888776653 3 699999
Q ss_pred HhHHHHHHHHHH
Q psy14062 308 TDLKALEPELRK 319 (388)
Q Consensus 308 H~l~~l~~~~d~ 319 (388)
|++..++. +|+
T Consensus 531 HrL~~le~-~dr 541 (573)
T COG4987 531 HRLRGLER-MDR 541 (573)
T ss_pred cccccHhh-cCE
Confidence 99888775 344
No 350
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.84 E-value=2.2e-22 Score=199.34 Aligned_cols=173 Identities=20% Similarity=0.236 Sum_probs=126.3
Q ss_pred ccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhc
Q psy14062 101 EVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVF 180 (388)
Q Consensus 101 ~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vl 180 (388)
.|++|||++.+ |+..+||||||||||||.|+|. |+- ++.+|.+.++++++.-+
T Consensus 351 il~~isF~l~~----------------------G~~lgIIGPSgSGKSTLaR~lv----G~w-~p~~G~VRLDga~l~qW 403 (580)
T COG4618 351 ILKGISFALQA----------------------GEALGIIGPSGSGKSTLARLLV----GIW-PPTSGSVRLDGADLRQW 403 (580)
T ss_pred ceecceeEecC----------------------CceEEEECCCCccHHHHHHHHH----ccc-ccCCCcEEecchhhhcC
Confidence 46699999999 9999999999999999999999 999 88999999999987643
Q ss_pred CccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc--ccc--cC--CceEEEEEEee--eCCCCeeeeCCc
Q psy14062 181 GYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE--YEI--IP--GTDLEIARTAF--YDNSSYYTLNGK 252 (388)
Q Consensus 181 g~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~--~~~--~~--~~~l~~~r~~~--~~~~~~~~LSgG 252 (388)
. .+.-++.|||++|+-.+|++... ++..-|.. ..+.+ .+. .. ++.+--....+ .-+.....||||
T Consensus 404 d---~e~lG~hiGYLPQdVeLF~GTIa-eNIaRf~~---~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgG 476 (580)
T COG4618 404 D---REQLGRHIGYLPQDVELFDGTIA-ENIARFGE---EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGG 476 (580)
T ss_pred C---HHHhccccCcCcccceecCCcHH-HHHHhccc---cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCch
Confidence 3 22345679999999999887443 33332321 11110 000 00 00110001111 124556789999
Q ss_pred cccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHH
Q psy14062 253 KVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALE 314 (388)
Q Consensus 253 q~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~ 314 (388)
|+||..+||+|-- +|.++|||||=++| ..+...+.+.+.++.+ +++++|....+.
T Consensus 477 QRQRIaLARAlYG------~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~-vvviaHRPs~L~ 536 (580)
T COG4618 477 QRQRIALARALYG------DPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGT-VVVIAHRPSALA 536 (580)
T ss_pred HHHHHHHHHHHcC------CCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCE-EEEEecCHHHHh
Confidence 9999999999999 99999999999999 4466688888888875 899999876654
No 351
>KOG0964|consensus
Probab=99.84 E-value=2.4e-19 Score=186.40 Aligned_cols=222 Identities=25% Similarity=0.387 Sum_probs=165.9
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
|.|..+.+.||+||.+.+++.||+ ....+|||.||||||.|+.+|
T Consensus 1 MyIk~ViI~GFrSYrd~tvv~~fS-----------------------------------ph~NvIVGrNGSGKSNFF~AI 45 (1200)
T KOG0964|consen 1 MYIKQVIIKGFRSYRDETVVDPFS-----------------------------------PHHNVIVGRNGSGKSNFFHAI 45 (1200)
T ss_pred CceEEeeeccchhhccccccCCCC-----------------------------------CCcceEecCCCCCchhhHHHh
Confidence 578899999999999999999998 889999999999999999988
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhh-ccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceE
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRA-NKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~-~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l 233 (388)
-| ++ |+. ...+++ .+.|.+-+++. +..-.+.|.++|. +++... .+...++
T Consensus 46 rF----VL----SDe--------------y~hLk~E~R~gLlHEGsG--~~V~sA~VEIvF~----nsdnr~-~~~k~Ev 96 (1200)
T KOG0964|consen 46 RF----VL----SDE--------------YSHLKREERQGLLHEGSG--AMVMSASVEIVFD----NSDNRL-PRGKSEV 96 (1200)
T ss_pred hh----hc----ccc--------------hhhcCHHHHhhhhhcCCC--cceEEEEEEEEEe----Cccccc-CCCCCeE
Confidence 83 33 222 122222 23454443332 2345577888884 333322 2455789
Q ss_pred EEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH------------HHHHh--hhHHHHHHh
Q psy14062 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM------------EVLYG--KYDEERTEK 299 (388)
Q Consensus 234 ~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L------------e~i~~--~l~el~~e~ 299 (388)
.+.|++.. ....|+|.+.++.+-++..+|.+.|....+|.++|.|+.++.| .+++| .+.+.+++.
T Consensus 97 ~lrRtVGl-KKDeY~lD~k~Vtk~evvnLLESAGFSrsNPYyIV~QGkI~~La~akD~eRL~LLkeVaGtrvYeerreeS 175 (1200)
T KOG0964|consen 97 SLRRTVGL-KKDEYFLDNKMVTKGEVVNLLESAGFSRSNPYYIVPQGKINELANAKDSERLELLKEVAGTRVYEERREES 175 (1200)
T ss_pred EEEEeecc-cchhhhcccccccHHHHHHHHHhcCcccCCCceEeechhhHHhhcCCcHHHHHHHHHhcccchhHHhHHHH
Confidence 99998864 4668999999999999999999999999999999999999988 44444 232222221
Q ss_pred hh--------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14062 300 LT--------------RVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQ 361 (388)
Q Consensus 300 ~~--------------~ii~vtH~l~~l~~~~d~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 361 (388)
.. -+..+...|..++...+.+..|++++++.+.+++++|..++.+...++++++......-+
T Consensus 176 lkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e 251 (1200)
T KOG0964|consen 176 LKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPE 251 (1200)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccch
Confidence 11 123567778999999999999999999999999999999999988888877766554333
No 352
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.83 E-value=2.6e-23 Score=177.72 Aligned_cols=137 Identities=20% Similarity=0.257 Sum_probs=95.2
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|+||||+|.+ |++++|+||||||||||+++|+ |+. ++.+|.+.+++..+..
T Consensus 1 L~~v~~~i~~----------------------g~~~~i~G~nGsGKStLl~~l~----g~~-~~~~G~i~~~~~~~~~-- 51 (137)
T PF00005_consen 1 LKNVSLEIKP----------------------GEIVAIVGPNGSGKSTLLKALA----GLL-PPDSGSILINGKDISD-- 51 (137)
T ss_dssp EEEEEEEEET----------------------TSEEEEEESTTSSHHHHHHHHT----TSS-HESEEEEEETTEEGTT--
T ss_pred CCceEEEEcC----------------------CCEEEEEccCCCccccceeeec----ccc-cccccccccccccccc--
Confidence 5699999999 9999999999999999999999 888 6679998877665532
Q ss_pred ccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHH
Q psy14062 182 YRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAK 261 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~ 261 (388)
.....++..+++++|++..++..++.+. ...... ........... ......+.....||+||+||+.||+
T Consensus 52 -~~~~~~~~~i~~~~~~~~~~~~~tv~~~--~~~~~~---~~~l~~l~~~~----~~~~~~~~~~~~LS~Ge~~rl~la~ 121 (137)
T PF00005_consen 52 -IDIEELRRRIGYVPQDPQLFPGLTVREN--ESDERI---EEVLKKLGLED----LLDRKIGQRASSLSGGEKQRLALAR 121 (137)
T ss_dssp -SHHHHHHHTEEEEESSHCHHTTSBHHHH--HHHHHH---HHHHHHTTHGG----GTGSBGTSCGGGSCHHHHHHHHHHH
T ss_pred -cccccccccccccccccccccccccccc--cccccc---ccccccccccc----ccccccccccchhhHHHHHHHHHHH
Confidence 1122344679999999777766654332 000000 00000000000 0001224455999999999999999
Q ss_pred HHHHcCCCCCCCceEEeccchh
Q psy14062 262 VLRDHGVDLLNNRFLILQEPIA 283 (388)
Q Consensus 262 aL~~~Gi~~~~p~~LLlDEP~s 283 (388)
+|.. +|+++|+||||+
T Consensus 122 al~~------~~~llllDEPt~ 137 (137)
T PF00005_consen 122 ALLK------NPKLLLLDEPTN 137 (137)
T ss_dssp HHHT------TSSEEEEESTTT
T ss_pred HHHc------CCCEEEEeCCCC
Confidence 9999 999999999986
No 353
>PLN03232 ABC transporter C family member; Provisional
Probab=99.83 E-value=8.5e-22 Score=225.43 Aligned_cols=193 Identities=15% Similarity=0.227 Sum_probs=130.9
Q ss_pred cEEEEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
.+.+++++ .+|.. ..+ |+||||+|++ |+.+||+||||||||||+
T Consensus 1234 ~I~f~nVs----f~Y~~~~~~v--------L~~isl~I~~----------------------GekvaIVG~SGSGKSTL~ 1279 (1495)
T PLN03232 1234 SIKFEDVH----LRYRPGLPPV--------LHGLSFFVSP----------------------SEKVGVVGRTGAGKSSML 1279 (1495)
T ss_pred cEEEEEEE----EEECCCCCcc--------cccceEEEcC----------------------CCEEEEECCCCCCHHHHH
Confidence 45666666 56853 234 4599999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCC
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPG 230 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~ 230 (388)
++|. +++ ++.+|++.|+|.++.-.+ ...+| +++++|+|++.+|++ +..++...+.. ..+++ .+....
T Consensus 1280 ~lL~----rl~-~p~~G~I~IdG~di~~i~--~~~lR-~~i~iVpQdp~LF~g-TIr~NL~~~~~---~sdeei~~al~~ 1347 (1495)
T PLN03232 1280 NALF----RIV-ELEKGRIMIDDCDVAKFG--LTDLR-RVLSIIPQSPVLFSG-TVRFNIDPFSE---HNDADLWEALER 1347 (1495)
T ss_pred HHHh----CCC-cCCCceEEECCEEhhhCC--HHHHH-hhcEEECCCCeeeCc-cHHHHcCCCCC---CCHHHHHHHHHH
Confidence 9999 888 777999999987765332 23455 469999999998875 44433322211 11111 000000
Q ss_pred ----ceEE-E-EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 231 ----TDLE-I-ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 231 ----~~l~-~-~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
..+. + .+....-+.....|||||+||++|||||.. +|++||||||||+| ..|.+.+++..+ +
T Consensus 1348 a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr------~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~-~ 1420 (1495)
T PLN03232 1348 AHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR------RSKILVLDEATASVDVRTDSLIQRTIREEFK-S 1420 (1495)
T ss_pred cCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh------CCCEEEEECCcccCCHHHHHHHHHHHHHHcC-C
Confidence 0000 0 011111234456799999999999999999 99999999999999 333444444322 2
Q ss_pred hhHHHHHHHhHHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
.|+++|+|+++.+.. +|++.
T Consensus 1421 -~TvI~IAHRl~ti~~-~DrIl 1440 (1495)
T PLN03232 1421 -CTMLVIAHRLNTIID-CDKIL 1440 (1495)
T ss_pred -CEEEEEeCCHHHHHh-CCEEE
Confidence 369999999988876 67653
No 354
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.82 E-value=2.3e-22 Score=228.24 Aligned_cols=193 Identities=12% Similarity=0.130 Sum_probs=130.4
Q ss_pred cEEEEEEEeeceEEec----CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhh
Q psy14062 74 RLIITKIVAFNFKSYA----GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSN 149 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~----~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKST 149 (388)
.+.+++|+ ++|+ ++.+ |+|||+++.+ |++++|+|||||||||
T Consensus 759 ~l~~~nl~----~~~~~~~~~~~i--------L~~vs~~i~~----------------------Ge~~aI~G~sGaGKST 804 (1394)
T TIGR00956 759 IFHWRNLT----YEVKIKKEKRVI--------LNNVDGWVKP----------------------GTLTALMGASGAGKTT 804 (1394)
T ss_pred eEEEEeeE----EEecCCCCCcEe--------eeCCEEEEEC----------------------CEEEEEECCCCCCHHH
Confidence 35566666 5564 2345 4599999999 9999999999999999
Q ss_pred HHhhhhhcccEEEcC--CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccC-C--CCcc
Q psy14062 150 VIDSMLFRFNAIIGP--NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIID-K--PNEE 224 (388)
Q Consensus 150 Ll~~i~~~~ngIiGp--ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~-~--~~~~ 224 (388)
||++|+ |++-+ +.+|++.++|..+. ...| +.+++++|+...++..++.+...+...+.. . ....
T Consensus 805 LL~~La----g~~~~g~~~~G~I~i~G~~~~------~~~~-~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~ 873 (1394)
T TIGR00956 805 LLNVLA----ERVTTGVITGGDRLVNGRPLD------SSFQ-RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSE 873 (1394)
T ss_pred HHHHHh----CCCCCCCcceeEEEECCEECC------hhhh-cceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHH
Confidence 999999 87721 56799877765431 1233 469999998777777776654332111111 0 1000
Q ss_pred -ccccCCceEEEEEEeeeCCCCee----eeCCccccHHHHHHHHHHcCCCCCCCc-eEEeccchhhH-----HHHHhhhH
Q psy14062 225 -YEIIPGTDLEIARTAFYDNSSYY----TLNGKKVHFKEVAKVLRDHGVDLLNNR-FLILQEPIAKM-----EVLYGKYD 293 (388)
Q Consensus 225 -~~~~~~~~l~~~r~~~~~~~~~~----~LSgGq~qr~~Ia~aL~~~Gi~~~~p~-~LLlDEP~s~L-----e~i~~~l~ 293 (388)
...+. ..+...++....+..+. .|||||+||+.||++|+. +|+ +|+|||||++| ..+...++
T Consensus 874 ~~~~v~-~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~------~P~~iLlLDEPTsgLD~~~~~~i~~~L~ 946 (1394)
T TIGR00956 874 KMEYVE-EVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVA------KPKLLLFLDEPTSGLDSQTAWSICKLMR 946 (1394)
T ss_pred HHHHHH-HHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHc------CCCeEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 01111 11222222222333333 799999999999999999 996 99999999999 77788888
Q ss_pred HHHHHhhhHHHHHHHhHHHH-HHHHHH
Q psy14062 294 EERTEKLTRVQLVETDLKAL-EPELRK 319 (388)
Q Consensus 294 el~~e~~~~ii~vtH~l~~l-~~~~d~ 319 (388)
++++++. +|++++|++... .+.+|+
T Consensus 947 ~la~~g~-tvI~t~H~~~~~~~~~~D~ 972 (1394)
T TIGR00956 947 KLADHGQ-AILCTIHQPSAILFEEFDR 972 (1394)
T ss_pred HHHHcCC-EEEEEecCCCHHHHHhcCE
Confidence 8876655 599999998753 344554
No 355
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.82 E-value=2.3e-22 Score=212.58 Aligned_cols=178 Identities=14% Similarity=0.123 Sum_probs=124.3
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCC---CCcceeehhhhh
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNG---SGKSNVIDSMLF 178 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpng---SGKs~i~da~i~ 178 (388)
|+|||+++.+ |++++|+|||||||||||++|+ |.. +++ +|++.++|..+.
T Consensus 41 L~~vs~~i~~----------------------Ge~~aI~G~sGsGKSTLL~~L~----g~~-~~~~~~~G~i~~~g~~~~ 93 (617)
T TIGR00955 41 LKNVSGVAKP----------------------GELLAVMGSSGAGKTTLMNALA----FRS-PKGVKGSGSVLLNGMPID 93 (617)
T ss_pred ccCCEEEEeC----------------------CeEEEEECCCCCCHHHHHHHHh----CCC-CCCCcceeEEEECCEECC
Confidence 5599999999 9999999999999999999999 876 443 788777765431
Q ss_pred hcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCC---CCccc-cccCCceEEEEEEeeeCCCCe------ee
Q psy14062 179 VFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK---PNEEY-EIIPGTDLEIARTAFYDNSSY------YT 248 (388)
Q Consensus 179 vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~---~~~~~-~~~~~~~l~~~r~~~~~~~~~------~~ 248 (388)
.... .+.++|++|++..++.+++.++..+...+... ..... ..+. ..+...++....+..+ ..
T Consensus 94 -----~~~~-~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~-~~l~~lgL~~~~~t~vg~~~~~~~ 166 (617)
T TIGR00955 94 -----AKEM-RAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVD-EVLQALGLRKCANTRIGVPGRVKG 166 (617)
T ss_pred -----HHHH-hhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHH-HHHHHcCchhcCcCccCCCCCCCC
Confidence 1122 34699999998888887876654321111100 00000 0111 1122222222223322 36
Q ss_pred eCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHH-HHHHHHHHH
Q psy14062 249 LNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLK-ALEPELRKA 320 (388)
Q Consensus 249 LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~-~l~~~~d~~ 320 (388)
|||||+||+.||++|.. +|+++++|||+++| ..+.+.++++.+.+. ++++++|+.. .+.+.+|++
T Consensus 167 LSgGqrkRvsia~aL~~------~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~-tvi~~~hq~~~~i~~~~D~i 237 (617)
T TIGR00955 167 LSGGERKRLAFASELLT------DPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGK-TIICTIHQPSSELFELFDKI 237 (617)
T ss_pred cCcchhhHHHHHHHHHc------CCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCC-EEEEEeCCCCHHHHHHhceE
Confidence 99999999999999999 99999999999999 777778888776554 5999999984 677777765
No 356
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=6.7e-22 Score=179.01 Aligned_cols=193 Identities=16% Similarity=0.178 Sum_probs=130.0
Q ss_pred cEEEEEEEeeceEEecCc-eeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSYAGY-VTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~-~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+|.|++|. .+-.++ .+|. +|||+|.+ |++.+|+||||||||||..
T Consensus 3 ~L~I~dLh----v~v~~~keILk--------gvnL~v~~----------------------GEvhaiMGPNGsGKSTLa~ 48 (251)
T COG0396 3 MLEIKDLH----VEVEGKKEILK--------GVNLTVKE----------------------GEVHAIMGPNGSGKSTLAY 48 (251)
T ss_pred eeEEeeeE----EEecCchhhhc--------CcceeEcC----------------------CcEEEEECCCCCCHHHHHH
Confidence 56677777 667774 7755 99999999 9999999999999999999
Q ss_pred hhhhcccEEEc-CCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCc---c-ccc
Q psy14062 153 SMLFRFNAIIG-PNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNE---E-YEI 227 (388)
Q Consensus 153 ~i~~~~ngIiG-pngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~---~-~~~ 227 (388)
+|+ |--+ ...+|.+.+.|.++..+.. ....+..+..-||.|.-+|+.+..++.....+....... . ...
T Consensus 49 ~i~----G~p~Y~Vt~G~I~~~GedI~~l~~--~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~ 122 (251)
T COG0396 49 TIM----GHPKYEVTEGEILFDGEDILELSP--DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKE 122 (251)
T ss_pred HHh----CCCCceEecceEEECCcccccCCH--hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHH
Confidence 998 5432 2358999999988765432 222234688889999888876654322111110000000 0 000
Q ss_pred cCCceEEEEEEe-eeCCCCe-eeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhh
Q psy14062 228 IPGTDLEIARTA-FYDNSSY-YTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKL 300 (388)
Q Consensus 228 ~~~~~l~~~r~~-~~~~~~~-~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~ 300 (388)
.. .......+. ...+++. -.+|||+++|.+|.+++.. +|++.|||||=|+| +.+...++.++.++.
T Consensus 123 ~~-e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~l------ePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~ 195 (251)
T COG0396 123 LK-EKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLL------EPKLAILDEPDSGLDIDALKIVAEGINALREEGR 195 (251)
T ss_pred HH-HHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhc------CCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCC
Confidence 00 001111111 1122222 3579999999999999999 99999999999988 777788888888876
Q ss_pred hHHHHHHHhHHHHH
Q psy14062 301 TRVQLVETDLKALE 314 (388)
Q Consensus 301 ~~ii~vtH~l~~l~ 314 (388)
. ++++||.-..+.
T Consensus 196 ~-~liITHy~rll~ 208 (251)
T COG0396 196 G-VLIITHYQRLLD 208 (251)
T ss_pred e-EEEEecHHHHHh
Confidence 5 999999754444
No 357
>KOG0018|consensus
Probab=99.82 E-value=3.4e-19 Score=187.53 Aligned_cols=233 Identities=25% Similarity=0.424 Sum_probs=170.1
Q ss_pred EEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 76 IITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 76 ~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.+..|.+.|||||.|+++++|| ..||+||||||||||.|+.+|+
T Consensus 3 ~L~~lEieNFKSYkGh~~iGPF------------------------------------~~FTaIIGPNGSGKSNlMDAIS 46 (1141)
T KOG0018|consen 3 RLLTLEIENFKSYKGHQVIGPF------------------------------------DRFTAIIGPNGSGKSNLMDAIS 46 (1141)
T ss_pred ceeeeehhccccccCceeecCc------------------------------------hhceeeeCCCCCchHHHHHHHH
Confidence 4667899999999999999999 5899777777777666665555
Q ss_pred hcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEE
Q psy14062 156 FRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEI 235 (388)
Q Consensus 156 ~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~ 235 (388)
||+|..++.+|......+|++..... .|.+.|.. ++ +....+
T Consensus 47 ----------------------FVLGekss~LR~~~lkdLIyg~~i~~-----~v~l~Y~~--~d---------g~~~~F 88 (1141)
T KOG0018|consen 47 ----------------------FVLGEKSSHLRVSHLKDLIYGKPIRK-----PVTLKYEE--GD---------GETRRF 88 (1141)
T ss_pred ----------------------HHhcCCCcccccchHHHHhcCCccCC-----chhheeec--CC---------chhhhh
Confidence 66677777788777888888543322 23333321 11 123445
Q ss_pred EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH------------HHHHh------hhHHHHH
Q psy14062 236 ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM------------EVLYG------KYDEERT 297 (388)
Q Consensus 236 ~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L------------e~i~~------~l~el~~ 297 (388)
.|.+. .+.+.|.+.+.-+++.++..-|...||-+...+|||+|.-+..+ ++|.+ .+.+++.
T Consensus 89 ~R~I~-~G~seY~IDne~VT~eeY~~eLekinIlVkARNFLVFQGdVE~IA~k~PkElt~LFEEISgSiElK~EYeelK~ 167 (1141)
T KOG0018|consen 89 TRAIN-GGTSEYMIDNEIVTREEYLEELEKINILVKARNFLVFQGDVEKIAGKNPKELTALFEEISGSIELKPEYEELKY 167 (1141)
T ss_pred hhhhc-CCceeEEEcceeccHHHHHHHHhhcceeeeeeeEEEecChHHHHhccCHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 56555 78999999999999999999999999999999999999444322 66666 2222222
Q ss_pred HhhhHHHH----------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14062 298 EKLTRVQL----------VETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANL 367 (388)
Q Consensus 298 e~~~~ii~----------vtH~l~~l~~~~d~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~el~~~~ 367 (388)
+.....-. |..++..++...+.+.+|+.+.++..+++...+.|++++.++.+++...++..+.+++..+.
T Consensus 168 E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~ 247 (1141)
T KOG0018|consen 168 EMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLK 247 (1141)
T ss_pred HHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHH
Confidence 21111222 33345556667788999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14062 368 ESIKKCTDEMESAKTE 383 (388)
Q Consensus 368 ~~~~~~~~~~~~~~~~ 383 (388)
...+....++...+++
T Consensus 248 ~~~d~~e~ei~~~k~e 263 (1141)
T KOG0018|consen 248 ERMDKKEREIRVRKKE 263 (1141)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 8777777766666543
No 358
>PLN03130 ABC transporter C family member; Provisional
Probab=99.82 E-value=2.5e-21 Score=222.20 Aligned_cols=192 Identities=14% Similarity=0.193 Sum_probs=130.3
Q ss_pred cEEEEEEEeeceEEecCc--eeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKIVAFNFKSYAGY--VTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~--~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
.+.+++++ .+|.+. .+ |+||||+|++ |+.+|||||||||||||+
T Consensus 1237 ~I~f~nVs----f~Y~~~~~~V--------L~~is~~I~~----------------------GekVaIVGrSGSGKSTLl 1282 (1622)
T PLN03130 1237 SIKFEDVV----LRYRPELPPV--------LHGLSFEISP----------------------SEKVGIVGRTGAGKSSML 1282 (1622)
T ss_pred cEEEEEEE----EEeCCCCCce--------ecceeEEEcC----------------------CCEEEEECCCCCCHHHHH
Confidence 45666665 568642 34 5599999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCC
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPG 230 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~ 230 (388)
++|. +++ ++.+|++.|+|.++.-. ....+| +++++|+|++.+|.+ +..++...+.. ..+++ .+....
T Consensus 1283 ~lL~----rl~-~p~~G~I~IDG~dI~~i--~l~~LR-~~IsiVpQdp~LF~G-TIreNLd~~~~---~tdeei~~Al~~ 1350 (1622)
T PLN03130 1283 NALF----RIV-ELERGRILIDGCDISKF--GLMDLR-KVLGIIPQAPVLFSG-TVRFNLDPFNE---HNDADLWESLER 1350 (1622)
T ss_pred HHHh----CcC-CCCCceEEECCEecccC--CHHHHH-hccEEECCCCccccc-cHHHHhCcCCC---CCHHHHHHHHHH
Confidence 9999 888 77899999988766432 234456 469999999998876 44433332211 11111 000000
Q ss_pred ----ceEE-E-EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 231 ----TDLE-I-ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 231 ----~~l~-~-~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
..+. + .+....-+.....|||||+||++|||||.. +|++|||||||++| ..|...+++..+ +
T Consensus 1351 a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr------~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~-~ 1423 (1622)
T PLN03130 1351 AHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR------RSKILVLDEATAAVDVRTDALIQKTIREEFK-S 1423 (1622)
T ss_pred cCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc------CCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-C
Confidence 0000 0 011111234556899999999999999999 99999999999999 334444544432 2
Q ss_pred hhHHHHHHHhHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~ 320 (388)
.|+++|+|+++.+.. +|++
T Consensus 1424 -~TvI~IAHRL~tI~~-~DrI 1442 (1622)
T PLN03130 1424 -CTMLIIAHRLNTIID-CDRI 1442 (1622)
T ss_pred -CEEEEEeCChHHHHh-CCEE
Confidence 369999999988875 5544
No 359
>KOG0055|consensus
Probab=99.82 E-value=5.9e-21 Score=206.69 Aligned_cols=186 Identities=16% Similarity=0.204 Sum_probs=126.5
Q ss_pred EEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC
Q psy14062 86 KSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN 165 (388)
Q Consensus 86 ksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn 165 (388)
.+|..++-. .+++|+||+|+. |+.+||||||||||||.+.+|- -.+ .+
T Consensus 995 F~YPsRP~~-----~Il~~l~l~i~~----------------------GqTvALVG~SGsGKSTvI~LLe----RfY-dp 1042 (1228)
T KOG0055|consen 995 FAYPTRPDV-----PVLNNLSLSIRA----------------------GQTVALVGPSGSGKSTVISLLE----RFY-DP 1042 (1228)
T ss_pred eeCCCCCCc-----hhhcCCcEEecC----------------------CCEEEEECCCCCCHHHHHHHHH----Hhc-CC
Confidence 468765532 245699999999 9999999999999999999999 445 45
Q ss_pred CCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccc--cC--CceEEEE--EEe
Q psy14062 166 GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEI--IP--GTDLEIA--RTA 239 (388)
Q Consensus 166 gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~--~~--~~~l~~~--r~~ 239 (388)
.+|++.|+|.++. ..+...+|. +++.|-|+|.+|......++.+.... .. ..+..+. .. ..-+.-. +..
T Consensus 1043 ~~G~V~IDg~dik--~lnl~~LR~-~i~lVsQEP~LF~~TIrENI~YG~~~-vs-~~eIi~Aak~ANaH~FI~sLP~GyD 1117 (1228)
T KOG0055|consen 1043 DAGKVKIDGVDIK--DLNLKWLRK-QIGLVSQEPVLFNGTIRENIAYGSEE-VS-EEEIIEAAKLANAHNFISSLPQGYD 1117 (1228)
T ss_pred CCCeEEECCcccc--cCCHHHHHH-hcceeccCchhhcccHHHHHhccCCC-CC-HHHHHHHHHHhhhHHHHhcCcCccc
Confidence 6999999988765 334556774 59999999999865544444443111 00 0000000 00 0000000 111
Q ss_pred eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHH
Q psy14062 240 FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM----EVLYGKYDEERTEKLTRVQLVETDLKALEP 315 (388)
Q Consensus 240 ~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~ 315 (388)
..-+....+|||||+||.+||||+.. +|++|||||.||+| |.+...--+...++. |.++|.|.+..+..
