Query psy14062
Match_columns 388
No_of_seqs 488 out of 3294
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 18:36:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 3.1E-36 1.1E-40 295.8 -10.4 206 73-320 23-234 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 1.5E-35 5E-40 290.8 -7.7 200 74-320 4-209 (359)
3 3rlf_A Maltose/maltodextrin im 100.0 6.2E-35 2.1E-39 288.2 -7.5 197 74-320 3-204 (381)
4 2olj_A Amino acid ABC transpor 100.0 5E-35 1.7E-39 276.5 -8.3 199 74-321 24-230 (263)
5 2pcj_A ABC transporter, lipopr 100.0 6.8E-35 2.3E-39 269.5 -11.5 198 74-319 4-208 (224)
6 1b0u_A Histidine permease; ABC 100.0 1.6E-34 5.4E-39 273.1 -9.5 201 73-321 5-224 (262)
7 3tif_A Uncharacterized ABC tra 100.0 1.2E-34 3.9E-39 269.9 -10.9 199 75-320 2-215 (235)
8 1ji0_A ABC transporter; ATP bi 100.0 6.5E-34 2.2E-38 265.6 -7.0 199 73-321 5-210 (240)
9 4g1u_C Hemin import ATP-bindin 100.0 1.3E-33 4.4E-38 267.4 -5.1 205 73-321 10-219 (266)
10 3gfo_A Cobalt import ATP-bindi 100.0 7.5E-35 2.6E-39 277.0 -14.1 199 74-320 7-214 (275)
11 2yyz_A Sugar ABC transporter, 100.0 6.4E-34 2.2E-38 279.7 -8.3 196 74-320 3-204 (359)
12 1z47_A CYSA, putative ABC-tran 100.0 4.8E-34 1.6E-38 280.0 -10.0 197 73-320 13-216 (355)
13 1oxx_K GLCV, glucose, ABC tran 100.0 3.9E-34 1.3E-38 281.0 -10.8 201 74-320 3-211 (353)
14 1v43_A Sugar-binding transport 100.0 1.2E-33 4.2E-38 278.9 -7.4 196 74-320 11-212 (372)
15 1vpl_A ABC transporter, ATP-bi 100.0 4.2E-34 1.4E-38 269.3 -10.4 197 74-321 15-217 (256)
16 2it1_A 362AA long hypothetical 100.0 9.9E-34 3.4E-38 278.6 -8.3 196 74-320 3-204 (362)
17 1g6h_A High-affinity branched- 100.0 2.1E-34 7.2E-39 271.6 -12.6 199 74-321 7-224 (257)
18 1g29_1 MALK, maltose transport 100.0 1.1E-33 3.7E-38 279.6 -8.8 200 74-320 3-210 (372)
19 3d31_A Sulfate/molybdate ABC t 100.0 2E-33 6.8E-38 275.2 -10.6 192 75-320 2-198 (348)
20 1sgw_A Putative ABC transporte 100.0 7.9E-34 2.7E-38 260.5 -13.5 193 72-322 8-205 (214)
21 2ihy_A ABC transporter, ATP-bi 100.0 7.9E-33 2.7E-37 263.7 -13.1 199 74-320 21-233 (279)
22 2nq2_C Hypothetical ABC transp 100.0 6.4E-32 2.2E-36 254.0 -7.0 185 74-321 4-200 (253)
23 2yz2_A Putative ABC transporte 100.0 2.8E-32 9.5E-37 258.3 -10.7 193 74-320 2-208 (266)
24 2onk_A Molybdate/tungstate ABC 100.0 4.8E-32 1.7E-36 252.9 -12.0 191 75-320 2-197 (240)
25 2d2e_A SUFC protein; ABC-ATPas 100.0 2.6E-32 8.8E-37 256.3 -14.6 199 74-321 3-215 (250)
26 2ixe_A Antigen peptide transpo 100.0 1.7E-31 5.9E-36 253.5 -10.5 196 73-320 15-226 (271)
27 2zu0_C Probable ATP-dependent 99.9 1.1E-31 3.9E-36 254.3 -14.5 199 74-320 20-235 (267)
28 1mv5_A LMRA, multidrug resista 99.9 8.5E-30 2.9E-34 238.1 -2.9 193 75-320 2-207 (243)
29 3nh6_A ATP-binding cassette SU 99.9 1.2E-30 4E-35 251.4 -9.4 195 73-321 52-259 (306)
30 2qi9_C Vitamin B12 import ATP- 99.9 1.5E-30 5.2E-35 244.0 -8.9 177 102-321 16-204 (249)
31 2ff7_A Alpha-hemolysin translo 99.9 1.1E-29 3.8E-34 237.9 -6.8 190 75-320 8-213 (247)
32 3gd7_A Fusion complex of cysti 99.9 6.4E-30 2.2E-34 253.8 -14.0 188 73-320 18-223 (390)
33 2ghi_A Transport protein; mult 99.9 2.9E-29 9.9E-34 236.8 -10.9 192 74-320 17-223 (260)
34 2pze_A Cystic fibrosis transme 99.9 3.7E-29 1.3E-33 231.8 -13.1 179 74-320 6-199 (229)
35 2pjz_A Hypothetical protein ST 99.9 6.6E-29 2.3E-33 234.6 -12.0 183 75-320 2-196 (263)
36 2cbz_A Multidrug resistance-as 99.9 4.3E-29 1.5E-33 232.5 -14.0 179 74-320 3-198 (237)
37 3b5x_A Lipid A export ATP-bind 99.9 1.2E-26 4.2E-31 242.3 -1.8 196 74-322 341-550 (582)
38 3qf4_A ABC transporter, ATP-bi 99.9 3.8E-27 1.3E-31 246.3 -9.6 193 74-320 341-547 (587)
39 2yl4_A ATP-binding cassette SU 99.9 1.1E-25 3.6E-30 235.8 -1.0 194 75-320 342-551 (595)
40 4a82_A Cystic fibrosis transme 99.9 3.1E-26 1.1E-30 239.0 -5.1 193 74-320 339-545 (578)
41 3qf4_B Uncharacterized ABC tra 99.9 3.9E-26 1.3E-30 239.1 -5.3 193 74-320 354-559 (598)
42 3ozx_A RNAse L inhibitor; ATP 99.9 2E-26 6.9E-31 237.9 -7.7 186 74-323 269-459 (538)
43 1yqt_A RNAse L inhibitor; ATP- 99.9 6E-26 2.1E-30 234.7 -5.2 183 74-323 287-475 (538)
44 3b60_A Lipid A export ATP-bind 99.9 4.5E-26 1.5E-30 238.0 -7.5 194 74-320 341-548 (582)
45 3bk7_A ABC transporter ATP-bin 99.9 2.8E-26 9.7E-31 239.9 -9.6 183 74-323 357-545 (607)
46 2bbs_A Cystic fibrosis transme 99.9 5E-27 1.7E-31 224.7 -15.3 162 102-320 54-228 (290)
47 1yqt_A RNAse L inhibitor; ATP- 99.9 2E-25 7E-30 230.7 -8.2 187 86-321 29-229 (538)
48 3bk7_A ABC transporter ATP-bin 99.9 2.8E-25 9.4E-30 232.4 -9.7 184 86-321 99-299 (607)
49 3ux8_A Excinuclease ABC, A sub 99.9 1.3E-24 4.3E-29 230.6 -5.6 72 242-321 196-274 (670)
50 3j16_B RLI1P; ribosome recycli 99.9 7.3E-25 2.5E-29 229.0 -10.9 174 102-323 363-541 (608)
51 3g5u_A MCG1178, multidrug resi 99.9 1.5E-23 5E-28 236.2 -3.6 196 74-320 387-594 (1284)
52 3g5u_A MCG1178, multidrug resi 99.8 2.9E-23 1E-27 233.7 -5.7 198 74-320 1030-1239(1284)
53 4f4c_A Multidrug resistance pr 99.8 1.4E-22 4.9E-27 228.6 -3.1 193 74-314 1076-1280(1321)
54 2iw3_A Elongation factor 3A; a 99.8 6.1E-23 2.1E-27 222.6 -10.0 71 243-320 896-968 (986)
55 4f4c_A Multidrug resistance pr 99.8 9E-22 3.1E-26 222.2 -2.7 188 74-314 415-617 (1321)
56 2iw3_A Elongation factor 3A; a 99.8 2.3E-22 8E-27 218.0 -7.4 178 72-322 433-617 (986)
57 3ozx_A RNAse L inhibitor; ATP 99.8 2.5E-22 8.6E-27 207.3 -7.0 169 134-321 25-208 (538)
58 3j16_B RLI1P; ribosome recycli 99.8 4.6E-23 1.6E-27 215.4 -13.9 172 134-321 103-292 (608)
59 4aby_A DNA repair protein RECN 99.8 1.2E-20 4.1E-25 188.5 -0.9 66 249-323 296-368 (415)
60 3ux8_A Excinuclease ABC, A sub 99.7 1.8E-21 6.1E-26 206.4 -12.8 74 242-323 537-618 (670)
61 2npi_A Protein CLP1; CLP1-PCF1 99.7 1E-20 3.5E-25 191.7 -8.4 165 127-319 131-313 (460)
62 4gp7_A Metallophosphoesterase; 99.7 1.1E-19 3.7E-24 160.3 -1.7 62 247-315 82-164 (171)
63 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 7.9E-20 2.7E-24 180.3 -8.0 75 243-319 274-353 (365)
64 1e69_A Chromosome segregation 99.7 2E-18 6.8E-23 167.3 -1.5 72 243-319 214-290 (322)
65 3b85_A Phosphate starvation-in 99.7 1.1E-19 3.8E-24 165.6 -10.2 137 134-316 22-164 (208)
66 1z6g_A Guanylate kinase; struc 99.7 8.2E-20 2.8E-24 167.5 -11.8 173 102-322 13-206 (218)
67 1ye8_A Protein THEP1, hypothet 99.7 5.2E-18 1.8E-22 150.8 -0.5 139 136-319 2-152 (178)
68 3pih_A Uvrabc system protein A 99.6 3.6E-18 1.2E-22 185.0 -5.2 74 242-320 799-877 (916)
69 3qkt_A DNA double-strand break 99.6 7.8E-18 2.7E-22 164.3 -3.6 75 243-319 243-322 (339)
70 1znw_A Guanylate kinase, GMP k 99.6 9.2E-20 3.1E-24 165.4 -17.2 161 134-323 20-201 (207)
71 1tq4_A IIGP1, interferon-induc 99.6 7.5E-18 2.6E-22 168.2 -5.2 193 100-324 37-251 (413)
72 2r6f_A Excinuclease ABC subuni 99.6 8.4E-18 2.9E-22 181.3 -6.2 75 241-323 838-920 (972)
73 2vf7_A UVRA2, excinuclease ABC 99.6 6.3E-19 2.2E-23 189.4 -16.5 72 242-321 724-803 (842)
74 2ygr_A Uvrabc system protein A 99.6 2.1E-17 7.2E-22 178.8 -4.8 75 241-323 856-938 (993)
75 2pt7_A CAG-ALFA; ATPase, prote 99.6 1.4E-16 4.7E-21 155.0 -1.4 119 134-325 171-289 (330)
76 3b9q_A Chloroplast SRP recepto 99.5 1.2E-17 4E-22 160.6 -13.0 158 104-308 92-255 (302)
77 2og2_A Putative signal recogni 99.5 7.4E-17 2.5E-21 158.3 -11.3 150 134-308 157-312 (359)
78 1w1w_A Structural maintenance 99.5 1.9E-13 6.4E-18 137.4 12.1 154 74-285 1-157 (430)
79 3sop_A Neuronal-specific septi 99.4 1.3E-16 4.4E-21 151.0 -12.9 147 136-311 4-151 (270)
80 3kta_A Chromosome segregation 99.4 2.6E-12 9E-17 113.1 14.1 150 74-285 1-151 (182)
81 3aez_A Pantothenate kinase; tr 99.4 5.7E-16 2E-20 149.5 -12.3 117 134-285 90-207 (312)
82 2eyu_A Twitching motility prot 99.3 6.9E-14 2.4E-18 131.6 -0.4 120 134-323 25-145 (261)
83 2jeo_A Uridine-cytidine kinase 99.3 9.9E-16 3.4E-20 142.4 -13.1 151 102-314 15-169 (245)
84 1tf7_A KAIC; homohexamer, hexa 99.3 1.7E-15 5.9E-20 156.1 -13.3 149 101-313 27-188 (525)
85 2ehv_A Hypothetical protein PH 99.3 3.2E-14 1.1E-18 131.2 -5.3 41 272-313 135-185 (251)
86 3thx_B DNA mismatch repair pro 99.3 9.1E-14 3.1E-18 150.8 -3.4 68 245-320 732-805 (918)
87 2v9p_A Replication protein E1; 99.3 2.1E-14 7.3E-19 137.7 -8.3 39 102-170 116-154 (305)
88 2dpy_A FLII, flagellum-specifi 99.3 1.4E-15 4.7E-20 153.2 -18.3 178 74-323 131-328 (438)
89 2o8b_B DNA mismatch repair pro 99.3 2.9E-13 9.8E-18 148.8 -1.5 160 73-319 749-921 (1022)
90 2o5v_A DNA replication and rep 99.3 3.1E-13 1.1E-17 132.6 -1.5 57 242-308 258-329 (359)
91 1rj9_A FTSY, signal recognitio 99.2 5.8E-14 2E-18 134.9 -7.9 151 134-309 102-257 (304)
92 3thx_A DNA mismatch repair pro 99.2 5.4E-13 1.8E-17 145.1 -3.3 69 246-319 719-793 (934)
93 3jvv_A Twitching mobility prot 99.2 9.8E-13 3.3E-17 129.0 -3.0 56 258-323 188-243 (356)
94 1ewq_A DNA mismatch repair pro 99.2 1.5E-12 5.1E-17 139.2 -2.2 61 248-313 635-701 (765)
95 2i3b_A HCR-ntpase, human cance 99.1 3.7E-13 1.3E-17 120.5 -6.5 138 134-310 1-149 (189)
96 4ad8_A DNA repair protein RECN 99.1 2E-10 6.7E-15 118.0 12.4 110 74-265 37-147 (517)
97 2w0m_A SSO2452; RECA, SSPF, un 99.1 3E-12 1E-16 116.3 -2.4 136 134-311 23-169 (235)
98 3asz_A Uridine kinase; cytidin 99.1 1.2E-13 4.2E-18 124.6 -12.0 59 245-310 86-161 (211)
99 4a74_A DNA repair and recombin 99.1 7.9E-13 2.7E-17 120.2 -7.0 22 134-155 25-46 (231)
100 1cr0_A DNA primase/helicase; R 99.1 2.8E-12 9.6E-17 122.1 -3.6 48 99-173 22-70 (296)
101 1htw_A HI0065; nucleotide-bind 99.1 2E-11 6.9E-16 106.1 1.2 78 86-208 15-92 (158)
102 3szr_A Interferon-induced GTP- 99.1 6.2E-13 2.1E-17 139.2 -10.6 68 136-207 47-114 (608)
103 1wb9_A DNA mismatch repair pro 99.1 5.7E-12 1.9E-16 135.4 -3.5 48 272-320 686-739 (800)
104 2qnr_A Septin-2, protein NEDD5 99.0 1.8E-12 6.3E-17 124.3 -7.3 145 137-311 21-168 (301)
105 1tf7_A KAIC; homohexamer, hexa 99.0 2.4E-11 8.1E-16 125.1 -0.9 61 242-310 347-417 (525)
106 2qag_B Septin-6, protein NEDD5 99.0 2.9E-10 9.8E-15 113.5 5.2 85 80-211 17-103 (427)
107 1lw7_A Transcriptional regulat 98.9 6E-12 2.1E-16 123.7 -8.3 34 134-172 170-207 (365)
108 2ewv_A Twitching motility prot 98.9 8.6E-11 2.9E-15 115.9 -1.2 122 133-323 135-256 (372)
109 2gza_A Type IV secretion syste 98.9 1E-10 3.5E-15 114.9 -1.0 133 126-324 167-300 (361)
110 1pui_A ENGB, probable GTP-bind 98.9 4.3E-11 1.5E-15 107.2 -3.5 47 246-298 147-199 (210)
111 1pzn_A RAD51, DNA repair and r 98.9 2.1E-11 7.2E-16 119.3 -6.2 108 134-285 131-244 (349)
112 2rcn_A Probable GTPase ENGC; Y 98.9 5.6E-11 1.9E-15 116.3 -4.9 112 134-263 215-328 (358)
113 1f2t_A RAD50 ABC-ATPase; DNA d 98.8 1.4E-09 4.7E-14 93.4 3.7 45 75-156 1-45 (149)
114 1nlf_A Regulatory protein REPA 98.8 6.7E-11 2.3E-15 111.7 -5.8 64 242-314 112-185 (279)
115 3e70_C DPA, signal recognition 98.8 2E-11 6.9E-16 118.4 -10.1 146 134-308 129-277 (328)
116 1qhl_A Protein (cell division 98.8 2E-10 6.9E-15 105.6 -3.1 38 135-177 28-65 (227)
117 2yhs_A FTSY, cell division pro 98.8 8E-10 2.8E-14 111.9 1.0 65 134-203 293-360 (503)
118 3auy_A DNA double-strand break 98.7 3.1E-07 1.1E-11 90.2 18.0 46 74-156 2-47 (371)
119 3euj_A Chromosome partition pr 98.7 2.4E-09 8.1E-14 108.6 2.4 49 102-178 20-68 (483)
120 2qm8_A GTPase/ATPase; G protei 98.7 1.5E-09 5.1E-14 105.6 0.4 81 86-202 37-119 (337)
121 1s96_A Guanylate kinase, GMP k 98.7 1.1E-09 3.7E-14 100.1 -1.1 129 134-315 16-145 (219)
122 1f2t_B RAD50 ABC-ATPase; DNA d 98.7 1.5E-10 5.2E-15 99.4 -6.7 69 243-319 52-131 (148)
123 1nij_A Hypothetical protein YJ 98.7 2.2E-11 7.4E-16 117.6 -13.5 157 135-309 5-188 (318)
124 2obl_A ESCN; ATPase, hydrolase 98.7 1.8E-09 6.1E-14 105.5 -1.2 177 75-323 46-239 (347)
125 3qks_A DNA double-strand break 98.7 8.6E-09 2.9E-13 92.9 3.4 47 75-158 1-47 (203)
126 2bbw_A Adenylate kinase 4, AK4 98.6 1.5E-10 5.2E-15 107.1 -10.5 37 134-172 27-63 (246)
127 2yv5_A YJEQ protein; hydrolase 98.6 7E-10 2.4E-14 106.3 -6.4 60 134-202 165-227 (302)
128 2qag_C Septin-7; cell cycle, c 98.6 3.1E-10 1.1E-14 113.4 -10.2 22 137-162 34-55 (418)
129 3tr0_A Guanylate kinase, GMP k 98.5 2.1E-08 7.1E-13 89.3 2.4 61 134-206 7-67 (205)
130 3pih_A Uvrabc system protein A 98.5 2.2E-09 7.4E-14 116.5 -5.5 73 242-322 458-537 (916)
131 1u0l_A Probable GTPase ENGC; p 98.5 4.3E-08 1.5E-12 93.6 3.7 61 134-202 169-232 (301)
132 1sq5_A Pantothenate kinase; P- 98.5 2.1E-08 7.1E-13 96.1 1.0 39 134-176 80-119 (308)
133 2oap_1 GSPE-2, type II secreti 98.4 2.5E-08 8.7E-13 102.1 0.5 53 97-176 245-297 (511)
134 1udx_A The GTP-binding protein 98.4 1.6E-08 5.6E-13 100.8 -1.0 30 243-278 247-276 (416)
135 3lnc_A Guanylate kinase, GMP k 98.4 5.1E-08 1.8E-12 89.0 2.3 35 102-158 17-52 (231)
136 2ygr_A Uvrabc system protein A 98.4 2.2E-08 7.6E-13 108.7 -1.7 73 242-322 515-594 (993)
137 2r6f_A Excinuclease ABC subuni 98.4 2.2E-08 7.5E-13 108.4 -2.0 72 242-321 498-576 (972)
138 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 5.8E-08 2E-12 96.1 0.1 51 272-325 139-197 (392)
139 2kjq_A DNAA-related protein; s 98.3 2.7E-08 9.2E-13 85.2 -2.2 22 134-155 36-57 (149)
140 1zp6_A Hypothetical protein AT 98.3 2.3E-07 8E-12 81.6 3.5 38 134-178 9-46 (191)
141 4ad8_A DNA repair protein RECN 98.3 4.5E-08 1.5E-12 100.4 -1.6 69 244-321 392-468 (517)
142 1t9h_A YLOQ, probable GTPase E 98.3 1.4E-07 4.6E-12 90.5 1.3 60 134-202 173-235 (307)
143 2vf7_A UVRA2, excinuclease ABC 98.3 4.3E-08 1.5E-12 105.5 -2.8 72 242-321 373-451 (842)
144 3c8u_A Fructokinase; YP_612366 98.3 1.5E-07 5.3E-12 84.5 0.8 37 134-174 22-60 (208)
145 3a00_A Guanylate kinase, GMP k 98.2 4.2E-07 1.4E-11 80.2 2.2 25 134-162 1-25 (186)
146 3kta_B Chromosome segregation 98.2 6.7E-08 2.3E-12 85.0 -3.4 74 242-320 58-136 (173)
147 1p9r_A General secretion pathw 98.1 7.5E-07 2.5E-11 88.9 3.0 52 119-177 154-205 (418)
148 3uie_A Adenylyl-sulfate kinase 98.1 4.1E-07 1.4E-11 81.1 0.7 38 134-177 25-64 (200)
149 3vaa_A Shikimate kinase, SK; s 98.1 1E-06 3.6E-11 78.4 3.2 33 101-155 14-46 (199)
150 1lvg_A Guanylate kinase, GMP k 98.1 6.9E-07 2.4E-11 79.8 1.7 22 134-155 4-25 (198)
151 1kgd_A CASK, peripheral plasma 98.1 8.4E-07 2.9E-11 77.9 2.0 22 134-155 5-26 (180)
152 4eun_A Thermoresistant glucoki 98.1 1.2E-06 4E-11 78.1 2.2 22 134-155 29-50 (200)
153 2j41_A Guanylate kinase; GMP, 98.0 1.2E-06 4.1E-11 77.8 2.1 22 134-155 6-27 (207)
154 3nwj_A ATSK2; P loop, shikimat 98.0 7.3E-07 2.5E-11 82.9 0.5 51 74-155 17-69 (250)
155 3lda_A DNA repair protein RAD5 98.0 2.7E-07 9.4E-12 91.6 -2.7 27 129-155 173-199 (400)
156 2f1r_A Molybdopterin-guanine d 98.0 3.3E-07 1.1E-11 80.4 -1.9 40 135-178 3-44 (171)
157 2bdt_A BH3686; alpha-beta prot 98.0 1.8E-06 6.1E-11 76.0 2.7 35 134-176 2-36 (189)
158 3tqc_A Pantothenate kinase; bi 98.0 2.1E-06 7.2E-11 82.7 3.2 40 136-179 94-134 (321)
159 3k1j_A LON protease, ATP-depen 98.0 5.4E-07 1.9E-11 94.1 -1.1 44 103-172 51-94 (604)
160 2x8a_A Nuclear valosin-contain 98.0 1.3E-06 4.3E-11 82.3 1.2 128 102-283 36-164 (274)
161 1zu4_A FTSY; GTPase, signal re 97.9 2E-06 6.8E-11 82.9 1.2 49 103-178 96-144 (320)
162 2vp4_A Deoxynucleoside kinase; 97.9 5E-06 1.7E-10 75.8 3.4 35 134-177 20-54 (230)
163 1rz3_A Hypothetical protein rb 97.9 3.3E-06 1.1E-10 75.3 1.7 40 134-178 22-61 (201)
164 1svm_A Large T antigen; AAA+ f 97.8 5E-06 1.7E-10 81.8 2.5 33 101-155 158-190 (377)
165 4e22_A Cytidylate kinase; P-lo 97.8 3.1E-06 1.1E-10 78.5 1.0 36 134-171 27-62 (252)
166 3ec2_A DNA replication protein 97.8 2.4E-06 8E-11 74.6 0.0 22 134-155 38-59 (180)
167 1ixz_A ATP-dependent metallopr 97.8 4.4E-06 1.5E-10 77.0 1.8 63 103-199 42-104 (254)
168 1vma_A Cell division protein F 97.8 4.2E-06 1.4E-10 80.1 1.4 40 134-178 104-143 (306)
169 1iy2_A ATP-dependent metallopr 97.8 5.5E-06 1.9E-10 77.6 1.8 63 103-199 66-128 (278)
170 1kag_A SKI, shikimate kinase I 97.7 8.2E-06 2.8E-10 70.3 1.4 22 134-155 4-25 (173)
171 1in4_A RUVB, holliday junction 97.7 3.8E-06 1.3E-10 81.1 -1.1 60 135-201 52-114 (334)
172 3tau_A Guanylate kinase, GMP k 97.7 1.7E-05 5.7E-10 71.2 3.1 22 134-155 8-29 (208)
173 3ney_A 55 kDa erythrocyte memb 97.7 2.2E-05 7.4E-10 70.3 3.4 24 134-157 19-42 (197)
174 1ls1_A Signal recognition part 97.6 9.6E-06 3.3E-10 77.1 0.9 39 134-177 98-136 (295)
175 1w1w_A Structural maintenance 97.6 3.4E-06 1.1E-10 84.3 -2.8 66 244-312 329-399 (430)
176 1e69_A Chromosome segregation 97.6 0.00012 4.2E-09 70.1 8.3 141 75-285 1-142 (322)
177 3cr8_A Sulfate adenylyltranfer 97.6 1.4E-05 4.8E-10 82.4 1.2 39 133-175 368-406 (552)
178 2cvh_A DNA repair and recombin 97.6 3E-05 1E-09 69.2 3.0 22 134-155 20-41 (220)
179 1knq_A Gluconate kinase; ALFA/ 97.5 3.7E-05 1.3E-09 66.4 3.3 22 134-155 8-29 (175)
180 2p67_A LAO/AO transport system 97.5 1.4E-05 4.9E-10 77.4 0.4 22 134-155 56-77 (341)
181 1n0w_A DNA repair protein RAD5 97.5 2.7E-05 9.1E-10 70.6 2.2 22 134-155 24-45 (243)
182 2px0_A Flagellar biosynthesis 97.4 2.3E-05 7.7E-10 74.6 0.5 39 134-177 105-144 (296)
183 3auy_A DNA double-strand break 97.4 1.4E-06 4.8E-11 85.5 -8.3 66 244-318 276-353 (371)
184 1oix_A RAS-related protein RAB 97.4 3.4E-05 1.1E-09 67.8 1.2 20 136-155 31-50 (191)
185 4eaq_A DTMP kinase, thymidylat 97.4 8.5E-05 2.9E-09 67.8 3.2 22 134-155 26-47 (229)
186 3t34_A Dynamin-related protein 97.3 7.8E-05 2.7E-09 72.5 2.5 30 136-170 36-67 (360)
187 1cke_A CK, MSSA, protein (cyti 97.3 0.0001 3.6E-09 66.2 3.1 22 134-155 5-26 (227)
188 1y63_A LMAJ004144AAA protein; 97.3 0.00013 4.5E-09 63.8 3.5 23 134-156 10-32 (184)
189 2qt1_A Nicotinamide riboside k 97.3 0.00012 4.2E-09 65.0 3.3 23 134-156 21-43 (207)
190 1jjv_A Dephospho-COA kinase; P 97.2 0.00012 4E-09 65.0 2.9 20 136-155 4-23 (206)
191 1sxj_E Activator 1 40 kDa subu 97.2 0.00012 4.1E-09 70.4 3.0 34 137-175 39-73 (354)
192 2ffh_A Protein (FFH); SRP54, s 97.2 9.2E-05 3.1E-09 73.8 1.6 40 134-178 98-137 (425)
193 3m6a_A ATP-dependent protease 97.2 6.6E-05 2.3E-09 77.3 0.4 35 134-173 108-142 (543)
194 2qor_A Guanylate kinase; phosp 97.2 0.00015 5.3E-09 64.4 2.7 24 134-157 12-35 (204)
195 2if2_A Dephospho-COA kinase; a 97.1 0.00016 5.6E-09 63.9 2.6 20 136-155 3-22 (204)
196 2f9l_A RAB11B, member RAS onco 97.1 0.00016 5.3E-09 63.7 2.2 20 136-155 7-26 (199)
197 2pez_A Bifunctional 3'-phospho 97.1 0.00022 7.4E-09 61.9 2.9 22 134-155 5-26 (179)
198 2www_A Methylmalonic aciduria 97.1 0.00011 3.9E-09 71.3 1.1 22 134-155 74-95 (349)
199 2dr3_A UPF0273 protein PH0284; 97.0 0.00024 8.2E-09 64.3 2.7 22 134-155 23-44 (247)
200 3t61_A Gluconokinase; PSI-biol 96.9 0.00033 1.1E-08 61.9 2.7 22 134-155 18-39 (202)
201 2yvu_A Probable adenylyl-sulfa 96.9 0.00027 9.3E-09 61.6 2.0 36 134-174 13-48 (186)
202 2dhr_A FTSH; AAA+ protein, hex 96.9 0.00033 1.1E-08 71.2 2.8 29 103-155 57-85 (499)
203 1j8m_F SRP54, signal recogniti 96.9 0.00021 7.2E-09 67.9 0.9 40 134-178 98-137 (297)
204 1odf_A YGR205W, hypothetical 3 96.8 0.00045 1.5E-08 65.3 2.9 28 133-164 30-57 (290)
205 3kb2_A SPBC2 prophage-derived 96.8 0.0005 1.7E-08 58.6 2.8 20 136-155 3-22 (173)
206 1ega_A Protein (GTP-binding pr 96.8 0.00034 1.2E-08 66.4 1.9 22 134-155 8-29 (301)
207 2ga8_A Hypothetical 39.9 kDa p 96.8 0.00038 1.3E-08 67.6 2.2 23 134-156 22-46 (359)
208 1m7g_A Adenylylsulfate kinase; 96.8 0.00055 1.9E-08 61.1 2.8 22 134-155 25-46 (211)
209 3cm0_A Adenylate kinase; ATP-b 96.8 0.00051 1.7E-08 59.6 2.4 22 134-155 4-25 (186)
210 1qhx_A CPT, protein (chloramph 96.7 0.00072 2.5E-08 58.1 3.1 23 134-156 3-25 (178)
211 2wji_A Ferrous iron transport 96.7 0.00065 2.2E-08 57.7 2.8 20 136-155 5-24 (165)
212 3ice_A Transcription terminati 96.7 0.0011 3.6E-08 65.2 4.3 23 134-156 174-196 (422)
213 1np6_A Molybdopterin-guanine d 96.6 0.00085 2.9E-08 58.6 2.9 23 134-156 6-28 (174)
214 3lw7_A Adenylate kinase relate 96.6 0.00085 2.9E-08 56.9 2.8 19 136-154 3-21 (179)
215 3hr8_A Protein RECA; alpha and 96.6 0.00041 1.4E-08 67.6 0.5 22 134-155 61-82 (356)
216 1m2o_B GTP-binding protein SAR 96.6 0.00095 3.2E-08 58.2 2.8 20 136-155 25-44 (190)
217 1sxj_C Activator 1 40 kDa subu 96.6 0.00046 1.6E-08 66.3 0.8 23 134-156 44-68 (340)
218 1f6b_A SAR1; gtpases, N-termin 96.6 0.00056 1.9E-08 60.2 1.2 20 136-155 27-46 (198)
219 1ex7_A Guanylate kinase; subst 96.6 0.00093 3.2E-08 59.0 2.6 20 136-155 3-22 (186)
220 1kht_A Adenylate kinase; phosp 96.6 0.0011 3.8E-08 57.4 3.1 23 134-156 3-25 (192)
221 2gj8_A MNME, tRNA modification 96.6 0.00097 3.3E-08 57.2 2.7 22 134-155 4-25 (172)
222 2zej_A Dardarin, leucine-rich 96.6 0.00091 3.1E-08 57.9 2.5 20 136-155 4-23 (184)
223 1lv7_A FTSH; alpha/beta domain 96.5 0.001 3.5E-08 61.0 2.9 21 136-156 47-67 (257)
224 3iij_A Coilin-interacting nucl 96.5 0.0013 4.5E-08 56.8 3.3 23 134-156 11-33 (180)
225 2jaq_A Deoxyguanosine kinase; 96.5 0.0011 3.9E-08 58.0 2.8 23 136-158 2-24 (205)
226 1q3t_A Cytidylate kinase; nucl 96.5 0.0012 4.2E-08 59.9 3.1 22 134-155 16-37 (236)
227 2wjg_A FEOB, ferrous iron tran 96.5 0.0012 4E-08 56.9 2.7 20 136-155 9-28 (188)
228 3qks_A DNA double-strand break 96.5 0.0044 1.5E-07 55.1 6.5 25 158-182 25-49 (203)
229 1via_A Shikimate kinase; struc 96.4 0.0012 4E-08 56.9 2.5 22 136-157 6-27 (175)
230 1ly1_A Polynucleotide kinase; 96.4 0.0013 4.6E-08 56.3 2.9 22 134-155 2-23 (181)
231 1vht_A Dephospho-COA kinase; s 96.4 0.0013 4.5E-08 58.7 2.9 22 134-155 4-25 (218)
232 2p5t_B PEZT; postsegregational 96.4 0.0011 3.8E-08 61.0 2.4 22 134-155 32-53 (253)
233 3r20_A Cytidylate kinase; stru 96.4 0.0014 4.7E-08 60.0 2.9 23 134-156 9-31 (233)
234 2ze6_A Isopentenyl transferase 96.4 0.0013 4.6E-08 60.6 2.9 21 136-156 3-23 (253)
235 3trf_A Shikimate kinase, SK; a 96.4 0.0016 5.4E-08 56.4 3.1 23 134-156 5-27 (185)
236 2rhm_A Putative kinase; P-loop 96.4 0.0014 4.7E-08 57.0 2.7 23 134-156 5-27 (193)
237 1f2t_A RAD50 ABC-ATPase; DNA d 96.4 0.0025 8.7E-08 53.9 4.2 23 158-180 25-47 (149)
238 2xau_A PRE-mRNA-splicing facto 96.4 0.0015 5E-08 70.1 3.3 70 243-318 185-260 (773)
239 3hnw_A Uncharacterized protein 96.4 0.13 4.5E-06 42.9 14.5 48 339-386 88-135 (138)
240 1gtv_A TMK, thymidylate kinase 96.3 0.00073 2.5E-08 59.9 0.5 23 136-158 2-24 (214)
241 1gvn_B Zeta; postsegregational 96.3 0.0017 5.9E-08 61.1 2.8 23 134-156 33-55 (287)
242 1fzq_A ADP-ribosylation factor 96.2 0.0019 6.6E-08 55.7 2.8 22 134-155 16-37 (181)
243 2v54_A DTMP kinase, thymidylat 96.2 0.0022 7.5E-08 56.3 3.1 25 134-158 4-28 (204)
244 1uf9_A TT1252 protein; P-loop, 96.2 0.0019 6.5E-08 56.5 2.6 22 134-155 8-29 (203)
245 3kl4_A SRP54, signal recogniti 96.2 0.00077 2.6E-08 67.3 0.0 40 134-178 97-136 (433)
246 1nks_A Adenylate kinase; therm 96.2 0.0019 6.7E-08 55.8 2.6 22 136-157 3-24 (194)
247 2wwf_A Thymidilate kinase, put 96.2 0.0022 7.7E-08 56.5 2.9 23 134-156 10-32 (212)
248 2z0h_A DTMP kinase, thymidylat 96.2 0.0023 7.7E-08 55.8 2.9 22 136-157 2-23 (197)
249 2ohf_A Protein OLA1, GTP-bindi 96.2 0.0022 7.4E-08 63.3 2.9 22 134-155 22-43 (396)
250 2c95_A Adenylate kinase 1; tra 96.1 0.0025 8.4E-08 55.5 2.8 23 134-156 9-31 (196)
251 1tev_A UMP-CMP kinase; ploop, 96.1 0.0025 8.7E-08 55.1 2.9 23 134-156 3-25 (196)
252 1ypw_A Transitional endoplasmi 96.1 0.0015 5.2E-08 70.3 1.7 25 132-156 236-260 (806)
253 2plr_A DTMP kinase, probable t 96.1 0.0026 8.7E-08 56.0 2.9 23 134-156 4-26 (213)
254 4ag6_A VIRB4 ATPase, type IV s 96.1 0.0017 5.9E-08 63.6 1.7 22 134-155 35-56 (392)
255 2bwj_A Adenylate kinase 5; pho 96.0 0.0031 1.1E-07 55.0 2.8 23 134-156 12-34 (199)
256 3ake_A Cytidylate kinase; CMP 96.0 0.0032 1.1E-07 55.3 2.9 20 136-155 4-23 (208)
257 1xjc_A MOBB protein homolog; s 96.0 0.0034 1.2E-07 54.5 3.0 23 135-157 5-27 (169)
258 3llm_A ATP-dependent RNA helic 96.0 0.0046 1.6E-07 56.0 4.0 22 134-155 76-97 (235)
259 3cf0_A Transitional endoplasmi 96.0 0.0034 1.1E-07 59.3 3.2 23 134-156 49-71 (301)
260 1mky_A Probable GTP-binding pr 95.9 0.0046 1.6E-07 61.6 4.2 22 136-157 182-203 (439)
261 2vli_A Antibiotic resistance p 95.9 0.003 1E-07 54.4 2.4 22 134-155 5-26 (183)
262 1nn5_A Similar to deoxythymidy 95.9 0.0035 1.2E-07 55.3 2.9 23 134-156 9-31 (215)
263 3lxx_A GTPase IMAP family memb 95.9 0.0027 9.3E-08 57.5 2.2 20 136-155 31-50 (239)
264 2qtf_A Protein HFLX, GTP-bindi 95.9 0.0032 1.1E-07 61.4 2.7 20 136-155 181-200 (364)
265 1njg_A DNA polymerase III subu 95.8 0.0062 2.1E-07 53.8 4.2 24 133-156 44-67 (250)
266 1e6c_A Shikimate kinase; phosp 95.8 0.0036 1.2E-07 53.3 2.5 21 135-155 3-23 (173)
267 2pbr_A DTMP kinase, thymidylat 95.8 0.004 1.4E-07 53.9 2.9 21 136-156 2-22 (195)
268 2r6a_A DNAB helicase, replicat 95.8 0.0035 1.2E-07 62.8 2.8 22 134-155 203-224 (454)
269 3fb4_A Adenylate kinase; psych 95.8 0.0041 1.4E-07 55.2 2.9 20 136-155 2-21 (216)
270 1qf9_A UMP/CMP kinase, protein 95.8 0.004 1.4E-07 53.7 2.7 22 134-155 6-27 (194)
271 2zr9_A Protein RECA, recombina 95.7 0.0021 7.3E-08 62.3 0.8 22 134-155 61-82 (349)
272 1zak_A Adenylate kinase; ATP:A 95.7 0.004 1.4E-07 55.7 2.5 25 134-158 5-29 (222)
273 2iyv_A Shikimate kinase, SK; t 95.7 0.0044 1.5E-07 53.5 2.7 23 134-156 2-24 (184)
274 1zd8_A GTP:AMP phosphotransfer 95.7 0.0046 1.6E-07 55.6 2.9 23 134-156 7-29 (227)
275 3k53_A Ferrous iron transport 95.7 0.0033 1.1E-07 58.3 1.9 20 136-155 5-24 (271)
276 1ukz_A Uridylate kinase; trans 95.7 0.0048 1.7E-07 54.2 2.9 23 134-156 15-37 (203)
277 3bos_A Putative DNA replicatio 95.7 0.0081 2.8E-07 53.5 4.4 22 134-155 52-73 (242)
278 2ce7_A Cell division protein F 95.7 0.0037 1.3E-07 63.1 2.3 21 137-157 52-72 (476)
279 3dl0_A Adenylate kinase; phosp 95.7 0.0049 1.7E-07 54.7 2.9 20 136-155 2-21 (216)
280 2pt5_A Shikimate kinase, SK; a 95.7 0.0051 1.7E-07 52.2 2.8 21 136-156 2-22 (168)
281 2cdn_A Adenylate kinase; phosp 95.7 0.006 2E-07 53.6 3.3 22 134-155 20-41 (201)
282 2qmh_A HPR kinase/phosphorylas 95.6 0.0077 2.6E-07 53.7 3.9 29 134-162 34-62 (205)
283 2ged_A SR-beta, signal recogni 95.6 0.0049 1.7E-07 53.2 2.6 21 135-155 49-69 (193)
284 1z2a_A RAS-related protein RAB 95.6 0.0055 1.9E-07 51.2 2.7 20 136-155 7-26 (168)
285 1a7j_A Phosphoribulokinase; tr 95.6 0.004 1.4E-07 58.7 1.9 23 134-156 5-27 (290)
286 1aky_A Adenylate kinase; ATP:A 95.6 0.0066 2.3E-07 54.2 3.3 23 134-156 4-26 (220)
287 2grj_A Dephospho-COA kinase; T 95.6 0.006 2E-07 53.9 2.9 23 134-156 12-34 (192)
288 1uj2_A Uridine-cytidine kinase 95.5 0.006 2E-07 55.9 2.9 23 134-156 22-44 (252)
289 2xb4_A Adenylate kinase; ATP-b 95.5 0.006 2.1E-07 54.8 2.8 21 136-156 2-22 (223)
290 2ius_A DNA translocase FTSK; n 95.5 0.0043 1.5E-07 63.1 2.0 22 134-155 167-188 (512)
291 1kao_A RAP2A; GTP-binding prot 95.5 0.0061 2.1E-07 50.7 2.6 20 136-155 5-24 (167)
292 3d3q_A TRNA delta(2)-isopenten 95.5 0.0076 2.6E-07 58.1 3.6 26 135-160 8-33 (340)
293 1zuh_A Shikimate kinase; alpha 95.5 0.0068 2.3E-07 51.5 3.0 22 134-155 7-28 (168)
294 3exa_A TRNA delta(2)-isopenten 95.5 0.0084 2.9E-07 57.2 3.8 28 134-161 3-30 (322)
295 2ce2_X GTPase HRAS; signaling 95.5 0.006 2E-07 50.6 2.4 19 137-155 6-24 (166)
296 1u8z_A RAS-related protein RAL 95.4 0.0067 2.3E-07 50.5 2.7 20 136-155 6-25 (168)
297 2dy1_A Elongation factor G; tr 95.4 0.0055 1.9E-07 64.5 2.5 33 134-170 9-42 (665)
298 2dyk_A GTP-binding protein; GT 95.4 0.0067 2.3E-07 50.4 2.6 20 136-155 3-22 (161)
299 1moz_A ARL1, ADP-ribosylation 95.4 0.005 1.7E-07 52.5 1.8 21 135-155 19-39 (183)
300 2nzj_A GTP-binding protein REM 95.4 0.0068 2.3E-07 51.1 2.6 20 136-155 6-25 (175)
301 1ek0_A Protein (GTP-binding pr 95.4 0.007 2.4E-07 50.6 2.7 19 137-155 6-24 (170)
302 3q72_A GTP-binding protein RAD 95.4 0.0061 2.1E-07 51.0 2.3 19 137-155 5-23 (166)
303 1z08_A RAS-related protein RAB 95.4 0.0069 2.3E-07 50.8 2.6 20 136-155 8-27 (170)
304 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.0071 2.4E-07 55.8 2.9 23 134-156 4-26 (260)
305 1c1y_A RAS-related protein RAP 95.4 0.0071 2.4E-07 50.4 2.7 19 137-155 6-24 (167)
306 1ky3_A GTP-binding protein YPT 95.4 0.007 2.4E-07 51.3 2.6 20 136-155 10-29 (182)
307 2erx_A GTP-binding protein DI- 95.4 0.0071 2.4E-07 50.6 2.6 20 136-155 5-24 (172)
308 3q85_A GTP-binding protein REM 95.4 0.0073 2.5E-07 50.7 2.7 19 137-155 5-23 (169)
309 2f6r_A COA synthase, bifunctio 95.4 0.0066 2.3E-07 56.8 2.6 22 134-155 75-96 (281)
310 2qag_A Septin-2, protein NEDD5 95.4 0.0058 2E-07 59.4 2.3 19 137-155 40-58 (361)
311 3crm_A TRNA delta(2)-isopenten 95.4 0.0092 3.1E-07 57.2 3.6 27 134-160 5-31 (323)
312 1z0j_A RAB-22, RAS-related pro 95.4 0.0073 2.5E-07 50.5 2.6 20 136-155 8-27 (170)
313 1wms_A RAB-9, RAB9, RAS-relate 95.3 0.0072 2.5E-07 51.1 2.6 20 136-155 9-28 (177)
314 3tw8_B RAS-related protein RAB 95.3 0.0071 2.4E-07 51.2 2.5 20 136-155 11-30 (181)
315 1g16_A RAS-related protein SEC 95.3 0.0071 2.4E-07 50.6 2.4 20 136-155 5-24 (170)
316 2w58_A DNAI, primosome compone 95.3 0.0088 3E-07 52.4 3.1 21 135-155 55-75 (202)
317 3b1v_A Ferrous iron uptake tra 95.3 0.0075 2.6E-07 56.3 2.7 21 135-155 4-24 (272)
318 3tlx_A Adenylate kinase 2; str 95.3 0.012 4.2E-07 53.6 4.1 23 134-156 29-51 (243)
319 2lkc_A Translation initiation 95.3 0.0079 2.7E-07 50.9 2.6 22 134-155 8-29 (178)
320 3a8t_A Adenylate isopentenyltr 95.3 0.012 4.2E-07 56.6 4.1 27 134-160 40-66 (339)
321 1jbk_A CLPB protein; beta barr 95.2 0.011 3.6E-07 50.4 3.3 23 134-156 43-65 (195)
322 1ltq_A Polynucleotide kinase; 95.2 0.0086 2.9E-07 56.0 2.9 23 134-156 2-24 (301)
323 2fn4_A P23, RAS-related protei 95.2 0.0081 2.8E-07 50.8 2.4 20 136-155 11-30 (181)
324 1r2q_A RAS-related protein RAB 95.2 0.0089 3.1E-07 49.9 2.7 20 136-155 8-27 (170)
325 1upt_A ARL1, ADP-ribosylation 95.2 0.009 3.1E-07 50.1 2.7 20 136-155 9-28 (171)
326 1svi_A GTP-binding protein YSX 95.2 0.008 2.7E-07 51.9 2.3 21 135-155 24-44 (195)
327 2qby_A CDC6 homolog 1, cell di 95.2 0.0087 3E-07 57.3 2.8 23 134-156 45-67 (386)
328 3foz_A TRNA delta(2)-isopenten 95.1 0.012 4E-07 56.1 3.6 28 134-161 10-37 (316)
329 3bc1_A RAS-related protein RAB 95.1 0.0092 3.1E-07 51.0 2.7 20 136-155 13-32 (195)
330 3pqc_A Probable GTP-binding pr 95.1 0.0083 2.8E-07 51.5 2.3 21 135-155 24-44 (195)
331 2oil_A CATX-8, RAS-related pro 95.1 0.0094 3.2E-07 51.5 2.7 20 136-155 27-46 (193)
332 2e87_A Hypothetical protein PH 95.1 0.0082 2.8E-07 58.1 2.5 22 134-155 167-188 (357)
333 2cxx_A Probable GTP-binding pr 95.1 0.0084 2.9E-07 51.3 2.3 19 137-155 4-22 (190)
334 3b9p_A CG5977-PA, isoform A; A 95.1 0.01 3.5E-07 55.3 3.1 25 134-158 54-78 (297)
335 4dsu_A GTPase KRAS, isoform 2B 95.1 0.0095 3.3E-07 50.8 2.6 19 137-155 7-25 (189)
336 1e4v_A Adenylate kinase; trans 95.1 0.0093 3.2E-07 53.0 2.7 21 136-156 2-22 (214)
337 2y8e_A RAB-protein 6, GH09086P 95.1 0.009 3.1E-07 50.4 2.4 20 136-155 16-35 (179)
338 1r8s_A ADP-ribosylation factor 95.1 0.0099 3.4E-07 49.6 2.7 19 137-155 3-21 (164)
339 3ihw_A Centg3; RAS, centaurin, 95.1 0.0095 3.3E-07 51.5 2.6 20 136-155 22-41 (184)
340 2hxs_A RAB-26, RAS-related pro 95.1 0.0099 3.4E-07 50.3 2.6 20 136-155 8-27 (178)
341 2a9k_A RAS-related protein RAL 95.1 0.01 3.4E-07 50.5 2.7 20 136-155 20-39 (187)
342 3clv_A RAB5 protein, putative; 95.0 0.01 3.4E-07 51.1 2.6 20 136-155 9-28 (208)
343 3zvl_A Bifunctional polynucleo 95.0 0.013 4.5E-07 58.0 3.8 23 134-156 258-280 (416)
344 4aby_A DNA repair protein RECN 95.0 0.23 7.9E-06 48.4 12.8 50 74-164 37-86 (415)
345 1fnn_A CDC6P, cell division co 95.0 0.012 4E-07 56.7 3.3 21 136-156 46-66 (389)
346 2g6b_A RAS-related protein RAB 95.0 0.011 3.7E-07 50.1 2.7 20 136-155 12-31 (180)
347 1z0f_A RAB14, member RAS oncog 95.0 0.011 3.8E-07 49.8 2.7 20 136-155 17-36 (179)
348 3con_A GTPase NRAS; structural 94.9 0.011 3.8E-07 50.8 2.7 20 136-155 23-42 (190)
349 2efe_B Small GTP-binding prote 94.9 0.011 3.8E-07 50.1 2.6 20 136-155 14-33 (181)
350 3cbq_A GTP-binding protein REM 94.9 0.011 3.8E-07 51.6 2.6 20 136-155 25-44 (195)
351 3kkq_A RAS-related protein M-R 94.9 0.012 4E-07 50.2 2.7 20 136-155 20-39 (183)
352 1v5w_A DMC1, meiotic recombina 94.9 0.012 4.3E-07 56.6 3.1 26 130-155 118-143 (343)
353 3iev_A GTP-binding protein ERA 94.9 0.01 3.4E-07 56.3 2.3 22 134-155 10-31 (308)
354 3be4_A Adenylate kinase; malar 94.9 0.013 4.4E-07 52.3 2.9 23 134-156 5-27 (217)
355 2bme_A RAB4A, RAS-related prot 94.9 0.011 3.9E-07 50.4 2.4 20 136-155 12-31 (186)
356 3lxw_A GTPase IMAP family memb 94.9 0.01 3.5E-07 54.3 2.3 20 136-155 23-42 (247)
357 4edh_A DTMP kinase, thymidylat 94.9 0.013 4.5E-07 52.6 2.9 23 134-156 6-28 (213)
358 1nrj_B SR-beta, signal recogni 94.8 0.012 4.1E-07 51.9 2.7 21 135-155 13-33 (218)
359 1wf3_A GTP-binding protein; GT 94.8 0.012 4.2E-07 55.6 2.9 21 135-155 8-28 (301)
360 2bov_A RAla, RAS-related prote 94.8 0.012 4.2E-07 51.1 2.7 20 136-155 16-35 (206)
361 1sxj_D Activator 1 41 kDa subu 94.8 0.02 6.9E-07 54.3 4.4 22 136-157 60-81 (353)
362 1mh1_A RAC1; GTP-binding, GTPa 94.8 0.013 4.3E-07 49.9 2.7 20 136-155 7-26 (186)
363 3v9p_A DTMP kinase, thymidylat 94.8 0.012 4.1E-07 53.4 2.6 25 134-158 25-49 (227)
364 1m7b_A RND3/RHOE small GTP-bin 94.8 0.012 4E-07 50.6 2.4 20 136-155 9-28 (184)
365 3t5g_A GTP-binding protein RHE 94.8 0.012 4.1E-07 50.1 2.4 20 136-155 8-27 (181)
366 3t1o_A Gliding protein MGLA; G 94.8 0.013 4.4E-07 50.3 2.7 20 136-155 16-35 (198)
367 3tkl_A RAS-related protein RAB 94.8 0.013 4.4E-07 50.5 2.7 20 136-155 18-37 (196)
368 1l8q_A Chromosomal replication 94.8 0.018 6.3E-07 54.4 3.9 23 134-156 37-59 (324)
369 3lv8_A DTMP kinase, thymidylat 94.8 0.014 4.7E-07 53.4 2.9 24 134-157 27-50 (236)
370 2gf9_A RAS-related protein RAB 94.8 0.013 4.6E-07 50.4 2.7 20 136-155 24-43 (189)
371 2wsm_A Hydrogenase expression/ 94.7 0.013 4.6E-07 51.8 2.6 23 134-156 30-52 (221)
372 1ksh_A ARF-like protein 2; sma 94.7 0.014 4.8E-07 49.9 2.7 20 136-155 20-39 (186)
373 3bwd_D RAC-like GTP-binding pr 94.7 0.014 4.9E-07 49.5 2.7 20 136-155 10-29 (182)
374 1ak2_A Adenylate kinase isoenz 94.7 0.017 6E-07 52.0 3.4 24 134-157 16-39 (233)
375 2p65_A Hypothetical protein PF 94.7 0.012 4.1E-07 50.0 2.1 23 134-156 43-65 (187)
376 1vg8_A RAS-related protein RAB 94.7 0.014 4.8E-07 50.8 2.6 20 136-155 10-29 (207)
377 2fg5_A RAB-22B, RAS-related pr 94.7 0.013 4.5E-07 50.7 2.4 20 136-155 25-44 (192)
378 2dby_A GTP-binding protein; GD 94.7 0.013 4.4E-07 57.2 2.6 19 137-155 4-22 (368)
379 4fcw_A Chaperone protein CLPB; 94.7 0.014 4.7E-07 54.6 2.7 21 135-155 48-68 (311)
380 2gf0_A GTP-binding protein DI- 94.7 0.013 4.6E-07 50.5 2.4 20 136-155 10-29 (199)
381 3h4m_A Proteasome-activating n 94.6 0.017 5.9E-07 53.3 3.3 25 134-158 51-75 (285)
382 2h92_A Cytidylate kinase; ross 94.6 0.015 5.1E-07 51.6 2.8 22 134-155 3-24 (219)
383 4tmk_A Protein (thymidylate ki 94.6 0.016 5.4E-07 52.1 2.9 23 134-156 3-25 (213)
384 1z06_A RAS-related protein RAB 94.6 0.015 5.1E-07 50.0 2.6 20 136-155 22-41 (189)
385 2a5j_A RAS-related protein RAB 94.6 0.015 5.2E-07 50.1 2.7 19 137-155 24-42 (191)
386 3t5d_A Septin-7; GTP-binding p 94.6 0.013 4.5E-07 54.3 2.3 20 136-155 10-29 (274)
387 2ew1_A RAS-related protein RAB 94.6 0.014 4.9E-07 51.3 2.4 20 136-155 28-47 (201)
388 3oes_A GTPase rhebl1; small GT 94.6 0.015 5E-07 50.8 2.4 20 136-155 26-45 (201)
389 2il1_A RAB12; G-protein, GDP, 94.5 0.015 5.3E-07 50.3 2.5 19 137-155 29-47 (192)
390 2h57_A ADP-ribosylation factor 94.5 0.014 4.8E-07 50.3 2.3 20 136-155 23-42 (190)
391 3dz8_A RAS-related protein RAB 94.5 0.015 5.2E-07 50.2 2.4 20 136-155 25-44 (191)
392 1zbd_A Rabphilin-3A; G protein 94.5 0.016 5.6E-07 50.3 2.7 20 136-155 10-29 (203)
393 2chg_A Replication factor C sm 94.5 0.03 1E-06 48.7 4.3 21 136-156 40-60 (226)
394 2o52_A RAS-related protein RAB 94.5 0.016 5.4E-07 50.7 2.4 20 136-155 27-46 (200)
395 3n70_A Transport activator; si 94.5 0.027 9.3E-07 46.8 3.8 23 133-155 23-45 (145)
396 2cjw_A GTP-binding protein GEM 94.5 0.017 5.8E-07 50.3 2.7 20 136-155 8-27 (192)
397 1zj6_A ADP-ribosylation factor 94.5 0.016 5.5E-07 49.8 2.4 20 136-155 18-37 (187)
398 3reg_A RHO-like small GTPase; 94.5 0.017 5.9E-07 49.9 2.7 20 136-155 25-44 (194)
399 3umf_A Adenylate kinase; rossm 94.5 0.022 7.5E-07 51.4 3.4 25 134-158 29-53 (217)
400 2atv_A RERG, RAS-like estrogen 94.5 0.017 5.9E-07 50.0 2.6 20 136-155 30-49 (196)
401 4dcu_A GTP-binding protein ENG 94.4 0.018 6.2E-07 57.6 3.1 23 134-156 23-45 (456)
402 1x3s_A RAS-related protein RAB 94.4 0.018 6.1E-07 49.5 2.7 20 136-155 17-36 (195)
403 4bas_A ADP-ribosylation factor 94.4 0.017 5.8E-07 49.8 2.5 21 135-155 18-38 (199)
404 3iby_A Ferrous iron transport 94.4 0.014 4.7E-07 53.9 2.0 21 136-156 3-23 (256)
405 1zd9_A ADP-ribosylation factor 94.4 0.018 6.1E-07 49.6 2.7 20 136-155 24-43 (188)
406 3cph_A RAS-related protein SEC 94.4 0.018 6.1E-07 50.4 2.7 20 136-155 22-41 (213)
407 2p5s_A RAS and EF-hand domain 94.4 0.018 6.3E-07 50.0 2.7 20 136-155 30-49 (199)
408 2fu5_C RAS-related protein RAB 94.4 0.013 4.4E-07 49.9 1.6 20 136-155 10-29 (183)
409 3tqf_A HPR(Ser) kinase; transf 94.4 0.02 6.8E-07 49.9 2.7 22 134-155 16-37 (181)
410 2bcg_Y Protein YP2, GTP-bindin 94.4 0.017 5.9E-07 50.4 2.4 20 136-155 10-29 (206)
411 2qu8_A Putative nucleolar GTP- 94.3 0.019 6.4E-07 51.3 2.7 21 135-155 30-50 (228)
412 4djt_A GTP-binding nuclear pro 94.3 0.014 4.9E-07 51.4 1.9 20 136-155 13-32 (218)
413 1gwn_A RHO-related GTP-binding 94.3 0.018 6.1E-07 50.8 2.4 20 136-155 30-49 (205)
414 2h17_A ADP-ribosylation factor 94.3 0.016 5.5E-07 49.5 2.0 20 136-155 23-42 (181)
415 3tmk_A Thymidylate kinase; pho 94.3 0.021 7.1E-07 51.5 2.8 25 134-158 5-29 (216)
416 2q3h_A RAS homolog gene family 94.3 0.02 6.8E-07 49.7 2.7 20 136-155 22-41 (201)
417 3c5c_A RAS-like protein 12; GD 94.3 0.02 6.8E-07 49.4 2.6 20 136-155 23-42 (187)
418 2ocp_A DGK, deoxyguanosine kin 94.3 0.02 6.7E-07 51.9 2.7 25 134-158 2-26 (241)
419 2iwr_A Centaurin gamma 1; ANK 94.3 0.015 5E-07 49.3 1.7 20 136-155 9-28 (178)
420 2xtp_A GTPase IMAP family memb 94.2 0.018 6.2E-07 52.6 2.4 21 135-155 23-43 (260)
421 2f7s_A C25KG, RAS-related prot 94.2 0.02 6.9E-07 50.4 2.6 20 136-155 27-46 (217)
422 1p5z_B DCK, deoxycytidine kina 94.2 0.02 6.7E-07 52.7 2.7 25 134-158 24-48 (263)
423 3eph_A TRNA isopentenyltransfe 94.2 0.021 7.2E-07 56.3 3.0 27 134-160 2-28 (409)
424 2z43_A DNA repair and recombin 94.2 0.019 6.5E-07 54.7 2.6 24 132-155 105-128 (324)
425 3ld9_A DTMP kinase, thymidylat 94.2 0.022 7.7E-07 51.5 2.9 24 134-157 21-44 (223)
426 2fv8_A H6, RHO-related GTP-bin 94.2 0.019 6.5E-07 50.3 2.4 21 135-155 26-46 (207)
427 2b6h_A ADP-ribosylation factor 94.2 0.019 6.4E-07 49.9 2.3 20 136-155 31-50 (192)
428 2hf9_A Probable hydrogenase ni 94.2 0.021 7.1E-07 50.7 2.7 23 134-156 38-60 (226)
429 2r62_A Cell division protease 94.2 0.011 3.7E-07 54.3 0.8 21 137-157 47-67 (268)
430 2j1l_A RHO-related GTP-binding 94.2 0.02 6.7E-07 50.7 2.4 20 136-155 36-55 (214)
431 2fh5_B SR-beta, signal recogni 94.2 0.022 7.4E-07 50.1 2.7 20 136-155 9-28 (214)
432 3bh0_A DNAB-like replicative h 94.2 0.022 7.4E-07 54.2 2.8 29 127-155 61-89 (315)
433 3a1s_A Iron(II) transport prot 94.1 0.019 6.3E-07 53.0 2.2 20 136-155 7-26 (258)
434 2qz4_A Paraplegin; AAA+, SPG7, 94.1 0.029 1E-06 50.9 3.5 24 134-157 39-62 (262)
435 2gco_A H9, RHO-related GTP-bin 94.1 0.021 7.2E-07 49.8 2.4 20 136-155 27-46 (201)
436 4dhe_A Probable GTP-binding pr 94.1 0.011 3.8E-07 52.3 0.6 21 135-155 30-50 (223)
437 2atx_A Small GTP binding prote 94.0 0.022 7.6E-07 49.1 2.4 20 136-155 20-39 (194)
438 3i8s_A Ferrous iron transport 94.0 0.019 6.6E-07 53.3 2.0 21 136-156 5-25 (274)
439 2x77_A ADP-ribosylation factor 94.0 0.019 6.5E-07 49.3 1.8 20 136-155 24-43 (189)
440 2z4s_A Chromosomal replication 94.0 0.023 7.9E-07 56.6 2.7 23 134-156 130-152 (440)
441 3p32_A Probable GTPase RV1496/ 93.9 0.041 1.4E-06 53.1 4.3 34 123-156 68-101 (355)
442 4gzl_A RAS-related C3 botulinu 93.9 0.024 8.2E-07 49.7 2.4 20 136-155 32-51 (204)
443 1jwy_B Dynamin A GTPase domain 93.9 0.021 7.1E-07 53.6 2.2 21 135-155 25-45 (315)
444 3llu_A RAS-related GTP-binding 93.9 0.024 8.3E-07 49.2 2.4 20 136-155 22-41 (196)
445 1jal_A YCHF protein; nucleotid 93.9 0.029 9.8E-07 54.6 3.1 22 134-155 2-23 (363)
446 3dm5_A SRP54, signal recogniti 93.9 0.015 5.2E-07 58.0 1.2 22 134-155 100-121 (443)
447 1ko7_A HPR kinase/phosphatase; 93.8 0.027 9.4E-07 53.6 2.8 22 134-155 144-165 (314)
448 1jr3_A DNA polymerase III subu 93.7 0.046 1.6E-06 52.3 4.2 37 122-158 26-62 (373)
449 1ypw_A Transitional endoplasmi 93.7 0.018 6E-07 62.0 1.4 23 134-156 511-533 (806)
450 3sr0_A Adenylate kinase; phosp 93.7 0.033 1.1E-06 49.7 2.9 23 136-158 2-24 (206)
451 2yc2_C IFT27, small RAB-relate 93.7 0.015 5.1E-07 50.5 0.6 20 136-155 22-41 (208)
452 2hup_A RAS-related protein RAB 93.6 0.028 9.7E-07 49.1 2.4 20 136-155 31-50 (201)
453 3gj0_A GTP-binding nuclear pro 93.6 0.024 8.3E-07 50.1 2.0 20 136-155 17-36 (221)
454 3q3j_B RHO-related GTP-binding 93.6 0.031 1.1E-06 49.4 2.7 20 136-155 29-48 (214)
455 3l0i_B RAS-related protein RAB 93.6 0.016 5.5E-07 50.4 0.7 20 136-155 35-54 (199)
456 4hlc_A DTMP kinase, thymidylat 93.6 0.035 1.2E-06 49.4 2.9 23 134-156 2-24 (205)
457 3cpj_B GTP-binding protein YPT 93.5 0.033 1.1E-06 49.4 2.6 20 136-155 15-34 (223)
458 2g3y_A GTP-binding protein GEM 93.5 0.033 1.1E-06 49.6 2.6 20 136-155 39-58 (211)
459 3def_A T7I23.11 protein; chlor 93.5 0.043 1.5E-06 50.4 3.5 20 136-155 38-57 (262)
460 1sky_E F1-ATPase, F1-ATP synth 93.4 0.035 1.2E-06 55.7 2.8 22 134-155 151-172 (473)
461 2v1u_A Cell division control p 93.4 0.034 1.2E-06 53.2 2.7 24 134-157 44-67 (387)
462 1tue_A Replication protein E1; 93.4 0.052 1.8E-06 48.6 3.6 25 134-158 58-82 (212)
463 2j0v_A RAC-like GTP-binding pr 93.4 0.034 1.2E-06 48.7 2.4 20 136-155 11-30 (212)
464 1h65_A Chloroplast outer envel 93.4 0.049 1.7E-06 50.2 3.6 20 136-155 41-60 (270)
465 2aka_B Dynamin-1; fusion prote 93.3 0.028 9.5E-07 52.2 1.9 21 135-155 27-47 (299)
466 3cnl_A YLQF, putative uncharac 93.3 0.034 1.2E-06 51.4 2.4 20 136-155 101-120 (262)
467 2i1q_A DNA repair and recombin 93.2 0.035 1.2E-06 52.6 2.4 22 134-155 98-119 (322)
468 2orw_A Thymidine kinase; TMTK, 93.1 0.046 1.6E-06 47.6 2.9 22 134-155 3-25 (184)
469 2qen_A Walker-type ATPase; unk 93.1 0.043 1.5E-06 51.7 2.9 24 134-157 31-54 (350)
470 3co5_A Putative two-component 93.1 0.047 1.6E-06 45.3 2.8 22 134-155 27-48 (143)
471 1d2n_A N-ethylmaleimide-sensit 93.1 0.042 1.4E-06 50.5 2.7 24 134-157 64-87 (272)
472 3hnw_A Uncharacterized protein 93.0 1.3 4.5E-05 36.7 11.5 71 304-380 64-136 (138)
473 3uk6_A RUVB-like 2; hexameric 92.9 0.079 2.7E-06 50.7 4.4 24 134-157 70-93 (368)
474 2v3c_C SRP54, signal recogniti 92.9 0.043 1.5E-06 54.6 2.6 23 134-156 99-121 (432)
475 3pfi_A Holliday junction ATP-d 92.8 0.078 2.7E-06 50.1 4.3 24 135-158 56-79 (338)
476 3kta_A Chromosome segregation 92.8 0.026 8.9E-07 48.4 0.8 24 159-182 29-52 (182)
477 3syl_A Protein CBBX; photosynt 92.8 0.052 1.8E-06 50.6 2.9 23 134-156 67-89 (309)
478 2bjv_A PSP operon transcriptio 92.6 0.074 2.5E-06 48.6 3.7 22 134-155 29-50 (265)
479 3th5_A RAS-related C3 botulinu 91.8 0.021 7.3E-07 49.7 0.0 20 136-155 32-51 (204)
480 4a1f_A DNAB helicase, replicat 92.5 0.085 2.9E-06 50.7 4.1 29 127-155 39-67 (338)
481 3hws_A ATP-dependent CLP prote 92.5 0.055 1.9E-06 52.1 2.8 24 134-157 51-74 (363)
482 1ofh_A ATP-dependent HSL prote 92.5 0.062 2.1E-06 49.8 3.0 24 134-157 50-73 (310)
483 3t15_A Ribulose bisphosphate c 92.4 0.067 2.3E-06 50.1 3.1 24 134-157 36-59 (293)
484 1sxj_B Activator 1 37 kDa subu 92.4 0.1 3.5E-06 48.6 4.4 21 137-157 45-65 (323)
485 1hqc_A RUVB; extended AAA-ATPa 92.3 0.072 2.5E-06 49.9 3.3 24 134-157 38-61 (324)
486 2zts_A Putative uncharacterize 92.3 0.064 2.2E-06 48.0 2.8 22 134-155 30-51 (251)
487 3ec1_A YQEH GTPase; atnos1, at 92.3 0.083 2.8E-06 51.3 3.8 24 134-157 162-185 (369)
488 1xwi_A SKD1 protein; VPS4B, AA 92.3 0.068 2.3E-06 50.8 3.1 25 134-158 45-69 (322)
489 3qkt_A DNA double-strand break 92.3 0.031 1.1E-06 53.6 0.6 45 75-156 1-45 (339)
490 3eie_A Vacuolar protein sortin 92.2 0.06 2E-06 51.0 2.6 24 134-157 51-74 (322)
491 2q6t_A DNAB replication FORK h 92.2 0.093 3.2E-06 52.2 4.1 32 124-155 190-221 (444)
492 2qgz_A Helicase loader, putati 92.2 0.072 2.5E-06 50.4 3.1 22 134-155 152-173 (308)
493 3gmt_A Adenylate kinase; ssgci 92.1 0.067 2.3E-06 48.6 2.6 21 136-156 10-30 (230)
494 3d8b_A Fidgetin-like protein 1 92.1 0.082 2.8E-06 50.9 3.4 25 134-158 117-141 (357)
495 2qby_B CDC6 homolog 3, cell di 92.1 0.076 2.6E-06 50.9 3.1 24 134-157 45-68 (384)
496 1u94_A RECA protein, recombina 92.0 0.071 2.4E-06 51.6 2.8 22 134-155 63-84 (356)
497 3pvs_A Replication-associated 92.0 0.095 3.2E-06 52.3 3.8 23 136-158 52-74 (447)
498 2fna_A Conserved hypothetical 91.9 0.12 4E-06 48.7 4.2 22 135-156 31-52 (357)
499 1zcb_A G alpha I/13; GTP-bindi 91.9 0.069 2.3E-06 51.9 2.6 21 135-155 34-54 (362)
500 2chq_A Replication factor C sm 91.8 0.11 3.7E-06 48.3 3.8 22 136-157 40-61 (319)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3.1e-36 Score=295.81 Aligned_cols=206 Identities=13% Similarity=0.180 Sum_probs=152.0
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ |+|++... ...+|+||||+|++ |++++|+||||||||||+|
T Consensus 23 ~mi~v~~ls----~~y~~~~~----~~~aL~~vsl~i~~----------------------Gei~~IiGpnGaGKSTLlr 72 (366)
T 3tui_C 23 HMIKLSNIT----KVFHQGTR----TIQALNNVSLHVPA----------------------GQIYGVIGASGAGKSTLIR 72 (366)
T ss_dssp CCEEEEEEE----EEEECSSS----EEEEEEEEEEEECT----------------------TCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEeEE----EEeCCCCC----CeEEEEeeEEEEcC----------------------CCEEEEEcCCCchHHHHHH
Confidence 467888888 88964210 00135599999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccc-hhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCc
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRA-SKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGT 231 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~-~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~ 231 (388)
+|+ |++ ++.+|++.++|..+.-+.... ...| ++++|+||++.+++.+++.++..+.....+............
