Your job contains 1 sequence.
>psy14062
MIIDGAQGGPNQDTLVTPKRAKKTQEQDDGNVQTNDKSLDEHDLDLDDEGGTYVGEVYIP
PIAPVCFADPTGPRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGL
LEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVF
GYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAF
YDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKL
TRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQME
QELTANLESIKKCTDEMESAKTELKTVE
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14062
(388 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1NDN4 - symbol:SMC4 "Structural maintenance of... 414 1.8e-59 3
UNIPROTKB|F1P3C6 - symbol:SMC4 "Structural maintenance of... 414 2.0e-59 3
UNIPROTKB|E2RCX4 - symbol:SMC4 "Structural maintenance of... 417 1.1e-50 3
UNIPROTKB|Q9ERA5 - symbol:SMC4 "Structural maintenance of... 412 3.6e-49 3
MGI|MGI:1917349 - symbol:Smc4 "structural maintenance of ... 408 7.0e-49 3
UNIPROTKB|F1MAD9 - symbol:Smc4 "Structural maintenance of... 409 4.8e-48 3
RGD|1306680 - symbol:Smc4 "structural maintenance of chro... 409 2.0e-47 2
UNIPROTKB|P50532 - symbol:smc4 "Structural maintenance of... 420 1.6e-45 2
UNIPROTKB|C9J9E4 - symbol:SMC4 "Structural maintenance of... 401 1.4e-44 2
UNIPROTKB|C9JR83 - symbol:SMC4 "Structural maintenance of... 410 8.5e-43 2
UNIPROTKB|E9PD53 - symbol:SMC4 "Structural maintenance of... 419 1.2e-41 2
UNIPROTKB|Q9NTJ3 - symbol:SMC4 "Structural maintenance of... 410 1.2e-40 2
UNIPROTKB|E1BMZ9 - symbol:SMC4 "Structural maintenance of... 418 2.3e-40 2
UNIPROTKB|F1SH51 - symbol:SMC4 "Structural maintenance of... 412 1.6e-39 2
ZFIN|ZDB-GENE-020419-21 - symbol:smc4 "structural mainten... 404 7.2e-39 2
POMBASE|SPBC146.03c - symbol:cut3 "condensin complex subu... 300 2.7e-36 3
ASPGD|ASPL0000075987 - symbol:AN4597 species:162425 "Emer... 363 3.2e-34 2
FB|FBgn0015391 - symbol:glu "gluon" species:7227 "Drosoph... 381 8.3e-34 1
CGD|CAL0003745 - symbol:SMC4 species:5476 "Candida albica... 323 6.7e-33 2
UNIPROTKB|C9JJ64 - symbol:SMC4 "Structural maintenance of... 266 4.3e-32 2
DICTYBASE|DDB_G0286403 - symbol:smc4 "structural maintena... 320 1.1e-31 2
WB|WBGene00004874 - symbol:smc-4 species:6239 "Caenorhabd... 318 4.5e-31 2
UNIPROTKB|Q20060 - symbol:smc-4 "Structural maintenance o... 318 4.5e-31 2
SGD|S000004076 - symbol:SMC4 "Subunit of the condensin co... 344 5.4e-31 2
UNIPROTKB|C9J578 - symbol:SMC4 "Structural maintenance of... 322 5.6e-29 1
UNIPROTKB|C9IYK2 - symbol:SMC4 "Structural maintenance of... 238 9.5e-29 2
UNIPROTKB|C9JWF0 - symbol:SMC4 "Structural maintenance of... 237 1.3e-28 2
UNIPROTKB|C9JVD8 - symbol:SMC4 "Structural maintenance of... 317 1.9e-28 1
WB|WBGene00001086 - symbol:dpy-27 species:6239 "Caenorhab... 259 1.6e-21 2
UNIPROTKB|P48996 - symbol:dpy-27 "Chromosome condensation... 259 1.6e-21 2
FB|FBgn0040283 - symbol:SMC1 "SMC1" species:7227 "Drosoph... 225 2.1e-15 1
GENEDB_PFALCIPARUM|MAL13P1.96 - symbol:MAL13P1.96 "chromo... 217 1.7e-14 1
UNIPROTKB|Q8IED2 - symbol:MAL13P1.96 "Structural maintena... 217 1.7e-14 1
GENEDB_PFALCIPARUM|PF11_0317 - symbol:PF11_0317 "structur... 163 8.8e-13 2
UNIPROTKB|Q8II57 - symbol:PF11_0317 "Structural maintenan... 163 8.8e-13 2
TAIR|locus:2167973 - symbol:SMC2 "AT5G62410" species:3702... 167 1.3e-12 3
RGD|1308791 - symbol:Smc1b "structural maintenance of chr... 152 1.5e-12 2
MGI|MGI:2154049 - symbol:Smc1b "structural maintenance of... 150 2.5e-12 2
UNIPROTKB|Q90988 - symbol:SMC2 "Structural maintenance of... 189 2.3e-11 1
SGD|S000001927 - symbol:SMC2 "Subunit of the condensin co... 188 3.0e-11 1
UNIPROTKB|F1SP73 - symbol:F1SP73 "Uncharacterized protein... 171 3.2e-11 2
UNIPROTKB|F6V533 - symbol:SMC1B "Uncharacterized protein"... 140 4.7e-11 2
UNIPROTKB|E2QRT5 - symbol:SMC1B "Structural maintenance o... 140 6.5e-11 2
UNIPROTKB|F1NX72 - symbol:SMC1B "Structural maintenance o... 135 7.0e-11 2
UNIPROTKB|F1NX73 - symbol:SMC1B "Structural maintenance o... 135 7.1e-11 2
UNIPROTKB|E1C614 - symbol:E1C614 "Uncharacterized protein... 183 1.0e-10 1
UNIPROTKB|E1C610 - symbol:E1C610 "Structural maintenance ... 183 1.1e-10 1
UNIPROTKB|E1C612 - symbol:E1C612 "Uncharacterized protein... 183 1.1e-10 1
UNIPROTKB|Q8NDV3 - symbol:SMC1B "Structural maintenance o... 138 1.1e-10 2
UNIPROTKB|E1C782 - symbol:E1C782 "Uncharacterized protein... 183 1.1e-10 1
UNIPROTKB|E2R7R8 - symbol:SMC2 "Structural maintenance of... 183 1.1e-10 1
UNIPROTKB|E1C611 - symbol:E1C611 "Structural maintenance ... 183 1.1e-10 1
UNIPROTKB|O95347 - symbol:SMC2 "Structural maintenance of... 183 1.1e-10 1
MGI|MGI:106067 - symbol:Smc2 "structural maintenance of c... 182 1.4e-10 1
UNIPROTKB|G8JLG1 - symbol:SMC1A "Structural maintenance o... 177 1.5e-10 1
UNIPROTKB|D4A5Q2 - symbol:Smc2 "Structural maintenance of... 181 1.8e-10 1
RGD|1305227 - symbol:Smc2 "structural maintenance of chro... 181 1.9e-10 1
UNIPROTKB|F1SRP0 - symbol:SMC2 "Structural maintenance of... 180 2.3e-10 1
DICTYBASE|DDB_G0284499 - symbol:smc2 "structural maintena... 166 3.1e-10 2
UNIPROTKB|O93308 - symbol:smc1a "Structural maintenance o... 177 5.3e-10 1
UNIPROTKB|G3X7C0 - symbol:SMC1A "Structural maintenance o... 175 8.7e-10 1
UNIPROTKB|O97593 - symbol:SMC1A "Structural maintenance o... 175 8.7e-10 1
UNIPROTKB|E2QV07 - symbol:SMC1A "Structural maintenance o... 175 8.7e-10 1
UNIPROTKB|Q14683 - symbol:SMC1A "Structural maintenance o... 175 8.7e-10 1
UNIPROTKB|F2Z5A8 - symbol:LOC100523938 "Structural mainte... 175 8.7e-10 1
MGI|MGI:1344345 - symbol:Smc1a "structural maintenance of... 175 8.7e-10 1
UNIPROTKB|I3LMC6 - symbol:LOC100523938 "Structural mainte... 175 8.8e-10 1
UNIPROTKB|F1MY41 - symbol:SMC2 "Structural maintenance of... 182 1.2e-09 2
POMBASE|SPBP4H10.06c - symbol:cut14 "condensin complex su... 173 1.4e-09 1
CGD|CAL0000340 - symbol:SMC2 species:5476 "Candida albica... 180 1.5e-09 2
RGD|61991 - symbol:Smc1a "structural maintenance of chrom... 172 1.9e-09 1
UNIPROTKB|Q9Z1M9 - symbol:Smc1a "Structural maintenance o... 172 1.9e-09 1
ZFIN|ZDB-GENE-040426-57 - symbol:smc1al "structural maint... 168 2.2e-09 2
ASPGD|ASPL0000004872 - symbol:smcB species:162425 "Emeric... 169 3.8e-09 1
UNIPROTKB|Q97QG7 - symbol:smc "Chromosome partition prote... 169 3.8e-09 1
WB|WBGene00001860 - symbol:him-1 species:6239 "Caenorhabd... 162 4.2e-09 2
DICTYBASE|DDB_G0291752 - symbol:smc1 "structural maintena... 166 5.9e-09 2
WB|WBGene00003367 - symbol:mix-1 species:6239 "Caenorhabd... 136 6.4e-09 2
UNIPROTKB|Q09591 - symbol:mix-1 "Mitotic chromosome and X... 136 6.4e-09 2
UNIPROTKB|P51834 - symbol:smc "Chromosome partition prote... 138 1.1e-08 2
TAIR|locus:2079107 - symbol:ATSMC2 "AT3G47460" species:37... 168 1.3e-08 2
ZFIN|ZDB-GENE-090506-9 - symbol:smc1a "structural mainten... 159 2.2e-08 2
ZFIN|ZDB-GENE-030131-105 - symbol:smc2 "structural mainte... 161 3.1e-08 1
UNIPROTKB|Q10970 - symbol:smc "Chromosome partition prote... 158 6.4e-08 1
TIGR_CMR|CHY_1443 - symbol:CHY_1443 "chromosome segregati... 141 7.1e-08 2
UNIPROTKB|Q81ZL2 - symbol:smc "Chromosome partition prote... 153 2.2e-07 1
TIGR_CMR|CBU_0540 - symbol:CBU_0540 "SMC family protein" ... 153 2.2e-07 1
TIGR_CMR|SO_2898 - symbol:SO_2898 "SMC family protein" sp... 152 2.8e-07 1
SGD|S000001886 - symbol:SMC1 "Subunit of the multiprotein... 152 3.0e-07 1
FB|FBgn0027783 - symbol:SMC2 "SMC2" species:7227 "Drosoph... 151 3.7e-07 1
CGD|CAL0001080 - symbol:SMC1 species:5476 "Candida albica... 150 5.0e-07 1