T Consensus 1118 T~vGerG~QLSGGQKQRIAIARAilR------nPkILLLDEATSALDseSErvVQeALd~a~~gR-T~IvIAHRLSTIqn 1190 (1228)
T KOG0055|consen 1118 TRVGERGVQLSGGQKQRIAIARAILR------NPKILLLDEATSALDSESERVVQEALDRAMEGR-TTIVIAHRLSTIQN 1190 (1228)
T ss_pred CccCcccCcCCchHHHHHHHHHHHHc------CCCeeeeeccchhhhhhhHHHHHHHHHHhhcCC-cEEEEecchhhhhc
Confidence 12356678999999999999999999 99999999999999 555553333334455 47888898876653
No 360
>KOG0056|consensus
Probab=99.81 E-value=6.1e-21 Score=187.79 Aligned_cols=186 Identities=16% Similarity=0.240 Sum_probs=121.6
Q ss_pred cEEEEEEEeeceEEec-CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSYA-GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~-~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
++...+++ .+|. ++.+|. ||||++.+ |+.+|+|||||+||||++|
T Consensus 537 ~i~fsnvt----F~Y~p~k~vl~--------disF~v~p----------------------GktvAlVG~SGaGKSTimR 582 (790)
T KOG0056|consen 537 KIEFSNVT----FAYDPGKPVLS--------DISFTVQP----------------------GKTVALVGPSGAGKSTIMR 582 (790)
T ss_pred eEEEEEeE----EecCCCCceee--------cceEEecC----------------------CcEEEEECCCCCchhHHHH
Confidence 55555555 4686 455654 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCc-cccccCC-
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNE-EYEIIPG- 230 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~-~~~~~~~- 230 (388)
++.+-++ -.||.+.++|.++.. .....+|. .||+|||+..+|.+....++.+. +. +.+++ .++....
T Consensus 583 lLfRffd-----v~sGsI~iDgqdIrn--vt~~SLRs-~IGVVPQDtvLFNdTI~yNIrya--k~-~AsneevyaAAkAA 651 (790)
T KOG0056|consen 583 LLFRFFD-----VNSGSITIDGQDIRN--VTQSSLRS-SIGVVPQDTVLFNDTILYNIRYA--KP-SASNEEVYAAAKAA 651 (790)
T ss_pred HHHHHhh-----ccCceEEEcCchHHH--HHHHHHHH-hcCcccCcceeecceeeeheeec--CC-CCChHHHHHHHHHh
Confidence 9995554 248999999988752 23344664 59999999888765433333221 11 11111 1111000
Q ss_pred ----ceEEEE-EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH----HH-HHhhhHHHHHHhh
Q psy14062 231 ----TDLEIA-RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM----EV-LYGKYDEERTEKL 300 (388)
Q Consensus 231 ----~~l~~~-r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L----e~-i~~~l~el~~e~~ 300 (388)
..+.+- +-...-+.....||||++||++|||++.. .|.+++|||.||+| |. |-..+.++....
T Consensus 652 ~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK------~P~iIlLDEATSALDT~tER~IQaaL~rlca~R- 724 (790)
T KOG0056|consen 652 QIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILK------APSIILLDEATSALDTNTERAIQAALARLCANR- 724 (790)
T ss_pred hHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhc------CCcEEEEcchhhhcCCccHHHHHHHHHHHhcCC-
Confidence 001000 00112256678899999999999999999 99999999999999 44 444555555432
Q ss_pred hHHHHHHHhHHH
Q psy14062 301 TRVQLVETDLKA 312 (388)
Q Consensus 301 ~~ii~vtH~l~~ 312 (388)
|-++|.|.+..
T Consensus 725 -TtIVvAHRLST 735 (790)
T KOG0056|consen 725 -TTIVVAHRLST 735 (790)
T ss_pred -ceEEEeeeehh
Confidence 24455555443
No 361
>PTZ00243 ABC transporter; Provisional
Probab=99.81 E-value=7.1e-21 Score=218.00 Aligned_cols=192 Identities=13% Similarity=0.168 Sum_probs=129.1
Q ss_pred cEEEEEEEeeceEEecCc--eeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKIVAFNFKSYAGY--VTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~--~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
.+.+++++ .+|.+. .+ |+||||+|++ |+.+||||++|||||||+
T Consensus 1308 ~I~f~nVs----f~Y~~~~~~v--------L~~vsf~I~~----------------------GekVaIVGrTGSGKSTLl 1353 (1560)
T PTZ00243 1308 SLVFEGVQ----MRYREGLPLV--------LRGVSFRIAP----------------------REKVGIVGRTGSGKSTLL 1353 (1560)
T ss_pred eEEEEEEE----EEeCCCCCce--------eecceEEECC----------------------CCEEEEECCCCCCHHHHH
Confidence 46666665 568642 24 5599999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cccCC
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EIIPG 230 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~~ 230 (388)
++|. +++ ++.+|.+.|+|.++.-. ....+| +.+++|+|++.+|.+ +..++...+.. ..+++. .....
T Consensus 1354 ~lLl----rl~-~p~~G~I~IDG~di~~i--~l~~LR-~~I~iVpQdp~LF~g-TIreNIdp~~~---~sdeeI~~Al~~ 1421 (1560)
T PTZ00243 1354 LTFM----RMV-EVCGGEIRVNGREIGAY--GLRELR-RQFSMIPQDPVLFDG-TVRQNVDPFLE---ASSAEVWAALEL 1421 (1560)
T ss_pred HHHh----CCC-CCCCcEEEECCEEcccC--CHHHHH-hcceEECCCCccccc-cHHHHhCcccC---CCHHHHHHHHHH
Confidence 9999 888 67799999988776533 234456 469999999999876 44333322211 011100 00000
Q ss_pred ----ceEEE--EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCC-CceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 231 ----TDLEI--ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLN-NRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 231 ----~~l~~--~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~-p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
..+.- .+....-+.....|||||+||++|||||.. + |++||||||||+| ..|...+.+..+
T Consensus 1422 a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~------~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~- 1494 (1560)
T PTZ00243 1422 VGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK------KGSGFILMDEATANIDPALDRQIQATVMSAFS- 1494 (1560)
T ss_pred CCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc------CCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC-
Confidence 00000 011111234456799999999999999998 7 7999999999999 334444444322
Q ss_pred hhhHHHHHHHhHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
+ .|+++|+|+++.+.. +|++
T Consensus 1495 ~-~TvI~IAHRl~ti~~-~DrI 1514 (1560)
T PTZ00243 1495 A-YTVITIAHRLHTVAQ-YDKI 1514 (1560)
T ss_pred C-CEEEEEeccHHHHHh-CCEE
Confidence 2 369999999987764 5654
No 362
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.81 E-value=5.2e-21 Score=219.30 Aligned_cols=194 Identities=15% Similarity=0.171 Sum_probs=130.4
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+++++ .+|.... ..+|+||||+|++ |+.+||+||||||||||+++
T Consensus 1284 ~I~f~nVs----f~Y~~~~------~~vL~~is~~I~~----------------------GekiaIVGrTGsGKSTL~~l 1331 (1522)
T TIGR00957 1284 RVEFRNYC----LRYREDL------DLVLRHINVTIHG----------------------GEKVGIVGRTGAGKSSLTLG 1331 (1522)
T ss_pred cEEEEEEE----EEeCCCC------cccccceeEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 46666666 5686431 0135699999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cccC--C
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EIIP--G 230 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~--~ 230 (388)
|. +++ ++.+|++.|+|.++.-.+ ...+| +++++|+|+|.+|++ +..++.-.+.. ..+++. .... .
T Consensus 1332 L~----rl~-~~~~G~I~IdG~dI~~i~--~~~LR-~~i~iVpQdp~LF~g-TIr~NLdp~~~---~sdeei~~al~~a~ 1399 (1522)
T TIGR00957 1332 LF----RIN-ESAEGEIIIDGLNIAKIG--LHDLR-FKITIIPQDPVLFSG-SLRMNLDPFSQ---YSDEEVWWALELAH 1399 (1522)
T ss_pred Hh----cCc-cCCCCeEEECCEEccccC--HHHHH-hcCeEECCCCcccCc-cHHHHcCcccC---CCHHHHHHHHHHcC
Confidence 99 888 677999999987765332 23455 459999999999876 44443322211 111110 0000 0
Q ss_pred --ceEE-E-EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhh
Q psy14062 231 --TDLE-I-ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLT 301 (388)
Q Consensus 231 --~~l~-~-~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~ 301 (388)
..+. + .+....-+.....|||||+||++|||||.. +|++|||||||++| ..|.+.+++..+ + .
T Consensus 1400 l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr------~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~-~-~ 1471 (1522)
T TIGR00957 1400 LKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR------KTKILVLDEATAAVDLETDNLIQSTIRTQFE-D-C 1471 (1522)
T ss_pred cHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc------CCCEEEEECCcccCCHHHHHHHHHHHHHHcC-C-C
Confidence 0000 0 011111234456799999999999999999 99999999999999 333444444322 2 3
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q psy14062 302 RVQLVETDLKALEPELRKA 320 (388)
Q Consensus 302 ~ii~vtH~l~~l~~~~d~~ 320 (388)
|+++|+|+++.+.. +|++
T Consensus 1472 TvI~IAHRl~ti~~-~DrI 1489 (1522)
T TIGR00957 1472 TVLTIAHRLNTIMD-YTRV 1489 (1522)
T ss_pred EEEEEecCHHHHHh-CCEE
Confidence 69999999988775 4554
No 363
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.81 E-value=1.2e-20 Score=172.87 Aligned_cols=159 Identities=14% Similarity=0.210 Sum_probs=97.7
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIH 213 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~ 213 (388)
..+++|+|||||||||||++|++.+.|.. ++++|.+..+...+. .+ .....++++|+.+. ..........-.
T Consensus 22 ~g~~~i~G~NGsGKTTLl~ai~~~l~G~~-~~~~~~~~~~~~~i~-~~-----~~~~~v~~~f~~~~-~~~~~v~r~~~~ 93 (204)
T cd03240 22 SPLTLIVGQNGAGKTTIIEALKYALTGEL-PPNSKGGAHDPKLIR-EG-----EVRAQVKLAFENAN-GKKYTITRSLAI 93 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcCCC-CcccccccchHHHHh-CC-----CCcEEEEEEEEeCC-CCEEEEEEEhhH
Confidence 34999999999999999999976555665 555565431111111 11 12245888888753 111111110000
Q ss_pred eccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccH------HHHHHHHHHcCCCCCCCceEEeccchhhH--
Q psy14062 214 FAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHF------KEVAKVLRDHGVDLLNNRFLILQEPIAKM-- 285 (388)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr------~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-- 285 (388)
+.++.... ... .....+..+..||+||+|+ +++++++.. +|+++|+|||+++|
T Consensus 94 ~~~~~~~~--------~~~-----~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~------~p~illlDEP~~~LD~ 154 (204)
T cd03240 94 LENVIFCH--------QGE-----SNWPLLDMRGRCSGGEKVLASLIIRLALAETFGS------NCGILALDEPTTNLDE 154 (204)
T ss_pred hhceeeec--------hHH-----HHHHHhcCccccCccHHHHHHHHHHHHHHHHhcc------CCCEEEEcCCccccCH
Confidence 11100000 000 0011256788999999996 677888877 99999999999999
Q ss_pred ---H-HHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 286 ---E-VLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 286 ---e-~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
+ .+.+.+.+++++...+++++||+++.+. .+|++
T Consensus 155 ~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~-~~d~i 192 (204)
T cd03240 155 ENIEESLAEIIEERKSQKNFQLIVITHDEELVD-AADHI 192 (204)
T ss_pred HHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh-hCCEE
Confidence 4 6777887776652335999999987654 46644
No 364
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.80 E-value=7.1e-21 Score=217.67 Aligned_cols=191 Identities=16% Similarity=0.260 Sum_probs=128.5
Q ss_pred cEEEEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
.+.+++++ .+|.. ..+ |+||||+|++ |+.+||+|+||||||||+
T Consensus 1217 ~I~f~nVs----~~Y~~~~~~v--------L~~is~~I~~----------------------GekvaIvGrSGsGKSTLl 1262 (1490)
T TIGR01271 1217 QMDVQGLT----AKYTEAGRAV--------LQDLSFSVEG----------------------GQRVGLLGRTGSGKSTLL 1262 (1490)
T ss_pred eEEEEEEE----EEeCCCCcce--------eeccEEEEcC----------------------CCEEEEECCCCCCHHHHH
Confidence 45666666 56864 344 5599999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCC
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPG 230 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~ 230 (388)
++|. +++ + .+|++.|+|.++.-.+ ...+| +++++++|+|.+|++ +..++.-.+.. ..+.+ ......
T Consensus 1263 ~lL~----rl~-~-~~G~I~IdG~di~~i~--~~~lR-~~is~IpQdp~LF~G-TIR~NLdp~~~---~tdeei~~aL~~ 1329 (1490)
T TIGR01271 1263 SALL----RLL-S-TEGEIQIDGVSWNSVT--LQTWR-KAFGVIPQKVFIFSG-TFRKNLDPYEQ---WSDEEIWKVAEE 1329 (1490)
T ss_pred HHHh----hhc-C-CCcEEEECCEEcccCC--HHHHH-hceEEEeCCCccCcc-CHHHHhCcccC---CCHHHHHHHHHH
Confidence 9999 887 6 5899988887654222 23355 469999999999876 33333322210 01110 000000
Q ss_pred c----eE-EE-EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 231 T----DL-EI-ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 231 ~----~l-~~-~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
. .+ .+ .++...-+.....|||||+||++|||+|.. +|++|||||||++| ..|...|++..+ +
T Consensus 1330 ~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr------~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~-~ 1402 (1490)
T TIGR01271 1330 VGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS------KAKILLLDEPSAHLDPVTLQIIRKTLKQSFS-N 1402 (1490)
T ss_pred CCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC------CCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-C
Confidence 0 00 00 011111233455799999999999999999 99999999999999 344445544332 2
Q ss_pred hhHHHHHHHhHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~ 320 (388)
.|+++|+|+++.+.. +|++
T Consensus 1403 -~TvI~IaHRl~ti~~-~DrI 1421 (1490)
T TIGR01271 1403 -CTVILSEHRVEALLE-CQQF 1421 (1490)
T ss_pred -CEEEEEecCHHHHHh-CCEE
Confidence 369999999988775 6653
No 365
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.79 E-value=2.1e-21 Score=220.45 Aligned_cols=183 Identities=9% Similarity=0.000 Sum_probs=125.7
Q ss_pred ccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEE---cCCCCCcceeehhhh
Q psy14062 101 EVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAII---GPNGSGKSNVIDSML 177 (388)
Q Consensus 101 ~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIi---GpngSGKs~i~da~i 177 (388)
+|+|||+.+.+ |++++|+|||||||||||++|+ |.. .++.+|++.++|..+
T Consensus 76 iL~~vs~~i~~----------------------Ge~~aIlG~nGsGKSTLLk~La----G~~~~~~~~~~G~I~~~G~~~ 129 (1394)
T TIGR00956 76 ILKPMDGLIKP----------------------GELTVVLGRPGSGCSTLLKTIA----SNTDGFHIGVEGVITYDGITP 129 (1394)
T ss_pred eeeCCEEEEEC----------------------CEEEEEECCCCCCHHHHHHHHh----CCCCCCCCCceeEEEECCEeh
Confidence 45699999999 9999999999999999999999 764 145689988877543
Q ss_pred hhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccC-------CCCccc-cccCCceEEEEEEeee-----CCC
Q psy14062 178 FVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIID-------KPNEEY-EIIPGTDLEIARTAFY-----DNS 244 (388)
Q Consensus 178 ~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~-------~~~~~~-~~~~~~~l~~~r~~~~-----~~~ 244 (388)
.-. ....++.+++++|+...++.+++.+...+...+.. ...... +......+...++... .+.
T Consensus 130 ~~~----~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 205 (1394)
T TIGR00956 130 EEI----KKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGND 205 (1394)
T ss_pred HHH----HhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCC
Confidence 211 11123459999999888888887664322111110 000010 0000111222222221 233
Q ss_pred CeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhH-HHHHHHHH
Q psy14062 245 SYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDL-KALEPELR 318 (388)
Q Consensus 245 ~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l-~~l~~~~d 318 (388)
....|||||+||+.||++|.. +|+++++||||++| .++...++++.++...++++++|+. ..+.+.+|
T Consensus 206 ~~~~LSGGerkRvsIA~aL~~------~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D 279 (1394)
T TIGR00956 206 FVRGVSGGERKRVSIAEASLG------GAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFD 279 (1394)
T ss_pred cCCCCCcccchHHHHHHHHHh------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhc
Confidence 467899999999999999999 99999999999999 7788888888765334589999995 67777665
Q ss_pred H
Q psy14062 319 K 319 (388)
Q Consensus 319 ~ 319 (388)
+
T Consensus 280 ~ 280 (1394)
T TIGR00956 280 K 280 (1394)
T ss_pred e
Confidence 4
No 366
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.79 E-value=7.4e-21 Score=195.50 Aligned_cols=187 Identities=22% Similarity=0.216 Sum_probs=125.2
Q ss_pred CcEEEEEEEeeceEEecC-ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 73 PRLIITKIVAFNFKSYAG-YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~-~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
+.+.+.++. ++|++ +.++. ++||.|.. |+.+||||||||||||||
T Consensus 320 ~vl~~~~~~----~~y~~~~~l~~--------~~s~~i~~----------------------g~riaiiG~NG~GKSTLl 365 (530)
T COG0488 320 LVLEFENVS----KGYDGGRLLLK--------DLSFRIDR----------------------GDRIAIVGPNGAGKSTLL 365 (530)
T ss_pred eeEEEeccc----cccCCCceeec--------CceEEecC----------------------CCEEEEECCCCCCHHHHH
Confidence 345666666 78966 45554 99999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCC-CCCcceEEEEEEeccccCCCCccccccCC
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQ-VGGVSRCSVAIHFAQIIDKPNEEYEIIPG 230 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~-~~~~~~~eV~~~~~~~~~~~~~~~~~~~~ 230 (388)
++|. |.++|. +|++.+ |.. -+++|+.|+... .+..+..+ .+........+....
T Consensus 366 k~l~----g~~~~~-~G~v~~--------g~~------v~igyf~Q~~~~l~~~~t~~d------~l~~~~~~~~e~~~r 420 (530)
T COG0488 366 KLLA----GELGPL-SGTVKV--------GET------VKIGYFDQHRDELDPDKTVLE------ELSEGFPDGDEQEVR 420 (530)
T ss_pred HHHh----hhcccC-CceEEe--------CCc------eEEEEEEehhhhcCccCcHHH------HHHhhCccccHHHHH
Confidence 9999 888665 888533 221 248898887532 22111111 000000000000000
Q ss_pred ceEE-EEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-HHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 231 TDLE-IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-EVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 231 ~~l~-~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-e~i~~~l~el~~e~~~~ii~vtH 308 (388)
..+. +........+++..|||||+.|+.+|+++.. .|++|||||||+.| -+-.+.+.+.-.+...+|++|||
T Consensus 421 ~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~------~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSH 494 (530)
T COG0488 421 AYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQ------PPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSH 494 (530)
T ss_pred HHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhcc------CCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeC
Confidence 0000 1011122357888999999999999999999 99999999999999 44444444444444446999999
Q ss_pred hHHHHHHHHHHHHHHH
Q psy14062 309 DLKALEPELRKAVNFL 324 (388)
Q Consensus 309 ~l~~l~~~~d~~~~y~ 324 (388)
|...+.+.++++..+.
T Consensus 495 Dr~Fl~~va~~i~~~~ 510 (530)
T COG0488 495 DRYFLDRVATRIWLVE 510 (530)
T ss_pred CHHHHHhhcceEEEEc
Confidence 9999999998876554
No 367
>PLN03140 ABC transporter G family member; Provisional
Probab=99.79 E-value=1.7e-21 Score=221.01 Aligned_cols=178 Identities=12% Similarity=0.087 Sum_probs=121.1
Q ss_pred ccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC--CCCcceeehhhhh
Q psy14062 101 EVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN--GSGKSNVIDSMLF 178 (388)
Q Consensus 101 ~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn--gSGKs~i~da~i~ 178 (388)
+|+|||+.+.+ |++++|+|||||||||||++|+ |.. ++ .+|++.++|....
T Consensus 895 iL~~vs~~i~~----------------------Gel~aL~G~sGaGKTTLL~~La----G~~-~~g~~~G~I~inG~~~~ 947 (1470)
T PLN03140 895 LLREVTGAFRP----------------------GVLTALMGVSGAGKTTLMDVLA----GRK-TGGYIEGDIRISGFPKK 947 (1470)
T ss_pred EeeCcEEEEEC----------------------CeEEEEECCCCCCHHHHHHHHc----CCC-CCCcccceEEECCccCC
Confidence 45699999999 9999999999999999999999 765 32 3688766553221
Q ss_pred hcCccchhhhhccceeEecccCCCCCcceEEEEEEecccc-CC--CCccc-cccCCceEEEEEEeeeCCCC-----eeee
Q psy14062 179 VFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQII-DK--PNEEY-EIIPGTDLEIARTAFYDNSS-----YYTL 249 (388)
Q Consensus 179 vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~-~~--~~~~~-~~~~~~~l~~~r~~~~~~~~-----~~~L 249 (388)
....++.++|++|+...++.+++.+...+...+. .. ..... ..+. ..+...++....+.. ...|
T Consensus 948 ------~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~-~vl~~lgL~~~~~~~vg~~~~~~L 1020 (1470)
T PLN03140 948 ------QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVD-EVMELVELDNLKDAIVGLPGVTGL 1020 (1470)
T ss_pred ------hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHH-HHHHHCCChhHhCCccCCCCCCCc
Confidence 1112345899999987777777765432211111 00 00000 0011 112222222222333 2579
Q ss_pred CCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHH-HHHHHHHH
Q psy14062 250 NGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLK-ALEPELRK 319 (388)
Q Consensus 250 SgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~-~l~~~~d~ 319 (388)
||||+||+.||++|+. +|++|+|||||++| ..+...++++.+++. +|++++|+.+ .+.+.+|+
T Consensus 1021 SgGerkRvsIa~aL~~------~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~-tVI~t~Hq~~~~i~~~~D~ 1089 (1470)
T PLN03140 1021 STEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR-TVVCTIHQPSIDIFEAFDE 1089 (1470)
T ss_pred CHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEeCCCCHHHHHhCCE
Confidence 9999999999999999 99999999999999 777888888877765 5999999987 35555443
No 368
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.78 E-value=6.7e-17 Score=181.99 Aligned_cols=236 Identities=26% Similarity=0.415 Sum_probs=143.5
Q ss_pred EEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 77 i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
|..|.+.||+||.+.+.| +|+ +++++|+|||||||||||.+|.|
T Consensus 2 i~~l~~~nf~s~~~~~~i-~f~-----------------------------------~~~~~i~G~NGsGKS~ll~ai~~ 45 (1179)
T TIGR02168 2 LKKLELAGFKSFADPTTI-NFD-----------------------------------KGITGIVGPNGCGKSNIVDAIRW 45 (1179)
T ss_pred eeEEEEeCccccCCCeeE-Eec-----------------------------------CCcEEEECCCCCChhHHHHHHHH
Confidence 678999999999887666 566 78999999999999999999984
Q ss_pred cccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccC-CCCCcceEEEEEEeccccCCCCccccccCCceEEE
Q psy14062 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD-QVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEI 235 (388)
Q Consensus 157 ~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~-~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~ 235 (388)
. +|.. +++ .+|...++.+++.+. ..+....+.|.+.|... +.....+....+.+
T Consensus 46 ~----lg~~-~~~----------------~~r~~~~~~~i~~g~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~i 100 (1179)
T TIGR02168 46 V----LGEQ-SAK----------------ALRGGKMEDVIFNGSETRKPLSLAEVELVFDNS----DGLLPGADYSEISI 100 (1179)
T ss_pred H----HcCC-chh----------------hhhhccchhhhcCCCcccCCCCeeEEEEEEecC----CCCCCCCCCCeEEE
Confidence 3 3321 111 123333443433322 12334556677776421 11000011235667
Q ss_pred EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH------------HHHHh--hhHHHHH---H
Q psy14062 236 ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM------------EVLYG--KYDEERT---E 298 (388)
Q Consensus 236 ~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L------------e~i~~--~l~el~~---e 298 (388)
.|.....+.+.|.++|....+.++..+|..+|++.+++ .+|.|+-+..+ +++.+ .+.+... +
T Consensus 101 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~-~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 179 (1179)
T TIGR02168 101 TRRLYRDGESEYFINGQPCRLKDIQDLFLDTGLGKRSY-SIIEQGKISEIIEAKPEERRAIFEEAAGISKYKERRKETER 179 (1179)
T ss_pred EEEEeeCCCceeeECCCcccHHHHHHHHhccCCCcccc-hheecccHHHHHcCCHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 77766666778899999999899999999999998665 57888665554 22222 1111111 1
Q ss_pred hhhH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14062 299 KLTR----VQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCT 374 (388)
Q Consensus 299 ~~~~----ii~vtH~l~~l~~~~d~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~ 374 (388)
...+ +..+...+..+++.+..+.+|..+..+++.++..+...++..+..++.++..+++.+..++..+..++..+.
T Consensus 180 nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (1179)
T TIGR02168 180 KLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELT 259 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 223445577788888899999888888888877765555554444444444444444444433333333333
No 369
>KOG0059|consensus
Probab=99.78 E-value=9.2e-21 Score=207.09 Aligned_cols=204 Identities=16% Similarity=0.179 Sum_probs=154.0
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
..+.+.++. |-|+.... |++++|+.|++ |++.+++|||||||||+++
T Consensus 563 ~~~~~~~L~----k~y~~~~~-------Av~~ls~~V~~----------------------gecfgLLG~NGAGKtT~f~ 609 (885)
T KOG0059|consen 563 SALVLNNLS----KVYGGKDG-------AVRGLSFAVPP----------------------GECFGLLGVNGAGKTTTFK 609 (885)
T ss_pred ceEEEccee----eeecchhh-------hhcceEEEecC----------------------CceEEEecCCCCCchhhHH
Confidence 355666777 87876651 45699999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCce
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~ 232 (388)
++. |.. ++.+|...+.|.++..... ...-.+.+||.||...+.+.+|..+....+.++.+....+........
T Consensus 610 mlt----G~~-~~t~G~a~i~g~~i~~~~~--~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~l 682 (885)
T KOG0059|consen 610 MLT----GET-KPTSGEALIKGHDITVSTD--FQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKL 682 (885)
T ss_pred HHh----CCc-cCCcceEEEecCccccccc--hhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHH
Confidence 999 999 8889997776655432111 111235699999998888888887766666655554322211111112
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+....+....+.+...+|||+++|+.+|-+|.. +|++++||||+++| ..++..+.+.++.+. .+++.|
T Consensus 683 l~~~~L~~~~~~~~~~ySgG~kRkLs~aialig------~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~-aiiLTS 755 (885)
T KOG0059|consen 683 LRLVGLGPYANKQVRTYSGGNKRRLSFAIALIG------DPSVILLDEPSTGLDPKARRHLWDIIARLRKNGK-AIILTS 755 (885)
T ss_pred HHHcCChhhhccchhhCCCcchhhHHHHHHHhc------CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCC-EEEEEc
Confidence 222233344567789999999999999999999 99999999999999 778889999998776 499999
Q ss_pred HhHHHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAVNF 323 (388)
Q Consensus 308 H~l~~l~~~~d~~~~y 323 (388)
|.|++++..|+|+--+
T Consensus 756 HsMeE~EaLCtR~aIm 771 (885)
T KOG0059|consen 756 HSMEEAEALCTRTAIM 771 (885)
T ss_pred CCHHHHHHHhhhhhee
Confidence 9999999999997444
No 370
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.78 E-value=2.9e-21 Score=179.71 Aligned_cols=72 Identities=19% Similarity=0.194 Sum_probs=60.4
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCCC--ceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNN--RFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALE 314 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p--~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~ 314 (388)
.+.++..|||||+||+.+|++|+. +| +++|+|||+++| ..+...+.++++++. +++++||+++.+
T Consensus 131 ~~~~~~~LSgG~~qrv~laral~~------~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~-tii~itH~~~~~- 202 (226)
T cd03270 131 LSRSAPTLSGGEAQRIRLATQIGS------GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGN-TVLVVEHDEDTI- 202 (226)
T ss_pred ccCccCcCCHHHHHHHHHHHHHHh------CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCC-EEEEEEeCHHHH-
Confidence 467889999999999999999999 87 599999999999 667778877766555 599999999886
Q ss_pred HHHHHHH
Q psy14062 315 PELRKAV 321 (388)
Q Consensus 315 ~~~d~~~ 321 (388)
..||++.