T Consensus 73 ~i~----GL~-~p~~G~I~i~G~~i~~~~~~~~~~~r-~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~ 146 (366)
T 3tui_C 73 CVN----LLE-RPTEGSVLVDGQELTTLSESELTKAR-RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTE 146 (366)
T ss_dssp HHH----TSS-CCSEEEEEETTEECSSCCHHHHHHHH-TTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHh----cCC-CCCceEEEECCEECCcCCHHHHHHHh-CcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 999 998 778999988887654332211 1223 569999999999888887765433222222211111000011
Q ss_pred eEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHH
Q psy14062 232 DLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLV 306 (388)
Q Consensus 232 ~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~v 306 (388)
.+...++....++++..|||||+||+.||+||+. +|++|||||||++| ..+.+++++++++...+|+++
T Consensus 147 lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~------~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~v 220 (366)
T 3tui_C 147 LLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS------NPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLI 220 (366)
T ss_dssp HHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTT------CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred HHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhc------CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2223334445678899999999999999999999 99999999999999 778889988877633459999
Q ss_pred HHhHHHHHHHHHHH
Q psy14062 307 ETDLKALEPELRKA 320 (388)
Q Consensus 307 tH~l~~l~~~~d~~ 320 (388)
||+++.+.++||++
T Consensus 221 THdl~~~~~~aDrv 234 (366)
T 3tui_C 221 THEMDVVKRICDCV 234 (366)
T ss_dssp ESCHHHHHHHCSEE
T ss_pred ecCHHHHHHhCCEE
Confidence 99999999999875
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.98 E-value=1.5e-35 Score=290.78 Aligned_cols=200 Identities=16% Similarity=0.165 Sum_probs=150.5
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ |+|++..+|+ ||||+|.+ |++++|+||||||||||||+
T Consensus 4 ~l~i~~ls----~~y~~~~~L~--------~vsl~i~~----------------------Ge~~~llGpsGsGKSTLLr~ 49 (359)
T 3fvq_A 4 ALHIGHLS----KSFQNTPVLN--------DISLSLDP----------------------GEILFIIGASGCGKTTLLRC 49 (359)
T ss_dssp CEEEEEEE----EEETTEEEEE--------EEEEEECT----------------------TCEEEEEESTTSSHHHHHHH
T ss_pred EEEEEeEE----EEECCEEEEE--------eeEEEEcC----------------------CCEEEEECCCCchHHHHHHH
Confidence 57788888 8999888765 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cccCCce
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EIIPGTD 232 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~~~~ 232 (388)
|+ |++ ++.+|++.++|..++-..... ..+.+.++|+||++.++|.+++.++..+............ ..+ ...
T Consensus 50 ia----Gl~-~p~~G~I~i~G~~i~~~~~~~-~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v-~~~ 122 (359)
T 3fvq_A 50 LA----GFE-QPDSGEISLSGKTIFSKNTNL-PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRI-EAM 122 (359)
T ss_dssp HH----TSS-CCSEEEEEETTEEEESSSCBC-CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHH-HHH
T ss_pred Hh----cCC-CCCCcEEEECCEECccccccc-chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHH-HHH
Confidence 99 999 778999988887653211111 1234579999999999999888765433211111111111 111 112
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++....++++..|||||+||++||+||+. +|++||||||+++| +++...+.++.++...++++||
T Consensus 123 l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~------~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vT 196 (359)
T 3fvq_A 123 LELTGISELAGRYPHELSGGQQQRAALARALAP------DPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVS 196 (359)
T ss_dssp HHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTT------CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 233344455688999999999999999999999 99999999999999 5666666666554334599999
Q ss_pred HhHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKA 320 (388)
Q Consensus 308 H~l~~l~~~~d~~ 320 (388)
||++++...||++
T Consensus 197 Hd~~ea~~~aDri 209 (359)
T 3fvq_A 197 HDREEALQYADRI 209 (359)
T ss_dssp CCHHHHHHHCSEE
T ss_pred CCHHHHHHHCCEE
Confidence 9999999998875
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.97 E-value=6.2e-35 Score=288.20 Aligned_cols=197 Identities=13% Similarity=0.121 Sum_probs=150.9
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.+++ |+|++..+|+ ||||+|++ |++++|+||||||||||||+
T Consensus 3 ~l~~~~l~----~~yg~~~~L~--------~vsl~i~~----------------------Ge~~~llGpsGsGKSTLLr~ 48 (381)
T 3rlf_A 3 SVQLQNVT----KAWGEVVVSK--------DINLDIHE----------------------GEFVVFVGPSGCGKSTLLRM 48 (381)
T ss_dssp CEEEEEEE----EEETTEEEEE--------EEEEEECT----------------------TCEEEEECCTTSSHHHHHHH
T ss_pred EEEEEeEE----EEECCEEEEe--------eeEEEECC----------------------CCEEEEEcCCCchHHHHHHH
Confidence 46777777 8999887765 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceE
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l 233 (388)
|+ |++ ++.+|++.+.|..+... . ...+.+++|||++.++|.+++.++..+.....+.............+
T Consensus 49 ia----Gl~-~p~~G~I~i~G~~~~~~--~---~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l 118 (381)
T 3rlf_A 49 IA----GLE-TITSGDLFIGEKRMNDT--P---PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 118 (381)
T ss_dssp HH----TSS-CCSEEEEEETTEECTTC--C---GGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHH
T ss_pred HH----cCC-CCCCeEEEECCEECCCC--C---HHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99 999 77899988887655321 1 12356999999999999988876544322222221111000001122
Q ss_pred EEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 234 ~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH 308 (388)
...++....++++..|||||+||++||++|+. +|++|||||||++| +++...++++.++...++++|||
T Consensus 119 ~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~------~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTH 192 (381)
T 3rlf_A 119 EVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA------EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192 (381)
T ss_dssp HHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHH------CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS
T ss_pred HHcCCchhhcCChhHCCHHHHHHHHHHHHHHc------CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 22233445678899999999999999999999 99999999999999 67778888887664446999999
Q ss_pred hHHHHHHHHHHH
Q psy14062 309 DLKALEPELRKA 320 (388)
Q Consensus 309 ~l~~l~~~~d~~ 320 (388)
|++++...||++
T Consensus 193 d~~ea~~~aDri 204 (381)
T 3rlf_A 193 DQVEAMTLADKI 204 (381)
T ss_dssp CHHHHHHHCSEE
T ss_pred CHHHHHHhCCEE
Confidence 999999998875
No 4
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.97 E-value=5e-35 Score=276.54 Aligned_cols=199 Identities=13% Similarity=0.162 Sum_probs=147.6
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|+++.+|+ ||||+|++ |++++|+||||||||||+++
T Consensus 24 ~l~i~~l~----~~y~~~~vL~--------~vsl~i~~----------------------Gei~~liG~NGsGKSTLlk~ 69 (263)
T 2olj_A 24 MIDVHQLK----KSFGSLEVLK--------GINVHIRE----------------------GEVVVVIGPSGSGKSTFLRC 69 (263)
T ss_dssp SEEEEEEE----EEETTEEEEE--------EEEEEECT----------------------TCEEEEECCTTSSHHHHHHH
T ss_pred eEEEEeEE----EEECCEEEEE--------eeEEEEcC----------------------CCEEEEEcCCCCcHHHHHHH
Confidence 56777777 7898877765 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCc-cchhhhhccceeEecccCCCCCcceEEEEEEec-cccCCCCcc-ccccCC
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFA-QIIDKPNEE-YEIIPG 230 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~-~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~-~~~~~~~~~-~~~~~~ 230 (388)
|+ |++ ++.+|++.+.|..+. ... ..... ++.++|+||++..++.+++.++..+.. ...+..... ...+.
T Consensus 70 l~----Gl~-~p~~G~I~~~g~~i~-~~~~~~~~~-~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~- 141 (263)
T 2olj_A 70 LN----LLE-DFDEGEIIIDGINLK-AKDTNLNKV-REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAM- 141 (263)
T ss_dssp HT----TSS-CCSEEEEEETTEESS-STTCCHHHH-HHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHH-
T ss_pred HH----cCC-CCCCcEEEECCEECC-CccccHHHH-hCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH-
Confidence 99 998 778999988876543 111 11223 346999999988888777665443211 111111110 00110
Q ss_pred ceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 231 TDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 231 ~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
..+...++....++++..|||||+||+.||++|+. +|++|||||||++| +.+.+.+.++++++. +|++
T Consensus 142 ~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~------~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~-tvi~ 214 (263)
T 2olj_A 142 ELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAM------EPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGM-TMVV 214 (263)
T ss_dssp HHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT------CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTC-EEEE
T ss_pred HHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHC------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCC-EEEE
Confidence 11222223334578899999999999999999999 99999999999999 778888888876654 5999
Q ss_pred HHHhHHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKAV 321 (388)
Q Consensus 306 vtH~l~~l~~~~d~~~ 321 (388)
+||+++.+.+.||++.
T Consensus 215 vtHd~~~~~~~~d~v~ 230 (263)
T 2olj_A 215 VTHEMGFAREVGDRVL 230 (263)
T ss_dssp ECSCHHHHHHHCSEEE
T ss_pred EcCCHHHHHHhCCEEE
Confidence 9999999999988753
No 5
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.97 E-value=6.8e-35 Score=269.49 Aligned_cols=198 Identities=20% Similarity=0.177 Sum_probs=143.2
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|++..+|+ ||||+|++ |++++|+||||||||||+++
T Consensus 4 ~l~~~~l~----~~y~~~~~l~--------~vsl~i~~----------------------Ge~~~iiG~nGsGKSTLl~~ 49 (224)
T 2pcj_A 4 ILRAENIK----KVIRGYEILK--------GISLSVKK----------------------GEFVSIIGASGSGKSTLLYI 49 (224)
T ss_dssp EEEEEEEE----EEETTEEEEE--------EEEEEEET----------------------TCEEEEEECTTSCHHHHHHH
T ss_pred EEEEEeEE----EEECCEeeEe--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 46667777 7898877765 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCcc-chhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCCc
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGT 231 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~-~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~ 231 (388)
|+ |++ ++.+|++.+.|..+...... ....|++.++++||++..++..++.++..+.....+..... ...+. .
T Consensus 50 l~----Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-~ 123 (224)
T 2pcj_A 50 LG----LLD-APTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGE-Y 123 (224)
T ss_dssp HT----TSS-CCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHH-H
T ss_pred Hh----cCC-CCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHH-H
Confidence 99 998 77899988877654321111 11234457999999988887777665443221111111010 00000 1
Q ss_pred eEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHH
Q psy14062 232 DLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLV 306 (388)
Q Consensus 232 ~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~v 306 (388)
.+...++....++++..|||||+||+.||++|+. +|+++||||||++| +.+.+.+.++++++. +++++
T Consensus 124 ~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~------~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~-tvi~v 196 (224)
T 2pcj_A 124 LLSELGLGDKLSRKPYELSGGEQQRVAIARALAN------EPILLFADEPTGNLDSANTKRVMDIFLKINEGGT-SIVMV 196 (224)
T ss_dssp HHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTT------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC-EEEEE
T ss_pred HHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEE
Confidence 1111222334567899999999999999999999 99999999999999 777888888876654 59999
Q ss_pred HHhHHHHHHHHHH
Q psy14062 307 ETDLKALEPELRK 319 (388)
Q Consensus 307 tH~l~~l~~~~d~ 319 (388)
||+++.+ ..||+
T Consensus 197 tHd~~~~-~~~d~ 208 (224)
T 2pcj_A 197 THERELA-ELTHR 208 (224)
T ss_dssp CSCHHHH-TTSSE
T ss_pred cCCHHHH-HhCCE
Confidence 9999876 56664
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.97 E-value=1.6e-34 Score=273.15 Aligned_cols=201 Identities=14% Similarity=0.168 Sum_probs=147.6
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|++..+|+ ||||+|++ |++++|+||||||||||++
T Consensus 5 ~~l~i~~l~----~~y~~~~vl~--------~vsl~i~~----------------------Ge~~~liG~nGsGKSTLlk 50 (262)
T 1b0u_A 5 NKLHVIDLH----KRYGGHEVLK--------GVSLQARA----------------------GDVISIIGSSGSGKSTFLR 50 (262)
T ss_dssp CCEEEEEEE----EEETTEEEEE--------EEEEEECT----------------------TCEEEEECCTTSSHHHHHH
T ss_pred ceEEEeeEE----EEECCEEEEE--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 357777787 8898877765 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhh----------cCcc-chhhhhccceeEecccCCCCCcceEEEEEEec-cccCC
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFV----------FGYR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFA-QIIDK 220 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~v----------lg~~-~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~-~~~~~ 220 (388)
+|+ |++ ++.+|++.+.|..+.. .... .... ++.++++||++..++.+++.++..+.. ...+.
T Consensus 51 ~l~----Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~ 124 (262)
T 1b0u_A 51 CIN----FLE-KPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLL-RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 124 (262)
T ss_dssp HHT----TSS-CCSEEEEEETTEECCEEECTTSSEEESCHHHHHHH-HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCC
T ss_pred HHh----cCC-CCCCcEEEECCEEccccccccccccccChhhHHHH-hcceEEEecCcccCCCCcHHHHHHhhHHHhcCC
Confidence 999 998 7789998887765420 0000 0112 356999999988888777765443211 11111
Q ss_pred CCcc-ccccCCceEEEEEEeee-CCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhH
Q psy14062 221 PNEE-YEIIPGTDLEIARTAFY-DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYD 293 (388)
Q Consensus 221 ~~~~-~~~~~~~~l~~~r~~~~-~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~ 293 (388)
.... ...+. ..+...++... .++++..|||||+||+.||++|+. +|++|||||||++| +.+.+.+.
T Consensus 125 ~~~~~~~~~~-~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~------~p~lllLDEPts~LD~~~~~~~~~~l~ 197 (262)
T 1b0u_A 125 SKHDARERAL-KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAM------EPDVLLFDEPTSALDPELVGEVLRIMQ 197 (262)
T ss_dssp CHHHHHHHHH-HHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHT------CCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhc------CCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 1110 00110 11222233334 567899999999999999999999 99999999999999 77888888
Q ss_pred HHHHHhhhHHHHHHHhHHHHHHHHHHHH
Q psy14062 294 EERTEKLTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 294 el~~e~~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
++++++. +|+++||+++.+...||++.
T Consensus 198 ~l~~~g~-tvi~vtHd~~~~~~~~d~v~ 224 (262)
T 1b0u_A 198 QLAEEGK-TMVVVTHEMGFARHVSSHVI 224 (262)
T ss_dssp HHHHTTC-CEEEECSCHHHHHHHCSEEE
T ss_pred HHHhCCC-EEEEEeCCHHHHHHhCCEEE
Confidence 8876654 59999999999999988753
No 7
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.97 E-value=1.2e-34 Score=269.88 Aligned_cols=199 Identities=16% Similarity=0.205 Sum_probs=141.0
Q ss_pred EEEEEEEeeceEEecC----ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 75 LIITKIVAFNFKSYAG----YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 75 l~i~~l~~~~fksy~~----~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
+.+.+++ ++|++ ..+ |+||||+|++ |++++|+||||||||||
T Consensus 2 l~~~~l~----~~y~~~~~~~~~--------L~~isl~i~~----------------------Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 2 VKLKNVT----KTYKMGEEIIYA--------LKNVNLNIKE----------------------GEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp EEEEEEE----EEEEETTEEEEE--------EEEEEEEECT----------------------TCEEEEECSTTSSHHHH
T ss_pred EEEEEEE----EEeCCCCcceee--------EEeeeEEEcC----------------------CCEEEEECCCCCcHHHH
Confidence 4566666 77863 234 4599999999 99999999999999999
Q ss_pred HhhhhhcccEEEcCCCCCcceeehhhhhhcCcc-chhhhhccceeEecccCCCCCcceEEEEEEecccc---CCCCcc-c
Q psy14062 151 IDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQII---DKPNEE-Y 225 (388)
Q Consensus 151 l~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~-~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~---~~~~~~-~ 225 (388)
+++|+ |++ ++.+|++.+.|..+...... ....|++.++++||++.+++.+++.++........ ...... .
T Consensus 48 l~~l~----Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~ 122 (235)
T 3tif_A 48 LNIIG----CLD-KPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERR 122 (235)
T ss_dssp HHHHT----TSS-CCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHH
T ss_pred HHHHh----cCC-CCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHH
Confidence 99999 999 77899988887655422221 12234556999999999888877765432211111 011000 0
Q ss_pred cccCCceEEEEEEee-eCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 226 EIIPGTDLEIARTAF-YDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 226 ~~~~~~~l~~~r~~~-~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
..+. ..+....+.. ..++++..|||||+||++||++|+. +|++|||||||++| +.+...+.+++++.
T Consensus 123 ~~~~-~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~ 195 (235)
T 3tif_A 123 KRAL-ECLKMAELEERFANHKPNQLSGGQQQRVAIARALAN------NPPIILADQPTWALDSKTGEKIMQLLKKLNEED 195 (235)
T ss_dssp HHHH-HHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTT------CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 0000 1111112222 2367899999999999999999999 99999999999999 77888888887663
Q ss_pred hhHHHHHHHhHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~ 320 (388)
..+++++||+++.+ +.||++
T Consensus 196 g~tvi~vtHd~~~~-~~~d~i 215 (235)
T 3tif_A 196 GKTVVVVTHDINVA-RFGERI 215 (235)
T ss_dssp CCEEEEECSCHHHH-TTSSEE
T ss_pred CCEEEEEcCCHHHH-HhCCEE
Confidence 34599999999854 566654
No 8
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=6.5e-34 Score=265.60 Aligned_cols=199 Identities=15% Similarity=0.149 Sum_probs=146.3
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|+++.+|+ ||||+|++ |++++|+||||||||||++
T Consensus 5 ~~l~~~~l~----~~y~~~~vl~--------~vsl~i~~----------------------Ge~~~l~G~nGsGKSTLl~ 50 (240)
T 1ji0_A 5 IVLEVQSLH----VYYGAIHAIK--------GIDLKVPR----------------------GQIVTLIGANGAGKTTTLS 50 (240)
T ss_dssp EEEEEEEEE----EEETTEEEEE--------EEEEEEET----------------------TCEEEEECSTTSSHHHHHH
T ss_pred ceEEEEeEE----EEECCeeEEe--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 356677777 7898877765 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCCc
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGT 231 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~ 231 (388)
+|+ |++ ++.+|++.+.|..+.. ......+++.++|+||++..++.+++.++..+.. ........ ..... .
T Consensus 51 ~l~----Gl~-~p~~G~i~~~g~~~~~--~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~-~~~~~~~~~~~~~~-~ 121 (240)
T 1ji0_A 51 AIA----GLV-RAQKGKIIFNGQDITN--KPAHVINRMGIALVPEGRRIFPELTVYENLMMGA-YNRKDKEGIKRDLE-W 121 (240)
T ss_dssp HHT----TSS-CCSEEEEEETTEECTT--CCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGG-TTCCCSSHHHHHHH-H
T ss_pred HHh----CCC-CCCCceEEECCEECCC--CCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhh-hcCCCHHHHHHHHH-H
Confidence 999 998 7789998887765421 1112233445999999998888777765443221 01111111 01111 1
Q ss_pred eEEEE-EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 232 DLEIA-RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 232 ~l~~~-r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
.+... .+....++++..|||||+||+.||++|+. +|++|||||||++| +.+.+.+.++++++. ++++
T Consensus 122 ~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~------~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~-tvi~ 194 (240)
T 1ji0_A 122 IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS------RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGT-TILL 194 (240)
T ss_dssp HHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTT------CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTC-CEEE
T ss_pred HHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHc------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCC-EEEE
Confidence 11112 12234567889999999999999999999 99999999999999 777888888876554 5999
Q ss_pred HHHhHHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKAV 321 (388)
Q Consensus 306 vtH~l~~l~~~~d~~~ 321 (388)
+||+++.+.+.||++.
T Consensus 195 vtHd~~~~~~~~d~v~ 210 (240)
T 1ji0_A 195 VEQNALGALKVAHYGY 210 (240)
T ss_dssp EESCHHHHHHHCSEEE
T ss_pred EecCHHHHHHhCCEEE
Confidence 9999999999988753
No 9
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.97 E-value=1.3e-33 Score=267.41 Aligned_cols=205 Identities=17% Similarity=0.178 Sum_probs=149.4
Q ss_pred CcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+++.+.+++ ++|++..+|+ ||||+|.+ |++++|+||||||||||++
T Consensus 10 ~~l~~~~l~----~~~~~~~vL~--------~vsl~i~~----------------------Ge~~~liG~nGsGKSTLl~ 55 (266)
T 4g1u_C 10 ALLEASHLH----YHVQQQALIN--------DVSLHIAS----------------------GEMVAIIGPNGAGKSTLLR 55 (266)
T ss_dssp CEEEEEEEE----EEETTEEEEE--------EEEEEEET----------------------TCEEEEECCTTSCHHHHHH
T ss_pred ceEEEEeEE----EEeCCeeEEE--------eeEEEEcC----------------------CCEEEEECCCCCcHHHHHH
Confidence 367777777 8899888765 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCce
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~ 232 (388)
+|+ |++ ++.+|++.+.|..+.-. ... .+++.+++++|.+..++..++.++..+....+.. ......+. ..
T Consensus 56 ~l~----Gl~-~p~~G~I~~~g~~~~~~--~~~-~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~-~~ 125 (266)
T 4g1u_C 56 LLT----GYL-SPSHGECHLLGQNLNSW--QPK-ALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGG-SQDRQALQ-QV 125 (266)
T ss_dssp HHT----SSS-CCSSCEEEETTEETTTS--CHH-HHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCS-TTHHHHHH-HH
T ss_pred HHh----cCC-CCCCcEEEECCEECCcC--CHH-HHhheEEEEecCCccCCCCCHHHHHHhhhhhcCc-HHHHHHHH-HH
Confidence 999 999 77899988887655321 112 2334689999998877766665543322111111 11011100 11
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++....++.+..|||||+||+.||++|+..+-...+|++|||||||++| .++.+.++++++++..+++++|
T Consensus 126 l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vt 205 (266)
T 4g1u_C 126 MAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVL 205 (266)
T ss_dssp HHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEEC
T ss_pred HHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 11122233456788999999999999999999633233369999999999999 7788888888776544599999
Q ss_pred HhHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAV 321 (388)
Q Consensus 308 H~l~~l~~~~d~~~ 321 (388)
|+++.+.++||++.
T Consensus 206 Hdl~~~~~~~d~v~ 219 (266)
T 4g1u_C 206 HDLNLAALYADRIM 219 (266)
T ss_dssp SCHHHHHHHCSEEE
T ss_pred cCHHHHHHhCCEEE
Confidence 99999999988753
No 10
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.97 E-value=7.5e-35 Score=276.98 Aligned_cols=199 Identities=18% Similarity=0.189 Sum_probs=142.3
Q ss_pred cEEEEEEEeeceEEecCc-eeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSYAGY-VTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~-~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
++.+.+++ ++|++. .+|+ ||||+|++ |++++|+||||||||||++
T Consensus 7 ~l~i~~ls----~~y~~~~~~L~--------~isl~i~~----------------------Ge~~~iiGpnGsGKSTLl~ 52 (275)
T 3gfo_A 7 ILKVEELN----YNYSDGTHALK--------GINMNIKR----------------------GEVTAILGGNGVGKSTLFQ 52 (275)
T ss_dssp EEEEEEEE----EECTTSCEEEE--------EEEEEEET----------------------TSEEEEECCTTSSHHHHHH
T ss_pred EEEEEEEE----EEECCCCeEEE--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 56677777 789754 3654 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccC-CCCCcceEEEEEEeccccCCCCcc-ccccCC
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD-QVGGVSRCSVAIHFAQIIDKPNEE-YEIIPG 230 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~-~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~ 230 (388)
+|+ |++ ++.+|++.+.|..+.........+ ++.++++||++. .++..++.++..+.....+..... ...+.
T Consensus 53 ~l~----Gl~-~p~~G~I~~~G~~i~~~~~~~~~~-~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~- 125 (275)
T 3gfo_A 53 NFN----GIL-KPSSGRILFDNKPIDYSRKGIMKL-RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD- 125 (275)
T ss_dssp HHT----TSS-CCSEEEEEETTEECCCSHHHHHHH-HHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHH-
T ss_pred HHH----cCC-CCCCeEEEECCEECCcccccHHHH-hCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHH-
Confidence 999 998 778999888876552100111123 356999999874 334555554332211111111111 00010
Q ss_pred ceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHH-HHhhhHHH
Q psy14062 231 TDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEER-TEKLTRVQ 304 (388)
Q Consensus 231 ~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~-~e~~~~ii 304 (388)
..+...++....++++..|||||+||++||++|+. +|++|||||||++| ..+.+.+++++ +++. +|+
T Consensus 126 ~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~------~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~-tvi 198 (275)
T 3gfo_A 126 NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM------EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI-TII 198 (275)
T ss_dssp HHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTT------CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCC-EEE
T ss_pred HHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHc------CCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCC-EEE
Confidence 11222233345678899999999999999999999 99999999999999 77888888887 4444 599
Q ss_pred HHHHhHHHHHHHHHHH
Q psy14062 305 LVETDLKALEPELRKA 320 (388)
Q Consensus 305 ~vtH~l~~l~~~~d~~ 320 (388)
++||+++.+.++||++
T Consensus 199 ~vtHdl~~~~~~~drv 214 (275)
T 3gfo_A 199 IATHDIDIVPLYCDNV 214 (275)
T ss_dssp EEESCCSSGGGGCSEE
T ss_pred EEecCHHHHHHhCCEE
Confidence 9999999999988875
No 11
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.97 E-value=6.4e-34 Score=279.67 Aligned_cols=196 Identities=12% Similarity=0.140 Sum_probs=148.3
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ |+|++..+|+ ||||+|++ |++++|+||||||||||||+
T Consensus 3 ~l~~~~l~----~~y~~~~vl~--------~vsl~i~~----------------------Ge~~~llGpnGsGKSTLLr~ 48 (359)
T 2yyz_A 3 SIRVVNLK----KYFGKVKAVD--------GVSFEVKD----------------------GEFVALLGPSGCGKTTTLLM 48 (359)
T ss_dssp CEEEEEEE----EEETTEEEEE--------EEEEEECT----------------------TCEEEEECSTTSSHHHHHHH
T ss_pred EEEEEEEE----EEECCEEEEe--------eeEEEEcC----------------------CCEEEEEcCCCchHHHHHHH
Confidence 46677777 8898877765 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCCce
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGTD 232 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~~ 232 (388)
|+ |++ ++.+|++.++|..+... . ...+.++|+||++.+++.+++.++..+.....+..... ...+. ..
T Consensus 49 ia----Gl~-~p~~G~I~i~g~~i~~~--~---~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~-~~ 117 (359)
T 2yyz_A 49 LA----GIY-KPTSGEIYFDDVLVNDI--P---PKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVV-EI 117 (359)
T ss_dssp HH----TSS-CCSEEEEEETTEECTTS--C---GGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHH-HH
T ss_pred HH----CCC-CCCccEEEECCEECCCC--C---hhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHH-HH
Confidence 99 998 77899998887655321 1 12356999999999998888776543321111111000 00111 12
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++....++++..|||||+||++||++|+. +|++||||||+++| +++...++++.++...+++++|
T Consensus 118 l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~------~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vT 191 (359)
T 2yyz_A 118 ARKLLIDNLLDRKPTQLSGGQQQRVALARALVK------QPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVT 191 (359)
T ss_dssp HHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT------CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred HHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc------CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 222233445678899999999999999999999 99999999999999 7777788887665344599999
Q ss_pred HhHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKA 320 (388)
Q Consensus 308 H~l~~l~~~~d~~ 320 (388)
||++++...+|++
T Consensus 192 Hd~~~~~~~adri 204 (359)
T 2yyz_A 192 HDQAEAMTMASRI 204 (359)
T ss_dssp SCHHHHHHHCSEE
T ss_pred CCHHHHHHhCCEE
Confidence 9999999998865
No 12
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.97 E-value=4.8e-34 Score=279.97 Aligned_cols=197 Identities=15% Similarity=0.165 Sum_probs=148.8
Q ss_pred CcEEEEEEEeeceEEe-cCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 73 PRLIITKIVAFNFKSY-AGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy-~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
+++.+.+++ ++| ++..+|+ ||||+|++ |++++|+|||||||||||
T Consensus 13 ~~l~~~~l~----~~y~g~~~vl~--------~vsl~i~~----------------------Ge~~~llGpnGsGKSTLL 58 (355)
T 1z47_A 13 MTIEFVGVE----KIYPGGARSVR--------GVSFQIRE----------------------GEMVGLLGPSGSGKTTIL 58 (355)
T ss_dssp EEEEEEEEE----ECCTTSTTCEE--------EEEEEEET----------------------TCEEEEECSTTSSHHHHH
T ss_pred ceEEEEEEE----EEEcCCCEEEe--------eeEEEECC----------------------CCEEEEECCCCCcHHHHH
Confidence 356777777 889 7666654 99999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCC
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPG 230 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~ 230 (388)
|+|+ |++ ++.+|++.++|..+.. .. ...+.++|+||++.+++.+++.++..+.....+..... ...+.
T Consensus 59 r~ia----Gl~-~p~~G~I~i~g~~i~~--~~---~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~- 127 (355)
T 1z47_A 59 RLIA----GLE-RPTKGDVWIGGKRVTD--LP---PQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVR- 127 (355)
T ss_dssp HHHH----TSS-CCSEEEEEETTEECTT--CC---GGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHH-
T ss_pred HHHh----CCC-CCCccEEEECCEECCc--CC---hhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHH-
Confidence 9999 998 7789998888765431 11 12356999999999999888776543322221111111 01111
Q ss_pred ceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 231 TDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 231 ~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
..+...++....++++..|||||+||++||++|+. +|++||||||+++| +++...++++.++...++++
T Consensus 128 ~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~------~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 201 (355)
T 1z47_A 128 ELLRFMRLESYANRFPHELSGGQQQRVALARALAP------RPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF 201 (355)
T ss_dssp HHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT------CCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 12222233445678899999999999999999999 99999999999999 77777888887653345999
Q ss_pred HHHhHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKA 320 (388)
Q Consensus 306 vtH~l~~l~~~~d~~ 320 (388)
+|||++++...+|++
T Consensus 202 vTHd~~~a~~~adri 216 (355)
T 1z47_A 202 VTHDQEEALEVADRV 216 (355)
T ss_dssp ECSCHHHHHHHCSEE
T ss_pred ECCCHHHHHHhCCEE
Confidence 999999999998875
No 13
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.97 E-value=3.9e-34 Score=280.98 Aligned_cols=201 Identities=14% Similarity=0.174 Sum_probs=149.1
Q ss_pred cEEEEEEEeeceEEecCce--eecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKIVAFNFKSYAGYV--TLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~--~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
++.+.+++ ++|++.. +|+ ||||+|++ |++++|+|||||||||||
T Consensus 3 ~l~i~~l~----~~y~~~~~~vl~--------~vsl~i~~----------------------Ge~~~llGpnGsGKSTLL 48 (353)
T 1oxx_K 3 RIIVKNVS----KVFKKGKVVALD--------NVNINIEN----------------------GERFGILGPSGAGKTTFM 48 (353)
T ss_dssp CEEEEEEE----EEEGGGTEEEEE--------EEEEEECT----------------------TCEEEEECSCHHHHHHHH
T ss_pred EEEEEeEE----EEECCEeeeeEe--------ceEEEECC----------------------CCEEEEECCCCCcHHHHH
Confidence 46677777 8898766 655 99999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCC
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPG 230 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~ 230 (388)
++|+ |++ ++.+|++.+.|..+............+.++|+||++.+++.+++.++..+.....+..... ...+.
T Consensus 49 r~ia----Gl~-~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~- 122 (353)
T 1oxx_K 49 RIIA----GLD-VPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE- 122 (353)
T ss_dssp HHHH----TSS-CCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHH-
T ss_pred HHHh----CCC-CCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHH-
Confidence 9999 998 7789999888765532110001112356999999999999888776543322211111110 01111
Q ss_pred ceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 231 TDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 231 ~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
..+...++....++++..|||||+||++||++|+. +|++||||||+++| +++...++++.++...++++
T Consensus 123 ~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~------~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 196 (353)
T 1oxx_K 123 EVAKILDIHHVLNHFPRELSGAQQQRVALARALVK------DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV 196 (353)
T ss_dssp HHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT------CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHh------CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 12222233445678899999999999999999999 99999999999999 77888888887653445999
Q ss_pred HHHhHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKA 320 (388)
Q Consensus 306 vtH~l~~l~~~~d~~ 320 (388)
+|||++++...+|++
T Consensus 197 vTHd~~~~~~~adri 211 (353)
T 1oxx_K 197 VSHDPADIFAIADRV 211 (353)
T ss_dssp EESCHHHHHHHCSEE
T ss_pred EeCCHHHHHHhCCEE
Confidence 999999999998875
No 14
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.97 E-value=1.2e-33 Score=278.91 Aligned_cols=196 Identities=12% Similarity=0.182 Sum_probs=141.9
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|++..+|+ ||||+|++ |++++|+||||||||||||+
T Consensus 11 ~l~~~~l~----~~y~~~~vl~--------~vsl~i~~----------------------Ge~~~llGpnGsGKSTLLr~ 56 (372)
T 1v43_A 11 EVKLENLT----KRFGNFTAVN--------KLNLTIKD----------------------GEFLVLLGPSGCGKTTTLRM 56 (372)
T ss_dssp CEEEEEEE----EEETTEEEEE--------EEEEEECT----------------------TCEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEEE----EEECCEEEEe--------eeEEEECC----------------------CCEEEEECCCCChHHHHHHH
Confidence 46677777 8898877765 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCCce
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGTD 232 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~~ 232 (388)
|+ |++ ++.+|++.++|..+.-. . ...+.++|+||++.+++.+++.++..+.....+..... ...+. ..
T Consensus 57 ia----Gl~-~p~~G~I~i~g~~i~~~--~---~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~-~~ 125 (372)
T 1v43_A 57 IA----GLE-EPTEGRIYFGDRDVTYL--P---PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR-WA 125 (372)
T ss_dssp HH----TSS-CCSEEEEEETTEECTTS--C---GGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHH-HH
T ss_pred HH----cCC-CCCceEEEECCEECCCC--C---hhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHH-HH
Confidence 99 998 77899988887654321 1 12356999999999888888766543221111111110 00111 12
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++....++.+..|||||+||++||++|+. +|++||||||+++| +++...++++.++...+++++|
T Consensus 126 l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~------~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vT 199 (372)
T 1v43_A 126 AELLQIEELLNRYPAQLSGGQRQRVAVARAIVV------EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 199 (372)
T ss_dssp HHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT------CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc------CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 222233445678899999999999999999999 99999999999999 7777788887766344599999
Q ss_pred HhHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKA 320 (388)
Q Consensus 308 H~l~~l~~~~d~~ 320 (388)
||++++...+|++
T Consensus 200 Hd~~~a~~~adri 212 (372)
T 1v43_A 200 HDQVEAMTMGDRI 212 (372)
T ss_dssp SCHHHHHHHCSEE
T ss_pred CCHHHHHHhCCEE
Confidence 9999999998865
No 15
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=4.2e-34 Score=269.28 Aligned_cols=197 Identities=18% Similarity=0.210 Sum_probs=147.0
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|+++.+|+ +|||+|++ |++++|+|||||||||||++
T Consensus 15 ~l~i~~l~----~~y~~~~vl~--------~vsl~i~~----------------------Gei~~l~G~NGsGKSTLlk~ 60 (256)
T 1vpl_A 15 AVVVKDLR----KRIGKKEILK--------GISFEIEE----------------------GEIFGLIGPNGAGKTTTLRI 60 (256)
T ss_dssp CEEEEEEE----EEETTEEEEE--------EEEEEECT----------------------TCEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEEE----EEECCEEEEE--------eeEEEEcC----------------------CcEEEEECCCCCCHHHHHHH
Confidence 57777887 8898877765 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCCce
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGTD 232 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~~ 232 (388)
|+ |++ ++.+|++.+.|..+.- ..... ++.++++||++..++.+++.++..++...++..... ...+. ..
T Consensus 61 l~----Gl~-~p~~G~I~~~g~~~~~---~~~~~-~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~-~~ 130 (256)
T 1vpl_A 61 IS----TLI-KPSSGIVTVFGKNVVE---EPHEV-RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVE-RA 130 (256)
T ss_dssp HT----TSS-CCSEEEEEETTEETTT---CHHHH-HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHH-HH
T ss_pred Hh----cCC-CCCceEEEECCEECCc---cHHHH-hhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHH-HH
Confidence 99 998 7789998887765421 11223 356999999988887777765543322222211110 00110 11
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++....++++..|||||+||+.||++|+. +|++|||||||++| ..+.+.+.++++++. +|+++|
T Consensus 131 l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~------~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~-tiiivt 203 (256)
T 1vpl_A 131 TEIAGLGEKIKDRVSTYSKGMVRKLLIARALMV------NPRLAILDEPTSGLDVLNAREVRKILKQASQEGL-TILVSS 203 (256)
T ss_dssp HHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTT------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC-EEEEEE
T ss_pred HHHCCCchHhcCChhhCCHHHHHHHHHHHHHHc------CCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCC-EEEEEc
Confidence 222233334567889999999999999999999 99999999999999 777888888876554 599999
Q ss_pred HhHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAV 321 (388)
Q Consensus 308 H~l~~l~~~~d~~~ 321 (388)
|+++.+...||++.
T Consensus 204 Hd~~~~~~~~d~v~ 217 (256)
T 1vpl_A 204 HNMLEVEFLCDRIA 217 (256)
T ss_dssp CCHHHHTTTCSEEE
T ss_pred CCHHHHHHHCCEEE
Confidence 99999998888653
No 16
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.97 E-value=9.9e-34 Score=278.61 Aligned_cols=196 Identities=17% Similarity=0.238 Sum_probs=148.2
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|++..+++ ||||+|++ |++++|+||||||||||||+
T Consensus 3 ~l~~~~l~----~~y~~~~vl~--------~vsl~i~~----------------------Ge~~~llGpnGsGKSTLLr~ 48 (362)
T 2it1_A 3 EIKLENIV----KKFGNFTALN--------NINLKIKD----------------------GEFMALLGPSGSGKSTLLYT 48 (362)
T ss_dssp CEEEEEEE----EESSSSEEEE--------EEEEEECT----------------------TCEEEEECCTTSSHHHHHHH
T ss_pred EEEEEeEE----EEECCEEEEE--------eeEEEECC----------------------CCEEEEECCCCchHHHHHHH
Confidence 46677777 8898777765 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCCce
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPGTD 232 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~~~ 232 (388)
|+ |++ ++.+|++.++|..+... .. ..+.++|+||++.+++.+++.++..+.....+..... ...+. ..
T Consensus 49 ia----Gl~-~p~~G~I~i~g~~i~~~--~~---~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~-~~ 117 (362)
T 2it1_A 49 IA----GIY-KPTSGKIYFDEKDVTEL--PP---KDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVR-EV 117 (362)
T ss_dssp HH----TSS-CCSEEEEEETTEECTTS--CG---GGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHH-HH
T ss_pred Hh----cCC-CCCceEEEECCEECCcC--CH---hHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHH-HH
Confidence 99 998 77899998887654321 11 2356999999999999888776543321211111111 01111 12
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++....++.+..|||||+||++||++|+. +|++||||||+++| .++...++++.++...+++++|
T Consensus 118 l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~------~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vT 191 (362)
T 2it1_A 118 AKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK------EPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVT 191 (362)
T ss_dssp HHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTT------CCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHcCCchHhhCChhhCCHHHHHHHHHHHHHHc------CCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 222233345678899999999999999999999 99999999999999 7777788888665334599999
Q ss_pred HhHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKA 320 (388)
Q Consensus 308 H~l~~l~~~~d~~ 320 (388)
||++++...+|++
T Consensus 192 Hd~~~a~~~adri 204 (362)
T 2it1_A 192 HDQAEALAMADRI 204 (362)
T ss_dssp SCHHHHHHHCSEE
T ss_pred CCHHHHHHhCCEE
Confidence 9999999998865
No 17
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.97 E-value=2.1e-34 Score=271.59 Aligned_cols=199 Identities=18% Similarity=0.255 Sum_probs=145.6
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|++..+|+ ||||+|++ |++++|+||||||||||+++
T Consensus 7 ~l~i~~l~----~~y~~~~vl~--------~vsl~i~~----------------------Ge~~~liG~nGsGKSTLlk~ 52 (257)
T 1g6h_A 7 ILRTENIV----KYFGEFKALD--------GVSISVNK----------------------GDVTLIIGPNGSGKSTLINV 52 (257)
T ss_dssp EEEEEEEE----EEETTEEEEE--------EECCEEET----------------------TCEEEEECSTTSSHHHHHHH
T ss_pred EEEEeeeE----EEECCEeeEe--------eeEEEEeC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 46667777 7898877765 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccc--cC-----------C
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQI--ID-----------K 220 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~--~~-----------~ 220 (388)
|+ |++ ++.+|++.+.|..+... ......++.++++||++..++..++.++..+.... .+ .
T Consensus 53 l~----Gl~-~p~~G~i~~~g~~~~~~--~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~ 125 (257)
T 1g6h_A 53 IT----GFL-KADEGRVYFENKDITNK--EPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 125 (257)
T ss_dssp HT----TSS-CCSEEEEEETTEECTTC--CHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCC
T ss_pred Hh----CCC-CCCCcEEEECCEECCCC--CHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccC
Confidence 99 998 77899988877654211 11122234699999998877777766544322111 01 0
Q ss_pred CCcc-ccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHH
Q psy14062 221 PNEE-YEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDE 294 (388)
Q Consensus 221 ~~~~-~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~e 294 (388)
.... ...+. ..+...++....++++..|||||+||+.||++|+. +|++|||||||++| +.+...+.+
T Consensus 126 ~~~~~~~~~~-~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~------~p~lllLDEPts~LD~~~~~~l~~~l~~ 198 (257)
T 1g6h_A 126 KEEEMVEKAF-KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMT------NPKMIVMDEPIAGVAPGLAHDIFNHVLE 198 (257)
T ss_dssp CCHHHHHHHH-HHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT------CCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHc------CCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 0000 00000 11222233334578899999999999999999999 99999999999999 778888888
Q ss_pred HHHHhhhHHHHHHHhHHHHHHHHHHHH
Q psy14062 295 ERTEKLTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 295 l~~e~~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
+++++. +|+++||+++.+...||++.