UNIPROTKB|Q9X0R4 - symbol:smc "Chromosome partition prote... 124 8.6e-07 3
WB|WBGene00004873 - symbol:smc-3 species:6239 "Caenorhabd... 125 2.9e-06 2
TIGR_CMR|GSU_1130 - symbol:GSU_1130 "chromosome segregati... 129 3.7e-06 2
UNIPROTKB|F1N6C8 - symbol:SMC1B "Structural maintenance o... 143 4.2e-06 2
UNIPROTKB|F1SM58 - symbol:F1SM58 "Structural maintenance ... 133 8.2e-06 3
TAIR|locus:2045159 - symbol:TTN7 "AT2G27170" species:3702... 136 1.7e-05 1
SGD|S000003610 - symbol:SMC3 "Subunit of the multiprotein... 134 2.9e-05 1
UNIPROTKB|Q71YL3 - symbol:smC "Chromosome partition prote... 133 3.5e-05 1
TIGR_CMR|BA_3986 - symbol:BA_3986 "chromosome segregation... 131 5.8e-05 1
WARNING: Descriptions of 7 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|F1NDN4 [details] [associations]
symbol:SMC4 "Structural maintenance of chromosomes protein"
species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0007062 "sister chromatid
cohesion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000796 "condensin complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0010032 "meiotic chromosome
condensation" evidence=IEA] [GO:0045132 "meiotic chromosome
segregation" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0051383 "kinetochore organization"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0006281
GO:GO:0006310 GO:GO:0007076 GO:GO:0000796 GO:GO:0007062
GeneTree:ENSGT00580000081617 SUPFAM:SSF75553 EMBL:AADN02021066
IPI:IPI00684483 Ensembl:ENSGALT00000032997 ArrayExpress:F1NDN4
Uniprot:F1NDN4
Length = 1274
Score = 414 (150.8 bits), Expect = 1.8e-59, Sum P(3) = 1.8e-59
Identities = 79/142 (55%), Positives = 106/142 (74%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF+ IIGPNGSGKSNVID+MLFVFGYRA KIR+ KLSVL+H S++ + CSV +HF +
Sbjct: 78 RFSCIIGPNGSGKSNVIDAMLFVFGYRAQKIRSKKLSVLIHNSEEHTDIQSCSVEVHFQK 137
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
IIDK ++YE+IP ++ ++RTA+ DNSS Y +NGKK FK+V +LR HG+DL +NRFL
Sbjct: 138 IIDKEGDDYEVIPNSNFCVSRTAYRDNSSVYHINGKKSTFKDVGILLRSHGIDLDHNRFL 197
Query: 277 ILQEPIAKMEVLYGKYDEERTE 298
ILQ + ++ ++ K E E
Sbjct: 198 ILQGEVEQIAMMKPKGQTEHDE 219
Score = 161 (61.7 bits), Expect = 1.8e-59, Sum P(3) = 1.8e-59
Identities = 40/111 (36%), Positives = 61/111 (54%)
Query: 278 LQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEI 337
L+ PI + +E+R EKL RV++VE + ALE + KA+ FL LEN + ++ N I
Sbjct: 234 LRAPIQTLCRRVETLNEQRGEKLNRVKMVEKEKDALEGDKNKAIEFLSLENKMFKEKNHI 293
Query: 338 YQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
QY Y K + + ET+ + +++E E K DEM+S LK +E
Sbjct: 294 CQYYIYDLQKRINDLETQKENIQKETKDINEKSSKLADEMKSKSKALKDLE 344
Score = 120 (47.3 bits), Expect = 6.5e-22, Sum P(3) = 6.5e-22
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYK 134
GEVEQI+MM PKG+TE + G+LEYLE++IG+ R +
Sbjct: 201 GEVEQIAMMKPKGQTEHDEGMLEYLEDLIGSARLR 235
Score = 111 (44.1 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 23/34 (67%), Positives = 28/34 (82%)
Query: 125 EEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRF 158
E+ +G +KRF+ IIGPNGSGKSNVID+MLF F
Sbjct: 69 EQTLGPF-HKRFSCIIGPNGSGKSNVIDAMLFVF 101
Score = 102 (41.0 bits), Expect = 1.8e-59, Sum P(3) = 1.8e-59
Identities = 22/39 (56%), Positives = 25/39 (64%)
Query: 60 PPIAPVCFADPTGPRLIITKIVAFNFKSYAGYVTLGPFN 98
PP P + PRL+IT IV NFKSYAG TLGPF+
Sbjct: 38 PPPPPAMTNEAGAPRLMITHIVNQNFKSYAGEQTLGPFH 76
Score = 59 (25.8 bits), Expect = 8.3e-49, Sum P(3) = 8.3e-49
Identities = 25/111 (22%), Positives = 54/111 (48%)
Query: 278 LQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLE-LENCVQRKHNE 336
L++ I K+ VL EE K T++ L D+K E +L+ A + + LE +Q+ +
Sbjct: 343 LEKKIDKITVLI----EENKNKFTQLDL--QDVKVRE-KLKHAKSKAKKLEKQLQKDKEK 395
Query: 337 IYQYERYVNM--KNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELK 385
+ + + + KN+ + +K + +E+ E +K+ ++ E++
Sbjct: 396 VEELKNVPSSSEKNISDATSKKELLEKAKDKEEEKLKQVMSSLQEETREIQ 446
Score = 53 (23.7 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 29/139 (20%), Positives = 61/139 (43%)
Query: 257 KEVAKVLRDHGVDLLNNRFLILQEPIAKMEV----LYGKYDEERTEKLTRVQLVETDLKA 312
KE+ KVL + D R + E KME L+ + KL + Q + D
Sbjct: 828 KELEKVLNSYKKDY--ER---VSEQAGKMESEVKRLHNLIIDFNNRKL-KTQQDKVD--K 879
Query: 313 LEPELRKAVNFL-ELENCVQRKHNEIYQYERYV--NMKNLGEHETKVQQMEQELTANLES 369
+ E+ + + + + + ++ H + + E V K +G++E +++ + +ELT +
Sbjct: 880 INQEIDECTSAITKAQVAIKTAHRNLKKSEDSVLRTEKEIGDNEKEIKDLTEELTTLEDK 939
Query: 370 IKKCTDEMESAKTELKTVE 388
+ ++ A+ L V+
Sbjct: 940 ATEVLNDCRQAEEALPAVQ 958
Score = 48 (22.0 bits), Expect = 1.2e-47, Sum P(3) = 1.2e-47
Identities = 28/122 (22%), Positives = 50/122 (40%)
Query: 278 LQEPIAKMEVLYGKYDEERTEKLTRVQL--------VETDLKALEPELR---KAVNFLEL 326
+ + +K E+L D+E EKL +V ++ + + E EL K VN
Sbjct: 410 ISDATSKKELLEKAKDKEE-EKLKQVMSSLQEETREIQKEKEGKEKELMEFCKTVNDARS 468
Query: 327 ENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKT 386
+ V + +IY + L E + + + L +IK ++ +A+ ELK
Sbjct: 469 KMDVAQAELDIYLTRYNTAVSQLDEAKEALMTTSETLKQRKAAIKDIDIKLPTAEQELKE 528
Query: 387 VE 388
E
Sbjct: 529 KE 530
Score = 42 (19.8 bits), Expect = 4.9e-47, Sum P(3) = 4.9e-47
Identities = 25/106 (23%), Positives = 47/106 (44%)
Query: 284 KMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLEL-ENCVQRKHNEIYQYER 342
K+E K D+E+ E+L V + E + A + EL E ++ ++ Q
Sbjct: 384 KLEKQLQK-DKEKVEELKNVP------SSSEKNISDATSKKELLEKAKDKEEEKLKQV-- 434
Query: 343 YVNMKNLGEHETKVQQ----MEQELTANLESIKKCTDEMESAKTEL 384
M +L E ++Q+ E+EL +++ +M+ A+ EL
Sbjct: 435 ---MSSLQEETREIQKEKEGKEKELMEFCKTVNDARSKMDVAQAEL 477
Score = 37 (18.1 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 217 IIDKPNEEYEIIPGTDLE 234
I DKP EE ++ +LE
Sbjct: 1018 IEDKPPEELPVLSQEELE 1035
>UNIPROTKB|F1P3C6 [details] [associations]
symbol:SMC4 "Structural maintenance of chromosomes protein"
species:9031 "Gallus gallus" [GO:0007062 "sister chromatid
cohesion" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000796 "condensin complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0010032 "meiotic chromosome
condensation" evidence=IEA] [GO:0045132 "meiotic chromosome
segregation" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0051383 "kinetochore organization"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0006281
GO:GO:0006310 GO:GO:0007076 GO:GO:0000796 GO:GO:0007062
GeneTree:ENSGT00580000081617 SUPFAM:SSF75553 OMA:IAIEFLT
EMBL:AADN02021066 IPI:IPI00573837 Ensembl:ENSGALT00000015551
ArrayExpress:F1P3C6 Uniprot:F1P3C6
Length = 1300
Score = 414 (150.8 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
Identities = 79/142 (55%), Positives = 106/142 (74%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF+ IIGPNGSGKSNVID+MLFVFGYRA KIR+ KLSVL+H S++ + CSV +HF +
Sbjct: 104 RFSCIIGPNGSGKSNVIDAMLFVFGYRAQKIRSKKLSVLIHNSEEHTDIQSCSVEVHFQK 163
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
IIDK ++YE+IP ++ ++RTA+ DNSS Y +NGKK FK+V +LR HG+DL +NRFL
Sbjct: 164 IIDKEGDDYEVIPNSNFCVSRTAYRDNSSVYHINGKKSTFKDVGILLRSHGIDLDHNRFL 223
Query: 277 ILQEPIAKMEVLYGKYDEERTE 298
ILQ + ++ ++ K E E
Sbjct: 224 ILQGEVEQIAMMKPKGQTEHDE 245
Score = 161 (61.7 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
Identities = 40/111 (36%), Positives = 61/111 (54%)
Query: 278 LQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEI 337
L+ PI + +E+R EKL RV++VE + ALE + KA+ FL LEN + ++ N I
Sbjct: 260 LRAPIQTLCRRVETLNEQRGEKLNRVKMVEKEKDALEGDKNKAIEFLSLENKMFKEKNHI 319
Query: 338 YQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