T Consensus 203 ~~~d~i~ 209 (226)
T cd03270 203 RAADHVI 209 (226)
T ss_pred HhCCEEE
Confidence 4677653
No 371
>PLN03140 ABC transporter G family member; Provisional
Probab=99.77 E-value=2.2e-20 Score=211.90 Aligned_cols=182 Identities=12% Similarity=0.074 Sum_probs=125.1
Q ss_pred cccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCC---CCcceeehhh
Q psy14062 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNG---SGKSNVIDSM 176 (388)
Q Consensus 100 ~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpng---SGKs~i~da~ 176 (388)
.+|+|||+.|++ |++++|+|||||||||||++|+ |.+ ++. +|++.++|..
T Consensus 179 ~IL~~vs~~i~~----------------------Ge~~~llGpnGSGKSTLLk~La----G~l-~~~~~~~G~I~~nG~~ 231 (1470)
T PLN03140 179 TILKDASGIIKP----------------------SRMTLLLGPPSSGKTTLLLALA----GKL-DPSLKVSGEITYNGYR 231 (1470)
T ss_pred eeccCCeEEEeC----------------------CeEEEEEcCCCCCHHHHHHHHh----CCC-CCCCcceeEEEECCEe
Confidence 356688888888 9999999999999999999999 887 444 8998877654
Q ss_pred hhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCC----------Ccccc-------cc-----------
Q psy14062 177 LFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKP----------NEEYE-------II----------- 228 (388)
Q Consensus 177 i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~----------~~~~~-------~~----------- 228 (388)
+.-. .. ++.++|++|+...++.+++.+...+...+.+.. ..... .+
T Consensus 232 ~~~~-----~~-~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~ 305 (1470)
T PLN03140 232 LNEF-----VP-RKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEG 305 (1470)
T ss_pred chhh-----cc-cceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhc
Confidence 3210 11 246999999988888777765433221111100 00000 00
Q ss_pred ------CCceEEEEEEee-----eCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhh
Q psy14062 229 ------PGTDLEIARTAF-----YDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKY 292 (388)
Q Consensus 229 ------~~~~l~~~r~~~-----~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l 292 (388)
....+...++.. ..+.....|||||+||+.||++|.. +|+++++|||+++| .++...+
T Consensus 306 ~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~------~p~vlllDEPTsGLDs~t~~~i~~~L 379 (1470)
T PLN03140 306 VKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVG------PTKTLFMDEISTGLDSSTTYQIVKCL 379 (1470)
T ss_pred chhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcC------CCcEEEEeCCCcCccHHHHHHHHHHH
Confidence 000111122221 1245567899999999999999999 99999999999999 7788888
Q ss_pred HHHHHHhhhHHHHHHHhH-HHHHHHHHHH
Q psy14062 293 DEERTEKLTRVQLVETDL-KALEPELRKA 320 (388)
Q Consensus 293 ~el~~e~~~~ii~vtH~l-~~l~~~~d~~ 320 (388)
+++.+....++++++|+. .++...+|++
T Consensus 380 r~la~~~g~Tviis~Hqp~~~i~~lfD~v 408 (1470)
T PLN03140 380 QQIVHLTEATVLMSLLQPAPETFDLFDDI 408 (1470)
T ss_pred HHHHHhcCCEEEEEecCCCHHHHHHhheE
Confidence 888765344599999985 5777776653
No 372
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.77 E-value=1.4e-20 Score=215.22 Aligned_cols=163 Identities=18% Similarity=0.229 Sum_probs=113.0
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|+||||+|++ |++++|+|||||||||||++|+ |++ ++.+|++.+.|
T Consensus 442 l~~i~l~i~~----------------------G~~~~I~G~~GsGKSTLl~~l~----G~~-~~~~G~i~~~g------- 487 (1490)
T TIGR01271 442 LKNISFKLEK----------------------GQLLAVAGSTGSGKSSLLMMIM----GEL-EPSEGKIKHSG------- 487 (1490)
T ss_pred eeeeEEEECC----------------------CCEEEEECCCCCCHHHHHHHHh----CCC-CCCCceEEECC-------
Confidence 5599999999 9999999999999999999999 998 77899976543
Q ss_pred ccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccccc-C----CceEEEEEEee--eCCCCeeeeCCccc
Q psy14062 182 YRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEII-P----GTDLEIARTAF--YDNSSYYTLNGKKV 254 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~-~----~~~l~~~r~~~--~~~~~~~~LSgGq~ 254 (388)
.++|++|++..++. +..++..+... ++ ...+..+ . ...+......+ .-+.....|||||+
T Consensus 488 ---------~iayv~Q~~~l~~~-Ti~eNI~~g~~-~~--~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqk 554 (1490)
T TIGR01271 488 ---------RISFSPQTSWIMPG-TIKDNIIFGLS-YD--EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQR 554 (1490)
T ss_pred ---------EEEEEeCCCccCCc-cHHHHHHhccc-cc--hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHH
Confidence 38999999888764 54443332111 11 0111100 0 00011000011 12455778999999
Q ss_pred cHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhh-hHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 255 HFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGK-YDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 255 qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~-l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
||+.|||||.. +|+++|||||+++| ..+... +..+.+ + .+++++||+++.+.. +|++
T Consensus 555 qRi~lARAl~~------~~~illLDep~saLD~~~~~~i~~~~l~~~~~-~-~tvilvtH~~~~~~~-ad~i 617 (1490)
T TIGR01271 555 ARISLARAVYK------DADLYLLDSPFTHLDVVTEKEIFESCLCKLMS-N-KTRILVTSKLEHLKK-ADKI 617 (1490)
T ss_pred HHHHHHHHHHc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-C-CeEEEEeCChHHHHh-CCEE
Confidence 99999999999 99999999999999 444442 333332 3 369999999998864 6654
No 373
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.76 E-value=3.2e-20 Score=212.86 Aligned_cols=180 Identities=15% Similarity=0.216 Sum_probs=120.7
Q ss_pred cEEEEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
.+.+.+++ .+|++ +.+ |+|+||+|++ |++++|+||||||||||+
T Consensus 636 ~i~~~~~~----~~~~~~~~~~--------l~~isl~i~~----------------------G~~v~IvG~~GsGKSTLl 681 (1522)
T TIGR00957 636 SITVHNAT----FTWARDLPPT--------LNGITFSIPE----------------------GALVAVVGQVGCGKSSLL 681 (1522)
T ss_pred cEEEEEeE----EEcCCCCCce--------eeeeEEEEcC----------------------CCEEEEECCCCCCHHHHH
Confidence 45566665 56864 234 4599999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCC-
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPG- 230 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~- 230 (388)
++|+ |.+ ++.+|++.+.+ .++|++|++..+. .+..++..+... ++ ...+..+..
T Consensus 682 ~~l~----g~~-~~~~G~i~~~g----------------~i~yv~Q~~~l~~-~Ti~eNI~~g~~-~~--~~~~~~~~~~ 736 (1522)
T TIGR00957 682 SALL----AEM-DKVEGHVHMKG----------------SVAYVPQQAWIQN-DSLRENILFGKA-LN--EKYYQQVLEA 736 (1522)
T ss_pred HHHh----CCC-ccCCcEEEECC----------------EEEEEcCCccccC-CcHHHHhhcCCc-cC--HHHHHHHHHH
Confidence 9999 998 77899976542 4899999987654 344443322111 11 111111000
Q ss_pred ----ceEEEE--EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHH--H
Q psy14062 231 ----TDLEIA--RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEER--T 297 (388)
Q Consensus 231 ----~~l~~~--r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~--~ 297 (388)
..+... +....-+.....|||||+||++|||||.. +|+++|||||+++| +.+...+.... .
T Consensus 737 ~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~------~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~ 810 (1522)
T TIGR00957 737 CALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS------NADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVL 810 (1522)
T ss_pred hCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEcCCccccCHHHHHHHHHHHhhhhhhh
Confidence 000000 00011245677899999999999999999 99999999999999 44444443211 1
Q ss_pred HhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 298 EKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 298 e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
.+ .+++++||+++.+.. +|++
T Consensus 811 ~~-~tvIlvTH~~~~l~~-~D~i 831 (1522)
T TIGR00957 811 KN-KTRILVTHGISYLPQ-VDVI 831 (1522)
T ss_pred cC-CEEEEEeCChhhhhh-CCEE
Confidence 23 359999999988765 6654
No 374
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.76 E-value=4.1e-20 Score=174.16 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=55.5
Q ss_pred CeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHH
Q psy14062 245 SYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRK 319 (388)
Q Consensus 245 ~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~ 319 (388)
++..||+||+|++.+|++++.-. ...|+++|+|||+++| ..+.+.+.++.+++. +++++||+.+.+ ..+|+
T Consensus 152 ~~~~LS~G~k~rl~la~al~~~~--~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~-~vi~isH~~~~~-~~~d~ 227 (247)
T cd03275 152 DMDNLSGGEKTMAALALLFAIHS--YQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNF-QFIVISLKEEFF-SKADA 227 (247)
T ss_pred hHHHcCHHHHHHHHHHHHHHHhc--cCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCc-EEEEEECCHHHH-hhCCe
Confidence 45889999999999999998600 0138999999999999 566777777765554 599999996654 56776
Q ss_pred H
Q psy14062 320 A 320 (388)
Q Consensus 320 ~ 320 (388)
+
T Consensus 228 i 228 (247)
T cd03275 228 L 228 (247)
T ss_pred E
Confidence 4
No 375
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.74 E-value=8.9e-16 Score=173.10 Aligned_cols=143 Identities=35% Similarity=0.594 Sum_probs=92.9
Q ss_pred EEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 77 i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
|..|.+.||+||++.+.| +|+ +.+++|+|||||||||++.+|.|
T Consensus 2 i~~l~l~nf~s~~~~~~i-~f~-----------------------------------~~~~~i~G~NGsGKS~ildAi~~ 45 (1164)
T TIGR02169 2 IERIELENFKSFGKKKVI-PFS-----------------------------------KGFTVISGPNGSGKSNIGDAILF 45 (1164)
T ss_pred eeEEEEeCeeeECCeeEE-eec-----------------------------------CCeEEEECCCCCCHHHHHHHHHH
Confidence 678999999999976666 565 77999999999999999999995
Q ss_pred cccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEE
Q psy14062 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIA 236 (388)
Q Consensus 157 ~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (388)
. +|-. +++ .+|+.++.++++.+...++...+.|.+.|.. ....+ + ..+.+.
T Consensus 46 ~----l~~~-~~~----------------~~r~~~~~~~i~~~~~~~~~~~~~v~~~f~~----~~~~~---~-~~~~i~ 96 (1164)
T TIGR02169 46 A----LGLS-SSK----------------AMRAERLSDLISNGKNGQSGNEAYVTVTFKN----DDGKF---P-DELEVV 96 (1164)
T ss_pred H----hccc-hhh----------------hhhhhhHHHhhcccccCCCCceEEEEEEEEc----CCCCC---C-CcEEEE
Confidence 2 2211 122 1233334444443222223456777777732 11111 1 234444
Q ss_pred EEeee--CCC-CeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH
Q psy14062 237 RTAFY--DNS-SYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM 285 (388)
Q Consensus 237 r~~~~--~~~-~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L 285 (388)
|.... .+. +.|.++|..+...++...|..+|++...+. +|+|+.+..+
T Consensus 97 r~~~~~~~~~~~~~~~n~~~~~~~~~~~~l~~~~~~~~~~~-~~~qg~~~~~ 147 (1164)
T TIGR02169 97 RRLKVTDDGKYSYYYLNGQRVRLSEIHDFLAAAGIYPEGYN-VVLQGDVTDF 147 (1164)
T ss_pred EEEEEcCCCCcceEEECCccccHHHHHHHHHHcCCCcCcce-EEecchHHHH
Confidence 43332 334 679999999999999999999999887665 5777555433
No 376
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.74 E-value=4.5e-19 Score=161.69 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=91.7
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIH 213 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~ 213 (388)
..+++|+|||||||||||.+|.+.+.+-......|+ .....+. .|.. ...+.+.|++...++. .
T Consensus 21 ~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~--~~~~~i~-~~~~-----~~~i~~~~~~~~~~~~------~-- 84 (198)
T cd03276 21 PRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGS--SLKDLIK-DGES-----SAKITVTLKNQGLDAN------P-- 84 (198)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccc--cHHHHhh-CCCC-----eEEEEEEEEcCCccCC------c--
Confidence 459999999999999999999842211110000121 0011111 1111 1235566665443320 0
Q ss_pred eccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHH
Q psy14062 214 FAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVL 288 (388)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i 288 (388)
...... .... ..+.. ....+.++..||+||+||+.|+++|+...+ .+|+++|+|||+++| ..+
T Consensus 85 ---~~~~~~---~~~~-~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~--~~p~illlDEP~~glD~~~~~~~ 152 (198)
T cd03276 85 ---LCVLSQ---DMAR-SFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEV--MESPFRCLDEFDVFMDMVNRKIS 152 (198)
T ss_pred ---CCHHHH---HHHH-HHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcc--cCCCEEEecCcccccCHHHHHHH
Confidence 000000 0000 11111 233467889999999999999999952100 189999999999999 556
Q ss_pred HhhhHHHHHH--hhhHHHHHHHhHHHHHHHHHHH
Q psy14062 289 YGKYDEERTE--KLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 289 ~~~l~el~~e--~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
...+.+...+ +..++++++|+++.+... |++
T Consensus 153 ~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v 185 (198)
T cd03276 153 TDLLVKEAKKQPGRQFIFITPQDISGLASS-DDV 185 (198)
T ss_pred HHHHHHHHhcCCCcEEEEEECCcccccccc-cce
Confidence 6677666543 233588999999988765 544
No 377
>PTZ00243 ABC transporter; Provisional
Probab=99.73 E-value=2.1e-19 Score=206.08 Aligned_cols=163 Identities=14% Similarity=0.218 Sum_probs=110.7
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|+||||+|++ |++++|+|||||||||||++|+ |++ ++.+|++.+
T Consensus 676 L~~isl~i~~----------------------G~~~~IiG~nGsGKSTLL~~i~----G~~-~~~~G~i~~--------- 719 (1560)
T PTZ00243 676 LRDVSVSVPR----------------------GKLTVVLGATGSGKSTLLQSLL----SQF-EISEGRVWA--------- 719 (1560)
T ss_pred EeeeEEEECC----------------------CCEEEEECCCCCcHHHHHHHHh----cCC-CCCCcEEEE---------
Confidence 4599999999 9999999999999999999999 988 777998643
Q ss_pred ccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccccc-C----CceEEEE--EEeeeCCCCeeeeCCccc
Q psy14062 182 YRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEII-P----GTDLEIA--RTAFYDNSSYYTLNGKKV 254 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~-~----~~~l~~~--r~~~~~~~~~~~LSgGq~ 254 (388)
...++|++|++..+. .+..++..++.. .+ ...+... . ...+... +.....+.....|||||+
T Consensus 720 -------~~~i~yv~Q~~~l~~-~Tv~enI~~~~~-~~--~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQk 788 (1560)
T PTZ00243 720 -------ERSIAYVPQQAWIMN-ATVRGNILFFDE-ED--AARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQK 788 (1560)
T ss_pred -------CCeEEEEeCCCccCC-CcHHHHHHcCCh-hh--HHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHH
Confidence 135999999987764 344444332211 00 0001000 0 0000000 111123566789999999
Q ss_pred cHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhh-hHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 255 HFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGK-YDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 255 qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~-l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
||+.|||+|.. +|+++|||||+++| +.+... +.... .+. +++++||+++.+. .+|++
T Consensus 789 qRvaLARAl~~------~p~illLDEP~saLD~~~~~~i~~~~~~~~~-~~~-TvIlvTH~~~~~~-~ad~i 851 (1560)
T PTZ00243 789 ARVSLARAVYA------NRDVYLLDDPLSALDAHVGERVVEECFLGAL-AGK-TRVLATHQVHVVP-RADYV 851 (1560)
T ss_pred HHHHHHHHHhc------CCCEEEEcCccccCCHHHHHHHHHHHHHHhh-CCC-EEEEEeCCHHHHH-hCCEE
Confidence 99999999999 99999999999999 233332 22222 233 5999999999875 46654
No 378
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.73 E-value=7.6e-20 Score=159.09 Aligned_cols=177 Identities=17% Similarity=0.188 Sum_probs=119.7
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIH 213 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~ 213 (388)
|++.-+||||||||||||..++ |++ ++||.+.+.|..+.... ...+ ++..+|+-|.....+.+.+.....
T Consensus 25 Ge~~HliGPNGaGKSTLLA~lA----Gm~--~~sGsi~~~G~~l~~~~--~~eL-ArhRAYLsQqq~p~f~mpV~~YL~- 94 (248)
T COG4138 25 GEILHLVGPNGAGKSTLLARMA----GMT--SGSGSIQFAGQPLEAWS--ATEL-ARHRAYLSQQQTPPFAMPVWHYLT- 94 (248)
T ss_pred ceEEEEECCCCccHHHHHHHHh----CCC--CCCceEEECCcchhHHh--HhHH-HHHHHHHhhccCCcchhhhhhhhh-
Confidence 9999999999999999999999 987 47999888887654321 1222 234577777655433333322111
Q ss_pred eccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCC-CCceEEeccchhhH----HHH
Q psy14062 214 FAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLL-NNRFLILQEPIAKM----EVL 288 (388)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~-~p~~LLlDEP~s~L----e~i 288 (388)
++-........+. ......++.++.+++...||||+-||+.+|..+..+.-+.. ..+++|+|||.++| +..
T Consensus 95 ---L~qP~~~~a~~i~-~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~a 170 (248)
T COG4138 95 ---LHQPDKTRTELLN-DVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSA 170 (248)
T ss_pred ---hcCchHHHHHHHH-HHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHH
Confidence 1111111111111 11223345566788999999999999999988877666652 23789999999999 222
Q ss_pred -HhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14062 289 -YGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLE 325 (388)
Q Consensus 289 -~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y~~ 325 (388)
-.++.+++..+.+ |++..||++.--+.++++.-..+
T Consensus 171 Ldrll~~~c~~G~~-vims~HDLNhTLrhA~~~wLL~r 207 (248)
T COG4138 171 LDRLLSALCQQGLA-IVMSSHDLNHTLRHAHRAWLLKR 207 (248)
T ss_pred HHHHHHHHHhCCcE-EEEeccchhhHHHHHHHHHHHhc
Confidence 2366677778876 99999999999999998865543
No 379
>PLN03130 ABC transporter C family member; Provisional
Probab=99.72 E-value=1.5e-18 Score=199.50 Aligned_cols=163 Identities=19% Similarity=0.287 Sum_probs=109.2
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCC-Ccceeehhhhhhc
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGS-GKSNVIDSMLFVF 180 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngS-GKs~i~da~i~vl 180 (388)
|+||||+|++ |+.++|+||||||||||+++|. |.+ ++.+ |++.+
T Consensus 633 L~~inl~i~~----------------------Ge~vaIvG~sGSGKSTLl~lLl----G~~-~~~~GG~I~l-------- 677 (1622)
T PLN03130 633 LSNINLDVPV----------------------GSLVAIVGSTGEGKTSLISAML----GEL-PPRSDASVVI-------- 677 (1622)
T ss_pred eeceeEEecC----------------------CCEEEEECCCCCCHHHHHHHHH----Hhh-ccCCCceEEE--------
Confidence 4599999999 9999999999999999999999 988 7778 88542
Q ss_pred CccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCC-----ceEEEE--EEeeeCCCCeeeeCCcc
Q psy14062 181 GYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPG-----TDLEIA--RTAFYDNSSYYTLNGKK 253 (388)
Q Consensus 181 g~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~-----~~l~~~--r~~~~~~~~~~~LSgGq 253 (388)
| ..++|++|++..+.. +..++..+... ++ ++.+..+-. ..+... +....-+.....|||||
T Consensus 678 -------~-~~Iayv~Q~p~Lfng-TIreNI~fg~~-~d--~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQ 745 (1622)
T PLN03130 678 -------R-GTVAYVPQVSWIFNA-TVRDNILFGSP-FD--PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQ 745 (1622)
T ss_pred -------c-CeEEEEcCccccCCC-CHHHHHhCCCc-cc--HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHH
Confidence 2 359999999988765 44443332211 11 111111000 000000 00111234566799999
Q ss_pred ccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHh-hhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 254 VHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYG-KYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 254 ~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~-~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
+||++|||||.. +|+++|||||+|+| ..+.. .+.... .+. |++++||++..+. .+|++
T Consensus 746 KQRIaLARAly~------~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~k-TvIlVTH~l~~l~-~aD~I 809 (1622)
T PLN03130 746 KQRVSMARAVYS------NSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGK-TRVLVTNQLHFLS-QVDRI 809 (1622)
T ss_pred HHHHHHHHHHhC------CCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCC-EEEEEECCHhHHH-hCCEE
Confidence 999999999999 99999999999999 22322 232222 233 5999999997654 45644
No 380
>PLN03232 ABC transporter C family member; Provisional
Probab=99.72 E-value=1.4e-18 Score=199.17 Aligned_cols=164 Identities=18% Similarity=0.264 Sum_probs=108.4
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|+|+||+|++ |+.++|+||||||||||+++|. |.+ ++.+|.+.
T Consensus 633 L~~inl~i~~----------------------Ge~vaIvG~sGSGKSTLl~lLl----G~~-~~~~G~i~---------- 675 (1495)
T PLN03232 633 LSDINLEIPV----------------------GSLVAIVGGTGEGKTSLISAML----GEL-SHAETSSV---------- 675 (1495)
T ss_pred eeeeEEEEcC----------------------CCEEEEECCCCCcHHHHHHHHh----CCC-cccCCCEE----------
Confidence 4599999999 9999999999999999999999 888 66677641
Q ss_pred ccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCC-----ceEEEE--EEeeeCCCCeeeeCCccc
Q psy14062 182 YRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPG-----TDLEIA--RTAFYDNSSYYTLNGKKV 254 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~-----~~l~~~--r~~~~~~~~~~~LSgGq~ 254 (388)
.+| ..++|++|++..+.. +..++..+... + .++.+..+-. ..+... +....-+.....|||||+
T Consensus 676 ----~~~-~~Iayv~Q~p~Lf~g-TIreNI~fg~~-~--~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 746 (1495)
T PLN03232 676 ----VIR-GSVAYVPQVSWIFNA-TVRENILFGSD-F--ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQK 746 (1495)
T ss_pred ----Eec-CcEEEEcCccccccc-cHHHHhhcCCc-c--CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHH
Confidence 122 459999999988865 44433332211 1 1111111000 000000 000112345668999999
Q ss_pred cHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhh-hHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 255 HFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGK-YDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 255 qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~-l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
||++||||+.. +|+++|||||+++| ..+... +.... .+. |++++||++..+. .+|++
T Consensus 747 QRIaLARAly~------~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~k-T~IlvTH~~~~l~-~aD~I 809 (1495)
T PLN03232 747 QRVSMARAVYS------NSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGK-TRVLVTNQLHFLP-LMDRI 809 (1495)
T ss_pred HHHHHHHHHhc------CCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cCC-EEEEEECChhhHH-hCCEE
Confidence 99999999999 99999999999999 223322 22221 233 5899999997654 46653
No 381
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.71 E-value=1.3e-17 Score=149.42 Aligned_cols=162 Identities=26% Similarity=0.380 Sum_probs=102.0
Q ss_pred EEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 77 i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
|..+++.||++|++..+. ++. +.+++|+|||||||||+|.+|++
T Consensus 1 i~~i~l~nf~~~~~~~~~-~~~-----------------------------------~~~~~i~G~NGsGKSnil~Ai~~ 44 (178)
T cd03239 1 IKQITLKNFKSYRDETVV-GGS-----------------------------------NSFNAIVGPNGSGKSNIVDAICF 44 (178)
T ss_pred CcEEEEECccCCCCCEEe-cCC-----------------------------------CceEEEECCCCCCHHHHHHHHHH
Confidence 357889999999876653 221 34999999999999999999994
Q ss_pred cccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEE
Q psy14062 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIA 236 (388)
Q Consensus 157 ~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (388)
+ . .|++.-. + +...+.+ . .....++...++|.+.|.+. ..
T Consensus 45 ---~-~----~~~~~~~-------~------~~~~~~~-~-~~~~~~~~~~~~v~~~f~~~-------~~---------- 84 (178)
T cd03239 45 ---V-L----GGKAAKL-------R------RGSLLFL-A-GGGVKAGINSASVEITFDKS-------YF---------- 84 (178)
T ss_pred ---H-c----Ccccccc-------c------Ccchhhh-c-ccccCCCCceEEEEEEEECc-------eE----------
Confidence 2 2 1221100 0 0011100 1 11123455677788777421 00
Q ss_pred EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHH
Q psy14062 237 RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLK 311 (388)
Q Consensus 237 r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~ 311 (388)
+ ...+...--||+||+|++.++++++.... .+|+++|+|||+++| ..+...+.++...+. +++++||+.+
T Consensus 85 -~-~~~~~~~~~LS~Ge~~r~~Laral~~~~~--~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~-tiIiiSH~~~ 159 (178)
T cd03239 85 -L-VLQGKVEQILSGGEKSLSALALIFALQEI--KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTS-QFIVITLKKE 159 (178)
T ss_pred -E-ecCCcCcccCCHHHHHHHHHHHHHHHhcC--CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEECCHH
Confidence 0 11122222299999999999999973111 179999999999999 556667766655433 5999999987
Q ss_pred HHHHHHHHH
Q psy14062 312 ALEPELRKA 320 (388)
Q Consensus 312 ~l~~~~d~~ 320 (388)
.+. .+|++
T Consensus 160 ~~~-~adrv 167 (178)
T cd03239 160 MFE-NADKL 167 (178)
T ss_pred HHh-hCCeE
Confidence 664 45543
No 382
>KOG0927|consensus
Probab=99.70 E-value=1.6e-18 Score=173.11 Aligned_cols=193 Identities=16% Similarity=0.163 Sum_probs=118.1
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
|.++..++. | .|.+...+ +++++|-|.. ++.+++||||||||||||+
T Consensus 388 pvi~~~nv~---F-~y~~~~~i-------y~~l~fgid~----------------------~srvAlVGPNG~GKsTLlK 434 (614)
T KOG0927|consen 388 PVIMVQNVS---F-GYSDNPMI-------YKKLNFGIDL----------------------DSRVALVGPNGAGKSTLLK 434 (614)
T ss_pred CeEEEeccc---c-CCCCcchh-------hhhhhcccCc----------------------ccceeEecCCCCchhhhHH
Confidence 355555555 4 47766432 3499999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCce
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~ 232 (388)
++. |.+ .+..|.+.--... .+++.-|+....-.+.......+. ..+... ...+... ..
T Consensus 435 l~~----gdl-~p~~G~vs~~~H~--------------~~~~y~Qh~~e~ldl~~s~le~~~-~~~~~~-~~~e~~r-~i 492 (614)
T KOG0927|consen 435 LIT----GDL-QPTIGMVSRHSHN--------------KLPRYNQHLAEQLDLDKSSLEFMM-PKFPDE-KELEEMR-SI 492 (614)
T ss_pred HHh----hcc-ccccccccccccc--------------cchhhhhhhHhhcCcchhHHHHHH-Hhcccc-chHHHHH-HH
Confidence 999 888 4457764221111 122111211110011111011111 001100 0000000 01
Q ss_pred EEEEEE-eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-HHHHhhhHHHHHHhhhHHHHHHHhH
Q psy14062 233 LEIART-AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-EVLYGKYDEERTEKLTRVQLVETDL 310 (388)
Q Consensus 233 l~~~r~-~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-e~i~~~l~el~~e~~~~ii~vtH~l 310 (388)
+..+++ ......+...||+||+.|+.+|+++.. .|.+|||||||++| -+-++.+.+...+....+++++||+
T Consensus 493 lgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~k------qP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDf 566 (614)
T KOG0927|consen 493 LGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVK------QPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDF 566 (614)
T ss_pred HHHhCCCccccccchhhcccccchhHHHHHHHhc------CCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechh
Confidence 111111 123456788999999999999999999 99999999999999 3334444454455444699999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14062 311 KALEPELRKAVNFLEL 326 (388)
Q Consensus 311 ~~l~~~~d~~~~y~~~ 326 (388)
..+.++++++......
T Consensus 567 rlI~qVaeEi~~c~~~ 582 (614)
T KOG0927|consen 567 RLISQVAEEIWVCENG 582 (614)
T ss_pred hHHHHHHHHhHhhccC
Confidence 9999999998777553
No 383
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.8e-18 Score=166.98 Aligned_cols=171 Identities=16% Similarity=0.200 Sum_probs=111.9
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|.++||+++. |+.++|+||+|+||||+++++.+.++ +| ||.+.++|.+++...