T Consensus 199 l~~~g~-tvi~vtHd~~~~~~~~d~v~ 224 (257)
T 1g6h_A 199 LKAKGI-TFLIIEHRLDIVLNYIDHLY 224 (257)
T ss_dssp HHHTTC-EEEEECSCCSTTGGGCSEEE
T ss_pred HHHCCC-EEEEEecCHHHHHHhCCEEE
Confidence 876654 59999999999988888653
No 18
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.97 E-value=1.1e-33 Score=279.58 Aligned_cols=200 Identities=10% Similarity=0.146 Sum_probs=148.6
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|++..+|+ ||||+|++ |++++|+||||||||||||+
T Consensus 3 ~l~~~~l~----~~y~~~~vl~--------~vsl~i~~----------------------Ge~~~llGpnGsGKSTLLr~ 48 (372)
T 1g29_1 3 GVRLVDVW----KVFGEVTAVR--------EMSLEVKD----------------------GEFMILLGPSGCGKTTTLRM 48 (372)
T ss_dssp EEEEEEEE----EEETTEEEEE--------EEEEEEET----------------------TCEEEEECSTTSSHHHHHHH
T ss_pred EEEEEeEE----EEECCEEEEe--------eeEEEEcC----------------------CCEEEEECCCCcHHHHHHHH
Confidence 35566666 8898877765 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCcc--chhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcc-ccccCC
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYR--ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEE-YEIIPG 230 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~--~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~-~~~~~~ 230 (388)
|+ |++ ++.+|++.++|..+...... .. ...+.++||||++.+++.+++.++..+.....+..... ...+.
T Consensus 49 ia----Gl~-~p~~G~I~i~g~~~~~~~~~~~~~-~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~- 121 (372)
T 1g29_1 49 IA----GLE-EPSRGQIYIGDKLVADPEKGIFVP-PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR- 121 (372)
T ss_dssp HH----TSS-CCSEEEEEETTEEEEEGGGTEECC-GGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHH-
T ss_pred HH----cCC-CCCccEEEECCEECccccccccCC-HhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHH-
Confidence 99 998 77899998887655320000 11 12356999999999999888776543322221211111 01111
Q ss_pred ceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHH
Q psy14062 231 TDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 231 ~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~ 305 (388)
..+...++....++.+..|||||+||++||++|+. +|++||||||+++| +++...++++.++...++++
T Consensus 122 ~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~------~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 195 (372)
T 1g29_1 122 EVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR------KPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY 195 (372)
T ss_dssp HHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT------CCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhc------CCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 12222333445678899999999999999999999 99999999999999 77777888877653445999
Q ss_pred HHHhHHHHHHHHHHH
Q psy14062 306 VETDLKALEPELRKA 320 (388)
Q Consensus 306 vtH~l~~l~~~~d~~ 320 (388)
+|||++++...||++
T Consensus 196 vTHd~~~a~~~adri 210 (372)
T 1g29_1 196 VTHDQVEAMTMGDRI 210 (372)
T ss_dssp EESCHHHHHHHCSEE
T ss_pred ECCCHHHHHHhCCEE
Confidence 999999999998875
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.96 E-value=2e-33 Score=275.20 Aligned_cols=192 Identities=13% Similarity=0.168 Sum_probs=145.8
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|++. ++. +|||+|++ |++++|+||||||||||||+|
T Consensus 2 l~~~~l~----~~y~~~-~l~--------~vsl~i~~----------------------Ge~~~llGpnGsGKSTLLr~i 46 (348)
T 3d31_A 2 IEIESLS----RKWKNF-SLD--------NLSLKVES----------------------GEYFVILGPTGAGKTLFLELI 46 (348)
T ss_dssp EEEEEEE----EECSSC-EEE--------EEEEEECT----------------------TCEEEEECCCTHHHHHHHHHH
T ss_pred EEEEEEE----EEECCE-EEe--------eeEEEEcC----------------------CCEEEEECCCCccHHHHHHHH
Confidence 5566777 889876 655 99999999 999999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEE
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLE 234 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~ 234 (388)
+ |++ ++.+|++.++|..+.- ... ..+.++|+||++.+++.+++.++..+.....+.... ..+. ..+.
T Consensus 47 a----Gl~-~p~~G~I~~~g~~i~~----~~~-~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~--~~v~-~~l~ 113 (348)
T 3d31_A 47 A----GFH-VPDSGRILLDGKDVTD----LSP-EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP--KRVL-DTAR 113 (348)
T ss_dssp H----TSS-CCSEEEEEETTEECTT----SCH-HHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH--HHHH-HHHH
T ss_pred H----cCC-CCCCcEEEECCEECCC----Cch-hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH--HHHH-HHHH
Confidence 9 999 7789998887765431 111 235699999999999988877654332121111111 1111 1222
Q ss_pred EEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHh
Q psy14062 235 IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETD 309 (388)
Q Consensus 235 ~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~ 309 (388)
..++....++.+..|||||+||++||++|+. +|++||||||+++| +++...++++.++...+++++|||
T Consensus 114 ~~~L~~~~~~~~~~LSgGq~QRvalAraL~~------~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd 187 (348)
T 3d31_A 114 DLKIEHLLDRNPLTLSGGEQQRVALARALVT------NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187 (348)
T ss_dssp HTTCTTTTTSCGGGSCHHHHHHHHHHHHTTS------CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred HcCCchHhcCChhhCCHHHHHHHHHHHHHHc------CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 2233344578899999999999999999999 99999999999999 777788888876533459999999
Q ss_pred HHHHHHHHHHH
Q psy14062 310 LKALEPELRKA 320 (388)
Q Consensus 310 l~~l~~~~d~~ 320 (388)
++++...+|++
T Consensus 188 ~~~~~~~adri 198 (348)
T 3d31_A 188 QTEARIMADRI 198 (348)
T ss_dssp HHHHHHHCSEE
T ss_pred HHHHHHhCCEE
Confidence 99999998865
No 20
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.96 E-value=7.9e-34 Score=260.47 Aligned_cols=193 Identities=17% Similarity=0.131 Sum_probs=144.4
Q ss_pred CCcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 72 GPRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 72 ~~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
+.++.+.+++ ++|++ .+|+ +|||+|.+ |++++|+|||||||||||
T Consensus 8 ~~~l~~~~ls----~~y~~-~il~--------~vsl~i~~----------------------Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 8 GSKLEIRDLS----VGYDK-PVLE--------RITMTIEK----------------------GNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp -CEEEEEEEE----EESSS-EEEE--------EEEEEEET----------------------TCCEEEECCTTSSHHHHH
T ss_pred CceEEEEEEE----EEeCC-eEEe--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHH
Confidence 3577888888 88987 7755 99999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCc
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGT 231 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~ 231 (388)
++|+ |++ ++.+|++.+.|..+. . +++.++|++|++..++.+++.++..++...++.... ...+. .
T Consensus 53 k~l~----Gl~-~p~~G~I~~~g~~~~-------~-~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~-~~~~~-~ 117 (214)
T 1sgw_A 53 KTIS----TYL-KPLKGEIIYNGVPIT-------K-VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN-KNEIM-D 117 (214)
T ss_dssp HHHT----TSS-CCSEEEEEETTEEGG-------G-GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC-HHHHH-H
T ss_pred HHHh----cCC-CCCCeEEEECCEEhh-------h-hcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchH-HHHHH-H
Confidence 9999 998 778999888775442 1 235699999998887777766544322122111111 01000 1
Q ss_pred eEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHH
Q psy14062 232 DLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLV 306 (388)
Q Consensus 232 ~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~v 306 (388)
.+...++... ++++..|||||+||+.||++|+. +|+++||||||++| +.+...+.++++++. +++++
T Consensus 118 ~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~------~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~-tiiiv 189 (214)
T 1sgw_A 118 ALESVEVLDL-KKKLGELSQGTIRRVQLASTLLV------NAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG-IVIIS 189 (214)
T ss_dssp HHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTS------CCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHS-EEEEE
T ss_pred HHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHh------CCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCC-EEEEE
Confidence 1111122234 67889999999999999999999 99999999999999 778888888876655 59999
Q ss_pred HHhHHHHHHHHHHHHH
Q psy14062 307 ETDLKALEPELRKAVN 322 (388)
Q Consensus 307 tH~l~~l~~~~d~~~~ 322 (388)
||+++.+...+|++..
T Consensus 190 tHd~~~~~~~~d~v~~ 205 (214)
T 1sgw_A 190 SREELSYCDVNENLHK 205 (214)
T ss_dssp ESSCCTTSSEEEEGGG
T ss_pred eCCHHHHHHhCCEEEE
Confidence 9999888877776543
No 21
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.96 E-value=7.9e-33 Score=263.70 Aligned_cols=199 Identities=21% Similarity=0.212 Sum_probs=139.3
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|+++.+|+ ||||+|.+ |++++|+||||||||||+++
T Consensus 21 ~l~~~~l~----~~y~~~~vL~--------~isl~i~~----------------------Ge~~~liG~NGsGKSTLlk~ 66 (279)
T 2ihy_A 21 LIQLDQIG----RMKQGKTILK--------KISWQIAK----------------------GDKWILYGLNGAGKTTLLNI 66 (279)
T ss_dssp EEEEEEEE----EEETTEEEEE--------EEEEEEET----------------------TCEEEEECCTTSSHHHHHHH
T ss_pred eEEEEeEE----EEECCEEEEE--------eeeEEEcC----------------------CCEEEEECCCCCcHHHHHHH
Confidence 45566666 7898877765 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCC--CcceEEEEEEec----cccCCCCcc-cc
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVG--GVSRCSVAIHFA----QIIDKPNEE-YE 226 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~--~~~~~eV~~~~~----~~~~~~~~~-~~ 226 (388)
|+ |++ ++.+|++.+.|..+.......... ++.++++||++..+. .+++.++..+.. .++...... ..
T Consensus 67 l~----Gl~-~p~~G~I~~~g~~~~~~~~~~~~~-~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~ 140 (279)
T 2ihy_A 67 LN----AYE-PATSGTVNLFGKMPGKVGYSAETV-RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRN 140 (279)
T ss_dssp HT----TSS-CCSEEEEEETTBCCC---CCHHHH-HTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHH
T ss_pred Hh----CCC-CCCCeEEEECCEEcccccCCHHHH-cCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHH
Confidence 99 998 778999888775432001111222 356999999875432 235544322110 001110100 00
Q ss_pred ccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhh
Q psy14062 227 IIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLT 301 (388)
Q Consensus 227 ~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~ 301 (388)
.+. ..+...++....++++..|||||+||+.||++|+. +|++|||||||++| +.+.+.+.++++++.
T Consensus 141 ~~~-~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~------~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~- 212 (279)
T 2ihy_A 141 EAH-QLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMG------QPQVLILDEPAAGLDFIARESLLSILDSLSDSYP- 212 (279)
T ss_dssp HHH-HHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCT-
T ss_pred HHH-HHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhC------CCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCC-
Confidence 000 11111222334578899999999999999999999 99999999999999 777888888876654
Q ss_pred HH--HHHHHhHHHHHHHHHHH
Q psy14062 302 RV--QLVETDLKALEPELRKA 320 (388)
Q Consensus 302 ~i--i~vtH~l~~l~~~~d~~ 320 (388)
++ +++||+++.+.+.||++
T Consensus 213 tv~~iivtHd~~~~~~~~d~v 233 (279)
T 2ihy_A 213 TLAMIYVTHFIEEITANFSKI 233 (279)
T ss_dssp TCEEEEEESCGGGCCTTCCEE
T ss_pred EEEEEEEecCHHHHHHhCCEE
Confidence 59 99999999988888765
No 22
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.96 E-value=6.4e-32 Score=253.99 Aligned_cols=185 Identities=16% Similarity=0.248 Sum_probs=137.9
Q ss_pred cEEEEEEEeeceEEec-CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSYA-GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~-~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
++.+.+++ ++|+ ++.+|+ ||||+|++ |++++|+||||||||||++
T Consensus 4 ~l~i~~l~----~~y~~~~~vl~--------~isl~i~~----------------------Ge~~~l~G~nGsGKSTLl~ 49 (253)
T 2nq2_C 4 ALSVENLG----FYYQAENFLFQ--------QLNFDLNK----------------------GDILAVLGQNGCGKSTLLD 49 (253)
T ss_dssp EEEEEEEE----EEETTTTEEEE--------EEEEEEET----------------------TCEEEEECCSSSSHHHHHH
T ss_pred eEEEeeEE----EEeCCCCeEEE--------EEEEEECC----------------------CCEEEEECCCCCCHHHHHH
Confidence 45566666 7898 777755 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEecccc-C---CCCcc-ccc
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQII-D---KPNEE-YEI 227 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~-~---~~~~~-~~~ 227 (388)
+|+ |++ ++.+|++. +++.++++||++..++..++.++..+..... + ..... ...
T Consensus 50 ~l~----Gl~-~p~~G~I~----------------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 108 (253)
T 2nq2_C 50 LLL----GIH-RPIQGKIE----------------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV 108 (253)
T ss_dssp HHT----TSS-CCSEEEEE----------------ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHH
T ss_pred HHh----CCC-CCCCcEEE----------------EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHH
Confidence 999 998 77899864 1246999999988777767655433221110 1 00110 000
Q ss_pred cCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH-hhh
Q psy14062 228 IPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE-KLT 301 (388)
Q Consensus 228 ~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e-~~~ 301 (388)
+. ..+...++....++++..|||||+||+.||++|+. +|++|||||||++| +.+...+.+++++ +.
T Consensus 109 ~~-~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~------~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~- 180 (253)
T 2nq2_C 109 AM-QALDYLNLTHLAKREFTSLSGGQRQLILIARAIAS------ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNM- 180 (253)
T ss_dssp HH-HHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT------TCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCC-
T ss_pred HH-HHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC-
Confidence 10 11112223334567899999999999999999999 99999999999999 7778888888766 44
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q psy14062 302 RVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 302 ~ii~vtH~l~~l~~~~d~~~ 321 (388)
+++++||+++.+.+.||++.
T Consensus 181 tvi~vtHd~~~~~~~~d~v~ 200 (253)
T 2nq2_C 181 TVVFTTHQPNQVVAIANKTL 200 (253)
T ss_dssp EEEEEESCHHHHHHHCSEEE
T ss_pred EEEEEecCHHHHHHhCCEEE
Confidence 59999999999999988754
No 23
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.96 E-value=2.8e-32 Score=258.33 Aligned_cols=193 Identities=17% Similarity=0.238 Sum_probs=139.5
Q ss_pred cEEEEEEEeeceEEec--C---ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChh
Q psy14062 74 RLIITKIVAFNFKSYA--G---YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKS 148 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~--~---~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKS 148 (388)
++.+.+++ ++|+ + +.+|+ ||||+|.+ |++++|+||||||||
T Consensus 2 ~l~~~~l~----~~y~~~~~~~~~vl~--------~vsl~i~~----------------------Ge~~~liG~nGsGKS 47 (266)
T 2yz2_A 2 RIEVVNVS----HIFHRGTPLEKKALE--------NVSLVINE----------------------GECLLVAGNTGSGKS 47 (266)
T ss_dssp CEEEEEEE----EEESTTSTTCEEEEE--------EEEEEECT----------------------TCEEEEECSTTSSHH
T ss_pred EEEEEEEE----EEecCCCccccceee--------eeEEEEcC----------------------CCEEEEECCCCCcHH
Confidence 35666676 7897 3 45554 99999999 999999999999999
Q ss_pred hHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEeccc-CCCCCcceEEEEEEeccccCCCCcc-cc
Q psy14062 149 NVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKS-DQVGGVSRCSVAIHFAQIIDKPNEE-YE 226 (388)
Q Consensus 149 TLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~-~~~~~~~~~eV~~~~~~~~~~~~~~-~~ 226 (388)
||+++|+ |++ ++.+|++.+.|..+.- ...| +.++++||++ ..++..++.++..+..... ..... ..
T Consensus 48 TLl~~i~----Gl~-~p~~G~I~~~g~~~~~-----~~~~-~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~ 115 (266)
T 2yz2_A 48 TLLQIVA----GLI-EPTSGDVLYDGERKKG-----YEIR-RNIGIAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVP 115 (266)
T ss_dssp HHHHHHT----TSS-CCSEEEEEETTEECCH-----HHHG-GGEEEECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHH
T ss_pred HHHHHHh----CCC-CCCCcEEEECCEECch-----HHhh-hhEEEEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHH
Confidence 9999999 998 7789998887654321 1233 4699999986 3445566554432221111 11110 00
Q ss_pred ccCCceEEEEEEe--eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 227 IIPGTDLEIARTA--FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 227 ~~~~~~l~~~r~~--~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
.+. ..+...++. ...++.+..|||||+||+.||++|+. +|++|||||||++| ..+...+.++++++
T Consensus 116 ~~~-~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~------~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g 188 (266)
T 2yz2_A 116 LVK-KAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVH------EPDILILDEPLVGLDREGKTDLLRIVEKWKTLG 188 (266)
T ss_dssp HHH-HHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTT------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHc------CCCEEEEcCccccCCHHHHHHHHHHHHHHHHcC
Confidence 000 112222333 44577889999999999999999999 99999999999999 77788888887665
Q ss_pred hhHHHHHHHhHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~ 320 (388)
. +|+++||+++.+...||++
T Consensus 189 ~-tii~vtHd~~~~~~~~d~v 208 (266)
T 2yz2_A 189 K-TVILISHDIETVINHVDRV 208 (266)
T ss_dssp C-EEEEECSCCTTTGGGCSEE
T ss_pred C-EEEEEeCCHHHHHHhCCEE
Confidence 4 5999999999998888765
No 24
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.95 E-value=4.8e-32 Score=252.88 Aligned_cols=191 Identities=15% Similarity=0.144 Sum_probs=138.1
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
+.+.+++ ++|++ +++ ||||+|++ ++++|+||||||||||+++|
T Consensus 2 l~~~~l~----~~y~~--~l~--------~isl~i~~-----------------------e~~~liG~nGsGKSTLl~~l 44 (240)
T 2onk_A 2 FLKVRAE----KRLGN--FRL--------NVDFEMGR-----------------------DYCVLLGPTGAGKSVFLELI 44 (240)
T ss_dssp CEEEEEE----EEETT--EEE--------EEEEEECS-----------------------SEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEEE----EEeCC--EEe--------eeEEEECC-----------------------EEEEEECCCCCCHHHHHHHH
Confidence 4566666 78975 344 99999988 69999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEE
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLE 234 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~ 234 (388)
+ |++ ++.+|++.++|..+.- ... .++.++++||++..++.+++.++..+....++.. .....+. ..+.
T Consensus 45 ~----Gl~-~p~~G~i~~~g~~~~~----~~~-~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~-~~~~~~~-~~l~ 112 (240)
T 2onk_A 45 A----GIV-KPDRGEVRLNGADITP----LPP-ERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERV-ERDRRVR-EMAE 112 (240)
T ss_dssp H----TSS-CCSEEEEEETTEECTT----SCT-TTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHH-HHHHHHH-HHHH
T ss_pred h----CCC-CCCceEEEECCEECCc----Cch-hhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCc-hHHHHHH-HHHH
Confidence 9 998 7789998887754421 111 2356999999988887777665432211111100 0000000 1111
Q ss_pred EEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHh
Q psy14062 235 IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETD 309 (388)
Q Consensus 235 ~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~ 309 (388)
..++....++++..|||||+||+.||++|+. +|+++||||||++| +.+.+.+.+++++...+++++||+
T Consensus 113 ~~~l~~~~~~~~~~LSgGqkqRv~lAral~~------~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd 186 (240)
T 2onk_A 113 KLGIAHLLDRKPARLSGGERQRVALARALVI------QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186 (240)
T ss_dssp TTTCTTTTTCCGGGSCHHHHHHHHHHHHHTT------CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred HcCCHHHhcCChhhCCHHHHHHHHHHHHHHc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 1222334567899999999999999999999 99999999999999 778888888866533359999999
Q ss_pred HHHHHHHHHHH
Q psy14062 310 LKALEPELRKA 320 (388)
Q Consensus 310 l~~l~~~~d~~ 320 (388)
++.+...||++
T Consensus 187 ~~~~~~~~d~i 197 (240)
T 2onk_A 187 LIEAAMLADEV 197 (240)
T ss_dssp HHHHHHHCSEE
T ss_pred HHHHHHhCCEE
Confidence 99999998875
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.95 E-value=2.6e-32 Score=256.30 Aligned_cols=199 Identities=17% Similarity=0.205 Sum_probs=134.1
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|++..+|+ ||||+|.+ |++++|+||||||||||+++
T Consensus 3 ~l~~~~l~----~~y~~~~vl~--------~vsl~i~~----------------------Ge~~~l~G~nGsGKSTLlk~ 48 (250)
T 2d2e_A 3 QLEIRDLW----ASIDGETILK--------GVNLVVPK----------------------GEVHALMGPNGAGKSTLGKI 48 (250)
T ss_dssp EEEEEEEE----EEETTEEEEE--------EEEEEEET----------------------TCEEEEECSTTSSHHHHHHH
T ss_pred eEEEEeEE----EEECCEEEEe--------ceEEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 35566666 7798877765 99999999 99999999999999999999
Q ss_pred hhhcccEE--EcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEec-cccCCC-C-cc-ccc
Q psy14062 154 MLFRFNAI--IGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFA-QIIDKP-N-EE-YEI 227 (388)
Q Consensus 154 i~~~~ngI--iGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~-~~~~~~-~-~~-~~~ 227 (388)
|+ |+ + ++.+|++.+.|..+.-. .....+...++++||++..++.+++.++..+.. ...+.. . .. ...
T Consensus 49 l~----Gl~~~-~p~~G~I~~~g~~~~~~--~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 121 (250)
T 2d2e_A 49 LA----GDPEY-TVERGEILLDGENILEL--SPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTK 121 (250)
T ss_dssp HH----TCTTC-EEEEEEEEETTEECTTS--CHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred Hh----CCCCC-CCCceEEEECCEECCCC--CHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHH
Confidence 99 87 5 56799988877654311 111222345899999988887777655432211 111110 0 00 000
Q ss_pred cCCceEEEEEE-eeeCCCCeee-eCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhh
Q psy14062 228 IPGTDLEIART-AFYDNSSYYT-LNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKL 300 (388)
Q Consensus 228 ~~~~~l~~~r~-~~~~~~~~~~-LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~ 300 (388)
+. ..+...++ ....++++.. |||||+||+.||++|+. +|++|||||||++| +.+.+.+.++++++.
T Consensus 122 ~~-~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~------~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~ 194 (250)
T 2d2e_A 122 VK-KALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL------EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNF 194 (250)
T ss_dssp HH-HHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH------CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTC
T ss_pred HH-HHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCC
Confidence 10 11111122 1234566777 99999999999999999 99999999999999 667778877755544
Q ss_pred hHHHHHHHhHHHHHHH-HHHHH
Q psy14062 301 TRVQLVETDLKALEPE-LRKAV 321 (388)
Q Consensus 301 ~~ii~vtH~l~~l~~~-~d~~~ 321 (388)
+++++||+++.+... +|++.
T Consensus 195 -tvi~vtHd~~~~~~~~~d~v~ 215 (250)
T 2d2e_A 195 -GALVITHYQRILNYIQPDKVH 215 (250)
T ss_dssp -EEEEECSSSGGGGTSCCSEEE
T ss_pred -EEEEEecCHHHHHHhcCCEEE
Confidence 599999999988877 47553
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.95 E-value=1.7e-31 Score=253.50 Aligned_cols=196 Identities=17% Similarity=0.134 Sum_probs=136.7
Q ss_pred CcEEEEEEEeeceEEecC---ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhh
Q psy14062 73 PRLIITKIVAFNFKSYAG---YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSN 149 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~~---~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKST 149 (388)
+++.+.+++ ++|++ ..+| ++|||+|++ |++++|+|||||||||
T Consensus 15 ~~l~~~~l~----~~y~~~~~~~vl--------~~vsl~i~~----------------------Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 15 GLVKFQDVS----FAYPNHPNVQVL--------QGLTFTLYP----------------------GKVTALVGPNGSGKST 60 (271)
T ss_dssp CCEEEEEEE----ECCTTCTTSCCE--------EEEEEEECT----------------------TCEEEEECSTTSSHHH
T ss_pred ceEEEEEEE----EEeCCCCCceee--------EeeEEEECC----------------------CCEEEEECCCCCCHHH
Confidence 357778887 78975 4554 499999999 9999999999999999
Q ss_pred HHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCC-ccc-c-
Q psy14062 150 VIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPN-EEY-E- 226 (388)
Q Consensus 150 Ll~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~-~~~-~- 226 (388)
||++|+ |++ ++.+|++.++|..+... ..... ++.++|+||++..++ .++.++..+... .... ... .
T Consensus 61 Llk~l~----Gl~-~p~~G~I~~~g~~i~~~--~~~~~-~~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~~~~~~~~~ 129 (271)
T 2ixe_A 61 VAALLQ----NLY-QPTGGKVLLDGEPLVQY--DHHYL-HTQVAAVGQEPLLFG-RSFRENIAYGLT--RTPTMEEITAV 129 (271)
T ss_dssp HHHHHT----TSS-CCSEEEEEETTEEGGGB--CHHHH-HHHEEEECSSCCCCS-SBHHHHHHTTCS--SCCCHHHHHHH
T ss_pred HHHHHh----cCC-CCCCCEEEECCEEcccC--CHHHH-hccEEEEecCCcccc-ccHHHHHhhhcc--cCChHHHHHHH
Confidence 999999 998 77899988887655321 11222 346999999987765 355443322111 0001 000 0
Q ss_pred --ccC-CceEEEE--EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHH
Q psy14062 227 --IIP-GTDLEIA--RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEER 296 (388)
Q Consensus 227 --~~~-~~~l~~~--r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~ 296 (388)
... ...+... ++....++++..|||||+||+.||++|+. +|++|||||||++| ..+...+.++.
T Consensus 130 ~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~------~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 203 (271)
T 2ixe_A 130 AMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR------KPRLLILDNATSALDAGNQLRVQRLLYESP 203 (271)
T ss_dssp HHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT------CCSEEEEESTTTTCCHHHHHHHHHHHHHCT
T ss_pred HHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc------CCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 000 0000000 11223467788999999999999999999 99999999999999 66777777765
Q ss_pred HHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 297 TEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 297 ~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
++...+++++||+++.+.. ||++
T Consensus 204 ~~~g~tviivtHd~~~~~~-~d~v 226 (271)
T 2ixe_A 204 EWASRTVLLITQQLSLAER-AHHI 226 (271)
T ss_dssp TTTTSEEEEECSCHHHHTT-CSEE
T ss_pred hhcCCEEEEEeCCHHHHHh-CCEE
Confidence 4323359999999998864 7764
No 27
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.95 E-value=1.1e-31 Score=254.27 Aligned_cols=199 Identities=15% Similarity=0.149 Sum_probs=136.8
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
++.+.+++ ++|+++.+|+ ||||+|++ |++++|+||||||||||+++
T Consensus 20 ~l~~~~l~----~~y~~~~vl~--------~vsl~i~~----------------------Ge~~~l~G~NGsGKSTLlk~ 65 (267)
T 2zu0_C 20 MLSIKDLH----VSVEDKAILR--------GLSLDVHP----------------------GEVHAIMGPNGSGKSTLSAT 65 (267)
T ss_dssp CEEEEEEE----EEETTEEEEE--------EEEEEECT----------------------TCEEEEECCTTSSHHHHHHH
T ss_pred eEEEEeEE----EEECCEEEEE--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 57777777 7898777765 99999999 99999999999999999999
Q ss_pred hhhcccEEEc-CCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEec-cc---cCC---CCcc-
Q psy14062 154 MLFRFNAIIG-PNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFA-QI---IDK---PNEE- 224 (388)
Q Consensus 154 i~~~~ngIiG-pngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~-~~---~~~---~~~~- 224 (388)
|+ |++. ++.+|++.+.|..+... .....+...++++||++..++.+++.++..... .. ... ....
T Consensus 66 l~----Gl~~~~p~~G~I~~~g~~i~~~--~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~ 139 (267)
T 2zu0_C 66 LA----GREDYEVTGGTVEFKGKDLLAL--SPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDF 139 (267)
T ss_dssp HH----TCTTCEEEEEEEEETTEEGGGS--CHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHH
T ss_pred Hh----CCCCCCCCCeEEEECCEECCcC--CHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHH
Confidence 99 8731 45689988877654321 111222345899999988877766544322110 00 111 0000
Q ss_pred ccccCCceEEEEEEe-eeCCCCee-eeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHH
Q psy14062 225 YEIIPGTDLEIARTA-FYDNSSYY-TLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERT 297 (388)
Q Consensus 225 ~~~~~~~~l~~~r~~-~~~~~~~~-~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~ 297 (388)
...+. ..+...++. ...++++. .|||||+||+.||++|+. +|++|||||||++| +.+.+.+.++++
T Consensus 140 ~~~~~-~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~------~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~ 212 (267)
T 2zu0_C 140 QDLME-EKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL------EPELCILDESDSGLDIDALKVVADGVNSLRD 212 (267)
T ss_dssp HHHHH-HHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHH------CCSEEEEESTTTTCCHHHHHHHHHHHHTTCC
T ss_pred HHHHH-HHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 00000 111111221 12345555 599999999999999999 99999999999999 667777776655
Q ss_pred HhhhHHHHHHHhHHHHHHH-HHHH
Q psy14062 298 EKLTRVQLVETDLKALEPE-LRKA 320 (388)
Q Consensus 298 e~~~~ii~vtH~l~~l~~~-~d~~ 320 (388)
++. +++++||+++.+... ||++
T Consensus 213 ~g~-tviivtHd~~~~~~~~~d~v 235 (267)
T 2zu0_C 213 GKR-SFIIVTHYQRILDYIKPDYV 235 (267)
T ss_dssp SSC-EEEEECSSGGGGGTSCCSEE
T ss_pred cCC-EEEEEeeCHHHHHhhcCCEE
Confidence 444 599999999888765 6654
No 28
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.95 E-value=8.5e-30 Score=238.12 Aligned_cols=193 Identities=14% Similarity=0.133 Sum_probs=131.4
Q ss_pred EEEEEEEeeceEEe-cCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 75 LIITKIVAFNFKSY-AGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 75 l~i~~l~~~~fksy-~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
+.+.+++ ++| ++..+|. +|||+|++ |++++|+||||||||||+++
T Consensus 2 l~~~~l~----~~y~~~~~vl~--------~vsl~i~~----------------------Ge~~~i~G~nGsGKSTLl~~ 47 (243)
T 1mv5_A 2 LSARHVD----FAYDDSEQILR--------DISFEAQP----------------------NSIIAFAGPSGGGKSTIFSL 47 (243)
T ss_dssp EEEEEEE----ECSSSSSCSEE--------EEEEEECT----------------------TEEEEEECCTTSSHHHHHHH
T ss_pred EEEEEEE----EEeCCCCceEE--------EeEEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 4566666 678 5555554 99999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccc-c---cC
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYE-I---IP 229 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~-~---~~ 229 (388)
|+ |++ ++.+|++.++|..+... ..... ++.+++++|++..++ .++.++..+... ......... . ..
T Consensus 48 l~----Gl~-~p~~G~i~~~g~~~~~~--~~~~~-~~~i~~v~q~~~l~~-~tv~enl~~~~~-~~~~~~~~~~~l~~~~ 117 (243)
T 1mv5_A 48 LE----RFY-QPTAGEITIDGQPIDNI--SLENW-RSQIGFVSQDSAIMA-GTIRENLTYGLE-GDYTDEDLWQVLDLAF 117 (243)
T ss_dssp HT----TSS-CCSBSCEEETTEESTTT--SCSCC-TTTCCEECCSSCCCC-EEHHHHTTSCTT-SCSCHHHHHHHHHHHT
T ss_pred Hh----cCC-CCCCcEEEECCEEhhhC--CHHHH-HhhEEEEcCCCcccc-ccHHHHHhhhcc-CCCCHHHHHHHHHHhC
Confidence 99 998 77899988877654311 11122 346999999987664 344332221100 000000000 0 00
Q ss_pred -CceEEEE--EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhh
Q psy14062 230 -GTDLEIA--RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLT 301 (388)
Q Consensus 230 -~~~l~~~--r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~ 301 (388)
...+... +.....+..+..|||||+||++||++|+. +|++|||||||++| +.+.+.+.+++ ++.
T Consensus 118 l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~------~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~- 189 (243)
T 1mv5_A 118 ARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR------NPKILMLDEATASLDSESESMVQKALDSLM-KGR- 189 (243)
T ss_dssp CTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH------CCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTS-
T ss_pred hHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc------CCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCC-
Confidence 0000000 00111234578999999999999999999 99999999999999 77888888876 444
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q psy14062 302 RVQLVETDLKALEPELRKA 320 (388)
Q Consensus 302 ~ii~vtH~l~~l~~~~d~~ 320 (388)
+++++||+++.+. .||++
T Consensus 190 tvi~vtH~~~~~~-~~d~v 207 (243)
T 1mv5_A 190 TTLVIAHRLSTIV-DADKI 207 (243)
T ss_dssp EEEEECCSHHHHH-HCSEE
T ss_pred EEEEEeCChHHHH-hCCEE
Confidence 5999999999875 47764
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.94 E-value=1.2e-30 Score=251.42 Aligned_cols=195 Identities=15% Similarity=0.160 Sum_probs=135.5
Q ss_pred CcEEEEEEEeeceEEec-CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 73 PRLIITKIVAFNFKSYA-GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy~-~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
..+.+.+++ ++|+ +..+|+ ||||+|++ |++++|+||||||||||+
T Consensus 52 ~~i~~~~vs----~~y~~~~~vL~--------~isl~i~~----------------------Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 52 GRIEFENVH----FSYADGRETLQ--------DVSFTVMP----------------------GQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp CCEEEEEEE----EESSTTCEEEE--------EEEEEECT----------------------TCEEEEESSSCHHHHHHH
T ss_pred CeEEEEEEE----EEcCCCCceee--------eeeEEEcC----------------------CCEEEEECCCCchHHHHH
Confidence 357777777 7795 455554 99999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccc-c---
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYE-I--- 227 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~-~--- 227 (388)
++|+ |++ ++.+|++.++|..+.-. ....+| +.+++|||++.+|+ .++.++..+... ........ .
T Consensus 98 ~ll~----gl~-~p~~G~I~i~G~~i~~~--~~~~~r-~~i~~v~Q~~~lf~-~Tv~eNi~~~~~--~~~~~~~~~~~~~ 166 (306)
T 3nh6_A 98 RLLF----RFY-DISSGCIRIDGQDISQV--TQASLR-SHIGVVPQDTVLFN-DTIADNIRYGRV--TAGNDEVEAAAQA 166 (306)
T ss_dssp HHHT----TSS-CCSEEEEEETTEETTSB--CHHHHH-HTEEEECSSCCCCS-EEHHHHHHTTST--TCCHHHHHHHHHH
T ss_pred HHHH----cCC-CCCCcEEEECCEEcccC--CHHHHh-cceEEEecCCccCc-ccHHHHHHhhcc--cCCHHHHHHHHHH
Confidence 9999 988 77899998888765422 223344 56999999988764 344433221100 00000000 0
Q ss_pred cCC-ceEEE--EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 228 IPG-TDLEI--ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 228 ~~~-~~l~~--~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
..- ..+.. .+.....+.....|||||+||++|||+|.. +|++|||||||++| ..+...+.++.+ +
T Consensus 167 ~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~------~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~ 239 (306)
T 3nh6_A 167 AGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK------APGIILLDEATSALDTSNERAIQASLAKVCA-N 239 (306)
T ss_dssp HTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH------CCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-T
T ss_pred hCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh------CCCEEEEECCcccCCHHHHHHHHHHHHHHcC-C
Confidence 000 00000 001112245678999999999999999999 99999999999999 666777777654 3
Q ss_pred hhHHHHHHHhHHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
. ++++|||++..+.. ||++.
T Consensus 240 ~-Tvi~itH~l~~~~~-aD~i~ 259 (306)
T 3nh6_A 240 R-TTIVVAHRLSTVVN-ADQIL 259 (306)
T ss_dssp S-EEEEECCSHHHHHT-CSEEE
T ss_pred C-EEEEEEcChHHHHc-CCEEE
Confidence 3 58999999999876 77653
No 30
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.94 E-value=1.5e-30 Score=243.99 Aligned_cols=177 Identities=18% Similarity=0.160 Sum_probs=130.9
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|+||||+|.+ |++++|+|||||||||||++|+ |++ ++. |++.+.|..+...
T Consensus 16 l~~vsl~i~~----------------------Ge~~~liG~NGsGKSTLlk~l~----Gl~-~p~-G~i~~~g~~~~~~- 66 (249)
T 2qi9_C 16 LGPLSGEVRA----------------------GEILHLVGPNGAGKSTLLARMA----GMT-SGK-GSIQFAGQPLEAW- 66 (249)
T ss_dssp EEEEEEEEET----------------------TCEEEEECCTTSSHHHHHHHHT----TSS-CCE-EEEEETTEEGGGS-
T ss_pred EeeeEEEEcC----------------------CCEEEEECCCCCcHHHHHHHHh----CCC-CCC-eEEEECCEECCcC-
Confidence 4499999999 9999999999999999999999 998 667 9988877654311
Q ss_pred ccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHH
Q psy14062 182 YRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAK 261 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~ 261 (388)
..... ++.++|++|++..++..++.++..+. ...... ...+. ..+...++....++++..|||||+||+.||+
T Consensus 67 -~~~~~-~~~i~~v~q~~~~~~~~tv~e~l~~~-~~~~~~---~~~~~-~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAr 139 (249)
T 2qi9_C 67 -SATKL-ALHRAYLSQQQTPPFATPVWHYLTLH-QHDKTR---TELLN-DVAGALALDDKLGRSTNQLSGGEWQRVRLAA 139 (249)
T ss_dssp -CHHHH-HHHEEEECSCCCCCTTCBHHHHHHTT-CSSTTC---HHHHH-HHHHHTTCGGGTTSBGGGCCHHHHHHHHHHH
T ss_pred -CHHHH-hceEEEECCCCccCCCCcHHHHHHHh-hccCCc---HHHHH-HHHHHcCChhHhcCChhhCCHHHHHHHHHHH
Confidence 11223 34699999998877776765543221 100100 00000 1111122233456789999999999999999
Q ss_pred HHHHcCCCCCCCc-------eEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHH
Q psy14062 262 VLRDHGVDLLNNR-------FLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 262 aL~~~Gi~~~~p~-------~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
+|+. +|+ +|||||||++| +.+...+.++.+++. +++++||+++.+.+.+|++.
T Consensus 140 aL~~------~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~-tviivtHd~~~~~~~~d~v~ 204 (249)
T 2qi9_C 140 VVLQ------ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGL-AIVMSSHDLNHTLRHAHRAW 204 (249)
T ss_dssp HHHH------HCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHCSEEE
T ss_pred HHHc------CCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHhCCEEE
Confidence 9999 999 99999999999 777888888876654 59999999999999888653
No 31
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.94 E-value=1.1e-29 Score=237.89 Aligned_cols=190 Identities=15% Similarity=0.150 Sum_probs=131.5
Q ss_pred EEEEEEEeeceEEe--cCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 75 LIITKIVAFNFKSY--AGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 75 l~i~~l~~~~fksy--~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
+.+.+++ ++| ++..+|. +|||+|++ |++++|+||||||||||++
T Consensus 8 ~~~~~l~----~~y~~~~~~vl~--------~vsl~i~~----------------------Ge~~~i~G~nGsGKSTLl~ 53 (247)
T 2ff7_A 8 ITFRNIR----FRYKPDSPVILD--------NINLSIKQ----------------------GEVIGIVGRSGSGKSTLTK 53 (247)
T ss_dssp EEEEEEE----EESSTTSCEEEE--------EEEEEEET----------------------TCEEEEECSTTSSHHHHHH
T ss_pred eeEEEEE----EEeCCCCcceee--------eeEEEEcC----------------------CCEEEEECCCCCCHHHHHH
Confidence 4455565 789 3456655 99999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cccCCc
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EIIPGT 231 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~~~ 231 (388)
+|+ |++ ++.+|++.++|..+.-. ....+| +.++++||++..++ .++.++..+... ....... ....
T Consensus 54 ~l~----Gl~-~p~~G~I~i~g~~~~~~--~~~~~~-~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~~~~~~~~l~-- 120 (247)
T 2ff7_A 54 LIQ----RFY-IPENGQVLIDGHDLALA--DPNWLR-RQVGVVLQDNVLLN-RSIIDNISLANP--GMSVEKVIYAAK-- 120 (247)
T ss_dssp HHT----TSS-CCSEEEEEETTEETTTS--CHHHHH-HHEEEECSSCCCTT-SBHHHHHTTTCT--TCCHHHHHHHHH--
T ss_pred HHh----cCC-CCCCcEEEECCEEhhhC--CHHHHH-hcEEEEeCCCcccc-ccHHHHHhccCC--CCCHHHHHHHHH--
Confidence 999 998 77899988877654311 112233 46999999987765 355443321110 0000000 0000
Q ss_pred eEEEE--------EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 232 DLEIA--------RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 232 ~l~~~--------r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
.+.+. +.....+..+..|||||+||++||++|+. +|++|||||||++| ..+.+.+.+++ +
T Consensus 121 ~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~------~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~ 193 (247)
T 2ff7_A 121 LAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN------NPKILIFDEATSALDYESEHVIMRNMHKIC-K 193 (247)
T ss_dssp HHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT------CCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T
T ss_pred HhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C
Confidence 00000 01112345578999999999999999999 99999999999999 67777888774 4
Q ss_pred hhhHHHHHHHhHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
+. +++++||+++.++. ||++
T Consensus 194 g~-tviivtH~~~~~~~-~d~v 213 (247)
T 2ff7_A 194 GR-TVIIIAHRLSTVKN-ADRI 213 (247)
T ss_dssp TS-EEEEECSSGGGGTT-SSEE
T ss_pred CC-EEEEEeCCHHHHHh-CCEE
Confidence 44 59999999988764 7754
No 32
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.93 E-value=6.4e-30 Score=253.80 Aligned_cols=188 Identities=16% Similarity=0.173 Sum_probs=128.1
Q ss_pred CcEEEEEEEeeceEEe--cCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 73 PRLIITKIVAFNFKSY--AGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 73 ~~l~i~~l~~~~fksy--~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
..+.+.+++ ++| ++..+| +||||+|++ |++++|+||||||||||
T Consensus 18 ~~i~~~~l~----~~y~~~~~~~L--------~~vsl~i~~----------------------Ge~~~llGpsGsGKSTL 63 (390)
T 3gd7_A 18 GQMTVKDLT----AKYTEGGNAIL--------ENISFSISP----------------------GQRVGLLGRTGSGKSTL 63 (390)
T ss_dssp CCEEEEEEE----EESSSSSCCSE--------EEEEEEECT----------------------TCEEEEEESTTSSHHHH
T ss_pred CeEEEEEEE----EEecCCCeEEe--------eceeEEEcC----------------------CCEEEEECCCCChHHHH
Confidence 357888888 889 455554 499999999 99999999999999999
Q ss_pred HhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCC
Q psy14062 151 IDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPG 230 (388)
Q Consensus 151 l~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~ 230 (388)
|++|+ |++ + .+|++.++|..+.. ......| +.++++||++.+++ .++.++...+ ..... ..+.
T Consensus 64 Lr~ia----Gl~-~-~~G~I~i~G~~i~~--~~~~~~r-r~ig~v~Q~~~lf~-~tv~enl~~~----~~~~~--~~v~- 126 (390)
T 3gd7_A 64 LSAFL----RLL-N-TEGEIQIDGVSWDS--ITLEQWR-KAFGVIPQKVFIFS-GTFRKNLDPN----AAHSD--QEIW- 126 (390)
T ss_dssp HHHHH----TCS-E-EEEEEEESSCBTTS--SCHHHHH-HTEEEESCCCCCCS-EEHHHHHCTT----CCSCH--HHHH-
T ss_pred HHHHh----CCC-C-CCeEEEECCEECCc--CChHHHh-CCEEEEcCCcccCc-cCHHHHhhhc----cccCH--HHHH-
Confidence 99999 988 6 68999888766532 1222233 56999999988775 3433322111 10000 0000
Q ss_pred ceEEEEEEeeeCCCCeee-----------eCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHH
Q psy14062 231 TDLEIARTAFYDNSSYYT-----------LNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDE 294 (388)
Q Consensus 231 ~~l~~~r~~~~~~~~~~~-----------LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~e 294 (388)
..+...++....++.+.. |||||+||++||++|+. +|++||||||+++| .++...+++
T Consensus 127 ~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~------~P~lLLLDEPts~LD~~~~~~l~~~l~~ 200 (390)
T 3gd7_A 127 KVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS------KAKILLLDEPSAHLDPVTYQIIRRTLKQ 200 (390)
T ss_dssp HHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT------TCCEEEEESHHHHSCHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc------CCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 011111111222344444 99999999999999999 99999999999999 455555554
Q ss_pred HHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 295 ERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 295 l~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
+. .+ .+++++||+++.+. .||++
T Consensus 201 ~~-~~-~tvi~vtHd~e~~~-~aDri 223 (390)
T 3gd7_A 201 AF-AD-CTVILCEARIEAML-ECDQF 223 (390)
T ss_dssp TT-TT-SCEEEECSSSGGGT-TCSEE
T ss_pred Hh-CC-CEEEEEEcCHHHHH-hCCEE
Confidence 43 23 35999999986543 36553
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.93 E-value=2.9e-29 Score=236.82 Aligned_cols=192 Identities=13% Similarity=0.194 Sum_probs=130.7
Q ss_pred cEEEEEEEeeceEEecCc---eeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 74 RLIITKIVAFNFKSYAGY---VTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~---~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
++.+.+++ ++|++. .+ |+||||+|++ |++++|+||||||||||
T Consensus 17 ~l~i~~l~----~~y~~~~~~~v--------l~~vsl~i~~----------------------Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 17 NIEFSDVN----FSYPKQTNHRT--------LKSINFFIPS----------------------GTTCALVGHTGSGKSTI 62 (260)
T ss_dssp CEEEEEEE----ECCTTCCSSCS--------EEEEEEEECT----------------------TCEEEEECSTTSSHHHH
T ss_pred eEEEEEEE----EEeCCCCcCce--------eEeeEEEECC----------------------CCEEEEECCCCCCHHHH
Confidence 57777777 789753 34 4599999999 99999999999999999
Q ss_pred HhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cccC
Q psy14062 151 IDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EIIP 229 (388)
Q Consensus 151 l~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~ 229 (388)
+++|+ |++ ++ +|++.++|..+... ..... ++.++|++|++..++ .++.++..+. .. ....... ....
T Consensus 63 l~~l~----Gl~-~~-~G~I~i~g~~i~~~--~~~~~-~~~i~~v~Q~~~l~~-~tv~enl~~~-~~-~~~~~~~~~~l~ 130 (260)
T 2ghi_A 63 AKLLY----RFY-DA-EGDIKIGGKNVNKY--NRNSI-RSIIGIVPQDTILFN-ETIKYNILYG-KL-DATDEEVIKATK 130 (260)
T ss_dssp HHHHT----TSS-CC-EEEEEETTEEGGGB--CHHHH-HTTEEEECSSCCCCS-EEHHHHHHTT-CT-TCCHHHHHHHHH
T ss_pred HHHHh----ccC-CC-CeEEEECCEEhhhc--CHHHH-hccEEEEcCCCcccc-cCHHHHHhcc-CC-CCCHHHHHHHHH
Confidence 99999 988 65 89988877655321 11223 356999999987764 3443332111 00 0000000 0000
Q ss_pred C-ceEEEE-EE----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 230 G-TDLEIA-RT----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 230 ~-~~l~~~-r~----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
. ...... +. ....++.+..|||||+||+.||++|+. +|++|||||||++| ..+...+.++++
T Consensus 131 ~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~------~p~lllLDEPts~LD~~~~~~i~~~l~~l~~- 203 (260)
T 2ghi_A 131 SAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK------DPKIVIFDEATSSLDSKTEYLFQKAVEDLRK- 203 (260)
T ss_dssp HTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH------CCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-
T ss_pred HhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc------CCCEEEEECccccCCHHHHHHHHHHHHHhcC-
Confidence 0 000000 00 001235678999999999999999999 99999999999999 667777777754
Q ss_pred hhhHHHHHHHhHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
+. +++++||+++.+.. ||++
T Consensus 204 ~~-tviivtH~~~~~~~-~d~i 223 (260)
T 2ghi_A 204 NR-TLIIIAHRLSTISS-AESI 223 (260)
T ss_dssp TS-EEEEECSSGGGSTT-CSEE
T ss_pred CC-EEEEEcCCHHHHHh-CCEE
Confidence 44 59999999988754 7764
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.92 E-value=3.7e-29 Score=231.76 Aligned_cols=179 Identities=16% Similarity=0.214 Sum_probs=120.6
Q ss_pred cEEEEEEEeeceEEec--CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKIVAFNFKSYA--GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~--~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
++.+.+++ ++|+ ++.+| ++|||+|++ |++++|+||||||||||+
T Consensus 6 ~l~~~~l~----~~y~~~~~~il--------~~vsl~i~~----------------------Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 6 EVVMENVT----AFWEEGGTPVL--------KDINFKIER----------------------GQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp EEEEEEEE----ECSSTTSCCSE--------EEEEEEEET----------------------TCEEEEECCTTSSHHHHH
T ss_pred eEEEEEEE----EEeCCCCceee--------eeeEEEEcC----------------------CCEEEEECCCCCCHHHHH
Confidence 45566666 6785 34554 499999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccc-ccCC
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYE-IIPG 230 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~-~~~~ 230 (388)
++|+ |++ ++.+|++.+.| .++|++|++..++. ++.++..+... ....... ....
T Consensus 52 ~~l~----Gl~-~p~~G~i~~~g----------------~i~~v~q~~~~~~~-tv~enl~~~~~---~~~~~~~~~~~~ 106 (229)
T 2pze_A 52 MMIM----GEL-EPSEGKIKHSG----------------RISFCSQFSWIMPG-TIKENIIFGVS---YDEYRYRSVIKA 106 (229)
T ss_dssp HHHT----TSS-CCSEEEEEECS----------------CEEEECSSCCCCSB-CHHHHHHTTSC---CCHHHHHHHHHH
T ss_pred HHHh----CCC-cCCccEEEECC----------------EEEEEecCCcccCC-CHHHHhhccCC---cChHHHHHHHHH
Confidence 9999 998 77899976654 38999999877653 54443221100 0000000 0000
Q ss_pred -ceEEE-EEEe----eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhh-hHHHHHH
Q psy14062 231 -TDLEI-ARTA----FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGK-YDEERTE 298 (388)
Q Consensus 231 -~~l~~-~r~~----~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~-l~el~~e 298 (388)
..... .+.. ...+.....|||||+||+.||++|+. +|+++||||||++| +.+... +.++. +
T Consensus 107 ~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~------~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~ 179 (229)
T 2pze_A 107 CQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK------DADLYLLDSPFGYLDVLTEKEIFESCVCKLM-A 179 (229)
T ss_dssp TTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHS------CCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-T
T ss_pred hCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhc------CCCEEEEECcccCCCHHHHHHHHHHHHHHhh-C
Confidence 00000 0000 01133467999999999999999999 99999999999999 444443 23332 2
Q ss_pred hhhHHHHHHHhHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
+. +++++||+++.+. .||++
T Consensus 180 ~~-tvi~vtH~~~~~~-~~d~v 199 (229)
T 2pze_A 180 NK-TRILVTSKMEHLK-KADKI 199 (229)
T ss_dssp TS-EEEEECCCHHHHH-HCSEE
T ss_pred CC-EEEEEcCChHHHH-hCCEE
Confidence 33 5999999998875 47654
No 35
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.92 E-value=6.6e-29 Score=234.62 Aligned_cols=183 Identities=19% Similarity=0.243 Sum_probs=129.4
Q ss_pred EEEEEEEeeceEEecC----ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhH
Q psy14062 75 LIITKIVAFNFKSYAG----YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNV 150 (388)
Q Consensus 75 l~i~~l~~~~fksy~~----~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTL 150 (388)
+.+.+++ ++|++ +.+|+ +|||+|+ | ++++|+||||||||||
T Consensus 2 l~~~~l~----~~y~~~~~~~~il~--------~vsl~i~-G----------------------e~~~i~G~NGsGKSTL 46 (263)
T 2pjz_A 2 IQLKNVG----ITLSGKGYERFSLE--------NINLEVN-G----------------------EKVIILGPNGSGKTTL 46 (263)
T ss_dssp EEEEEEE----EEEEEETTEEEEEE--------EEEEEEC-S----------------------SEEEEECCTTSSHHHH
T ss_pred EEEEEEE----EEeCCCCccceeEE--------eeeEEEC-C----------------------EEEEEECCCCCCHHHH
Confidence 4566676 77976 56655 9999987 6 7999999999999999
Q ss_pred HhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccce-eEecccCCCCCcceEEEEEEeccccCCCCccccccC
Q psy14062 151 IDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLS-VLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIP 229 (388)
Q Consensus 151 l~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~-~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~ 229 (388)
|++|+ |++ | .+|++.+.|..+.-. . . ++.++ +++|++.. ..++.++..++......... .+.
T Consensus 47 lk~l~----Gl~-p-~~G~I~~~g~~~~~~----~-~-~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~~~~~---~~~ 109 (263)
T 2pjz_A 47 LRAIS----GLL-P-YSGNIFINGMEVRKI----R-N-YIRYSTNLPEAYEI--GVTVNDIVYLYEELKGLDRD---LFL 109 (263)
T ss_dssp HHHHT----TSS-C-CEEEEEETTEEGGGC----S-C-CTTEEECCGGGSCT--TSBHHHHHHHHHHHTCCCHH---HHH
T ss_pred HHHHh----CCC-C-CCcEEEECCEECcch----H-H-hhheEEEeCCCCcc--CCcHHHHHHHhhhhcchHHH---HHH
Confidence 99999 998 5 599988877654321 1 1 34699 99999766 45554433222111111100 000
Q ss_pred CceEEEEEEe-eeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHH
Q psy14062 230 GTDLEIARTA-FYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRV 303 (388)
Q Consensus 230 ~~~l~~~r~~-~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~i 303 (388)
..+...++. ...++++..|||||+||+.||++|+. +|+++||||||++| +.+.+.+.++++ ++
T Consensus 110 -~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~------~p~lllLDEPts~LD~~~~~~l~~~L~~~~~----tv 178 (263)
T 2pjz_A 110 -EMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALAS------QPEIVGLDEPFENVDAARRHVISRYIKEYGK----EG 178 (263)
T ss_dssp -HHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHT------CCSEEEEECTTTTCCHHHHHHHHHHHHHSCS----EE
T ss_pred -HHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHh------CCCEEEEECCccccCHHHHHHHHHHHHHhcC----cE
Confidence 011111222 33467889999999999999999999 99999999999999 555556655433 59
Q ss_pred HHHHHhHHHHHHHHH-HH
Q psy14062 304 QLVETDLKALEPELR-KA 320 (388)
Q Consensus 304 i~vtH~l~~l~~~~d-~~ 320 (388)
+++||+++.+.+.|| ++
T Consensus 179 iivtHd~~~~~~~~d~~i 196 (263)
T 2pjz_A 179 ILVTHELDMLNLYKEYKA 196 (263)
T ss_dssp EEEESCGGGGGGCTTSEE
T ss_pred EEEEcCHHHHHHhcCceE
Confidence 999999998888777 54
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.92 E-value=4.3e-29 Score=232.54 Aligned_cols=179 Identities=15% Similarity=0.182 Sum_probs=120.9
Q ss_pred cEEEEEEEeeceEEec--CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKIVAFNFKSYA--GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~--~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
++.+.+++ ++|+ +..+| ++|||+|++ |++++|+||||||||||+
T Consensus 3 ~l~~~~l~----~~y~~~~~~vl--------~~vsl~i~~----------------------Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 3 SITVRNAT----FTWARSDPPTL--------NGITFSIPE----------------------GALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp CEEEEEEE----EESCTTSCCSE--------EEEEEEECT----------------------TCEEEEECSTTSSHHHHH
T ss_pred eEEEEEEE----EEeCCCCCcee--------eeeEEEECC----------------------CCEEEEECCCCCCHHHHH
Confidence 35666776 7797 34554 499999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccccc-C-
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEII-P- 229 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~-~- 229 (388)
++|+ |++ ++.+|++.+.| .+++++|++.. +..++.++..+.... ........ .
T Consensus 49 ~~l~----Gl~-~p~~G~I~~~g----------------~i~~v~Q~~~~-~~~tv~enl~~~~~~---~~~~~~~~~~~ 103 (237)
T 2cbz_A 49 SALL----AEM-DKVEGHVAIKG----------------SVAYVPQQAWI-QNDSLRENILFGCQL---EEPYYRSVIQA 103 (237)
T ss_dssp HHHT----TCS-EEEEEEEEECS----------------CEEEECSSCCC-CSEEHHHHHHTTSCC---CTTHHHHHHHH
T ss_pred HHHh----cCC-CCCCceEEECC----------------EEEEEcCCCcC-CCcCHHHHhhCcccc---CHHHHHHHHHH
Confidence 9999 998 67799976654 38999998754 344433322211100 01100000 0
Q ss_pred CceEEEEEE-----eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhH---HHH
Q psy14062 230 GTDLEIART-----AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYD---EER 296 (388)
Q Consensus 230 ~~~l~~~r~-----~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~---el~ 296 (388)
......... ....++++..|||||+||+.||++|+. +|+++||||||++| ..+...+. ++.