QY Y K + + ET+ + +++E E K DEM+S LK +E
Sbjct: 320 CQYYIYDLQKRINDLETQKENIQKETKDINEKSSKLADEMKSKSKALKDLE 370
Score = 120 (47.3 bits), Expect = 6.9e-22, Sum P(3) = 6.9e-22
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYK 134
GEVEQI+MM PKG+TE + G+LEYLE++IG+ R +
Sbjct: 227 GEVEQIAMMKPKGQTEHDEGMLEYLEDLIGSARLR 261
Score = 111 (44.1 bits), Expect = 7.3e-15, Sum P(2) = 7.3e-15
Identities = 23/34 (67%), Positives = 28/34 (82%)
Query: 125 EEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRF 158
E+ +G +KRF+ IIGPNGSGKSNVID+MLF F
Sbjct: 95 EQTLGPF-HKRFSCIIGPNGSGKSNVIDAMLFVF 127
Score = 102 (41.0 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
Identities = 22/39 (56%), Positives = 25/39 (64%)
Query: 60 PPIAPVCFADPTGPRLIITKIVAFNFKSYAGYVTLGPFN 98
PP P + PRL+IT IV NFKSYAG TLGPF+
Sbjct: 64 PPPPPAMTNEAGAPRLMITHIVNQNFKSYAGEQTLGPFH 102
Score = 59 (25.8 bits), Expect = 9.2e-49, Sum P(3) = 9.2e-49
Identities = 25/111 (22%), Positives = 54/111 (48%)
Query: 278 LQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLE-LENCVQRKHNE 336
L++ I K+ VL EE K T++ L D+K E +L+ A + + LE +Q+ +
Sbjct: 369 LEKKIDKITVLI----EENKNKFTQLDL--QDVKVRE-KLKHAKSKAKKLEKQLQKDKEK 421
Query: 337 IYQYERYVNM--KNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELK 385
+ + + + KN+ + +K + +E+ E +K+ ++ E++
Sbjct: 422 VEELKNVPSSSEKNISDATSKKELLEKAKDKEEEKLKQVMSSLQEETREIQ 472
Score = 53 (23.7 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 29/139 (20%), Positives = 61/139 (43%)
Query: 257 KEVAKVLRDHGVDLLNNRFLILQEPIAKMEV----LYGKYDEERTEKLTRVQLVETDLKA 312
KE+ KVL + D R + E KME L+ + KL + Q + D
Sbjct: 854 KELEKVLNSYKKDY--ER---VSEQAGKMESEVKRLHNLIIDFNNRKL-KTQQDKVD--K 905
Query: 313 LEPELRKAVNFL-ELENCVQRKHNEIYQYERYV--NMKNLGEHETKVQQMEQELTANLES 369
+ E+ + + + + + ++ H + + E V K +G++E +++ + +ELT +
Sbjct: 906 INQEIDECTSAITKAQVAIKTAHRNLKKSEDSVLRTEKEIGDNEKEIKDLTEELTTLEDK 965
Query: 370 IKKCTDEMESAKTELKTVE 388
+ ++ A+ L V+
Sbjct: 966 ATEVLNDCRQAEEALPAVQ 984
Score = 48 (22.0 bits), Expect = 1.3e-47, Sum P(3) = 1.3e-47
Identities = 28/122 (22%), Positives = 50/122 (40%)
Query: 278 LQEPIAKMEVLYGKYDEERTEKLTRVQL--------VETDLKALEPELR---KAVNFLEL 326
+ + +K E+L D+E EKL +V ++ + + E EL K VN
Sbjct: 436 ISDATSKKELLEKAKDKEE-EKLKQVMSSLQEETREIQKEKEGKEKELMEFCKTVNDARS 494
Query: 327 ENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKT 386
+ V + +IY + L E + + + L +IK ++ +A+ ELK
Sbjct: 495 KMDVAQAELDIYLTRYNTAVSQLDEAKEALMTTSETLKQRKAAIKDIDIKLPTAEQELKE 554
Query: 387 VE 388
E
Sbjct: 555 KE 556
Score = 42 (19.8 bits), Expect = 5.5e-47, Sum P(3) = 5.5e-47
Identities = 25/106 (23%), Positives = 47/106 (44%)
Query: 284 KMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLEL-ENCVQRKHNEIYQYER 342
K+E K D+E+ E+L V + E + A + EL E ++ ++ Q
Sbjct: 410 KLEKQLQK-DKEKVEELKNVP------SSSEKNISDATSKKELLEKAKDKEEEKLKQV-- 460
Query: 343 YVNMKNLGEHETKVQQ----MEQELTANLESIKKCTDEMESAKTEL 384
M +L E ++Q+ E+EL +++ +M+ A+ EL
Sbjct: 461 ---MSSLQEETREIQKEKEGKEKELMEFCKTVNDARSKMDVAQAEL 503
Score = 37 (18.1 bits), Expect = 8.4e-09, Sum P(3) = 8.4e-09
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 217 IIDKPNEEYEIIPGTDLE 234
I DKP EE ++ +LE
Sbjct: 1044 IEDKPPEELPVLSQEELE 1061
>UNIPROTKB|E2RCX4 [details] [associations]
symbol:SMC4 "Structural maintenance of chromosomes protein"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
GeneTree:ENSGT00580000081617 KO:K06675 SUPFAM:SSF75553 OMA:IAIEFLT
CTD:10051 EMBL:AAEX03017331 RefSeq:XP_535848.2
Ensembl:ENSCAFT00000022729 GeneID:478679 KEGG:cfa:478679
Uniprot:E2RCX4
Length = 1288
Score = 417 (151.9 bits), Expect = 1.1e-50, Sum P(3) = 1.1e-50
Identities = 78/142 (54%), Positives = 106/142 (74%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF+ IIGPNGSGKSNVIDSMLFVFGYRA KIR+ KLSVL+H SD+ + C+V +HF +
Sbjct: 107 RFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIRSKKLSVLIHNSDEHKDIQSCTVEVHFQK 166
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
IIDK ++YE+IP ++ ++RTA+ DN+S Y ++GKK FK+V +LR HG+DL +NRFL
Sbjct: 167 IIDKEGDDYEVIPNSNFYVSRTAYRDNTSVYHISGKKTTFKDVGNLLRSHGIDLDHNRFL 226
Query: 277 ILQEPIAKMEVLYGKYDEERTE 298
ILQ + ++ ++ K E E
Sbjct: 227 ILQGEVEQIAMMKPKGQTEHDE 248
Score = 154 (59.3 bits), Expect = 8.2e-15, Sum P(2) = 8.2e-15
Identities = 47/139 (33%), Positives = 72/139 (51%)
Query: 251 GKKVHFKEVAKVLRDH-GVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETD 309
G+ H + + + L D G LN IL ++E+L +E R EKL RV+LVE +
Sbjct: 242 GQTEHDEGMLEYLEDIIGSGRLNEPIKIL---CRRVEIL----NEHRGEKLNRVKLVEKE 294
Query: 310 LKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLES 369
ALE E A+ FL LEN + RK N + QY Y K + E ET+ +++ ++ E
Sbjct: 295 KDALEGEKNIAIEFLTLENEIFRKKNHVCQYYIYDLQKRIAEMETQKEKIHEDTKEINEK 354
Query: 370 IKKCTDEMESAKTELKTVE 388
++EM++ +K VE
Sbjct: 355 SSILSNEMKAKNKAVKDVE 373
Score = 123 (48.4 bits), Expect = 6.9e-13, Sum P(3) = 6.9e-13
Identities = 23/33 (69%), Positives = 29/33 (87%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNR 132
GEVEQI+MM PKG+TE + G+LEYLE+IIG+ R
Sbjct: 230 GEVEQIAMMKPKGQTEHDEGMLEYLEDIIGSGR 262
Score = 118 (46.6 bits), Expect = 8.2e-15, Sum P(2) = 8.2e-15
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 125 EEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRF 158
E+I+G +KRF+ IIGPNGSGKSNVIDSMLF F
Sbjct: 98 EKILGPF-HKRFSCIIGPNGSGKSNVIDSMLFVF 130
Score = 105 (42.0 bits), Expect = 1.1e-50, Sum P(3) = 1.1e-50
Identities = 24/41 (58%), Positives = 27/41 (65%)
Query: 59 IPPIAPVCFADPTG-PRLIITKIVAFNFKSYAGYVTLGPFN 98
IPP P A+ G PRL+IT IV NFKSYAG LGPF+
Sbjct: 65 IPPPPPPAMANEAGAPRLMITHIVNQNFKSYAGEKILGPFH 105
Score = 71 (30.1 bits), Expect = 1.1e-50, Sum P(3) = 1.1e-50
Identities = 31/119 (26%), Positives = 57/119 (47%)
Query: 278 LQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKA-------LEPELRKAVNFLELENCV 330
LQ+ IA+ME K E+ E + ++ ++KA +E +L K F+E EN
Sbjct: 330 LQKRIAEMETQKEKIHEDTKEINEKSSILSNEMKAKNKAVKDVEKKLNKITKFIE-EN-- 386
Query: 331 QRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESI---KKCTDEMESAKTELKT 386
++K ++ + V K L +K +++E++L + E + K + E TE+ T
Sbjct: 387 KQKFTQLDLEDVQVREK-LKHASSKAKKLEKQLQKDKEKVEEFKSIPAKSEKIITEMTT 444
Score = 69 (29.3 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 36/135 (26%), Positives = 60/135 (44%)
Query: 257 KEVAKVLRDHGVDL-LNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEP 315
K A+V R H + +NN L Q+ K++ + + DE +T+ Q+ +K +
Sbjct: 879 KVEAEVKRLHNTIVEINNHKLKAQQD--KLDKINKQLDE-CASAITKAQVA---IKTADR 932
Query: 316 ELRKAVNFLELENCVQRKHNEIYQYERYVN--MKNLGEHETKVQQMEQELTANLESIKKC 373
L+KA ++ V R EI E+ V L E K ++ Q TA ES+ +
Sbjct: 933 NLKKA------QDSVFRTEEEIKDTEKEVKDLTAELKSVEDKAAEVYQNTTAAEESLPEI 986
Query: 374 TDEMESAKTELKTVE 388
E + ELK ++
Sbjct: 987 QKEHRNLLQELKIIQ 1001
Score = 55 (24.4 bits), Expect = 2.9e-11, Sum P(3) = 2.9e-11
Identities = 33/157 (21%), Positives = 68/157 (43%)
Query: 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLT 301
D+ + +KV +E LR + ++ N L++ A ++ L E+ E L
Sbjct: 786 DSQKALQIQEQKVQLEEAVVKLRHNEREMRNT----LEKFTASIQRL-----SEQEEYLN 836
Query: 302 -RVQLVETDLKALEPELRK--------AVNFLELENCVQRKHNEIYQYERYVN-MKNLGE 351
+V+ +E ++ A P+ +K +V E +N +R + +R N + +
Sbjct: 837 IQVKELEANVLATAPDKKKQKLLEENVSVFKTEYDNVAERAGKVEAEVKRLHNTIVEINN 896
Query: 352 HETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
H+ K QQ +L + + +C + A+ +KT +
Sbjct: 897 HKLKAQQ--DKLDKINKQLDECASAITKAQVAIKTAD 931
Score = 46 (21.3 bits), Expect = 4.6e-48, Sum P(3) = 4.6e-48