T Consensus 279 L~~isf~i~~----------------------g~tvAiVg~SG~gKsTI~rllfRFyD----~~-sG~I~id~qdir~vt 331 (497)
T COG5265 279 LNGISFTIPL----------------------GKTVAIVGESGAGKSTILRLLFRFYD----VN-SGSITIDGQDIRDVT 331 (497)
T ss_pred hcCccccccC----------------------ccEEEEEeCCCCcHHHHHHHHHHHhC----Cc-CceEEEcchhHHHhH
Confidence 3499999999 99999999999999999999995443 44 999999999988542
Q ss_pred ccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccC----CceEEEE--EEeeeCCCCeeeeCCccc
Q psy14062 182 YRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIP----GTDLEIA--RTAFYDNSSYYTLNGKKV 254 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~----~~~l~~~--r~~~~~~~~~~~LSgGq~ 254 (388)
...+|+ -||++||+..+|......++.+.-. +....+ ..... ...+... +....-+.....||||++
T Consensus 332 --q~slR~-aIg~VPQDtvLFNDti~yni~ygr~---~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggek 405 (497)
T COG5265 332 --QQSLRR-AIGIVPQDTVLFNDTIAYNIKYGRP---DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEK 405 (497)
T ss_pred --HHHHHH-HhCcCcccceehhhhHHHHHhccCc---cccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchH
Confidence 233554 4999999987765433222221100 000000 00000 0000000 111122567789999999
Q ss_pred cHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHH
Q psy14062 255 HFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKAL 313 (388)
Q Consensus 255 qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l 313 (388)
||++|||++.. +|+++++||.||+| .+|...+++... +.+ -+++.|.+..+
T Consensus 406 qrvaiar~ilk------~p~il~~deatsaldt~te~~iq~~l~~~~~-~rt-tlviahrlsti 461 (497)
T COG5265 406 QRVAIARTILK------NPPILILDEATSALDTHTEQAIQAALREVSA-GRT-TLVIAHRLSTI 461 (497)
T ss_pred HHHHHHHHHhc------CCCEEEEehhhhHhhhhHHHHHHHHHHHHhC-CCe-EEEEeehhhhc
Confidence 99999999999 99999999999999 334445555543 333 44556665543
No 384
>KOG0061|consensus
Probab=99.69 E-value=1.2e-18 Score=183.22 Aligned_cols=169 Identities=16% Similarity=0.152 Sum_probs=115.5
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcC--CCCCcceeehhhhhh
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGP--NGSGKSNVIDSMLFV 179 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGp--ngSGKs~i~da~i~v 179 (388)
|++||..+.+ |+++||+|||||||||||++++ |-... .-+|++.++|...
T Consensus 46 L~~vsg~~~~----------------------Gel~AimG~SGsGKtTLL~~La----gr~~~~~~~~G~ilvNG~~~-- 97 (613)
T KOG0061|consen 46 LKGVSGTAKP----------------------GELLAIMGPSGSGKTTLLNALA----GRLNGGLKLSGEILLNGRPR-- 97 (613)
T ss_pred eeCcEEEEec----------------------CeEEEEECCCCCCHHHHHHHHh----ccccCCCcceEEEEECCccC--
Confidence 4599999999 9999999999999999999999 76632 2478866655211
Q ss_pred cCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCC---C-CccccccCC--ceEEEEEEe--eeCCCCeeeeCC
Q psy14062 180 FGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK---P-NEEYEIIPG--TDLEIARTA--FYDNSSYYTLNG 251 (388)
Q Consensus 180 lg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~---~-~~~~~~~~~--~~l~~~r~~--~~~~~~~~~LSg 251 (388)
..+.-.+..+||.|+...++.+|+.|...+.+.+.-. . ....+.++. .++.+.+.. ...+.....+||
T Consensus 98 ----~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 98 ----DSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred ----chhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 1222234589999999999999987754432222111 1 111111111 011111111 111222367999
Q ss_pred ccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHh
Q psy14062 252 KKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETD 309 (388)
Q Consensus 252 Gq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~ 309 (388)
|+++|+.||.-|.. +|.++++||||++| .+++..++++.+++. +|++.-|+
T Consensus 174 GErkRvsia~Ell~------~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~gr-tVi~tIHQ 229 (613)
T KOG0061|consen 174 GERKRVSIALELLT------DPSILFLDEPTSGLDSFSALQVVQLLKRLARSGR-TVICTIHQ 229 (613)
T ss_pred chhhHHHHHHHHHc------CCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCC-EEEEEEeC
Confidence 99999999999999 99999999999999 778889999988855 37666665
No 385
>KOG0979|consensus
Probab=99.67 E-value=9e-15 Score=153.90 Aligned_cols=235 Identities=22% Similarity=0.297 Sum_probs=162.1
Q ss_pred EEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 76 IITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 76 ~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.|..|+++||..|.-.. +.|= ..+..|||||||||||++++||
T Consensus 21 sIvrI~l~NF~Ty~~~e-~~pg------------------------------------psLNmIiGpNGSGKSSiVcAIc 63 (1072)
T KOG0979|consen 21 SIVRIELHNFLTYDHTE-FLPG------------------------------------PSLNMIIGPNGSGKSSIVCAIC 63 (1072)
T ss_pred ceEEEEEeeeeeeeeee-ecCC------------------------------------CceeeEECCCCCCchHHHHHHH
Confidence 46789999999997433 3221 6899999999999999999999
Q ss_pred hcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEE
Q psy14062 156 FRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEI 235 (388)
Q Consensus 156 ~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~ 235 (388)
. |+=|+| -++| |++.++..+.. +.+...|.+.+.. . ...+.+
T Consensus 64 L---glgG~P------------k~lG------Rak~VgeyIK~-----G~~~g~IEI~l~~---~---------~e~~~I 105 (1072)
T KOG0979|consen 64 L---GLGGKP------------KLLG------RAKKVGEYIKR-----GEDEGYIEIELKD---K---------DETLTI 105 (1072)
T ss_pred H---HcCCCh------------hhcc------chhHHHHHHhc-----CCccceEEEEEec---C---------CCceEE
Confidence 4 333332 1223 33445533322 2233444444321 1 236778
Q ss_pred EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH------------------HHHHhh---hHH
Q psy14062 236 ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM------------------EVLYGK---YDE 294 (388)
Q Consensus 236 ~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L------------------e~i~~~---l~e 294 (388)
+|.+...+.+.|.+|+.......|....+.++|+++++.-+|.|+.+..+ +++... |.+
T Consensus 106 tR~I~~~k~S~y~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~ 185 (1072)
T KOG0979|consen 106 TRLISRDKESKYFINDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMD 185 (1072)
T ss_pred EEEEeecCCcceeeccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 89998888899999999999999999999999999999999999665433 112222 222
Q ss_pred HHH----------HhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14062 295 ERT----------EKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELT 364 (388)
Q Consensus 295 l~~----------e~~~~ii~vtH~l~~l~~~~d~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~el~ 364 (388)
++. .+..++.-+....+.+++..+++.+...+...++-++...-|-.+.+...++.++....+.+.+++.
T Consensus 186 lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r 265 (1072)
T KOG0979|consen 186 LREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELR 265 (1072)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHH
Confidence 221 1223355556666777777777777788888888887777777777778888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy14062 365 ANLESIKKCTDEMESAKTELK 385 (388)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~ 385 (388)
.+.++...+....++++.+..
T Consensus 266 ~l~k~~~pi~~~~eeLe~~~~ 286 (1072)
T KOG0979|consen 266 KLEKEIKPIEDKKEELESEKK 286 (1072)
T ss_pred HHHHhhhhhhhhhhhHHhHHH
Confidence 777777777777776666443
No 386
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.66 E-value=1.3e-18 Score=164.68 Aligned_cols=71 Identities=20% Similarity=0.214 Sum_probs=59.6
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCC---CceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLN---NRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKAL 313 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~---p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l 313 (388)
.+++...|||||+||+.+|++|.. + |+++|||||+++| ..+.+.+.++++.+. +++++||+++.+
T Consensus 163 l~~~~~~LSgGe~QRl~LAraL~~------~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~-tvIiitH~~~~i 235 (261)
T cd03271 163 LGQPATTLSGGEAQRIKLAKELSK------RSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGN-TVVVIEHNLDVI 235 (261)
T ss_pred hcCccccCCHHHHHHHHHHHHHhc------CCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEeCCHHHH
Confidence 467889999999999999999998 5 6899999999999 667778877776655 499999999887
Q ss_pred HHHHHHH
Q psy14062 314 EPELRKA 320 (388)
Q Consensus 314 ~~~~d~~ 320 (388)
+ .+|++
T Consensus 236 ~-~aD~i 241 (261)
T cd03271 236 K-CADWI 241 (261)
T ss_pred H-hCCEE
Confidence 5 45543
No 387
>KOG0062|consensus
Probab=99.66 E-value=7.2e-17 Score=160.48 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=63.5
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
...+...||||-+-|+++||||-. +|++|||||||+.| -..+..|..+-.....|+++|+||...+...|..+
T Consensus 192 q~~pt~slSGGWrMrlaLARAlf~------~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdI 265 (582)
T KOG0062|consen 192 QLQPTKSLSGGWRMRLALARALFA------KPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDI 265 (582)
T ss_pred HhccccccCcchhhHHHHHHHHhc------CCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHH
Confidence 456788999999999999999999 99999999999999 22222333333333346999999999999999999
Q ss_pred HHHHH
Q psy14062 321 VNFLE 325 (388)
Q Consensus 321 ~~y~~ 325 (388)
+.|..
T Consensus 266 IH~~~ 270 (582)
T KOG0062|consen 266 IHLEN 270 (582)
T ss_pred HHHhh
Confidence 99877
No 388
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.64 E-value=6.1e-17 Score=149.24 Aligned_cols=77 Identities=12% Similarity=0.048 Sum_probs=57.3
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH-hhhHHHHHHHhHHHHHH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE-KLTRVQLVETDLKALEP 315 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e-~~~~ii~vtH~l~~l~~ 315 (388)
...++..||+||+|+..++.+|+...+ .+|+++|+|||+++| ..+...+.+..++ +..+++++||++.....
T Consensus 120 ~~~~~~~LS~G~~q~~~i~~~la~~~~--~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~ 197 (213)
T cd03277 120 QELDPHHQSGGERSVSTMLYLLSLQEL--TRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLN 197 (213)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhc--cCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCc
Confidence 355788999999999888776653111 179999999999999 6666777777655 43358999999877776
Q ss_pred HHHHH
Q psy14062 316 ELRKA 320 (388)
Q Consensus 316 ~~d~~ 320 (388)
.++++
T Consensus 198 ~~~~~ 202 (213)
T cd03277 198 YHEKM 202 (213)
T ss_pred ccCce
Confidence 66543
No 389
>KOG0054|consensus
Probab=99.64 E-value=1.4e-16 Score=176.32 Aligned_cols=195 Identities=16% Similarity=0.188 Sum_probs=128.7
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
..+.+++++ .+|.... ..+|+||||+|.+ |+-+||||..|||||||+.
T Consensus 1137 G~I~f~~~~----~RYrp~l------p~VLk~is~~I~p----------------------~eKVGIVGRTGaGKSSL~~ 1184 (1381)
T KOG0054|consen 1137 GEIEFEDLS----LRYRPNL------PLVLKGISFTIKP----------------------GEKVGIVGRTGAGKSSLIL 1184 (1381)
T ss_pred CeEEEEEeE----EEeCCCC------cchhcCceEEEcC----------------------CceEEEeCCCCCCHHHHHH
Confidence 467777777 7787541 2346799999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCC--
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPG-- 230 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~-- 230 (388)
++. .++ ++.+|++.|+|.++.-.|. ..+|+ +++.+||+|.+|.+. ...+.-.|....| +.-.+..+.
T Consensus 1185 aLF----Rl~-e~~~G~I~IDgvdI~~igL--~dLRs-rlsIIPQdPvLFsGT-vR~NLDPf~e~sD--~~IW~ALe~~~ 1253 (1381)
T KOG0054|consen 1185 ALF----RLV-EPAEGEILIDGVDISKIGL--HDLRS-RLSIIPQDPVLFSGT-VRFNLDPFDEYSD--DEIWEALERCQ 1253 (1381)
T ss_pred HHH----Hhc-CccCCeEEEcCeecccccH--HHHHh-cCeeeCCCCceecCc-cccccCcccccCH--HHHHHHHHHhC
Confidence 999 777 5569999999988765553 45665 599999999988653 3333322211101 000000000
Q ss_pred --ceEE-E-EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhHHHHH-hhhHHH-HHH-hhhHH
Q psy14062 231 --TDLE-I-ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKMEVLY-GKYDEE-RTE-KLTRV 303 (388)
Q Consensus 231 --~~l~-~-~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~Le~i~-~~l~el-~~e-~~~~i 303 (388)
..+. . .++...-......+|-||+|.+|+||||.. ++++|||||.||+++.-- .++.+- |++ ...||
T Consensus 1254 Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr------~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTV 1327 (1381)
T KOG0054|consen 1254 LKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR------KSKILVLDEATASVDPETDALIQKTIREEFKDCTV 1327 (1381)
T ss_pred hHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc------cCCEEEEecccccCChHHHHHHHHHHHHHhcCCeE
Confidence 0000 0 001111123456789999999999999999 999999999999992222 222222 211 22368
Q ss_pred HHHHHhHHHHHHH
Q psy14062 304 QLVETDLKALEPE 316 (388)
Q Consensus 304 i~vtH~l~~l~~~ 316 (388)
+.+.|.++.+...
T Consensus 1328 ltIAHRl~TVmd~ 1340 (1381)
T KOG0054|consen 1328 LTIAHRLNTVMDS 1340 (1381)
T ss_pred EEEeeccchhhhc
Confidence 8889988777653
No 390
>KOG0054|consensus
Probab=99.59 E-value=3e-16 Score=173.79 Aligned_cols=161 Identities=20% Similarity=0.273 Sum_probs=108.3
Q ss_pred ccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhc
Q psy14062 101 EVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVF 180 (388)
Q Consensus 101 ~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vl 180 (388)
.|+||||+|++ |+.+||+||-|||||+||.+|. |-+ +.-+|++.+.|
T Consensus 536 tL~dIn~~i~~----------------------G~lvaVvG~vGsGKSSLL~AiL----GEm-~~~sG~v~v~g------ 582 (1381)
T KOG0054|consen 536 TLKDINFEIKK----------------------GQLVAVVGPVGSGKSSLLSAIL----GEM-PKLSGSVAVNG------ 582 (1381)
T ss_pred cccceeEEecC----------------------CCEEEEECCCCCCHHHHHHHHh----cCc-ccccceEEEcC------
Confidence 57799999999 9999999999999999999999 888 66799854432
Q ss_pred CccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCC-----ceEEEEEEe--eeCCCCeeeeCCcc
Q psy14062 181 GYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPG-----TDLEIARTA--FYDNSSYYTLNGKK 253 (388)
Q Consensus 181 g~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~-----~~l~~~r~~--~~~~~~~~~LSgGq 253 (388)
.++|++|.|..+.+ +..++.++- .-+ ....|+.+-. ..+++.-.. ..-+.....|||||
T Consensus 583 ----------siaYv~Q~pWI~ng-TvreNILFG-~~~--d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQ 648 (1381)
T KOG0054|consen 583 ----------SVAYVPQQPWIQNG-TVRENILFG-SPY--DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQ 648 (1381)
T ss_pred ----------eEEEeccccHhhCC-cHHHhhhcC-ccc--cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhH
Confidence 28999998877654 444443321 111 1112221100 001111001 11256788999999
Q ss_pred ccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHH
Q psy14062 254 VHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEP 315 (388)
Q Consensus 254 ~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~ 315 (388)
+||+.+|||+-+ +.++++||.|+|++ ..+.+..-...-.++ |+++|||.++.+.+
T Consensus 649 KqRIsLARAVY~------~adIYLLDDplSAVDahvg~~if~~ci~~~L~~K-T~ILVTHql~~L~~ 708 (1381)
T KOG0054|consen 649 KQRISLARAVYQ------DADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGK-TVILVTHQLQFLPH 708 (1381)
T ss_pred HHHHHHHHHHhc------cCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCC-EEEEEeCchhhhhh
Confidence 999999999999 99999999999999 222221111111123 59999998887764
No 391
>KOG0927|consensus
Probab=99.56 E-value=3e-16 Score=156.87 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=59.2
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-HHHHhhhHHHHHHhhh-HHHHHHHhHHHHHHHHHH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-EVLYGKYDEERTEKLT-RVQLVETDLKALEPELRK 319 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-e~i~~~l~el~~e~~~-~ii~vtH~l~~l~~~~d~ 319 (388)
..+....+|||++.|..+|++|.. .|.+|+|||||++| -+...-|.++-.+... ++++++|.-+.+-.+|..
T Consensus 215 ~~k~~~~~SgGwrmR~aLAr~Lf~------kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~ 288 (614)
T KOG0927|consen 215 QDKKVKDLSGGWRMRAALARALFQ------KPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTN 288 (614)
T ss_pred HHHHhhccCchHHHHHHHHHHHhc------CCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhh
Confidence 356778899999999999999999 99999999999999 3333333333333222 488999999999999988
Q ss_pred HHHH
Q psy14062 320 AVNF 323 (388)
Q Consensus 320 ~~~y 323 (388)
+...
T Consensus 289 Ii~l 292 (614)
T KOG0927|consen 289 IIHL 292 (614)
T ss_pred hhee
Confidence 7554
No 392
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.56 E-value=1.4e-16 Score=142.53 Aligned_cols=181 Identities=18% Similarity=0.226 Sum_probs=119.8
Q ss_pred ccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhc
Q psy14062 101 EVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVF 180 (388)
Q Consensus 101 ~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vl 180 (388)
++++||+++.+ |++.++||.||||||-+.++|+ |+...| ....|+.|-+
T Consensus 22 ~VD~v~ltlnE----------------------GEi~GLVGESGSGKSLiAK~Ic----~v~kdn-----W~vTADR~Rf 70 (330)
T COG4170 22 AVDRVSMTLNE----------------------GEIRGLVGESGSGKSLIAKAIC----GVNKDN-----WRVTADRMRF 70 (330)
T ss_pred eeeeeeeeecc----------------------ceeeeeeccCCCchhHHHHHHh----cccccc-----eEEEhhhccc
Confidence 35699999999 9999999999999999999999 776332 2233333332
Q ss_pred Cc------cc---hhhhhccceeEecccCCC--CCcceE-----EE-EEEec-cccCC-CCccccccCCceEEEEEEe--
Q psy14062 181 GY------RA---SKIRANKLSVLMHKSDQV--GGVSRC-----SV-AIHFA-QIIDK-PNEEYEIIPGTDLEIARTA-- 239 (388)
Q Consensus 181 g~------~~---~~lr~~~i~~l~q~~~~~--~~~~~~-----eV-~~~~~-~~~~~-~~~~~~~~~~~~l~~~r~~-- 239 (388)
+. .+ +++-++.|+++||+|..- |..+.- ++ ...|. ++... .-.....+ ..+...+..
T Consensus 71 ~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAI--eLLHrVGIKdH 148 (330)
T COG4170 71 DDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAI--ELLHRVGIKDH 148 (330)
T ss_pred ccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHH--HHHHHhccccH
Confidence 21 11 223456789999987531 111100 00 01111 00000 00000000 011111111
Q ss_pred -eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHH
Q psy14062 240 -FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKAL 313 (388)
Q Consensus 240 -~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l 313 (388)
+....++|.|-.|+.|++.||.|++. .|++||.||||.++ .+|..++..+.+...++|++++||+..+
T Consensus 149 kDIM~SYP~ElTeGE~QKVMIA~A~An------qPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~i 222 (330)
T COG4170 149 KDIMRSYPYELTEGECQKVMIAIALAN------QPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMI 222 (330)
T ss_pred HHHHHhCcchhccCcceeeeeehhhcc------CCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHH
Confidence 11246799999999999999999999 99999999999999 6778888888877777899999999999
Q ss_pred HHHHHHH
Q psy14062 314 EPELRKA 320 (388)
Q Consensus 314 ~~~~d~~ 320 (388)
.++||++
T Consensus 223 s~W~d~i 229 (330)
T COG4170 223 SQWADKI 229 (330)
T ss_pred HHHhhhe
Confidence 9999986
No 393
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.55 E-value=7.7e-16 Score=158.40 Aligned_cols=156 Identities=16% Similarity=0.152 Sum_probs=102.8
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|++.||.|++ |+.+.|.||||||||||+|+|+ |+= |-|+|++..-
T Consensus 409 l~~l~~~v~~----------------------G~~llI~G~SG~GKTsLlRaia----GLW-P~g~G~I~~P-------- 453 (604)
T COG4178 409 LSELNFEVRP----------------------GERLLITGESGAGKTSLLRALA----GLW-PWGSGRISMP-------- 453 (604)
T ss_pred eccceeeeCC----------------------CCEEEEECCCCCCHHHHHHHHh----ccC-ccCCCceecC--------
Confidence 5599999999 9999999999999999999999 998 9999985432
Q ss_pred ccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEee------eCCCCeeeeCCcccc
Q psy14062 182 YRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAF------YDNSSYYTLNGKKVH 255 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~------~~~~~~~~LSgGq~q 255 (388)
....+-|++|.|....+ +-.++..++....+.++..... .+...++.. ..+.--..||+|++|
T Consensus 454 ------~~~~~lflpQ~PY~p~G-tLre~l~YP~~~~~~~d~~l~~----vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQ 522 (604)
T COG4178 454 ------ADSALLFLPQRPYLPQG-TLREALCYPNAAPDFSDAELVA----VLHKVGLGDLAERLDEEDRWDRVLSGGEQQ 522 (604)
T ss_pred ------CCCceEEecCCCCCCCc-cHHHHHhCCCCCCCCChHHHHH----HHHHcCcHHHHHHHhccCcHhhhcChhHHH
Confidence 11346788888765433 3333333332110001110000 011111110 111223579999999
Q ss_pred HHHHHHHHHHcCCCCCCCceEEeccchhhH-HHHHhhhHHHHHH--hhhHHHHHHHh
Q psy14062 256 FKEVAKVLRDHGVDLLNNRFLILQEPIAKM-EVLYGKYDEERTE--KLTRVQLVETD 309 (388)
Q Consensus 256 r~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-e~i~~~l~el~~e--~~~~ii~vtH~ 309 (388)
|+++||+|.+ +|++++|||.|++| ++....+.++-++ ...+++-|.|.
T Consensus 523 RlafARilL~------kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr 573 (604)
T COG4178 523 RLAFARLLLH------KPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573 (604)
T ss_pred HHHHHHHHHc------CCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccc
Confidence 9999999999 99999999999999 5555555555444 33457777775
No 394
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.53 E-value=1.3e-15 Score=172.93 Aligned_cols=77 Identities=14% Similarity=0.186 Sum_probs=64.0
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPE 316 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~ 316 (388)
.++++..|||||+||+.||++|+. ...+|+++|||||+++| +.+.+.+.++++++.+ |+++||+++.+ +.
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~---~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~T-VIiIsHdl~~i-~~ 877 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLA---PSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHT-VVIIEHNMHVV-KV 877 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhh---cCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHH-Hh
Confidence 477889999999999999999972 00179999999999999 6777788888776654 99999999988 78
Q ss_pred HHHHHHH
Q psy14062 317 LRKAVNF 323 (388)
Q Consensus 317 ~d~~~~y 323 (388)
+|++...
T Consensus 878 aDrVi~L 884 (1809)
T PRK00635 878 ADYVLEL 884 (1809)
T ss_pred CCEEEEE
Confidence 8877555
No 395
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.53 E-value=1.6e-15 Score=146.71 Aligned_cols=176 Identities=16% Similarity=0.133 Sum_probs=112.7
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|..||++|.+ |+++-|||.||||||||++.+. |+. .|.||.+.++|..+. +
T Consensus 339 vgPiNl~ikr----------------------GelvFliG~NGsGKST~~~LLt----GL~-~PqsG~I~ldg~pV~--~ 389 (546)
T COG4615 339 VGPINLTIKR----------------------GELVFLIGGNGSGKSTLAMLLT----GLY-QPQSGEILLDGKPVS--A 389 (546)
T ss_pred ecceeeEEec----------------------CcEEEEECCCCCcHHHHHHHHh----ccc-CCCCCceeECCccCC--C
Confidence 6689999999 9999999999999999999999 999 677999999887653 3
Q ss_pred ccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEee-e-CCCCeeeeCCccccHHHH
Q psy14062 182 YRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAF-Y-DNSSYYTLNGKKVHFKEV 259 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~-~-~~~~~~~LSgGq~qr~~I 259 (388)
++..+.|. -++-||.+..+|+..-.-+.....+.+ ..+ .. .+++..... . ..-+...||.||++|+++
T Consensus 390 e~ledYR~-LfSavFsDyhLF~~ll~~e~~as~q~i-----~~~--Lq--rLel~~ktsl~d~~fs~~kLStGQkKRlAl 459 (546)
T COG4615 390 EQLEDYRK-LFSAVFSDYHLFDQLLGPEGKASPQLI-----EKW--LQ--RLELAHKTSLNDGRFSNLKLSTGQKKRLAL 459 (546)
T ss_pred CCHHHHHH-HHHHHhhhHhhhHhhhCCccCCChHHH-----HHH--HH--HHHHhhhhcccCCcccccccccchHHHHHH
Confidence 33333443 256667665555432111110000000 000 00 001111111 1 123567899999999999
Q ss_pred HHHHHHcCCCCCCCceEEeccchhhH-----HHHHh-hhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHHH
Q psy14062 260 AKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYG-KYDEERTEKLTRVQLVETDLKALEPELRKAVNFL 324 (388)
Q Consensus 260 a~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~-~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y~ 324 (388)
--|+.. ..+++++||-.+-. ..+.. ++-.+++.+++ |+.+|||- .....+||..++.
T Consensus 460 l~AllE------eR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKT-I~aIsHDd-~YF~~ADrll~~~ 522 (546)
T COG4615 460 LLALLE------ERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKT-IFAISHDD-HYFIHADRLLEMR 522 (546)
T ss_pred HHHHHh------hCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCe-EEEEecCc-hhhhhHHHHHHHh
Confidence 999988 88999999887755 33333 44455666664 99999983 3344455555543
No 396
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.52 E-value=4e-14 Score=130.74 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=42.9
Q ss_pred eeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHH
Q psy14062 247 YTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKAL 313 (388)
Q Consensus 247 ~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l 313 (388)
..+||||+....+|-.|+..... ..+++||||+.+.| ..+..+|.++.++ ..++++||+-..+
T Consensus 135 ~~lSgGEk~~~~Lal~lA~~~~~--~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~--~Q~ii~Th~~~~~ 202 (220)
T PF02463_consen 135 EFLSGGEKSLVALALLLALQRYK--PSPFLILDEVDAALDEQNRKRLADLLKELSKQ--SQFIITTHNPEMF 202 (220)
T ss_dssp TGS-HHHHHHHHHHHHHHHHTCS----SEEEEESTTTTS-HHHHHHHHHHHHHHTTT--SEEEEE-S-HHHH
T ss_pred ccccccccccccccccccccccc--cccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence 47899999999999888865543 45799999999999 4555566655433 2478889985543
No 397
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.52 E-value=8.4e-15 Score=129.28 Aligned_cols=67 Identities=18% Similarity=0.137 Sum_probs=50.7
Q ss_pred eCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHH
Q psy14062 249 LNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRK 319 (388)
Q Consensus 249 LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~ 319 (388)
||+|+++++.++++|..... ..|+++|+|||++++ ..+...+.++..++ .+++++||+.+.+.. +|+
T Consensus 78 lS~G~~~~~~la~~L~~~~~--~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~-~~vii~TH~~~~~~~-~d~ 149 (162)
T cd03227 78 LSGGEKELSALALILALASL--KPRPLYILDEIDRGLDPRDGQALAEAILEHLVKG-AQVIVITHLPELAEL-ADK 149 (162)
T ss_pred ccccHHHHHHHHHHHHhcCC--CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHh-hhh
Confidence 99999999999999986211 257999999999999 44555666655443 358999999987653 454
No 398
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.51 E-value=1.2e-15 Score=154.02 Aligned_cols=182 Identities=16% Similarity=0.201 Sum_probs=131.3
Q ss_pred cccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCcc
Q psy14062 104 QISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYR 183 (388)
Q Consensus 104 ~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~ 183 (388)
||||++.+ |++++|.|-=|||+|-|+++|. |+- +..+|++.++|..+....