T Consensus 104 ~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~------~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~ 177 (237)
T 2cbz_A 104 CALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS------NADIYLFDDPLSAVDAHVGKHIFENVIGPKGML 177 (237)
T ss_dssp TTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHH------CCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT
T ss_pred HhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc
Confidence 000000000 001246788999999999999999999 99999999999999 44555552 222
Q ss_pred HHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 297 TEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 297 ~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
++. +++++||+++.+. .||++
T Consensus 178 -~~~-tviivtH~~~~~~-~~d~v 198 (237)
T 2cbz_A 178 -KNK-TRILVTHSMSYLP-QVDVI 198 (237)
T ss_dssp -TTS-EEEEECSCSTTGG-GSSEE
T ss_pred -CCC-EEEEEecChHHHH-hCCEE
Confidence 333 5999999998775 57754
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.91 E-value=1.2e-26 Score=242.29 Aligned_cols=196 Identities=16% Similarity=0.217 Sum_probs=135.9
Q ss_pred cEEEEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
.+.+.+++ ++|++ +.+ |+|+||+|++ |++++|+||||||||||+
T Consensus 341 ~i~~~~v~----~~y~~~~~~~--------l~~i~l~i~~----------------------G~~~~ivG~sGsGKSTll 386 (582)
T 3b5x_A 341 EVDVKDVT----FTYQGKEKPA--------LSHVSFSIPQ----------------------GKTVALVGRSGSGKSTIA 386 (582)
T ss_pred eEEEEEEE----EEcCCCCccc--------cccceEEECC----------------------CCEEEEECCCCCCHHHHH
Confidence 46677776 67974 445 4599999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccc-ccCC
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYE-IIPG 230 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~-~~~~ 230 (388)
++|+ |++ ++.+|++.++|.++.-. +...+| +.+++++|++..++. +..++..+... .+....... ....
T Consensus 387 ~~l~----g~~-~p~~G~i~~~g~~~~~~--~~~~~~-~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~~~~~~~~~~ 456 (582)
T 3b5x_A 387 NLFT----RFY-DVDSGSICLDGHDVRDY--KLTNLR-RHFALVSQNVHLFND-TIANNIAYAAE-GEYTREQIEQAARQ 456 (582)
T ss_pred HHHh----cCC-CCCCCEEEECCEEhhhC--CHHHHh-cCeEEEcCCCccccc-cHHHHHhccCC-CCCCHHHHHHHHHH
Confidence 9999 998 77899998888665321 222333 569999999988764 55544332210 011111000 0000
Q ss_pred ----ceEEE--EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 231 ----TDLEI--ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 231 ----~~l~~--~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
..+.. .+.....+.....|||||+||++|||+|.. +|+++||||||++| ..+.+.+.++.+ +
T Consensus 457 ~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~ 529 (582)
T 3b5x_A 457 AHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR------DAPVLILDEATSALDTESERAIQAALDELQK-N 529 (582)
T ss_pred CCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc------CCCEEEEECccccCCHHHHHHHHHHHHHHcC-C
Confidence 00000 011112345678999999999999999999 99999999999999 566667777654 4
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKAVN 322 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~~~ 322 (388)
. +++++||+++.++ .||++..
T Consensus 530 ~-tvi~itH~~~~~~-~~d~i~~ 550 (582)
T 3b5x_A 530 K-TVLVIAHRLSTIE-QADEILV 550 (582)
T ss_pred C-EEEEEecCHHHHH-hCCEEEE
Confidence 4 5999999999886 5887543
No 38
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=3.8e-27 Score=246.29 Aligned_cols=193 Identities=12% Similarity=0.146 Sum_probs=133.2
Q ss_pred cEEEEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
.+.+++++ ++|++ ..+ |+||||+|++ |++++|+||||||||||+
T Consensus 341 ~i~~~~v~----~~y~~~~~~~--------l~~isl~i~~----------------------Ge~~~ivG~sGsGKSTll 386 (587)
T 3qf4_A 341 SVSFENVE----FRYFENTDPV--------LSGVNFSVKP----------------------GSLVAVLGETGSGKSTLM 386 (587)
T ss_dssp CEEEEEEE----ECSSSSSCCS--------EEEEEEEECT----------------------TCEEEEECSSSSSHHHHH
T ss_pred cEEEEEEE----EEcCCCCCcc--------eeceEEEEcC----------------------CCEEEEECCCCCCHHHHH
Confidence 57777777 77853 344 4599999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-ccc--
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EII-- 228 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~~-- 228 (388)
++|+ |++ ++.+|++.++|.++.-. +...+| +.+++++|++..++. +..++...... ....... ...
T Consensus 387 ~~l~----g~~-~~~~G~i~i~g~~i~~~--~~~~~r-~~i~~v~Q~~~lf~~-tv~eni~~~~~--~~~~~~~~~~~~~ 455 (587)
T 3qf4_A 387 NLIP----RLI-DPERGRVEVDELDVRTV--KLKDLR-GHISAVPQETVLFSG-TIKENLKWGRE--DATDDEIVEAAKI 455 (587)
T ss_dssp HTTT----TSS-CCSEEEEEESSSBGGGB--CHHHHH-HHEEEECSSCCCCSE-EHHHHHTTTCS--SCCHHHHHHHHHH
T ss_pred HHHh----CCc-cCCCcEEEECCEEcccC--CHHHHH-hheEEECCCCcCcCc-cHHHHHhccCC--CCCHHHHHHHHHH
Confidence 9999 988 77899999988766432 223344 459999999887753 44333211100 0000000 000
Q ss_pred CC--ceEE-E-EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 229 PG--TDLE-I-ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 229 ~~--~~l~-~-~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
.. ..+. + .+.....++....|||||+||++|||+|.. +|+++||||||++| ..+.+.++++.+ +
T Consensus 456 ~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~ 528 (587)
T 3qf4_A 456 AQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK------KPKVLILDDCTSSVDPITEKRILDGLKRYTK-G 528 (587)
T ss_dssp TTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT------CCSEEEEESCCTTSCHHHHHHHHHHHHHHST-T
T ss_pred hCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc------CCCEEEEECCcccCCHHHHHHHHHHHHHhCC-C
Confidence 00 0000 0 011112256678999999999999999999 99999999999999 556666666543 4
Q ss_pred hhHHHHHHHhHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~ 320 (388)
. +++++||+++.+. .||++
T Consensus 529 ~-tvi~itH~l~~~~-~~d~i 547 (587)
T 3qf4_A 529 C-TTFIITQKIPTAL-LADKI 547 (587)
T ss_dssp C-EEEEEESCHHHHT-TSSEE
T ss_pred C-EEEEEecChHHHH-hCCEE
Confidence 4 5999999999875 67765
No 39
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.90 E-value=1.1e-25 Score=235.81 Aligned_cols=194 Identities=18% Similarity=0.205 Sum_probs=133.6
Q ss_pred EEEEEEEeeceEEecCc---eeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 75 LIITKIVAFNFKSYAGY---VTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~---~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
+.+++++ ++|++. .+| +||||+|++ |++++|+||||||||||+
T Consensus 342 i~~~~v~----~~y~~~~~~~vl--------~~isl~i~~----------------------G~~~~ivG~sGsGKSTLl 387 (595)
T 2yl4_A 342 LEFKNVH----FAYPARPEVPIF--------QDFSLSIPS----------------------GSVTALVGPSGSGKSTVL 387 (595)
T ss_dssp EEEEEEE----EECSSCTTSEEE--------EEEEEEECT----------------------TCEEEEECCTTSSSTHHH
T ss_pred EEEEEEE----EEeCCCCCCccc--------cceEEEEcC----------------------CCEEEEECCCCCCHHHHH
Confidence 7777777 779742 454 499999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEecccc-CCCCcccc-ccC
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQII-DKPNEEYE-IIP 229 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~-~~~~~~~~-~~~ 229 (388)
++|+ |++ ++.+|++.++|..+.-. +...+| +.+++++|++..++. +..++........ ........ ...
T Consensus 388 ~~l~----g~~-~p~~G~i~~~g~~i~~~--~~~~~~-~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~ 458 (595)
T 2yl4_A 388 SLLL----RLY-DPASGTISLDGHDIRQL--NPVWLR-SKIGTVSQEPILFSC-SIAENIAYGADDPSSVTAEEIQRVAE 458 (595)
T ss_dssp HHHT----TSS-CCSEEEEEETTEETTTB--CHHHHH-HSEEEECSSCCCCSS-BHHHHHHTTSSSTTTSCHHHHHHHHH
T ss_pred HHHh----cCc-CCCCcEEEECCEEhhhC--CHHHHH-hceEEEccCCcccCC-CHHHHHhhcCCCccccCHHHHHHHHH
Confidence 9999 988 77899998887655321 222344 469999999988754 5544332211100 00100000 000
Q ss_pred CceE-E-EE----EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 230 GTDL-E-IA----RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 230 ~~~l-~-~~----r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
...+ . +. +.....+.....|||||+||++|||+|.. +|+++||||||++| ..+.+.+.++.+
T Consensus 459 ~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~------~p~illlDEpts~LD~~~~~~i~~~l~~~~~- 531 (595)
T 2yl4_A 459 VANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK------NPKILLLDEATSALDAENEYLVQEALDRLMD- 531 (595)
T ss_dssp HTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHH------CCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-
T ss_pred HcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHc------CCCEEEEECcccCCCHHHHHHHHHHHHHHhc-
Confidence 0000 0 00 00111234568899999999999999999 99999999999999 566677777665
Q ss_pred hhhHHHHHHHhHHHHHHHHHHH
Q psy14062 299 KLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
+. +++++||+++.++ .||++
T Consensus 532 ~~-tvi~itH~~~~~~-~~d~i 551 (595)
T 2yl4_A 532 GR-TVLVIAHRLSTIK-NANMV 551 (595)
T ss_dssp TS-EEEEECCCHHHHH-HSSEE
T ss_pred CC-EEEEEecCHHHHH-cCCEE
Confidence 44 5999999999875 47764
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.90 E-value=3.1e-26 Score=239.00 Aligned_cols=193 Identities=17% Similarity=0.185 Sum_probs=132.5
Q ss_pred cEEEEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
.+.+.+++ ++|++ ..+ |+||||+|++ |++++|+||||||||||+
T Consensus 339 ~i~~~~v~----~~y~~~~~~~--------l~~isl~i~~----------------------G~~~~ivG~sGsGKSTll 384 (578)
T 4a82_A 339 RIDIDHVS----FQYNDNEAPI--------LKDINLSIEK----------------------GETVAFVGMSGGGKSTLI 384 (578)
T ss_dssp CEEEEEEE----ECSCSSSCCS--------EEEEEEEECT----------------------TCEEEEECSTTSSHHHHH
T ss_pred eEEEEEEE----EEcCCCCCcc--------eeeeEEEECC----------------------CCEEEEECCCCChHHHHH
Confidence 57777777 77864 234 4599999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cc---
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EI--- 227 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~--- 227 (388)
++|+ |++ ++.+|++.++|.++.-. +...+| +.+++++|++..++. +..++...... ....... +.
T Consensus 385 ~~l~----g~~-~p~~G~i~~~g~~~~~~--~~~~~r-~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~ 453 (578)
T 4a82_A 385 NLIP----RFY-DVTSGQILIDGHNIKDF--LTGSLR-NQIGLVQQDNILFSD-TVKENILLGRP--TATDEEVVEAAKM 453 (578)
T ss_dssp TTTT----TSS-CCSEEEEEETTEEGGGS--CHHHHH-HTEEEECSSCCCCSS-BHHHHHGGGCS--SCCHHHHHHHHHH
T ss_pred HHHh----cCC-CCCCcEEEECCEEhhhC--CHHHHh-hheEEEeCCCccCcc-cHHHHHhcCCC--CCCHHHHHHHHHH
Confidence 9999 988 77899998888766422 222344 569999999988765 55443321100 0000000 00
Q ss_pred cCC-ceEE-E-EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 228 IPG-TDLE-I-ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 228 ~~~-~~l~-~-~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
... ..+. + .+.....+.....|||||+||++|||+|.. +|+++||||||++| ..+.+.+.++.+ +
T Consensus 454 ~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~ 526 (578)
T 4a82_A 454 ANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN------NPPILILDEATSALDLESESIIQEALDVLSK-D 526 (578)
T ss_dssp TTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH------CCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-T
T ss_pred hCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc------CCCEEEEECccccCCHHHHHHHHHHHHHHcC-C
Confidence 000 0000 0 001112245567899999999999999999 99999999999999 455556666543 3
Q ss_pred hhHHHHHHHhHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~ 320 (388)
. +++++||+++.++. ||++
T Consensus 527 ~-t~i~itH~l~~~~~-~d~i 545 (578)
T 4a82_A 527 R-TTLIVAHRLSTITH-ADKI 545 (578)
T ss_dssp S-EEEEECSSGGGTTT-CSEE
T ss_pred C-EEEEEecCHHHHHc-CCEE
Confidence 3 58999999998754 7664
No 41
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=3.9e-26 Score=239.14 Aligned_cols=193 Identities=13% Similarity=0.154 Sum_probs=132.9
Q ss_pred cEEEEEEEeeceEEecC-ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSYAG-YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~-~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
.+.+++++ ++|++ ..+ |+||||+|++ |++++|+||||||||||++
T Consensus 354 ~i~~~~v~----~~y~~~~~~--------l~~isl~i~~----------------------G~~~~ivG~sGsGKSTll~ 399 (598)
T 3qf4_B 354 EIEFKNVW----FSYDKKKPV--------LKDITFHIKP----------------------GQKVALVGPTGSGKTTIVN 399 (598)
T ss_dssp CEEEEEEE----CCSSSSSCS--------CCSEEEECCT----------------------TCEEEEECCTTSSTTHHHH
T ss_pred eEEEEEEE----EECCCCCcc--------ccceEEEEcC----------------------CCEEEEECCCCCcHHHHHH
Confidence 57777777 67864 334 4599999999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cccCCc
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EIIPGT 231 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~~~ 231 (388)
+|+ |++ ++.+|++.++|.++.-. +...+| +.+++++|++..++. +..++...... +..+... +.....
T Consensus 400 ~l~----g~~-~p~~G~i~~~g~~i~~~--~~~~~r-~~i~~v~Q~~~lf~~-tv~eni~~~~~--~~~~~~~~~~~~~~ 468 (598)
T 3qf4_B 400 LLM----RFY-DVDRGQILVDGIDIRKI--KRSSLR-SSIGIVLQDTILFST-TVKENLKYGNP--GATDEEIKEAAKLT 468 (598)
T ss_dssp HHT----TSS-CCSEEEEEETTEEGGGS--CHHHHH-HHEEEECTTCCCCSS-BHHHHHHSSST--TCCTTHHHHHTTTT
T ss_pred HHh----cCc-CCCCeEEEECCEEhhhC--CHHHHH-hceEEEeCCCccccc-cHHHHHhcCCC--CCCHHHHHHHHHHh
Confidence 999 988 77899998888766432 222344 469999999988754 54443321110 0111110 000000
Q ss_pred eEE--EE----EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhh
Q psy14062 232 DLE--IA----RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKL 300 (388)
Q Consensus 232 ~l~--~~----r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~ 300 (388)
.+. +. +.....+.....|||||+||++|||+|.. +|+++||||||++| ..+.+.+.++.+ +.
T Consensus 469 ~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~ 541 (598)
T 3qf4_B 469 HSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA------NPKILILDEATSNVDTKTEKSIQAAMWKLME-GK 541 (598)
T ss_dssp TCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHT------CCSEEEECCCCTTCCHHHHHHHHHHHHHHHT-TS
T ss_pred CCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEECCccCCCHHHHHHHHHHHHHHcC-CC
Confidence 000 00 00001123346899999999999999999 99999999999999 566667777653 44
Q ss_pred hHHHHHHHhHHHHHHHHHHH
Q psy14062 301 TRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 301 ~~ii~vtH~l~~l~~~~d~~ 320 (388)
+++++||+++.++. ||++
T Consensus 542 -t~i~itH~l~~~~~-~d~i 559 (598)
T 3qf4_B 542 -TSIIIAHRLNTIKN-ADLI 559 (598)
T ss_dssp -EEEEESCCTTHHHH-CSEE
T ss_pred -EEEEEecCHHHHHc-CCEE
Confidence 59999999998865 7765
No 42
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.90 E-value=2e-26 Score=237.93 Aligned_cols=186 Identities=15% Similarity=0.125 Sum_probs=130.6
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.+++ ++|++.. + ..+||+|.+ |++++|+||||||||||+++
T Consensus 269 ~l~~~~l~----~~~~~~~-l--------~~~~~~i~~----------------------Gei~~i~G~nGsGKSTLl~~ 313 (538)
T 3ozx_A 269 KMKWTKII----KKLGDFQ-L--------VVDNGEAKE----------------------GEIIGILGPNGIGKTTFARI 313 (538)
T ss_dssp EEEECCEE----EEETTEE-E--------EECCEEEET----------------------TCEEEEECCTTSSHHHHHHH
T ss_pred eEEEcceE----EEECCEE-E--------EeccceECC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 45555555 7787632 2 377899999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceE
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l 233 (388)
|+ |++ ++.+|++.+.+ ..+++++|.....+..++.++.............. ... ..+
T Consensus 314 l~----Gl~-~p~~G~i~~~~---------------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~--~~~-~~l 370 (538)
T 3ozx_A 314 LV----GEI-TADEGSVTPEK---------------QILSYKPQRIFPNYDGTVQQYLENASKDALSTSSW--FFE-EVT 370 (538)
T ss_dssp HT----TSS-CCSBCCEESSC---------------CCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSH--HHH-HTT
T ss_pred Hh----CCC-CCCCcEEEECC---------------eeeEeechhcccccCCCHHHHHHHhhhhccchhHH--HHH-HHH
Confidence 99 998 77899965421 34788888755433334332211110000000000 000 011
Q ss_pred EEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 234 ~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH 308 (388)
...++....++++..|||||+||+.||++|+. +|++|||||||++| .++..+++++.++...++++|||
T Consensus 371 ~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~------~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsH 444 (538)
T 3ozx_A 371 KRLNLHRLLESNVNDLSGGELQKLYIAATLAK------EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444 (538)
T ss_dssp TTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHS------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHcCCHHHhcCChhhCCHHHHHHHHHHHHHHc------CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 11122234578899999999999999999999 99999999999999 77888888887664446999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy14062 309 DLKALEPELRKAVNF 323 (388)
Q Consensus 309 ~l~~l~~~~d~~~~y 323 (388)
|++.+..+||++.-+
T Consensus 445 dl~~~~~~aDri~vl 459 (538)
T 3ozx_A 445 DLSIHDYIADRIIVF 459 (538)
T ss_dssp CHHHHHHHCSEEEEE
T ss_pred CHHHHHHhCCEEEEE
Confidence 999999999986443
No 43
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.89 E-value=6e-26 Score=234.68 Aligned_cols=183 Identities=16% Similarity=0.151 Sum_probs=132.0
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.+++ ++|++. .+ +++||+|.+ |++++|+||||||||||+++
T Consensus 287 ~l~~~~l~----~~~~~~-~l--------~~~~~~i~~----------------------Ge~~~i~G~NGsGKSTLlk~ 331 (538)
T 1yqt_A 287 LVTYPRLV----KDYGSF-RL--------EVEPGEIKK----------------------GEVIGIVGPNGIGKTTFVKM 331 (538)
T ss_dssp EEEECCEE----EEETTE-EE--------EECCEEEET----------------------TCEEEEECCTTSSHHHHHHH
T ss_pred EEEEeeEE----EEECCE-EE--------EeCccccCC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 45555555 678763 33 389999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEe-ccccCCCCccccccCCce
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHF-AQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~-~~~~~~~~~~~~~~~~~~ 232 (388)
|+ |++ ++.+|++.+ ...++|++|++...+..++.++...+ ..... ....... .
T Consensus 332 l~----Gl~-~p~~G~i~~----------------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~----~ 385 (538)
T 1yqt_A 332 LA----GVE-EPTEGKIEW----------------DLTVAYKPQYIKADYEGTVYELLSKIDASKLN-SNFYKTE----L 385 (538)
T ss_dssp HH----TSS-CCSBCCCCC----------------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHT-CHHHHHH----T
T ss_pred Hh----CCC-CCCCeEEEE----------------CceEEEEecCCcCCCCCcHHHHHHhhhccCCC-HHHHHHH----H
Confidence 99 998 777999653 12589999987665555553322111 00000 0000000 1
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++....++++..|||||+||+.||++|+. +|++|||||||++| +.+...+.++.++...+|+++|
T Consensus 386 l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~------~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vs 459 (538)
T 1yqt_A 386 LKPLGIIDLYDREVNELSGGELQRVAIAATLLR------DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 459 (538)
T ss_dssp TTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTS------CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHcCChhhhcCChhhCCHHHHHHHHHHHHHHh------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 111122234578899999999999999999999 99999999999999 7788888887654333599999
Q ss_pred HhHHHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAVNF 323 (388)
Q Consensus 308 H~l~~l~~~~d~~~~y 323 (388)
||++.+...||++..+
T Consensus 460 Hd~~~~~~~~drv~vl 475 (538)
T 1yqt_A 460 HDVLMIDYVSDRLMVF 475 (538)
T ss_dssp SCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHhCCEEEEE
Confidence 9999999999876433
No 44
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.89 E-value=4.5e-26 Score=238.01 Aligned_cols=194 Identities=16% Similarity=0.214 Sum_probs=134.1
Q ss_pred cEEEEEEEeeceEEecC--ceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKIVAFNFKSYAG--YVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~--~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
.+.+.+++ ++|++ +.++ +||||+|++ |++++|+||||||||||+
T Consensus 341 ~i~~~~v~----~~y~~~~~~~l--------~~v~~~i~~----------------------G~~~~ivG~sGsGKSTLl 386 (582)
T 3b60_A 341 DLEFRNVT----FTYPGREVPAL--------RNINLKIPA----------------------GKTVALVGRSGSGKSTIA 386 (582)
T ss_dssp CEEEEEEE----ECSSSSSCCSE--------EEEEEEECT----------------------TCEEEEEECTTSSHHHHH
T ss_pred cEEEEEEE----EEcCCCCCccc--------cceeEEEcC----------------------CCEEEEECCCCCCHHHHH
Confidence 57777777 77974 4454 499999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cccCC
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EIIPG 230 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~~ 230 (388)
++|+ |++ ++.+|++.++|.++.-. +...+| +.+++++|++..++. +..++..... ..+...... +....
T Consensus 387 ~~l~----g~~-~p~~G~i~~~g~~~~~~--~~~~~~-~~i~~v~Q~~~l~~~-tv~eni~~~~-~~~~~~~~~~~~l~~ 456 (582)
T 3b60_A 387 SLIT----RFY-DIDEGHILMDGHDLREY--TLASLR-NQVALVSQNVHLFND-TVANNIAYAR-TEEYSREQIEEAARM 456 (582)
T ss_dssp HHHT----TTT-CCSEEEEEETTEETTTB--CHHHHH-HTEEEECSSCCCCSS-BHHHHHHTTT-TSCCCHHHHHHHHHT
T ss_pred HHHh----hcc-CCCCCeEEECCEEcccc--CHHHHH-hhCeEEccCCcCCCC-CHHHHHhccC-CCCCCHHHHHHHHHH
Confidence 9999 888 77899998887655321 222344 469999999988764 5544332211 001111100 00000
Q ss_pred ceE-E-EE----EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh
Q psy14062 231 TDL-E-IA----RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK 299 (388)
Q Consensus 231 ~~l-~-~~----r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~ 299 (388)
..+ . +. +.....+.....|||||+||++|||+|.. +|+++||||||++| +.+.+.+.++.+ +
T Consensus 457 ~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~ 529 (582)
T 3b60_A 457 AYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR------DSPILILDEATSALDTESERAIQAALDELQK-N 529 (582)
T ss_dssp TTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH------CCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-T
T ss_pred cCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh------CCCEEEEECccccCCHHHHHHHHHHHHHHhC-C
Confidence 000 0 00 01112345678999999999999999999 99999999999999 566777777654 4
Q ss_pred hhHHHHHHHhHHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~~ 320 (388)
. +++++||+++.++ .||++
T Consensus 530 ~-tvi~itH~~~~~~-~~d~i 548 (582)
T 3b60_A 530 R-TSLVIAHRLSTIE-QADEI 548 (582)
T ss_dssp S-EEEEECSCGGGTT-TCSEE
T ss_pred C-EEEEEeccHHHHH-hCCEE
Confidence 4 5999999998775 47654
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.89 E-value=2.8e-26 Score=239.86 Aligned_cols=183 Identities=15% Similarity=0.150 Sum_probs=132.5
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.+++ ++|++. . |+++||+|.+ |++++|+|||||||||||++
T Consensus 357 ~l~~~~l~----~~~~~~-~--------l~~~~~~v~~----------------------Gei~~i~G~NGsGKSTLlk~ 401 (607)
T 3bk7_A 357 LVEYPRLV----KDYGSF-K--------LEVEPGEIRK----------------------GEVIGIVGPNGIGKTTFVKM 401 (607)
T ss_dssp EEEECCEE----EECSSC-E--------EEECCEEEET----------------------TCEEEEECCTTSSHHHHHHH
T ss_pred EEEEeceE----EEecce-E--------EEecccccCC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 45555565 678763 2 3489999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEe-ccccCCCCccccccCCce
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHF-AQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~-~~~~~~~~~~~~~~~~~~ 232 (388)
|+ |++ ++.+|++.+ ...++|++|++...+..++.++...+ ...+. .. ..+. ..
T Consensus 402 l~----Gl~-~p~~G~I~~----------------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~--~~--~~~~-~~ 455 (607)
T 3bk7_A 402 LA----GVE-EPTEGKVEW----------------DLTVAYKPQYIKAEYEGTVYELLSKIDSSKLN--SN--FYKT-EL 455 (607)
T ss_dssp HH----TSS-CCSBSCCCC----------------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHH--CH--HHHH-HT
T ss_pred Hh----cCC-CCCceEEEE----------------eeEEEEEecCccCCCCCcHHHHHHhhhccCCC--HH--HHHH-HH
Confidence 99 998 777999653 13589999987665555554322111 00000 00 0000 11
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVE 307 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vt 307 (388)
+...++....++++..|||||+||+.||++|+. +|++|||||||++| ..+...++++.++...+++++|
T Consensus 456 l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~------~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vs 529 (607)
T 3bk7_A 456 LKPLGIIDLYDRNVEDLSGGELQRVAIAATLLR------DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 529 (607)
T ss_dssp HHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTS------CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHcCCchHhcCChhhCCHHHHHHHHHHHHHHh------CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 111122234567899999999999999999999 99999999999999 7778888887654333599999
Q ss_pred HhHHHHHHHHHHHHHH
Q psy14062 308 TDLKALEPELRKAVNF 323 (388)
Q Consensus 308 H~l~~l~~~~d~~~~y 323 (388)
||++.+..++|++.-+
T Consensus 530 Hd~~~~~~~adrv~vl 545 (607)
T 3bk7_A 530 HDVLMIDYVSDRLIVF 545 (607)
T ss_dssp SCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHhCCEEEEE
Confidence 9999999999876433
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.89 E-value=5e-27 Score=224.70 Aligned_cols=162 Identities=17% Similarity=0.255 Sum_probs=108.5
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|++|||+|++ |++++|+|||||||||||++|+ |++ ++.+|++.+.|
T Consensus 54 l~~isl~i~~----------------------Ge~~~i~G~NGsGKSTLlk~l~----Gl~-~p~~G~I~~~g------- 99 (290)
T 2bbs_A 54 LKDINFKIER----------------------GQLLAVAGSTGAGKTSLLMMIM----GEL-EPSEGKIKHSG------- 99 (290)
T ss_dssp EEEEEEEECT----------------------TCEEEEEESTTSSHHHHHHHHT----TSS-CEEEEEEECCS-------
T ss_pred EEeeEEEEcC----------------------CCEEEEECCCCCcHHHHHHHHh----cCC-CCCCcEEEECC-------
Confidence 4499999999 9999999999999999999999 998 77799976643
Q ss_pred ccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccc-ccCCceE-E-EEEEe----eeCCCCeeeeCCccc
Q psy14062 182 YRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYE-IIPGTDL-E-IARTA----FYDNSSYYTLNGKKV 254 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~-~~~~~~l-~-~~r~~----~~~~~~~~~LSgGq~ 254 (388)
.++|++|++..++. ++.++...+ . ....... ......+ . +.+.. ...+..+..|||||+
T Consensus 100 ---------~i~~v~Q~~~l~~~-tv~enl~~~-~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~ 165 (290)
T 2bbs_A 100 ---------RISFCSQNSWIMPG-TIKENIIGV-S---YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQR 165 (290)
T ss_dssp ---------CEEEECSSCCCCSS-BHHHHHHTT-C---CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHH
T ss_pred ---------EEEEEeCCCccCcc-cHHHHhhCc-c---cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHH
Confidence 38999999877654 544432210 0 0000000 0000000 0 00000 011234578999999
Q ss_pred cHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhh-hHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 255 HFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGK-YDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 255 qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~-l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
||+.||++|+. +|+++||||||++| ..+... +.++. .+. +++++||+++.+. .||++
T Consensus 166 QRv~lAraL~~------~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~-tviivtHd~~~~~-~~d~i 228 (290)
T 2bbs_A 166 ARISLARAVYK------DADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANK-TRILVTSKMEHLK-KADKI 228 (290)
T ss_dssp HHHHHHHHHHS------CCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTS-EEEEECCCHHHHH-HSSEE
T ss_pred HHHHHHHHHHC------CCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCC-EEEEEecCHHHHH-cCCEE
Confidence 99999999999 99999999999999 444443 22332 244 5999999998875 47764
No 47
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.88 E-value=2e-25 Score=230.70 Aligned_cols=187 Identities=17% Similarity=0.153 Sum_probs=123.4
Q ss_pred EEecCce-eecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcC
Q psy14062 86 KSYAGYV-TLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGP 164 (388)
Q Consensus 86 ksy~~~~-~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGp 164 (388)
++|++.. ++ .+|| +|.+ |++++|+||||||||||+++|+ |++ +
T Consensus 29 ~~yg~~~~~l--------~~vs-~i~~----------------------Ge~~~LvG~NGaGKSTLlk~l~----Gl~-~ 72 (538)
T 1yqt_A 29 HRYGVNAFVL--------YRLP-VVKE----------------------GMVVGIVGPNGTGKSTAVKILA----GQL-I 72 (538)
T ss_dssp EECSTTCCEE--------ECCC-CCCT----------------------TSEEEEECCTTSSHHHHHHHHH----TSS-C
T ss_pred EEECCccccc--------cCcC-cCCC----------------------CCEEEEECCCCCCHHHHHHHHh----CCC-C
Confidence 7898753 44 4999 9999 9999999999999999999999 988 7
Q ss_pred CCCCcceee-hhh-hhhcCccchh----h--hhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEE
Q psy14062 165 NGSGKSNVI-DSM-LFVFGYRASK----I--RANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIA 236 (388)
Q Consensus 165 ngSGKs~i~-da~-i~vlg~~~~~----l--r~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (388)
+.+|++... +.. ..+.|..... . ....+++++|.....+......+.-.+.. .... ..+. ..+...
T Consensus 73 p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~-~~~~----~~~~-~~l~~l 146 (538)
T 1yqt_A 73 PNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK-ADET----GKLE-EVVKAL 146 (538)
T ss_dssp CCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHH-HCSS----SCHH-HHHHHT
T ss_pred CCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhh-hhHH----HHHH-HHHHHc
Confidence 778984100 000 0223332211 1 12346777776443322110000000000 0000 0000 011111
Q ss_pred EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHH
Q psy14062 237 RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLK 311 (388)
Q Consensus 237 r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~ 311 (388)
++....++++..|||||+||+.||++|+. +|++|||||||++| +.+...++++++++. +|+++||+++
T Consensus 147 gl~~~~~~~~~~LSgGekQRv~iAraL~~------~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~-tvi~vsHd~~ 219 (538)
T 1yqt_A 147 ELENVLEREIQHLSGGELQRVAIAAALLR------NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGK-SVLVVEHDLA 219 (538)
T ss_dssp TCTTTTTSBGGGCCHHHHHHHHHHHHHHS------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC-EEEEECSCHH
T ss_pred CCChhhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCC-EEEEEeCCHH
Confidence 22233567889999999999999999999 99999999999999 667888888877655 5999999999
Q ss_pred HHHHHHHHHH
Q psy14062 312 ALEPELRKAV 321 (388)
Q Consensus 312 ~l~~~~d~~~ 321 (388)
.+...||++.
T Consensus 220 ~~~~~~dri~ 229 (538)
T 1yqt_A 220 VLDYLSDIIH 229 (538)
T ss_dssp HHHHHCSEEE
T ss_pred HHHHhCCEEE
Confidence 9999988764
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.87 E-value=2.8e-25 Score=232.38 Aligned_cols=184 Identities=14% Similarity=0.108 Sum_probs=122.0
Q ss_pred EEecCce-eecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcC
Q psy14062 86 KSYAGYV-TLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGP 164 (388)
Q Consensus 86 ksy~~~~-~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGp 164 (388)
++|++.. + |.+|| +|.+ |++++|+|||||||||||++|+ |++ +
T Consensus 99 ~~yg~~~~~--------l~~vs-~i~~----------------------Ge~~~LiG~NGsGKSTLlkiL~----Gll-~ 142 (607)
T 3bk7_A 99 HRYGVNAFV--------LYRLP-IVKD----------------------GMVVGIVGPNGTGKTTAVKILA----GQL-I 142 (607)
T ss_dssp EECSTTCCE--------EECCC-CCCT----------------------TSEEEEECCTTSSHHHHHHHHT----TSS-C
T ss_pred EEECCCCee--------eCCCC-CCCC----------------------CCEEEEECCCCChHHHHHHHHh----CCC-C
Confidence 6787653 4 44999 9999 9999999999999999999999 998 6
Q ss_pred CCCCcceeeh-hh-hhhcCccchh----h--hhccceeEecccCCCCCc---ceEEEEEEeccccCCCCccccccCCceE
Q psy14062 165 NGSGKSNVID-SM-LFVFGYRASK----I--RANKLSVLMHKSDQVGGV---SRCSVAIHFAQIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 165 ngSGKs~i~d-a~-i~vlg~~~~~----l--r~~~i~~l~q~~~~~~~~---~~~eV~~~~~~~~~~~~~~~~~~~~~~l 233 (388)
+.+|++...- .. ..+.|..... . ....+++++|.....+.. ++.++ +. . ..... .+. ..+
T Consensus 143 p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~---l~-~-~~~~~---~~~-~~L 213 (607)
T 3bk7_A 143 PNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVREL---LK-K-VDEVG---KFE-EVV 213 (607)
T ss_dssp CCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHH---HH-H-TCCSS---CHH-HHH
T ss_pred CCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHH---hh-h-hHHHH---HHH-HHH
Confidence 6789841100 00 0223332211 1 123467777764332211 11110 00 0 00000 000 011
Q ss_pred EEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 234 ~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH 308 (388)
...++....++++..|||||+||+.||++|+. +|++|||||||++| +.+...++++++++. +++++||
T Consensus 214 ~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~------~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~-tvIivsH 286 (607)
T 3bk7_A 214 KELELENVLDRELHQLSGGELQRVAIAAALLR------KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK-AVLVVEH 286 (607)
T ss_dssp HHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHS------CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTC-EEEEECS
T ss_pred HHcCCCchhCCChhhCCHHHHHHHHHHHHHhc------CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCC-EEEEEec
Confidence 11122234467889999999999999999999 99999999999999 667888888876655 5999999
Q ss_pred hHHHHHHHHHHHH
Q psy14062 309 DLKALEPELRKAV 321 (388)
Q Consensus 309 ~l~~l~~~~d~~~ 321 (388)
|++.+...+|++.
T Consensus 287 dl~~~~~~adri~ 299 (607)
T 3bk7_A 287 DLAVLDYLSDVIH 299 (607)
T ss_dssp CHHHHHHHCSEEE
T ss_pred ChHHHHhhCCEEE
Confidence 9999999888753
No 49
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.87 E-value=1.3e-24 Score=230.61 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=62.6
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCCCc--eEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNR--FLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALE 314 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~--~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~ 314 (388)
.++++..|||||+||++||++|+. +|+ +|||||||++| ..+.++++++++++. +|++||||++.+.
T Consensus 196 ~~~~~~~LSGGe~QRv~iArAL~~------~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~-tvi~vtHd~~~~~ 268 (670)
T 3ux8_A 196 LSRSAGTLSGGEAQRIRLATQIGS------RLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGN-TLIVVEHDEDTML 268 (670)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHHHT------CCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTC-EEEEECCCHHHHH
T ss_pred hcCCcccCCHHHHHHHHHHHHHhh------CCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCC-EEEEEeCCHHHHh
Confidence 367889999999999999999999 888 99999999999 788889988877665 5999999999765
Q ss_pred HHHHHHH
Q psy14062 315 PELRKAV 321 (388)
Q Consensus 315 ~~~d~~~ 321 (388)
.||++.
T Consensus 269 -~~d~ii 274 (670)
T 3ux8_A 269 -AADYLI 274 (670)
T ss_dssp -HCSEEE
T ss_pred -hCCEEE
Confidence 477654
No 50
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=7.3e-25 Score=228.97 Aligned_cols=174 Identities=14% Similarity=0.112 Sum_probs=119.7
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
++++||++..| ...-|++++|+||||||||||+++|+ |++ ++.+|+. +
T Consensus 363 l~~vsl~v~~G-----------------~~~~GEiv~iiG~NGsGKSTLlk~l~----Gl~-~p~~G~~------~---- 410 (608)
T 3j16_B 363 QGDFVLNVEEG-----------------EFSDSEILVMMGENGTGKTTLIKLLA----GAL-KPDEGQD------I---- 410 (608)
T ss_dssp CSSCEEEECCE-----------------ECCTTCEEEEESCTTSSHHHHHHHHH----TSS-CCSBCCC------C----
T ss_pred cCceEEEEecC-----------------ccccceEEEEECCCCCcHHHHHHHHh----cCC-CCCCCcC------c----
Confidence 34899999981 01114889999999999999999999 998 7778862 0
Q ss_pred ccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHH
Q psy14062 182 YRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAK 261 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~ 261 (388)
....+++++|+.......++.++. +.......... ... ...+...++....++++..|||||+||+.||+
T Consensus 411 ------~~~~i~~~~q~~~~~~~~tv~e~~--~~~~~~~~~~~-~~~-~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAr 480 (608)
T 3j16_B 411 ------PKLNVSMKPQKIAPKFPGTVRQLF--FKKIRGQFLNP-QFQ-TDVVKPLRIDDIIDQEVQHLSGGELQRVAIVL 480 (608)
T ss_dssp ------CSCCEEEECSSCCCCCCSBHHHHH--HHHCSSTTTSH-HHH-HHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHH
T ss_pred ------cCCcEEEecccccccCCccHHHHH--HHHhhcccccH-HHH-HHHHHHcCChhhhcCChhhCCHHHHHHHHHHH
Confidence 113588999875544333333211 11111110000 000 00111112223457789999999999999999
Q ss_pred HHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 262 VLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 262 aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+|+. +|++|||||||++| .++..+++++..+...+++++|||++.+...+|++.-+
T Consensus 481 aL~~------~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl 541 (608)
T 3j16_B 481 ALGI------PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVF 541 (608)
T ss_dssp HTTS------CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEC
T ss_pred HHHh------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999 99999999999999 67788888876543345999999999999999887544
No 51
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.85 E-value=1.5e-23 Score=236.18 Aligned_cols=196 Identities=15% Similarity=0.160 Sum_probs=131.6
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.+++ ++|++... ..+|+||||+|++ |++++|+||||||||||+++
T Consensus 387 ~i~~~~v~----~~y~~~~~-----~~vL~~isl~i~~----------------------G~~~~ivG~sGsGKSTl~~l 435 (1284)
T 3g5u_A 387 NLEFKNIH----FSYPSRKE-----VQILKGLNLKVKS----------------------GQTVALVGNSGCGKSTTVQL 435 (1284)
T ss_dssp CEEEEEEE----ECCSSTTS-----CCSEEEEEEEECT----------------------TCEEEEECCSSSSHHHHHHH
T ss_pred eEEEEEEE----EEcCCCCC-----CcceecceEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 47777777 77975310 1135599999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCcccc----ccC
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYE----IIP 229 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~----~~~ 229 (388)
|+ |++ ++.+|++.++|.++... +...+| +.+++|+|++.+++. +..++..+... +....... ...
T Consensus 436 l~----g~~-~~~~G~i~i~g~~i~~~--~~~~~r-~~i~~v~Q~~~l~~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~ 504 (1284)
T 3g5u_A 436 MQ----RLY-DPLDGMVSIDGQDIRTI--NVRYLR-EIIGVVSQEPVLFAT-TIAENIRYGRE--DVTMDEIEKAVKEAN 504 (1284)
T ss_dssp TT----TSS-CCSEEEEEETTEEGGGS--CHHHHH-HHEEEECSSCCCCSS-CHHHHHHHHCS--SCCHHHHHHHHHHTT
T ss_pred Hh----CCC-CCCCeEEEECCEEHHhC--CHHHHH-hheEEEcCCCccCCc-cHHHHHhcCCC--CCCHHHHHHHHHHhC
Confidence 99 888 77899999988766533 223344 459999999988765 54443221100 00100000 000
Q ss_pred C-ceEE-E-EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhh
Q psy14062 230 G-TDLE-I-ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLT 301 (388)
Q Consensus 230 ~-~~l~-~-~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~ 301 (388)
. ..+. + .+....-+.....|||||+||++|||+|.. +|++|||||||++| ..+...++.+. ++.
T Consensus 505 ~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~- 576 (1284)
T 3g5u_A 505 AYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR------NPKILLLDEATSALDTESEAVVQAALDKAR-EGR- 576 (1284)
T ss_dssp CHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH------CCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTS-
T ss_pred cHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc------CCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCC-
Confidence 0 0000 0 000111245667899999999999999999 99999999999999 33444454443 344
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q psy14062 302 RVQLVETDLKALEPELRKA 320 (388)
Q Consensus 302 ~ii~vtH~l~~l~~~~d~~ 320 (388)
++++++|++..+.. ||++
T Consensus 577 t~i~itH~l~~i~~-~d~i 594 (1284)
T 3g5u_A 577 TTIVIAHRLSTVRN-ADVI 594 (1284)
T ss_dssp EEEEECSCHHHHTT-CSEE
T ss_pred EEEEEecCHHHHHc-CCEE
Confidence 59999999998865 6643
No 52
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.84 E-value=2.9e-23 Score=233.71 Aligned_cols=198 Identities=15% Similarity=0.140 Sum_probs=130.9
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+.+++ ++|++... ..+|+||||+|++ |+++||+||||||||||+++
T Consensus 1030 ~i~~~~v~----~~y~~~~~-----~~~l~~vsl~i~~----------------------Ge~v~ivG~sGsGKSTl~~~ 1078 (1284)
T 3g5u_A 1030 NVQFSGVV----FNYPTRPS-----IPVLQGLSLEVKK----------------------GQTLALVGSSGCGKSTVVQL 1078 (1284)
T ss_dssp CEEEEEEE----BCCSCGGG-----CCSBSSCCEEECS----------------------SSEEEEECSSSTTHHHHHHH
T ss_pred cEEEEEEE----EECCCCCC-----CeeecceeEEEcC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 46777777 67875421 1135699999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-c---ccC
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-E---IIP 229 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~---~~~ 229 (388)
|+ |+. ++.+|++.++|.++.-. ....+| +++++|+|++..+.. +..++............... . ...
T Consensus 1079 l~----g~~-~p~~G~I~i~g~~i~~~--~~~~~r-~~i~~v~Q~~~l~~~-ti~eNi~~~~~~~~~~~~~i~~~~~~~~ 1149 (1284)
T 3g5u_A 1079 LE----RFY-DPMAGSVFLDGKEIKQL--NVQWLR-AQLGIVSQEPILFDC-SIAENIAYGDNSRVVSYEEIVRAAKEAN 1149 (1284)
T ss_dssp HT----TSS-CCSEEEEESSSSCTTSS--CHHHHT-TSCEEEESSCCCCSS-BHHHHHTCCCSSCCCCHHHHHHHHHHHT
T ss_pred Hh----cCc-CCCCCEEEECCEEcccC--CHHHHH-hceEEECCCCccccc-cHHHHHhccCCCCCCCHHHHHHHHHHhC
Confidence 99 888 77899998888766422 223344 569999999877643 43332211100000000000 0 000
Q ss_pred C-ceEE-E-EEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhh
Q psy14062 230 G-TDLE-I-ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLT 301 (388)
Q Consensus 230 ~-~~l~-~-~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~ 301 (388)
- ..+. + .+....-+.....|||||+||++|||+|.. +|++|||||||++| +.+.+.+++.. .+.
T Consensus 1150 ~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~------~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~- 1221 (1284)
T 3g5u_A 1150 IHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVR------QPHILLLDEATSALDTESEKVVQEALDKAR-EGR- 1221 (1284)
T ss_dssp CHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHH------CCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSS-
T ss_pred cHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHc------CCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCC-
Confidence 0 0000 0 000011234567899999999999999999 99999999999999 45555665533 344
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q psy14062 302 RVQLVETDLKALEPELRKA 320 (388)
Q Consensus 302 ~ii~vtH~l~~l~~~~d~~ 320 (388)
++++++|+++.+.. ||++
T Consensus 1222 tvi~isH~l~~i~~-~dri 1239 (1284)
T 3g5u_A 1222 TCIVIAHRLSTIQN-ADLI 1239 (1284)
T ss_dssp CEEEECSCTTGGGS-CSEE
T ss_pred EEEEEecCHHHHHc-CCEE
Confidence 59999999998854 7764
No 53
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.83 E-value=1.4e-22 Score=228.63 Aligned_cols=193 Identities=15% Similarity=0.198 Sum_probs=123.9
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+++++ .+|.++.- ..+|+||||+|++ |+.+|||||||||||||+++
T Consensus 1076 ~I~f~nVs----f~Y~~~~~-----~~VL~~isl~I~~----------------------Ge~vaIVG~SGsGKSTL~~l 1124 (1321)
T 4f4c_A 1076 KVIFKNVR----FAYPERPE-----IEILKGLSFSVEP----------------------GQTLALVGPSGCGKSTVVAL 1124 (1321)
T ss_dssp CEEEEEEE----ECCTTSCS-----SCSEEEEEEEECT----------------------TCEEEEECSTTSSTTSHHHH
T ss_pred eEEEEEEE----EeCCCCCC-----CccccceeEEECC----------------------CCEEEEECCCCChHHHHHHH
Confidence 46666666 56864321 1135699999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccc-cccCCce
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY-EIIPGTD 232 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~-~~~~~~~ 232 (388)
|. +++ ++.+|++.|+|.++.-. +...+| +++++|+|+|.+|.+.-..++.+.... .+..+++. +......
T Consensus 1125 L~----rl~-~p~~G~I~iDG~di~~i--~~~~lR-~~i~~V~Qdp~LF~gTIreNI~~gld~-~~~sd~ei~~Al~~a~ 1195 (1321)
T 4f4c_A 1125 LE----RFY-DTLGGEIFIDGSEIKTL--NPEHTR-SQIAIVSQEPTLFDCSIAENIIYGLDP-SSVTMAQVEEAARLAN 1195 (1321)
T ss_dssp HT----TSS-CCSSSEEEETTEETTTB--CHHHHH-TTEEEECSSCCCCSEEHHHHHSSSSCT-TTSCHHHHHHHHHHTT
T ss_pred Hh----cCc-cCCCCEEEECCEEhhhC--CHHHHH-hheEEECCCCEeeCccHHHHHhccCCC-CCCCHHHHHHHHHHhC
Confidence 99 887 77799999988776533 334466 459999999998865322222111100 00000000 0000000
Q ss_pred E-E-EE----EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhh
Q psy14062 233 L-E-IA----RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLT 301 (388)
Q Consensus 233 l-~-~~----r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~ 301 (388)
+ . +. +....-+.....|||||+||++|||||.. +|++||||||||+| ..|.+.+++..+ +.
T Consensus 1196 l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr------~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~-~~- 1267 (1321)
T 4f4c_A 1196 IHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVR------NPKILLLDEATSALDTESEKVVQEALDRARE-GR- 1267 (1321)
T ss_dssp CHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHS------CCSEEEEESCCCSTTSHHHHHHHHHHTTTSS-SS-
T ss_pred ChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHh------CCCEEEEeCccccCCHHHHHHHHHHHHHHcC-CC-
Confidence 0 0 00 00011134557899999999999999999 99999999999999 233334433322 23
Q ss_pred HHHHHHHhHHHHH
Q psy14062 302 RVQLVETDLKALE 314 (388)
Q Consensus 302 ~ii~vtH~l~~l~ 314 (388)
|+++|+|.+..+.
T Consensus 1268 TvI~IAHRLsTi~ 1280 (1321)
T 4f4c_A 1268 TCIVIAHRLNTVM 1280 (1321)
T ss_dssp EEEEECSSSSTTT
T ss_pred EEEEeccCHHHHH
Confidence 5888999876654
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.81 E-value=6.1e-23 Score=222.58 Aligned_cols=71 Identities=13% Similarity=0.073 Sum_probs=55.9
Q ss_pred CCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH--HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 243 NSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM--EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 243 ~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L--e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
++++..|||||+||+.||++|.. +|++|||||||++| .....++..+++.+. +|+++|||++.+...||++
T Consensus 896 ~~~~~~LSGGQkQRVaLArAL~~------~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~-tVIiISHD~e~v~~l~DrV 968 (986)
T 2iw3_A 896 HSRIRGLSGGQKVKLVLAAGTWQ------RPHLIVLDEPTNYLDRDSLGALSKALKEFEG-GVIIITHSAEFTKNLTEEV 968 (986)
T ss_dssp HSCGGGCCHHHHHHHHHHHHHTT------CCSEEEEECGGGTCCHHHHHHHHHHHHSCSS-EEEEECSCHHHHTTTCCEE
T ss_pred CCCccccCHHHHHHHHHHHHHHh------CCCEEEEECCccCCCHHHHHHHHHHHHHhCC-EEEEEECCHHHHHHhCCEE
Confidence 45678999999999999999999 99999999999999 222223333333233 5999999999998887764
No 55
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.81 E-value=9e-22 Score=222.16 Aligned_cols=188 Identities=13% Similarity=0.152 Sum_probs=124.3
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.+.+++++ .+|.+..- ..+|+||||+|++ |+.+|||||||||||||+++
T Consensus 415 ~I~~~nvs----F~Y~~~~~-----~~vL~~isl~i~~----------------------G~~vaivG~sGsGKSTll~l 463 (1321)
T 4f4c_A 415 DITVENVH----FTYPSRPD-----VPILRGMNLRVNA----------------------GQTVALVGSSGCGKSTIISL 463 (1321)
T ss_dssp CEEEEEEE----ECCSSSTT-----SCSEEEEEEEECT----------------------TCEEEEEECSSSCHHHHHHH
T ss_pred cEEEEEee----eeCCCCCC-----CceeeceEEeecC----------------------CcEEEEEecCCCcHHHHHHH
Confidence 45555555 46854210 1235599999999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccC----
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIP---- 229 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~---- 229 (388)
|. |++ ++.+|++.++|.++.-. +...+| +.+++|+|++.+|.. +..++..+ +..+..++.+.
T Consensus 464 l~----~~~-~~~~G~I~idG~~i~~~--~~~~lr-~~i~~v~Q~~~Lf~~-TI~eNI~~-----g~~~~~~~~v~~a~~ 529 (1321)
T 4f4c_A 464 LL----RYY-DVLKGKITIDGVDVRDI--NLEFLR-KNVAVVSQEPALFNC-TIEENISL-----GKEGITREEMVAACK 529 (1321)
T ss_dssp HT----TSS-CCSEEEEEETTEETTTS--CHHHHH-HHEEEECSSCCCCSE-EHHHHHHT-----TCTTCCHHHHHHHHH
T ss_pred hc----ccc-ccccCcccCCCccchhc--cHHHHh-hcccccCCcceeeCC-chhHHHhh-----hcccchHHHHHHHHH
Confidence 99 888 77799999888766422 233455 459999999988754 33222211 11110000000
Q ss_pred --C--ceEEEE--EEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 230 --G--TDLEIA--RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 230 --~--~~l~~~--r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
. ..+... +....-+.....|||||+||++|||||.. +|+++|||||||+| ..+...+.++.+
T Consensus 530 ~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~------~~~IliLDE~tSaLD~~te~~i~~~l~~~~~- 602 (1321)
T 4f4c_A 530 MANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR------NPKILLLDEATSALDAESEGIVQQALDKAAK- 602 (1321)
T ss_dssp HTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT------CCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-
T ss_pred HccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc------CCCEEEEecccccCCHHHHHHHHHHHHHHhC-
Confidence 0 000000 00001145567899999999999999999 99999999999999 344455655543
Q ss_pred hhhHHHHHHHhHHHHH
Q psy14062 299 KLTRVQLVETDLKALE 314 (388)
Q Consensus 299 ~~~~ii~vtH~l~~l~ 314 (388)
+. |+++|+|++..+.
T Consensus 603 ~~-T~iiiaHrls~i~ 617 (1321)
T 4f4c_A 603 GR-TTIIIAHRLSTIR 617 (1321)
T ss_dssp TS-EEEEECSCTTTTT
T ss_pred CC-EEEEEcccHHHHH
Confidence 33 5888999876543
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.80 E-value=2.3e-22 Score=218.01 Aligned_cols=178 Identities=18% Similarity=0.203 Sum_probs=117.8
Q ss_pred CCcEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 72 GPRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 72 ~~~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
+..+...+++ ++|+++.+|+ ||||+|.+ |++++|+||||||||||+
T Consensus 433 ~~~L~~~~ls----~~yg~~~iL~--------~vsl~I~~----------------------Ge~v~LiGpNGsGKSTLL 478 (986)
T 2iw3_A 433 GEDLCNCEFS----LAYGAKILLN--------KTQLRLKR----------------------ARRYGICGPNGCGKSTLM 478 (986)
T ss_dssp SCEEEEEEEE----EEETTEEEEE--------EEEEEEET----------------------TCEEEEECSTTSSHHHHH
T ss_pred cceeEEeeEE----EEECCEEeEe--------cceEEEcC----------------------CCEEEEECCCCCCHHHHH
Confidence 3345555666 7899887765 99999999 999999999999999999
Q ss_pred hhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEeccc-CCCCCcceEEEEEEeccccCCCCccccccCC
Q psy14062 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKS-DQVGGVSRCSVAIHFAQIIDKPNEEYEIIPG 230 (388)
Q Consensus 152 ~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~-~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~ 230 (388)
++|+ | |++ . |..... ..++++++|+. ..++..++.++... ...+. ...+.
T Consensus 479 k~La----g-------G~i--~-------g~~~~~--~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~~~----~~~v~- 529 (986)
T 2iw3_A 479 RAIA----N-------GQV--D-------GFPTQE--ECRTVYVEHDIDGTHSDTSVLDFVFE--SGVGT----KEAIK- 529 (986)
T ss_dssp HHHH----H-------TCS--T-------TCCCTT--TSCEEETTCCCCCCCTTSBHHHHHHT--TCSSC----HHHHH-
T ss_pred HHHh----C-------CCc--C-------CCcccc--ceeEEEEcccccccccCCcHHHHHHH--hhcCH----HHHHH-
Confidence 9999 4 321 1 111100 01256777653 33444444332110 00010 00000
Q ss_pred ceEEEEEE-eeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHH
Q psy14062 231 TDLEIART-AFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQ 304 (388)
Q Consensus 231 ~~l~~~r~-~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii 304 (388)
..+...++ ....++++..|||||+||+.||++|+. +|++|||||||++| +.+.+.+.+ .+. +++
T Consensus 530 ~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~------~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~-tvI 599 (986)
T 2iw3_A 530 DKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLR------NADILLLDEPTNHLDTVNVAWLVNYLNT---CGI-TSI 599 (986)
T ss_dssp HHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHT------TCSEEEEESTTTTCCHHHHHHHHHHHHH---SCS-EEE
T ss_pred HHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhc------CCCEEEEECCccCCCHHHHHHHHHHHHh---CCC-EEE
Confidence 01111122 122356788999999999999999999 99999999999999 555555554 344 599
Q ss_pred HHHHhHHHHHHHHHHHHH
Q psy14062 305 LVETDLKALEPELRKAVN 322 (388)
Q Consensus 305 ~vtH~l~~l~~~~d~~~~ 322 (388)
++||+++.+...||++..