Identities = 19/107 (17%), Positives = 50/107 (46%)
Query: 278 LQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEI 337
L+ +K + L + +++ EK+ + + + + E+ + LE E +++ ++
Sbjct: 404 LKHASSKAKKLEKQLQKDK-EKVEEFKSIPAKSEKIITEMTTRNSALEKEK--EKEEKKL 460
Query: 338 YQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTEL 384
+ + + G K + E+EL +S+ + +M+ A++EL
Sbjct: 461 KEVMDSLKQETQGLQREK-ESREKELMGFSKSVNEARSKMDVAQSEL 506
Score = 39 (18.8 bits), Expect = 2.5e-47, Sum P(3) = 2.5e-47
Identities = 11/56 (19%), Positives = 28/56 (50%)
Query: 315 PELRKAV-NFLELENCVQRKHNEIYQYERYVNMK------NLGEHETKVQQMEQEL 363
PE++K N L+ +Q + + + + +K ++ EH +K++ ++E+
Sbjct: 984 PEIQKEHRNLLQELKIIQENEHALQKDALSIKLKLEQIDGHIAEHNSKIKYWQKEI 1039
>UNIPROTKB|Q9ERA5 [details] [associations]
symbol:SMC4 "Structural maintenance of chromosomes protein
4" species:47230 "Microtus arvalis" [GO:0007076 "mitotic chromosome
condensation" evidence=ISS] [GO:0046982 "protein heterodimerization
activity" evidence=ISS] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0005694 GO:GO:0051301 GO:GO:0006281 GO:GO:0006310
GO:GO:0046982 GO:GO:0007076 GO:GO:0007062 SUPFAM:SSF75553
HOVERGEN:HBG106696 EMBL:AJ299713 EMBL:AJ299717
ProteinModelPortal:Q9ERA5 Uniprot:Q9ERA5
Length = 1243
Score = 412 (150.1 bits), Expect = 3.6e-49, Sum P(3) = 3.6e-49
Identities = 78/142 (54%), Positives = 106/142 (74%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF+ IIGPNGSGKSNVIDSMLFVFGYRA KIR+ KLSVL+H SD+ + C+V +HF +
Sbjct: 62 RFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIRSKKLSVLIHNSDEHKDIQSCTVEVHFQK 121
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
IIDK ++YE+IP ++ ++RTA+ DN+S Y ++GKK FK+V +LR HG+DL +NRFL
Sbjct: 122 IIDKEGDDYEVIPNSNFCVSRTAYRDNTSVYHISGKKRTFKDVGNLLRSHGIDLDHNRFL 181
Query: 277 ILQEPIAKMEVLYGKYDEERTE 298
ILQ + ++ ++ K E E
Sbjct: 182 ILQGEVEQIAMMKPKGQTEHDE 203
Score = 138 (53.6 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 40/139 (28%), Positives = 72/139 (51%)
Query: 251 GKKVHFKEVAKVLRDH-GVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETD 309
G+ H + + + L D G LN +L ++E+L +E R EKL RV++VE +
Sbjct: 197 GQTEHDEGMLEYLEDIIGCGRLNEPIKVL---CRRVEIL----NENRGEKLNRVKMVEKE 249
Query: 310 LKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLES 369
A+E E A+ FL LE + +K N + QY Y K + E +T+ +++ ++ E
Sbjct: 250 KDAVEGEKNIAIEFLTLEKEMFKKKNHVCQYYIYDLQKRIDEMKTQKEKIHEDTKEITEK 309
Query: 370 IKKCTDEMESAKTELKTVE 388
++EM++ + +K +E
Sbjct: 310 SNMLSNEMKAKNSAVKDIE 328
Score = 121 (47.7 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNR 132
GEVEQI+MM PKG+TE + G+LEYLE+IIG R
Sbjct: 185 GEVEQIAMMKPKGQTEHDEGMLEYLEDIIGCGR 217
Score = 118 (46.6 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 125 EEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRF 158
E+I+G +KRF+ IIGPNGSGKSNVIDSMLF F
Sbjct: 53 EKILGPF-HKRFSCIIGPNGSGKSNVIDSMLFVF 85
Score = 95 (38.5 bits), Expect = 3.6e-49, Sum P(3) = 3.6e-49
Identities = 23/41 (56%), Positives = 25/41 (60%)
Query: 59 IPPIAPVCFADPTG-PRLIITKIVAFNFKSYAGYVTLGPFN 98
IPP P A G PRL+IT IV NFKS AG LGPF+
Sbjct: 20 IPPPPPPAMASEAGAPRLMITHIVNQNFKSCAGEKILGPFH 60
Score = 71 (30.1 bits), Expect = 3.6e-49, Sum P(3) = 3.6e-49
Identities = 29/117 (24%), Positives = 58/117 (49%)
Query: 278 LQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKA-------LEPELRKAVNFLELENCV 330
LQ+ I +M+ K E+ E + ++ ++KA +E +L KA F+E EN
Sbjct: 285 LQKRIDEMKTQKEKIHEDTKEITEKSNMLSNEMKAKNSAVKDIEKKLHKATKFIE-EN-- 341
Query: 331 QRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTV 387
+ K ++ + V K L +K +++E++L + E + +E++S + KT+
Sbjct: 342 KEKFRQLDLEDVQVREK-LKHATSKAKKLEKQLQKDKEKV----EELKSIPAKSKTI 393
Score = 70 (29.7 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 36/135 (26%), Positives = 64/135 (47%)
Query: 257 KEVAKVLRDHGVDL-LNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEP 315
K A+V R H + +NNR L Q+ K++++ + DE +T+ Q+ +K +
Sbjct: 834 KVEAEVKRLHDTIIEINNRKLKAQQN--KLDMINKQLDE-CASAITKAQVA---IKTADR 887
Query: 316 ELRKAVNFLELENCVQRKHNEIYQYERYVN-MK-NLGEHETKVQQMEQELTANLESIKKC 373
L KA ++ V R EI E+ N +K L E K +++ ++ A ES+ +
Sbjct: 888 NLIKA------QDSVVRTEKEIKDTEKETNDLKAELKAIEDKAEEVIKKTNAAEESLPEI 941
Query: 374 TDEMESAKTELKTVE 388
E + ELK ++
Sbjct: 942 QKEHRNLLQELKVIQ 956
Score = 56 (24.8 bits), Expect = 1.3e-47, Sum P(3) = 1.3e-47
Identities = 22/107 (20%), Positives = 51/107 (47%)
Query: 278 LQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEI 337
L+ +K + L + +++ EK+ ++ + K + E + LE E +++ ++
Sbjct: 359 LKHATSKAKKLEKQLQKDK-EKVEELKSIPAKSKTIINETTTKSSSLEKEK--EKEEKKL 415
Query: 338 YQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTEL 384
+ + + G + K Q E+EL +S+ + +ME A++EL
Sbjct: 416 KEVMDSLKQETQGLQKEKEDQ-EKELMGFNKSVNEARSKMEVAQSEL 461
Score = 54 (24.1 bits), Expect = 2.1e-47, Sum P(3) = 2.1e-47
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 349 LGEHETKVQQMEQELTANLESIKKCTDEMESAKT 382
+GE TK+ Q +QEL + ++K T E + K+
Sbjct: 496 IGEINTKLPQTQQELKEKEKELQKLTQEEINLKS 529
Score = 44 (20.5 bits), Expect = 2.3e-46, Sum P(3) = 2.3e-46
Identities = 14/78 (17%), Positives = 37/78 (47%)
Query: 294 EERTEK-LTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMK----- 347
E++ E+ + + E L ++ E R N L+ +Q + + + + +K
Sbjct: 921 EDKAEEVIKKTNAAEESLPEIQKEHR---NLLQELKVIQENEHALQKDALSIKLKLEQID 977
Query: 348 -NLGEHETKVQQMEQELT 364
++ EH +K++ ++E++
Sbjct: 978 GHIAEHNSKIKYWQKEIS 995
>MGI|MGI:1917349 [details] [associations]
symbol:Smc4 "structural maintenance of chromosomes 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000796 "condensin complex" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0007076
"mitotic chromosome condensation" evidence=ISO] [GO:0010032
"meiotic chromosome condensation" evidence=IMP] [GO:0030261
"chromosome condensation" evidence=IEA] [GO:0045132 "meiotic
chromosome segregation" evidence=IMP] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] [GO:0051276 "chromosome
organization" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0051383 "kinetochore organization" evidence=IMP]
InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 MGI:MGI:1917349
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0051301 GO:GO:0006281 GO:GO:0006310 GO:GO:0046982
GO:GO:0045132 GO:GO:0007076 GO:GO:0051383 GO:GO:0000796
GO:GO:0010032 GO:GO:0007062 eggNOG:COG1196
GeneTree:ENSGT00580000081617 KO:K06675 SUPFAM:SSF75553 PDB:3L51
PDBsum:3L51 OMA:IAIEFLT CTD:10051 HOGENOM:HOG000184777
HOVERGEN:HBG106696 OrthoDB:EOG4PZJ5V EMBL:AJ534940 EMBL:BC005507
EMBL:BC062939 EMBL:AK088350 EMBL:AK088846 IPI:IPI00229397
RefSeq:NP_598547.1 UniGene:Mm.206841 ProteinModelPortal:Q8CG47
SMR:Q8CG47 STRING:Q8CG47 PhosphoSite:Q8CG47 PaxDb:Q8CG47
PRIDE:Q8CG47 Ensembl:ENSMUST00000042901 GeneID:70099 KEGG:mmu:70099
UCSC:uc008pma.1 InParanoid:Q8CG47 ChiTaRS:SMC4
EvolutionaryTrace:Q8CG47 NextBio:330998 Bgee:Q8CG47 CleanEx:MM_SMC4
Genevestigator:Q8CG47 GermOnline:ENSMUSG00000034349 Uniprot:Q8CG47
Length = 1286
Score = 408 (148.7 bits), Expect = 7.0e-49, Sum P(3) = 7.0e-49
Identities = 76/142 (53%), Positives = 106/142 (74%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF+ IIGPNGSGKSNVIDSMLFVFGYRA KIR+ KLSVL+H SD+ + C+V +HF +
Sbjct: 105 RFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIRSKKLSVLIHNSDEHKDIQSCTVEVHFQK 164
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
IIDK ++YE++P ++ ++RTA+ D++S Y ++GKK FK+V +LR HG+DL +NRFL
Sbjct: 165 IIDKEGDDYEVLPNSNFYVSRTAYRDSTSVYHISGKKKTFKDVGNLLRSHGIDLDHNRFL 224