T Consensus 277 dvSf~vr~----------------------GEIlGiaGLvGaGRTEl~~~lf----G~~-~~~~G~i~l~G~~v~~~s-- 327 (500)
T COG1129 277 DVSFTVRA----------------------GEILGIAGLVGAGRTELARALF----GAR-PASSGEILLDGKPVRIRS-- 327 (500)
T ss_pred CceeEEeC----------------------CcEEEEeccccCCHHHHHHHHh----CCC-cCCCceEEECCEEccCCC--
Confidence 99999999 9999999999999999999999 866 777999988887654322
Q ss_pred chhhhhccceeEeccc---CCCCCcceEEEE-EE-ecc-----ccCCCCccccccCCceEEEEEE-eeeCCCCeeeeCCc
Q psy14062 184 ASKIRANKLSVLMHKS---DQVGGVSRCSVA-IH-FAQ-----IIDKPNEEYEIIPGTDLEIART-AFYDNSSYYTLNGK 252 (388)
Q Consensus 184 ~~~lr~~~i~~l~q~~---~~~~~~~~~eV~-~~-~~~-----~~~~~~~~~~~~~~~~l~~~r~-~~~~~~~~~~LSgG 252 (388)
+...-...++|++.+. ..+...+..++. +. +.. +.+... +..... ..+...+. ....+.....||||
T Consensus 328 p~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~-e~~~~~-~~~~~l~Ik~~s~~~~v~~LSGG 405 (500)
T COG1129 328 PRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRK-ERALAE-RYIRRLRIKTPSPEQPIGTLSGG 405 (500)
T ss_pred HHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHH-HHHHHH-HHHHhcCcccCCccchhhcCCch
Confidence 2223345789998763 234444444332 21 111 011100 000000 01111111 11234678899999
Q ss_pred cccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 253 KVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 253 q~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
.||++.||+.|.. +|++|||||||.++ .+|..+++++.+++.. |+++|.++.++...|||+.-+
T Consensus 406 NQQKVvlarwL~~------~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~a-il~iSSElpEll~~~DRIlVm 474 (500)
T COG1129 406 NQQKVVLARWLAT------DPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKA-ILMISSELPELLGLSDRILVM 474 (500)
T ss_pred hhhhHHHHHHHhc------CCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCE-EEEEeCChHHHHhhCCEEEEE
Confidence 9999999999999 99999999999999 8999999999999886 999999999999999987543
No 399
>KOG0060|consensus
Probab=99.49 E-value=1.4e-14 Score=146.12 Aligned_cols=165 Identities=19% Similarity=0.195 Sum_probs=107.4
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
++|+||+|+. |+-+.|.||||||||+|+|++. |+= |-.+|++.-- +. |
T Consensus 451 ie~Ls~~V~~----------------------g~~LLItG~sG~GKtSLlRvlg----gLW-p~~~G~l~k~----~~-~ 498 (659)
T KOG0060|consen 451 IENLSLEVPS----------------------GQNLLITGPSGCGKTSLLRVLG----GLW-PSTGGKLTKP----TD-G 498 (659)
T ss_pred eeeeeeEecC----------------------CCeEEEECCCCCchhHHHHHHh----ccc-ccCCCeEEec----cc-C
Confidence 4599999999 9999999999999999999999 887 8788984321 10 1
Q ss_pred ccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCC----CccccccCCceEEEE----EEeeeCC----CCeeee
Q psy14062 182 YRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKP----NEEYEIIPGTDLEIA----RTAFYDN----SSYYTL 249 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~----~~~~~~~~~~~l~~~----r~~~~~~----~~~~~L 249 (388)
. .+.+-+|||.|...-+.-...+.+......... +.+....- ..+.+. |...++. .-...|
T Consensus 499 ~------~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~L-e~v~L~hl~~r~ggld~~~~~dW~dvL 571 (659)
T KOG0060|consen 499 G------PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRIL-ENVQLGHLLEREGGLDQQVDWDWMDVL 571 (659)
T ss_pred C------CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHH-HHhhhhhHHHHhCCCCchhhccHHhhc
Confidence 0 145889999876543311223333221111000 00000000 011111 1122221 123469
Q ss_pred CCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-HHHHhhhHHHHHHhhhHHHHHHHhHH
Q psy14062 250 NGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-EVLYGKYDEERTEKLTRVQLVETDLK 311 (388)
Q Consensus 250 SgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-e~i~~~l~el~~e~~~~ii~vtH~l~ 311 (388)
|+|++||+++||.+-. .|++-||||-|+++ +++.+.+.+..++...|.+-|.|...
T Consensus 572 S~GEqQRLa~ARLfy~------kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkS 628 (659)
T KOG0060|consen 572 SPGEQQRLAFARLFYH------KPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKS 628 (659)
T ss_pred CHHHHHHHHHHHHHhc------CCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHH
Confidence 9999999999999999 99999999999999 88888777766665556888888643
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.48 E-value=2.7e-15 Score=147.52 Aligned_cols=157 Identities=15% Similarity=0.147 Sum_probs=101.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIH 213 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~ 213 (388)
|++++++||||-|||||+++++ |.+ .+++|++ .. -+++|=||.-......++.. +
T Consensus 367 gEvigilGpNgiGKTTFvk~LA----G~i-kPdeg~~----~~-------------~~vSyKPQyI~~~~~gtV~~---~ 421 (591)
T COG1245 367 GEVIGILGPNGIGKTTFVKLLA----GVI-KPDEGSE----ED-------------LKVSYKPQYISPDYDGTVED---L 421 (591)
T ss_pred ceEEEEECCCCcchHHHHHHHh----ccc-cCCCCCC----cc-------------ceEeecceeecCCCCCcHHH---H
Confidence 8999999999999999999999 999 5567751 00 12445454322212222211 1
Q ss_pred eccccCC-CCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HH
Q psy14062 214 FAQIIDK-PNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EV 287 (388)
Q Consensus 214 ~~~~~~~-~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~ 287 (388)
+...... ....+. ....+.-.++.....++...||||+.||++||.+|.. ..+++|||||.+.| -.
T Consensus 422 l~~~~~~~~~~s~~--~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~r------eADlYllDEPSA~LDvEqR~~ 493 (591)
T COG1245 422 LRSAIRSAFGSSYF--KTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSR------EADLYLLDEPSAYLDVEQRII 493 (591)
T ss_pred HHHhhhhhcccchh--HHhhcCccchHHHHhcccccCCchhHHHHHHHHHhcc------ccCEEEecCchhhccHHHHHH
Confidence 1110000 000000 0011222233334567889999999999999999999 99999999999999 22
Q ss_pred HHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 288 LYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 288 i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
++..+++...+...+..+|.||+-.+.-.+|++.-|
T Consensus 494 vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF 529 (591)
T COG1245 494 VAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVF 529 (591)
T ss_pred HHHHHHHHHhhcCceEEEEecceehhhhhhceEEEE
Confidence 444666666665556889999998888777776555
No 401
>KOG0066|consensus
Probab=99.47 E-value=5.3e-15 Score=144.56 Aligned_cols=174 Identities=20% Similarity=0.266 Sum_probs=104.7
Q ss_pred EEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcc
Q psy14062 79 KIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRF 158 (388)
Q Consensus 79 ~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ 158 (388)
.+..++|- |.+...| +.+++|-|.- .+.+|||||||.||||||+++.
T Consensus 588 GlH~VtFg-y~gqkpL-------FkkldFGiDm----------------------dSRiaIVGPNGVGKSTlLkLL~--- 634 (807)
T KOG0066|consen 588 GLHDVTFG-YPGQKPL-------FKKLDFGIDM----------------------DSRIAIVGPNGVGKSTLLKLLI--- 634 (807)
T ss_pred eccccccc-CCCCCch-------hhcccccccc----------------------cceeEEECCCCccHHHHHHHHh---
Confidence 44455554 7555443 2388899888 8899999999999999999999
Q ss_pred cEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEE-EeccccCCCCccccccCCceEEEEE
Q psy14062 159 NAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAI-HFAQIIDKPNEEYEIIPGTDLEIAR 237 (388)
Q Consensus 159 ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~-~~~~~~~~~~~~~~~~~~~~l~~~r 237 (388)
|-+-|+ .|.. +..++-+||+.-|..+-. ++..+... ++.+.+..+..... ..+..++
T Consensus 635 -Gkl~P~-~GE~--------------RKnhrL~iG~FdQh~~E~--L~~Eetp~EyLqr~FNlpyq~AR----K~LG~fG 692 (807)
T KOG0066|consen 635 -GKLDPN-DGEL--------------RKNHRLRIGWFDQHANEA--LNGEETPVEYLQRKFNLPYQEAR----KQLGTFG 692 (807)
T ss_pred -cCCCCC-cchh--------------hccceeeeechhhhhHHh--hccccCHHHHHHHhcCCChHHHH----HHhhhhh
Confidence 777455 5651 111223467655543321 12111111 11122222111110 0122222
Q ss_pred EeeeCC-CCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-HHHHhhhHHHHHHhhhHHHHHHHhHHHH
Q psy14062 238 TAFYDN-SSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-EVLYGKYDEERTEKLTRVQLVETDLKAL 313 (388)
Q Consensus 238 ~~~~~~-~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-e~i~~~l~el~~e~~~~ii~vtH~l~~l 313 (388)
+....+ -....|||||+.|+.+|.+... .|++|||||||..| -+-++.+.+...+...-|++|+||-..+
T Consensus 693 L~sHAHTikikdLSGGQKaRValaeLal~------~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi 764 (807)
T KOG0066|consen 693 LASHAHTIKIKDLSGGQKARVALAELALG------GPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLI 764 (807)
T ss_pred hhhccceEeeeecCCcchHHHHHHHHhcC------CCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEeccccee
Confidence 222222 2456799999999999998888 99999999999999 3344444444444444589999985443
No 402
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.41 E-value=1.1e-14 Score=158.78 Aligned_cols=74 Identities=19% Similarity=0.248 Sum_probs=62.2
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCCC---ceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNN---RFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKAL 313 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p---~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l 313 (388)
.+++...|||||+||+.+|++|.. +| .++|||||+++| +.+...+.++++.+. +|+++||+++.+
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~------~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~-TVIiitH~~~~i 896 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSK------RSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGN-TVVVIEHNLDVI 896 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhc------CCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEecCHHHH
Confidence 467788999999999999999998 77 899999999999 667777877776655 599999999988
Q ss_pred HHHHHHHHHH
Q psy14062 314 EPELRKAVNF 323 (388)
Q Consensus 314 ~~~~d~~~~y 323 (388)
. .+|++...
T Consensus 897 ~-~aD~ii~L 905 (943)
T PRK00349 897 K-TADWIIDL 905 (943)
T ss_pred H-hCCEEEEe
Confidence 5 57766544
No 403
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.39 E-value=4.3e-14 Score=128.98 Aligned_cols=70 Identities=14% Similarity=0.069 Sum_probs=51.2
Q ss_pred CCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHH-hhhHHHHHHhhhHHHHHHHhHHHHHHHH
Q psy14062 244 SSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLY-GKYDEERTEKLTRVQLVETDLKALEPEL 317 (388)
Q Consensus 244 ~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~-~~l~el~~e~~~~ii~vtH~l~~l~~~~ 317 (388)
.....+|+|++|+..+++++ . +|+++|+|||++++ ..+. ..+.++++.+. +++++||+ ..+...+
T Consensus 87 ~~~s~fs~g~~~~~~i~~~~-~------~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~-~vi~~tH~-~~l~~~~ 157 (200)
T cd03280 87 QSLSTFSSHMKNIARILQHA-D------PDSLVLLDELGSGTDPVEGAALAIAILEELLERGA-LVIATTHY-GELKAYA 157 (200)
T ss_pred cCcchHHHHHHHHHHHHHhC-C------CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCC-EEEEECCH-HHHHHHH
Confidence 34567899999999998775 4 79999999999999 3343 35555554444 58999998 4566777
Q ss_pred HHHHH
Q psy14062 318 RKAVN 322 (388)
Q Consensus 318 d~~~~ 322 (388)
++...
T Consensus 158 d~~~~ 162 (200)
T cd03280 158 YKREG 162 (200)
T ss_pred hcCCC
Confidence 76543
No 404
>KOG0062|consensus
Probab=99.39 E-value=1.3e-14 Score=144.65 Aligned_cols=185 Identities=17% Similarity=0.130 Sum_probs=114.2
Q ss_pred CCcEEEEEEEeeceEEecCce--eecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhh
Q psy14062 72 GPRLIITKIVAFNFKSYAGYV--TLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSN 149 (388)
Q Consensus 72 ~~~l~i~~l~~~~fksy~~~~--~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKST 149 (388)
+|.+.+..+. ..|.... .+ .++++++.. -+-.+++|+||+||||
T Consensus 360 ~p~l~i~~V~----f~y~p~~y~~~--------~~~~~d~e~----------------------~sRi~~vg~ng~gkst 405 (582)
T KOG0062|consen 360 PPNLRISYVA----FEYTPSEYQWR--------KQLGLDRES----------------------DSRISRVGENGDGKST 405 (582)
T ss_pred CCeeEEEeee----ccCCCcchhhh--------hccCCccch----------------------hhhhheeccCchhHHH
Confidence 3566676666 4464333 33 388888888 7889999999999999
Q ss_pred HHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccC
Q psy14062 150 VIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIP 229 (388)
Q Consensus 150 Ll~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~ 229 (388)
+++++. +=. .+.+|-..+ .++.++++.+|..--+....+..+.+.-...-+....++..
T Consensus 406 ~lKi~~----~~l-~~~rgi~~~--------------~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~-- 464 (582)
T KOG0062|consen 406 LLKILK----GDL-TPTRGIVGR--------------HPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRR-- 464 (582)
T ss_pred HHHHHh----ccC-Ccccceeee--------------cccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHH--
Confidence 999998 532 333554211 12245777666533221222111111100000111111111
Q ss_pred CceEEEEEE-eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-HHHHh-hhHHHHHHhhhHHHHH
Q psy14062 230 GTDLEIART-AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-EVLYG-KYDEERTEKLTRVQLV 306 (388)
Q Consensus 230 ~~~l~~~r~-~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-e~i~~-~l~el~~e~~~~ii~v 306 (388)
-+..+++ ......+...|||||+.|+.+|.+... +|.+|||||||+.| .+-++ +.+.++.-... |++|
T Consensus 465 --hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~------~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GG-Vv~V 535 (582)
T KOG0062|consen 465 --HLGSFGLSGELALQSIASLSGGQKSRVAFAACTWN------NPHLLVLDEPTNHLDRDSLGALAKALKNFNGG-VVLV 535 (582)
T ss_pred --HHHhcCCCchhhhccccccCCcchhHHHHHHHhcC------CCcEEEecCCCccccHHHHHHHHHHHHhcCCc-EEEE
Confidence 1111111 223345688999999999999999998 99999999999999 44444 44444444444 9999
Q ss_pred HHhHHHHHHHHHHH
Q psy14062 307 ETDLKALEPELRKA 320 (388)
Q Consensus 307 tH~l~~l~~~~d~~ 320 (388)
|||.+.+...|+++
T Consensus 536 SHd~~fi~~~c~E~ 549 (582)
T KOG0062|consen 536 SHDEEFISSLCKEL 549 (582)
T ss_pred ECcHHHHhhcCcee
Confidence 99999999998865
No 405
>KOG0250|consensus
Probab=99.39 E-value=6.3e-11 Score=126.75 Aligned_cols=224 Identities=21% Similarity=0.336 Sum_probs=135.7
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIH 213 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~ 213 (388)
..++-|+|+||||||-+|-+|+ --+|..+|+. -|+..+..++.+ +.+++.|.++
T Consensus 62 ~~vNfI~G~NGSGKSAIltAl~----lglG~rAs~t-----------------nRgsslK~lIK~-----G~~~A~IsIt 115 (1074)
T KOG0250|consen 62 PRVNFIVGNNGSGKSAILTALT----LGLGGRASAT-----------------NRGSSLKDLIKD-----GCSSAKISIT 115 (1074)
T ss_pred CCceEeecCCCCcHHHHHHHHH----Hhhccccccc-----------------cchhhHHHHHhC-----CCcceEEEEE
Confidence 4577999999999999999998 3344544443 233444434433 3466777777
Q ss_pred eccccCCCCcccc-ccCCceEEEEEEeeeCCCCeeeeC---Ccc--ccHHHHHHHHHHcCCCCCCCceEEeccchhhH--
Q psy14062 214 FAQIIDKPNEEYE-IIPGTDLEIARTAFYDNSSYYTLN---GKK--VHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-- 285 (388)
Q Consensus 214 ~~~~~~~~~~~~~-~~~~~~l~~~r~~~~~~~~~~~LS---gGq--~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-- 285 (388)
+.+.. .+.+. .+-+..+.+.|.+...+...|.++ |.. .++.+|-.++..++|++.+|-+++-|+..-.+
T Consensus 116 L~N~G---~~Afk~eiyG~~IiIER~I~~~~S~~~~~~~~~grvVStKk~dl~~vv~~f~I~veNP~~~lsQD~aR~FL~ 192 (1074)
T KOG0250|consen 116 LSNSG---LDAFKPEIYGNSIIIERTIRRSSSTYYLLRSANGRVVSTKKEDLDTVVDHFNIQVENPMFVLSQDAARSFLA 192 (1074)
T ss_pred EecCC---cccCChhhcCCeeEEEEeeccccchHHHHhhccCccccccHHHHHHHHHHhCcCCCCcchhhcHHHHHHHHh
Confidence 75321 11111 122357778888877666666663 222 24679999999999999999999888765433
Q ss_pred -----------------HHHHhhhHHH---HHH-------hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14062 286 -----------------EVLYGKYDEE---RTE-------KLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIY 338 (388)
Q Consensus 286 -----------------e~i~~~l~el---~~e-------~~~~ii~vtH~l~~l~~~~d~~~~y~~~~~~~~~~~~~~~ 338 (388)
++|-..+... ... ...++..+...+..++...+.......+...+..|+..+.
T Consensus 193 ~~~p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~ 272 (1074)
T KOG0250|consen 193 NSNPKDKYKLFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMA 272 (1074)
T ss_pred cCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 111 1111222233333333333333334445666677777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14062 339 QYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKT 386 (388)
Q Consensus 339 ~~~l~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~ 386 (388)
|..+.+...++......+...++...++.++++.......+++..+.+
T Consensus 273 W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~te 320 (1074)
T KOG0250|consen 273 WAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTE 320 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 888888888888888888877777777777777766666666644443
No 406
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.38 E-value=3.6e-14 Score=135.90 Aligned_cols=70 Identities=11% Similarity=-0.078 Sum_probs=51.2
Q ss_pred eeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 246 YYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 246 ~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
...||||++||+.+|+++..... ..|+++|+|||+++| ..+.+.+.+... +. +++++||++.. ...+|+.
T Consensus 168 ~~~lS~G~~~r~~la~~~~~~~~--~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~-tii~isH~~~~-~~~~d~~ 242 (276)
T cd03241 168 AKIASGGELSRLMLALKAILARK--DAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SH-QVLCITHLPQV-AAMADNH 242 (276)
T ss_pred hhhcChhHHHHHHHHHHHHHhcC--CCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CC-EEEEEechHHH-HHhcCcE
Confidence 34589999999999986543111 269999999999999 555666666543 33 59999999874 4567654
No 407
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.37 E-value=1.4e-13 Score=137.18 Aligned_cols=203 Identities=14% Similarity=0.130 Sum_probs=142.8
Q ss_pred CCcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 72 GPRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 72 ~~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
.+.+.+.+++ . .....+ .++++|||+|.. |++++|.|-.|-|-+.|+
T Consensus 255 ~~vL~V~~L~----v-~~~~~~------~~v~~vs~~Vr~----------------------GEIvGIAGV~GNGQ~eL~ 301 (501)
T COG3845 255 EVVLEVEDLS----V-KDRRGV------TAVKDVSFEVRA----------------------GEIVGIAGVAGNGQSELV 301 (501)
T ss_pred CeEEEEeeeE----e-ecCCCC------ceeeeeeeEEec----------------------CcEEEEEecCCCCHHHHH
Confidence 4567777777 3 222211 135699999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccC---CCCCcceEEEEEEeccccC----CCC--
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD---QVGGVSRCSVAIHFAQIID----KPN-- 222 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~---~~~~~~~~eV~~~~~~~~~----~~~-- 222 (388)
.+|+ |+. +..+|++.+.+..+ .-...+...|...+++||.+.. ..+.++.+++.+.- .... ...
T Consensus 302 eais----Glr-~~~~G~I~l~G~~v-~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~-~~~~~~~~~~g~l 374 (501)
T COG3845 302 EAIS----GLR-KPASGRILLNGKDV-LGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLG-RHDKKPFSRGGFL 374 (501)
T ss_pred HHHh----CCC-ccCCceEEECCEec-cccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhh-hcccccccccccc
Confidence 9999 998 44569999988776 1122445567788999998753 33555555544321 1100 000
Q ss_pred --ccccccCC---ceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhh
Q psy14062 223 --EEYEIIPG---TDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKY 292 (388)
Q Consensus 223 --~~~~~~~~---~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l 292 (388)
........ ..+.+. ......+...||||.+|++-+||-|.. +|++||+-.||-+| +.|...+
T Consensus 375 ~~~~i~~~a~~li~~fdVr--~~~~~~~a~~LSGGNqQK~IlaREl~~------~p~lLI~~qPTrGLDvgA~~~I~~~l 446 (501)
T COG3845 375 DRRAIRKFARELIEEFDVR--APSPDAPARSLSGGNQQKLILARELAR------RPDLLIAAQPTRGLDVGAIEFIHERL 446 (501)
T ss_pred CHHHHHHHHHHHHHHcCcc--CCCCCcchhhcCCcceehhhhhhhhcc------CCCEEEEcCCCccccHHHHHHHHHHH
Confidence 00000000 011111 112245678999999999999999999 99999999999999 7777788
Q ss_pred HHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 293 DEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 293 ~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
.+.++.+.. |++++.|++++...+|++.-.
T Consensus 447 ~e~r~~G~A-VLLiS~dLDEil~lsDrIaVi 476 (501)
T COG3845 447 LELRDAGKA-VLLISEDLDEILELSDRIAVI 476 (501)
T ss_pred HHHHhcCCE-EEEEehhHHHHHHhhheeeee
Confidence 888888876 999999999999999987443
No 408
>KOG0064|consensus
Probab=99.37 E-value=3.9e-14 Score=141.32 Aligned_cols=175 Identities=16% Similarity=0.161 Sum_probs=110.8
Q ss_pred ecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCC
Q psy14062 88 YAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGS 167 (388)
Q Consensus 88 y~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngS 167 (388)
+.+..++.|-.-..+..++|.|.+ |-...|+||||||||+|+|++. |+= |--.
T Consensus 484 lenIpvItP~~~vvv~~Ltf~i~~----------------------G~hLLItGPNGCGKSSLfRILg----gLW-Pvy~ 536 (728)
T KOG0064|consen 484 LENIPVITPAGDVLVPKLTFQIEP----------------------GMHLLITGPNGCGKSSLFRILG----GLW-PVYN 536 (728)
T ss_pred EecCceeccCcceeecceeEEecC----------------------CceEEEECCCCccHHHHHHHHh----ccC-cccC
Confidence 444445555555556799999999 9999999999999999999999 887 7656
Q ss_pred CcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEecc---ccCC--CCccccccCCceEE----EEEE
Q psy14062 168 GKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ---IIDK--PNEEYEIIPGTDLE----IART 238 (388)
Q Consensus 168 GKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~---~~~~--~~~~~~~~~~~~l~----~~r~ 238 (388)
|.. . ..|..+|-|+||.|..- .-+.++-.+++.. ..+. .+.+...+- ..+. +.|.
T Consensus 537 g~L-------~-------~P~~~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL-~~v~L~~i~qr~ 600 (728)
T KOG0064|consen 537 GLL-------S-------IPRPNNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQDLEAIL-DIVHLEHILQRE 600 (728)
T ss_pred Cee-------e-------cCCCcceEeccCCCccC-cCcccceeecCCcHHHHHhcCCCHHHHHHHH-HHhhHHHHHHhc
Confidence 651 1 12335589999987654 2233332333211 0011 111100000 0000 0111
Q ss_pred eeeC--CCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-HHHHhhhHHHHHHhhhHHHHHHHhHH
Q psy14062 239 AFYD--NSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-EVLYGKYDEERTEKLTRVQLVETDLK 311 (388)
Q Consensus 239 ~~~~--~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-e~i~~~l~el~~e~~~~ii~vtH~l~ 311 (388)
..|+ ..--.-||||++||..+||.+-+ .|++-+|||-|++. -++.+.+.+..+....+++-+||...
T Consensus 601 ~g~da~~dWkd~LsgGekQR~~mARm~yH------rPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrps 670 (728)
T KOG0064|consen 601 GGWDAVRDWKDVLSGGEKQRMGMARMFYH------RPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPS 670 (728)
T ss_pred cChhhhccHHhhccchHHHHHHHHHHHhc------CcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCcc
Confidence 1111 11124689999999999999999 99999999999998 77777777766654444777788654
No 409
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.35 E-value=5.3e-14 Score=138.45 Aligned_cols=168 Identities=18% Similarity=0.219 Sum_probs=98.5
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCc----ceeehhhhhhcCccchh----hhhccceeE--ecccCCCC
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGK----SNVIDSMLFVFGYRASK----IRANKLSVL--MHKSDQVG 203 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGK----s~i~da~i~vlg~~~~~----lr~~~i~~l--~q~~~~~~ 203 (388)
|.+++|+||||-||||.+++++ |.+-|| =|+ -.+..-+-..-|..... +....+..+ +|--...|
T Consensus 100 G~V~GilG~NGiGKsTalkILa----Gel~PN-LG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iP 174 (591)
T COG1245 100 GKVVGILGPNGIGKSTALKILA----GELKPN-LGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIP 174 (591)
T ss_pred CcEEEEEcCCCccHHHHHHHHh----CccccC-CCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHH
Confidence 8999999999999999999999 888777 333 23333222222221111 111111111 11000001
Q ss_pred CcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchh
Q psy14062 204 GVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIA 283 (388)
Q Consensus 204 ~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s 283 (388)
..-.-.|.-.+... +... ..+ ..++...+....++....||||+.||++||.++.. +.+++++|||++
T Consensus 175 k~~KG~v~elLk~~-de~g-~~d----evve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~r------dADvY~FDEpsS 242 (591)
T COG1245 175 KVVKGKVGELLKKV-DERG-KFD----EVVERLGLENVLDRDVSELSGGELQRVAIAAALLR------DADVYFFDEPSS 242 (591)
T ss_pred HHhcchHHHHHHhh-hhcC-cHH----HHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhc------cCCEEEEcCCcc
Confidence 00000000000000 0000 000 11222233334467789999999999999999999 999999999999
Q ss_pred hH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHH
Q psy14062 284 KM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRK 319 (388)
Q Consensus 284 ~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~ 319 (388)
-| -.++..++++.+.+. .+++|+|||..+.-.+|-
T Consensus 243 yLDi~qRl~~ar~Irel~~~~k-~ViVVEHDLavLD~lsD~ 282 (591)
T COG1245 243 YLDIRQRLNAARVIRELAEDGK-YVIVVEHDLAVLDYLSDF 282 (591)
T ss_pred cccHHHHHHHHHHHHHHhccCC-eEEEEechHHHHHHhhhe
Confidence 99 345567888877644 499999999888776663
No 410
>KOG0065|consensus
Probab=99.34 E-value=1.1e-14 Score=158.63 Aligned_cols=157 Identities=16% Similarity=0.191 Sum_probs=100.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhccc-EEEcCCCCCcceeehhhhhhcCccch-hhhhccceeEecccCCCCCcceEEEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFN-AIIGPNGSGKSNVIDSMLFVFGYRAS-KIRANKLSVLMHKSDQVGGVSRCSVA 211 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~n-gIiGpngSGKs~i~da~i~vlg~~~~-~lr~~~i~~l~q~~~~~~~~~~~eV~ 211 (388)
|-.+||+|+|||||||||++|+.+.+ |++ +|.+.|. |.... ..-++.+||+-|+.-..+.+|+.|-.