T Consensus 600 ivSHdl~~l~~~adrii~ 617 (986)
T 2iw3_A 600 TISHDSVFLDNVCEYIIN 617 (986)
T ss_dssp EECSCHHHHHHHCSEEEE
T ss_pred EEECCHHHHHHhCCEEEE
Confidence 999999999999887643
No 57
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.80 E-value=2.5e-22 Score=207.33 Aligned_cols=169 Identities=17% Similarity=0.153 Sum_probs=103.7
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceee----hhhhhhcCccchhh----hhcc--ceeEecccCCCC
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVI----DSMLFVFGYRASKI----RANK--LSVLMHKSDQVG 203 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~----da~i~vlg~~~~~l----r~~~--i~~l~q~~~~~~ 203 (388)
|+++|||||||||||||+++|+ |++ ++.+|++... +....+.|...... .... +...++.....+
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~----Gl~-~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILA----GEI-IPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHT----TSS-CCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCEEEEECCCCCcHHHHHHHHh----cCC-CCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 9999999999999999999999 998 6678986311 11112233322111 1111 122222211111
Q ss_pred CcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchh
Q psy14062 204 GVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIA 283 (388)
Q Consensus 204 ~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s 283 (388)
......+.-.+.. ... ..... ..+...++....++++..|||||+||++||++|+. +|++|||||||+
T Consensus 100 ~~~~~~v~~~l~~-~~~-~~~~~----~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~------~p~illlDEPts 167 (538)
T 3ozx_A 100 KFLKGTVNEILTK-IDE-RGKKD----EVKELLNMTNLWNKDANILSGGGLQRLLVAASLLR------EADVYIFDQPSS 167 (538)
T ss_dssp TTCCSBHHHHHHH-HCC-SSCHH----HHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHS------CCSEEEEESTTT
T ss_pred hhccCcHHHHhhc-chh-HHHHH----HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc------CCCEEEEECCcc
Confidence 1000000000000 000 00000 01111122334577899999999999999999999 999999999999
Q ss_pred hH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHH
Q psy14062 284 KM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 284 ~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
+| ..+...++++++ +. +|++|||+++.+...||++.
T Consensus 168 ~LD~~~~~~l~~~l~~l~~-g~-tii~vsHdl~~~~~~~d~i~ 208 (538)
T 3ozx_A 168 YLDVRERMNMAKAIRELLK-NK-YVIVVDHDLIVLDYLTDLIH 208 (538)
T ss_dssp TCCHHHHHHHHHHHHHHCT-TS-EEEEECSCHHHHHHHCSEEE
T ss_pred cCCHHHHHHHHHHHHHHhC-CC-EEEEEEeChHHHHhhCCEEE
Confidence 99 567778877765 54 59999999999999988653
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.80 E-value=4.6e-23 Score=215.40 Aligned_cols=172 Identities=13% Similarity=0.120 Sum_probs=104.0
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehh----hhhhcCccchh----hhhccceeEe--cccCCCC
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDS----MLFVFGYRASK----IRANKLSVLM--HKSDQVG 203 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da----~i~vlg~~~~~----lr~~~i~~l~--q~~~~~~ 203 (388)
|++++|+|||||||||||++|+ |++ ++.+|++..... ..++.|..... .....+..++ +.....+
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~----Gll-~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILA----GKQ-KPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIP 177 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHH----TSS-CCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHH
T ss_pred CCEEEEECCCCChHHHHHHHHh----cCC-CCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhh
Confidence 9999999999999999999999 998 667998631111 11222222111 1112222221 1100000
Q ss_pred CcceE---EEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEecc
Q psy14062 204 GVSRC---SVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQE 280 (388)
Q Consensus 204 ~~~~~---eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDE 280 (388)
..... .+...+ ....... ...+. ..+...++....++.+..|||||+||++||++|+. +|++|||||
T Consensus 178 ~~~~~~~~~v~~~l-~~~~~~~--~~~~~-~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~------~p~llllDE 247 (608)
T 3j16_B 178 RAIKGPVQKVGELL-KLRMEKS--PEDVK-RYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQ------EADVYMFDE 247 (608)
T ss_dssp HHCSSSSSHHHHHH-HHHCCSC--HHHHH-HHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHS------CCSEEEEEC
T ss_pred hhhcchhhHHHHHH-hhhhhhH--HHHHH-HHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHh------CCCEEEEEC
Confidence 00000 000000 0000000 00000 11111222334567889999999999999999999 999999999
Q ss_pred chhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHH
Q psy14062 281 PIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 281 P~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
||++| ..+...++++++++. +++++||+++.+...+|++.
T Consensus 248 Pts~LD~~~~~~l~~~l~~l~~~g~-tvi~vtHdl~~~~~~~drv~ 292 (608)
T 3j16_B 248 PSSYLDVKQRLNAAQIIRSLLAPTK-YVICVEHDLSVLDYLSDFVC 292 (608)
T ss_dssp TTTTCCHHHHHHHHHHHHGGGTTTC-EEEEECSCHHHHHHHCSEEE
T ss_pred cccCCCHHHHHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHhCCEEE
Confidence 99999 567777877776665 49999999999999988763
No 59
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.77 E-value=1.2e-20 Score=188.48 Aligned_cols=66 Identities=9% Similarity=-0.001 Sum_probs=54.0
Q ss_pred eCCccccHHHHHHHHHHcCCCCCCC--ceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHH
Q psy14062 249 LNGKKVHFKEVAKVLRDHGVDLLNN--RFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAV 321 (388)
Q Consensus 249 LSgGq~qr~~Ia~aL~~~Gi~~~~p--~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~ 321 (388)
|||||+||+.||++|.. +| ++||||||+++| +.+...|+++. ++. +|++|||+++.+ ..||++.
T Consensus 296 lSgGe~qrl~lA~~l~~------~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~-~vi~itH~~~~~-~~~d~i~ 366 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVL------GADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTR-QVLVVTHLAQIA-ARAHHHY 366 (415)
T ss_dssp SCHHHHHHHHHHHHHHH------CCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTS-EEEEECSCHHHH-TTCSEEE
T ss_pred cCHhHHHHHHHHHHHHh------CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCC-EEEEEeCcHHHH-hhcCeEE
Confidence 59999999999999999 88 999999999999 66777777766 344 599999999765 4577654
Q ss_pred HH
Q psy14062 322 NF 323 (388)
Q Consensus 322 ~y 323 (388)
..
T Consensus 367 ~l 368 (415)
T 4aby_A 367 KV 368 (415)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.75 E-value=1.8e-21 Score=206.44 Aligned_cols=74 Identities=18% Similarity=0.232 Sum_probs=62.7
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCCC---ceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNN---RFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKAL 313 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p---~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l 313 (388)
.++++..|||||+||++||++|+. +| ++|||||||++| ..+..+++++++++. +|++||||++.+
T Consensus 537 ~~~~~~~LSgG~~qrv~iAraL~~------~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~-tvi~vtHd~~~~ 609 (670)
T 3ux8_A 537 LGQPATTLSGGEAQRVKLAAELHR------RSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD-TVLVIEHNLDVI 609 (670)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHHS------CCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC-EEEEECCCHHHH
T ss_pred ccCCchhCCHHHHHHHHHHHHHhh------CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence 357789999999999999999998 65 699999999999 778888888887665 599999999987
Q ss_pred HHHHHHHHHH
Q psy14062 314 EPELRKAVNF 323 (388)
Q Consensus 314 ~~~~d~~~~y 323 (388)
. .||++...
T Consensus 610 ~-~~d~i~~l 618 (670)
T 3ux8_A 610 K-TADYIIDL 618 (670)
T ss_dssp T-TCSEEEEE
T ss_pred H-hCCEEEEe
Confidence 4 58876543
No 61
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1e-20 Score=191.74 Aligned_cols=165 Identities=7% Similarity=-0.088 Sum_probs=103.9
Q ss_pred HhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCC-c-ceeehhhhhhcCccchhhhhccceeEecccCCCC-
Q psy14062 127 IIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSG-K-SNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVG- 203 (388)
Q Consensus 127 ~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSG-K-s~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~- 203 (388)
+++...-|++++|+||||||||||+|+|+ |+. ++.+| + +.+++. . ++.++++||....++
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~----Gl~-~p~~G~~pI~vdg~-----------~-~~~i~~vpq~~~l~~~ 193 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLC----SYA-LKFNAYQPLYINLD-----------P-QQPIFTVPGCISATPI 193 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHH----HTT-HHHHCCCCEEEECC-----------T-TSCSSSCSSCCEEEEC
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHh----Ccc-cccCCceeEEEcCC-----------c-cCCeeeeccchhhccc
Confidence 33444449999999999999999999999 888 66689 8 766641 1 246889998764322
Q ss_pred --CcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHH--HHHcCCCCCCCce----
Q psy14062 204 --GVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKV--LRDHGVDLLNNRF---- 275 (388)
Q Consensus 204 --~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~a--L~~~Gi~~~~p~~---- 275 (388)
..+..++.+ ....... ....... ...+...++.... ....|||||+||+.+|++ |+. +|++
T Consensus 194 ~~~~tv~eni~-~~~~~~~-~~~~~~~-~~ll~~~gl~~~~--~~~~LSgGq~qrlalAra~rL~~------~p~i~~sG 262 (460)
T 2npi_A 194 SDILDAQLPTW-GQSLTSG-ATLLHNK-QPMVKNFGLERIN--ENKDLYLECISQLGQVVGQRLHL------DPQVRRSG 262 (460)
T ss_dssp CSCCCTTCTTC-SCBCBSS-CCSSCCB-CCEECCCCSSSGG--GCHHHHHHHHHHHHHHHHHHHHH------CHHHHHSC
T ss_pred ccccchhhhhc-ccccccC-cchHHHH-HHHHHHhCCCccc--chhhhhHHHHHHHHHHHHHHhcc------CcccCcce
Confidence 222222111 1110000 0000111 1122222222111 267899999999999999 999 9999
Q ss_pred EEecc-chhhHHHHHhhhHHHHHHhhhHHHHHHHhHH------HHHHHHHH
Q psy14062 276 LILQE-PIAKMEVLYGKYDEERTEKLTRVQLVETDLK------ALEPELRK 319 (388)
Q Consensus 276 LLlDE-P~s~Le~i~~~l~el~~e~~~~ii~vtH~l~------~l~~~~d~ 319 (388)
||+|| |+++|......+.++.++...++++|+|+.+ .+..++|+
T Consensus 263 LlLDEpPts~LD~~~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr 313 (460)
T 2npi_A 263 CIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPE 313 (460)
T ss_dssp EEEECCCGGGSCSSCHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHH
T ss_pred EEEeCCcccccChhHHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhccc
Confidence 99999 9999811134444443332335889999876 77788887
No 62
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.73 E-value=1.1e-19 Score=160.26 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=49.5
Q ss_pred eeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhHHH---------------------HHhhhHHHHHHhhhHHHH
Q psy14062 247 YTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKMEV---------------------LYGKYDEERTEKLTRVQL 305 (388)
Q Consensus 247 ~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~Le~---------------------i~~~l~el~~e~~~~ii~ 305 (388)
+..|+|++||++||+++.. +|++++||||+++|.. +...+.++++++. ++++
T Consensus 82 ~~~s~g~~qrv~iAral~~------~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~-tvi~ 154 (171)
T 4gp7_A 82 NVQESARKPLIEMAKDYHC------FPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGF-RYVY 154 (171)
T ss_dssp CCSHHHHHHHHHHHHHTTC------EEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTC-SEEE
T ss_pred CCCHHHHHHHHHHHHHcCC------cEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCC-cEEE
Confidence 3448999999999999999 9999999999999921 2334555666655 4999
Q ss_pred HHHhHHHHHH
Q psy14062 306 VETDLKALEP 315 (388)
Q Consensus 306 vtH~l~~l~~ 315 (388)
+||+++++..
T Consensus 155 vtH~~~~~~~ 164 (171)
T 4gp7_A 155 ILNSPEEVEE 164 (171)
T ss_dssp EECSHHHHHH
T ss_pred EeCCHHHhhh
Confidence 9999998864
No 63
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.70 E-value=7.9e-20 Score=180.33 Aligned_cols=75 Identities=9% Similarity=0.080 Sum_probs=57.1
Q ss_pred CCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHH
Q psy14062 243 NSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPEL 317 (388)
Q Consensus 243 ~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~ 317 (388)
++++..|||||+||+.||++|+.......+|++|||||||++| +.+.+.+.++++.+. +|+++||+++. ...+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~-tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNK-VIVFITHDREF-SEAF 351 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSS-EEEEEESCHHH-HTTC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCC-EEEEEecchHH-HHhC
Confidence 3577889999999999999998211111289999999999999 666777777765555 59999999987 4445
Q ss_pred HH
Q psy14062 318 RK 319 (388)
Q Consensus 318 d~ 319 (388)
|+
T Consensus 352 d~ 353 (365)
T 3qf7_A 352 DR 353 (365)
T ss_dssp SC
T ss_pred CE
Confidence 43
No 64
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.67 E-value=2e-18 Score=167.33 Aligned_cols=72 Identities=11% Similarity=0.118 Sum_probs=53.1
Q ss_pred CCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHH
Q psy14062 243 NSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPEL 317 (388)
Q Consensus 243 ~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~ 317 (388)
+..+..||+||+|++.||++|+...+ ..|+++|||||+++| +.+...+.++. ++. +++++||+.+ +...|
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~--~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~-~vi~~tH~~~-~~~~~ 288 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEI--KPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHT-QFIVITHNKI-VMEAA 288 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTT--SCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTS-EEEEECCCTT-GGGGC
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhcc--CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCC-eEEEEECCHH-HHhhC
Confidence 45678999999999999999984211 268999999999999 55666666653 333 5899999954 44445
Q ss_pred HH
Q psy14062 318 RK 319 (388)
Q Consensus 318 d~ 319 (388)
|+
T Consensus 289 d~ 290 (322)
T 1e69_A 289 DL 290 (322)
T ss_dssp SE
T ss_pred ce
Confidence 53
No 65
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.67 E-value=1.1e-19 Score=165.59 Aligned_cols=137 Identities=17% Similarity=0.068 Sum_probs=81.1
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEE-E
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVA-I 212 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~-~ 212 (388)
|++++|+||||||||||+++|+ |+ ++.+|++...+ + ...... +++.++++||++ .++. .
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~----Gl--~p~~G~I~~~~--~---~~~~~~-~~~~ig~v~q~~--------~enl~~ 81 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKA----VQ--ALQSKQVSRII--L---TRPAVE-AGEKLGFLPGTL--------NEKIDP 81 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHH----HH--HHHTTSCSEEE--E---EECSCC-TTCCCCSSCC--------------CT
T ss_pred CCEEEEECCCCCCHHHHHHHHh----cC--CCcCCeeeeEE--e---cCCchh-hhcceEEecCCH--------HHHHHH
Confidence 9999999999999999999999 98 55689974311 1 111111 235699999975 1111 0
Q ss_pred Ee----ccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-HH
Q psy14062 213 HF----AQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-EV 287 (388)
Q Consensus 213 ~~----~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-e~ 287 (388)
++ ..+..... ... ....... +.||+||+.||++|+. +|++|||||||++- ..
T Consensus 82 ~~~~~~~~~~~~~~--~~~----------~~~~l~~-----glGq~qrv~lAraL~~------~p~lllLDEPts~~~~~ 138 (208)
T 3b85_A 82 YLRPLHDALRDMVE--PEV----------IPKLMEA-----GIVEVAPLAYMRGRTL------NDAFVILDEAQNTTPAQ 138 (208)
T ss_dssp TTHHHHHHHTTTSC--TTH----------HHHHHHT-----TSEEEEEGGGGTTCCB------CSEEEEECSGGGCCHHH
T ss_pred HHHHHHHHHHHhcc--HHH----------HHHHHHh-----CCchHHHHHHHHHHhc------CCCEEEEeCCccccHHH
Confidence 00 00000000 000 0000001 2299999999999999 99999999999985 55
Q ss_pred HHhhhHHHHHHhhhHHHHHHHhHHHHHHH
Q psy14062 288 LYGKYDEERTEKLTRVQLVETDLKALEPE 316 (388)
Q Consensus 288 i~~~l~el~~e~~~~ii~vtH~l~~l~~~ 316 (388)
+...+.++ .++. +++ +||+++.++..
T Consensus 139 l~~~l~~l-~~g~-tii-vtHd~~~~~~~ 164 (208)
T 3b85_A 139 MKMFLTRL-GFGS-KMV-VTGDITQVDLP 164 (208)
T ss_dssp HHHHHTTB-CTTC-EEE-EEEC-------
T ss_pred HHHHHHHh-cCCC-EEE-EECCHHHHhCc
Confidence 55666655 3444 488 99999887753
No 66
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.67 E-value=8.2e-20 Score=167.46 Aligned_cols=173 Identities=12% Similarity=0.036 Sum_probs=97.5
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|+||||+|++ |++++|+||||||||||+++|+ |+. | |.+.+ +..+. .
T Consensus 13 l~~isl~i~~----------------------G~~~~lvGpsGsGKSTLl~~L~----g~~-p---G~i~~-g~~~~--~ 59 (218)
T 1z6g_A 13 GLVPRGSMNN----------------------IYPLVICGPSGVGKGTLIKKLL----NEF-P---NYFYF-SVSCT--T 59 (218)
T ss_dssp ---------C----------------------CCCEEEECSTTSSHHHHHHHHH----HHS-T---TTEEE-CCCEE--C
T ss_pred ccCCceecCC----------------------CCEEEEECCCCCCHHHHHHHHH----hhC-C---CcEEE-eeccc--C
Confidence 6699999999 9999999999999999999999 876 5 77655 43221 1
Q ss_pred ccchhhhhccceeEecccCCCCCcc----eEEEEEEeccccCCCCcc-ccccCCceEEEEEEeeeCCCCeeeeCCccccH
Q psy14062 182 YRASKIRANKLSVLMHKSDQVGGVS----RCSVAIHFAQIIDKPNEE-YEIIPGTDLEIARTAFYDNSSYYTLNGKKVHF 256 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~~~~~~~----~~eV~~~~~~~~~~~~~~-~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr 256 (388)
..........++++||++..++..+ ..+...+..+.++..... .+........+. ...+||||+||
T Consensus 60 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il---------~~~lsggq~qR 130 (218)
T 1z6g_A 60 RKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLF---------EMNINGVKQLK 130 (218)
T ss_dssp SCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEE---------EECHHHHHHHT
T ss_pred CCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcEEE---------EecHHHHHHHH
Confidence 1111111246899999876654332 222111111222111100 001111111111 15689999999
Q ss_pred HHH-----HHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHh------hhHHHHHHHhHHHHHHHHHHH
Q psy14062 257 KEV-----AKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEK------LTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 257 ~~I-----a~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~------~~~ii~vtH~l~~l~~~~d~~ 320 (388)
..+ +++|.. .|.+++||||++++ +.+...+...+.+. ....++++|+++++....+++
T Consensus 131 ~~i~~~~~~~~ll~------~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~i 204 (218)
T 1z6g_A 131 KSTHIKNALYIFIK------PPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNY 204 (218)
T ss_dssp TCSSCCSCEEEEEE------CSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHH
T ss_pred HHhcCCCcEEEEEe------CcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHH
Confidence 988 566666 78889999999988 45555565554331 112456778888887777766
Q ss_pred HH
Q psy14062 321 VN 322 (388)
Q Consensus 321 ~~ 322 (388)
..
T Consensus 205 i~ 206 (218)
T 1z6g_A 205 LL 206 (218)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 67
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.66 E-value=5.2e-18 Score=150.78 Aligned_cols=139 Identities=10% Similarity=0.039 Sum_probs=87.5
Q ss_pred EEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchh-hhhccceeEecccCCCCCcceEEEEEEe
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLSVLMHKSDQVGGVSRCSVAIHF 214 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~-lr~~~i~~l~q~~~~~~~~~~~eV~~~~ 214 (388)
+++|+||||||||||+++|+ |+++ +.+.|... ..... ...+.+++++|... ..+.. +
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~----g~l~------i~~~g~~~----~~~~~~~~~~~ig~~~~~~~------~~~~~--~ 59 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIV----ERLG------KRAIGFWT----EEVRDPETKKRTGFRIITTE------GKKKI--F 59 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH----HHHG------GGEEEEEE----EEEC------CCEEEEEETT------CCEEE--E
T ss_pred EEEEECCCCCCHHHHHHHHH----HHhC------CcCCCEEh----hhhccccccceeEEEeecCc------HHHHH--H
Confidence 57999999999999999999 7763 33332211 01110 12356899998752 11111 1
Q ss_pred ccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHH-----HHHcCCCCCCCceEEecc--chhhH-H
Q psy14062 215 AQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKV-----LRDHGVDLLNNRFLILQE--PIAKM-E 286 (388)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~a-----L~~~Gi~~~~p~~LLlDE--P~s~L-e 286 (388)
... ... .. ...++.+..|||||+||+.+|++ |.. +|+++|+|| |++++ .
T Consensus 60 ~~~-~~~--------~~--------~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~------~p~llilDEigp~~~ld~ 116 (178)
T 1ye8_A 60 SSK-FFT--------SK--------KLVGSYGVNVQYFEELAIPILERAYREAKKD------RRKVIIIDEIGKMELFSK 116 (178)
T ss_dssp EET-TCC--------CS--------SEETTEEECHHHHHHHHHHHHHHHHHHHHHC------TTCEEEECCCSTTGGGCH
T ss_pred Hhh-cCC--------cc--------ccccccccCcCHHHHHHHHHHhhcccccccc------CCCEEEEeCCCCcccCCH
Confidence 111 000 00 12356678899999999999996 888 999999999 99999 3
Q ss_pred HHHhhhHHHHHHhhhHHHHHH---HhHHHHHHHHHH
Q psy14062 287 VLYGKYDEERTEKLTRVQLVE---TDLKALEPELRK 319 (388)
Q Consensus 287 ~i~~~l~el~~e~~~~ii~vt---H~l~~l~~~~d~ 319 (388)
.....+.+...+...++++++ |++..+...+++
T Consensus 117 ~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 117 KFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 333333333333333366666 588999888876
No 68
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.64 E-value=3.6e-18 Score=184.97 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=60.5
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPE 316 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~ 316 (388)
.++++..|||||+||+.||++|+. ...+|.+|||||||++| +.+.+.|.++++++. +|++|||+++.++.
T Consensus 799 lgq~~~~LSGGErQRV~LAraL~~---~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~-TVIvI~HdL~~i~~- 873 (916)
T 3pih_A 799 LGQPATTLSGGEAQRIKLASELRK---RDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGN-TVIVIEHNLDVIKN- 873 (916)
T ss_dssp TTCCSTTCCHHHHHHHHHHHHHTS---CCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC-EEEEECCCHHHHTT-
T ss_pred ccCCccCCCHHHHHHHHHHHHHhh---CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHh-
Confidence 467888999999999999999987 11135799999999999 777888888877666 49999999998754
Q ss_pred HHHH
Q psy14062 317 LRKA 320 (388)
Q Consensus 317 ~d~~ 320 (388)
||++
T Consensus 874 ADrI 877 (916)
T 3pih_A 874 ADHI 877 (916)
T ss_dssp CSEE
T ss_pred CCEE
Confidence 6654
No 69
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.63 E-value=7.8e-18 Score=164.32 Aligned_cols=75 Identities=20% Similarity=0.084 Sum_probs=50.5
Q ss_pred CCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHH
Q psy14062 243 NSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPEL 317 (388)
Q Consensus 243 ~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~ 317 (388)
+.++..|||||+|++.||+.++....-..+|++||||||+++| ..+...+.++..++. +++++||+.+ +...|
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~-~vi~~sH~~~-~~~~~ 320 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP-QVILVSHDEE-LKDAA 320 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSS-EEEEEESCGG-GGGGC
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCC-EEEEEEChHH-HHHhC
Confidence 4678899999999654443322211112289999999999999 556667766655554 5899999954 44445
Q ss_pred HH
Q psy14062 318 RK 319 (388)
Q Consensus 318 d~ 319 (388)
|+
T Consensus 321 d~ 322 (339)
T 3qkt_A 321 DH 322 (339)
T ss_dssp SE
T ss_pred CE
Confidence 43
No 70
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.62 E-value=9.2e-20 Score=165.41 Aligned_cols=161 Identities=13% Similarity=0.039 Sum_probs=86.8
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEE-
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAI- 212 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~- 212 (388)
|++++|+||||||||||+++|+ |++ +. +.+.. .+.+..........++++||++..++.++..+...
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~----gl~-~~----i~~~~---~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~ 87 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLR----ERI-PN----LHFSV---SATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLE 87 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH----HHS-TT----CEECC---CEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHH----hhC-Cc----eEEcc---cccccCCcccccCCCeeEecCHHHHHHHHhcCCcee
Confidence 9999999999999999999999 776 42 22211 11121111112356899999876554443322111
Q ss_pred ---Eec--cccCCCCcc-ccccCC--ceE---EEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccc
Q psy14062 213 ---HFA--QIIDKPNEE-YEIIPG--TDL---EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEP 281 (388)
Q Consensus 213 ---~~~--~~~~~~~~~-~~~~~~--~~l---~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP 281 (388)
++. ..++..... ...+.. ..+ ...+.....+..+..|| +|.. +|++++||||
T Consensus 88 ~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~------~p~~~~LDep 150 (207)
T 1znw_A 88 WAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLA------PPSWQDLQAR 150 (207)
T ss_dssp EEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEE------CSCHHHHHHH
T ss_pred ehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEE------CCCHHHHHHH
Confidence 111 111100000 000000 000 00000000011112222 3333 6888899999
Q ss_pred hhhH---------HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 282 IAKM---------EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 282 ~s~L---------e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
++++ .++...+.+++.+...+++++|||++++...||++...
T Consensus 151 ~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 151 LIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp HHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHh
Confidence 9875 45666777776543345999999999999999998653
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.61 E-value=7.5e-18 Score=168.18 Aligned_cols=193 Identities=16% Similarity=0.085 Sum_probs=115.7
Q ss_pred cccccccccCCCCC-cccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhh
Q psy14062 100 GEVEQISMMPPKGK-TEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLF 178 (388)
Q Consensus 100 ~~l~~vsl~i~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~ 178 (388)
.+|++|||+|++|+ .+--+...+.|+.+.. .+.+++|+||||||||||+++|+ |++ ++.+|.+.+.+..+
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~---~~~~valvG~nGaGKSTLln~L~----Gl~-~p~~GsI~~~g~~~- 107 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDS---SVLNVAVTGETGSGKSSFINTLR----GIG-NEEEGAAKTGVVEV- 107 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---CCEEEEEEECTTSSHHHHHHHHH----TCC-TTSTTSCCCCC----
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhccc---CCeEEEEECCCCCcHHHHHHHHh----CCC-CccCceEEECCeec-
Confidence 35679999999932 0000111122222221 13399999999999999999999 988 77799876554321
Q ss_pred hcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCc--cccH
Q psy14062 179 VFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGK--KVHF 256 (388)
Q Consensus 179 vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgG--q~qr 256 (388)
. + .++++|.+ .++.++..++.- + +....... ..+....+... ..... ||+| |+|+
T Consensus 108 ------t--~---~~~v~q~~-~~~~ltv~D~~g-~----~~~~~~~~----~~L~~~~L~~~-~~~~~-lS~G~~~kqr 164 (413)
T 1tq4_A 108 ------T--M---ERHPYKHP-NIPNVVFWDLPG-I----GSTNFPPD----TYLEKMKFYEY-DFFII-ISATRFKKND 164 (413)
T ss_dssp ---------C---CCEEEECS-SCTTEEEEECCC-G----GGSSCCHH----HHHHHTTGGGC-SEEEE-EESSCCCHHH
T ss_pred ------c--e---eEEecccc-ccCCeeehHhhc-c----cchHHHHH----HHHHHcCCCcc-CCeEE-eCCCCccHHH
Confidence 1 1 26788864 334444433211 1 00000000 00000011111 12233 8999 9999
Q ss_pred HHHHHHHHHcCCCC----CCCceEEeccchhhH-----HHHHhhhHHHHH-----Hh---hhHHHHHHHhHHH--HHHHH
Q psy14062 257 KEVAKVLRDHGVDL----LNNRFLILQEPIAKM-----EVLYGKYDEERT-----EK---LTRVQLVETDLKA--LEPEL 317 (388)
Q Consensus 257 ~~Ia~aL~~~Gi~~----~~p~~LLlDEP~s~L-----e~i~~~l~el~~-----e~---~~~ii~vtH~l~~--l~~~~ 317 (388)
+.||++|...+... .+|+++++|||+++| +++...+.++.. .+ ...+.+++|+++. +++.+
T Consensus 165 v~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~ 244 (413)
T 1tq4_A 165 IDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLM 244 (413)
T ss_dssp HHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHH
Confidence 99999999855432 258889999999998 667777777642 11 1236678998887 88889
Q ss_pred HHHHHHH
Q psy14062 318 RKAVNFL 324 (388)
Q Consensus 318 d~~~~y~ 324 (388)
+++.++.
T Consensus 245 d~I~~~L 251 (413)
T 1tq4_A 245 DKLISDL 251 (413)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 8887663
No 72
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.60 E-value=8.4e-18 Score=181.34 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=63.1
Q ss_pred eCCCCeeeeCCccccHHHHHHHHHHcCCCCCC---CceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHH
Q psy14062 241 YDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLN---NRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKA 312 (388)
Q Consensus 241 ~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~---p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~ 312 (388)
..++++..|||||+||+.||++|+. + |++|||||||++| ..+...+.++++++. +|+++||+++.
T Consensus 838 ~l~~~~~~LSGGekQRv~LAraL~~------~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~-TVIvisHdl~~ 910 (972)
T 2r6f_A 838 KLGQPATTLSGGEAQRVKLAAELHR------RSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD-TVLVIEHNLDV 910 (972)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHHHSS------CCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTC-EEEEECCCHHH
T ss_pred cccCchhhCCHHHHHHHHHHHHHhc------CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEcCCHHH
Confidence 3467899999999999999999997 5 4999999999999 778888888877665 49999999998
Q ss_pred HHHHHHHHHHH
Q psy14062 313 LEPELRKAVNF 323 (388)
Q Consensus 313 l~~~~d~~~~y 323 (388)
++ .||++...
T Consensus 911 i~-~aDrIivL 920 (972)
T 2r6f_A 911 IK-TADYIIDL 920 (972)
T ss_dssp HT-TCSEEEEE
T ss_pred HH-hCCEEEEE
Confidence 74 67775544
No 73
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.59 E-value=6.3e-19 Score=189.36 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=62.4
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCC---CceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLN---NRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKAL 313 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~---p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l 313 (388)
.++++..|||||+||+.||++|+. + |++|||||||++| +.+..++.++.+++. +|+++|||++.+
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~------~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~-tVIvisHdl~~i 796 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRR------SGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGN-TVIAVEHKMQVV 796 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSS------CCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTC-EEEEECCCHHHH
T ss_pred ccCCcccCCHHHHHHHHHHHHHHh------CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEcCCHHHH
Confidence 367899999999999999999988 6 6999999999999 778888888887766 499999999998
Q ss_pred HHHHHHHH
Q psy14062 314 EPELRKAV 321 (388)
Q Consensus 314 ~~~~d~~~ 321 (388)
..||++.
T Consensus 797 -~~aDrii 803 (842)
T 2vf7_A 797 -AASDWVL 803 (842)
T ss_dssp -TTCSEEE
T ss_pred -HhCCEEE
Confidence 5677654
No 74
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.59 E-value=2.1e-17 Score=178.80 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=63.0
Q ss_pred eCCCCeeeeCCccccHHHHHHHHHHcCCCCCC---CceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHH
Q psy14062 241 YDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLN---NRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKA 312 (388)
Q Consensus 241 ~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~---p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~ 312 (388)
..++++..|||||+||+.||++|+. + |++|||||||++| ..+...|.++++++. +|+++||+++.
T Consensus 856 ~l~~~~~~LSGGekQRv~LAraL~~------~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~-TVIvisHdl~~ 928 (993)
T 2ygr_A 856 RLGQPAPTLSGGEAQRVKLASELQK------RSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGN-TVIVIEHNLDV 928 (993)
T ss_dssp BTTCCGGGSCHHHHHHHHHHHHHSS------CCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC-EEEEECCCHHH
T ss_pred cccCccccCCHHHHHHHHHHHHHHh------CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEcCCHHH
Confidence 3467899999999999999999997 5 4999999999999 777888888877665 49999999998
Q ss_pred HHHHHHHHHHH
Q psy14062 313 LEPELRKAVNF 323 (388)
Q Consensus 313 l~~~~d~~~~y 323 (388)
++ .||++...
T Consensus 929 i~-~aDrIivL 938 (993)
T 2ygr_A 929 IK-TSDWIIDL 938 (993)
T ss_dssp HT-TCSEEEEE
T ss_pred HH-hCCEEEEE
Confidence 74 67775443
No 75
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.56 E-value=1.4e-16 Score=155.04 Aligned_cols=119 Identities=17% Similarity=0.142 Sum_probs=86.5
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIH 213 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~ 213 (388)
|++++|+||||||||||+++|+ +++ ++.+|.+.+.|...+ . .. . .. ..+.+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~----g~~-~~~~g~i~i~~~~e~--------------~--~~--~-~~----~~i~~~ 222 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIM----EFI-PKEERIISIEDTEEI--------------V--FK--H-HK----NYTQLF 222 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGG----GGS-CTTSCEEEEESSCCC--------------C--CS--S-CS----SEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHh----CCC-cCCCcEEEECCeecc--------------c--cc--c-ch----hEEEEE
Confidence 9999999999999999999999 888 677898776653210 0 00 0 00 000000
Q ss_pred eccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhHHHHHhhhH
Q psy14062 214 FAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKMEVLYGKYD 293 (388)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~Le~i~~~l~ 293 (388)
. .||++|+..|+++|.. +|+++|+|||++. ++...+.
T Consensus 223 ----------------------------~-------ggg~~~r~~la~aL~~------~p~ilildE~~~~--e~~~~l~ 259 (330)
T 2pt7_A 223 ----------------------------F-------GGNITSADCLKSCLRM------RPDRIILGELRSS--EAYDFYN 259 (330)
T ss_dssp ----------------------------C-------BTTBCHHHHHHHHTTS------CCSEEEECCCCST--HHHHHHH
T ss_pred ----------------------------e-------CCChhHHHHHHHHhhh------CCCEEEEcCCChH--HHHHHHH
Confidence 0 0899999999999999 9999999999984 4666666
Q ss_pred HHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14062 294 EERTEKLTRVQLVETDLKALEPELRKAVNFLE 325 (388)
Q Consensus 294 el~~e~~~~ii~vtH~l~~l~~~~d~~~~y~~ 325 (388)
.+.. +..++++++|+.+ +...++++.....
T Consensus 260 ~~~~-g~~tvi~t~H~~~-~~~~~dri~~l~~ 289 (330)
T 2pt7_A 260 VLCS-GHKGTLTTLHAGS-SEEAFIRLANMSS 289 (330)
T ss_dssp HHHT-TCCCEEEEEECSS-HHHHHHHHHHHHH
T ss_pred HHhc-CCCEEEEEEcccH-HHHHhhhheehhc
Confidence 6554 3334788999988 7788888876644
No 76
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.52 E-value=1.2e-17 Score=160.62 Aligned_cols=158 Identities=13% Similarity=0.093 Sum_probs=98.1
Q ss_pred cccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCc-
Q psy14062 104 QISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGY- 182 (388)
Q Consensus 104 ~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~- 182 (388)
.+||++.+ |++++|+|||||||||++++|+ |++ ++.+|++.+.+.+++-.+.
T Consensus 92 ~l~~~~~~----------------------g~vi~lvG~nGsGKTTll~~La----g~l-~~~~g~V~l~g~d~~r~~a~ 144 (302)
T 3b9q_A 92 ELQLGFRK----------------------PAVIMIVGVNGGGKTTSLGKLA----HRL-KNEGTKVLMAAGDTFRAAAS 144 (302)
T ss_dssp SCCCCSSS----------------------CEEEEEECCTTSCHHHHHHHHH----HHH-HHTTCCEEEECCCCSCHHHH
T ss_pred ccccccCC----------------------CcEEEEEcCCCCCHHHHHHHHH----HHH-HHcCCeEEEEeecccchhHH
Confidence 67888888 9999999999999999999999 888 4568999888876542210
Q ss_pred -cchhh-hhccceeEecccC-CCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHH
Q psy14062 183 -RASKI-RANKLSVLMHKSD-QVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEV 259 (388)
Q Consensus 183 -~~~~l-r~~~i~~l~q~~~-~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~I 259 (388)
+.... ++..+++++|++. .++..+..+..... .. .. + ....+...++....+..+..|| +||+.|
T Consensus 145 ~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~-~~-~~----~---d~~lldt~gl~~~~~~~~~eLS---kqr~~i 212 (302)
T 3b9q_A 145 DQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG-KE-EG----Y---DVVLCDTSGRLHTNYSLMEELI---ACKKAV 212 (302)
T ss_dssp HHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHH-HH-TT----C---SEEEECCCCCSSCCHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHH-HH-cC----C---cchHHhcCCCCcchhHHHHHHH---HHHHHH
Confidence 11112 2346999999876 55443332221110 00 00 0 0001111111122234566788 889999
Q ss_pred HHHHHHcCCCCCCCc--eEEeccchhhHHHHHhhhHHHHHHhhhHHHHHHH
Q psy14062 260 AKVLRDHGVDLLNNR--FLILQEPIAKMEVLYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 260 a~aL~~~Gi~~~~p~--~LLlDEP~s~Le~i~~~l~el~~e~~~~ii~vtH 308 (388)
|++|.. +|+ +||+| |+++++.+ ..+.++.+....+++++||
T Consensus 213 aral~~------~P~e~lLvLD-ptsglD~~-~~~~~~~~~~g~t~iiiTh 255 (302)
T 3b9q_A 213 GKIVSG------APNEILLVLD-GNTGLNML-PQAREFNEVVGITGLILTK 255 (302)
T ss_dssp HTTSTT------CCSEEEEEEE-GGGGGGGH-HHHHHHHHHTCCCEEEEEC
T ss_pred HHhhcc------CCCeeEEEEe-CCCCcCHH-HHHHHHHHhcCCCEEEEeC
Confidence 999998 999 99999 99998322 2234444332234788888
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.48 E-value=7.4e-17 Score=158.31 Aligned_cols=150 Identities=13% Similarity=0.092 Sum_probs=92.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCc--cchhh-hhccceeEecccC-CCCCcceEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGY--RASKI-RANKLSVLMHKSD-QVGGVSRCS 209 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~--~~~~l-r~~~i~~l~q~~~-~~~~~~~~e 209 (388)
|++++|+|||||||||++++|+ +++ ++.+|++.+.+.+++-.+. +.... ++..+++++|++. .++..+..+
T Consensus 157 g~vi~lvG~nGsGKTTll~~La----g~l-~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e 231 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLA----HRL-KNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSK 231 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHH----HHH-HHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH----hhc-cccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHH
Confidence 9999999999999999999999 888 4558999888876542110 11111 2346999999876 554333322
Q ss_pred EEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCc--eEEeccchhhHHH
Q psy14062 210 VAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNR--FLILQEPIAKMEV 287 (388)
Q Consensus 210 V~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~--~LLlDEP~s~Le~ 287 (388)
..... .. .. + ....+...++....+..+..|| +||+.|+++|.. +|+ +||+| |+++++.
T Consensus 232 ~l~~~-~~-~~----~---d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~------~P~e~lLvLD-pttglD~ 292 (359)
T 2og2_A 232 AVKRG-KE-EG----Y---DVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSG------APNEILLVLD-GNTGLNM 292 (359)
T ss_dssp HHHHH-HH-TT----C---SEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTT------CCSEEEEEEE-GGGGGGG
T ss_pred HHHHH-Hh-CC----C---HHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhc------CCCceEEEEc-CCCCCCH
Confidence 11100 00 00 0 0011111111122234556788 899999999999 999 99999 9999832
Q ss_pred HHhhhHHHHHHhhhHHHHHHH
Q psy14062 288 LYGKYDEERTEKLTRVQLVET 308 (388)
Q Consensus 288 i~~~l~el~~e~~~~ii~vtH 308 (388)
+ ..+..+.+....+++++||
T Consensus 293 ~-~~~~~~~~~~g~t~iiiTh 312 (359)
T 2og2_A 293 L-PQAREFNEVVGITGLILTK 312 (359)
T ss_dssp H-HHHHHHHHHTCCCEEEEES
T ss_pred H-HHHHHHHHhcCCeEEEEec
Confidence 2 2233444332234778888
No 78
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.47 E-value=1.9e-13 Score=137.36 Aligned_cols=154 Identities=24% Similarity=0.422 Sum_probs=87.3
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
||.+..|++.||++|++...+ ++.. +++++|+|||||||||||++
T Consensus 1 mm~i~~l~~~~~~~~~~~~~~-------------~~~~----------------------~~~~~i~G~nG~GKstll~a 45 (430)
T 1w1w_A 1 MGRLVGLELSNFKSYRGVTKV-------------GFGE----------------------SNFTSIIGPNGSGKSNMMDA 45 (430)
T ss_dssp -CCEEEEEEESCSSCCSEEEE-------------ECTT----------------------CSEEEEECSTTSSHHHHHHH
T ss_pred CCeeEEEEEeCEEEECCceeE-------------EecC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 356889999999999764332 2344 78999999999999999999
Q ss_pred hhhcccEEEcCCCCC--cceeehhhhhhcCccchhhhhccceeEecccCCC-CCcceEEEEEEeccccCCCCccccccCC
Q psy14062 154 MLFRFNAIIGPNGSG--KSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQV-GGVSRCSVAIHFAQIIDKPNEEYEIIPG 230 (388)
Q Consensus 154 i~~~~ngIiGpngSG--Ks~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~-~~~~~~eV~~~~~~~~~~~~~~~~~~~~ 230 (388)
|+ ++.++. ++ ........++ .|... ..+...+.+.... +....+.|...|.. ..
T Consensus 46 i~----~~~~~~-~~~~R~~~~~~lI~-~g~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~------------~~ 102 (430)
T 1w1w_A 46 IS----FVLGVR-SNHLRSNILKDLIY-RGVLN-----DENSDDYDNEGAASSNPQSAYVKAFYQK------------GN 102 (430)
T ss_dssp HH----HHTTC----------CGGGSC-CC------------------------CCEEEEEEEEEE------------TT
T ss_pred HH----hhhccc-cccchhhhHHHHHh-cCCcc-----ceeeEEecccccccCCcccccceeeecc------------CC
Confidence 99 666443 21 1111111111 11110 0111112111100 01123444444421 01
Q ss_pred ceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH
Q psy14062 231 TDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM 285 (388)
Q Consensus 231 ~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L 285 (388)
..+.+.|.....+.+.|.++|..++..++...+...++......++|+|.-...+
T Consensus 103 ~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~~~~l 157 (430)
T 1w1w_A 103 KLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQI 157 (430)
T ss_dssp EEEEEEEEEETTSCEEEEETTEEECHHHHHHHHHHTTCCTTTCTTEECTTCTTHH
T ss_pred cEEEEEEEEecCCceEEEECCEEccHHHHHHHHHhCCcCCCCcceeeehHhHHHH
Confidence 2344555544445567889999998888888888888877777889999766555
No 79
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.43 E-value=1.3e-16 Score=150.98 Aligned_cols=147 Identities=10% Similarity=0.059 Sum_probs=78.6
Q ss_pred EEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEec
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFA 215 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~ 215 (388)
.++|+||||||||||+++|+ |+. ++.+|++.+.|..+ ....+.+.+++++|++..++.+++.+...+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~----g~~-~~~~G~i~~~g~~i------~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~ 72 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLF----KSQ-VSRKASSWNREEKI------PKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGD 72 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHH----HHH-C------------C------CCCCSCCEEEESCC----CCEEEEECCCC--C
T ss_pred EEEEECCCCCCHHHHHHHHh----CCC-CCCCCccccCCccc------CcceeeeeeEEEeecCCCcCCceEEechhhhh
Confidence 47999999999999999999 888 66799977665432 11123356999999887776666654332221
Q ss_pred cccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-HHHHhhhHH
Q psy14062 216 QIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-EVLYGKYDE 294 (388)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-e~i~~~l~e 294 (388)
.... ......+.. .+ .....+.....|||||+||+.+|++++ .++++|||+.+| ..-...++.
T Consensus 73 ~~~~--~~~~~~i~~-~~----~~~~~~~~~~~LS~G~~qrv~iaRal~---------~lllldep~~gL~~lD~~~l~~ 136 (270)
T 3sop_A 73 QINN--ENCWEPIEK-YI----NEQYEKFLKEEVNIARKKRIPDTRVHC---------CLYFISPTGHSLRPLDLEFMKH 136 (270)
T ss_dssp CSBC--TTCSHHHHH-HH----HHHHHHHHHHHSCTTCCSSCCCCSCCE---------EEEEECCCSSSCCHHHHHHHHH
T ss_pred hccc--HHHHHHHHH-HH----HHHHHhhhHHhcCcccchhhhhheeee---------eeEEEecCCCcCCHHHHHHHHH
Confidence 1111 000000000 00 011233456789999999999998754 389999999888 222445555
Q ss_pred HHHHhhhHHHHHHHhHH
Q psy14062 295 ERTEKLTRVQLVETDLK 311 (388)
Q Consensus 295 l~~e~~~~ii~vtH~l~ 311 (388)
+.+. . +++++.|..+
T Consensus 137 L~~~-~-~vI~Vi~K~D 151 (270)
T 3sop_A 137 LSKV-V-NIIPVIAKAD 151 (270)
T ss_dssp HHTT-S-EEEEEETTGG
T ss_pred HHhc-C-cEEEEEeccc
Confidence 5544 3 3555544443
No 80
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=99.41 E-value=2.6e-12 Score=113.15 Aligned_cols=150 Identities=29% Similarity=0.407 Sum_probs=90.8
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
||+|..|.+.||++|++. ++++.+.+ | +++|+||||||||||+++
T Consensus 1 mM~i~~l~i~nf~~~~~~------------~~~~~~~~----------------------g-~~~i~G~NGsGKStll~a 45 (182)
T 3kta_A 1 MPYIEKLELKGFKSYGNK------------KVVIPFSK----------------------G-FTAIVGANGSGKSNIGDA 45 (182)
T ss_dssp -CEEEEEEEESBGGGCSS------------CEEEECCS----------------------S-EEEEEECTTSSHHHHHHH
T ss_pred CceEEEEEEeCeEeecCc------------cEEEecCC----------------------C-cEEEECCCCCCHHHHHHH
Confidence 478999999999988521 34455556 6 999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccC-CCCCcceEEEEEEeccccCCCCccccccCCce
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSD-QVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~-~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~ 232 (388)
|+ +++++ .+|++.-. .....++.... .......+.|.+.|..- ..... .....
T Consensus 46 i~----~~l~~-~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~~~v~~~f~~~----~~~~~-~~~~~ 99 (182)
T 3kta_A 46 IL----FVLGG-LSAKAMRA----------------SRISDLIFAGSKNEPPAKYAEVAIYFNNE----DRGFP-IDEDE 99 (182)
T ss_dssp HH----HHTTC-CCTGGGTC----------------SSGGGGBCCCC----CCSCEEEEEEEECT----TCCSS-SSSSE
T ss_pred HH----HHHcC-Cccccccc----------------ccchheeecccccCCCCceEEEEEEEeCC----Ccccc-cCCcE
Confidence 99 66643 24442111 11111111111 00112334555555321 11111 11224
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM 285 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L 285 (388)
+.+.|.....+...+.++|......++...|..+|+..++.. ++.|.-...+
T Consensus 100 ~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~~~-~~~qg~~~~l 151 (182)
T 3kta_A 100 VVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGYN-IVLQGDITKF 151 (182)
T ss_dssp EEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTCTT-EECTTCTTHH
T ss_pred EEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCCCE-EEEcccHHHH
Confidence 556665544456678889988889999999999999887664 5677665554
No 81
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.38 E-value=5.7e-16 Score=149.49 Aligned_cols=117 Identities=9% Similarity=0.004 Sum_probs=72.9
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIH 213 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~ 213 (388)
|++++|+||||||||||+++|+ |++.| ..|+ ..+++|+|++..++. +..+....
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~----gll~~-~~G~--------------------~~v~~v~qd~~~~~~-t~~e~~~~ 143 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQ----ALLAR-WDHH--------------------PRVDLVTTDGFLYPN-AELQRRNL 143 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH----HHHHT-STTC--------------------CCEEEEEGGGGBCCH-HHHHHTTC
T ss_pred CEEEEEECCCCchHHHHHHHHH----hhccc-cCCC--------------------CeEEEEecCccCCcc-cHHHHHHH
Confidence 9999999999999999999999 88833 3443 247778887665543 32221111
Q ss_pred eccccCCCCc-cccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH
Q psy14062 214 FAQIIDKPNE-EYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM 285 (388)
Q Consensus 214 ~~~~~~~~~~-~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L 285 (388)
+. .++.... ...... ..+...+ ....+..+..||||++||+.+|+++.. +|++||+|||+..+
T Consensus 144 ~~-~~g~~~~~d~~~~~-~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~------~p~ilIlDep~~~~ 207 (312)
T 3aez_A 144 MH-RKGFPESYNRRALM-RFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVR------HPDILILEGLNVLQ 207 (312)
T ss_dssp TT-CTTSGGGBCHHHHH-HHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEEC------SCSEEEEECTTTTC
T ss_pred HH-hcCCChHHHHHHHH-HHHHHhC-CCcccCCcccCChhhhhhhhhHHHhcc------CCCEEEECCccccC
Confidence 10 0111100 000000 0011001 111234567899999999999999888 99999999999874
No 82
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.35 E-value=6.9e-14 Score=131.56 Aligned_cols=120 Identities=18% Similarity=0.185 Sum_probs=77.3
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCC-CCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNG-SGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAI 212 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpng-SGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~ 212 (388)
|++++|+||||||||||+++|+ +++ ++. +|++.+++.. ++++++... . +
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~----g~~-~~~~~G~I~~~g~~---------------i~~~~~~~~-----~-----~ 74 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMI----DYI-NQTKSYHIITIEDP---------------IEYVFKHKK-----S-----I 74 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHH----HHH-HHHCCCEEEEEESS---------------CCSCCCCSS-----S-----E
T ss_pred CCEEEEECCCCccHHHHHHHHH----HhC-CCCCCCEEEEcCCc---------------ceeecCCcc-----e-----e
Confidence 9999999999999999999999 887 444 8987665432 233333210 0 0
Q ss_pred EeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhHHHHHhhh
Q psy14062 213 HFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKMEVLYGKY 292 (388)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~Le~i~~~l 292 (388)
..+. .. +..... -+..|+++|.. +|+++++|||+. .+.+...+
T Consensus 75 v~q~---------------------~~---gl~~~~------l~~~la~aL~~------~p~illlDEp~D-~~~~~~~l 117 (261)
T 2eyu_A 75 VNQR---------------------EV---GEDTKS------FADALRAALRE------DPDVIFVGEMRD-LETVETAL 117 (261)
T ss_dssp EEEE---------------------EB---TTTBSC------HHHHHHHHHHH------CCSEEEESCCCS-HHHHHHHH
T ss_pred eeHH---------------------Hh---CCCHHH------HHHHHHHHHhh------CCCEEEeCCCCC-HHHHHHHH
Confidence 0000 00 000011 17899999999 999999999983 33333344
Q ss_pred HHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 293 DEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 293 ~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+. ...+. ++++++|+.+ +...++++...
T Consensus 118 ~~-~~~g~-~vl~t~H~~~-~~~~~dri~~l 145 (261)
T 2eyu_A 118 RA-AETGH-LVFGTLHTNT-AIDTIHRIVDI 145 (261)
T ss_dssp HH-HHTTC-EEEEEECCSS-HHHHHHHHHHT
T ss_pred HH-HccCC-EEEEEeCcch-HHHHHHHHhhh
Confidence 33 23344 4788899977 66778877544
No 83
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.34 E-value=9.9e-16 Score=142.41 Aligned_cols=151 Identities=12% Similarity=0.138 Sum_probs=79.2
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
|+||||++.+ |.+++|+||||||||||+++|+ +++ |.+.+.
T Consensus 15 l~~isl~i~~----------------------g~iigI~G~~GsGKSTl~k~L~----~~l-----G~~~~~-------- 55 (245)
T 2jeo_A 15 TENLYFQSMR----------------------PFLIGVSGGTASGKSTVCEKIM----ELL-----GQNEVE-------- 55 (245)
T ss_dssp --------CC----------------------SEEEEEECSTTSSHHHHHHHHH----HHH-----TGGGSC--------
T ss_pred ecceeccCCC----------------------CEEEEEECCCCCCHHHHHHHHH----HHh-----chhccc--------
Confidence 4599999999 9999999999999999999999 765 332221
Q ss_pred ccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCC-cccc--ccCCceEEEEEEeeeCCCCeeeeCCccccHHH
Q psy14062 182 YRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPN-EEYE--IIPGTDLEIARTAFYDNSSYYTLNGKKVHFKE 258 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~-~~~~--~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~ 258 (388)
. .++.+++++++. .++.++..++.......+.... .... ... ..+. .+..........||+|++||+.
T Consensus 56 ----~-~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~--~l~~~~~~~~~~ls~g~~~r~~ 126 (245)
T 2jeo_A 56 ----Q-RQRKVVILSQDR-FYKVLTAEQKAKALKGQYNFDHPDAFDNDLMH-RTLK--NIVEGKTVEVPTYDFVTHSRLP 126 (245)
T ss_dssp ----G-GGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHH-HHHH--HHHTTCCEEECCEETTTTEECS
T ss_pred ----c-cCCceEEEeCCc-CccccCHhHhhhhhccCCCCCCcccccHHHHH-HHHH--HHHCCCCeecccccccccCccC
Confidence 1 234588888874 3333332221110001111000 0000 000 0000 0111223456679999999986
Q ss_pred HHHHHHHcCCCCCCCceEEeccchhhH-HHHHhhhHHHHHHhhhHHHHHHHhHHHHH
Q psy14062 259 VAKVLRDHGVDLLNNRFLILQEPIAKM-EVLYGKYDEERTEKLTRVQLVETDLKALE 314 (388)
Q Consensus 259 Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-e~i~~~l~el~~e~~~~ii~vtH~l~~l~ 314 (388)
+ +++.. .|+++|+|||.... ..+.... +. +|++++|+...+.
T Consensus 127 ~-~~~~~------~~~~lilDg~~~~~~~~l~~~~------~~-~i~v~th~~~~~~ 169 (245)
T 2jeo_A 127 E-TTVVY------PADVVLFEGILVFYSQEIRDMF------HL-RLFVDTDSDVRLS 169 (245)
T ss_dssp S-CEEEC------CCSEEEEECTTTTTSHHHHTTC------SE-EEEEECCHHHHHH
T ss_pred c-eEEec------CCCEEEEeCccccccHHHHHhc------Ce-EEEEECCHHHHHH
Confidence 5 23344 68999999998765 3332221 22 4788888744443
No 84
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.33 E-value=1.7e-15 Score=156.11 Aligned_cols=149 Identities=13% Similarity=0.077 Sum_probs=93.2
Q ss_pred ccccccc-cCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh--hhhcccEEEcCCCCCcceeehhhh
Q psy14062 101 EVEQISM-MPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS--MLFRFNAIIGPNGSGKSNVIDSML 177 (388)
Q Consensus 101 ~l~~vsl-~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~--i~~~~ngIiGpngSGKs~i~da~i 177 (388)
+|++||| .|++ |++++|+||||||||||+++ ++ |++ ++++|.+.+.+...
T Consensus 27 ~Ld~i~~G~i~~----------------------Ge~~~l~G~nGsGKSTL~~~~ll~----Gl~-~~~~g~i~v~g~~~ 79 (525)
T 1tf7_A 27 GFDDISHGGLPI----------------------GRSTLVSGTSGTGKTLFSIQFLYN----GII-EFDEPGVFVTFEET 79 (525)
T ss_dssp THHHHTTSSEET----------------------TSEEEEEESTTSSHHHHHHHHHHH----HHH-HHCCCEEEEESSSC
T ss_pred hHHHhcCCCCCC----------------------CeEEEEEcCCCCCHHHHHHHHHHH----HHH-hCCCCEEEEEEeCC
Confidence 4569999 9999 99999999999999999999 67 887 66789876655431
Q ss_pred hhcCccchhhhhccceeEecccCCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHH
Q psy14062 178 FVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFK 257 (388)
Q Consensus 178 ~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~ 257 (388)
. .....+++.++++||++..... +.. + .... ... ....+ ....| . ....