Query: 277 ILQEPIAKMEVLYGKYDEERTE 298
ILQ + ++ ++ K E E
Sbjct: 225 ILQGEVEQIAMMKPKGQTEHDE 246
Score = 141 (54.7 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 43/139 (30%), Positives = 71/139 (51%)
Query: 251 GKKVHFKEVAKVLRDH-GVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETD 309
G+ H + + + L D G LN +L ++E+L +E R EKL RV++VE +
Sbjct: 240 GQTEHDEGMLEYLEDIIGCGRLNEPIKVL---CRRVEIL----NEHRGEKLNRVKMVEKE 292
Query: 310 LKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLES 369
ALE E A+ FL LEN + +K N I QY Y + E T+ +++ ++ E
Sbjct: 293 KDALEGEKNIAIEFLTLENEMFKKKNHICQYYIYDLQNRIAEITTQKEKIHEDTKEITEK 352
Query: 370 IKKCTDEMESAKTELKTVE 388
++EM++ + +K VE
Sbjct: 353 SNVLSNEMKAKNSAVKDVE 371
Score = 121 (47.7 bits), Expect = 7.4e-12, Sum P(3) = 7.4e-12
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNR 132
GEVEQI+MM PKG+TE + G+LEYLE+IIG R
Sbjct: 228 GEVEQIAMMKPKGQTEHDEGMLEYLEDIIGCGR 260
Score = 117 (46.2 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 24/34 (70%), Positives = 29/34 (85%)
Query: 125 EEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRF 158
E+++G +KRF+ IIGPNGSGKSNVIDSMLF F
Sbjct: 96 EKVLGPF-HKRFSCIIGPNGSGKSNVIDSMLFVF 128
Score = 105 (42.0 bits), Expect = 7.0e-49, Sum P(3) = 7.0e-49
Identities = 24/41 (58%), Positives = 26/41 (63%)
Query: 59 IPPIAPVCFADPTG-PRLIITKIVAFNFKSYAGYVTLGPFN 98
IPP P A G PRL+IT IV NFKSYAG LGPF+
Sbjct: 63 IPPPPPPAMASEAGAPRLMITHIVNQNFKSYAGEKVLGPFH 103
Score = 63 (27.2 bits), Expect = 7.0e-49, Sum P(3) = 7.0e-49
Identities = 28/117 (23%), Positives = 56/117 (47%)
Query: 278 LQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKA-------LEPELRKAVNFLELENCV 330
LQ IA++ K E+ E + ++ ++KA +E +L K F+E +N
Sbjct: 328 LQNRIAEITTQKEKIHEDTKEITEKSNVLSNEMKAKNSAVKDVEKKLNKVTKFIE-QN-- 384
Query: 331 QRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTV 387
+ K ++ + V K L +K +++E++L + E + +E++S + KTV
Sbjct: 385 KEKFTQLDLEDVQVREK-LKHATSKAKKLEKQLQKDKEKV----EELKSVPAKSKTV 436
Score = 58 (25.5 bits), Expect = 2.3e-48, Sum P(3) = 2.3e-48
Identities = 24/108 (22%), Positives = 53/108 (49%)
Query: 278 LQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEI 337
L+ +K + L + +++ EK+ ++ V K + E N LE E +++ ++
Sbjct: 402 LKHATSKAKKLEKQLQKDK-EKVEELKSVPAKSKTVINETTTRNNSLEKER--EKEEKKL 458
Query: 338 YQYERYVNMKNLG-EHETKVQQMEQELTANLESIKKCTDEMESAKTEL 384
+ + + G + E ++Q E+EL +S+ + +ME A++EL
Sbjct: 459 KEVMDSLKQETQGLQKEKEIQ--EKELMGFNKSVNEARSKMEVAQSEL 504
Score = 50 (22.7 bits), Expect = 1.6e-47, Sum P(3) = 1.6e-47
Identities = 15/78 (19%), Positives = 38/78 (48%)
Query: 294 EERTEK-LTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMK----- 347
E++ E+ + + ET L ++ E R N L+ +Q + + + + +K
Sbjct: 964 EDKAEEVINNTKTAETSLPEIQKEHR---NLLQELKVIQENEHALQKDALSIKLKLEQID 1020
Query: 348 -NLGEHETKVQQMEQELT 364
++ EH +K++ ++E++
Sbjct: 1021 GHISEHNSKIKYWQKEIS 1038
Score = 50 (22.7 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 37/166 (22%), Positives = 71/166 (42%)
Query: 219 DKPN-EEYEIIPG-TDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
DK EE + +P + I T +NS ++ KEV L+ L + +
Sbjct: 419 DKEKVEELKSVPAKSKTVINETTTRNNSLEKEREKEEKKLKEVMDSLKQETQGLQKEKEI 478
Query: 277 ILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNE 336
QE + L G +++ E +++++ +++L AV+ L +E
Sbjct: 479 --QE-----KELMG-FNKSVNEARSKMEVAQSELDIYLSRHNTAVSQLSKAKEALITASE 530
Query: 337 IYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKT 382
+ ER +K++ TK+ Q +QEL + ++K T E + K+
Sbjct: 531 TLK-ERKAAIKDIN---TKLPQTQQELKEKEKELQKLTQEEINLKS 572
Score = 48 (22.0 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 36/147 (24%), Positives = 67/147 (45%)
Query: 252 KKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKL-TRVQLVETDL 310
+KV +E LR D+ N L++ A ++ L E+ E L +++ +E ++
Sbjct: 794 QKVQHEEAVVKLRHSERDMRNT----LEKFAASIQGL-----SEQEEYLCVQIKELEANV 844
Query: 311 KALEPELRKAVNFLELENC--VQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTAN-- 366
P+ RK LE EN +++++ + + V + H T + ++L A
Sbjct: 845 LTTAPD-RKQQKLLE-ENVSVFKKEYDAVAEKAGKVEAEIKRLHNTIIDINNRKLKAQQN 902
Query: 367 -LESIKKCTDEMESAKTE----LKTVE 388
L++I K DE SA T+ +KT +
Sbjct: 903 KLDTINKQLDECASAITKAQVAIKTAD 929
Score = 44 (20.5 bits), Expect = 6.8e-47, Sum P(3) = 6.8e-47
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 353 ETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
+ +++ + + + IK E+ KTELK +E
Sbjct: 929 DRNLKKAQDSVCRTEKEIKDTEKEINDLKTELKNIE 964
>UNIPROTKB|F1MAD9 [details] [associations]
symbol:Smc4 "Structural maintenance of chromosomes protein"
species:10116 "Rattus norvegicus" [GO:0000796 "condensin complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0007062 "sister chromatid
cohesion" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0010032 "meiotic chromosome
condensation" evidence=IEA] [GO:0045132 "meiotic chromosome
segregation" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0051383 "kinetochore organization"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
RGD:1306680 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0006281
GO:GO:0006310 GO:GO:0007076 GO:GO:0000796 GO:GO:0007062
GeneTree:ENSGT00580000081617 KO:K06675 SUPFAM:SSF75553 OMA:IAIEFLT
CTD:10051 IPI:IPI00372213 RefSeq:NP_001032262.2 UniGene:Rn.163695
Ensembl:ENSRNOT00000013931 GeneID:295107 KEGG:rno:295107
NextBio:638993 Uniprot:F1MAD9
Length = 1286
Score = 409 (149.0 bits), Expect = 4.8e-48, Sum P(3) = 4.8e-48
Identities = 76/142 (53%), Positives = 106/142 (74%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF+ IIGPNGSGKSNVIDSMLFVFGYRA KIR+ KLSVL+H SD+ + C+V +HF +
Sbjct: 105 RFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIRSKKLSVLIHNSDEHTDIQSCTVEVHFQK 164
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
IIDK ++Y+++P ++ ++RTA+ DN+S Y ++GKK FK+V +LR HG+DL +NRFL
Sbjct: 165 IIDKEGDDYDVLPNSNFYVSRTAYRDNTSVYHISGKKRTFKDVGNLLRSHGIDLDHNRFL 224
Query: 277 ILQEPIAKMEVLYGKYDEERTE 298
ILQ + ++ ++ K E E
Sbjct: 225 ILQGEVEQIAMMKPKGQTEHDE 246
Score = 145 (56.1 bits), Expect = 8.2e-14, Sum P(2) = 8.2e-14
Identities = 42/139 (30%), Positives = 72/139 (51%)
Query: 251 GKKVHFKEVAKVLRDH-GVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETD 309
G+ H + + + L D G LN +L ++E+L +E R EKL RV++VE +
Sbjct: 240 GQTEHDEGMLEYLEDIIGCGRLNEPIKVL---CRRVEIL----NEHRGEKLNRVKMVEKE 292
Query: 310 LKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLES 369
ALE E A+ FL LEN + +K N I QY Y + E +T+ +++ ++ E
Sbjct: 293 KDALEGEKNIAIEFLTLENEIFKKKNHICQYYIYDLQNRIAEMKTQKEKIHEDTKEITEK 352
Query: 370 IKKCTDEMESAKTELKTVE 388
++EM++ + +K +E
Sbjct: 353 SNVLSNEMKAKNSAVKDIE 371
Score = 121 (47.7 bits), Expect = 6.0e-11, Sum P(3) = 6.0e-11
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNR 132
GEVEQI+MM PKG+TE + G+LEYLE+IIG R
Sbjct: 228 GEVEQIAMMKPKGQTEHDEGMLEYLEDIIGCGR 260
Score = 118 (46.6 bits), Expect = 8.2e-14, Sum P(2) = 8.2e-14
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 125 EEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRF 158
E+I+G +KRF+ IIGPNGSGKSNVIDSMLF F
Sbjct: 96 EKILGPF-HKRFSCIIGPNGSGKSNVIDSMLFVF 128
Score = 104 (41.7 bits), Expect = 4.8e-48, Sum P(3) = 4.8e-48
Identities = 24/41 (58%), Positives = 26/41 (63%)
Query: 59 IPPIAPVCFADPTG-PRLIITKIVAFNFKSYAGYVTLGPFN 98
IPP P A G PRL+IT IV NFKSYAG LGPF+
Sbjct: 63 IPPPPPPAMASEAGAPRLMITHIVNQNFKSYAGEKILGPFH 103
Score = 55 (24.4 bits), Expect = 4.8e-48, Sum P(3) = 4.8e-48
Identities = 23/108 (21%), Positives = 53/108 (49%)