T Consensus 817 G~LTALMG~SGAGKTTLLdvLA~R~t~G~I----~Gdi~i~-------G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL 885 (1391)
T KOG0065|consen 817 GVLTALMGESGAGKTTLLDVLAGRKTGGYI----EGDILIS-------GFPKDQETFARVSGYVEQQDIHSPELTVRESL 885 (1391)
T ss_pred CceeehhcCCCCchHHHHHHHhcCcccceE----EeEEEEC-------CeeCchhhhccccceeecccccCcccchHHHH
Confidence 99999999999999999999995432 333 5775554 44332 22335589999886665666765532
Q ss_pred EEec--ccc-CCCCc-cccccCCceEEEEEEeee----CCCCeeeeCCccccHHHHHHHHHHcCCCCCCC-ceEEeccch
Q psy14062 212 IHFA--QII-DKPNE-EYEIIPGTDLEIARTAFY----DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNN-RFLILQEPI 282 (388)
Q Consensus 212 ~~~~--~~~-~~~~~-~~~~~~~~~l~~~r~~~~----~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p-~~LLlDEP~ 282 (388)
.+-+ ++. ..+.. .++-++ ..+++..+... -+.+...||..|++|+.|+--|+. +| .+|.|||||
T Consensus 886 ~fSA~LRlp~~v~~~ek~~yVe-~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA------~P~~ilFLDEPT 958 (1391)
T KOG0065|consen 886 RFSAALRLPKEVSDEEKYEYVE-EVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVA------NPSSILFLDEPT 958 (1391)
T ss_pred HHHHHHcCCCcCCHHHHHHHHH-HHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEec------CCceeEEecCCC
Confidence 2211 111 11111 111111 12222222221 244557799999999999987777 89 788899999
Q ss_pred hhH-----HHHHhhhHHHHHHhhhHHHHHHHh
Q psy14062 283 AKM-----EVLYGKYDEERTEKLTRVQLVETD 309 (388)
Q Consensus 283 s~L-----e~i~~~l~el~~e~~~~ii~vtH~ 309 (388)
++| ..|...++.+.+.+.+ |++.-|+
T Consensus 959 SGLDsqaA~~i~~~lrkla~tGqt-IlCTIHQ 989 (1391)
T KOG0065|consen 959 SGLDSQAAAIVMRFLRKLADTGQT-ILCTIHQ 989 (1391)
T ss_pred CCccHHHHHHHHHHHHHHHhcCCe-EEEEecC
Confidence 999 4566677788777765 6666665
No 411
>KOG0066|consensus
Probab=99.34 E-value=1.6e-13 Score=134.33 Aligned_cols=78 Identities=14% Similarity=0.076 Sum_probs=60.9
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
.+++...+|||-+-|+.+||||-. .|-+|.|||||..| -...-.+..+.+-...|+++|+||-..+...|..+
T Consensus 406 Q~rPt~kFSGGWRMRvSLARALfl------EPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdI 479 (807)
T KOG0066|consen 406 QERPTTKFSGGWRMRVSLARALFL------EPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDI 479 (807)
T ss_pred hcCCccccCCceeeehhHHHHHhc------CceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHH
Confidence 467788899999999999999999 99999999999998 11111233333333447999999999999999988
Q ss_pred HHHHH
Q psy14062 321 VNFLE 325 (388)
Q Consensus 321 ~~y~~ 325 (388)
+..-.
T Consensus 480 IHLD~ 484 (807)
T KOG0066|consen 480 IHLDN 484 (807)
T ss_pred hhhhh
Confidence 76543
No 412
>PRK03918 chromosome segregation protein; Provisional
Probab=99.33 E-value=4.4e-10 Score=124.00 Aligned_cols=47 Identities=36% Similarity=0.629 Sum_probs=38.7
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
|.|..|.+.||++|++.. + .|+ +.+++|+|||||||||++.+|
T Consensus 1 m~i~~l~i~nf~~~~~~~-i-~f~-----------------------------------~g~~~i~G~nG~GKStil~ai 43 (880)
T PRK03918 1 MKIEELKIKNFRSHKSSV-V-EFD-----------------------------------DGINLIIGQNGSGKSSILEAI 43 (880)
T ss_pred CeeEEEEEeCccCccCce-E-ecC-----------------------------------CCcEEEEcCCCCCHHHHHHHH
Confidence 568899999999998643 3 343 569999999999999999999
Q ss_pred hhcc
Q psy14062 155 LFRF 158 (388)
Q Consensus 155 ~~~~ 158 (388)
.|.+
T Consensus 44 ~~~l 47 (880)
T PRK03918 44 LVGL 47 (880)
T ss_pred HHHh
Confidence 9733
No 413
>KOG2355|consensus
Probab=99.31 E-value=6.5e-13 Score=118.83 Aligned_cols=176 Identities=15% Similarity=0.119 Sum_probs=104.1
Q ss_pred cccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCcc
Q psy14062 104 QISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYR 183 (388)
Q Consensus 104 ~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~ 183 (388)
|+|++++. |....++|.|||||||||++++ |=- --+.|.+.+.|..-|-...
T Consensus 32 Dfnldlp~----------------------gsRcLlVGaNGaGKtTlLKiLs----GKh-mv~~~~v~VlgrsaFhDt~- 83 (291)
T KOG2355|consen 32 DFNLDLPA----------------------GSRCLLVGANGAGKTTLLKILS----GKH-MVGGGVVQVLGRSAFHDTS- 83 (291)
T ss_pred EEeeccCC----------------------CceEEEEecCCCchhhhHHHhc----Ccc-cccCCeEEEcCcCcccccc-
Confidence 89999999 9999999999999999999888 422 1223555554443332100
Q ss_pred chhhhhccceeEecccCCCCCc-ceEEEEEE--e---ccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHH
Q psy14062 184 ASKIRANKLSVLMHKSDQVGGV-SRCSVAIH--F---AQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFK 257 (388)
Q Consensus 184 ~~~lr~~~i~~l~q~~~~~~~~-~~~eV~~~--~---~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~ 257 (388)
-.-+....|+--. ..... ...+|-+. + ..+++......++.+ ..+.+.... .......+|.||++|+
T Consensus 84 --l~~Sgdl~YLGge--W~~~~~~agevplq~D~sae~mifgV~g~dp~Rre-~LI~iLDId--l~WRmHkvSDGqrRRV 156 (291)
T KOG2355|consen 84 --LESSGDLSYLGGE--WSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERRE-KLIDILDID--LRWRMHKVSDGQRRRV 156 (291)
T ss_pred --ccccCceeEeccc--ccccccccccccccccccHHHHHhhccCCChhHhh-hhhhheecc--ceEEEeeccccchhhh
Confidence 0011112232111 00000 00011000 0 001111111111111 122232221 2345778999999999
Q ss_pred HHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 258 EVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 258 ~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
.|+.-|.. .-++|+|||-|--| .++.+.+++..++...+|+..||-.+-++.+...+
T Consensus 157 QicMGLL~------PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl 218 (291)
T KOG2355|consen 157 QICMGLLK------PFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHL 218 (291)
T ss_pred HHHHhccc------ceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhE
Confidence 99998887 66999999999888 66677777777776667999999988888886654
No 414
>PRK02224 chromosome segregation protein; Provisional
Probab=99.29 E-value=3.3e-10 Score=125.05 Aligned_cols=47 Identities=30% Similarity=0.499 Sum_probs=39.3
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
|.+..|.+.||++|++..+ +|+ +.+++|+|||||||||||.+|
T Consensus 1 M~i~~l~l~nf~~~~~~~~--~f~-----------------------------------~g~~~i~G~Ng~GKStil~ai 43 (880)
T PRK02224 1 MRFDRVRLENFKCYADADL--RLE-----------------------------------DGVTVIHGVNGSGKSSLLEAC 43 (880)
T ss_pred CeEEEEEEECcccccceEE--ecC-----------------------------------CCeEEEECCCCCCHHHHHHHH
Confidence 5688999999999986543 344 679999999999999999999
Q ss_pred hhcc
Q psy14062 155 LFRF 158 (388)
Q Consensus 155 ~~~~ 158 (388)
+|.+
T Consensus 44 ~~~l 47 (880)
T PRK02224 44 FFAL 47 (880)
T ss_pred HHHh
Confidence 9733
No 415
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.29 E-value=1.5e-10 Score=132.28 Aligned_cols=60 Identities=23% Similarity=0.501 Sum_probs=45.8
Q ss_pred EEEEEeeceEEecC----ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 77 ITKIVAFNFKSYAG----YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 77 i~~l~~~~fksy~~----~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+.+|.+.||+||+. .+.|+ |. ..+++|+|||||||||++.
T Consensus 3 ~~kl~i~g~rSf~~~~~~~~~I~-F~-----------------------------------~~~~~I~G~NGaGKTTil~ 46 (1311)
T TIGR00606 3 FLKMSILGVRSFGIEDKDKQIID-FF-----------------------------------SPLTILVGPNGAGKTTIIE 46 (1311)
T ss_pred cceeeeeceecCCCccccceeee-cc-----------------------------------cceEEEECCCCCCHHHHHH
Confidence 46788999999963 45553 43 5799999999999999999
Q ss_pred hhhhcccEEEcCCC-CCcceee
Q psy14062 153 SMLFRFNAIIGPNG-SGKSNVI 173 (388)
Q Consensus 153 ~i~~~~ngIiGpng-SGKs~i~ 173 (388)
+|+|.+.|.. |++ +|.+.|.
T Consensus 47 ai~~al~G~~-~~~~~g~~~i~ 67 (1311)
T TIGR00606 47 CLKYICTGDF-PPGTKGNTFVH 67 (1311)
T ss_pred HHHHHhcCCC-CCCCCCceEec
Confidence 9998777777 554 5654443
No 416
>PRK01156 chromosome segregation protein; Provisional
Probab=99.29 E-value=9.9e-10 Score=121.47 Aligned_cols=45 Identities=38% Similarity=0.594 Sum_probs=38.2
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
|.+..|.+.||++|++..+ .|+ .++++|+|||||||||+|.+|
T Consensus 1 M~i~~l~l~NF~s~~~~~i--~f~-----------------------------------~gi~~I~G~NGsGKSsileAI 43 (895)
T PRK01156 1 MIIKRIRLKNFLSHDDSEI--EFD-----------------------------------TGINIITGKNGAGKSSIVDAI 43 (895)
T ss_pred CeEEEEEEeCccCCCCceE--ecC-----------------------------------CCeEEEECCCCCCHHHHHHHH
Confidence 5688999999999986432 344 569999999999999999999
Q ss_pred hh
Q psy14062 155 LF 156 (388)
Q Consensus 155 ~~ 156 (388)
+|
T Consensus 44 ~~ 45 (895)
T PRK01156 44 RF 45 (895)
T ss_pred HH
Confidence 97
No 417
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.28 E-value=2.5e-12 Score=140.18 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=59.5
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPE 316 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~ 316 (388)
.+++...|||||+||+.+|++|.. ...+|.++|||||+++| ..+.+.+.++++.+. ++++++|+++.+. .
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~---~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~-TVIvi~H~~~~i~-~ 896 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSK---RSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGN-TVVVIEHNLDVIK-T 896 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhh---cCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEeCCHHHHH-h
Confidence 367788999999999999999986 00138999999999999 667778888776655 5999999999874 4
Q ss_pred HHHH
Q psy14062 317 LRKA 320 (388)
Q Consensus 317 ~d~~ 320 (388)
+|++
T Consensus 897 aD~i 900 (924)
T TIGR00630 897 ADYI 900 (924)
T ss_pred CCEE
Confidence 6644
No 418
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.27 E-value=8.6e-10 Score=115.74 Aligned_cols=48 Identities=29% Similarity=0.357 Sum_probs=39.8
Q ss_pred cEEEEEEEeeceEEecCce-eecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSYAGYV-TLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~-~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
||.|..|.+.||+||++.. .+ ++.. +++++|+|||||||||+|.
T Consensus 1 ~~~~~~l~l~nf~s~~~~~~~i-------------~f~~----------------------~g~~~i~G~NG~GKStll~ 45 (562)
T PHA02562 1 MLKFKKIRYKNILSVGNQPIEI-------------QLDK----------------------VKKTLITGKNGAGKSTMLE 45 (562)
T ss_pred CceEEEEEEEcccccCCCceEE-------------EEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 4789999999999998753 22 2223 5799999999999999999
Q ss_pred hhhh
Q psy14062 153 SMLF 156 (388)
Q Consensus 153 ~i~~ 156 (388)
+|+|
T Consensus 46 aI~~ 49 (562)
T PHA02562 46 ALTF 49 (562)
T ss_pred HHHH
Confidence 9997
No 419
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.21 E-value=7.2e-12 Score=114.33 Aligned_cols=57 Identities=9% Similarity=0.067 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHH-hhhHHHHHHhhhHHHHHHHhHHHHHHH
Q psy14062 257 KEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLY-GKYDEERTEKLTRVQLVETDLKALEPE 316 (388)
Q Consensus 257 ~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~-~~l~el~~e~~~~ii~vtH~l~~l~~~ 316 (388)
..+..+|..++. ..|+++|+|||++++ ..+. ..+..+.+.+ .+++++||+++.+...
T Consensus 92 ~~~~~iL~~~~~--~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~-~tiiivTH~~~~~~~~ 154 (199)
T cd03283 92 RRLKEIVEKAKK--GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKN-TIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHhccC--CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEcCcHHHHHhh
Confidence 456777777654 479999999999988 2333 3555655444 4589999999877543
No 420
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.21 E-value=5.1e-12 Score=117.27 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=50.5
Q ss_pred eeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccc---hhhHH---HHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHH
Q psy14062 246 YYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEP---IAKME---VLYGKYDEERTEKLTRVQLVETDLKALEPELRK 319 (388)
Q Consensus 246 ~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP---~s~Le---~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~ 319 (388)
...+|.++++++.+++++... .+|.++|+||| |++++ .....++.+.++...+++++||. .++.+.+++
T Consensus 87 ~~~lS~~~~e~~~~a~il~~~----~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~-~el~~~~~~ 161 (222)
T cd03285 87 LKGVSTFMAEMLETAAILKSA----TENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHF-HELTALADE 161 (222)
T ss_pred hcCcChHHHHHHHHHHHHHhC----CCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEech-HHHHHHhhc
Confidence 456899999999999999542 17999999999 77771 12223344443322358899995 777888886
Q ss_pred HHH
Q psy14062 320 AVN 322 (388)
Q Consensus 320 ~~~ 322 (388)
+..
T Consensus 162 ~~~ 164 (222)
T cd03285 162 VPN 164 (222)
T ss_pred CCC
Confidence 543
No 421
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.20 E-value=2.6e-11 Score=130.74 Aligned_cols=60 Identities=12% Similarity=0.115 Sum_probs=40.7
Q ss_pred CeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHH-HhhhHHHHHHhhhHHHHHHHhHHH
Q psy14062 245 SYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVL-YGKYDEERTEKLTRVQLVETDLKA 312 (388)
Q Consensus 245 ~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i-~~~l~el~~e~~~~ii~vtH~l~~ 312 (388)
...++|++++++..|.+.+ . .+.++|+|||++++ ..+ ...+..+.+.+. +++++||+.+.
T Consensus 382 ~LStfS~~m~~~~~il~~~-~------~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~-~viitTH~~eL 447 (771)
T TIGR01069 382 NLSTFSGHMKNISAILSKT-T------ENSLVLFDELGAGTDPDEGSALAISILEYLLKQNA-QVLITTHYKEL 447 (771)
T ss_pred hhhHHHHHHHHHHHHHHhc-C------CCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCC-EEEEECChHHH
Confidence 3556889999887776655 3 68999999999988 333 234555544443 47777777543
No 422
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.17 E-value=2.8e-12 Score=125.12 Aligned_cols=166 Identities=16% Similarity=0.199 Sum_probs=101.8
Q ss_pred ccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEc---CCCCCcceeehhhh
Q psy14062 101 EVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIG---PNGSGKSNVIDSML 177 (388)
Q Consensus 101 ~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiG---pngSGKs~i~da~i 177 (388)
+++||||+|.+ |++++|+|+|||||||+|++|....-+..+ .|+||++.+-...+
T Consensus 398 vlr~vNL~ikp----------------------GdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~ 455 (593)
T COG2401 398 VLRNLNLEIKP----------------------GDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV 455 (593)
T ss_pred eeeceeeEecC----------------------CCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch
Confidence 46799999999 999999999999999999999844322221 46788855422111
Q ss_pred hhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCc---cccccCCceEEEEEEeeeCCCCeeeeCCccc
Q psy14062 178 FVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNE---EYEIIPGTDLEIARTAFYDNSSYYTLNGKKV 254 (388)
Q Consensus 178 ~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~---~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~ 254 (388)
+. +++..-. |..+ ++.+ ...+.....+ ..+.+. ..-+... .+-..++..||-||+
T Consensus 456 -------~a-------~iPge~E--p~f~--~~ti-lehl~s~tGD~~~AveILn--raGlsDA-vlyRr~f~ELStGQK 513 (593)
T COG2401 456 -------SA-------LIPGEYE--PEFG--EVTI-LEHLRSKTGDLNAAVEILN--RAGLSDA-VLYRRKFSELSTGQK 513 (593)
T ss_pred -------hh-------ccCcccc--cccC--chhH-HHHHhhccCchhHHHHHHH--hhccchh-hhhhccHhhcCcchH
Confidence 11 1111100 1111 1111 0111111111 001000 0001111 112356778999999
Q ss_pred cHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHH
Q psy14062 255 HFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPE 316 (388)
Q Consensus 255 qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~ 316 (388)
-|..||.+++. .|.+++.||-.|.| -.++..+.++.++...|++++||+-+.....
T Consensus 514 eR~KLAkllae------rpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL 574 (593)
T COG2401 514 ERAKLAKLLAE------RPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNAL 574 (593)
T ss_pred HHHHHHHHHhc------CCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhcc
Confidence 99999999999 99999999988888 4566677777777666789999987665443
No 423
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.14 E-value=7.9e-11 Score=123.28 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=55.3
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH--HH---HHhhhHHHHHHhhhHHHHHHHhHHHHH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM--EV---LYGKYDEERTEKLTRVQLVETDLKALE 314 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L--e~---i~~~l~el~~e~~~~ii~vtH~l~~l~ 314 (388)
.+++..+||||+.||+.+|.-|..-.- ...++||||||.+| ++ ++..+.++...+.+ |++++|+|+.++
T Consensus 816 LGQpatTLSGGEaQRvKLA~EL~k~~t---g~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnT-ViVIEHNLdVIk 889 (935)
T COG0178 816 LGQPATTLSGGEAQRVKLAKELSKRST---GKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNT-VIVIEHNLDVIK 889 (935)
T ss_pred cCCccccccchHHHHHHHHHHHhhccC---CCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecccceEe
Confidence 489999999999999999999988221 34799999999999 44 45566666777664 999999987654
No 424
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.14 E-value=7.1e-12 Score=114.78 Aligned_cols=64 Identities=6% Similarity=-0.059 Sum_probs=42.9
Q ss_pred CeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH--HH----HHhhhHHHHHHhhhHHHHHHHhHHHHHHH
Q psy14062 245 SYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM--EV----LYGKYDEERTEKLTRVQLVETDLKALEPE 316 (388)
Q Consensus 245 ~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L--e~----i~~~l~el~~e~~~~ii~vtH~l~~l~~~ 316 (388)
....+|+++++...+.. ++. .|.++|+|||++++ .+ ....+..+.+.+. +++++||+.+.+...
T Consensus 88 ~~S~fs~e~~~~~~il~-~~~------~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~-~~i~~TH~~~l~~~~ 157 (204)
T cd03282 88 NLSTFASEMSETAYILD-YAD------GDSLVLIDELGRGTSSADGFAISLAILECLIKKES-TVFFATHFRDIAAIL 157 (204)
T ss_pred hhhHHHHHHHHHHHHHH-hcC------CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCC-EEEEECChHHHHHHh
Confidence 34567888887644433 444 78999999998776 11 2335555555544 589999998877654
No 425
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.13 E-value=8.1e-12 Score=114.11 Aligned_cols=59 Identities=10% Similarity=0.058 Sum_probs=37.8
Q ss_pred eeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHh-hhHHHHHHhhhHHHHHHHhHHHHH
Q psy14062 248 TLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYG-KYDEERTEKLTRVQLVETDLKALE 314 (388)
Q Consensus 248 ~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~-~l~el~~e~~~~ii~vtH~l~~l~ 314 (388)
.++.++++...+. .+.. +|+++|+|||++++ ..+.. ++..+++.+. +++++||+.+.+.
T Consensus 91 ~~~~e~~~l~~i~-~~~~------~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~-~vi~~tH~~~~~~ 155 (202)
T cd03243 91 TFMAELLELKEIL-SLAT------PRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGC-RTLFATHFHELAD 155 (202)
T ss_pred eHHHHHHHHHHHH-Hhcc------CCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCC-eEEEECChHHHHH
Confidence 4456666544443 3334 79999999999988 22322 3444444444 5899999976655
No 426
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.12 E-value=3.2e-10 Score=122.66 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=44.6
Q ss_pred CCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHh-hhHHHHHHhhhHHHHHHHhHHHHH
Q psy14062 244 SSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYG-KYDEERTEKLTRVQLVETDLKALE 314 (388)
Q Consensus 244 ~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~-~l~el~~e~~~~ii~vtH~l~~l~ 314 (388)
....++|++++++..|++++ . .|.++|+|||++++ ..+.. .+..+.+.+. +++++||+.+...
T Consensus 386 ~~lStfS~~m~~~~~Il~~~-~------~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~-~vIitTH~~el~~ 454 (782)
T PRK00409 386 QSLSTFSGHMTNIVRILEKA-D------KNSLVLFDELGAGTDPDEGAALAISILEYLRKRGA-KIIATTHYKELKA 454 (782)
T ss_pred hchhHHHHHHHHHHHHHHhC-C------cCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCC-EEEEECChHHHHH
Confidence 34567899999999998877 4 68899999999988 23332 4444444443 4777888765543
No 427
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.10 E-value=5.2e-09 Score=117.38 Aligned_cols=52 Identities=25% Similarity=0.464 Sum_probs=41.7
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
|.+..|++.||+||++...+ +|+ . ++++++|+|||||||||+|.+|
T Consensus 1 M~~~~L~l~nf~s~~~~~~i-dF~------------~---------------------~~gl~~I~G~nGaGKSTildAI 46 (1042)
T TIGR00618 1 MKPLRLTLKNFGSYKGTHTI-DFT------------A---------------------LGPIFLICGKTGAGKTTLLDAI 46 (1042)
T ss_pred CeeeEEEEeCeeccCCCcee-eec------------C---------------------CCCeEEEECCCCCCHHHHHHHH
Confidence 56789999999999987655 343 1 0279999999999999999999
Q ss_pred hhcccE
Q psy14062 155 LFRFNA 160 (388)
Q Consensus 155 ~~~~ng 160 (388)
+|.+.|
T Consensus 47 ~~aL~G 52 (1042)
T TIGR00618 47 TYALYG 52 (1042)
T ss_pred HHHhcC
Confidence 984444
No 428
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.10 E-value=4e-11 Score=114.51 Aligned_cols=71 Identities=13% Similarity=0.009 Sum_probs=45.3
Q ss_pred CeeeeCCccccHHHHHHHHHHcCC---CCCCCceEEeccchhhH-HHH-HhhhHHHHHHhhhHHHHHHHhHHHHHHHH
Q psy14062 245 SYYTLNGKKVHFKEVAKVLRDHGV---DLLNNRFLILQEPIAKM-EVL-YGKYDEERTEKLTRVQLVETDLKALEPEL 317 (388)
Q Consensus 245 ~~~~LSgGq~qr~~Ia~aL~~~Gi---~~~~p~~LLlDEP~s~L-e~i-~~~l~el~~e~~~~ii~vtH~l~~l~~~~ 317 (388)
....+|+||++++.++++|+...+ ....|+++|+|||+++| ... ..++..+++.. .+++++|+...+...+
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~--q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV--QTFVTTTDLADFDALW 255 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC--CEEEEeCCchhccchh
Confidence 355679999999999999862111 01278999999999999 222 22222222222 3667777776666554
No 429
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=99.09 E-value=1.2e-08 Score=108.98 Aligned_cols=55 Identities=29% Similarity=0.528 Sum_probs=42.8
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCC-cEEEEEcCCCCChhhHHhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYK-RFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~iiGpnGsGKSTLl~~ 153 (388)
|.|..|.+.||.+|.+.. .++|.+.. + .+++|+||||||||||+++
T Consensus 1 M~i~~l~l~nf~~~~~~~-----------~~~~~~~~----------------------~~~~~~i~G~Ng~GKttll~a 47 (650)
T TIGR03185 1 MIILQLTLENFGPYRGRQ-----------TFDLSPSS----------------------PKPIILIGGLNGAGKTTLLDA 47 (650)
T ss_pred CcccEEEEeceEEEcCCc-----------eeeeecCC----------------------CCeEEEEECCCCCCHHHHHHH
Confidence 567889999999998754 34455554 4 4999999999999999999
Q ss_pred hhhcccEEEcCC
Q psy14062 154 MLFRFNAIIGPN 165 (388)
Q Consensus 154 i~~~~ngIiGpn 165 (388)
|.| ++.|..
T Consensus 48 i~~---~LyG~~ 56 (650)
T TIGR03185 48 IQL---ALYGKR 56 (650)
T ss_pred HHH---HhcCcc
Confidence 998 555543
No 430
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.02 E-value=1.8e-08 Score=111.46 Aligned_cols=51 Identities=33% Similarity=0.616 Sum_probs=39.8
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
|.+..|.+.||.||.+..+-..|. ..+++|+|||||||||+|.+|
T Consensus 1 M~i~~L~L~Nf~S~~~~~~~~~f~-----------------------------------~gi~lI~G~nGsGKSSIldAI 45 (908)
T COG0419 1 MKILRLRLKNFRSFKDIDIEKLFD-----------------------------------SGIFLIVGPNGAGKSSILDAI 45 (908)
T ss_pred CCCeeeehcccccccccceeecCC-----------------------------------CCeEEEECCCCCcHHHHHHHH
Confidence 456789999999998433321122 789999999999999999999
Q ss_pred hhcccEEEc
Q psy14062 155 LFRFNAIIG 163 (388)
Q Consensus 155 ~~~~ngIiG 163 (388)
+| ++.|
T Consensus 46 ~~---ALyG 51 (908)
T COG0419 46 TF---ALYG 51 (908)
T ss_pred HH---HHcC
Confidence 98 5554
No 431
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.00 E-value=9.9e-11 Score=133.69 Aligned_cols=73 Identities=14% Similarity=0.061 Sum_probs=59.8
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPE 316 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~ 316 (388)
.+++..+||||+.||+.+|..|.. ....+.++||||||.+| +.++..++++.+.+.+ |++++||++.++.
T Consensus 1693 LGq~~~tLSGGE~qRikLa~~l~~---~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~t-vivieH~~~~i~~- 1767 (1809)
T PRK00635 1693 LGQNLSSLSLSEKIAIKIAKFLYL---PPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHS-VIYIDHDPALLKQ- 1767 (1809)
T ss_pred CCCcCCccCchHHHHHHHHHHHhc---CCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCe-EEEEeCCHHHHHh-
Confidence 488999999999999999999976 11136899999999999 6667777778877775 9999999998876
Q ss_pred HHH
Q psy14062 317 LRK 319 (388)
Q Consensus 317 ~d~ 319 (388)
||.
T Consensus 1768 aD~ 1770 (1809)
T PRK00635 1768 ADY 1770 (1809)
T ss_pred CCE
Confidence 543
No 432
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.96 E-value=4.9e-08 Score=109.36 Aligned_cols=53 Identities=26% Similarity=0.422 Sum_probs=42.6
Q ss_pred EEEEEEEeeceEEecCceeecCCCCccccccccc---CCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMM---PPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~---i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
|.+..|.+.||.||.+... |+|+ +.. +++++|+|||||||||+|
T Consensus 1 Mk~~~l~~~nf~s~~~~~~-----------idf~~~~l~~----------------------~~l~~I~G~tGaGKStil 47 (1047)
T PRK10246 1 MKILSLRLKNLNSLKGEWK-----------IDFTAEPFAS----------------------NGLFAITGPTGAGKTTLL 47 (1047)
T ss_pred CcceEEEeecceeEcCCce-----------EEEeeccCCC----------------------CCEEEEECCCCCCHHHHH
Confidence 4577899999999986653 4465 334 789999999999999999
Q ss_pred hhhhhcccEEEc
Q psy14062 152 DSMLFRFNAIIG 163 (388)
Q Consensus 152 ~~i~~~~ngIiG 163 (388)
++|+| ++.|
T Consensus 48 dai~~---aLyg 56 (1047)
T PRK10246 48 DAICL---ALYH 56 (1047)
T ss_pred HHHHH---HhcC
Confidence 99997 4554
No 433
>PRK10869 recombination and repair protein; Provisional
Probab=98.94 E-value=1.1e-07 Score=99.57 Aligned_cols=118 Identities=22% Similarity=0.366 Sum_probs=71.0
Q ss_pred EEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 76 IITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 76 ~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|+..|.+.||..|....+ +|+ ..+++|+||||||||+++.+|.
T Consensus 1 ML~~L~I~nf~~i~~~~i--~f~-----------------------------------~glnvitGetGaGKS~ildAi~ 43 (553)
T PRK10869 1 MLAQLTISNFAIVRELEI--DFQ-----------------------------------SGMTVITGETGAGKSIAIDALG 43 (553)
T ss_pred CccEEEEcccccceeeEE--ecC-----------------------------------CCcEEEECCCCCChHHHHHHHH
Confidence 567899999988854333 454 6899999999999999999999
Q ss_pred hcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCC-----ccccccCC
Q psy14062 156 FRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPN-----EEYEIIPG 230 (388)
Q Consensus 156 ~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~-----~~~~~~~~ 230 (388)
.+.|...+.. + +| .+...+.|...|.. .+... ........