T Consensus 80 ~----~~~~~~~~~~g~~~q~~~~~~~-----l~~-~-~~~~-~~~-----~~~~l-----------~~~~l--~-~~~~ 128 (525)
T 1tf7_A 80 P----QDIIKNARSFGWDLAKLVDEGK-----LFI-L-DASP-DPE-----GQEVV-----------GGFDL--S-ALIE 128 (525)
T ss_dssp H----HHHHHHHGGGTCCHHHHHHTTS-----EEE-E-ECCC-CSS-----CCSCC-----------SSHHH--H-HHHH
T ss_pred H----HHHHHHHHHcCCChHHhhccCc-----EEE-E-ecCc-ccc-----hhhhh-----------cccCH--H-HHHH
Confidence 0 0011234568999998653221 111 1 0000 000 00000 01111 1 1233
Q ss_pred HHHHHHHHcCCCCCCCceEEeccchhhH----------HHHHhhhHHHHHHhhhHHHHHHHhHHHH
Q psy14062 258 EVAKVLRDHGVDLLNNRFLILQEPIAKM----------EVLYGKYDEERTEKLTRVQLVETDLKAL 313 (388)
Q Consensus 258 ~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L----------e~i~~~l~el~~e~~~~ii~vtH~l~~l 313 (388)
.+...|.. .+|+++++|||++.+ +.+..+++.+++.+. ++++++|+++.+
T Consensus 129 ~~~~~LS~-----g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~-tvl~itH~~~~~ 188 (525)
T 1tf7_A 129 RINYAIQK-----YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGA-TTVMTTERIEEY 188 (525)
T ss_dssp HHHHHHHH-----HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTC-EEEEEEECSSSS
T ss_pred HHHHHHHH-----cCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCC-EEEEEecCCCCc
Confidence 44445532 168899999999743 667778888877665 499999998874
No 85
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.30 E-value=3.2e-14 Score=131.22 Aligned_cols=41 Identities=12% Similarity=-0.027 Sum_probs=30.6
Q ss_pred CCceEEeccchhhHH----------HHHhhhHHHHHHhhhHHHHHHHhHHHH
Q psy14062 272 NNRFLILQEPIAKME----------VLYGKYDEERTEKLTRVQLVETDLKAL 313 (388)
Q Consensus 272 ~p~~LLlDEP~s~Le----------~i~~~l~el~~e~~~~ii~vtH~l~~l 313 (388)
+|+++++|||++.+. .+..+++.+++.+. ++++++|+++.+
T Consensus 135 ~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~-tii~vtH~~~~~ 185 (251)
T 2ehv_A 135 NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGV-TTILTTEAPDPQ 185 (251)
T ss_dssp TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCC-EEEEEECCC---
T ss_pred CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCC-eEEEEECCCCCC
Confidence 799999999999872 36667777766665 499999998887
No 86
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.29 E-value=9.1e-14 Score=150.78 Aligned_cols=68 Identities=9% Similarity=-0.038 Sum_probs=47.9
Q ss_pred CeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHH-hhhHHHHHHhhhHHHHHHHhHHHHHHHHH
Q psy14062 245 SYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLY-GKYDEERTEKLTRVQLVETDLKALEPELR 318 (388)
Q Consensus 245 ~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~-~~l~el~~e~~~~ii~vtH~l~~l~~~~d 318 (388)
....+|+|++++..++++ +. +|.++|||||++++ ..+. ..+..+.++...+++++||+++.+ ..++
T Consensus 732 ~~stfs~em~~~~~il~~-a~------~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~ 803 (918)
T 3thx_B 732 GRSTFMEELTDTAEIIRK-AT------SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEK 803 (918)
T ss_dssp --CCHHHHHHHHHHHHHH-CC------TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHH
T ss_pred hHHHhhHHHHHHHHHHHh-cc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHh
Confidence 345678899998888877 44 79999999999999 3444 455566553334599999997654 4565
Q ss_pred HH
Q psy14062 319 KA 320 (388)
Q Consensus 319 ~~ 320 (388)
+.
T Consensus 804 ~~ 805 (918)
T 3thx_B 804 NY 805 (918)
T ss_dssp HT
T ss_pred hc
Confidence 54
No 87
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.28 E-value=2.1e-14 Score=137.73 Aligned_cols=39 Identities=31% Similarity=0.451 Sum_probs=35.8
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcc
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKS 170 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs 170 (388)
|++|||+|++ |++++|+||||||||||+++|+ |++ +|++
T Consensus 116 L~~vsl~i~~----------------------Ge~vaIvGpsGsGKSTLl~lL~----gl~----~G~I 154 (305)
T 2v9p_A 116 LKLWLKGIPK----------------------KNCLAFIGPPNTGKSMLCNSLI----HFL----GGSV 154 (305)
T ss_dssp HHHHHHTCTT----------------------CSEEEEECSSSSSHHHHHHHHH----HHH----TCEE
T ss_pred hccceEEecC----------------------CCEEEEECCCCCcHHHHHHHHh----hhc----CceE
Confidence 4599999999 9999999999999999999999 776 6886
No 88
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.26 E-value=1.4e-15 Score=153.24 Aligned_cols=178 Identities=13% Similarity=0.043 Sum_probs=107.6
Q ss_pred cEEEEEEEeeceEEec-CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHh
Q psy14062 74 RLIITKIVAFNFKSYA-GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~-~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~ 152 (388)
.+.+.+++ ++|+ +..+| +++ |+|.+ |++++|+||||||||||++
T Consensus 131 ~l~~~~v~----~~~~tg~~vl--------d~v-l~i~~----------------------Gq~~~IvG~sGsGKSTLl~ 175 (438)
T 2dpy_A 131 PLQRTPIE----HVLDTGVRAI--------NAL-LTVGR----------------------GQRMGLFAGSGVGKSVLLG 175 (438)
T ss_dssp TTTSCCCC----SBCCCSCHHH--------HHH-SCCBT----------------------TCEEEEEECTTSSHHHHHH
T ss_pred ceEEeccc----eecCCCceEE--------eee-EEecC----------------------CCEEEEECCCCCCHHHHHH
Confidence 34445555 5676 44454 499 99999 9999999999999999999
Q ss_pred hhhhcccEEEcCCCCCcceeehh---hhhhcCcc--chhhhhccceeEeccc-CCCCCcceEEEEEEeccccCCCCcccc
Q psy14062 153 SMLFRFNAIIGPNGSGKSNVIDS---MLFVFGYR--ASKIRANKLSVLMHKS-DQVGGVSRCSVAIHFAQIIDKPNEEYE 226 (388)
Q Consensus 153 ~i~~~~ngIiGpngSGKs~i~da---~i~vlg~~--~~~lr~~~i~~l~q~~-~~~~~~~~~eV~~~~~~~~~~~~~~~~ 226 (388)
+|+ ++. ++++|.+.+.|. .+.-+... ......+.+++++|.. ..++..++.++.......+...
T Consensus 176 ~Ia----g~~-~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~----- 245 (438)
T 2dpy_A 176 MMA----RYT-RADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR----- 245 (438)
T ss_dssp HHH----HHS-CCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHh----ccc-CCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-----
Confidence 999 887 667898877765 23211101 0112234589999853 2223333332222111111110
Q ss_pred ccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHH---H
Q psy14062 227 IIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERT---E 298 (388)
Q Consensus 227 ~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~---e 298 (388)
......+ . .+...+|+|+ ||+.+| +. +|++ +++| ..+..++.++.+ +
T Consensus 246 --~~~v~~~---l----d~l~~lS~g~-qrvslA---l~------~p~~------t~glD~~~~~~l~~ll~r~~~~~~~ 300 (438)
T 2dpy_A 246 --GQHVLLI---M----DSLTRYAMAQ-REIALA---IG------EPPA------TKGYPPSVFAKLPALVERAGNGIHG 300 (438)
T ss_dssp --TCEEEEE---E----ECHHHHHHHH-HHHHHH---TT------CCCC------SSSCCTTHHHHHHHHHTTCSCCSTT
T ss_pred --CCCHHHH---H----HhHHHHHHHH-HHHHHH---hC------CCcc------cccCCHHHHHHHHHHHHHHHhccCC
Confidence 0111111 1 1267789999 888888 33 6765 6666 456666655544 2
Q ss_pred -hh----hHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 299 -KL----TRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 299 -~~----~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+. .++++++||++ ...+|++.-.
T Consensus 301 ~GsiT~~~tVlv~tHdl~--~~iad~v~~l 328 (438)
T 2dpy_A 301 GGSITAFYTVLTEGDDQQ--DPIADSARAI 328 (438)
T ss_dssp SCEEEEEEEEECSSSCSC--CHHHHHHHHH
T ss_pred CCcccceeEEEEeCCCcc--chhhceEEEE
Confidence 31 15889999998 6778877655
No 89
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.26 E-value=2.9e-13 Score=148.79 Aligned_cols=160 Identities=12% Similarity=0.058 Sum_probs=92.3
Q ss_pred CcEEEEE-----EEeeceEEe-cCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCC
Q psy14062 73 PRLIITK-----IVAFNFKSY-AGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSG 146 (388)
Q Consensus 73 ~~l~i~~-----l~~~~fksy-~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsG 146 (388)
+++.+.+ +. ++| ++..++ +||||.+.+.. .....|++++|+||||||
T Consensus 749 ~~l~i~~~rHP~l~----~~~~~~~~v~--------ndi~l~~~~~~---------------~~~~~g~i~~ItGpNgsG 801 (1022)
T 2o8b_B 749 PFLELKGSRHPCIT----KTFFGDDFIP--------NDILIGCEEEE---------------QENGKAYCVLVTGPNMGG 801 (1022)
T ss_dssp CCEEEEEECCCC----------CCCCCC--------EEEEESCCCSC---------------C---CCCEEEEECCTTSS
T ss_pred ceEEEEeccccEEE----EEecCCceEe--------eeeeecccccc---------------ccCCCCcEEEEECCCCCC
Confidence 4677777 66 667 444454 49999986400 000016899999999999
Q ss_pred hhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccce-eEecccCCCCCcceEEEEEEeccccCCCCccc
Q psy14062 147 KSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLS-VLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEY 225 (388)
Q Consensus 147 KSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~-~l~q~~~~~~~~~~~eV~~~~~~~~~~~~~~~ 225 (388)
||||||++. -+. + . ..+| +|||.+.. ++..+.. +.++ +
T Consensus 802 KSTlLr~iG----l~~-~-----------------------~-aqiG~~Vpq~~~~---l~v~d~I--~~ri-g------ 840 (1022)
T 2o8b_B 802 KSTLMRQAG----LLA-V-----------------------M-AQMGCYVPAEVCR---LTPIDRV--FTRL-G------ 840 (1022)
T ss_dssp HHHHHHHHH----HHH-H-----------------------H-HTTTCCEESSEEE---ECCCSBE--EEEC-C------
T ss_pred hHHHHHHHH----HHH-H-----------------------H-hheeEEeccCcCC---CCHHHHH--HHHc-C------
Confidence 999999885 111 0 1 1355 88876421 1111111 1000 0
Q ss_pred cccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH------HHHHhhhHHHHHHh
Q psy14062 226 EIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM------EVLYGKYDEERTEK 299 (388)
Q Consensus 226 ~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L------e~i~~~l~el~~e~ 299 (388)
...........+++++.+ +.++++++. +|.++|||||++++ ..+...+..+.++.
T Consensus 841 ------------~~d~~~~~~stf~~em~~-~a~al~la~------~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~ 901 (1022)
T 2o8b_B 841 ------------ASDRIMSGESTFFVELSE-TASILMHAT------AHSLVLVDELGRGTATFDGTAIANAVVKELAETI 901 (1022)
T ss_dssp ---------------------CHHHHHHHH-HHHHHHHCC------TTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTS
T ss_pred ------------CHHHHhhchhhhHHHHHH-HHHHHHhCC------CCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcC
Confidence 000011122345565553 677777777 89999999999887 22456777776652
Q ss_pred hhHHHHHHHhHHHHHHHHHH
Q psy14062 300 LTRVQLVETDLKALEPELRK 319 (388)
Q Consensus 300 ~~~ii~vtH~l~~l~~~~d~ 319 (388)
..+++++||+++.+...+++
T Consensus 902 g~~vl~~TH~~el~~~~~d~ 921 (1022)
T 2o8b_B 902 KCRTLFSTHYHSLVEDYSQN 921 (1022)
T ss_dssp CCEEEEECCCHHHHHHTSSC
T ss_pred CCEEEEEeCCHHHHHHhCCc
Confidence 33589999999998877654
No 90
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.26 E-value=3.1e-13 Score=132.61 Aligned_cols=57 Identities=9% Similarity=-0.021 Sum_probs=44.5
Q ss_pred CCCCee-eeCCccccHHHHHHHHH---------HcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHH
Q psy14062 242 DNSSYY-TLNGKKVHFKEVAKVLR---------DHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLV 306 (388)
Q Consensus 242 ~~~~~~-~LSgGq~qr~~Ia~aL~---------~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~v 306 (388)
.+.++. .+||||+|++.||++|+ . .|++||||||+++| ..+.+.+.++. .+++.+
T Consensus 258 ~~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~------~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~ 327 (359)
T 2o5v_A 258 GDFPASDYASRGEGRTVALALRRAELELLREKFG------EDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTG 327 (359)
T ss_dssp TTEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHS------SCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEE
T ss_pred CCcchhhhCCHHHHHHHHHHHHHHHhhhhhhccC------CCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEE
Confidence 355666 79999999999999999 6 89999999999999 44555554432 247777
Q ss_pred HH
Q psy14062 307 ET 308 (388)
Q Consensus 307 tH 308 (388)
||
T Consensus 328 th 329 (359)
T 2o5v_A 328 TE 329 (359)
T ss_dssp SS
T ss_pred Ee
Confidence 77
No 91
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.23 E-value=5.8e-14 Score=134.90 Aligned_cols=151 Identities=15% Similarity=0.062 Sum_probs=90.8
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCc--cchhh-hhccceeEecccCCCCCcceEEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGY--RASKI-RANKLSVLMHKSDQVGGVSRCSV 210 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~--~~~~l-r~~~i~~l~q~~~~~~~~~~~eV 210 (388)
|++++|+||||||||||+++|+ +++ ++.+|++.+.+.+++-.+. +.... ++..+++++|.+...|..+..+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~La----gll-~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~ 176 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG----RYY-QNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDA 176 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH----HHH-HTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH----HHH-HhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHH
Confidence 8999999999999999999999 888 5568999998887653321 11112 23468999998766554332211
Q ss_pred EEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCc--eEEeccchhhHHHH
Q psy14062 211 AIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNR--FLILQEPIAKMEVL 288 (388)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~--~LLlDEP~s~Le~i 288 (388)
.... ...+ . ...+..+..+.+.....++...+||..||+++.. .|. ++++| |+++. ++
T Consensus 177 v~~~-~~~~----------~-d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~------~P~~~lLvLD-a~t~~-~~ 236 (304)
T 1rj9_A 177 VQAM-KARG----------Y-DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPE------EPKEVWLVLD-AVTGQ-NG 236 (304)
T ss_dssp HHHH-HHHT----------C-SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTT------CCSEEEEEEE-TTBCT-HH
T ss_pred HHHH-HhCC----------C-CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcC------CCCeEEEEEc-HHHHH-HH
Confidence 1000 0000 0 1112222222222222333344789999999998 898 56778 44442 45
Q ss_pred HhhhHHHHHHhhhHHHHHHHh
Q psy14062 289 YGKYDEERTEKLTRVQLVETD 309 (388)
Q Consensus 289 ~~~l~el~~e~~~~ii~vtH~ 309 (388)
...+..+.+....+++++||+
T Consensus 237 ~~~~~~~~~~~~~t~iivTh~ 257 (304)
T 1rj9_A 237 LEQAKKFHEAVGLTGVIVTKL 257 (304)
T ss_dssp HHHHHHHHHHHCCSEEEEECT
T ss_pred HHHHHHHHHHcCCcEEEEECC
Confidence 555556555433347778886
No 92
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.20 E-value=5.4e-13 Score=145.11 Aligned_cols=69 Identities=12% Similarity=0.006 Sum_probs=46.6
Q ss_pred eeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHH-HhhhHHHHHHhhhHHHHHHHhHHHHHHHHHH
Q psy14062 246 YYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVL-YGKYDEERTEKLTRVQLVETDLKALEPELRK 319 (388)
Q Consensus 246 ~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i-~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~ 319 (388)
...+|+++.++..+++++... .+|.++|||||++++ ..+ ...+..+.++...+++++||+.+. ...+++
T Consensus 719 ~~~lStf~~e~~~~a~il~~a----~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el-~~lad~ 793 (934)
T 3thx_A 719 LKGVSTFMAEMLETASILRSA----TKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHEL-TALANQ 793 (934)
T ss_dssp ----CHHHHHHHHHHHHHHHC----CTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGG-GGGGGT
T ss_pred HHhHhhhHHHHHHHHHHHHhc----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHH-HHHhcc
Confidence 456788889999999988542 279999999999998 334 345556655433458999999654 445554
No 93
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.17 E-value=9.8e-13 Score=129.00 Aligned_cols=56 Identities=11% Similarity=0.019 Sum_probs=44.4
Q ss_pred HHHHHHHHcCCCCCCCceEEeccchhhHHHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 258 EVAKVLRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 258 ~Ia~aL~~~Gi~~~~p~~LLlDEP~s~Le~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
.++++|.. +|++||+|||+.. +.+..+.+....+.+ ++.++|+.+.+ ..++++...
T Consensus 188 ~La~aL~~------~PdvillDEp~d~--e~~~~~~~~~~~G~~-vl~t~H~~~~~-~~~dRli~l 243 (356)
T 3jvv_A 188 ALRSALRE------DPDIILVGEMRDL--ETIRLALTAAETGHL-VFGTLHTTSAA-KTIDRVVDV 243 (356)
T ss_dssp HHHHHTTS------CCSEEEESCCCSH--HHHHHHHHHHHTTCE-EEEEESCSSHH-HHHHHHHHT
T ss_pred HHHHHhhh------CcCEEecCCCCCH--HHHHHHHHHHhcCCE-EEEEEccChHH-HHHHHHhhh
Confidence 89999999 9999999999964 345555555666665 88999999877 778888766
No 94
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.16 E-value=1.5e-12 Score=139.16 Aligned_cols=61 Identities=13% Similarity=0.179 Sum_probs=43.0
Q ss_pred eeCCccccHHHHHHHHHHcCCCCCCCceEEeccc---hhhHHH--H-HhhhHHHHHHhhhHHHHHHHhHHHH
Q psy14062 248 TLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEP---IAKMEV--L-YGKYDEERTEKLTRVQLVETDLKAL 313 (388)
Q Consensus 248 ~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP---~s~Le~--i-~~~l~el~~e~~~~ii~vtH~l~~l 313 (388)
.+|+++++++.+++++.. ..+|+++||||| |++++- + ...+..+.+.+. +++++||+.+.+
T Consensus 635 g~S~~~~e~~~la~il~~----a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~-~vl~~TH~~~l~ 701 (765)
T 1ewq_A 635 GKSTFMVEMEEVALILKE----ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRA-YTLFATHYFELT 701 (765)
T ss_dssp CCSHHHHHHHHHHHHHHH----CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTC-EEEEECCCHHHH
T ss_pred cccHHHHHHHHHHHHHHh----ccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCC-EEEEEeCCHHHH
Confidence 357889999999999943 128999999999 888822 2 233444444343 589999997664
No 95
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.15 E-value=3.7e-13 Score=120.52 Aligned_cols=138 Identities=12% Similarity=0.098 Sum_probs=80.9
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIH 213 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~ 213 (388)
|++++|+||||||||||+++|+ |++ + .+| +.+.+... .+... .++.+++++|.... .. .+...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~----g~~-~-~~G-i~~~g~~~----~~~~~-~~~~ig~~~~~~~g----~~-~~l~~ 63 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKAS----EVL-K-SSG-VPVDGFYT----EEVRQ-GGRRIGFDVVTLSG----TR-GPLSR 63 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHH----HHH-H-HTT-CCCEEEEC----CEEET-TSSEEEEEEEETTS----CE-EEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHH----hhc-c-cCC-EEEcCEec----chhHh-hhceEEEEEEeccc----ce-ehhhc
Confidence 5789999999999999999999 888 5 678 77665322 11122 23568899887522 11 11111
Q ss_pred eccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHH-HH---HHHHcCCCCCCCceEEecc--chhhH-H
Q psy14062 214 FAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEV-AK---VLRDHGVDLLNNRFLILQE--PIAKM-E 286 (388)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~I-a~---aL~~~Gi~~~~p~~LLlDE--P~s~L-e 286 (388)
+. ...... +.....+.....+|+|+++++.. ++ |+.. +|+++|+|| |+..+ .
T Consensus 64 ~~----~~~~~~-----------~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~------~~dvlilDE~g~~~~~~~ 122 (189)
T 2i3b_A 64 VG----LEPPPG-----------KRECRVGQYVVDLTSFEQLALPVLRNADCSSGP------GQRVCVIDEIGKMELFSQ 122 (189)
T ss_dssp CC----CCCCSS-----------SCCEESSSSEECHHHHHTTTTTTTCCCCCCCSS------CCCCEEECCCSTTTTTCS
T ss_pred cc----ccCCcc-----------ccccccceEEEcchHHHHHHHHHHhhhhHhhcc------CCCEEEEeCCCccccccH
Confidence 10 000000 00012345566788888866532 22 2333 799999999 77655 4
Q ss_pred HHHhhhHHHHHHhhhHHH----HHHHhH
Q psy14062 287 VLYGKYDEERTEKLTRVQ----LVETDL 310 (388)
Q Consensus 287 ~i~~~l~el~~e~~~~ii----~vtH~l 310 (388)
.....+.++.+.... ++ .++|+.
T Consensus 123 ~~~~~l~~~l~~~~~-~ilgti~vsh~~ 149 (189)
T 2i3b_A 123 LFIQAVRQTLSTPGT-IILGTIPVPKGK 149 (189)
T ss_dssp HHHHHHHHHHHCSSC-CEEEECCCCCSS
T ss_pred HHHHHHHHHHhCCCc-EEEEEeecCCCC
Confidence 456666666554433 44 344875
No 96
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.14 E-value=2e-10 Score=118.05 Aligned_cols=110 Identities=18% Similarity=0.278 Sum_probs=69.2
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.|||..|.+.||++|. +++|++.+ | +++|+|+|||||||||.+
T Consensus 37 ~M~l~~L~i~nf~~~~--------------~~~l~f~~----------------------g-~n~i~G~NGaGKS~lleA 79 (517)
T 4ad8_A 37 GPRLSRLEIRNLATIT--------------QLELELGG----------------------G-FCAFTGETGAGKSIIVDA 79 (517)
T ss_dssp -CCCCEEEEESBTTBS--------------CEEEECCC----------------------S-EEEEEESHHHHHHHHTHH
T ss_pred cceeeeeeccccccee--------------eEEEecCC----------------------C-eEEEEcCCCCCHHHHHHH
Confidence 4678999999999776 34455555 5 999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEe-ccccCCCCccccccCCce
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHF-AQIIDKPNEEYEIIPGTD 232 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~-~~~~~~~~~~~~~~~~~~ 232 (388)
|. .+.| |++ +.. ++.+ +...+.|...| .. + . ...
T Consensus 80 l~----~llg----~r~---~~~-----------------~i~~------g~~~a~v~~~f~~~--~--~-------~~~ 114 (517)
T 4ad8_A 80 LG----LLLG----GRA---NHD-----------------LIRS------GEKELLVTGFWGDG--D--E-------SEA 114 (517)
T ss_dssp HH----HHTC----SCC---CGG-----------------GBCT------TCSEEEEEEEC-------------------
T ss_pred HH----HHhc----CCc---HHH-----------------HhcC------CCCcEEEEEEEEec--C--C-------CCe
Confidence 99 5543 221 000 0101 12234455444 21 0 0 113
Q ss_pred EEEEEEeeeCCCCeeeeCCccccHHHHHHHHHH
Q psy14062 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRD 265 (388)
Q Consensus 233 l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~ 265 (388)
+.+.|.....+++.+.++|..+++..+..++..
T Consensus 115 ~~i~r~~~~~g~~~~~ing~~v~~~~l~~~~~~ 147 (517)
T 4ad8_A 115 DSASRRLSSAGRGAARLSGEVVSVRELQEWAQG 147 (517)
T ss_dssp CEEEEEEETTSCCEEESSSSBCCHHHHHHHHTT
T ss_pred EEEEEEEecCCCcEEEECCEECCHHHHHHHhhh
Confidence 445555555667889999999998888777654
No 97
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.11 E-value=3e-12 Score=116.30 Aligned_cols=136 Identities=10% Similarity=0.029 Sum_probs=73.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhh--hhccceeEecccCCCCCcceEEEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKI--RANKLSVLMHKSDQVGGVSRCSVA 211 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~l--r~~~i~~l~q~~~~~~~~~~~eV~ 211 (388)
|++++|+||||||||||+++|+ +.. .+.+|++.+.+... ....+ +...+++.++..... . ..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~----~~~-~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~---~~ 86 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFI----AKG-LRDGDPCIYVTTEE-----SRDSIIRQAKQFNWDFEEYIEK---K---LI 86 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH----HHH-HHHTCCEEEEESSS-----CHHHHHHHHHHTTCCCGGGBTT---T---EE
T ss_pred CCEEEEEcCCCCCHHHHHHHHH----HHH-HHCCCeEEEEEccc-----CHHHHHHHHHHhcchHHHHhhC---C---EE
Confidence 9999999999999999999999 544 33356665544221 11111 112244433322110 0 00
Q ss_pred EEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCc--eEEeccchhhH----
Q psy14062 212 IHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNR--FLILQEPIAKM---- 285 (388)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~--~LLlDEP~s~L---- 285 (388)
+ +... .. .. . ..+. ....|.++.+....+.+... +|+ ++|+|||++.+
T Consensus 87 ~-~~~~----~~--------~~---~-~~~~---~~~~~~~~~~~~~~~~~~~~------~~~~~llilDe~~~~~~~d~ 140 (235)
T 2w0m_A 87 I-IDAL----MK--------EK---E-DQWS---LVNLTPEELVNKVIEAKQKL------GYGKARLVIDSVSALFLDKP 140 (235)
T ss_dssp E-EECC----C----------------CTTB---CSSCCHHHHHHHHHHHHHHH------CSSCEEEEEETGGGGSSSCG
T ss_pred E-Eecc----cc--------cc---C-ceee---ecCCCHHHHHHHHHHHHHhh------CCCceEEEEECchHhhcCCH
Confidence 0 0000 00 00 0 0000 01125556555555555556 789 99999999776
Q ss_pred ---HHHHhhhHHHHHHhhhHHHHHHHhHH
Q psy14062 286 ---EVLYGKYDEERTEKLTRVQLVETDLK 311 (388)
Q Consensus 286 ---e~i~~~l~el~~e~~~~ii~vtH~l~ 311 (388)
.++...++++.++...++++++|+..
T Consensus 141 ~~~~~~~~~l~~~~~~~~~~vi~~~h~~~ 169 (235)
T 2w0m_A 141 AMARKISYYLKRVLNKWNFTIYATSQYAI 169 (235)
T ss_dssp GGHHHHHHHHHHHHHHTTEEEEEEEC---
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 56666777776553445899999883
No 98
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.10 E-value=1.2e-13 Score=124.64 Aligned_cols=59 Identities=8% Similarity=0.079 Sum_probs=39.6
Q ss_pred CeeeeCCccc----cHHHHHHHHHHcCCCCCCCceEEeccchhh-------H-----HHHHhhhHHHHH-HhhhHHHHHH
Q psy14062 245 SYYTLNGKKV----HFKEVAKVLRDHGVDLLNNRFLILQEPIAK-------M-----EVLYGKYDEERT-EKLTRVQLVE 307 (388)
Q Consensus 245 ~~~~LSgGq~----qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~-------L-----e~i~~~l~el~~-e~~~~ii~vt 307 (388)
+.+.+|+|++ |++.+++++.. ++.++++|||+++ | ..+...+.+... .+. ++..++
T Consensus 86 ~~~~~s~g~~~~~~~~~~~~~~li~------~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~-t~~~~~ 158 (211)
T 3asz_A 86 PVYDFRAYTRSPRRTPVRPAPVVIL------EGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGR-SLEGVV 158 (211)
T ss_dssp CCEETTTTEECSSCEEECCCSEEEE------ESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCC-CHHHHH
T ss_pred CcccCcccCCCCCeEEeCCCcEEEE------eehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCC-CHHHHH
Confidence 4677888864 45556666666 7888888999998 4 445556655433 344 488888
Q ss_pred HhH
Q psy14062 308 TDL 310 (388)
Q Consensus 308 H~l 310 (388)
|++
T Consensus 159 ~~~ 161 (211)
T 3asz_A 159 AQY 161 (211)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 99
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.09 E-value=7.9e-13 Score=120.24 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|++++|+||||||||||+++|+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999999
No 100
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.09 E-value=2.8e-12 Score=122.07 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=39.5
Q ss_pred CcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCC-cceee
Q psy14062 99 TGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSG-KSNVI 173 (388)
Q Consensus 99 ~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSG-Ks~i~ 173 (388)
..+|+++++.+++ |++++|+||||||||||+++|+ +.+ ++.+| ++.+.
T Consensus 22 ~~~Ld~i~~~l~~----------------------G~~~~i~G~~G~GKTTl~~~ia----~~~-~~~~G~~v~~~ 70 (296)
T 1cr0_A 22 CTGINDKTLGARG----------------------GEVIMVTSGSGMGKSTFVRQQA----LQW-GTAMGKKVGLA 70 (296)
T ss_dssp CTTHHHHHCSBCT----------------------TCEEEEEESTTSSHHHHHHHHH----HHH-HHTSCCCEEEE
T ss_pred HHHHHHHhcCCCC----------------------CeEEEEEeCCCCCHHHHHHHHH----HHH-HHHcCCeEEEE
Confidence 3467799999999 9999999999999999999999 776 44456 55443
No 101
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.07 E-value=2e-11 Score=106.07 Aligned_cols=78 Identities=15% Similarity=0.139 Sum_probs=56.8
Q ss_pred EEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC
Q psy14062 86 KSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN 165 (388)
Q Consensus 86 ksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn 165 (388)
++|++..++ ++|||+|.+ |++++|+||||||||||+++|+ |++ |
T Consensus 15 ~~~g~~~~l--------~~vsl~i~~----------------------Ge~v~L~G~nGaGKTTLlr~l~----g~l-~- 58 (158)
T 1htw_A 15 LRFGKKFAE--------ILLKLHTEK----------------------AIMVYLNGDLGAGKTTLTRGML----QGI-G- 58 (158)
T ss_dssp HHHHHHHHH--------HHHHHCCSS----------------------CEEEEEECSTTSSHHHHHHHHH----HHT-T-
T ss_pred HHHHHHHHH--------hccccccCC----------------------CCEEEEECCCCCCHHHHHHHHH----HhC-C-
Confidence 567766554 499999999 9999999999999999999999 888 5
Q ss_pred CCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceE
Q psy14062 166 GSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRC 208 (388)
Q Consensus 166 gSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~ 208 (388)
.+|.+.+.+..+. ..... . .+++|+..++ .+++.
T Consensus 59 ~~G~V~~~g~~i~----~~~~~--~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 59 HQGNVKSPTYTLV----EEYNI--A--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp CCSCCCCCTTTCE----EEEEE--T--TEEEEEEECT-TCSCT
T ss_pred CCCeEEECCEeee----eeccC--C--Ccceeccccc-cCCcH
Confidence 5899777654332 00111 1 2678877666 55543
No 102
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.06 E-value=6.2e-13 Score=139.23 Aligned_cols=68 Identities=22% Similarity=0.202 Sum_probs=39.8
Q ss_pred EEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcce
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSR 207 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~ 207 (388)
.++|||||||||||||++|+ |+.-|.++|.+.+.+..+...........+..++++||++..++..++
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~----Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv 114 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALS----GVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEV 114 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHH----SCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHH
T ss_pred eEEEECCCCChHHHHHHHHh----CCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHH
Confidence 48999999999999999999 987454899988777654322111111123568999998776655443
No 103
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.06 E-value=5.7e-12 Score=135.35 Aligned_cols=48 Identities=4% Similarity=-0.066 Sum_probs=33.6
Q ss_pred CCceEEeccchhhH-----HH-HHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHH
Q psy14062 272 NNRFLILQEPIAKM-----EV-LYGKYDEERTEKLTRVQLVETDLKALEPELRKA 320 (388)
Q Consensus 272 ~p~~LLlDEP~s~L-----e~-i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~ 320 (388)
+|.++|||||++++ .. +...+..+.++...+++++||+.+.+ ..+++.
T Consensus 686 ~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~ 739 (800)
T 1wb9_A 686 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKM 739 (800)
T ss_dssp TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHS
T ss_pred CCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhh
Confidence 79999999997666 23 35567676664233599999998654 466654
No 104
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.04 E-value=1.8e-12 Score=124.25 Aligned_cols=145 Identities=10% Similarity=0.030 Sum_probs=64.4
Q ss_pred EEEEcCCCCChhhHHhhhhhcccEE-EcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEEEec
Q psy14062 137 NAIIGPNGSGKSNVIDSMLFRFNAI-IGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFA 215 (388)
Q Consensus 137 ~~iiGpnGsGKSTLl~~i~~~~ngI-iGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~~~~ 215 (388)
++||||||||||||+++|. |. + .+.+| +.+.+..+. .......++++++.......++..+..-...
T Consensus 21 I~lvG~nG~GKSTLl~~L~----g~~~-~~~~g-i~~~g~~~~------~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~ 88 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLF----LTDL-YPERV-ISGAAEKIE------RTVQIEASTVEIEERGVKLRLTVVDTPGYGD 88 (301)
T ss_dssp EEEEEETTSSHHHHHHHHH----C--------------------------------CEEEEC---CCEEEEEEEEC----
T ss_pred EEEECCCCCCHHHHHHHHh----CCCc-cCCCC-cccCCcccC------CcceEeeEEEEecCCCcccCcchhhhhhhhh
Confidence 4999999999999999998 76 5 55577 544433221 0111234778887655443344333221110
Q ss_pred cccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhh-HHHH-HhhhH
Q psy14062 216 QIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAK-MEVL-YGKYD 293 (388)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~-Le~i-~~~l~ 293 (388)
.. .. ...+.. ... .+....+.....+|||++|++.+++++ .++++|||++. |..+ ...++
T Consensus 89 ~~-~~-~e~~~~----l~~--~l~~~~~~~~~~~sgg~rqrv~~ara~----------~ll~ldePt~~~Ld~~~~~~l~ 150 (301)
T 2qnr_A 89 AI-NC-RDCFKT----IIS--YIDEQFERYLHDESGLNRRHIIDNRVH----------CCFYFISPFGHGLKPLDVAFMK 150 (301)
T ss_dssp ---------CTT----HHH--HHHHHHHHHHHHHTSSCCTTCCCCCCC----------EEEEEECSSSSSCCHHHHHHHH
T ss_pred hc-Cc-HHHHHH----HHH--HHHHHHHHHHHHhCHHhhhhhhhhhhh----------heeeeecCcccCCCHHHHHHHH
Confidence 00 00 000000 000 000111245667899999986555433 27899999874 7211 24454
Q ss_pred HHHHHhhhHHHHHHHhHH
Q psy14062 294 EERTEKLTRVQLVETDLK 311 (388)
Q Consensus 294 el~~e~~~~ii~vtH~l~ 311 (388)
++.......+++.+||+.
T Consensus 151 ~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 151 AIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHTTTSCEEEEECCGGGS
T ss_pred HHHhcCCEEEEEEeCCCC
Confidence 444321223666788863
No 105
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.01 E-value=2.4e-11 Score=125.13 Aligned_cols=61 Identities=5% Similarity=-0.051 Sum_probs=49.3
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH----------HHHHhhhHHHHHHhhhHHHHHHHhH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM----------EVLYGKYDEERTEKLTRVQLVETDL 310 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L----------e~i~~~l~el~~e~~~~ii~vtH~l 310 (388)
.+.++..||+|++|++.+++++.. +|+++|+| |+++| +.+..+++.+++.+. ++++++|+.
T Consensus 347 ~~~~p~~LS~g~~q~~~~a~~l~~------~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~-tvilvsh~~ 417 (525)
T 1tf7_A 347 VCAYPESAGLEDHLQIIKSEINDF------KPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEI-TGLFTNTSD 417 (525)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHTT------CCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTC-EEEEEEECS
T ss_pred EEeccccCCHHHHHHHHHHHHHhh------CCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCC-EEEEEECcc
Confidence 345678899999999999999998 99999999 99998 234456666665555 488899987
No 106
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.97 E-value=2.9e-10 Score=113.54 Aligned_cols=85 Identities=11% Similarity=0.101 Sum_probs=50.9
Q ss_pred EEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcE--EEEEcCCCCChhhHHhhhhhc
Q psy14062 80 IVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRF--NAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 80 l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~iiGpnGsGKSTLl~~i~~~ 157 (388)
++..+.++|++.. +. +|||++.+ |++ ++|+||||||||||+++|+
T Consensus 17 l~~~~~~~y~~~~-L~--------~vsl~i~~----------------------Gei~~vaLvG~nGaGKSTLln~L~-- 63 (427)
T 2qag_B 17 VPLAGHVGFDSLP-DQ--------LVNKSVSQ----------------------GFCFNILCVGETGLGKSTLMDTLF-- 63 (427)
T ss_dssp CCCCCCC-CC--C-HH--------HHHHSCC-----------------------CCEEEEEEECSTTSSSHHHHHHHH--
T ss_pred EEEeeEEEECCee-cC--------CCceEecC----------------------CCeeEEEEECCCCCCHHHHHHHHh--
Confidence 3344446787654 54 99999999 999 9999999999999999999
Q ss_pred ccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEE
Q psy14062 158 FNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVA 211 (388)
Q Consensus 158 ~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~ 211 (388)
|+. - .|.. +. ..... .....+++++|.+..++.+++.+..
T Consensus 64 --G~~-l--~g~~------~~--~~~~~-~~~~~i~~v~Q~~~l~~~ltv~D~~ 103 (427)
T 2qag_B 64 --NTK-F--EGEP------AT--HTQPG-VQLQSNTYDLQESNVRLKLTIVSTV 103 (427)
T ss_dssp --TSC-C-----------------CCSS-CEEEEEEEEEEC--CEEEEEEEEEE
T ss_pred --Ccc-c--cCCc------CC--CCCcc-ceEeeEEEEeecCccccccchhhhh
Confidence 542 1 1221 11 00011 1123589999987766556655543
No 107
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.94 E-value=6e-12 Score=123.68 Aligned_cols=34 Identities=32% Similarity=0.503 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCC----Cccee
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGS----GKSNV 172 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngS----GKs~i 172 (388)
++.++|+||||||||||+++|+ |++ ++.+ |++.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~----gl~-~~~~~~e~G~i~i 207 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLA----AVF-NTTSAWEYGREFV 207 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHH----HHT-TCEEECCTTHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHH----HHh-CCCcchhhHHHHH
Confidence 8999999999999999999999 887 4456 76544
No 108
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.91 E-value=8.6e-11 Score=115.90 Aligned_cols=122 Identities=17% Similarity=0.169 Sum_probs=75.3
Q ss_pred CCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEE
Q psy14062 133 YKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAI 212 (388)
Q Consensus 133 ~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~ 212 (388)
-|++++|+||||||||||+++|+ +++-|.++|++.+++..+. ......+++++|..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~----~~~~~~~~g~I~~~e~~~e-------~~~~~~~~~v~Q~~------------- 190 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMI----DYINQTKSYHIITIEDPIE-------YVFKHKKSIVNQRE------------- 190 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHH----HHHHHHSCCEEEEEESSCC-------SCCCCSSSEEEEEE-------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHH----hhcCcCCCcEEEEecccHh-------hhhccCceEEEeee-------------
Confidence 38899999999999999999999 7773434788755442210 00112234443310
Q ss_pred EeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhHHHHHhhh
Q psy14062 213 HFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKMEVLYGKY 292 (388)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~Le~i~~~l 292 (388)
+ + ..+..+ +..|+++|.. +|+++++|||+.. +.+...+
T Consensus 191 -~----g------------------------~~~~~~------~~~l~~~L~~------~pd~illdE~~d~-e~~~~~l 228 (372)
T 2ewv_A 191 -V----G------------------------EDTKSF------ADALRAALRE------DPDVIFVGEMRDL-ETVETAL 228 (372)
T ss_dssp -B----T------------------------TTBSCS------HHHHHHHTTS------CCSEEEESCCCSH-HHHHHHH
T ss_pred -c----C------------------------CCHHHH------HHHHHHHhhh------CcCEEEECCCCCH-HHHHHHH
Confidence 0 0 001112 4588888888 8999999999843 3333334
Q ss_pred HHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH
Q psy14062 293 DEERTEKLTRVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 293 ~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+.. ..+.. ++.++|+.+ +...++++...
T Consensus 229 ~~~-~~g~~-vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 229 RAA-ETGHL-VFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp HHH-TTTCE-EEECCCCCS-HHHHHHHHHHT
T ss_pred HHH-hcCCE-EEEEECcch-HHHHHHHHHHh
Confidence 332 33443 677788854 77777877544
No 109
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.91 E-value=1e-10 Score=114.88 Aligned_cols=133 Identities=13% Similarity=0.096 Sum_probs=77.4
Q ss_pred HHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEe-cccCCCCC
Q psy14062 126 EIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLM-HKSDQVGG 204 (388)
Q Consensus 126 ~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~-q~~~~~~~ 204 (388)
.+++...-|++++|+||||||||||+++|+ +++ ++.+|.+.+.|..-+ .....+ ..+++++ |.+.
T Consensus 167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~l~----~~~-~~~~g~I~ie~~~e~----~~~~~~-~~v~~v~~q~~~---- 232 (361)
T 2gza_A 167 FLRRAVQLERVIVVAGETGSGKTTLMKALM----QEI-PFDQRLITIEDVPEL----FLPDHP-NHVHLFYPSEAK---- 232 (361)
T ss_dssp HHHHHHHTTCCEEEEESSSSCHHHHHHHHH----TTS-CTTSCEEEEESSSCC----CCTTCS-SEEEEECC--------
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHH----hcC-CCCceEEEECCcccc----CccccC-CEEEEeecCccc----
Confidence 333333339999999999999999999999 888 667898777653100 000001 1122222 1100
Q ss_pred cceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhh
Q psy14062 205 VSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAK 284 (388)
Q Consensus 205 ~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~ 284 (388)
..++++...+..|+.++.. .|+.++++|+...
T Consensus 233 ------------------------------------------~~~~~~~t~~~~i~~~l~~------~pd~~l~~e~r~~ 264 (361)
T 2gza_A 233 ------------------------------------------EEENAPVTAATLLRSCLRM------KPTRILLAELRGG 264 (361)
T ss_dssp ------------------------------------------------CCHHHHHHHHTTS------CCSEEEESCCCST
T ss_pred ------------------------------------------cccccccCHHHHHHHHHhc------CCCEEEEcCchHH
Confidence 0012344567778877777 8999999999864
Q ss_pred HHHHHhhhHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHHH
Q psy14062 285 MEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFL 324 (388)
Q Consensus 285 Le~i~~~l~el~~e~~~~ii~vtH~l~~l~~~~d~~~~y~ 324 (388)
++...+..+.. +..+++...|... +...++|+....
T Consensus 265 --~~~~~l~~l~~-g~~~~l~t~H~~~-~~~~~~Rl~~l~ 300 (361)
T 2gza_A 265 --EAYDFINVAAS-GHGGSITSCHAGS-CELTFERLALMV 300 (361)
T ss_dssp --HHHHHHHHHHT-TCCSCEEEEECSS-HHHHHHHHHHHH
T ss_pred --HHHHHHHHHhc-CCCeEEEEECCCC-HHHHHHHHHHHH
Confidence 34455554433 2223455567643 666667665553
No 110
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.90 E-value=4.3e-11 Score=107.17 Aligned_cols=47 Identities=13% Similarity=-0.053 Sum_probs=34.6
Q ss_pred eeeeCCccccH-HHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHH
Q psy14062 246 YYTLNGKKVHF-KEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTE 298 (388)
Q Consensus 246 ~~~LSgGq~qr-~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e 298 (388)
...+|+|++|+ +..+++++. ++..+++|||+|++ +++...+.++..+
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~------~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVL------AFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHG------GGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred ccCCCchhHHHHHHHHHHHHH------hcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 34578999888 678888877 67778899999988 6666666554433
No 111
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.90 E-value=2.1e-11 Score=119.26 Aligned_cols=108 Identities=12% Similarity=0.226 Sum_probs=61.1
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEc-CCCC----CcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIG-PNGS----GKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRC 208 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiG-pngS----GKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~ 208 (388)
|++++|+||||||||||++.++ +.+- ++.+ |++ +|+.+... .+..++++++|....++. +..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~----~~~~~~~~~Gg~~G~v------i~i~~e~~--~~~~~i~~i~q~~~~~~~-~v~ 197 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLA----VMVQLPPEEGGLNGSV------IWIDTENT--FRPERIREIAQNRGLDPD-EVL 197 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHH----HHTTSCGGGTSCSCEE------EEEESSSC--CCHHHHHHHHHTTTCCHH-HHG
T ss_pred CeEEEEECCCCCCHHHHHHHHH----HHhccchhcCCCCCeE------EEEeCCCC--CCHHHHHHHHHHcCCCHH-HHh
Confidence 9999999999999999999999 6541 2223 452 22223222 122346666665433211 110
Q ss_pred EEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHc-CCCCCCCceEEeccchhhH
Q psy14062 209 SVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDH-GVDLLNNRFLILQEPIAKM 285 (388)
Q Consensus 209 eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~-Gi~~~~p~~LLlDEP~s~L 285 (388)
+ .+.+.+. + -+.++.+++.+++.+... --+..+|+++|+|||++.+
T Consensus 198 ~----------------------ni~~~~~--------~-~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~l 244 (349)
T 1pzn_A 198 K----------------------HIYVARA--------F-NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 244 (349)
T ss_dssp G----------------------GEEEEEC--------C-SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTH
T ss_pred h----------------------CEEEEec--------C-ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhh
Confidence 0 0111110 0 034566777777766631 0001279999999999987
No 112
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.85 E-value=5.6e-11 Score=116.27 Aligned_cols=112 Identities=13% Similarity=0.118 Sum_probs=60.7
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcC-CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGP-NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAI 212 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGp-ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~ 212 (388)
|++++|+||||||||||+++|+ |.. + +.+|.+.+.. |......+...+++++|++.+++..+..++.+
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~----g~~-~~~~~G~I~~~~------G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~l 283 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALL----GLQ-NEILTNDVSNVS------GLGQHTTTAARLYHFPHGGDVIDSPGVREFGL 283 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHH----CCS-SCCCCC-------------------CCCEEEECTTSCEEEECHHHHTCCC
T ss_pred CCEEEEECCCCccHHHHHHHHh----ccc-cccccCCccccC------CCCccceEEEEEEEECCCCEecCcccHHHhhh
Confidence 8999999999999999999999 887 5 6688865541 21111123345788887654443333322110
Q ss_pred EeccccCCCCcc-ccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHH
Q psy14062 213 HFAQIIDKPNEE-YEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVL 263 (388)
Q Consensus 213 ~~~~~~~~~~~~-~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL 263 (388)
.+..... ...+. ..+...+.....+.....+| |+++|++||+++
T Consensus 284 -----~~l~~~e~~~~~~-e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 284 -----WHLEPEQITQGFV-EFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp -----CCCCHHHHHHTSG-GGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred -----cCCCHHHHHHHHH-HHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 1111110 00011 11111122334567788899 999999999754
No 113
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.83 E-value=1.4e-09 Score=93.37 Aligned_cols=45 Identities=38% Similarity=0.682 Sum_probs=38.0
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
|++..|++.||++|.+.. + +|+ ..+++|+|||||||||++.+|
T Consensus 1 M~i~~l~i~nf~~~~~~~-i-~f~-----------------------------------~g~~~I~G~NGsGKStil~Ai 43 (149)
T 1f2t_A 1 MKLERVTVKNFRSHSDTV-V-EFK-----------------------------------EGINLIIGQNGSGKSSLLDAI 43 (149)
T ss_dssp CEEEEEEEESBTTBSSEE-E-ECC-----------------------------------SEEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEEEeCcccCcceE-E-EcC-----------------------------------CCeEEEECCCCCCHHHHHHHH
Confidence 578899999999998643 3 343 569999999999999999999
Q ss_pred hh
Q psy14062 155 LF 156 (388)
Q Consensus 155 ~~ 156 (388)
.+
T Consensus 44 ~~ 45 (149)
T 1f2t_A 44 LV 45 (149)
T ss_dssp HH
T ss_pred HH
Confidence 95
No 114
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.81 E-value=6.7e-11 Score=111.66 Aligned_cols=64 Identities=9% Similarity=0.039 Sum_probs=42.4
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchh--hH--------HHHHhhhHHHHHHhhhHHHHHHHhHH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIA--KM--------EVLYGKYDEERTEKLTRVQLVETDLK 311 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s--~L--------e~i~~~l~el~~e~~~~ii~vtH~l~ 311 (388)
.+.+++.||+|+.++ ++++.. +|+++|+|||++ ++ .++...|..+.++...++++++|+.+
T Consensus 112 ~~~~~~~ls~g~~~~---i~~l~~------~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 112 IGSLPNIMAPEWFDG---LKRAAE------GRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp TTSCCCTTSHHHHHH---HHHHHT------TCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred CCCCcccCCHHHHHH---HHHhcC------CCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 456778889998554 356666 799999999999 44 44556666665443445899999886
Q ss_pred HHH
Q psy14062 312 ALE 314 (388)
Q Consensus 312 ~l~ 314 (388)
...
T Consensus 183 ~~~ 185 (279)
T 1nlf_A 183 GAA 185 (279)
T ss_dssp ---
T ss_pred ccc
Confidence 654
No 115
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.80 E-value=2e-11 Score=118.35 Aligned_cols=146 Identities=14% Similarity=0.076 Sum_probs=79.7
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccc-hhhhhc--cceeEecccCCCCCcceEEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRA-SKIRAN--KLSVLMHKSDQVGGVSRCSV 210 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~-~~lr~~--~i~~l~q~~~~~~~~~~~eV 210 (388)
|++++|+|||||||||++++|+ +++ ++.+|++.+.+.+++-.+... ...+++ .+.+++|.....|..++.+.
T Consensus 129 g~vi~lvG~nGaGKTTll~~La----g~l-~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLA----NWL-KNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH----HHH-HHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH----HHH-HhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 8999999999999999999999 888 556899999888765333210 011123 34577777655544433221
Q ss_pred EEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhHHHHHh
Q psy14062 211 AIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKMEVLYG 290 (388)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~Le~i~~ 290 (388)
.... .. . .... .+.......+... .-..+...+++++.. ++.++++|.++.. ++..
T Consensus 204 l~~~-~~-----~-----~~d~-vliDtaG~~~~~~----~l~~eL~~i~ral~~------de~llvLDa~t~~--~~~~ 259 (328)
T 3e70_C 204 IQHA-KA-----R-----GIDV-VLIDTAGRSETNR----NLMDEMKKIARVTKP------NLVIFVGDALAGN--AIVE 259 (328)
T ss_dssp HHHH-HH-----H-----TCSE-EEEEECCSCCTTT----CHHHHHHHHHHHHCC------SEEEEEEEGGGTT--HHHH
T ss_pred HHHH-Hh-----c-----cchh-hHHhhccchhHHH----HHHHHHHHHHHHhcC------CCCEEEEecHHHH--HHHH
Confidence 1100 00 0 0011 1112211111000 112233346777765 6788999976653 4555
Q ss_pred hhHHHHHHhhhHHHHHHH
Q psy14062 291 KYDEERTEKLTRVQLVET 308 (388)
Q Consensus 291 ~l~el~~e~~~~ii~vtH 308 (388)
.++.+.+....+++++||
T Consensus 260 ~~~~~~~~~~it~iilTK 277 (328)
T 3e70_C 260 QARQFNEAVKIDGIILTK 277 (328)
T ss_dssp HHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHhcCCCEEEEeC
Confidence 555555432223556666
No 116
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.79 E-value=2e-10 Score=105.59 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhh
Q psy14062 135 RFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSML 177 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i 177 (388)
++++|+|||||||||||++|+ +++ ++.+|.+.+.+..+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~----g~~-~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFV----TAL-IPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHH----HHH-SCCTTTC-------
T ss_pred cEEEEECCCCCCHHHHHHHHh----ccc-ccCCCeEEECCEEc
Confidence 588999999999999999999 888 56689988877654
No 117
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.79 E-value=8e-10 Score=111.93 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=47.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCc--cchhh-hhccceeEecccCCCC
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGY--RASKI-RANKLSVLMHKSDQVG 203 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~--~~~~l-r~~~i~~l~q~~~~~~ 203 (388)
|++++|+||||||||||+++|+ +++ ++.+|++.+.+.+.+-.+. +.... ++.++++++|....++
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LA----gll-~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLA----RQF-EQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHH----HHH-HHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CeEEEEECCCcccHHHHHHHHH----HHh-hhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 9999999999999999999999 888 4558999888766542110 01111 3456999999865543
No 118
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.75 E-value=3.1e-07 Score=90.18 Aligned_cols=46 Identities=41% Similarity=0.680 Sum_probs=38.8
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
+|.+..|++.||++|.. ..+ .|+ ..+++|+|||||||||+|.+
T Consensus 2 ~M~l~~L~l~nFr~~~~-~~i-~f~-----------------------------------~gl~vi~G~NGaGKT~ileA 44 (371)
T 3auy_A 2 SMILKEIRMNNFKSHVN-SRI-KFE-----------------------------------KGIVAIIGENGSGKSSIFEA 44 (371)
T ss_dssp CEEEEEEEEEEETTEEE-EEE-ECC-----------------------------------SEEEEEEECTTSSHHHHHHH
T ss_pred CcEEeEEEEEccccccc-eEE-ecC-----------------------------------CCeEEEECCCCCCHHHHHHH
Confidence 47799999999999964 333 344 67999999999999999999
Q ss_pred hhh
Q psy14062 154 MLF 156 (388)
Q Consensus 154 i~~ 156 (388)
|++
T Consensus 45 I~~ 47 (371)
T 3auy_A 45 VFF 47 (371)
T ss_dssp HHH
T ss_pred HHH
Confidence 996
No 119
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.74 E-value=2.4e-09 Score=108.59 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=43.0
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhh
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLF 178 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~ 178 (388)
|++|||+|++ ++++|+|||||||||||++|+ |++ ++.+|++.+.|..+.