Query: 278 LQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEI 337
L+ +K + L + +++ EK+ ++ + K + E N LE E +++ ++
Sbjct: 402 LKHATSKAKKLEKQLQKDK-EKVEELKSIPAKSKNVINETTTRNNSLEKER--EKEEKKL 458
Query: 338 YQYERYVNMKNLG-EHETKVQQMEQELTANLESIKKCTDEMESAKTEL 384
+ + + G + E ++Q E+EL +S+ + +ME A++EL
Sbjct: 459 KEVMDSLKQETQGLQKEKEIQ--EKELMGFNKSVNEARSKMEVAQSEL 504
Score = 55 (24.4 bits), Expect = 6.0e-11, Sum P(3) = 6.0e-11
Identities = 29/135 (21%), Positives = 62/135 (45%)
Query: 261 KVLRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQL-VET---DLKALEPE 316
K L D +D+ NNR L Q+ K++ + + DE +T+ Q+ ++T +LK +
Sbjct: 883 KRLHDTIIDI-NNRKLKAQQN--KLDTINKQLDE-CASAITKAQVAIKTADRNLKKAQDS 938
Query: 317 L-RKAVNFLELENCVQRKHNEIYQYERYVN--MKNLGEHETKVQQMEQELTANLESIKKC 373
+ R + E + E+ E +KN + E + ++++E A L+ +K
Sbjct: 939 VCRTEKEIKDTEKEINDLKTELKNIEDNAEEVIKNTKDAEKSLPEIQKEHRALLQELKVI 998
Query: 374 TDEMESAKTELKTVE 388
D + + + +++
Sbjct: 999 QDNEHALQKDALSIK 1013
Score = 52 (23.4 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 37/166 (22%), Positives = 70/166 (42%)
Query: 219 DKPN-EEYEIIPGTDLEIAR-TAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
DK EE + IP + T +NS ++ KEV L+ L + +
Sbjct: 419 DKEKVEELKSIPAKSKNVINETTTRNNSLEKEREKEEKKLKEVMDSLKQETQGLQKEKEI 478
Query: 277 ILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNE 336
QE + L G +++ E +++++ +++L AV+ L +E
Sbjct: 479 --QE-----KELMG-FNKSVNEARSKMEVAQSELDIYLSRHNTAVSQLSKAKDALITASE 530
Query: 337 IYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKT 382
+ ER +K++ TK+ Q +QEL + ++K T E + K+
Sbjct: 531 TLK-ERKAAIKDIN---TKLPQAQQELKEKEKELQKLTQEEINLKS 572
Score = 40 (19.1 bits), Expect = 1.8e-46, Sum P(3) = 1.8e-46
Identities = 19/88 (21%), Positives = 36/88 (40%)
Query: 304 QLVETDLKALEPEL---RKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQME 360
Q ++ + + E EL K+VN + V + +IY + L + + +
Sbjct: 470 QGLQKEKEIQEKELMGFNKSVNEARSKMEVAQSELDIYLSRHNTAVSQLSKAKDALITAS 529
Query: 361 QELTANLESIKKCTDEMESAKTELKTVE 388
+ L +IK ++ A+ ELK E
Sbjct: 530 ETLKERKAAIKDINTKLPQAQQELKEKE 557
>RGD|1306680 [details] [associations]
symbol:Smc4 "structural maintenance of chromosomes 4"
species:10116 "Rattus norvegicus" [GO:0000796 "condensin complex"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007076 "mitotic chromosome
condensation" evidence=ISO] [GO:0010032 "meiotic chromosome
condensation" evidence=ISO] [GO:0045132 "meiotic chromosome
segregation" evidence=ISO] [GO:0046982 "protein heterodimerization
activity" evidence=ISO] [GO:0051383 "kinetochore organization"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003395 Pfam:PF02463 RGD:1306680 eggNOG:COG1196
HOGENOM:HOG000184777 OrthoDB:EOG4PZJ5V IPI:IPI00372213
UniGene:Rn.163695 EMBL:BC107944 ProteinModelPortal:Q32PX5
STRING:Q32PX5 UCSC:RGD:1306680 HOVERGEN:HBG082271 InParanoid:Q32PX5
Genevestigator:Q32PX5 Uniprot:Q32PX5
Length = 434
Score = 409 (149.0 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
Identities = 76/142 (53%), Positives = 106/142 (74%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF+ IIGPNGSGKSNVIDSMLFVFGYRA KIR+ KLSVL+H SD+ + C+V +HF +
Sbjct: 105 RFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIRSKKLSVLIHNSDEHTDIQSCTVEVHFQK 164
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
IIDK ++Y+++P ++ ++RTA+ DN+S Y ++GKK FK+V +LR HG+DL +NRFL
Sbjct: 165 IIDKEGDDYDVLPNSNFYVSRTAYRDNTSVYHISGKKRTFKDVGNLLRSHGIDLDHNRFL 224
Query: 277 ILQEPIAKMEVLYGKYDEERTE 298
ILQ + ++ ++ K E E
Sbjct: 225 ILQGEVEQIAMMKPKGQTEHDE 246
Score = 145 (56.1 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 42/139 (30%), Positives = 72/139 (51%)
Query: 251 GKKVHFKEVAKVLRDH-GVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETD 309
G+ H + + + L D G LN +L ++E+L +E R EKL RV++VE +
Sbjct: 240 GQTEHDEGMLEYLEDIIGCGRLNEPIKVL---CRRVEIL----NEHRGEKLNRVKMVEKE 292
Query: 310 LKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLES 369
ALE E A+ FL LEN + +K N I QY Y + E +T+ +++ ++ E
Sbjct: 293 KDALEGEKNIAIEFLTLENEIFKKKNHICQYYIYDLQNRIAEMKTQKEKIHEDTKEITEK 352
Query: 370 IKKCTDEMESAKTELKTVE 388
++EM++ + +K +E
Sbjct: 353 SNVLSNEMKAKNSAVKDIE 371
Score = 121 (47.7 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNR 132
GEVEQI+MM PKG+TE + G+LEYLE+IIG R
Sbjct: 228 GEVEQIAMMKPKGQTEHDEGMLEYLEDIIGCGR 260
Score = 118 (46.6 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 125 EEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRF 158
E+I+G +KRF+ IIGPNGSGKSNVIDSMLF F
Sbjct: 96 EKILGPF-HKRFSCIIGPNGSGKSNVIDSMLFVF 128
Score = 104 (41.7 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
Identities = 24/41 (58%), Positives = 26/41 (63%)
Query: 59 IPPIAPVCFADPTG-PRLIITKIVAFNFKSYAGYVTLGPFN 98
IPP P A G PRL+IT IV NFKSYAG LGPF+
Sbjct: 63 IPPPPPPAMASEAGAPRLMITHIVNQNFKSYAGEKILGPFH 103
>UNIPROTKB|P50532 [details] [associations]
symbol:smc4 "Structural maintenance of chromosomes protein
4" species:8355 "Xenopus laevis" [GO:0007076 "mitotic chromosome
condensation" evidence=ISS] [GO:0046982 "protein heterodimerization
activity" evidence=ISS] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0005694 GO:GO:0051301 GO:GO:0006281 GO:GO:0006310
GO:GO:0046982 GO:GO:0007076 GO:GO:0007062 KO:K06675 SUPFAM:SSF75553
CTD:10051 HOVERGEN:HBG106696 EMBL:U13673 PIR:A55094
RefSeq:NP_001081371.1 UniGene:Xl.927 ProteinModelPortal:P50532
IntAct:P50532 GeneID:397799 KEGG:xla:397799 Xenbase:XB-GENE-5865892
Uniprot:P50532
Length = 1290
Score = 420 (152.9 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 95/218 (43%), Positives = 142/218 (65%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF+ IIGPNGSGKSNVIDSMLFVFGYRA KIR+ KLSVL+H SD+ V C+V +HF +
Sbjct: 101 RFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIRSKKLSVLIHNSDEHKDVQSCTVEVHFQK 160
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
IIDK +++E+IP ++ ++RTA+ DNSS Y ++GKK FK+V +LR HG+DL +NRFL
Sbjct: 161 IIDKEGDDFEVIPNSNFYVSRTAYKDNSSVYHISGKKATFKDVGLLLRSHGIDLDHNRFL 220
Query: 277 ILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFL--ELENCVQRKH 334
ILQ + ++ ++ K E E + ++ +E D+ E L++ + L +E +++
Sbjct: 221 ILQGEVEQIAMMKPKGQTEHDEGM--LEYLE-DIIGSE-RLKEPIQILCRRVELLNEQRG 276
Query: 335 NEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKK 372
++ + + K+ E E K + +E LT E+ KK
Sbjct: 277 EKLNRVKMVEKEKDALEGE-KNKAIEF-LTVENETFKK 312
Score = 133 (51.9 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 35/111 (31%), Positives = 58/111 (52%)
Query: 278 LQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEI 337
L+EPI + +E+R EKL RV++VE + ALE E KA+ FL +EN +K N++
Sbjct: 257 LKEPIQILCRRVELLNEQRGEKLNRVKMVEKEKDALEGEKNKAIEFLTVENETFKKKNQL 316
Query: 338 YQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
QY + K + E + ++++++ E + M+ LK VE
Sbjct: 317 CQYYIHDLQKRSRDKEAQKEKIQEDTKDISEKSNTLLETMKEKNKALKDVE 367
Score = 127 (49.8 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYK 134
GEVEQI+MM PKG+TE + G+LEYLE+IIG+ R K
Sbjct: 224 GEVEQIAMMKPKGQTEHDEGMLEYLEDIIGSERLK 258
Score = 117 (46.2 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 25/34 (73%), Positives = 28/34 (82%)
Query: 125 EEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRF 158
E I+G +KRF+ IIGPNGSGKSNVIDSMLF F
Sbjct: 92 ERILGPF-HKRFSCIIGPNGSGKSNVIDSMLFVF 124
Score = 100 (40.3 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 23/41 (56%), Positives = 26/41 (63%)
Query: 59 IPPIAPVCFADPTG-PRLIITKIVAFNFKSYAGYVTLGPFN 98
IPP P + G PRL+IT IV NFKSYAG LGPF+