T Consensus 44 ----~llG~r~~~~--~--------------ir--------------~g~~~a~Ve~~F~~-~~~~~~~~~l~~~~~~~~ 88 (553)
T PRK10869 44 ----LCLGGRAEAS--M--------------VR--------------PGATRADLCARFSL-KDTPAALRWLEDNQLEDG 88 (553)
T ss_pred ----HHhCCCcccc--c--------------cc--------------CCCCcEEEEEEEec-CCChHHHHHHHhcCCCCC
Confidence 4444211100 0 01 11223344444421 00000 00000012
Q ss_pred ceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHH
Q psy14062 231 TDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRD 265 (388)
Q Consensus 231 ~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~ 265 (388)
..+.+.|.....+++.+.+||..+....+..+...
T Consensus 89 ~~~~i~R~i~~~g~s~~~INg~~v~~~~l~~l~~~ 123 (553)
T PRK10869 89 NECLLRRVISSDGRSRGFINGTPVPLSQLRELGQL 123 (553)
T ss_pred CeEEEEEEEecCCcceEEECCeeccHHHHHHHHHh
Confidence 35677777777788999999999888777666544
No 434
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.92 E-value=6.5e-08 Score=101.69 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=27.0
Q ss_pred eEEEEEEeeeCCCCeeeeCCccccHHHHHHHHH
Q psy14062 232 DLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLR 264 (388)
Q Consensus 232 ~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~ 264 (388)
.+.+.|.....+++.|.+||..+....+..+..
T Consensus 94 ~~ii~R~i~~~grs~~~iNg~~v~~~~l~~l~~ 126 (563)
T TIGR00634 94 EVILRRSISRDGRSRAYLNGKPVSASSLLEFTS 126 (563)
T ss_pred eEEEEEEEcCCCceEEEECCEEccHHHHHHHhc
Confidence 566778777788999999999999888777654
No 435
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.90 E-value=2.4e-10 Score=103.01 Aligned_cols=69 Identities=10% Similarity=0.012 Sum_probs=43.5
Q ss_pred CCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHH-hhhHHHHHHhhhHHHHHHHhHHHHHHH
Q psy14062 243 NSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLY-GKYDEERTEKLTRVQLVETDLKALEPE 316 (388)
Q Consensus 243 ~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~-~~l~el~~e~~~~ii~vtH~l~~l~~~ 316 (388)
......+|+++++ +++++... .+|.++|+|||++++ ..+. ..++.+.+....+++++||+++ +.+.
T Consensus 56 ~~~~s~fs~~~~~---l~~~l~~~----~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~-l~~~ 127 (185)
T smart00534 56 AQGLSTFMVEMKE---TANILKNA----TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE-LTKL 127 (185)
T ss_pred hccccHHHHHHHH---HHHHHHhC----CCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH-HHHH
Confidence 3445677777776 44444431 268999999999988 2232 3445554432235899999984 6666
Q ss_pred HHH
Q psy14062 317 LRK 319 (388)
Q Consensus 317 ~d~ 319 (388)
++.
T Consensus 128 ~~~ 130 (185)
T smart00534 128 ADE 130 (185)
T ss_pred hhc
Confidence 653
No 436
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.88 E-value=1.3e-09 Score=89.09 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=46.0
Q ss_pred cccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhh
Q psy14062 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFV 179 (388)
Q Consensus 100 ~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~v 179 (388)
.+|+++||++.+ |++++|+||||||||||++++. +|++.+.+.++..
T Consensus 3 ~aL~~vsl~i~~----------------------ge~v~I~GpSGsGKSTLl~~l~-----------~G~i~~~g~di~~ 49 (107)
T cd00820 3 TSLHGVLVDVYG----------------------KVGVLITGDSGIGKTELALELI-----------KRKHRLVGDDNVE 49 (107)
T ss_pred eEEEeeEEEEcC----------------------CEEEEEEcCCCCCHHHHHHHhh-----------CCeEEEeeEeHHH
Confidence 356799999999 9999999999999999999764 6777777766544
Q ss_pred cCccchhhhhccceeEecc
Q psy14062 180 FGYRASKIRANKLSVLMHK 198 (388)
Q Consensus 180 lg~~~~~lr~~~i~~l~q~ 198 (388)
+... .+.+.+++++|.
T Consensus 50 ~~~~---~~~~~~~~~~q~ 65 (107)
T cd00820 50 IRED---SKDELIGRNPEL 65 (107)
T ss_pred hhhh---hcCCEEEEechh
Confidence 3221 122335566665
No 437
>PRK00064 recF recombination protein F; Reviewed
Probab=98.85 E-value=1.2e-07 Score=94.27 Aligned_cols=44 Identities=23% Similarity=0.571 Sum_probs=36.6
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
|+|..|.+.||++|.... +.+. ..+++|+|||||||||+|.+|
T Consensus 1 M~i~~l~i~nfr~~~~~~--------------l~~~-----------------------~~~~~i~G~NgsGKT~lleai 43 (361)
T PRK00064 1 MYLTRLSLTDFRNYEELD--------------LELS-----------------------PGVNVLVGENGQGKTNLLEAI 43 (361)
T ss_pred CEEEEEEEeCCCcccceE--------------EEec-----------------------CCeEEEECCCCCCHHHHHHHH
Confidence 578999999999997432 3333 469999999999999999999
Q ss_pred h
Q psy14062 155 L 155 (388)
Q Consensus 155 ~ 155 (388)
.
T Consensus 44 ~ 44 (361)
T PRK00064 44 Y 44 (361)
T ss_pred H
Confidence 9
No 438
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.83 E-value=2.1e-09 Score=99.41 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCCCCCCceEEeccc---hhhHH--HH-HhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 256 FKEVAKVLRDHGVDLLNNRFLILQEP---IAKME--VL-YGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 256 r~~Ia~aL~~~Gi~~~~p~~LLlDEP---~s~Le--~i-~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
+..++.++... .+|.++|+||| |+.++ .+ ...+..+.+....+++++||+. ++.+.++++
T Consensus 97 ~~~l~~~l~~~----~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~-~l~~l~~~~ 162 (216)
T cd03284 97 MVETANILNNA----TERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYH-ELTELEGKL 162 (216)
T ss_pred HHHHHHHHHhC----CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcH-HHHHHhhcC
Confidence 34577777642 27899999999 87772 22 3344444444133588999996 455566554
No 439
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.78 E-value=7.7e-10 Score=97.95 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=48.7
Q ss_pred eCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHH
Q psy14062 241 YDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKAL 313 (388)
Q Consensus 241 ~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l 313 (388)
..+.+....|-|+--..-+.+.+.. .-++|||||-++| -++...+.++.+.+. .++++||..=.+
T Consensus 122 ~~~~sLh~~SHGEsf~~i~~~rf~~-------~GiYiLDEPEa~LSp~RQlella~l~~la~sGa-Q~IiATHSPiLl 191 (233)
T COG3910 122 YGGRSLHHMSHGESFLAIFHNRFNG-------QGIYILDEPEAALSPSRQLELLAILRDLADSGA-QIIIATHSPILL 191 (233)
T ss_pred cCCcchhhhccchHHHHHHHHHhcc-------CceEEecCccccCCHHHHHHHHHHHHHHHhcCC-eEEEEecChhhe
Confidence 3455667778898877777777765 5689999999998 566778888888774 589999975443
No 440
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.77 E-value=3.7e-06 Score=96.50 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=59.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14062 303 VQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKT 382 (388)
Q Consensus 303 ii~vtH~l~~l~~~~d~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~ 382 (388)
+--+...+..+..+......|.+........+.......+..+..++..++.+++..+.++.++++++..++.+++.+++
T Consensus 239 le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ 318 (1353)
T TIGR02680 239 LERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRT 318 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566667777777777777666666666666666777777777777777777777777777777777777777766
Q ss_pred Hhhhh
Q psy14062 383 ELKTV 387 (388)
Q Consensus 383 ~~~~~ 387 (388)
++..+
T Consensus 319 ~~~~l 323 (1353)
T TIGR02680 319 RLEAL 323 (1353)
T ss_pred HHHHh
Confidence 66543
No 441
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.76 E-value=2.3e-09 Score=108.08 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=48.1
Q ss_pred ccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCC-cceeehhhhhh
Q psy14062 101 EVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSG-KSNVIDSMLFV 179 (388)
Q Consensus 101 ~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSG-Ks~i~da~i~v 179 (388)
+|++|||++.+ |++++|+|||||||||||+ + ++. .+.+| ++.+.|..++.
T Consensus 21 vL~~Vsl~i~~----------------------GEiv~L~G~SGsGKSTLLr--~----~l~-~~~sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 21 ILVKFNKELPS----------------------SSLLFLCGSSGDGKSEILA--E----NKR-KFSEGYEFFLDATHSFS 71 (504)
T ss_pred HHhCCceeecC----------------------CCEEEEECCCCCCHHHHHh--c----CCC-CCCCCCEEEECCEECCC
Confidence 46799999999 9999999999999999999 4 555 44566 68887766653
Q ss_pred cCccchhhhhccceeEecccC
Q psy14062 180 FGYRASKIRANKLSVLMHKSD 200 (388)
Q Consensus 180 lg~~~~~lr~~~i~~l~q~~~ 200 (388)
.... .+. .+.+|||..+
T Consensus 72 ~~~~--ai~--~LR~VFQ~fn 88 (504)
T TIGR03238 72 PNKN--AME--TLDEIFDGFN 88 (504)
T ss_pred CCHH--HHH--HHHHHHHhhh
Confidence 3222 111 1227888754
No 442
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.74 E-value=3.3e-06 Score=96.64 Aligned_cols=81 Identities=20% Similarity=0.252 Sum_probs=47.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14062 305 LVETDLKALEPELRKAVNFLELENCVQR--KHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKT 382 (388)
Q Consensus 305 ~vtH~l~~l~~~~d~~~~y~~~~~~~~~--~~~~~~~~~l~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~ 382 (388)
.+...+..+++.++.+.+|+++..+... .+...+...+.++..++++.+..+++++.++.+++.++..+++++..+++
T Consensus 318 ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqe 397 (1486)
T PRK04863 318 ELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKS 397 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677788888888888887766332 23333455555555555555555555555555555555555555555544
Q ss_pred Hhh
Q psy14062 383 ELK 385 (388)
Q Consensus 383 ~~~ 385 (388)
++.
T Consensus 398 qLa 400 (1486)
T PRK04863 398 QLA 400 (1486)
T ss_pred HHH
Confidence 443
No 443
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.74 E-value=6.1e-09 Score=99.27 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=33.5
Q ss_pred cEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhh
Q psy14062 135 RFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLF 178 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~ 178 (388)
.-++|+||||||||||+++++ +++ ++++|++.+.|..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~----~~~-~~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLA----RIL-STGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHh----Ccc-CCCCceEEECCEEee
Confidence 467999999999999999999 999 778999877766543
No 444
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.73 E-value=6.9e-09 Score=95.70 Aligned_cols=59 Identities=14% Similarity=0.036 Sum_probs=40.8
Q ss_pred cccHHHHHHHHHHcCCCCCCCceEEeccchhhH--H---HH-HhhhHHHHHHh--hhHHHHHHHhHHHHHHHH
Q psy14062 253 KVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM--E---VL-YGKYDEERTEK--LTRVQLVETDLKALEPEL 317 (388)
Q Consensus 253 q~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L--e---~i-~~~l~el~~e~--~~~ii~vtH~l~~l~~~~ 317 (388)
+.+++.++..++. .+.++|+|||++++ . .+ ...++.+.+.+ ..+++++||+.+.++...
T Consensus 95 el~~l~~~l~~~~------~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 95 DLYQVSKALRLAT------RRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHhCC------CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 4566666666666 89999999999988 1 22 34566655432 224889999998877653
No 445
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.72 E-value=1.2e-08 Score=74.85 Aligned_cols=23 Identities=43% Similarity=0.722 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
|.++.|.|||||||||+|.+|.+
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999995
No 446
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.70 E-value=1e-08 Score=95.03 Aligned_cols=31 Identities=29% Similarity=0.392 Sum_probs=29.3
Q ss_pred ccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 103 EQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 103 ~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.|++|.+.. |++++|+||||+||||++++++
T Consensus 22 n~i~~~~~~----------------------g~~~~itG~N~~GKStll~~i~ 52 (222)
T cd03287 22 NDIHLSAEG----------------------GYCQIITGPNMGGKSSYIRQVA 52 (222)
T ss_pred EeEEEEecC----------------------CcEEEEECCCCCCHHHHHHHHH
Confidence 489999999 9999999999999999999998
No 447
>KOG0065|consensus
Probab=98.64 E-value=1.5e-08 Score=111.60 Aligned_cols=158 Identities=12% Similarity=0.130 Sum_probs=101.1
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|+|+|.-+++ |+.+.++||.||||||||++++...+.... ++|++..+|.
T Consensus 131 l~~~sg~~~p----------------------g~m~lvLG~pgsG~ttllkal~g~~~~~~~--~~~~isy~G~------ 180 (1391)
T KOG0065|consen 131 LKDISGIIKP----------------------GEMTLVLGPPGSGKTTLLKALAGKLDNFLK--SSGEITYNGH------ 180 (1391)
T ss_pred ecCcceeEcC----------------------CceEEEecCCCCchHHHHHHHhCCCccccc--CCCceeECCC------
Confidence 5588888888 999999999999999999999943333332 2456555543
Q ss_pred ccchhhh-hccceeEecccCCCCCcceEEEEEEeccccCCC-------Cccccc-cCCceEEEEEE-----eeeCCCCee
Q psy14062 182 YRASKIR-ANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKP-------NEEYEI-IPGTDLEIART-----AFYDNSSYY 247 (388)
Q Consensus 182 ~~~~~lr-~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~-------~~~~~~-~~~~~l~~~r~-----~~~~~~~~~ 247 (388)
+..... .+.++|..|....+|.+|+.+-.-+..++.... ..++.. .....+.+.++ ....+....
T Consensus 181 -~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~R 259 (1391)
T KOG0065|consen 181 -DLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVR 259 (1391)
T ss_pred -cccccccCceEEeccccccccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccc
Confidence 322222 345788888877778888776543322322211 111100 00001111121 123456677
Q ss_pred eeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHH
Q psy14062 248 TLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEER 296 (388)
Q Consensus 248 ~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~ 296 (388)
.+||||++|+.++.+++. .++++.+||++.+| -+++..++.+.
T Consensus 260 GvSGGerKRvsi~E~~v~------~~~~~~~De~t~GLDSsTal~iik~lr~~a 307 (1391)
T KOG0065|consen 260 GVSGGERKRVSIGEMLVG------PASILFWDEITRGLDSSTAFQIIKALRQLA 307 (1391)
T ss_pred cccCcccceeeeeeeeec------CcceeeeecccccccHHHHHHHHHHHHHHH
Confidence 899999999999999999 99999999999999 34444444443
No 448
>PRK14079 recF recombination protein F; Provisional
Probab=98.60 E-value=5.9e-06 Score=81.88 Aligned_cols=45 Identities=20% Similarity=0.497 Sum_probs=37.5
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
|.|..|.+.||++|.+... .|+ ..+++|+|||||||||+|.+|
T Consensus 1 M~i~~l~l~nfRn~~~~~l--~f~-----------------------------------~g~nvi~G~NGsGKT~lLeAI 43 (349)
T PRK14079 1 MRLLSLRQLNYRNLAPPTL--AFP-----------------------------------PGVTAVVGENAAGKTNLLEAI 43 (349)
T ss_pred CEEEEEEEeccCCcccceE--EeC-----------------------------------CCeEEEECCCCCCHHHHHHHH
Confidence 5688999999999975432 333 579999999999999999999
Q ss_pred hh
Q psy14062 155 LF 156 (388)
Q Consensus 155 ~~ 156 (388)
.+
T Consensus 44 ~~ 45 (349)
T PRK14079 44 YL 45 (349)
T ss_pred HH
Confidence 83
No 449
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.59 E-value=1.5e-06 Score=98.65 Aligned_cols=12 Identities=17% Similarity=0.393 Sum_probs=6.3
Q ss_pred cceeEecccCCC
Q psy14062 191 KLSVLMHKSDQV 202 (388)
Q Consensus 191 ~i~~l~q~~~~~ 202 (388)
.|.++|.++..+
T Consensus 79 ~V~l~fdN~d~~ 90 (1163)
T COG1196 79 EVELTFDNSDNT 90 (1163)
T ss_pred EEEEEEeCCCCc
Confidence 355666655533
No 450
>KOG0063|consensus
Probab=98.53 E-value=7.3e-09 Score=101.89 Aligned_cols=159 Identities=16% Similarity=0.164 Sum_probs=90.5
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIH 213 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~ 213 (388)
-++.+.+|.||.|||||+++++ |.+.|...|.+-.. .++|=+|...+...-+ |...
T Consensus 367 SeiivmlgEngtgkTTfi~mla----g~~~pd~~~e~p~l-----------------nVSykpqkispK~~~t---vR~l 422 (592)
T KOG0063|consen 367 SEIIVMLGENGTGKTTFIRMLA----GRLKPDEGGEIPVL-----------------NVSYKPQKISPKREGT---VRQL 422 (592)
T ss_pred ceeEEEEccCCcchhHHHHHHh----cCCCCCccCccccc-----------------ceeccccccCccccch---HHHH
Confidence 3567999999999999999999 87745444442221 1333333322111000 1100
Q ss_pred e-ccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH---HHH-
Q psy14062 214 F-AQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM---EVL- 288 (388)
Q Consensus 214 ~-~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L---e~i- 288 (388)
+ ..+.+.--+ .....+...-.......++.+..||||+.||++++.+|-. ..++++.|||.+-| .++
T Consensus 423 l~~kIr~ay~~--pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGK------pAdvYliDEpsAylDSeQRi~ 494 (592)
T KOG0063|consen 423 LHTKIRDAYMH--PQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGK------PADVYLIDEPSAYLDSEQRII 494 (592)
T ss_pred HHHHhHhhhcC--HHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCC------CCceEEecCchhhcChHHHHH
Confidence 0 000000000 0000001111112233467788999999999999988877 78999999999988 222
Q ss_pred Hh-hhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHHH
Q psy14062 289 YG-KYDEERTEKLTRVQLVETDLKALEPELRKAVNFL 324 (388)
Q Consensus 289 ~~-~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y~ 324 (388)
+. .+++..-....+-.+|+||+-.+--.+|++.-|.
T Consensus 495 AskvikRfilhakktafvVEhdfImaTYladrvivf~ 531 (592)
T KOG0063|consen 495 ASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFE 531 (592)
T ss_pred HHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEe
Confidence 11 3333322223357789999888777888876653
No 451
>KOG0962|consensus
Probab=98.52 E-value=1.7e-06 Score=95.38 Aligned_cols=39 Identities=28% Similarity=0.601 Sum_probs=30.9
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCccee
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNV 172 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i 172 (388)
...+.|+|||||||||++.|+-....|...||.-|.+.|
T Consensus 27 sPlTLIvG~NG~GKTTiIEcLKyatTG~lPpnsk~~~Fi 65 (1294)
T KOG0962|consen 27 SPLTLIVGANGTGKTTIIECLKYATTGELPPNSKGGSFI 65 (1294)
T ss_pred CCeeeEecCCCCCchhHHHHHHHHhcCcCCCCCcCCCCC
Confidence 469999999999999999999877778884554564333
No 452
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.46 E-value=1.6e-07 Score=86.86 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhh-hHHHHHHhhhHHHHHHHhHHHHHHHH
Q psy14062 255 HFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGK-YDEERTEKLTRVQLVETDLKALEPEL 317 (388)
Q Consensus 255 qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~-l~el~~e~~~~ii~vtH~l~~l~~~~ 317 (388)
-...++.+|... ..|.++|+|||.++. ..+... +..+.+....+++++||+++.+....
T Consensus 96 e~~~~~~il~~~----~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 96 ELSETANILRHA----TPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHHHHHHHHhC----CCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 344555666552 268999999998777 333333 45555431335889999998877654
No 453
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.43 E-value=8.2e-08 Score=86.32 Aligned_cols=25 Identities=40% Similarity=0.845 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRF 158 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ 158 (388)
..+++|+|||||||||++.+|.+.+
T Consensus 19 ~g~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999999643
No 454
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.39 E-value=4.9e-07 Score=83.07 Aligned_cols=37 Identities=11% Similarity=0.206 Sum_probs=30.1
Q ss_pred cccHHHHHHHHHHcCCCCCCCceEEeccch-----hhH-----HHHHhhhHHH
Q psy14062 253 KVHFKEVAKVLRDHGVDLLNNRFLILQEPI-----AKM-----EVLYGKYDEE 295 (388)
Q Consensus 253 q~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~-----s~L-----e~i~~~l~el 295 (388)
+.++..||+++.. +|+++++|||+ ++| +.+.+.+.++
T Consensus 157 ~~~f~~ia~~l~~------~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 157 EKPFLWLARRLTN------DPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred HHHHHHHHHHHhh------cccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 6677899999999 99999999999 998 5555555544
No 455
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.38 E-value=2.8e-08 Score=109.11 Aligned_cols=81 Identities=17% Similarity=0.161 Sum_probs=67.1
Q ss_pred EEEEeee-CCCCeeeeCCccccHHHHHHHHHHcCCCCCCC--ceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHH
Q psy14062 235 IARTAFY-DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNN--RFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLV 306 (388)
Q Consensus 235 ~~r~~~~-~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p--~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~v 306 (388)
..++.+. .+++...|||||+||+.||++|.. +| .++|||||+++| +.+...++++++.+. +|++|
T Consensus 475 ~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~------~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~-TVIvV 547 (943)
T PRK00349 475 DVGLDYLTLSRSAGTLSGGEAQRIRLATQIGS------GLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGN-TLIVV 547 (943)
T ss_pred ccccCCCCCCCchhhCCHHHHHHHHHHHHHhh------CCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCC-EEEEE
Confidence 3344433 478899999999999999999998 76 899999999999 778888888877665 59999
Q ss_pred HHhHHHHHHHHHHHHHH
Q psy14062 307 ETDLKALEPELRKAVNF 323 (388)
Q Consensus 307 tH~l~~l~~~~d~~~~y 323 (388)
+|+++.+. .+|++...
T Consensus 548 eH~~~~i~-~aD~vi~L 563 (943)
T PRK00349 548 EHDEDTIR-AADYIVDI 563 (943)
T ss_pred eCCHHHHH-hCCEEEEe
Confidence 99999886 58876554
No 456
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.38 E-value=3.7e-08 Score=107.94 Aligned_cols=74 Identities=19% Similarity=0.199 Sum_probs=64.1
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCCC--ceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNN--RFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALE 314 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p--~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~ 314 (388)
.+++..+|||||+||+.||++|.. +| .++|||||+++| +.+...++++++.+. +|++|+|+++.+.
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~------~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~-TVIvVeHd~~~i~ 553 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGS------GLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGN-TVIVVEHDEETIR 553 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhh------CCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCC-EEEEEECCHHHHh
Confidence 477899999999999999999998 65 899999999999 778888888877665 5999999999886
Q ss_pred HHHHHHHHH
Q psy14062 315 PELRKAVNF 323 (388)
Q Consensus 315 ~~~d~~~~y 323 (388)
.+|++...
T Consensus 554 -~aD~vi~L 561 (924)
T TIGR00630 554 -AADYVIDI 561 (924)
T ss_pred -hCCEEEEe
Confidence 78876654
No 457
>PRK13695 putative NTPase; Provisional
Probab=98.29 E-value=4e-07 Score=81.01 Aligned_cols=71 Identities=8% Similarity=0.009 Sum_probs=47.3
Q ss_pred eeeeCCccccHHHHHHHHHHcCCCCCCCceEEecc--chhhH-HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 246 YYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQE--PIAKM-EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 246 ~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDE--P~s~L-e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
...+|+++.-...+++.... .|+++|+|| |+..+ ..+...+.+..+.+. .+++++|+ ..+..+++++..
T Consensus 76 ~~~lsgle~~~~~l~~~~l~------~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~-~~i~v~h~-~~~~~~~~~i~~ 147 (174)
T PRK13695 76 VVNLEDLERIGIPALERALE------EADVIIIDEIGKMELKSPKFVKAVEEVLDSEK-PVIATLHR-RSVHPFVQEIKS 147 (174)
T ss_pred EEehHHHHHHHHHHHHhccC------CCCEEEEECCCcchhhhHHHHHHHHHHHhCCC-eEEEEECc-hhhHHHHHHHhc
Confidence 34577877776666655555 799999999 55455 445556666654444 58899997 456667777655
Q ss_pred HH
Q psy14062 323 FL 324 (388)
Q Consensus 323 y~ 324 (388)
..
T Consensus 148 ~~ 149 (174)
T PRK13695 148 RP 149 (174)
T ss_pred cC
Confidence 53
No 458
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.25 E-value=5.4e-06 Score=78.23 Aligned_cols=126 Identities=32% Similarity=0.545 Sum_probs=80.9
Q ss_pred cccEEEcCCCCCcceeehhhhhhcCcc-chhhhhccceeEecccCCCCCcceEEEEEEeccccCC-CCccccccCCceEE
Q psy14062 157 RFNAIIGPNGSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK-PNEEYEIIPGTDLE 234 (388)
Q Consensus 157 ~~ngIiGpngSGKs~i~da~i~vlg~~-~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~-~~~~~~~~~~~~l~ 234 (388)
.+++|+|||||||||+.+++.++++.. ...+|..+...+++... ......+.|.+.|++.... ...... ....+.
T Consensus 26 ~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~-~~~~~~~~v~~~fq~~~~~~~~~~~~--~~~~lt 102 (251)
T cd03273 26 QFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRG-QAGITKASVTIVFDNSDKSQSPIGFE--NYPEIT 102 (251)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCC-CCCCcEEEEEEEEEcCCcccCccccc--CCceEE
Confidence 345999999999999999999998864 33455554433433221 1234567888888532100 000000 112455
Q ss_pred EEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH
Q psy14062 235 IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM 285 (388)
Q Consensus 235 ~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L 285 (388)
+.|.........+.+++....+..+..+|..+|+..+++.++|.|+.+..+
T Consensus 103 V~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~ 153 (251)
T cd03273 103 VTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKV 153 (251)
T ss_pred EEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHH
Confidence 665544333344556776667788999999999988788899999887776
No 459
>KOG0964|consensus
Probab=98.24 E-value=2.8e-05 Score=82.89 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=14.5
Q ss_pred cceeEecccCCCCCcceEEEEE
Q psy14062 191 KLSVLMHKSDQVGGVSRCSVAI 212 (388)
Q Consensus 191 ~i~~l~q~~~~~~~~~~~eV~~ 212 (388)
.|..+|.++....+....+|.+
T Consensus 77 ~VEIvF~nsdnr~~~~k~Ev~l 98 (1200)
T KOG0964|consen 77 SVEIVFDNSDNRLPRGKSEVSL 98 (1200)
T ss_pred EEEEEEeCcccccCCCCCeEEE
Confidence 4788898877654445556654
No 460
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.18 E-value=9.8e-06 Score=76.34 Aligned_cols=139 Identities=30% Similarity=0.510 Sum_probs=90.1
Q ss_pred EEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 77 i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
|..+.+.||++|.+...++|+ ..+++|+|||||||||||++|+
T Consensus 1 i~~i~l~nf~~~~~~~~~~~~------------------------------------~~~~~i~G~NGsGKStll~ai~- 43 (247)
T cd03275 1 LKRLELENFKSYKGRHVIGPF------------------------------------DRFTCIIGPNGSGKSNLMDAIS- 43 (247)
T ss_pred CcEEEEECccccCCCeeecCC------------------------------------CCeEEEECCCCCCHHHHHHHHH-
Confidence 357889999999877666544 4699999999999999999999
Q ss_pred cccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccC-CCCCcceEEEEEEeccccCCCCccccccCCceEEE
Q psy14062 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD-QVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEI 235 (388)
Q Consensus 157 ~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~-~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~ 235 (388)
++.++. +|.... .....+++... .......+.|.+.|.. ... ....+
T Consensus 44 ---~~l~~~-~~~~r~-----------------~~~~~~i~~~~~~~~~~~~~~v~~~f~~----~~~-------~~~~~ 91 (247)
T cd03275 44 ---FVLGEK-SSHLRS-----------------KNLKDLIYRARVGKPDSNSAYVTAVYED----DDG-------EEKTF 91 (247)
T ss_pred ---HHhCCC-cccccc-----------------cchhhhcccCccccCCCceEEEEEEEEc----CCC-------cEEEE
Confidence 666543 344211 11111222211 1112234555555531 111 12223
Q ss_pred EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH
Q psy14062 236 ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM 285 (388)
Q Consensus 236 ~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L 285 (388)
.+.. ..+...|.++|....+.++.+.|..+|++.+.+.++|.|+-+..+
T Consensus 92 ~~~~-~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i 140 (247)
T cd03275 92 RRII-TGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESI 140 (247)
T ss_pred EEEE-ECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhh
Confidence 3333 445566788888888889999999999998888899998776665
No 461
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.16 E-value=1e-06 Score=79.45 Aligned_cols=34 Identities=29% Similarity=0.534 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCccee
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNV 172 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i 172 (388)
|+.++|+||||||||||+++|+ +++ |+..|.+.+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~----~~i-~~~~~~i~i 58 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALL----AFI-PPDERIITI 58 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHH----hhc-CCCCCEEEE
Confidence 8999999999999999999999 888 666665443
No 462
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.12 E-value=4e-06 Score=84.85 Aligned_cols=87 Identities=9% Similarity=0.056 Sum_probs=57.3
Q ss_pred cEEEEEEEeeceEEec-CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSYA-GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~-~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
.+....+. +.|. +..+++ .+ +.|.+ |++++|+||||||||||++
T Consensus 139 ~~~r~~v~----~~l~TGi~aID--------~L-~~I~~----------------------Gqri~I~G~SGsGKTTLL~ 183 (450)
T PRK06002 139 AMTRARVE----TGLRTGVRVID--------IF-TPLCA----------------------GQRIGIFAGSGVGKSTLLA 183 (450)
T ss_pred CeEeecce----EEcCCCcEEee--------ee-ceecC----------------------CcEEEEECCCCCCHHHHHH
Confidence 45566666 6674 445553 55 47888 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeeh---hhhhhcCc-cchhhhhccceeEecccC
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVID---SMLFVFGY-RASKIRANKLSVLMHKSD 200 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~d---a~i~vlg~-~~~~lr~~~i~~l~q~~~ 200 (388)
+|+ ++. .+.+|.+.+.| ..+.-+.. .....|.+.+++++|...