T Consensus 20 l~~vsl~i~~-----------------------e~~~liG~nGsGKSTLl~~l~----Gl~-~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 20 FFARTFDFDE-----------------------LVTTLSGGNGAGKSTTMAGFV----TAL-IPDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEEEECCS-----------------------SEEEEECCTTSSHHHHHHHHH----HHH-CCCTTTCCCCCTTSC
T ss_pred ccceEEEEcc-----------------------ceEEEECCCCCcHHHHHHHHh----cCC-CCCCCEEEECCEEcc
Confidence 4499999887 699999999999999999999 998 777999988877654
No 120
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.72 E-value=1.5e-09 Score=105.60 Aligned_cols=81 Identities=15% Similarity=0.085 Sum_probs=58.5
Q ss_pred EEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCC
Q psy14062 86 KSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN 165 (388)
Q Consensus 86 ksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn 165 (388)
++|++..++ +++||++.+ |++++|+||||||||||+++|+ +++ ++
T Consensus 37 ~~~~~~~~l--------~~i~~~~~~----------------------g~~v~i~G~~GaGKSTLl~~l~----g~~-~~ 81 (337)
T 2qm8_A 37 HRAAVRDLI--------DAVLPQTGR----------------------AIRVGITGVPGVGKSTTIDALG----SLL-TA 81 (337)
T ss_dssp HHHHHHHHH--------HHHGGGCCC----------------------SEEEEEECCTTSCHHHHHHHHH----HHH-HH
T ss_pred cccChHHHH--------HhCCcccCC----------------------CeEEEEECCCCCCHHHHHHHHH----Hhh-hh
Confidence 456655554 499999999 9999999999999999999999 887 55
Q ss_pred CCCcceeehhhhhhcCc--cchhhhhccceeEecccCCC
Q psy14062 166 GSGKSNVIDSMLFVFGY--RASKIRANKLSVLMHKSDQV 202 (388)
Q Consensus 166 gSGKs~i~da~i~vlg~--~~~~lr~~~i~~l~q~~~~~ 202 (388)
.+|++.+.+........ ..... +.++++++|++..+
T Consensus 82 ~~g~v~i~~~d~~~~~~~~~~~~~-~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 82 AGHKVAVLAVDPSSTRTGGSILGD-KTRMARLAIDRNAF 119 (337)
T ss_dssp TTCCEEEEEECGGGGSSCCCSSCC-GGGSTTGGGCTTEE
T ss_pred CCCEEEEEEEcCcccccccchHHH-hhhheeeccCcccc
Confidence 68998887765532211 00112 24588888876654
No 121
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.71 E-value=1.1e-09 Score=100.15 Aligned_cols=129 Identities=14% Similarity=0.139 Sum_probs=72.8
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcC-CCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcceEEEEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGP-NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAI 212 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGp-ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~~~eV~~ 212 (388)
|++++|+||||||||||+++|+ |+..| +.+|.+.+.+ ..........++|+||.+..++.++..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~----g~~~p~~~~g~v~~tt-------r~~~~~e~~gi~y~fq~~~~f~~~~~~---- 80 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALL----KTQPLYDTQVSVSHTT-------RQPRPGEVHGEHYFFVNHDEFKEMISR---- 80 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH----HHSCTTTEEECCCEEC-------SCCCTTCCBTTTBEECCHHHHHHHHHT----
T ss_pred CcEEEEECCCCCCHHHHHHHHh----ccCCCCceEEEEEecC-------CCCCcccccCceEEECCHHHHHHHHhc----
Confidence 9999999999999999999999 87722 2466654433 222211234588999876544333220
Q ss_pred EeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhHHHHHhhh
Q psy14062 213 HFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKMEVLYGKY 292 (388)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~Le~i~~~l 292 (388)
...++... ..+ ..|..+ +..+..+|.. ++++|||=-..+...+...+
T Consensus 81 -----------------~~f~E~~~---~~~-~~yg~~-----~~~v~~~l~~-------G~illLDLD~~~~~~i~~~l 127 (219)
T 1s96_A 81 -----------------DAFLEHAE---VFG-NYYGTS-----REAIEQVLAT-------GVDVFLDIDWQGAQQIRQKM 127 (219)
T ss_dssp -----------------TCEEEEEE---ETT-EEEEEE-----HHHHHHHHTT-------TCEEEEECCHHHHHHHHHHC
T ss_pred -----------------CHHHHHHH---HHh-ccCCCC-----HHHHHHHHhc-------CCeEEEEECHHHHHHHHHHc
Confidence 00000000 000 112211 2334445543 68999992222224455444
Q ss_pred HHHHHHhhhHHHHHHHhHHHHHH
Q psy14062 293 DEERTEKLTRVQLVETDLKALEP 315 (388)
Q Consensus 293 ~el~~e~~~~ii~vtH~l~~l~~ 315 (388)
. ++. +|++++|+++.+++
T Consensus 128 ~----~~~-tI~i~th~~~~l~~ 145 (219)
T 1s96_A 128 P----HAR-SIFILPPSKIELDR 145 (219)
T ss_dssp T----TCE-EEEEECSSHHHHHH
T ss_pred c----CCE-EEEEECCCHHHHHH
Confidence 3 333 48899999988776
No 122
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.70 E-value=1.5e-10 Score=99.39 Aligned_cols=69 Identities=22% Similarity=0.184 Sum_probs=53.9
Q ss_pred CCCeeeeCCccccHHHHH------HHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHH
Q psy14062 243 NSSYYTLNGKKVHFKEVA------KVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLK 311 (388)
Q Consensus 243 ~~~~~~LSgGq~qr~~Ia------~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~ 311 (388)
++++..|||||+||+.+| ++|.. +|+++||||||++| ..+...+.++..++. +++++||++
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-tiiivsH~~- 123 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAG------EISLLILDEPTPYLDEERRRKLITIMERYLKKIP-QVILVSHDE- 123 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHS------SCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSS-EEEEEESCG-
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcC------CCCEEEEECCCccCCHHHHHHHHHHHHHHHccCC-EEEEEEChH-
Confidence 456889999999999876 77877 89999999999999 556666766655544 499999998
Q ss_pred HHHHHHHH
Q psy14062 312 ALEPELRK 319 (388)
Q Consensus 312 ~l~~~~d~ 319 (388)
.+...+|+
T Consensus 124 ~~~~~~d~ 131 (148)
T 1f2t_B 124 ELKDAADH 131 (148)
T ss_dssp GGGGGCSE
T ss_pred HHHHhCCE
Confidence 45555543
No 123
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.69 E-value=2.2e-11 Score=117.60 Aligned_cols=157 Identities=14% Similarity=0.129 Sum_probs=85.1
Q ss_pred cEEEEEcCCCCChhhHHhhhhhccc----EEEcCCCCCcceeehhhhhhcCcc-------------chhhhhccceeE--
Q psy14062 135 RFNAIIGPNGSGKSNVIDSMLFRFN----AIIGPNGSGKSNVIDSMLFVFGYR-------------ASKIRANKLSVL-- 195 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~~~~n----gIiGpngSGKs~i~da~i~vlg~~-------------~~~lr~~~i~~l-- 195 (388)
++++|+|+|||||||||+.|..... +++ .|.+|.+.|++..+...+.. ...++ ..++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi-~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~-~~l~~l~~ 82 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVI-ENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELE-DALLDLLD 82 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEE-CSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHH-HHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEE-EecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHH-HHHHHHHh
Confidence 5899999999999999999994321 445 67899999988765432211 01122 346666
Q ss_pred -ecccCCCCCcceEEEEEEe--ccc---c-CCCC-ccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcC
Q psy14062 196 -MHKSDQVGGVSRCSVAIHF--AQI---I-DKPN-EEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHG 267 (388)
Q Consensus 196 -~q~~~~~~~~~~~eV~~~~--~~~---~-~~~~-~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~G 267 (388)
+|.+..++..+..+..... ..+ + .... .....+. ..+.+........ ....+|+|++|+...+.++..
T Consensus 83 ~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~-~~l~~vd~~~~~~-~~~~ls~g~~Q~~~ad~ill~-- 158 (318)
T 1nij_A 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLD-GVIALVDAVHADE-QMNQFTIAQSQVGYADRILLT-- 158 (318)
T ss_dssp HHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEE-EEEEEEETTTHHH-HHHHCHHHHHHHHTCSEEEEE--
T ss_pred HHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEEC-CEEEEEEHHHHHH-HHhhchHHHHHHHhCCEEEEE--
Confidence 5665544455555443211 000 0 0000 0000000 1222222211111 223679999999866555555
Q ss_pred CCCCCCceEEeccchhhHHHHHhhhHHHHHHhhhHHHHHHHh
Q psy14062 268 VDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETD 309 (388)
Q Consensus 268 i~~~~p~~LLlDEP~s~Le~i~~~l~el~~e~~~~ii~vtH~ 309 (388)
+++++ ||| +.+...++++. .+. +|++++|+
T Consensus 159 ----k~dl~--de~----~~l~~~l~~l~-~~~-~ii~~sh~ 188 (318)
T 1nij_A 159 ----KTDVA--GEA----EKLHERLARIN-ARA-PVYTVTHG 188 (318)
T ss_dssp ----CTTTC--SCT----HHHHHHHHHHC-SSS-CEEECCSS
T ss_pred ----CcccC--CHH----HHHHHHHHHhC-CCC-eEEEeccc
Confidence 66654 888 44566665553 233 47778885
No 124
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.66 E-value=1.8e-09 Score=105.45 Aligned_cols=177 Identities=11% Similarity=0.045 Sum_probs=97.4
Q ss_pred EEEEEEEeeceEEec-CceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 75 LIITKIVAFNFKSYA-GYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 75 l~i~~l~~~~fksy~-~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
+...+++ +.|+ +..+| +++ |.|.+ |++++|+||||||||||+++
T Consensus 46 i~~~~l~----~~~~tg~~al--------d~l-l~i~~----------------------Gq~~gIiG~nGaGKTTLl~~ 90 (347)
T 2obl_A 46 LLRQVID----QPFILGVRAI--------DGL-LTCGI----------------------GQRIGIFAGSGVGKSTLLGM 90 (347)
T ss_dssp TTCCCCC----SEECCSCHHH--------HHH-SCEET----------------------TCEEEEEECTTSSHHHHHHH
T ss_pred eeecccc----eecCCCCEEE--------Eee-eeecC----------------------CCEEEEECCCCCCHHHHHHH
Confidence 4445555 6786 55554 499 99999 99999999999999999999
Q ss_pred hhhcccEEEcCCCCCcceeehhhh----hhcCccchhhhhccceeEecccCCC-CCcceEEEEEEeccccCCCCcccccc
Q psy14062 154 MLFRFNAIIGPNGSGKSNVIDSML----FVFGYRASKIRANKLSVLMHKSDQV-GGVSRCSVAIHFAQIIDKPNEEYEII 228 (388)
Q Consensus 154 i~~~~ngIiGpngSGKs~i~da~i----~vlg~~~~~lr~~~i~~l~q~~~~~-~~~~~~eV~~~~~~~~~~~~~~~~~~ 228 (388)
|+ ++. .+++|.+.+.|... ...+........+.+.++++..... ...........+...+ ...
T Consensus 91 I~----g~~-~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~-------~~~ 158 (347)
T 2obl_A 91 IC----NGA-SADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYF-------RDQ 158 (347)
T ss_dssp HH----HHS-CCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHH-------HTT
T ss_pred Hh----cCC-CCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHH-------Hhc
Confidence 99 877 55678766655321 0011100000112234444321110 0000000000000000 000
Q ss_pred CCceEEEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHH-Hhhh-
Q psy14062 229 PGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERT-EKLT- 301 (388)
Q Consensus 229 ~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~-e~~~- 301 (388)
....+.+ . .++..||+|+ |++.+| .. +|++ ++++ .++..++.++.+ +...
T Consensus 159 ~~~vl~~---l----d~~~~lS~g~-r~v~la---l~------~p~~------t~Gldp~~~~~l~~ller~~~~~~Gsi 215 (347)
T 2obl_A 159 GKNVLLM---M----DSVTRYARAA-RDVGLA---SG------EPDV------RGGFPPSVFSSLPKLLERAGPAPKGSI 215 (347)
T ss_dssp TCEEEEE---E----ETHHHHHHHH-HHHHHH---TT------CCCC------BTTBCHHHHHHHHHHHTTCEECSSSEE
T ss_pred cccHHHH---H----hhHHHHHHHH-HHHHHH---cC------CCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCe
Confidence 0111111 1 3578899999 888888 23 5664 5666 555666655543 2233
Q ss_pred ----HHHHHHHhHHHHHHHHHHHHHH
Q psy14062 302 ----RVQLVETDLKALEPELRKAVNF 323 (388)
Q Consensus 302 ----~ii~vtH~l~~l~~~~d~~~~y 323 (388)
+|++++||++ +..+|++.-.
T Consensus 216 T~~~tVl~~thdl~--~~i~d~v~~i 239 (347)
T 2obl_A 216 TAIYTVLLESDNVN--DPIGDEVRSI 239 (347)
T ss_dssp EEEEEEECCSSCCC--CHHHHHHHHH
T ss_pred eeEEEEEEeCCCCC--ChhhhheEEe
Confidence 5889999998 7788887665
No 125
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.66 E-value=8.6e-09 Score=92.89 Aligned_cols=47 Identities=36% Similarity=0.660 Sum_probs=39.0
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
|.|..|.+.||++|.+.. + +|+ ..+++|+|||||||||++.+|
T Consensus 1 M~i~~l~i~nf~~~~~~~-i-~f~-----------------------------------~~~~~I~G~NgsGKStil~ai 43 (203)
T 3qks_A 1 MKLERVTVKNFRSHSDTV-V-EFK-----------------------------------EGINLIIGQNGSGKSSLLDAI 43 (203)
T ss_dssp CEEEEEEEESBTTBSSEE-E-ECC-----------------------------------SEEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEEEECCcCccceE-E-EeC-----------------------------------CCeEEEEcCCCCCHHHHHHHH
Confidence 578899999999998643 3 343 579999999999999999999
Q ss_pred hhcc
Q psy14062 155 LFRF 158 (388)
Q Consensus 155 ~~~~ 158 (388)
.+.+
T Consensus 44 ~~~l 47 (203)
T 3qks_A 44 LVGL 47 (203)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9633
No 126
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.59 E-value=1.5e-10 Score=107.13 Aligned_cols=37 Identities=30% Similarity=0.364 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCccee
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNV 172 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i 172 (388)
+++++|+||||||||||+++|+..+ |+. ...+|.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l-g~~-~~~~G~i~~ 63 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF-GLQ-HLSSGHFLR 63 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH-CCC-CEEHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh-CCe-EecHHHHHH
Confidence 6899999999999999999998443 344 334666544
No 127
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.58 E-value=7e-10 Score=106.27 Aligned_cols=60 Identities=15% Similarity=0.076 Sum_probs=38.3
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCccee---ehhhhhhcCccchhhhhccceeEecccCCC
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNV---IDSMLFVFGYRASKIRANKLSVLMHKSDQV 202 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i---~da~i~vlg~~~~~lr~~~i~~l~q~~~~~ 202 (388)
|++++|+||||||||||+++|+ .. ++.+|++.+ .|..+. ......+...+++++|.|...
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~-----~~~~G~i~~~~~~G~~~t---~~~~~~~~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE-----ELRTQEVSEKTERGRHTT---TGVRLIPFGKGSFVGDTPGFS 227 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC-----CCCCSCC---------CC---CCEEEEEETTTEEEESSCCCS
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh-----hCcccccccccCCCCCce---eeEEEEEcCCCcEEEECcCcC
Confidence 8999999999999999999998 32 456888766 433221 011112223589999987543
No 128
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.55 E-value=3.1e-10 Score=113.41 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.1
Q ss_pred EEEEcCCCCChhhHHhhhhhcccEEE
Q psy14062 137 NAIIGPNGSGKSNVIDSMLFRFNAII 162 (388)
Q Consensus 137 ~~iiGpnGsGKSTLl~~i~~~~ngIi 162 (388)
++||||||||||||+++|+ |..
T Consensus 34 I~lvG~sGaGKSTLln~L~----g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLF----LTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHT----TCC
T ss_pred EEEECCCCCcHHHHHHHHh----CCC
Confidence 4999999999999999999 765
No 129
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.54 E-value=2.1e-08 Score=89.34 Aligned_cols=61 Identities=10% Similarity=0.184 Sum_probs=38.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEecccCCCCCcc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVS 206 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~~~~~~ 206 (388)
|++++|+||||||||||+++|+ ++. | .+.+.+..+ ...........++++|+++..++..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~----~~~-~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALV----KAL-A----EIKISISHT---TRPKRPGDQEGVDYFFIDETRFQAMV 67 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH----HHS-S----SEEECCCEE---CSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHH----hhC-C----CeEEeceec---cCCCchhHhcCceEEeccHHHHHHHH
Confidence 8999999999999999999999 664 3 122222111 11111112345888888766554433
No 130
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.52 E-value=2.2e-09 Score=116.49 Aligned_cols=73 Identities=21% Similarity=0.214 Sum_probs=62.6
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCCCc--eEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNR--FLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALE 314 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~--~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~ 314 (388)
.++++..|||||+||+.||++|.. +|. +|||||||++| +.+.+.++++++++. +|++||||++.+.
T Consensus 458 l~r~~~~LSGGe~QRv~LAraL~~------~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~-TvivVtHd~~~~~ 530 (916)
T 3pih_A 458 LSRSATTLSGGESQRIRLATQIGS------GLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGN-TVIVVEHDEEVIR 530 (916)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHT------TCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTC-EEEEECCCHHHHH
T ss_pred ccCCcccCCHHHHHHHHHHHHHhh------CCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCC-EEEEEeCCHHHHH
Confidence 467889999999999999999998 776 99999999999 778888888877766 4999999998876
Q ss_pred HHHHHHHH
Q psy14062 315 PELRKAVN 322 (388)
Q Consensus 315 ~~~d~~~~ 322 (388)
. +|++..
T Consensus 531 ~-aD~ii~ 537 (916)
T 3pih_A 531 N-ADHIID 537 (916)
T ss_dssp T-CSEEEE
T ss_pred h-CCEEEE
Confidence 4 776543
No 131
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.51 E-value=4.3e-08 Score=93.65 Aligned_cols=61 Identities=10% Similarity=0.108 Sum_probs=37.9
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCccee---ehhhhhhcCccchhhhhccceeEecccCCC
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNV---IDSMLFVFGYRASKIRANKLSVLMHKSDQV 202 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i---~da~i~vlg~~~~~lr~~~i~~l~q~~~~~ 202 (388)
|++++|+|||||||||||++|+ |+. ++.+|.+.+ .|..+... ....+.+.++++||.|...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~----g~~-~~~~G~i~~~~~~g~~~t~~---~~~~~~~~~g~v~q~p~~~ 232 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAIN----PGL-KLRVSEVSEKLQRGRHTTTT---AQLLKFDFGGYVVDTPGFA 232 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHS----TTC-CCC-------------CCCS---CCEEECTTSCEEESSCSST
T ss_pred CCeEEEECCCCCcHHHHHHHhc----ccc-cccccceecccCCCCCceee---eEEEEcCCCCEEEECcCCC
Confidence 8999999999999999999999 888 667899776 44332211 1112223589999987643
No 132
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.49 E-value=2.1e-08 Score=96.15 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=33.3
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcC-CCCCcceeehhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGP-NGSGKSNVIDSM 176 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGp-ngSGKs~i~da~ 176 (388)
|++++|+||||||||||+++|+ ++++. +.+|++.+++.+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~----~~l~~~~~~G~i~vi~~d 119 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQ----ALLSRWPEHRRVELITTD 119 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH----HHHTTSTTCCCEEEEEGG
T ss_pred CEEEEEECCCCCCHHHHHHHHH----HHHhhCCCCCeEEEEecC
Confidence 8999999999999999999999 88841 568998885544
No 133
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.45 E-value=2.5e-08 Score=102.08 Aligned_cols=53 Identities=17% Similarity=0.338 Sum_probs=45.4
Q ss_pred CCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhh
Q psy14062 97 FNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSM 176 (388)
Q Consensus 97 f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~ 176 (388)
|+..+++++++.+.. |+.++|+|||||||||||++++ +++ ++.+|.+.+.|..
T Consensus 245 ~~~~~l~~l~~~v~~----------------------g~~i~I~GptGSGKTTlL~aL~----~~i-~~~~giitied~~ 297 (511)
T 2oap_1 245 VPSGVLAYLWLAIEH----------------------KFSAIVVGETASGKTTTLNAIM----MFI-PPDAKVVSIEDTR 297 (511)
T ss_dssp SCHHHHHHHHHHHHT----------------------TCCEEEEESTTSSHHHHHHHHG----GGS-CTTCCEEEEESSC
T ss_pred CCHHHHHHHHHHHhC----------------------CCEEEEECCCCCCHHHHHHHHH----hhC-CCCCCEEEEcCcc
Confidence 445567788888888 8999999999999999999999 888 7778988887754
No 134
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.44 E-value=1.6e-08 Score=100.85 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=26.7
Q ss_pred CCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEe
Q psy14062 243 NSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLIL 278 (388)
Q Consensus 243 ~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLl 278 (388)
..+...||++++++..++++|.. .|.++++
T Consensus 247 ~~~~~~ls~g~~el~~la~aL~~------~P~ILVl 276 (416)
T 1udx_A 247 DEPLKTLETLRKEVGAYDPALLR------RPSLVAL 276 (416)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHH------SCEEEEE
T ss_pred cCCHHHHHHHHHHHHHHhHHhhc------CCEEEEE
Confidence 45677899999999999999999 9999987
No 135
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.44 E-value=5.1e-08 Score=89.02 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=22.4
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh-hcc
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML-FRF 158 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~-~~~ 158 (388)
..++||++.+ |++++|+||||||||||+++|+ ..+
T Consensus 17 ~~~~sl~v~~----------------------G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 17 QGPGSMLKSV----------------------GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -----CCEEC----------------------CCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCcccCC----------------------CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4599999999 9999999999999999999998 543
No 136
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.39 E-value=2.2e-08 Score=108.69 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=62.8
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCC--CceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLN--NRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALE 314 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~--p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~ 314 (388)
.+++...|||||+||+.||++|.. + |.+|||||||++| +.+...++++++.+. +|++|+|+++.+.
T Consensus 515 l~r~~~tLSGGEkQRV~LA~aL~~------~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~-TVIvVeHdl~~i~ 587 (993)
T 2ygr_A 515 LSRAAATLSGGEAQRIRLATQIGS------GLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGN-TLIVVEHDEDTIE 587 (993)
T ss_dssp TTCBGGGCCHHHHHHHHHHHHHTT------CCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTC-EEEEECCCHHHHH
T ss_pred cCCCcccCCHHHHHHHHHHHHHhh------CCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCC-EEEEECCCHHHHH
Confidence 467899999999999999999998 7 5899999999999 778888888887766 4999999999875
Q ss_pred HHHHHHHH
Q psy14062 315 PELRKAVN 322 (388)
Q Consensus 315 ~~~d~~~~ 322 (388)
.||++..
T Consensus 588 -~ADrIi~ 594 (993)
T 2ygr_A 588 -HADWIVD 594 (993)
T ss_dssp -TCSEEEE
T ss_pred -hCCEEEE
Confidence 5777654
No 137
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.38 E-value=2.2e-08 Score=108.41 Aligned_cols=72 Identities=19% Similarity=0.190 Sum_probs=62.1
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCC--CceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLN--NRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALE 314 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~--p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~ 314 (388)
.+++..+|||||+||+.||++|.. + |.+|||||||++| +.+++.++++++.+.+ |++|+|+++.+.
T Consensus 498 ldR~~~tLSGGEkQRV~LA~aL~~------~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~T-VIvVeHdl~~i~ 570 (972)
T 2r6f_A 498 LSRSAGTLSGGEAQRIRLATQIGS------RLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNT-LIVVEHDEDTML 570 (972)
T ss_dssp SSSBGGGCCHHHHHHHHHHHHHTT------CCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCE-EEEECCCHHHHH
T ss_pred cCCccccCCHHHHHHHHHHHHHhh------CCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCHHHHH
Confidence 367889999999999999999998 6 4899999999999 7888899999877664 999999998875
Q ss_pred HHHHHHH
Q psy14062 315 PELRKAV 321 (388)
Q Consensus 315 ~~~d~~~ 321 (388)
.||++.
T Consensus 571 -~ADrIi 576 (972)
T 2r6f_A 571 -AADYLI 576 (972)
T ss_dssp -SCSEEE
T ss_pred -hCCEEE
Confidence 477654
No 138
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.34 E-value=5.8e-08 Score=96.10 Aligned_cols=51 Identities=10% Similarity=0.057 Sum_probs=33.7
Q ss_pred CC--ceEEeccchhhH-----HHHHhhhHHH-HHHhhhHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14062 272 NN--RFLILQEPIAKM-----EVLYGKYDEE-RTEKLTRVQLVETDLKALEPELRKAVNFLE 325 (388)
Q Consensus 272 ~p--~~LLlDEP~s~L-----e~i~~~l~el-~~e~~~~ii~vtH~l~~l~~~~d~~~~y~~ 325 (388)
+| ++.++|||+..+ +..+..+... ...+. ++ ++|.+..+...++++.+++.
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~-ti--~sh~~~~~~~l~~~i~~~L~ 197 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGAN-TL--EMKAKKEEQAIIEKVYQYLT 197 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSC-SS--SHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCC-cc--ccccHHHHHHHHHHHHHHhc
Confidence 46 788899999887 2233333333 22222 23 39999999999999986643
No 139
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.34 E-value=2.7e-08 Score=85.24 Aligned_cols=22 Identities=27% Similarity=0.592 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|+.++|+||||||||||+++++
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~ 57 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWV 57 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999999999999
No 140
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.32 E-value=2.3e-07 Score=81.58 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=31.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLF 178 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~ 178 (388)
|++++|+||||||||||+++|+ +. +++|.+.+.+..++
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La----~~---~~~g~i~i~~d~~~ 46 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALA----NL---PGVPKVHFHSDDLW 46 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHH----TC---SSSCEEEECTTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH----hc---cCCCeEEEcccchh
Confidence 8999999999999999999999 64 45787777655443
No 141
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.31 E-value=4.5e-08 Score=100.44 Aligned_cols=69 Identities=9% Similarity=-0.011 Sum_probs=58.5
Q ss_pred CCeeee-CCccccHHHHHHHHHHcCCCCCCC--ceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHH
Q psy14062 244 SSYYTL-NGKKVHFKEVAKVLRDHGVDLLNN--RFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEP 315 (388)
Q Consensus 244 ~~~~~L-SgGq~qr~~Ia~aL~~~Gi~~~~p--~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~ 315 (388)
.++..| ||||+||+.||++|.. +| ++||||||+++| ..+...+.++.+ +. +|+++||+++.+.
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~------~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~-~vi~itH~~~~~~- 462 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVL------GADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TR-QVLVVTHLAQIAA- 462 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHH------CCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HS-EEEEECCCHHHHH-
T ss_pred ccHHhcCCHHHHHHHHHHHHHHh------CCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CC-EEEEEecCHHHHH-
Confidence 456777 9999999999999999 99 999999999999 777888888876 54 5999999998765
Q ss_pred HHHHHH
Q psy14062 316 ELRKAV 321 (388)
Q Consensus 316 ~~d~~~ 321 (388)
.||++.
T Consensus 463 ~~d~~~ 468 (517)
T 4ad8_A 463 RAHHHY 468 (517)
T ss_dssp HSSEEE
T ss_pred hCCEEE
Confidence 577653
No 142
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.29 E-value=1.4e-07 Score=90.48 Aligned_cols=60 Identities=8% Similarity=0.102 Sum_probs=32.0
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCccee---ehhhhhhcCccchhhhhccceeEecccCCC
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNV---IDSMLFVFGYRASKIRANKLSVLMHKSDQV 202 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i---~da~i~vlg~~~~~lr~~~i~~l~q~~~~~ 202 (388)
|++++|+||||||||||+++|+ |.. ++.+|.+.+ .|..+.- ...+....+++++|.|...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~----g~~-~~~~G~I~~~~~~G~~tt~----~~~~~~~~~g~v~dtpg~~ 235 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAIS----PEL-GLRTNEISEHLGRGKHTTR----HVELIHTSGGLVADTPGFS 235 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHC----C--------------------CC----CCCEEEETTEEEESSCSCS
T ss_pred CCEEEEECCCCCCHHHHHHHhc----ccc-cccccceeeecCCCccccc----HHHHhhcCCEEEecCCCcc
Confidence 8999999999999999999999 887 556888655 2221110 0111111268888876543
No 143
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.28 E-value=4.3e-08 Score=105.51 Aligned_cols=72 Identities=24% Similarity=0.236 Sum_probs=61.5
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCCC--ceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNN--RFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALE 314 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p--~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~ 314 (388)
.+++...|||||+||+.||++|.. +| .+|||||||++| +.+...++++++.+.+ |++|+|+++.+.
T Consensus 373 l~r~~~tLSGGe~QRV~LA~aL~~------~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~T-VIvVeHdl~~l~ 445 (842)
T 2vf7_A 373 LDRSTPTLSPGELQRLRLATQLYS------NLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNS-LFVVEHDLDVIR 445 (842)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHTTT------CCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCE-EEEECCCHHHHT
T ss_pred ccCCcCcCCHHHHHHHHHHHHHhh------CCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCE-EEEEcCCHHHHH
Confidence 467899999999999999999998 77 599999999999 7788888888877664 999999998664
Q ss_pred HHHHHHH
Q psy14062 315 PELRKAV 321 (388)
Q Consensus 315 ~~~d~~~ 321 (388)
.+|++.
T Consensus 446 -~aD~ii 451 (842)
T 2vf7_A 446 -RADWLV 451 (842)
T ss_dssp -TCSEEE
T ss_pred -hCCEEE
Confidence 466543
No 144
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.26 E-value=1.5e-07 Score=84.53 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCC--CCCcceeeh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPN--GSGKSNVID 174 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpn--gSGKs~i~d 174 (388)
|++++|+||||||||||+++|+ +++.|. ..|.+.+++
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~----~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLA----AALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHH----HHHHHTTCCEEEEESGG
T ss_pred CeEEEEECCCCCCHHHHHHHHH----HHHhhcCCceEEEecCC
Confidence 8999999999999999999999 777442 245554443
No 145
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.19 E-value=4.2e-07 Score=80.21 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAII 162 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIi 162 (388)
|++++|+||||||||||+++|+ +++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~----~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLF----AEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHH----HHC
T ss_pred CCEEEEECCCCCCHHHHHHHHH----hhC
Confidence 4689999999999999999999 776
No 146
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.17 E-value=6.7e-08 Score=84.99 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=53.5
Q ss_pred CCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHHHHHH
Q psy14062 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKALEPE 316 (388)
Q Consensus 242 ~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~l~~~ 316 (388)
.......|||||+||+.||++|+..- ...|+++|||||+++| ..+...++++.... +++++||+... ...
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~--~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~--~~ivith~~~~-~~~ 132 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQK--FKPAPFYLFDEIDAHLDDANVKRVADLIKESSKES--QFIVITLRDVM-MAN 132 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHH--HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTS--EEEEECSCHHH-HTT
T ss_pred cccccccCCHHHHHHHHHHHHHHhcc--cCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCC--EEEEEEecHHH-HHh
Confidence 34567889999999999999998500 0035899999999999 56666776665432 47888998654 345
Q ss_pred HHHH
Q psy14062 317 LRKA 320 (388)
Q Consensus 317 ~d~~ 320 (388)
+|++
T Consensus 133 ad~i 136 (173)
T 3kta_B 133 ADKI 136 (173)
T ss_dssp CSEE
T ss_pred CCEE
Confidence 5554
No 147
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.14 E-value=7.5e-07 Score=88.92 Aligned_cols=52 Identities=19% Similarity=0.296 Sum_probs=41.2
Q ss_pred chhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhh
Q psy14062 119 GLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSML 177 (388)
Q Consensus 119 ~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i 177 (388)
+....|+.+. ..-|++++|+|||||||||||++|+ +++ ++.+|++.+.+..+
T Consensus 154 ~~~~~L~~l~--~~~ggii~I~GpnGSGKTTlL~all----g~l-~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 154 HNHDNFRRLI--KRPHGIILVTGPTGSGKSTTLYAGL----QEL-NSSERNILTVEDPI 205 (418)
T ss_dssp HHHHHHHHHH--TSSSEEEEEECSTTSCHHHHHHHHH----HHH-CCTTSCEEEEESSC
T ss_pred HHHHHHHHHH--HhcCCeEEEECCCCCCHHHHHHHHH----hhc-CCCCCEEEEecccc
Confidence 4456777772 3557899999999999999999999 887 55689988777554
No 148
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.12 E-value=4.1e-07 Score=81.12 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcc--eeehhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKS--NVIDSML 177 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs--~i~da~i 177 (388)
|++++|+|||||||||++++|+ +.++ .+|.+ .+++..+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La----~~l~--~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALN----QMLY--QKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH----HHHH--HTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH----HHHH--hcCceEEEecCchh
Confidence 9999999999999999999999 7663 35665 5655443
No 149
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.12 E-value=1e-06 Score=78.40 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=22.5
Q ss_pred ccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 101 EVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 101 ~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+++||||++.+ +.+++|+||+||||||+.+.|+
T Consensus 14 ~~~~~~~~~~~----------------------~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 14 GTENLYFQSNA----------------------MVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp ----------C----------------------CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCceeEecCC----------------------CCEEEEEcCCCCCHHHHHHHHH
Confidence 36699999999 9999999999999999999999
No 150
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.10 E-value=6.9e-07 Score=79.81 Aligned_cols=22 Identities=32% Similarity=0.674 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|++++|+||||||||||+++|+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~ 25 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLF 25 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 7899999999999999999999
No 151
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.09 E-value=8.4e-07 Score=77.85 Aligned_cols=22 Identities=14% Similarity=0.610 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|++++|+||||||||||+++|+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~ 26 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLI 26 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999999999999
No 152
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.05 E-value=1.2e-06 Score=78.14 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|++++|+||||||||||+++|+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999999999999
No 153
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.05 E-value=1.2e-06 Score=77.82 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|.+++|+|||||||||++++|+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~ 27 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIF 27 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999999999999
No 154
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.03 E-value=7.3e-07 Score=82.94 Aligned_cols=51 Identities=24% Similarity=0.224 Sum_probs=31.3
Q ss_pred cEEEEEE-EeeceEEe-cCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHH
Q psy14062 74 RLIITKI-VAFNFKSY-AGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVI 151 (388)
Q Consensus 74 ~l~i~~l-~~~~fksy-~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl 151 (388)
.+.+.++ + ++| ++..+| +++||+|.+ ++ -|++++|+||+||||||+.
T Consensus 17 ~l~~~~~~~----~~~~~~~~~l--------~~~~~~i~~-----------~l--------~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 17 LLETGSLLH----SPFDEEQQIL--------KKKAEEVKP-----------YL--------NGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp -------------------CHHH--------HHHHHTTHH-----------HH--------TTCCEEEECSTTSCHHHHH
T ss_pred ceEEcceee----EEecCcchhh--------hhhhhhhhh-----------hc--------CCCEEEEECCCCCCHHHHH
Confidence 5566666 6 678 555554 499999986 11 0689999999999999999
Q ss_pred hhhh
Q psy14062 152 DSML 155 (388)
Q Consensus 152 ~~i~ 155 (388)
++|+
T Consensus 66 ~~La 69 (250)
T 3nwj_A 66 KIMA 69 (250)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9999
No 155
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.03 E-value=2.7e-07 Score=91.55 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=22.4
Q ss_pred cccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 129 GTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 129 ~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+...-|++++|+||||||||||++.++
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 344459999999999999999999553
No 156
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.03 E-value=3.3e-07 Score=80.36 Aligned_cols=40 Identities=25% Similarity=0.362 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCChhhHHhhhhhcccEEEcCCC--CCcceeehhhhh
Q psy14062 135 RFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNG--SGKSNVIDSMLF 178 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpng--SGKs~i~da~i~ 178 (388)
++++|+||||||||||+++|. +++-|.+ +|.+.+++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~----~~~~~~g~~~G~I~~dg~~i~ 44 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMM----PILRERGLRVAVVKRHAHGDF 44 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHH----HHHHHTTCCEEEEEC------
T ss_pred eEEEEECCCCCCHHHHHHHHH----HHhhhcCCceEEEEEcCcccc
Confidence 589999999999999999999 7774443 788888776543
No 157
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.02 E-value=1.8e-06 Score=75.96 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSM 176 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~ 176 (388)
|++++|+||||||||||+++|+ + + .+|.+.+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~----~---~-~~g~~~i~~d~ 36 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLA----A---Q-LDNSAYIEGDI 36 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH----H---H-SSSEEEEEHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHh----c---c-cCCeEEEcccc
Confidence 6799999999999999999998 4 2 36776666543
No 158
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.01 E-value=2.1e-06 Score=82.68 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=31.9
Q ss_pred EEEEEcCCCCChhhHHhhhhhcccEEEcC-CCCCcceeehhhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLFRFNAIIGP-NGSGKSNVIDSMLFV 179 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~~~ngIiGp-ngSGKs~i~da~i~v 179 (388)
+++|+||||||||||+++|+ +++++ +++|++.+++.+.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~----~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLK----ALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHH----HHHTTSTTCCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHH----HHhcccCCCCeEEEEeecccc
Confidence 89999999999999999999 77743 356777776665543
No 159
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.01 E-value=5.4e-07 Score=94.10 Aligned_cols=44 Identities=27% Similarity=0.324 Sum_probs=34.9
Q ss_pred ccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCccee
Q psy14062 103 EQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNV 172 (388)
Q Consensus 103 ~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i 172 (388)
+++++.+.. |+.++|+||||||||||+++|+ +++.+..-|.+.+
T Consensus 51 ~~l~~~i~~----------------------g~~vll~Gp~GtGKTtlar~ia----~~l~~~~~~~~~~ 94 (604)
T 3k1j_A 51 EVIKTAANQ----------------------KRHVLLIGEPGTGKSMLGQAMA----ELLPTETLEDILV 94 (604)
T ss_dssp HHHHHHHHT----------------------TCCEEEECCTTSSHHHHHHHHH----HTSCCSSCEEEEE
T ss_pred hhccccccC----------------------CCEEEEEeCCCCCHHHHHHHHh----ccCCcccCCeEEE
Confidence 388888888 8999999999999999999999 7764432244443
No 160
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.99 E-value=1.3e-06 Score=82.27 Aligned_cols=128 Identities=12% Similarity=0.187 Sum_probs=70.9
Q ss_pred cccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcC
Q psy14062 102 VEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFG 181 (388)
Q Consensus 102 l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg 181 (388)
++++++.++. | ++|+||||||||||+++|+ +..++ |.+.+.+..+. .
T Consensus 36 l~~~~l~~~~----------------------G--vlL~Gp~GtGKTtLakala----~~~~~---~~i~i~g~~l~--~ 82 (274)
T 2x8a_A 36 FKALGLVTPA----------------------G--VLLAGPPGCGKTLLAKAVA----NESGL---NFISVKGPELL--N 82 (274)
T ss_dssp HHHTTCCCCS----------------------E--EEEESSTTSCHHHHHHHHH----HHTTC---EEEEEETTTTC--S
T ss_pred HHHcCCCCCC----------------------e--EEEECCCCCcHHHHHHHHH----HHcCC---CEEEEEcHHHH--h
Confidence 4588888888 7 9999999999999999999 66543 56666654432 1
Q ss_pred ccchhhhhccceeEeccc-CCCCCcceEEEEEEeccccCCCCccccccCCceEEEEEEeeeCCCCeeeeCCccccHHHHH
Q psy14062 182 YRASKIRANKLSVLMHKS-DQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVA 260 (388)
Q Consensus 182 ~~~~~lr~~~i~~l~q~~-~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~LSgGq~qr~~Ia 260 (388)
..... ..+.++++|+.. ...|. + .++..+....... ...... ......++....||||++|+..++
T Consensus 83 ~~~~~-~~~~i~~vf~~a~~~~p~-----i-~~~Deid~~~~~r----~~~~~~--~~~~~~~~~l~~Lsgg~~~~~~i~ 149 (274)
T 2x8a_A 83 MYVGE-SERAVRQVFQRAKNSAPC-----V-IFFDEVDALCPRR----SDRETG--ASVRVVNQLLTEMDGLEARQQVFI 149 (274)
T ss_dssp STTHH-HHHHHHHHHHHHHHTCSE-----E-EEEETCTTTCC---------------CTTHHHHHHHHHHTCCSTTCEEE
T ss_pred hhhhH-HHHHHHHHHHHHHhcCCC-----e-Eeeehhhhhhccc----CCCcch--HHHHHHHHHHHhhhcccccCCEEE
Confidence 11111 223477788764 22221 1 1121110000000 000000 000111234567899999998888
Q ss_pred HHHHHcCCCCCCCceEEeccchh
Q psy14062 261 KVLRDHGVDLLNNRFLILQEPIA 283 (388)
Q Consensus 261 ~aL~~~Gi~~~~p~~LLlDEP~s 283 (388)
.++.. +|++ +|+++.
T Consensus 150 ia~tn------~p~~--LD~al~ 164 (274)
T 2x8a_A 150 MAATN------RPDI--IDPAIL 164 (274)
T ss_dssp EEEES------CGGG--SCHHHH
T ss_pred EeecC------Chhh--CCHhhc
Confidence 77776 7765 477764
No 161
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.92 E-value=2e-06 Score=82.88 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=41.3
Q ss_pred ccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhh
Q psy14062 103 EQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLF 178 (388)
Q Consensus 103 ~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~ 178 (388)
.++||.+.+ +++++|+|||||||||++..|+ +.+ ....|++.+.|++.+
T Consensus 96 ~~l~~~~~~----------------------~~vI~ivG~~G~GKTT~~~~LA----~~l-~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 96 YRIDFKENR----------------------LNIFMLVGVNGTGKTTSLAKMA----NYY-AELGYKVLIAAADTF 144 (320)
T ss_dssp CCCCCCTTS----------------------CEEEEEESSTTSSHHHHHHHHH----HHH-HHTTCCEEEEECCCS
T ss_pred cCccccCCC----------------------CeEEEEECCCCCCHHHHHHHHH----HHH-HHCCCeEEEEeCCCc
Confidence 478888888 9999999999999999999999 776 334688888887754
No 162
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.90 E-value=5e-06 Score=75.82 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=29.0
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSML 177 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i 177 (388)
|.+++|+||||||||||+++|+ +. +|++.+.+...
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~----~~-----~g~v~~~~~~~ 54 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFE----KY-----KNDICLLTEPV 54 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTG----GG-----TTTEEEECCTH
T ss_pred ceEEEEECCCCCCHHHHHHHHH----hc-----cCCeEEEecCH
Confidence 8999999999999999999999 54 46666665543
No 163
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.87 E-value=3.3e-06 Score=75.34 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=32.1
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLF 178 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~ 178 (388)
+.+++|+||||||||||+++|+ +.+ ++..|.+.+.+.+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~----~~~-~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLS----QTL-REQGISVCVFHMDDH 61 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH----HHH-HHTTCCEEEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHH----HHH-hhcCCeEEEeccCcc
Confidence 7899999999999999999999 766 334677777655544
No 164
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.84 E-value=5e-06 Score=81.81 Aligned_cols=33 Identities=30% Similarity=0.458 Sum_probs=30.4
Q ss_pred ccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 101 EVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 101 ~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+++++|+.+++ |++++|+||||||||||+++|+
T Consensus 158 ~l~~~~~~i~~----------------------~~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 158 FLKCMVYNIPK----------------------KRYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp HHHHHHHCCTT----------------------CCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHhcccccCC----------------------CCEEEEECCCCCCHHHHHHHHH
Confidence 35588899998 9999999999999999999999
No 165
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.84 E-value=3.1e-06 Score=78.47 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcce
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSN 171 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~ 171 (388)
|.+++|+|||||||||++++|+..+ |+. ..++|.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L-g~~-~~d~g~i~ 62 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL-NWR-LLDSGAIY 62 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT-TCE-EEEHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc-CCC-cCCCCcee
Confidence 8899999999999999999998443 233 33467643
No 166
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.83 E-value=2.4e-06 Score=74.62 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|+.++|+||||||||||+++++
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 8899999999999999999999
No 167
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.83 E-value=4.4e-06 Score=77.00 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=43.5
Q ss_pred ccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCc
Q psy14062 103 EQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGY 182 (388)
Q Consensus 103 ~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~ 182 (388)
+++++.+++ | ++|+||||||||||+++|+ +.. ++|.+.+.+..+.-...
T Consensus 42 ~~~~~~~~~----------------------g--~ll~G~~G~GKTtl~~~i~----~~~---~~~~i~~~~~~~~~~~~ 90 (254)
T 1ixz_A 42 HEMGARIPK----------------------G--VLLVGPPGVGKTHLARAVA----GEA---RVPFITASGSDFVEMFV 90 (254)
T ss_dssp HHTTCCCCS----------------------E--EEEECCTTSSHHHHHHHHH----HHT---TCCEEEEEHHHHHHSCT
T ss_pred HHcCCCCCC----------------------e--EEEECCCCCCHHHHHHHHH----HHh---CCCEEEeeHHHHHHHHh
Confidence 488898888 7 8999999999999999999 554 26777777665432111
Q ss_pred cchhhhhccceeEeccc
Q psy14062 183 RASKIRANKLSVLMHKS 199 (388)
Q Consensus 183 ~~~~lr~~~i~~l~q~~ 199 (388)
. ...+.++.+||..
T Consensus 91 --~-~~~~~i~~~~~~~ 104 (254)
T 1ixz_A 91 --G-VGAARVRDLFETA 104 (254)
T ss_dssp --T-HHHHHHHHHHHHH
T ss_pred --h-HHHHHHHHHHHHH
Confidence 1 1123466677764
No 168
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.81 E-value=4.2e-06 Score=80.08 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=33.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLF 178 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~ 178 (388)
+++++|+|||||||||++..|+ +.+.+ ..|++.+.+++.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA----~~l~~-~g~kV~lv~~D~~ 143 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLA----KMFVD-EGKSVVLAAADTF 143 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH----HHHHH-TTCCEEEEEECTT
T ss_pred CeEEEEEcCCCChHHHHHHHHH----HHHHh-cCCEEEEEccccc
Confidence 8999999999999999999999 77734 4678877776543
No 169
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.79 E-value=5.5e-06 Score=77.58 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=43.6
Q ss_pred ccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhhhcCc
Q psy14062 103 EQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGY 182 (388)
Q Consensus 103 ~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~vlg~ 182 (388)
+++++.+++ | ++|+||||||||||+++|+ +.. .+|.+.+.+..+.-...
T Consensus 66 ~~~~~~~~~----------------------g--vll~Gp~GtGKTtl~~~i~----~~~---~~~~i~~~~~~~~~~~~ 114 (278)
T 1iy2_A 66 HEMGARIPK----------------------G--VLLVGPPGVGKTHLARAVA----GEA---RVPFITASGSDFVEMFV 114 (278)
T ss_dssp HHTTCCCCC----------------------E--EEEECCTTSSHHHHHHHHH----HHT---TCCEEEEEHHHHHHSTT
T ss_pred HHcCCCCCC----------------------e--EEEECCCcChHHHHHHHHH----HHc---CCCEEEecHHHHHHHHh
Confidence 488898888 7 8999999999999999999 655 26777777655432111
Q ss_pred cchhhhhccceeEeccc
Q psy14062 183 RASKIRANKLSVLMHKS 199 (388)
Q Consensus 183 ~~~~lr~~~i~~l~q~~ 199 (388)
. .....++++||..
T Consensus 115 --~-~~~~~i~~~~~~~ 128 (278)
T 1iy2_A 115 --G-VGAARVRDLFETA 128 (278)
T ss_dssp --T-HHHHHHHHHHHHH
T ss_pred --h-HHHHHHHHHHHHH
Confidence 1 1123466677764
No 170
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.71 E-value=8.2e-06 Score=70.32 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+.+++|+|||||||||++++|+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La 25 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLA 25 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 6789999999999999999999
No 171
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.69 E-value=3.8e-06 Score=81.13 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=35.9
Q ss_pred cEEEEEcCCCCChhhHHhhhhhcccEEEcC---CCCCcceeehhhhhhcCccchhhhhccceeEecccCC
Q psy14062 135 RFNAIIGPNGSGKSNVIDSMLFRFNAIIGP---NGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQ 201 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~~~~ngIiGp---ngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q~~~~ 201 (388)
+.++|+||||||||||+++|+ +.+|. +.+|.+...+..+... ....+...+.++.+....
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia----~~l~~~~~~~sg~~~~~~~~l~~~---~~~~~~~~v~~iDE~~~l 114 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIA----SELQTNIHVTSGPVLVKQGDMAAI---LTSLERGDVLFIDEIHRL 114 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHH----HHHTCCEEEEETTTCCSHHHHHHH---HHHCCTTCEEEEETGGGC
T ss_pred CeEEEECCCCCcHHHHHHHHH----HHhCCCEEEEechHhcCHHHHHHH---HHHccCCCEEEEcchhhc
Confidence 789999999999999999999 54432 2356544433322100 011223456777665443
No 172
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.68 E-value=1.7e-05 Score=71.18 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|++++|+||||||||||++.|+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~ 29 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVF 29 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHH
Confidence 8999999999999999999999
No 173
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.66 E-value=2.2e-05 Score=70.27 Aligned_cols=24 Identities=25% Similarity=0.598 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
|++++|+||||||||||+++|...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 899999999999999999999843
No 174
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.64 E-value=9.6e-06 Score=77.10 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=33.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSML 177 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i 177 (388)
|++++|+|||||||||++..++ +.. ....|++.+.|++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la----~~~-~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLA----LYY-KGKGRRPLLVAADT 136 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHH----HHH-HHTTCCEEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHH----HHH-HHcCCeEEEecCCc
Confidence 8999999999999999999999 777 44468888877654
No 175
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.61 E-value=3.4e-06 Score=84.34 Aligned_cols=66 Identities=14% Similarity=0.166 Sum_probs=49.1
Q ss_pred CCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHHH
Q psy14062 244 SSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLKA 312 (388)
Q Consensus 244 ~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~~ 312 (388)
.++..|||||++++.||++|+.... ..|+++|||||+++| ..+...+.++..++. +++++||+...
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~--~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~-~~ii~th~~~~ 399 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSY--QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDL-QFIVISLKNTM 399 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTS--SCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTB-EEEEECSCHHH
T ss_pred cccccCCcchHHHHHHHHHHHHhcC--CCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCC-EEEEEECCHHH
Confidence 3456799999999999999995321 268999999999999 555556655443333 58899999644
No 176
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.61 E-value=0.00012 Score=70.05 Aligned_cols=141 Identities=26% Similarity=0.403 Sum_probs=87.5
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
|+|..|++.||++|++... |++.+ | +++|+||||||||||+++|
T Consensus 1 M~l~~L~i~nfr~~~~~~~-------------l~~~~----------------------g-~~~i~G~NGsGKS~ll~ai 44 (322)
T 1e69_A 1 MRLKKLYLKGFKSFGRPSL-------------IGFSD----------------------R-VTAIVGPNGSGKSNIIDAI 44 (322)
T ss_dssp CEEEEEEEESBTTBCSCEE-------------EECCS----------------------S-EEEEECCTTTCSTHHHHHH
T ss_pred CeEeEEEEeCceeecCCeE-------------EecCC----------------------C-cEEEECCCCCcHHHHHHHH
Confidence 5789999999999965433 34444 5 9999999999999999999
Q ss_pred hhcccEEEcCCCCCcceeehhhhhhcCccchhhhhccceeEec-ccCCCCCcceEEEEEEeccccCCCCccccccCCceE
Q psy14062 155 LFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMH-KSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDL 233 (388)
Q Consensus 155 ~~~~ngIiGpngSGKs~i~da~i~vlg~~~~~lr~~~i~~l~q-~~~~~~~~~~~eV~~~~~~~~~~~~~~~~~~~~~~l 233 (388)
. .++|.. +|++ .|..+...+++ +....+....++|...|.. .. ..+
T Consensus 45 ~----~llg~~-~~~s----------------~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~----~~--------~~~ 91 (322)
T 1e69_A 45 K----WVFGEQ-SKKE----------------LRASEKFDMIFAGSENLPPAGSAYVELVFEE----NG--------EEI 91 (322)
T ss_dssp H----HTSCC---------------------------CCTTBCCCBTTBCCCSEEEEEEEEES----SS--------CEE
T ss_pred H----HHhCCC-chhh----------------cccccHHHhhccCccCCCCCceEEEEEEEEe----CC--------eEE
Confidence 9 444321 3332 12222222222 2211233456677777631 11 245
Q ss_pred EEEEEeeeCCCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchhhH
Q psy14062 234 EIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKM 285 (388)
Q Consensus 234 ~~~r~~~~~~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s~L 285 (388)
.+.|.....+...+.++|...+..++...+..+|+..... .++.|+.+..+
T Consensus 92 ~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~-~lv~qg~i~~~ 142 (322)
T 1e69_A 92 TVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFY-SIVGQGQIDRI 142 (322)
T ss_dssp EEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCC-SEEEHHHHHHH
T ss_pred EEEEEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhhe-eeEehhhHHHH
Confidence 5555544445567789999998888998887777765432 56778777654
No 177
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.58 E-value=1.4e-05 Score=82.41 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehh
Q psy14062 133 YKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDS 175 (388)
Q Consensus 133 ~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da 175 (388)
-|++++|+|+||||||||+++|+ +.++|.+.|.+.+.|.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La----~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALA----ARLMEMGGRCVTLLDG 406 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHH----HHHHTTCSSCEEEESS
T ss_pred cceEEEEECCCCChHHHHHHHHH----HhhcccCCceEEEECC
Confidence 38999999999999999999999 8885543236654443
No 178
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.56 E-value=3e-05 Score=69.22 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|++++|+||||||||||++.++
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~ 41 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTG 41 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999999
No 179
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.55 E-value=3.7e-05 Score=66.43 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|.+++|+|||||||||++++|+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999999998
No 180
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.53 E-value=1.4e-05 Score=77.37 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+.+++|+|++|||||||++.++
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~ 77 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFG 77 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999998
No 181
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.53 E-value=2.7e-05 Score=70.64 Aligned_cols=22 Identities=14% Similarity=0.376 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|++++|+||||||||||++.|+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLA 45 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 9999999999999999999999
No 182
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.44 E-value=2.3e-05 Score=74.58 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=30.8
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCC-cceeehhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSG-KSNVIDSML 177 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSG-Ks~i~da~i 177 (388)
|++++|+|||||||||++..|+ +.+ .+.+| ++.+.+++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA----~~l-~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA----AIS-MLEKHKKIAFITTDT 144 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH----HHH-HHTTCCCEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH----HHH-HHhcCCEEEEEecCc
Confidence 7899999999999999999999 766 33357 555555543
No 183
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.43 E-value=1.4e-06 Score=85.51 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=47.2
Q ss_pred CCeeeeCCccccHH------HHHHHHHHcCCCCCC-CceEEeccchhhH-----HHHHhhhHHHHHHhhhHHHHHHHhHH
Q psy14062 244 SSYYTLNGKKVHFK------EVAKVLRDHGVDLLN-NRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLK 311 (388)
Q Consensus 244 ~~~~~LSgGq~qr~------~Ia~aL~~~Gi~~~~-p~~LLlDEP~s~L-----e~i~~~l~el~~e~~~~ii~vtH~l~ 311 (388)
.++..|||||+|++ ++|++|.. + |+++|||||+++| ..+...+.++.. .. +++++||+.+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~------~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~-~vi~~th~~~ 347 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIG------NRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IP-QMIIITHHRE 347 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHS------SCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CS-EEEEEESCGG
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhc------CCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CC-eEEEEEChHH
Confidence 35668999999987 45677776 8 9999999999999 445555555422 22 4889999975
Q ss_pred HHHHHHH
Q psy14062 312 ALEPELR 318 (388)
Q Consensus 312 ~l~~~~d 318 (388)
+...++
T Consensus 348 -~~~~~d 353 (371)
T 3auy_A 348 -LEDVAD 353 (371)
T ss_dssp -GGGGCS
T ss_pred -HHhhCC
Confidence 444443
No 184
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.40 E-value=3.4e-05 Score=67.83 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
.++|+||||||||||++.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~ 50 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFT 50 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 58999999999999999998
No 185
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.35 E-value=8.5e-05 Score=67.78 Aligned_cols=22 Identities=41% Similarity=0.753 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|.+++|.||+||||||+++.|.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~ 47 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVY 47 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999999
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.30 E-value=7.8e-05 Score=72.53 Aligned_cols=30 Identities=40% Similarity=0.718 Sum_probs=25.2
Q ss_pred EEEEEcCCCCChhhHHhhhhhcccE--EEcCCCCCcc
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLFRFNA--IIGPNGSGKS 170 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~~~ng--IiGpngSGKs 170 (388)
.++|||++||||||||++|+ | +. |.++|.+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~----g~~~l-p~~~~~v 67 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIV----GKDFL-PRGSGIV 67 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHH----TSCCS-CCCSSSC
T ss_pred EEEEECCCCCcHHHHHHHHh----CCCcC-CCCCCcc
Confidence 48999999999999999999 6 44 7777754
No 187
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.29 E-value=0.0001 Score=66.16 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+.+++|+|||||||||+.++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMA 26 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 188
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.28 E-value=0.00013 Score=63.83 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+..++|+|++||||||+.+.++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999999983
No 189
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.27 E-value=0.00012 Score=64.98 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.+++|+||+||||||+++.|+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999999993
No 190
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.25 E-value=0.00012 Score=65.02 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
+++|+|||||||||+.++|+
T Consensus 4 ~i~l~G~~GsGKST~~~~La 23 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFT 23 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999999
No 191
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.24 E-value=0.00012 Score=70.42 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=24.7
Q ss_pred EEEEcCCCCChhhHHhhhhhcccE-EEcCCCCCcceeehh
Q psy14062 137 NAIIGPNGSGKSNVIDSMLFRFNA-IIGPNGSGKSNVIDS 175 (388)
Q Consensus 137 ~~iiGpnGsGKSTLl~~i~~~~ng-IiGpngSGKs~i~da 175 (388)
+.|.|||||||||++++++ + +. ++.+|++.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la----~~l~-~~~~g~i~~~~~ 73 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALL----ESIF-GPGVYRLKIDVR 73 (354)
T ss_dssp EEEECSTTSSHHHHHHTHH----HHHS-CTTCCC------
T ss_pred EEEECCCCCCHHHHHHHHH----HHHc-CCCCCeEEecce
Confidence 8999999999999999999 7 66 455788766553
No 192
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.19 E-value=9.2e-05 Score=73.84 Aligned_cols=40 Identities=13% Similarity=0.215 Sum_probs=33.3
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLF 178 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~ 178 (388)
+.+++|+|||||||||++..++ +.+ ....|++.+.+++.+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA----~~l-~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLA----LYY-KGKGRRPLLVAADTQ 137 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH----HHH-HTTTCCEEEEECCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHH----HHH-HHcCCeEEEeecccc
Confidence 8899999999999999999999 776 344678888877643
No 193
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.17 E-value=6.6e-05 Score=77.30 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceee
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVI 173 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~ 173 (388)
|.+++|+||||||||||+++|+ +..+++ .|.+++.