Sbjct: 59 IPPPPPPAMTNEAGAPRLMITHIVNQNFKSYAGERILGPFH 99
Score = 77 (32.2 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 30/112 (26%), Positives = 53/112 (47%)
Query: 278 LQEPIAKMEVLYGKYDEE--RTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHN 335
L++ K+ GK + E R KL V + LKA + +L K E++ C
Sbjct: 860 LKKEYEKVAEKAGKVEAEVKRLHKLI-VDINNHKLKAQQDKLDKVTK--EIDECASAITK 916
Query: 336 EIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTV 387
Q +NL + E V + E+E+ AN +SI++ T++++ + + TV
Sbjct: 917 A--QVSIKTADRNLKKSEEAVARTEKEIVANDKSIEELTEDLKKLEEKATTV 966
Score = 66 (28.3 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 34/111 (30%), Positives = 55/111 (49%)
Query: 291 KYDEERTEKLTRVQLVETD-----------LKALEPELRKAVNFL-ELENCVQRKHNEIY 338
K+ EE EK T++ L + D +K L+ +L+K + EL+N V +I
Sbjct: 375 KFIEENREKFTQLDLQDVDTREKLKHSKSKVKKLQKQLQKDKEKVDELKN-VPANSQKII 433
Query: 339 QYERYVNMKNLGEHETKVQQMEQELTAN-LESIKKCTDEMESAKTELKTVE 388
E N K+L E K ++ E+E N ++S+KK T ++ K E+K E
Sbjct: 434 AEE--TNKKDLLE---KQKEKEEEKLKNVMDSLKKETQGLQEEK-EVKEKE 478
Score = 59 (25.8 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 21/105 (20%), Positives = 53/105 (50%)
Query: 291 KYDEERTEKLTRVQLVETDLKALEPELRKAVNFL----ELENCVQRKHNEIYQYERYVNM 346
K +E+ T + + E L ++ + R + + E E+ +Q++ I ++
Sbjct: 958 KLEEKATTVMNECKEAECSLPEVQEQHRSLLQEIKAIQEKEHALQKEALNIRLNIEQID- 1016
Query: 347 KNLGEHETKVQQMEQELTA-NLESIKKCTDEMES--AKTELKTVE 388
++ EH++K++ ++E+T +L I+ +E+ A+ EL+ ++
Sbjct: 1017 SHIAEHQSKIKYWQKEITKISLHKIEDIPEEVLPGLAQEELEAIK 1061
Score = 57 (25.1 bits), Expect = 2.1e-11, Sum P(3) = 2.1e-11
Identities = 23/102 (22%), Positives = 42/102 (41%)
Query: 282 IAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENC----VQRKHNEI 337
+ K E + ++E ++ + DLK LE + +N + C VQ +H +
Sbjct: 928 LKKSEEAVARTEKEIVANDKSIEELTEDLKKLEEKATTVMNECKEAECSLPEVQEQHRSL 987
Query: 338 YQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMES 379
Q +K + E E +Q+ + N+E I E +S
Sbjct: 988 LQ-----EIKAIQEKEHALQKEALNIRLNIEQIDSHIAEHQS 1024
Score = 54 (24.1 bits), Expect = 4.2e-11, Sum P(3) = 4.2e-11
Identities = 29/152 (19%), Positives = 64/152 (42%)
Query: 242 DNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNN--RFLILQEPIAKMEVLYGKYDEERTEK 299
D + + +K H +E LR ++ N ++ + +++ EV + K + E
Sbjct: 780 DTTRATEIQDRKAHLEEEVAKLRQATREMKNTFEKYTASLQSLSEQEV-HLKAQVKELE- 837
Query: 300 LTRVQLVETDLKALEPELRKAVNFLELE-NCVQRKHNEIYQYERYVN--MKNLGEHETKV 356
V D K + ++ K + L+ E V K ++ + ++ + ++ H+ K
Sbjct: 838 -VNVAAAAPD-KNQQKQMEKNLETLKKEYEKVAEKAGKVEAEVKRLHKLIVDINNHKLKA 895
Query: 357 QQMEQELTANLESIKKCTDEMESAKTELKTVE 388
QQ +L + I +C + A+ +KT +
Sbjct: 896 QQ--DKLDKVTKEIDECASAITKAQVSIKTAD 925
Score = 51 (23.0 bits), Expect = 8.5e-11, Sum P(3) = 8.5e-11
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 310 LKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLES 369
LK +E +L K F+E EN + K ++ + + L ++KV++++++L + E
Sbjct: 363 LKDVEKQLNKITKFIE-EN--REKFTQL-DLQDVDTREKLKHSKSKVKKLQKQLQKDKEK 418
Query: 370 I 370
+
Sbjct: 419 V 419
Score = 49 (22.3 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 27/116 (23%), Positives = 50/116 (43%)
Query: 277 ILQEPIAKMEVLYGKYDEER-TEKLTRVQLVETDLKALEPELRKAVNFLE-----LENCV 330
I + + KME K D R TE R +E ++ L R+ N E L++
Sbjct: 765 ISDDQLQKMENKL-KTDTTRATEIQDRKAHLEEEVAKLRQATREMKNTFEKYTASLQSLS 823
Query: 331 QRK-HNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELK 385
+++ H + E VN+ + + +QME+ L + +K ++ + E+K
Sbjct: 824 EQEVHLKAQVKELEVNVAAAAPDKNQQKQMEKNLETLKKEYEKVAEKAGKVEAEVK 879
Score = 47 (21.6 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 19/94 (20%), Positives = 41/94 (43%)
Query: 295 ERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKN-----L 349
+ +++ +L+E E + V EL+ + R ++ + Q + N L
Sbjct: 469 QEEKEVKEKELMEISKTVNEARSKMDVAQSELDIYLSRHNSALSQLNKAKEALNTASATL 528
Query: 350 GEHETKVQQMEQELTANLESIKKCTDEMESAKTE 383
E ++++E +L + +KK E+ES +E
Sbjct: 529 KERRAAIKELETKLPKDEGDLKKREKELESLVSE 562
>UNIPROTKB|C9J9E4 [details] [associations]
symbol:SMC4 "Structural maintenance of chromosomes protein
4" species:9606 "Homo sapiens" [GO:0010032 "meiotic chromosome
condensation" evidence=IEA] [GO:0045132 "meiotic chromosome
segregation" evidence=IEA] [GO:0051383 "kinetochore organization"
evidence=IEA] InterPro:IPR003395 Pfam:PF02463 EMBL:AC024221
HGNC:HGNC:14013 HOGENOM:HOG000031135 IPI:IPI00792419
ProteinModelPortal:C9J9E4 SMR:C9J9E4 STRING:C9J9E4
Ensembl:ENST00000485867 ArrayExpress:C9J9E4 Bgee:C9J9E4
Uniprot:C9J9E4
Length = 157
Score = 401 (146.2 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 75/123 (60%), Positives = 97/123 (78%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF+ IIGPNGSGKSNVIDSMLFVFGYRA KIR+ KLSVL+H SD+ + C+V +HF +
Sbjct: 35 RFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIRSKKLSVLIHNSDEHKDIQSCTVEVHFQK 94
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
IIDK ++YE+IP ++ ++RTA DN+S Y ++GKK FK+V +LR HG+DL +NRFL
Sbjct: 95 IIDKEGDDYEVIPNSNFYVSRTACRDNTSVYHISGKKKTFKDVGNLLRSHGIDLDHNRFL 154
Query: 277 ILQ 279
ILQ
Sbjct: 155 ILQ 157
Score = 118 (46.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 125 EEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRF 158
E+I+G +KRF+ IIGPNGSGKSNVIDSMLF F
Sbjct: 26 EKILGPF-HKRFSCIIGPNGSGKSNVIDSMLFVF 58
Score = 85 (35.0 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 73 PRLIITKIVAFNFKSYAGYVTLGPFN 98
PRL+IT IV NFKSYAG LGPF+
Sbjct: 8 PRLMITHIVNQNFKSYAGEKILGPFH 33
>UNIPROTKB|C9JR83 [details] [associations]
symbol:SMC4 "Structural maintenance of chromosomes protein
4" species:9606 "Homo sapiens" [GO:0010032 "meiotic chromosome
condensation" evidence=IEA] [GO:0045132 "meiotic chromosome
segregation" evidence=IEA] [GO:0051383 "kinetochore organization"
evidence=IEA] InterPro:IPR003395 Pfam:PF02463 EMBL:AC024221
HGNC:HGNC:14013 HOGENOM:HOG000201987 IPI:IPI00947372
ProteinModelPortal:C9JR83 SMR:C9JR83 STRING:C9JR83
Ensembl:ENST00000489573 ArrayExpress:C9JR83 Bgee:C9JR83
Uniprot:C9JR83
Length = 423
Score = 410 (149.4 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 78/142 (54%), Positives = 105/142 (73%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF+ IIGPNGSGKSNVIDSMLFVFGYRA KIR+ KLSVL+H SD+ + C+V +HF +
Sbjct: 107 RFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIRSKKLSVLIHNSDEHKDIQSCTVEVHFQK 166
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
IIDK ++YE+IP ++ ++RTA DN+S Y ++GKK FK+V +LR HG+DL +NRFL
Sbjct: 167 IIDKEGDDYEVIPNSNFYVSRTACRDNTSVYHISGKKKTFKDVGNLLRSHGIDLDHNRFL 226
Query: 277 ILQEPIAKMEVLYGKYDEERTE 298
ILQ + ++ ++ K E E
Sbjct: 227 ILQGEVEQIAMMKPKGQTEHDE 248
Score = 152 (58.6 bits), Expect = 5.8e-16, Sum P(2) = 5.8e-16
Identities = 44/139 (31%), Positives = 72/139 (51%)
Query: 251 GKKVHFKEVAKVLRDH-GVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETD 309
G+ H + + + L D G LN +L ++E+L +E R EKL RV++VE +
Sbjct: 242 GQTEHDEGMLEYLEDIIGCGRLNEPIKVL---CRRVEIL----NEHRGEKLNRVKMVEKE 294
Query: 310 LKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLES 369
ALE E A+ FL LEN + RK N + QY Y K + E ET+ +++ ++ E
Sbjct: 295 KDALEGEKNIAIEFLTLENEIFRKKNHVCQYYIYELQKRIAEMETQKEKIHEDTKEINEK 354
Query: 370 IKKCTDEMESAKTELKTVE 388
++EM++ ++K E
Sbjct: 355 SNILSNEMKAKNKDVKDTE 373
Score = 121 (47.7 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNR 132
GEVEQI+MM PKG+TE + G+LEYLE+IIG R
Sbjct: 230 GEVEQIAMMKPKGQTEHDEGMLEYLEDIIGCGR 262
Score = 118 (46.6 bits), Expect = 5.8e-16, Sum P(2) = 5.8e-16