T Consensus 184 ~Ia----~l~-~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 184 MLA----RAD-AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHh----CCC-CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 999 776 45567655432 22221111 112235567899998654
No 463
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.01 E-value=5.3e-06 Score=82.65 Aligned_cols=44 Identities=25% Similarity=0.626 Sum_probs=36.0
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
|.+..|.+.||++|.... +++. ..+++|+|||||||||+|.+|
T Consensus 1 M~l~~L~i~nFR~~~~~~--------------l~~~-----------------------~~~nvi~G~NGsGKT~lLeAi 43 (365)
T TIGR00611 1 MYLSRLELTDFRNYDAVD--------------LELS-----------------------PGVNVIVGPNGQGKTNLLEAI 43 (365)
T ss_pred CEEEEEEEeCCcceeeeE--------------EEEC-----------------------CCeEEEECCCCCCHHHHHHHH
Confidence 568899999999887432 2333 469999999999999999999
Q ss_pred h
Q psy14062 155 L 155 (388)
Q Consensus 155 ~ 155 (388)
+
T Consensus 44 ~ 44 (365)
T TIGR00611 44 Y 44 (365)
T ss_pred H
Confidence 8
No 464
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=97.97 E-value=2.7e-06 Score=81.98 Aligned_cols=46 Identities=30% Similarity=0.559 Sum_probs=36.8
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
|.+.+|++.||+-|. +..+++.+ ++.+.|||||||||||+|.+|
T Consensus 1 mrLrkiSl~nfr~f~--------------~lditf~e----------------------~~ttIivgpNGsGKTtvLdai 44 (440)
T COG3950 1 MRLRKISLNNFRCFL--------------NLDITFGE----------------------SETTIIVGPNGSGKTTVLDAI 44 (440)
T ss_pred Cccchhhhhhhhhhh--------------hceeecCC----------------------CceEEEECCCCCChhhHHHHH
Confidence 456788888887554 44566666 789999999999999999998
Q ss_pred hh
Q psy14062 155 LF 156 (388)
Q Consensus 155 ~~ 156 (388)
..
T Consensus 45 r~ 46 (440)
T COG3950 45 RN 46 (440)
T ss_pred HH
Confidence 74
No 465
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.93 E-value=6e-07 Score=84.69 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|+.++|+||+|||||||++.|+
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~ 37 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIA 37 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999999
No 466
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.92 E-value=7.8e-05 Score=69.75 Aligned_cols=122 Identities=25% Similarity=0.385 Sum_probs=72.5
Q ss_pred hcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEE
Q psy14062 156 FRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEI 235 (388)
Q Consensus 156 ~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~ 235 (388)
+.+++|+||||||||++++++.++++......|......+++..... ....+.|.+.|.. .+.. .........+
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~-~~~~~~v~i~~~~----~~~~-~~~~~~~~~i 96 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGP-SVMSAYVEIIFDN----SDNR-FPIDKEEVRL 96 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCC-CCceEEEEEEEEc----CCCc-cCCCCCEEEE
Confidence 34559999999999999999999987654434433233333332221 1234566666632 1111 1111234455
Q ss_pred EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhh
Q psy14062 236 ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAK 284 (388)
Q Consensus 236 ~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~ 284 (388)
.|..... ...+.+.+......++..++..+|+...++.+++.++....
T Consensus 97 ~r~ig~~-~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~ 144 (243)
T cd03272 97 RRTIGLK-KDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINS 144 (243)
T ss_pred EEEEECC-CCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHH
Confidence 5544332 34567777777788899999998888766555566654433
No 467
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.92 E-value=4.2e-06 Score=78.12 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCChhhH-Hhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNV-IDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTL-l~~i~ 155 (388)
|++++|+|||||||||| ++.++
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~ 46 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAY 46 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999 56666
No 468
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.88 E-value=5.6e-06 Score=75.83 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAII 162 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIi 162 (388)
|.+++|+||||||||||+++|+ +++
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~----~~l 30 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIY----EQL 30 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHH----HHh
Confidence 8899999999999999999999 666
No 469
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.88 E-value=8.2e-06 Score=73.45 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIG 163 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiG 163 (388)
|++++|+||||||||||+++|+ +..+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~----~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALR----QREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHh----ccCC
Confidence 7899999999999999999999 6653
No 470
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.86 E-value=1.1e-05 Score=75.22 Aligned_cols=48 Identities=23% Similarity=0.414 Sum_probs=36.2
Q ss_pred hhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCccee
Q psy14062 120 LLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNV 172 (388)
Q Consensus 120 ~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i 172 (388)
+++.|+++........+++|+||||||||||+++|+ +++ ++.+|.+.+
T Consensus 19 l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~----~~l-~~~~g~~~v 66 (229)
T PRK09270 19 LLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLE----ALL-QQDGELPAI 66 (229)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHH----HHh-hhccCCceE
Confidence 445566665444557799999999999999999999 888 455677444
No 471
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=97.82 E-value=0.0008 Score=66.39 Aligned_cols=44 Identities=25% Similarity=0.582 Sum_probs=35.9
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
|.+..|.+.||..|....+ .|+ ..++.++|+||+|||+||.+|
T Consensus 1 M~l~~L~L~nFRNy~~~~l--~~~-----------------------------------p~~nvl~G~NgqGKTNlLEAI 43 (363)
T COG1195 1 MYLLSLLLRNFRNYAELDL--DLS-----------------------------------PGVNVLVGENGQGKTNLLEAI 43 (363)
T ss_pred CceeeeehhhcCCccccee--ccC-----------------------------------CCcEEEECCCCCchHHHHHHH
Confidence 4577899999998874433 333 579999999999999999999
Q ss_pred h
Q psy14062 155 L 155 (388)
Q Consensus 155 ~ 155 (388)
.
T Consensus 44 ~ 44 (363)
T COG1195 44 Y 44 (363)
T ss_pred H
Confidence 8
No 472
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.80 E-value=1.1e-05 Score=72.10 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcC
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGP 164 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGp 164 (388)
|++++|+||||||||||+++++ +++++
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la----~~l~~ 29 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIA----ALFSA 29 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHH----HhcCC
Confidence 8999999999999999999999 77744
No 473
>COG1106 Predicted ATPases [General function prediction only]
Probab=97.79 E-value=1.3e-05 Score=79.17 Aligned_cols=46 Identities=33% Similarity=0.557 Sum_probs=39.1
Q ss_pred EEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 76 IITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 76 ~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
||..+.+.|||||++....+ ++.+.+|+|+||||||+||.++.
T Consensus 1 MI~~~~IkNFkSf~e~~~~~-------------------------------------~~~in~I~G~N~sGKSNlleAl~ 43 (371)
T COG1106 1 MIKSFKIKNFKSFRELELED-------------------------------------FGKINIIYGANGAGKSNLLEALY 43 (371)
T ss_pred CceEEEecccccHHHhhhcc-------------------------------------ccceEEEEcCCCCchhHHHHHHH
Confidence 57889999999998765431 27899999999999999999998
Q ss_pred hcc
Q psy14062 156 FRF 158 (388)
Q Consensus 156 ~~~ 158 (388)
++.
T Consensus 44 f~~ 46 (371)
T COG1106 44 FLK 46 (371)
T ss_pred HHH
Confidence 664
No 474
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.75 E-value=0.0034 Score=65.02 Aligned_cols=100 Identities=20% Similarity=0.356 Sum_probs=54.6
Q ss_pred cEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEe
Q psy14062 135 RFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHF 214 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~ 214 (388)
.+++|.|..|+|||-++.+|. .++|-.++.. + .-.|.. | ..|.-+|.-+ .+..
T Consensus 23 GltVlTGETGAGKSIiidAl~----lllG~ra~~~--~-----VR~G~~----~-a~v~a~F~~~--~~~~--------- 75 (557)
T COG0497 23 GLTVLTGETGAGKSIIIDALG----LLLGGRADAS--L-----VRHGAK----R-AEVEAIFDLD--NPPA--------- 75 (557)
T ss_pred CceEEecCCCCcHhHHHHHHH----HHhCCCCCcc--h-----hcCCCc----e-eEEEEEecCC--chHH---------
Confidence 599999999999999999999 6666432221 1 111211 0 1122222211 0000
Q ss_pred ccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHH---HHHHHHHH
Q psy14062 215 AQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFK---EVAKVLRD 265 (388)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~---~Ia~aL~~ 265 (388)
..+..... .+ +..++.+.|.....+++.+++||..+.+. .++..|..
T Consensus 76 ~~~L~e~g--ie--~~~~iilrR~i~~~GrSr~~INg~~Vs~~~L~~l~~~Li~ 125 (557)
T COG0497 76 RAWLEENG--IE--DDEEVILRRVISADGRSRAFINGQPVSLAQLKELGQLLID 125 (557)
T ss_pred HHHHHHcC--CC--CcCcEEEEEEEcCCCceeEEECCEEeeHHHHHHHHHhhhe
Confidence 00000000 01 11256677777788899999999888765 45555555
No 475
>PF13175 AAA_15: AAA ATPase domain
Probab=97.74 E-value=2.1e-05 Score=78.85 Aligned_cols=43 Identities=35% Similarity=0.554 Sum_probs=34.4
Q ss_pred EEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 77 i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|+.+.+.||++|++...+ .|+ ..+++|||.|||||||+|.+|.
T Consensus 1 ik~i~IkNfR~i~~~~~i-~~~-----------------------------------~~itiiiG~N~sGKT~IL~aL~ 43 (415)
T PF13175_consen 1 IKKIRIKNFRSIKDSGEI-NFD-----------------------------------EDITIIIGENNSGKTNILEALD 43 (415)
T ss_pred CcEEEEecccccCcccee-ecC-----------------------------------CceEEEEccCCCCHHHHHHHHH
Confidence 357889999999876222 332 4799999999999999999995
No 476
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.72 E-value=1.4e-05 Score=77.08 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=32.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcC-CCCCcceeehhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGP-NGSGKSNVIDSMLFV 179 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGp-ngSGKs~i~da~i~v 179 (388)
.-++||.||||||||||+++|. +++.. +++|++.+++.+-|.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~----~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQ----ALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHH----HHHhhcCCCCceEEEeccccc
Confidence 4689999999999999999999 77732 456787776655443
No 477
>KOG0063|consensus
Probab=97.71 E-value=1.2e-06 Score=86.66 Aligned_cols=69 Identities=16% Similarity=0.116 Sum_probs=50.6
Q ss_pred CCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHH
Q psy14062 243 NSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPEL 317 (388)
Q Consensus 243 ~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~ 317 (388)
++....||||+-||.+||.+... ..++.++|||.+.| -..+..++.+..-.. -+++|+||+..+.-..
T Consensus 208 ~re~~~lsggelqrfaia~~~vq------~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~-YiIVVEHDLsVLDylS 280 (592)
T KOG0063|consen 208 DREVEQLSGGELQRFAIAMVCVQ------KADVYMFDEPSSYLDVKQRLKAAITIRSLINPDR-YIIVVEHDLSVLDYLS 280 (592)
T ss_pred Hhhhhhcccchhhhhhhhhhhhh------hcceeEecCCcccchHHHhhhHHHHHHHhhCCCC-eEEEEEeechHHHhhh
Confidence 45677899999999999999999 89999999999988 112223444333322 2678899988776554
Q ss_pred H
Q psy14062 318 R 318 (388)
Q Consensus 318 d 318 (388)
|
T Consensus 281 D 281 (592)
T KOG0063|consen 281 D 281 (592)
T ss_pred c
Confidence 3
No 478
>PF11398 DUF2813: Protein of unknown function (DUF2813); InterPro: IPR022602 This entry contains YbjD from Escherichia coli (strain K12), which is a conserved protein with a nucleotide triphosphate binding domain.
Probab=97.70 E-value=4.2e-05 Score=75.96 Aligned_cols=28 Identities=29% Similarity=0.581 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCC
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN 165 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn 165 (388)
.+.+++||+|++||||+|.+|+ -++||.
T Consensus 22 ~~~t~liG~N~~GKss~l~Al~----~~l~~~ 49 (373)
T PF11398_consen 22 DDNTVLIGENNWGKSSLLDALS----LLLSPS 49 (373)
T ss_pred cCceEEEcCCCccHhHHHHHHH----HHhCCC
Confidence 4589999999999999999999 666554
No 479
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.70 E-value=2.9e-05 Score=80.15 Aligned_cols=58 Identities=14% Similarity=0.252 Sum_probs=48.0
Q ss_pred EEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC
Q psy14062 86 KSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN 165 (388)
Q Consensus 86 ksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn 165 (388)
+.|+...++. ++++.+.. |+.++|+||||||||||++.|. +++ |+
T Consensus 192 ~v~Gq~~~~~--------al~laa~~----------------------G~~llliG~~GsGKTtLak~L~----gll-pp 236 (506)
T PRK09862 192 DVIGQEQGKR--------GLEITAAG----------------------GHNLLLIGPPGTGKTMLASRIN----GLL-PD 236 (506)
T ss_pred EEECcHHHHh--------hhheeccC----------------------CcEEEEECCCCCcHHHHHHHHh----ccC-CC
Confidence 4566665544 88888888 9999999999999999999999 999 88
Q ss_pred CCCcceeehhhhh
Q psy14062 166 GSGKSNVIDSMLF 178 (388)
Q Consensus 166 gSGKs~i~da~i~ 178 (388)
.+|...+....++
T Consensus 237 ~~g~e~le~~~i~ 249 (506)
T PRK09862 237 LSNEEALESAAIL 249 (506)
T ss_pred CCCcEEEecchhh
Confidence 8998777665543
No 480
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.69 E-value=9.1e-06 Score=91.51 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=61.8
Q ss_pred eCCCCeeeeCCccccHHHHHHHHHH-------cCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 241 YDNSSYYTLNGKKVHFKEVAKVLRD-------HGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 241 ~~~~~~~~LSgGq~qr~~Ia~aL~~-------~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH 308 (388)
...+++..||||+++++.+|.+|+. -|+ +|++||+||||++| +.++..|..+...+. +|+++||
T Consensus 943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~---~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~-~i~iisH 1018 (1042)
T TIGR00618 943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGT---VLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSK-MIGIISH 1018 (1042)
T ss_pred CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCC---CCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEeC
Confidence 3456788999999999999999875 222 58899999999999 667788888876554 4889999
Q ss_pred hHHHHHHHHHHH
Q psy14062 309 DLKALEPELRKA 320 (388)
Q Consensus 309 ~l~~l~~~~d~~ 320 (388)
+++.....++++
T Consensus 1019 ~~~~~~~~~~~i 1030 (1042)
T TIGR00618 1019 VPEFRERIPHRI 1030 (1042)
T ss_pred cHHHHHhhCCEE
Confidence 999988887764
No 481
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.68 E-value=3.6e-05 Score=84.65 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=42.9
Q ss_pred eCCccccHHHHHHHHHHcCCCCCCCceEEeccc---hhhH---HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHH
Q psy14062 249 LNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEP---IAKM---EVLYGKYDEERTEKLTRVQLVETDLKALEPELRK 319 (388)
Q Consensus 249 LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP---~s~L---e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~ 319 (388)
+|-=+....+++.+|... ..+.++|+||| |+.+ .-....+..+.+....+++++||. .++...+++
T Consensus 667 ~STF~~E~~~~~~il~~a----t~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~-~el~~l~~~ 738 (854)
T PRK05399 667 RSTFMVEMTETANILNNA----TERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHY-HELTELEEK 738 (854)
T ss_pred cccHHHHHHHHHHHHHhC----CCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEech-HHHHHHhhh
Confidence 344456677888888762 25789999999 6665 333445555555433458899998 555555554
No 482
>PRK08149 ATP synthase SpaL; Validated
Probab=97.67 E-value=2.6e-05 Score=78.74 Aligned_cols=32 Identities=13% Similarity=0.357 Sum_probs=29.6
Q ss_pred ccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 101 EVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 101 ~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+++++ +.+.+ |++++|+||||||||||+++|+
T Consensus 141 aid~l-l~i~~----------------------Gq~i~I~G~sG~GKTTLl~~i~ 172 (428)
T PRK08149 141 AIDGL-LTCGV----------------------GQRMGIFASAGCGKTSLMNMLI 172 (428)
T ss_pred EEeee-eeEec----------------------CCEEEEECCCCCChhHHHHHHh
Confidence 45588 99999 9999999999999999999999
No 483
>COG4637 Predicted ATPase [General function prediction only]
Probab=97.64 E-value=2e-05 Score=75.33 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=48.9
Q ss_pred eeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHH
Q psy14062 246 YYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPE 316 (388)
Q Consensus 246 ~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~ 316 (388)
.+.||.|..+.++++.+|.+ ...|.++++|||-.+| -.+...+.+..+.. .|+++||..+.+...
T Consensus 268 ~~eLSDGTlRfl~l~t~Lls----p~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s--Qv~VsTHS~rLl~~~ 337 (373)
T COG4637 268 DRELSDGTLRFLALATLLLS----PRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS--QVIVSTHSPRLLNAV 337 (373)
T ss_pred hhhccccHHHHHHHHHHHcC----CCCCceeEecCcccccCHhHHHHHHHHHHHhhccc--eEEEEeCCHHHHhhc
Confidence 34899999999999999877 3368899999999888 34444555444443 589999987766654
No 484
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.61 E-value=3.3e-05 Score=78.14 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=31.8
Q ss_pred ccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEE
Q psy14062 101 EVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAII 162 (388)
Q Consensus 101 ~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIi 162 (388)
+|+++ |.+.+ |++++|+||||||||||+++|+ +..
T Consensus 145 aID~l-l~I~~----------------------GQ~igI~G~sGaGKSTLl~~I~----g~~ 179 (434)
T PRK07196 145 AINGL-LTIGK----------------------GQRVGLMAGSGVGKSVLLGMIT----RYT 179 (434)
T ss_pred eccce-EeEec----------------------ceEEEEECCCCCCccHHHHHHh----ccc
Confidence 45699 99999 9999999999999999999999 655
No 485
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.60 E-value=3.9e-05 Score=75.05 Aligned_cols=61 Identities=16% Similarity=0.125 Sum_probs=42.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCc--cch-hhhhccceeEeccc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGY--RAS-KIRANKLSVLMHKS 199 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~--~~~-~lr~~~i~~l~q~~ 199 (388)
+++++++|||||||||++..++ +.+ .+..|++.+.+++.+-.+. +.. .....++.++++..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA----~~l-~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~ 177 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLA----HKY-KAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKE 177 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHH----HHH-HhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCC
Confidence 7899999999999999999999 666 3445788888887653221 111 12234477777643
No 486
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.60 E-value=4.1e-05 Score=77.84 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=37.8
Q ss_pred ccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceee
Q psy14062 101 EVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVI 173 (388)
Q Consensus 101 ~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~ 173 (388)
+++++ |.+.+ |++++|+|+||||||||+++|+ +.. ++++|.+.++
T Consensus 148 vid~l-~~i~~----------------------Gq~i~I~G~sG~GKStLl~~I~----~~~-~~~~gvI~~~ 192 (438)
T PRK07721 148 AIDSL-LTVGK----------------------GQRVGIFAGSGVGKSTLMGMIA----RNT-SADLNVIALI 192 (438)
T ss_pred hhhee-eeecC----------------------CcEEEEECCCCCCHHHHHHHHh----ccc-CCCeEEEEEE
Confidence 34588 99999 9999999999999999999999 777 5567765554
No 487
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.60 E-value=2.8e-05 Score=70.49 Aligned_cols=37 Identities=27% Similarity=0.476 Sum_probs=28.2
Q ss_pred EEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFV 179 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~v 179 (388)
+++|+||||||||||.++|+ +++ +.|++.+++.+-|.
T Consensus 1 iigi~G~~GsGKSTl~~~l~----~~l---~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEII----EQL---GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHH----HHh---CCCCeEEEEecccc
Confidence 47999999999999999999 665 24566666555443
No 488
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.57 E-value=4.3e-05 Score=74.71 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKS 170 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs 170 (388)
|++++|+||||||||||+++|+ +.. .++.|.+
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia----~~~-~~~~~vi 100 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIA----RGT-TADVNVI 100 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHh----CCC-CCCEEEE
Confidence 9999999999999999999999 666 3344443
No 489
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.57 E-value=4.3e-05 Score=68.07 Aligned_cols=22 Identities=32% Similarity=0.680 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|++++|+||||||||||+++|+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~ 22 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYAR 22 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 490
>PLN02796 D-glycerate 3-kinase
Probab=97.57 E-value=2.4e-05 Score=76.70 Aligned_cols=35 Identities=20% Similarity=0.451 Sum_probs=26.2
Q ss_pred EEEEEcCCCCChhhHHhhhhhcccEEEcCCC--CCcceeeh
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLFRFNAIIGPNG--SGKSNVID 174 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~~~ngIiGpng--SGKs~i~d 174 (388)
+++|+||||||||||++.|. +++.+.+ .|.+.++|
T Consensus 102 iIGI~G~sGSGKSTLa~~L~----~lL~~~g~~~g~IsiDd 138 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALV----YLFNATGRRAASLSIDD 138 (347)
T ss_pred EEEEECCCCCcHHHHHHHHH----HHhcccCCceeEEEECC
Confidence 48999999999999999999 6663321 34455544
No 491
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.56 E-value=4.7e-05 Score=74.20 Aligned_cols=58 Identities=10% Similarity=-0.026 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCCCCCceEEeccchhhHHHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHHH
Q psy14062 257 KEVAKVLRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFL 324 (388)
Q Consensus 257 ~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~Le~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y~ 324 (388)
..+..+|.. +|+++++|||.+. ++...+.... .+...++.+.|..+ +....+|+..+.
T Consensus 209 ~~l~~~Lr~------~pd~ii~gE~r~~--e~~~~l~a~~-~g~~~~i~T~Ha~~-~~~~~~Rl~~l~ 266 (308)
T TIGR02788 209 DLLQSCLRM------RPDRIILGELRGD--EAFDFIRAVN-TGHPGSITTLHAGS-PEEAFEQLALMV 266 (308)
T ss_pred HHHHHHhcC------CCCeEEEeccCCH--HHHHHHHHHh-cCCCeEEEEEeCCC-HHHHHHHHHHHh
Confidence 356667777 9999999999984 5666665554 33322456678766 444466665553
No 492
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.55 E-value=5.2e-05 Score=76.89 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=35.7
Q ss_pred ccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCccee
Q psy14062 101 EVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNV 172 (388)
Q Consensus 101 ~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i 172 (388)
+++++ |.+.+ |+.++|+||||||||||+++|+ +.. .++.|.+.+
T Consensus 135 ~id~l-~~i~~----------------------Gq~~~I~G~sG~GKStLl~~I~----~~~-~~~~~vi~~ 178 (422)
T TIGR02546 135 AIDGL-LTCGE----------------------GQRIGIFAGAGVGKSTLLGMIA----RGA-SADVNVIAL 178 (422)
T ss_pred eehhh-ccccC----------------------CCEEEEECCCCCChHHHHHHHh----CCC-CCCEEEEEE
Confidence 45588 99999 9999999999999999999999 666 444555433
No 493
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.54 E-value=5.4e-05 Score=67.35 Aligned_cols=22 Identities=36% Similarity=0.677 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|++++|+||||||||||++.|+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~ 22 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALL 22 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999999999
No 494
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.53 E-value=3.6e-05 Score=71.34 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=26.0
Q ss_pred EEEEEcCCCCChhhHHhhhhhcccEEEcC-CCCCcceee
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLFRFNAIIGP-NGSGKSNVI 173 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~~~ngIiGp-ngSGKs~i~ 173 (388)
+++|.||||||||||.+.|. +++.+ ++++++.++
T Consensus 1 IigI~G~sGSGKTTla~~L~----~~l~~~~~~~~v~vi 35 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQ----ALLSRWPDHPNVELI 35 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHH----HHHhhcCCCCcEEEE
Confidence 47999999999999999999 66632 234565553
No 495
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.50 E-value=1.3e-05 Score=84.15 Aligned_cols=74 Identities=15% Similarity=0.195 Sum_probs=51.7
Q ss_pred CCCeeeeCCccccHHHHHHHHHHcC----CCCCCCceEEeccch-hhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHH
Q psy14062 243 NSSYYTLNGKKVHFKEVAKVLRDHG----VDLLNNRFLILQEPI-AKM-----EVLYGKYDEERTEKLTRVQLVETDLKA 312 (388)
Q Consensus 243 ~~~~~~LSgGq~qr~~Ia~aL~~~G----i~~~~p~~LLlDEP~-s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~ 312 (388)
..++..|||||++|+.+|++|+.-. ....+|+++|+|||+ ++| ..+...+.++ .+. +++++||+...
T Consensus 463 ~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~-~iiiish~~~~ 539 (562)
T PHA02562 463 DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDT-NVFVISHKDHD 539 (562)
T ss_pred ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCC-eEEEEECchhc
Confidence 3467889999999999999887100 001179999999998 667 5566666665 233 58999999654
Q ss_pred HHHHHHHH
Q psy14062 313 LEPELRKA 320 (388)
Q Consensus 313 l~~~~d~~ 320 (388)
. ..++++
T Consensus 540 ~-~~~d~~ 546 (562)
T PHA02562 540 P-QKFDRH 546 (562)
T ss_pred h-hhhhcE
Confidence 3 445553
No 496
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.50 E-value=6.4e-05 Score=68.37 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
|++++|+||||||||||+++|+.
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~ 27 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLE 27 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 89999999999999999999993
No 497
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.48 E-value=4e-05 Score=78.63 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCChhhHHhhhh
Q psy14062 133 YKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 133 ~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.|.++++||||||||||++..|+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHH
Confidence 47899999999999999999999
No 498
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.44 E-value=4.6e-05 Score=87.73 Aligned_cols=67 Identities=16% Similarity=0.084 Sum_probs=53.2
Q ss_pred eeeCCcccc------HHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHH----HhhhHHHHHHHhHH
Q psy14062 247 YTLNGKKVH------FKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERT----EKLTRVQLVETDLK 311 (388)
Q Consensus 247 ~~LSgGq~q------r~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~----e~~~~ii~vtH~l~ 311 (388)
..|||||++ |++||++|.. +|.+|||||||++| ..+...+..+.. ....+++++||++.
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~------~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~ 1271 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCL------NCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED 1271 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhc------CCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH
Confidence 579999999 9999999999 99999999999999 444445554422 11235999999999
Q ss_pred HHHHHHHH
Q psy14062 312 ALEPELRK 319 (388)
Q Consensus 312 ~l~~~~d~ 319 (388)
.+...|..
T Consensus 1272 ~~~~~~~~ 1279 (1311)
T TIGR00606 1272 FVELLGRS 1279 (1311)
T ss_pred HHHHHhhc
Confidence 99988753
No 499
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=97.44 E-value=8.7e-05 Score=75.24 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|++++|+||||||||||+++|+
T Consensus 175 Gqri~I~G~sG~GKTTLL~~Ia 196 (455)
T PRK07960 175 GQRMGLFAGSGVGKSVLLGMMA 196 (455)
T ss_pred CcEEEEECCCCCCccHHHHHHh
Confidence 9999999999999999999999
No 500
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.43 E-value=0.00018 Score=72.81 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGK 169 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGK 169 (388)
|+.++|+|+||+|||||+++|+ +.. .++.|.
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~----~~~-~~d~~v 185 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLC----NAP-DADSNV 185 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhc----CCC-CCCEEE
Confidence 9999999999999999999999 666 333443
Done!