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia----~~l~~~-~~~i~~~ 142 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIA----KSLGRK-FVRISLG 142 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHH----HHHTCE-EEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHH----HhcCCC-eEEEEec
Confidence 8899999999999999999999 555332 4554443
No 194
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.17 E-value=0.00015 Score=64.38 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
|.+++|+||||||||||.+.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999999999843
No 195
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.14 E-value=0.00016 Score=63.88 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
+++|+|+|||||||+.+.|+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~ 22 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFR 22 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999999999
No 196
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.11 E-value=0.00016 Score=63.70 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
.++|+||||||||||++.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~ 26 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFT 26 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 47999999999999999998
No 197
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.09 E-value=0.00022 Score=61.88 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|.+++|+|++||||||+.++++
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~ 26 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALE 26 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 8899999999999999999999
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.08 E-value=0.00011 Score=71.27 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+.+++|+|++|||||||++.+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~ 95 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFG 95 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 6789999999999999999998
No 199
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.04 E-value=0.00024 Score=64.31 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|++++|+||||||||||+..++
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999976555
No 200
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.94 E-value=0.00033 Score=61.88 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
..+++|+|++||||||+.+.|+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIA 39 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999998
No 201
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.93 E-value=0.00027 Score=61.63 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeeh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVID 174 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~d 174 (388)
|.+++|+|++||||||+.+.++ ..+++. .|++.+.+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~----~~l~~~-~~~~~~~~ 48 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLA----DLLQKE-GYRVEVLD 48 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH----HHHHHT-TCCEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHH----HHHHhc-CCeEEEee
Confidence 8899999999999999999999 555332 34544443
No 202
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.91 E-value=0.00033 Score=71.25 Aligned_cols=29 Identities=24% Similarity=0.527 Sum_probs=26.3
Q ss_pred ccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 103 EQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 103 ~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.++++.+++ | +.|+||||||||||+++|+
T Consensus 57 ~~lg~~ip~----------------------G--vLL~GppGtGKTtLaraIa 85 (499)
T 2dhr_A 57 HEMGARIPK----------------------G--VLLVGPPGVGKTHLARAVA 85 (499)
T ss_dssp TTTSCCCCS----------------------E--EEEECSSSSSHHHHHHHHH
T ss_pred hhccCCCCc----------------------e--EEEECCCCCCHHHHHHHHH
Confidence 388888888 6 8999999999999999999
No 203
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.88 E-value=0.00021 Score=67.87 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=32.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLF 178 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~ 178 (388)
+.+++++|||||||||++..++ +...+ ..|++.+.+.+.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la----~~~~~-~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLA----YFYKK-KGFKVGLVGADVY 137 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHH----HHHHH-TTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHH----HHHHH-CCCeEEEEecCCC
Confidence 6899999999999999999999 66633 3577888777643
No 204
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.84 E-value=0.00045 Score=65.35 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCChhhHHhhhhhcccEEEcC
Q psy14062 133 YKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGP 164 (388)
Q Consensus 133 ~g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGp 164 (388)
-+.+++|+||+|||||||.+.|. +++++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~----~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIY----NHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH----HHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH----HHhhh
Confidence 36799999999999999999999 66643
No 205
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.83 E-value=0.0005 Score=58.58 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
+++|+||+||||||+.+.|+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 206
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.82 E-value=0.00034 Score=66.38 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+.+++|+|++|||||||++.+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~ 29 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLL 29 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999998
No 207
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.81 E-value=0.00038 Score=67.62 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=21.1
Q ss_pred CcE--EEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRF--NAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~--~~iiGpnGsGKSTLl~~i~~ 156 (388)
|++ ++|+||+||||||+.++|+.
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHH
Confidence 777 89999999999999999983
No 208
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.78 E-value=0.00055 Score=61.10 Aligned_cols=22 Identities=23% Similarity=0.138 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|.+++|+|++||||||+.+.|.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 8899999999999999999998
No 209
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.76 E-value=0.00051 Score=59.57 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|.+++|+||+||||||+.+.|+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 6789999999999999999998
No 210
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.73 E-value=0.00072 Score=58.14 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.++.|+||+||||||+.+.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999983
No 211
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.72 E-value=0.00065 Score=57.73 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
.++|+|++|+|||||++.++
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999988
No 212
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.70 E-value=0.0011 Score=65.17 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
|+..+|+||+|||||||++.|+.
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHH
Confidence 99999999999999999999984
No 213
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.64 E-value=0.00085 Score=58.59 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
-.+++|+||||||||||++.+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 35899999999999999999884
No 214
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.62 E-value=0.00085 Score=56.87 Aligned_cols=19 Identities=37% Similarity=0.440 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChhhHHhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i 154 (388)
+++|+||+||||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999988
No 215
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.58 E-value=0.00041 Score=67.58 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|+++.|+||+|||||||+..++
T Consensus 61 G~i~~I~GppGsGKSTLal~la 82 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAI 82 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999999999998
No 216
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.57 E-value=0.00095 Score=58.23 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
.++|+|++|||||||++.+.
T Consensus 25 ki~~vG~~~vGKSsli~~l~ 44 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLK 44 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999888
No 217
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.57 E-value=0.00046 Score=66.27 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=21.0
Q ss_pred CcE--EEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRF--NAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~--~~iiGpnGsGKSTLl~~i~~ 156 (388)
|++ +.+.||+||||||++++++.
T Consensus 44 g~~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 44 GKLPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp TCCCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 666 99999999999999999994
No 218
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.56 E-value=0.00056 Score=60.22 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
.++|+|++|||||||++.+.
T Consensus 27 ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999887
No 219
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.56 E-value=0.00093 Score=59.02 Aligned_cols=20 Identities=35% Similarity=0.690 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
.++|+||||||||||++.+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999887
No 220
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.56 E-value=0.0011 Score=57.40 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.+++|.||+||||||+.+.|+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999983
No 221
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.55 E-value=0.00097 Score=57.24 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+..++|+|++|||||||++.++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 6679999999999999999998
No 222
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.55 E-value=0.00091 Score=57.89 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
.++|+|++|||||||++.++
T Consensus 4 kv~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999998
No 223
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.53 E-value=0.001 Score=61.00 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhhHHhhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~ 156 (388)
-+.|+||+|||||||+++|+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 488999999999999999984
No 224
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.51 E-value=0.0013 Score=56.79 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.+++|+|++||||||+.+.++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 67899999999999999999983
No 225
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.50 E-value=0.0011 Score=57.95 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhhHHhhhhhcc
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLFRF 158 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~~~ 158 (388)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57999999999999999998543
No 226
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.49 E-value=0.0012 Score=59.87 Aligned_cols=22 Identities=41% Similarity=0.403 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+.+++|+|++||||||+.+.|+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIA 37 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 7899999999999999999998
No 227
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.47 E-value=0.0012 Score=56.93 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
.++|+|++|||||||++.++
T Consensus 9 ~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999988
No 228
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.46 E-value=0.0044 Score=55.11 Aligned_cols=25 Identities=48% Similarity=0.790 Sum_probs=22.4
Q ss_pred ccEEEcCCCCCcceeehhhhhhcCc
Q psy14062 158 FNAIIGPNGSGKSNVIDSMLFVFGY 182 (388)
Q Consensus 158 ~ngIiGpngSGKs~i~da~i~vlg~ 182 (388)
++.|+||||+|||+|++++.|+++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3499999999999999999998865
No 229
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.44 E-value=0.0012 Score=56.88 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhhHHhhhhhc
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
.++|+||+||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999843
No 230
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.44 E-value=0.0013 Score=56.25 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
..+++|+||+||||||+.+.++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHH
Confidence 3578999999999999999998
No 231
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.43 E-value=0.0013 Score=58.68 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+-+++|+|++||||||+.+.|+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999998
No 232
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.42 E-value=0.0011 Score=60.98 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+.+++|+||+||||||+.+.|+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 7789999999999999999998
No 233
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.41 E-value=0.0014 Score=60.05 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+-+++|+||+||||||+.+.|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999983
No 234
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.41 E-value=0.0013 Score=60.59 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhhHHhhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+++|+||+|||||||.+.|+.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 679999999999999999983
No 235
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.41 E-value=0.0016 Score=56.41 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+..++|+||+||||||+.+.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999999983
No 236
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.39 E-value=0.0014 Score=56.98 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.+++|+|++||||||+.+.++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999983
No 237
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.38 E-value=0.0025 Score=53.87 Aligned_cols=23 Identities=52% Similarity=0.858 Sum_probs=20.9
Q ss_pred ccEEEcCCCCCcceeehhhhhhc
Q psy14062 158 FNAIIGPNGSGKSNVIDSMLFVF 180 (388)
Q Consensus 158 ~ngIiGpngSGKs~i~da~i~vl 180 (388)
++.|+||||||||++++|+.|++
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 34999999999999999999887
No 238
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.37 E-value=0.0015 Score=70.05 Aligned_cols=70 Identities=10% Similarity=0.137 Sum_probs=43.1
Q ss_pred CCCeeeeCCccccHHHHHHHHHHcCCCCCCCceEEeccchh-hH--HHHHhhhHHHHHH--hhhHHHH-HHHhHHHHHHH
Q psy14062 243 NSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIA-KM--EVLYGKYDEERTE--KLTRVQL-VETDLKALEPE 316 (388)
Q Consensus 243 ~~~~~~LSgGq~qr~~Ia~aL~~~Gi~~~~p~~LLlDEP~s-~L--e~i~~~l~el~~e--~~~~ii~-vtH~l~~l~~~ 316 (388)
+.....++.|+.++..++..+.. ++.++|+||+.. ++ +.+.+.++.+... ....+++ +||+.+.+.++
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~------~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~ 258 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLS------RYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRY 258 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCT------TEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHH
T ss_pred CCCEEEECHHHHHHHHhhCcccc------CCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHH
Confidence 44566778898888777655444 889999999986 56 3345555554432 1112333 47776655554
Q ss_pred HH
Q psy14062 317 LR 318 (388)
Q Consensus 317 ~d 318 (388)
.+
T Consensus 259 ~~ 260 (773)
T 2xau_A 259 FN 260 (773)
T ss_dssp TT
T ss_pred hc
Confidence 43
No 239
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.36 E-value=0.13 Score=42.85 Aligned_cols=48 Identities=21% Similarity=0.206 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14062 339 QYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKT 386 (388)
Q Consensus 339 ~~~l~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~ 386 (388)
..+++.+..++.+.+.+++++.+++.++++++..++.++.+++.++++
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555666666666667777777777777777777777777666654
No 240
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.33 E-value=0.00073 Score=59.88 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhhHHhhhhhcc
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLFRF 158 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~~~ 158 (388)
+++|.||+||||||+++.|...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998433
No 241
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.28 E-value=0.0017 Score=61.12 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.++.|.||+||||||+.+.+..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999973
No 242
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.24 E-value=0.0019 Score=55.67 Aligned_cols=22 Identities=14% Similarity=0.369 Sum_probs=19.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.-.++|+|++|+|||||++.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~ 37 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLA 37 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 3458999999999999999887
No 243
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.23 E-value=0.0022 Score=56.27 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRF 158 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ 158 (388)
|.+++|+|+.||||||+.+.|...+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 7799999999999999999998543
No 244
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.21 E-value=0.0019 Score=56.52 Aligned_cols=22 Identities=36% Similarity=0.366 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
..+++|+|++||||||+.+.|+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 245
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.21 E-value=0.00077 Score=67.28 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcCCCCCcceeehhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLF 178 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGpngSGKs~i~da~i~ 178 (388)
+.+++++||+||||||++..|+ ..+.+ ..+++.+.+++.+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA----~~l~~-~G~kVllv~~D~~ 136 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLA----YFYKK-RGYKVGLVAADVY 136 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHH----HHHHH-TTCCEEEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHH----HHHHH-cCCeEEEEecCcc
Confidence 6899999999999999999999 55533 3567777776653
No 246
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.21 E-value=0.0019 Score=55.80 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhhHHhhhhhc
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
+++|.|++||||||+.+.|+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999843
No 247
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.18 E-value=0.0022 Score=56.55 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
|.+++|.|+.||||||+.+.|+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 77999999999999999999984
No 248
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.18 E-value=0.0023 Score=55.76 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhhHHhhhhhc
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
+++|.|+.||||||+.+.|.-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999843
No 249
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.16 E-value=0.0022 Score=63.26 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+..++|||+||+|||||+++++
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Lt 43 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLT 43 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 6679999999999999999998
No 250
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.12 E-value=0.0025 Score=55.48 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.+++|+|+.||||||+.+.|+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999999983
No 251
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.11 E-value=0.0025 Score=55.14 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.+++|+|+.||||||+.+.++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999873
No 252
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.11 E-value=0.0015 Score=70.28 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 132 RYKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 132 ~~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
..++.++|+||||||||||+++|+.
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3477899999999999999999993
No 253
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.10 E-value=0.0026 Score=56.00 Aligned_cols=23 Identities=30% Similarity=0.241 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
|.+++|.|+.||||||+.+.|+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 67899999999999999999983
No 254
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.06 E-value=0.0017 Score=63.59 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+..++|+||+||||||+++.+.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~ 56 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLL 56 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHH
Confidence 6678999999999999999988
No 255
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.99 E-value=0.0031 Score=54.97 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.+++|+|+.||||||+.+.|+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999983
No 256
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.98 E-value=0.0032 Score=55.32 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
+++|.|++||||||+.+.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la 23 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999998
No 257
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.98 E-value=0.0034 Score=54.52 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChhhHHhhhhhc
Q psy14062 135 RFNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
.+++|+|++|||||||+..+...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999988843
No 258
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.97 E-value=0.0046 Score=55.98 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|+.++|+||+||||||++..+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 8999999999999999888665
No 259
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.96 E-value=0.0034 Score=59.27 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+..+.|.||+|||||||+++++.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHH
Confidence 67899999999999999999993
No 260
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.94 E-value=0.0046 Score=61.64 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhhHHhhhhhc
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
.++|+|+||||||||++.++..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999843
No 261
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.93 E-value=0.003 Score=54.37 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=16.8
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+.+++|.|++||||||+.+.|+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 6789999999999999999998
No 262
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.92 E-value=0.0035 Score=55.33 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
|.+++|+|+.||||||+.+.|+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 77999999999999999999984
No 263
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.92 E-value=0.0027 Score=57.51 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|++|+|||||++.|+
T Consensus 31 ~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47999999999999999888
No 264
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.89 E-value=0.0032 Score=61.43 Aligned_cols=20 Identities=30% Similarity=0.492 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
+++|+|++|||||||+++++
T Consensus 181 ~V~lvG~~naGKSTLln~L~ 200 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLT 200 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999998
No 265
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.84 E-value=0.0062 Score=53.82 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 133 YKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 133 ~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
.+..+.|.||.|+|||||++.++.
T Consensus 44 ~~~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 44 IHHAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp CCSEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999983
No 266
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.84 E-value=0.0036 Score=53.33 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChhhHHhhhh
Q psy14062 135 RFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.+++|+|+.||||||+.+.|+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 267
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.83 E-value=0.004 Score=53.88 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhhHHhhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+++|.|+.||||||+.+.++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999984
No 268
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.83 E-value=0.0035 Score=62.81 Aligned_cols=22 Identities=9% Similarity=0.110 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|++++|.||+|+|||||+..++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia 224 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIA 224 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999888
No 269
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.81 E-value=0.0041 Score=55.20 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
.++|+||.||||||+.+.|+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999999999997
No 270
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.79 E-value=0.004 Score=53.75 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+.+++|+|+.||||||+.+.++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 271
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.75 E-value=0.0021 Score=62.27 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|+++.|.||+|||||||+..++
T Consensus 61 G~iv~I~G~pGsGKTtLal~la 82 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAV 82 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999999988777
No 272
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.74 E-value=0.004 Score=55.71 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRF 158 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ 158 (388)
+.+++|+||+||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999998433
No 273
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.73 E-value=0.0044 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.+++|+|+.||||||+.+.|+.
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999983
No 274
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.72 E-value=0.0046 Score=55.55 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.+++|+||.||||||+.+.|+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999983
No 275
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.72 E-value=0.0033 Score=58.30 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
.++|+|++|||||||++.++
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~ 24 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALT 24 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57999999999999999998
No 276
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.70 E-value=0.0048 Score=54.15 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
..+++|+|+.||||||+.+.|+.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999873
No 277
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.69 E-value=0.0081 Score=53.50 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+..+.|.||+|+|||||++.++
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~ 73 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAAC 73 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 6789999999999999999998
No 278
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.69 E-value=0.0037 Score=63.14 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.1
Q ss_pred EEEEcCCCCChhhHHhhhhhc
Q psy14062 137 NAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 137 ~~iiGpnGsGKSTLl~~i~~~ 157 (388)
+.|+||+|||||||+++|+..
T Consensus 52 vLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999843
No 279
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.69 E-value=0.0049 Score=54.75 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
.++|+||.||||||+.+.|+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999999999997
No 280
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.68 E-value=0.0051 Score=52.16 Aligned_cols=21 Identities=33% Similarity=0.109 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhhHHhhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+++|.|+.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999983
No 281
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.66 E-value=0.006 Score=53.59 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+-+++|+|+.||||||+.+.|+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 6689999999999999999998
No 282
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.65 E-value=0.0077 Score=53.70 Aligned_cols=29 Identities=28% Similarity=0.244 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAII 162 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIi 162 (388)
|..++|+||+|||||||...++...+-++
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~~iI 62 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGHRLI 62 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTCEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCCeEE
Confidence 78899999999999999998885444444
No 283
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.0049 Score=53.21 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCChhhHHhhhh
Q psy14062 135 RFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~ 155 (388)
-.++|+|+.|||||||++.+.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999888
No 284
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.59 E-value=0.0055 Score=51.22 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 36899999999999999887
No 285
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.58 E-value=0.004 Score=58.70 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=17.8
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+-+++|.||+||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999983
No 286
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.56 E-value=0.0066 Score=54.18 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+-+++|+|+.||||||+.+.|+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 66899999999999999999983
No 287
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.55 E-value=0.006 Score=53.95 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
.-+++|+|+.||||||+.+.+.-
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999983
No 288
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.52 E-value=0.006 Score=55.89 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
.-+++|.|++||||||+.+.|..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999983
No 289
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.52 E-value=0.006 Score=54.84 Aligned_cols=21 Identities=38% Similarity=0.390 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhhHHhhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+++|+||.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999983
No 290
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.51 E-value=0.0043 Score=63.14 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+..++|.|++||||||+|++|.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li 188 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMI 188 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 7899999999999999999886
No 291
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.50 E-value=0.0061 Score=50.69 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999887
No 292
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.50 E-value=0.0076 Score=58.12 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCChhhHHhhhhhcccE
Q psy14062 135 RFNAIIGPNGSGKSNVIDSMLFRFNA 160 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~~~~ng 160 (388)
.+++|+||+|||||||.+.|+..+++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~ 33 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNG 33 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTE
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCC
Confidence 47899999999999999999966653
No 293
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.49 E-value=0.0068 Score=51.53 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++++|+|+.||||||+.+.|+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 294
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.48 E-value=0.0084 Score=57.22 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAI 161 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngI 161 (388)
+.+++|+||+|||||||...++..+++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~ 30 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGE 30 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEE
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccc
Confidence 5688999999999999999999766653
No 295
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.46 E-value=0.006 Score=50.60 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=18.0
Q ss_pred EEEEcCCCCChhhHHhhhh
Q psy14062 137 NAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 137 ~~iiGpnGsGKSTLl~~i~ 155 (388)
++++|+.|||||||++.+.
T Consensus 6 i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999887
No 296
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.43 E-value=0.0067 Score=50.49 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999887
No 297
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.43 E-value=0.0055 Score=64.52 Aligned_cols=33 Identities=30% Similarity=0.547 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEEEcC-CCCCcc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGP-NGSGKS 170 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngIiGp-ngSGKs 170 (388)
+..++|+|++|||||||++.|+ +..++ ...|++
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~----~~~~~~~~~G~V 42 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALL----YKTGAKERRGRV 42 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH----HHTTSSSSCCCG
T ss_pred CcEEEEECCCCChHHHHHHHHH----HhcCCCCcccee
Confidence 7899999999999999999998 54443 235654
No 298
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.43 E-value=0.0067 Score=50.37 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36899999999999999887
No 299
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.42 E-value=0.005 Score=52.54 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCChhhHHhhhh
Q psy14062 135 RFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~ 155 (388)
--++|+|++|||||||++.+.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999999887
No 300
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.40 E-value=0.0068 Score=51.08 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|+|||||++.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 37899999999999999887
No 301
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.40 E-value=0.007 Score=50.58 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=17.8
Q ss_pred EEEEcCCCCChhhHHhhhh
Q psy14062 137 NAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 137 ~~iiGpnGsGKSTLl~~i~ 155 (388)
++|+|+.|||||||++.+.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999887
No 302
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.40 E-value=0.0061 Score=50.97 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=17.9
Q ss_pred EEEEcCCCCChhhHHhhhh
Q psy14062 137 NAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 137 ~~iiGpnGsGKSTLl~~i~ 155 (388)
++|+|+.|+|||||++.+.
T Consensus 5 i~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEESTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 6899999999999999887
No 303
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.39 E-value=0.0069 Score=50.80 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 37899999999999999887
No 304
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.38 E-value=0.0071 Score=55.77 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.+++|+|++||||||+.+.++.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999983
No 305
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.38 E-value=0.0071 Score=50.44 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=17.9
Q ss_pred EEEEcCCCCChhhHHhhhh
Q psy14062 137 NAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 137 ~~iiGpnGsGKSTLl~~i~ 155 (388)
++|+|+.|||||||++.+.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999887
No 306
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.37 E-value=0.007 Score=51.27 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999887
No 307
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.37 E-value=0.0071 Score=50.64 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999887
No 308
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.36 E-value=0.0073 Score=50.66 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=17.9
Q ss_pred EEEEcCCCCChhhHHhhhh
Q psy14062 137 NAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 137 ~~iiGpnGsGKSTLl~~i~ 155 (388)
++|+|+.|||||||++.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999887
No 309
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.35 E-value=0.0066 Score=56.80 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.-+++|+|++||||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 310
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.35 E-value=0.0058 Score=59.42 Aligned_cols=19 Identities=37% Similarity=0.728 Sum_probs=17.7
Q ss_pred EEEEcCCCCChhhHHhhhh
Q psy14062 137 NAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 137 ~~iiGpnGsGKSTLl~~i~ 155 (388)
++|+|++|||||||++.|.
T Consensus 40 I~vvG~~g~GKSTLln~L~ 58 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLF 58 (361)
T ss_dssp EEECCCTTSCHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 6899999999999999976
No 311
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.35 E-value=0.0092 Score=57.16 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNA 160 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ng 160 (388)
..+++|+||+|||||||.+.|+..+++
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~ 31 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPC 31 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 457899999999999999999976654
No 312
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.35 E-value=0.0073 Score=50.55 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 37899999999999999887
No 313
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.35 E-value=0.0072 Score=51.10 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36999999999999999887
No 314
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.32 E-value=0.0071 Score=51.19 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36999999999999999887
No 315
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.31 E-value=0.0071 Score=50.62 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 37899999999999999887
No 316
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.31 E-value=0.0088 Score=52.40 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChhhHHhhhh
Q psy14062 135 RFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~ 155 (388)
..+.|.||+|+|||||+++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~ 75 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIA 75 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 678999999999999999998
No 317
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.28 E-value=0.0075 Score=56.25 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCChhhHHhhhh
Q psy14062 135 RFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~ 155 (388)
-.++|+|++|||||||++.++
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~ 24 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLIT 24 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999998
No 318
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.28 E-value=0.012 Score=53.64 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+-+++|+||.||||||+.+.|+-
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999973
No 319
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.27 E-value=0.0079 Score=50.90 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.-.++|+|+.|||||||++.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4568999999999999999887
No 320
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.26 E-value=0.012 Score=56.62 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNA 160 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ng 160 (388)
+.+++|+||.|||||||...|+..+++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~ 66 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPL 66 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCC
Confidence 678999999999999999999977664
No 321
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.20 E-value=0.011 Score=50.35 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+..+.|.||.|+|||||++.++.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 56789999999999999999884
No 322
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.20 E-value=0.0086 Score=56.02 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
..++.|+|++||||||+.+.|+.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999984
No 323
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.18 E-value=0.0081 Score=50.83 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~ 30 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFI 30 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999887
No 324
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.18 E-value=0.0089 Score=49.90 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999887
No 325
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.17 E-value=0.009 Score=50.10 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~ 28 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47999999999999999886
No 326
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.15 E-value=0.008 Score=51.86 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCChhhHHhhhh
Q psy14062 135 RFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~ 155 (388)
-.++|+|+.|||||||++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 458999999999999999887
No 327
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.15 E-value=0.0087 Score=57.33 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+..++|.||+|+|||||++.++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999983
No 328
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.14 E-value=0.012 Score=56.07 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccEE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAI 161 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ngI 161 (388)
+.+++|+||+|||||||...++..+++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~ 37 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVE 37 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEE
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCc
Confidence 5688999999999999999999776653
No 329
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.14 E-value=0.0092 Score=51.05 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~ 32 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYT 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47999999999999999887
No 330
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.12 E-value=0.0083 Score=51.50 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCChhhHHhhhh
Q psy14062 135 RFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~ 155 (388)
-.++|+|+.|||||||++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999887
No 331
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.12 E-value=0.0094 Score=51.47 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~ 46 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFT 46 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 37999999999999999887
No 332
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.11 E-value=0.0082 Score=58.07 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.-.++|+|++|+|||||++.++
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~ 188 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALT 188 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999999888
No 333
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.11 E-value=0.0084 Score=51.31 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=17.8
Q ss_pred EEEEcCCCCChhhHHhhhh
Q psy14062 137 NAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 137 ~~iiGpnGsGKSTLl~~i~ 155 (388)
++|+|+.|||||||++.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999887
No 334
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.11 E-value=0.01 Score=55.33 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRF 158 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ 158 (388)
+..+.|.||+|||||||+++++...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 5678999999999999999998543
No 335
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.10 E-value=0.0095 Score=50.84 Aligned_cols=19 Identities=26% Similarity=0.578 Sum_probs=18.0
Q ss_pred EEEEcCCCCChhhHHhhhh
Q psy14062 137 NAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 137 ~~iiGpnGsGKSTLl~~i~ 155 (388)
++|+|+.|||||||++.+.
T Consensus 7 i~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999887
No 336
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.10 E-value=0.0093 Score=52.99 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChhhHHhhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~ 156 (388)
.++|+||.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999983
No 337
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.09 E-value=0.009 Score=50.43 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999887
No 338
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.09 E-value=0.0099 Score=49.55 Aligned_cols=19 Identities=16% Similarity=0.447 Sum_probs=17.8
Q ss_pred EEEEcCCCCChhhHHhhhh
Q psy14062 137 NAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 137 ~~iiGpnGsGKSTLl~~i~ 155 (388)
++|+|+.|+|||||++.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~ 21 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLK 21 (164)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999886
No 339
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.09 E-value=0.0095 Score=51.48 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=17.6
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|++|||||||++.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37999999999999997665
No 340
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.07 E-value=0.0099 Score=50.27 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~ 27 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFA 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 37899999999999999887
No 341
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.06 E-value=0.01 Score=50.50 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999887
No 342
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.04 E-value=0.01 Score=51.08 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~ 28 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLT 28 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999888
No 343
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.03 E-value=0.013 Score=57.97 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.+++|+|++||||||+.+.++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999999873
No 344
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.02 E-value=0.23 Score=48.37 Aligned_cols=50 Identities=22% Similarity=0.400 Sum_probs=41.1
Q ss_pred cEEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhh
Q psy14062 74 RLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153 (388)
Q Consensus 74 ~l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~ 153 (388)
.|++..|.+.||+. ++++||++.+ | +++|+|||||||||||++
T Consensus 37 ~m~l~~L~i~nf~~--------------l~~v~l~~~~----------------------G-~~~lvG~NGaGKStLl~a 79 (415)
T 4aby_A 37 GPRLSRLEIRNLAT--------------ITQLELELGG----------------------G-FCAFTGETGAGKSIIVDA 79 (415)
T ss_dssp -CCCCEEEEEEETT--------------EEEEEEECCS----------------------S-EEEEEESHHHHHHHHTHH
T ss_pred ccEeeeehhccccc--------------eeeEEEecCC----------------------C-cEEEECCCCCCHHHHHHH
Confidence 46677788777742 2389999999 9 999999999999999999
Q ss_pred hhhcccEEEcC
Q psy14062 154 MLFRFNAIIGP 164 (388)
Q Consensus 154 i~~~~ngIiGp 164 (388)
|+ ++.|+
T Consensus 80 I~----~l~~~ 86 (415)
T 4aby_A 80 LG----LLLGG 86 (415)
T ss_dssp HH----HHTTC
T ss_pred HH----HHhCC
Confidence 99 77743
No 345
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.02 E-value=0.012 Score=56.71 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhhHHhhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~ 156 (388)
.+.|.||+|+|||||++.++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999983
No 346
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.98 E-value=0.011 Score=50.11 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~ 31 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFK 31 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 47999999999999999887
No 347
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.96 E-value=0.011 Score=49.83 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~ 36 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFT 36 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 348
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.94 E-value=0.011 Score=50.75 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 23 ki~vvG~~~~GKSsli~~l~ 42 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLI 42 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 47899999999999999887
No 349
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.93 E-value=0.011 Score=50.08 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~ 33 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFV 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 37999999999999999887
No 350
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.91 E-value=0.011 Score=51.61 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|++|+|||||++.++
T Consensus 25 ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999887
No 351
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.91 E-value=0.012 Score=50.23 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36999999999999999887
No 352
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.91 E-value=0.012 Score=56.58 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=22.8
Q ss_pred ccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 130 TNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 130 ~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
....|+++.|.||+|||||||+..++
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la 143 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLC 143 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34458999999999999999999887
No 353
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.88 E-value=0.01 Score=56.30 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
..+++|+|+.|||||||++.+.
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~ 31 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLL 31 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 4599999999999999999887
No 354
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.86 E-value=0.013 Score=52.30 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+-+++|+|+.||||||+.+.|+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999999984
No 355
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.86 E-value=0.011 Score=50.39 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 356
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.85 E-value=0.01 Score=54.31 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
.++|+|++|+|||||++.|.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~ 42 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSIL 42 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 47999999999999999887
No 357
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.85 E-value=0.013 Score=52.60 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
|.+++|.||.||||||+++.+.-
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999999874
No 358
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.85 E-value=0.012 Score=51.90 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCChhhHHhhhh
Q psy14062 135 RFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~ 155 (388)
-.++|+|+.|+|||||++.+.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 357999999999999999888
No 359
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.84 E-value=0.012 Score=55.57 Aligned_cols=21 Identities=38% Similarity=0.711 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChhhHHhhhh
Q psy14062 135 RFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.+++|+|++|+|||||++.+.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~ 28 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLL 28 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 479999999999999999988
No 360
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.84 E-value=0.012 Score=51.05 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFM 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 361
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.83 E-value=0.02 Score=54.34 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhhHHhhhhhc
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
.+.|.||+|+||||++++++..
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999844
No 362
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.83 E-value=0.013 Score=49.91 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|+|||||++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999887
No 363
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.82 E-value=0.012 Score=53.44 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=19.3
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRF 158 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ 158 (388)
|.+++|.||.||||||+++.|.-.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999987443
No 364
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.81 E-value=0.012 Score=50.56 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|+|||||++.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~ 28 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFA 28 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999887
No 365
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.81 E-value=0.012 Score=50.09 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|+|||||++.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 47899999999999999887
No 366
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.80 E-value=0.013 Score=50.33 Aligned_cols=20 Identities=25% Similarity=0.286 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|+|||||++.+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~ 35 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIY 35 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37999999999999999887
No 367
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.80 E-value=0.013 Score=50.48 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFA 37 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 37999999999999999887
No 368
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.79 E-value=0.018 Score=54.44 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+..+.|.||+|+|||||+++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45788999999999999999983
No 369
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.77 E-value=0.014 Score=53.39 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
|.+++|.|++||||||+++.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999998743
No 370
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.76 E-value=0.013 Score=50.37 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~ 43 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYA 43 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999887
No 371
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.71 E-value=0.013 Score=51.79 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
-..++|+|+.|||||||++.++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999998873
No 372
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.70 E-value=0.014 Score=49.92 Aligned_cols=20 Identities=15% Similarity=0.381 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 20 ~i~v~G~~~~GKssl~~~l~ 39 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFN 39 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47999999999999999887
No 373
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.70 E-value=0.014 Score=49.47 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|+|||||++.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~ 29 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYT 29 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999887
No 374
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.70 E-value=0.017 Score=52.01 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
+.+++|+|+.||||||+.+.|+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999843
No 375
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.69 E-value=0.012 Score=50.03 Aligned_cols=23 Identities=22% Similarity=0.549 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+..+.|.||.|+|||||++.++.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 55678999999999999999883
No 376
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.68 E-value=0.014 Score=50.79 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|+|||||++.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~ 29 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYV 29 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 47999999999999999887
No 377
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.68 E-value=0.013 Score=50.70 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 25 ki~vvG~~~~GKSsli~~l~ 44 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFV 44 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 37999999999999999887
No 378
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.67 E-value=0.013 Score=57.17 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=18.2
Q ss_pred EEEEcCCCCChhhHHhhhh
Q psy14062 137 NAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 137 ~~iiGpnGsGKSTLl~~i~ 155 (388)
++|+|++|||||||+++++
T Consensus 4 v~IVG~pnvGKSTL~n~L~ 22 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALT 22 (368)
T ss_dssp EEEECCSSSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999998
No 379
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.66 E-value=0.014 Score=54.59 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChhhHHhhhh
Q psy14062 135 RFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~ 155 (388)
..+.|+||+||||||+.++|+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la 68 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLA 68 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHH
Confidence 478999999999999999999
No 380
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.65 E-value=0.013 Score=50.49 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~ 29 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFV 29 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 47999999999999999887
No 381
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.65 E-value=0.017 Score=53.34 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRF 158 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ 158 (388)
+.-+.|.||+|||||||+++++..+
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 5668999999999999999998443
No 382
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.65 E-value=0.015 Score=51.58 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+-+++|+|+.||||||+.+.++
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~ 24 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVA 24 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999998
No 383
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.62 E-value=0.016 Score=52.08 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
|.|++|-|+.||||||+++.+.-
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999999874
No 384
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.62 E-value=0.015 Score=50.03 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~ 41 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFC 41 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37999999999999999887
No 385
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.61 E-value=0.015 Score=50.14 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=18.0
Q ss_pred EEEEcCCCCChhhHHhhhh
Q psy14062 137 NAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 137 ~~iiGpnGsGKSTLl~~i~ 155 (388)
++|+|+.|||||||++.+.
T Consensus 24 i~v~G~~~~GKSsli~~l~ 42 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFT 42 (191)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 7899999999999999887
No 386
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.59 E-value=0.013 Score=54.31 Aligned_cols=20 Identities=35% Similarity=0.655 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|++|+|||||++.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37999999999999999876
No 387
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.58 E-value=0.014 Score=51.33 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|++|||||||++.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~ 47 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFT 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 37999999999999999887
No 388
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.56 E-value=0.015 Score=50.78 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 26 ki~vvG~~~~GKSsli~~l~ 45 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFV 45 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 37999999999999999888
No 389
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.54 E-value=0.015 Score=50.29 Aligned_cols=19 Identities=32% Similarity=0.653 Sum_probs=17.9
Q ss_pred EEEEcCCCCChhhHHhhhh
Q psy14062 137 NAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 137 ~~iiGpnGsGKSTLl~~i~ 155 (388)
++|+|+.|+|||||++.+.
T Consensus 29 i~vvG~~~~GKSsLi~~l~ 47 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFT 47 (192)
T ss_dssp EEEECSTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999887
No 390
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.54 E-value=0.014 Score=50.27 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~ 42 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLK 42 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47999999999999999887
No 391
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.52 E-value=0.015 Score=50.16 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 25 ki~v~G~~~~GKSsli~~l~ 44 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYA 44 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHh
Confidence 37999999999999999887
No 392
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.51 E-value=0.016 Score=50.32 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~ 29 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYA 29 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37999999999999999887
No 393
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.48 E-value=0.03 Score=48.69 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhhHHhhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~ 156 (388)
.+.|.||.|+|||||++.++.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999884
No 394
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.48 E-value=0.016 Score=50.67 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 37899999999999999887
No 395
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.47 E-value=0.027 Score=46.82 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCChhhHHhhhh
Q psy14062 133 YKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 133 ~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.+.-+.|.||.|+|||++.++|.
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHH
Confidence 36678999999999999999998
No 396
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.47 E-value=0.017 Score=50.25 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|||++|+|||||++.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37999999999999999887
No 397
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.47 E-value=0.016 Score=49.77 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57999999999999999887
No 398
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.46 E-value=0.017 Score=49.86 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|+|||||++.+.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~ 44 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFS 44 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 47999999999999999887
No 399
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.45 E-value=0.022 Score=51.37 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRF 158 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ 158 (388)
..++.|+||.||||+|..+.|+-.+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998555
No 400
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.45 E-value=0.017 Score=50.03 Aligned_cols=20 Identities=40% Similarity=0.521 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~ 49 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFL 49 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999887
No 401
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.44 E-value=0.018 Score=57.56 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
...++|+|++|||||||++.|+.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45799999999999999999983
No 402
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.44 E-value=0.018 Score=49.45 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~ 36 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFT 36 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999887
No 403
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.42 E-value=0.017 Score=49.82 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCChhhHHhhhh
Q psy14062 135 RFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~ 155 (388)
-.++|+|+.|||||||++.+.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999999887
No 404
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.42 E-value=0.014 Score=53.86 Aligned_cols=21 Identities=19% Similarity=0.426 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhhHHhhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~ 156 (388)
.++|+|+.|||||||++.+..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g 23 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTN 23 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 478999999999999999983
No 405
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.42 E-value=0.018 Score=49.62 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|+|||||++.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~ 43 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIA 43 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37999999999999999887
No 406
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.41 E-value=0.018 Score=50.35 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~ 41 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFV 41 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999887
No 407
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.38 E-value=0.018 Score=50.05 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 30 ki~v~G~~~~GKSsli~~l~ 49 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLC 49 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 47999999999999999887
No 408
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.37 E-value=0.013 Score=49.94 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=9.0
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~ 29 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFS 29 (183)
T ss_dssp EEEEECCCCC----------
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999776
No 409
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.36 E-value=0.02 Score=49.91 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|.-++|.|+||+|||||...+.
T Consensus 16 G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 7789999999999999988765
No 410
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.35 E-value=0.017 Score=50.38 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|+|||||++.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~ 29 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFS 29 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47999999999999999887
No 411
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.33 E-value=0.019 Score=51.34 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCChhhHHhhhh
Q psy14062 135 RFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~ 155 (388)
-.++|+|+.|+|||||++.+.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~ 50 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVS 50 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999999887
No 412
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.32 E-value=0.014 Score=51.39 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~ 32 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVL 32 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999999776
No 413
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.30 E-value=0.018 Score=50.78 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|+|||||++.+.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~ 49 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFA 49 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999887
No 414
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.29 E-value=0.016 Score=49.54 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|+|||||++.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~ 42 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFS 42 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47999999999999999887
No 415
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.28 E-value=0.021 Score=51.47 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRF 158 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ 158 (388)
|.+++|.|+.||||||+++.+.-.+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999998544
No 416
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.28 E-value=0.02 Score=49.70 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|+|||||++.+.
T Consensus 22 ki~~~G~~~~GKssl~~~l~ 41 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYT 41 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999887
No 417
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.27 E-value=0.02 Score=49.40 Aligned_cols=20 Identities=40% Similarity=0.542 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|+|||||++.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~ 42 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFL 42 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 47999999999999998777
No 418
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.26 E-value=0.02 Score=51.90 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRF 158 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ 158 (388)
+.+++|.|+.||||||+.+.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 6789999999999999999998665
No 419
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.25 E-value=0.015 Score=49.34 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|+|||||++.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~ 28 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFL 28 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999887
No 420
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.24 E-value=0.018 Score=52.62 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCChhhHHhhhh
Q psy14062 135 RFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~ 155 (388)
-.++|+|+.|||||||++.|.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSIL 43 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999999887
No 421
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.24 E-value=0.02 Score=50.38 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~ 46 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYT 46 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 37999999999999999887
No 422
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.24 E-value=0.02 Score=52.66 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRF 158 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ 158 (388)
+.+++|.|+.||||||+.+.|+-.+
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 6799999999999999999998554
No 423
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.24 E-value=0.021 Score=56.28 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcccE
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRFNA 160 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ng 160 (388)
..+++|+||+|||||||...|+-.+++
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~ 28 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNG 28 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCC
Confidence 457899999999999999999866654
No 424
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.22 E-value=0.019 Score=54.73 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.8
Q ss_pred CCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 132 RYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 132 ~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
..|+++.|.||+|||||||+..++
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la 128 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLS 128 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHH
Confidence 348999999999999999999887
No 425
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.21 E-value=0.022 Score=51.53 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
|.+++|.|+.||||||+.+.+...
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999998743
No 426
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.21 E-value=0.019 Score=50.34 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCChhhHHhhhh
Q psy14062 135 RFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~ 155 (388)
--++|+|+.|||||||++.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~ 46 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFS 46 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHh
Confidence 358999999999999999887
No 427
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.21 E-value=0.019 Score=49.88 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999886
No 428
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.20 E-value=0.021 Score=50.71 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
...++|+|+.|||||||++.++.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999998874
No 429
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.19 E-value=0.011 Score=54.26 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=19.0
Q ss_pred EEEEcCCCCChhhHHhhhhhc
Q psy14062 137 NAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 137 ~~iiGpnGsGKSTLl~~i~~~ 157 (388)
+.|.||+|||||||+++++..
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999999843
No 430
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.16 E-value=0.02 Score=50.66 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|+|||||++.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~ 55 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFA 55 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 47899999999999999887
No 431
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.16 E-value=0.022 Score=50.07 Aligned_cols=20 Identities=25% Similarity=0.301 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
.++|+|+.|+|||||++.+.
T Consensus 9 ki~vvG~~~~GKTsli~~l~ 28 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLL 28 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999887
No 432
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.16 E-value=0.022 Score=54.18 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=23.7
Q ss_pred HhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 127 IIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 127 ~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+.+...-|+++.|.|++|+|||||+..++
T Consensus 61 ~lgGl~~G~l~li~G~pG~GKTtl~l~ia 89 (315)
T 3bh0_A 61 MTYGYKRRNFVLIAARPSMGKTAFALKQA 89 (315)
T ss_dssp HHSSBCTTCEEEEECCTTSSHHHHHHHHH
T ss_pred hcCCCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 33333449999999999999999998887
No 433
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.12 E-value=0.019 Score=53.00 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
.++|+|+.|||||||++.++
T Consensus 7 kI~lvG~~nvGKTsL~n~l~ 26 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALT 26 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999998
No 434
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.10 E-value=0.029 Score=50.86 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
..-+.|.||.|+||||++++++..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999843
No 435
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.10 E-value=0.021 Score=49.81 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~ 46 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFS 46 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 436
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.08 E-value=0.011 Score=52.26 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCChhhHHhhhh
Q psy14062 135 RFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~ 155 (388)
-.++|+|+.|||||||++.+.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~ 50 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLC 50 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHh
Confidence 468999999999999999887
No 437
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.01 E-value=0.022 Score=49.06 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|+|||||++.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~ 39 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYA 39 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47999999999999999887
No 438
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.96 E-value=0.019 Score=53.33 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhhHHhhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~ 156 (388)
.++|+|+.|||||||++.+..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g 25 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTG 25 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999983
No 439
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.96 E-value=0.019 Score=49.28 Aligned_cols=20 Identities=15% Similarity=0.380 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 24 ~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999886
No 440
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.95 E-value=0.023 Score=56.63 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+..+.|.||+|+|||||+++|+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999983
No 441
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.93 E-value=0.041 Score=53.10 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=24.5
Q ss_pred HHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhh
Q psy14062 123 YLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 123 ~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
.++.+........+++|+|+.|+|||||+..++.
T Consensus 68 ~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 68 LLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3444432223345789999999999999999873
No 442
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.91 E-value=0.024 Score=49.68 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~ 51 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYT 51 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 47999999999999998876
No 443
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.90 E-value=0.021 Score=53.64 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChhhHHhhhh
Q psy14062 135 RFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~ 155 (388)
-.++|+|+.|||||||++.|.
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~ 45 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIV 45 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 444
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.89 E-value=0.024 Score=49.17 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|+|||||++.+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~ 41 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVF 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999776
No 445
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=93.88 E-value=0.029 Score=54.61 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+-.++|||++|+|||||+++++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt 23 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALT 23 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999998
No 446
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.87 E-value=0.015 Score=58.01 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+.+++++||+||||||++..++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHH
Confidence 6799999999999999999888
No 447
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.81 E-value=0.027 Score=53.60 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|.-++|+|+||+||||+...+.
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~ 165 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELI 165 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHH
Confidence 7789999999999999998777
No 448
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.72 E-value=0.046 Score=52.27 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=26.6
Q ss_pred hHHHHHhcccCCCcEEEEEcCCCCChhhHHhhhhhcc
Q psy14062 122 EYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRF 158 (388)
Q Consensus 122 ~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~~~~ 158 (388)
..|++.......+..+.|.||.|+||||+++.++..+
T Consensus 26 ~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp HHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344443334445678999999999999999998544
No 449
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.70 E-value=0.018 Score=61.97 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+..++|+||+|||||||.++|+.
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~ 533 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHH
T ss_pred CceeEEECCCCCCHHHHHHHHHH
Confidence 67789999999999999999993
No 450
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.66 E-value=0.033 Score=49.68 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhhHHhhhhhcc
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLFRF 158 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~~~ 158 (388)
++.|+||.||||+|..+.|+-.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999998555
No 451
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.66 E-value=0.015 Score=50.50 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=4.1
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~ 41 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFT 41 (208)
T ss_dssp EEEEC---------------
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999776
No 452
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.64 E-value=0.028 Score=49.08 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|+|||||++.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~ 50 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFK 50 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 37999999999999999887
No 453
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.64 E-value=0.024 Score=50.15 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=17.6
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 17 ki~v~G~~~~GKSsli~~~~ 36 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHL 36 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37999999999999999843
No 454
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.60 E-value=0.031 Score=49.42 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|+|||||++.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~ 48 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLA 48 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 47999999999999999887
No 455
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.60 E-value=0.016 Score=50.45 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 35 ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSB
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999999776
No 456
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.57 E-value=0.035 Score=49.45 Aligned_cols=23 Identities=39% Similarity=0.719 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
|.|++|=|+-||||||+++.+.-
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~ 24 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYH 24 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 67999999999999999998874
No 457
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.49 E-value=0.033 Score=49.42 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|+|||||++.+.
T Consensus 15 ki~v~G~~~vGKSsli~~l~ 34 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFT 34 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 37999999999999999887
No 458
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.49 E-value=0.033 Score=49.63 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|||++|+|||||++.+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37999999999999999887
No 459
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.47 E-value=0.043 Score=50.38 Aligned_cols=20 Identities=30% Similarity=0.639 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
.++|+|+.|+|||||++.+.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~ 57 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLI 57 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47999999999999999888
No 460
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.39 E-value=0.035 Score=55.75 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|+..+|+||+|+|||||++.+.
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~ 172 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELI 172 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHH
Confidence 8899999999999999999887
No 461
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.38 E-value=0.034 Score=53.20 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
+..+.|.||.|+|||||++.++..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 668899999999999999998853
No 462
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.37 E-value=0.052 Score=48.59 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRF 158 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ 158 (388)
...+.|.||.|+||||+..+++..+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999888544
No 463
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.37 E-value=0.034 Score=48.71 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|+|||||++.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~ 30 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYT 30 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47999999999999999887
No 464
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.36 E-value=0.049 Score=50.21 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
.++++|+.|+|||||++.+.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~ 60 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSII 60 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999887
No 465
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.31 E-value=0.028 Score=52.22 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCChhhHHhhhh
Q psy14062 135 RFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~ 155 (388)
-.++|+|+.|||||||++.+.
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~ 47 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFV 47 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHH
Confidence 368999999999999999988
No 466
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.29 E-value=0.034 Score=51.44 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
.++++|.+|+|||||++.+.
T Consensus 101 ~v~~vG~~~vGKSslin~l~ 120 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLK 120 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred heEEeCCCCCCHHHHHHHHh
Confidence 68999999999999999888
No 467
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.18 E-value=0.035 Score=52.65 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|+++.|.||+|||||||...++
T Consensus 98 g~i~~i~G~~gsGKT~la~~la 119 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSC 119 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999999998877
No 468
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.12 E-value=0.046 Score=47.65 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=18.8
Q ss_pred CcEEEEEcCCCCChhhHH-hhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVI-DSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl-~~i~ 155 (388)
|.+..|.||.||||||++ +.+.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999997 4443
No 469
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.11 E-value=0.043 Score=51.66 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
|.+++|.||.|+|||||++.+...
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 589999999999999999988743
No 470
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.07 E-value=0.047 Score=45.26 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+.-+.|.||.|+|||++.++|.
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGC
T ss_pred CCcEEEECCCCccHHHHHHHHH
Confidence 5568899999999999999988
No 471
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.05 E-value=0.042 Score=50.52 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
..-+.|.||.|+|||||.++++..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 456789999999999999999843
No 472
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.98 E-value=1.3 Score=36.68 Aligned_cols=71 Identities=14% Similarity=0.172 Sum_probs=42.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14062 304 QLVETDLKALEPELRKAVNFLELENCVQRKHNEI--YQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESA 380 (388)
Q Consensus 304 i~vtH~l~~l~~~~d~~~~y~~~~~~~~~~~~~~--~~~~l~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~ 380 (388)
+-+.|++-.+.+..+. +..++.++...+ +..++...+.++++..++++++++++.+++.++..++.++.+.
T Consensus 64 LNiadEl~k~~~~~~~------L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~~ 136 (138)
T 3hnw_A 64 LNIADDYFKAKKMADS------LSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELNDS 136 (138)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666555554443 333333333332 3445556667777777777777777777777777777666543
No 473
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.87 E-value=0.079 Score=50.66 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
+..+.|.||.|+|||||+++++..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999843
No 474
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.86 E-value=0.043 Score=54.62 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
..+++|+|++||||||++..|+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999984
No 475
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.81 E-value=0.078 Score=50.15 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCChhhHHhhhhhcc
Q psy14062 135 RFNAIIGPNGSGKSNVIDSMLFRF 158 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~~~~ 158 (388)
..+.|.||.|+|||||++.++...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 468899999999999999998543
No 476
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.79 E-value=0.026 Score=48.44 Aligned_cols=24 Identities=63% Similarity=0.988 Sum_probs=21.5
Q ss_pred cEEEcCCCCCcceeehhhhhhcCc
Q psy14062 159 NAIIGPNGSGKSNVIDSMLFVFGY 182 (388)
Q Consensus 159 ngIiGpngSGKs~i~da~i~vlg~ 182 (388)
++|+||||||||++.+++.++++.
T Consensus 29 ~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 399999999999999999888764
No 477
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.77 E-value=0.052 Score=50.61 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
+.-+.|.||.|+||||+.++++.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999999998884
No 478
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.64 E-value=0.074 Score=48.56 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+..+.|.||.|+|||++.++|.
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHH
Confidence 5678899999999999999998
No 479
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=91.81 E-value=0.021 Score=49.74 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChhhHHhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~ 155 (388)
-++|+|+.|||||||++.+.
T Consensus 32 ki~v~G~~~~GKSsli~~l~ 51 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYT 51 (204)
Confidence 37899999999999998765
No 480
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.55 E-value=0.085 Score=50.74 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=23.6
Q ss_pred HhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 127 IIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 127 ~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+.+...-|+++.|.|++|+|||||+..++
T Consensus 39 ~~gGl~~G~LiiIaG~pG~GKTt~al~ia 67 (338)
T 4a1f_A 39 YTSGFNKGSLVIIGARPSMGKTSLMMNMV 67 (338)
T ss_dssp HHCSBCTTCEEEEEECTTSCHHHHHHHHH
T ss_pred HhcCCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 33333349999999999999999998887
No 481
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.52 E-value=0.055 Score=52.10 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
+.-+.|.||+||||||+.++|+..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999999943
No 482
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.49 E-value=0.062 Score=49.81 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
+.-+.|.||.|+||||++++++..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999843
No 483
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.41 E-value=0.067 Score=50.10 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
...+.|.||.|||||+|.++|+..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346777899999999999999943
No 484
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.36 E-value=0.1 Score=48.56 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhhHHhhhhhc
Q psy14062 137 NAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 137 ~~iiGpnGsGKSTLl~~i~~~ 157 (388)
+.|.||.|+||||+++.++..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 899999999999999998854
No 485
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.33 E-value=0.072 Score=49.91 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
...+.|.||.|+|||||++.++..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999999743
No 486
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.32 E-value=0.064 Score=48.00 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|+++.|.|+.|+|||||.--++
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999987655
No 487
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=92.32 E-value=0.083 Score=51.34 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
+..++++|++|+|||||++.|...
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhh
Confidence 567899999999999999999843
No 488
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.30 E-value=0.068 Score=50.79 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRF 158 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ 158 (388)
..-+.|.||.|||||+|.++++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 3568899999999999999999543
No 489
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=92.26 E-value=0.031 Score=53.57 Aligned_cols=45 Identities=38% Similarity=0.682 Sum_probs=38.0
Q ss_pred EEEEEEEeeceEEecCceeecCCCCcccccccccCCCCCcccccchhhHHHHHhcccCCCcEEEEEcCCCCChhhHHhhh
Q psy14062 75 LIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154 (388)
Q Consensus 75 l~i~~l~~~~fksy~~~~~l~~f~~~~l~~vsl~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i 154 (388)
|.+..|++.||++|.+.. + .|+ ..+++|+|||||||||++.+|
T Consensus 1 M~i~~l~l~nF~~~~~~~-i-~f~-----------------------------------~~~~~i~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 1 MKLERVTVKNFRSHSDTV-V-EFK-----------------------------------EGINLIIGQNGSGKSSLLDAI 43 (339)
T ss_dssp CEEEEEEEEEETTEEEEE-E-ECC-----------------------------------SEEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEEEEcccCccCeE-E-cCC-----------------------------------CCeEEEECCCCCCHHHHHHHH
Confidence 568899999999998643 3 343 679999999999999999999
Q ss_pred hh
Q psy14062 155 LF 156 (388)
Q Consensus 155 ~~ 156 (388)
++
T Consensus 44 ~~ 45 (339)
T 3qkt_A 44 LV 45 (339)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 490
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.24 E-value=0.06 Score=51.01 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
..-+.|.||.|||||+|.++++..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 345889999999999999999843
No 491
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.24 E-value=0.093 Score=52.19 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=25.1
Q ss_pred HHHHhcccCCCcEEEEEcCCCCChhhHHhhhh
Q psy14062 124 LEEIIGTNRYKRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 124 ~~~~~~~~~~g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|-.+.+...-|+++.|.|++|+|||||+..++
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia 221 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIA 221 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 33344334449999999999999999998887
No 492
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.22 E-value=0.072 Score=50.36 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
+.-+.|.||.|+|||+|+++|+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia 173 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMA 173 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 5678899999999999999998
No 493
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.10 E-value=0.067 Score=48.60 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhhHHhhhhh
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~ 156 (388)
..+|+||.||||||+.+.|+-
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHH
Confidence 579999999999999999874
No 494
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.10 E-value=0.082 Score=50.91 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhcc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFRF 158 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~~ 158 (388)
..-+.|.||.|||||||+++|+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 5678999999999999999998443
No 495
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.07 E-value=0.076 Score=50.91 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhhHHhhhhhc
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
+..+.|.||.|+|||||++.++..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 557999999999999999999843
No 496
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.00 E-value=0.071 Score=51.65 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChhhHHhhhh
Q psy14062 134 KRFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 134 g~~~~iiGpnGsGKSTLl~~i~ 155 (388)
|+++.|.||+|||||||...++
T Consensus 63 G~ii~I~G~pGsGKTtLal~la 84 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVI 84 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999999998776
No 497
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.97 E-value=0.095 Score=52.33 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhhHHhhhhhcc
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLFRF 158 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~~~ 158 (388)
.+.|.||+|+|||||.++|+...
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 48899999999999999999554
No 498
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.92 E-value=0.12 Score=48.69 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChhhHHhhhhh
Q psy14062 135 RFNAIIGPNGSGKSNVIDSMLF 156 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~~ 156 (388)
.++.|.||.|+|||||++.+..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 6999999999999999998873
No 499
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=91.91 E-value=0.069 Score=51.87 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCChhhHHhhhh
Q psy14062 135 RFNAIIGPNGSGKSNVIDSML 155 (388)
Q Consensus 135 ~~~~iiGpnGsGKSTLl~~i~ 155 (388)
.-+.|+|.+|||||||++-+.
T Consensus 34 ~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 34 VKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 357899999999999999886
No 500
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=91.84 E-value=0.11 Score=48.32 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhhHHhhhhhc
Q psy14062 136 FNAIIGPNGSGKSNVIDSMLFR 157 (388)
Q Consensus 136 ~~~iiGpnGsGKSTLl~~i~~~ 157 (388)
.+.|.||.|+||||+++.++..
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHH
Confidence 3899999999999999999843
Done!