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 125 EEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRF 158
E+I+G +KRF+ IIGPNGSGKSNVIDSMLF F
Sbjct: 98 EKILGPF-HKRFSCIIGPNGSGKSNVIDSMLFVF 130
Score = 59 (25.8 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 20/94 (21%), Positives = 46/94 (48%)
Query: 278 LQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFL-ELENCVQRKHNE 336
LQ+ IA+ME K E+ E + ++ ++KA +++ L ++ ++ +
Sbjct: 330 LQKRIAEMETQKEKIHEDTKEINEKSNILSNEMKAKNKDVKDTEKKLNKITKFIEENKEK 389
Query: 337 IYQYE-RYVNMKNLGEHET-KVQQMEQELTANLE 368
Q + V ++ +H T K +++E++L + E
Sbjct: 390 FTQLDLEDVQVREKLKHATSKAKKLEKQLQKDKE 423
>UNIPROTKB|E9PD53 [details] [associations]
symbol:SMC4 "Structural maintenance of chromosomes protein"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0030261
"chromosome condensation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0005694 GO:GO:0006281 GO:GO:0006310 GO:GO:0030261
GO:GO:0007062 SUPFAM:SSF75553 EMBL:AC024221 HGNC:HGNC:14013
IPI:IPI00793575 ProteinModelPortal:E9PD53 SMR:E9PD53
Ensembl:ENST00000469762 UCSC:uc003fdi.3 ArrayExpress:E9PD53
Bgee:E9PD53 Uniprot:E9PD53
Length = 1263
Score = 419 (152.6 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 88/192 (45%), Positives = 120/192 (62%)
Query: 109 PPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSN--VIDSMLFRFNAIIGPNG 166
PP G+TE E G R I+ N + ++ RF+ IIGPNG
Sbjct: 34 PPSGRTESPATAAAMTNEA-GAPRLM-ITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNG 91
Query: 167 SGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYE 226
SGKSNVIDSMLFVFGYRA KIR+ KLSVL+H SD+ + C+V +HF +IIDK ++YE
Sbjct: 92 SGKSNVIDSMLFVFGYRAQKIRSKKLSVLIHNSDEHKDIQSCTVEVHFQKIIDKEGDDYE 151
Query: 227 IIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKME 286
+IP ++ ++RTA DN+S Y ++GKK FK+V +LR HG+DL +NRFLILQ + ++
Sbjct: 152 VIPNSNFYVSRTACRDNTSVYHISGKKKTFKDVGNLLRSHGIDLDHNRFLILQGEVEQIA 211
Query: 287 VLYGKYDEERTE 298
++ K E E
Sbjct: 212 MMKPKGQTEHDE 223
Score = 152 (58.6 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 44/139 (31%), Positives = 72/139 (51%)
Query: 251 GKKVHFKEVAKVLRDH-GVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETD 309
G+ H + + + L D G LN +L ++E+L +E R EKL RV++VE +
Sbjct: 217 GQTEHDEGMLEYLEDIIGCGRLNEPIKVL---CRRVEIL----NEHRGEKLNRVKMVEKE 269
Query: 310 LKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLES 369
ALE E A+ FL LEN + RK N + QY Y K + E ET+ +++ ++ E
Sbjct: 270 KDALEGEKNIAIEFLTLENEIFRKKNHVCQYYIYELQKRIAEMETQKEKIHEDTKEINEK 329
Query: 370 IKKCTDEMESAKTELKTVE 388
++EM++ ++K E
Sbjct: 330 SNILSNEMKAKNKDVKDTE 348
Score = 121 (47.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNR 132
GEVEQI+MM PKG+TE + G+LEYLE+IIG R
Sbjct: 205 GEVEQIAMMKPKGQTEHDEGMLEYLEDIIGCGR 237
Score = 64 (27.6 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 20/98 (20%), Positives = 49/98 (50%)
Query: 278 LQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFL-ELENCVQRKHNE 336
LQ+ IA+ME K E+ E + ++ ++KA +++ L ++ ++ +
Sbjct: 305 LQKRIAEMETQKEKIHEDTKEINEKSNILSNEMKAKNKDVKDTEKKLNKITKFIEENKEK 364
Query: 337 IYQYE-RYVNMKNLGEHET-KVQQMEQELTANLESIKK 372
Q + V ++ +H T K +++E++L + E +++
Sbjct: 365 FTQLDLEDVQVREKLKHATSKAKKLEKQLQKDKEKVEE 402
Score = 62 (26.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 34/135 (25%), Positives = 60/135 (44%)
Query: 257 KEVAKVLRDHGVDL-LNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEP 315
K A+V R H + +NN L Q+ K++ + + DE +T+ Q+ +K +
Sbjct: 854 KVEAEVKRLHNTIVEINNHKLKAQQD--KLDKINKQLDE-CASAITKAQVA---IKTADR 907
Query: 316 ELRKAVNFLELENCVQRKHNEIYQYERYVN--MKNLGEHETKVQQMEQELTANLESIKKC 373
L+KA ++ V R EI E+ V+ L E K ++ + A ES+ +
Sbjct: 908 NLQKA------QDSVLRTEKEIKDTEKEVDDLTAELKSLEDKAAEVVKNTNAAEESLPEI 961
Query: 374 TDEMESAKTELKTVE 388
E + ELK ++
Sbjct: 962 QKEHRNLLQELKVIQ 976
Score = 49 (22.3 bits), Expect = 4.5e-40, Sum P(2) = 4.5e-40
Identities = 23/93 (24%), Positives = 43/93 (46%)
Query: 295 ERTEKLT-RVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHE 353
E+ E L +V+ +E ++ A P+ +K E + + +++ + + V + H
Sbjct: 805 EQEEYLNVQVKELEANVLATAPDKKKQKLLEENVSAFKTEYDAVAEKAGKVEAEVKRLHN 864
Query: 354 TKVQQMEQELTAN---LESIKKCTDEMESAKTE 383
T V+ +L A L+ I K DE SA T+
Sbjct: 865 TIVEINNHKLKAQQDKLDKINKQLDECASAITK 897
Score = 48 (22.0 bits), Expect = 5.7e-40, Sum P(2) = 5.7e-40
Identities = 22/101 (21%), Positives = 47/101 (46%)
Query: 284 KMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERY 343
K+E K D+E+ E+ + ++ E R N LE E +++ ++ +
Sbjct: 388 KLEKQLQK-DKEKVEEFKSIPAKSNNI-INETTTRN--NALEKEK--EKEEKKLKEVMDS 441
Query: 344 VNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTEL 384
+ + G + K + E+EL +S+ + +M+ A++EL
Sbjct: 442 LKQETQGLQKEK-ESREKELMGFSKSVNEARSKMDVAQSEL 481
Score = 48 (22.0 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 39/166 (23%), Positives = 72/166 (43%)
Query: 219 DKPN-EEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLI 277
DK EE++ IP I N++ +K KE K L++ +D L
Sbjct: 396 DKEKVEEFKSIPAKSNNIINETTTRNNAL-----EKEKEKEEKK-LKEV-MDSLKQETQG 448
Query: 278 LQ-EPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNE 336
LQ E ++ + L G + + E +++ + +++L AV+ L +E
Sbjct: 449 LQKEKESREKELMG-FSKSVNEARSKMDVAQSELDIYLSRHNTAVSQLTKAKEALIAASE 507
Query: 337 IYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKT 382
+ ER ++++ E K+ Q EQEL + ++K T E + K+
Sbjct: 508 TLK-ERKAAIRDI---EGKLPQTEQELKEKEKELQKLTQEETNFKS 549
Score = 44 (20.5 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 24/100 (24%), Positives = 46/100 (46%)
Query: 290 GKYDEERTEKL--TRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMK 347
GK + E ++L T V++ LKA + +L K +N +L+ C Q +
Sbjct: 853 GKVEAE-VKRLHNTIVEINNHKLKAQQDKLDK-IN-KQLDECASAITKA--QVAIKTADR 907
Query: 348 NLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTV 387
NL + + V + E+E+ + + T E++S + + V
Sbjct: 908 NLQKAQDSVLRTEKEIKDTEKEVDDLTAELKSLEDKAAEV 947
>UNIPROTKB|Q9NTJ3 [details] [associations]
symbol:SMC4 "Structural maintenance of chromosomes protein
4" species:9606 "Homo sapiens" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0051301
"cell division" evidence=IEA] [GO:0010032 "meiotic chromosome
condensation" evidence=IEA] [GO:0045132 "meiotic chromosome
segregation" evidence=IEA] [GO:0051383 "kinetochore organization"
evidence=IEA] [GO:0000796 "condensin complex" evidence=IDA;TAS]
[GO:0007076 "mitotic chromosome condensation" evidence=IDA]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0000070 "mitotic sister
chromatid segregation" evidence=TAS] [GO:0005524 "ATP binding"
evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
Reactome:REACT_115566 Reactome:REACT_21300
Pathway_Interaction_DB:aurora_b_pathway GO:GO:0051301 EMBL:CH471052
GO:GO:0006281 GO:GO:0006310 GO:GO:0007076 GO:GO:0000796
GO:GO:0007062 eggNOG:COG1196 KO:K06675 SUPFAM:SSF75553
EMBL:AC024221 OMA:IAIEFLT EMBL:AB019987 EMBL:AL136877 EMBL:AL833949
EMBL:AF092564 IPI:IPI00328298 IPI:IPI00411559 PIR:T46486
RefSeq:NP_001002800.1 RefSeq:NP_005487.3 UniGene:Hs.58992
ProteinModelPortal:Q9NTJ3 SMR:Q9NTJ3 IntAct:Q9NTJ3
MINT:MINT-5005675 STRING:Q9NTJ3 PhosphoSite:Q9NTJ3 DMDM:30173386
PaxDb:Q9NTJ3 PeptideAtlas:Q9NTJ3 PRIDE:Q9NTJ3 DNASU:10051
Ensembl:ENST00000344722 Ensembl:ENST00000357388
Ensembl:ENST00000360111 Ensembl:ENST00000462787 GeneID:10051
KEGG:hsa:10051 UCSC:uc003fdh.3 UCSC:uc010hwd.3 CTD:10051
GeneCards:GC03P160117 HGNC:HGNC:14013 HPA:HPA018259 HPA:HPA029449
MIM:605575 neXtProt:NX_Q9NTJ3 PharmGKB:PA37834 HOGENOM:HOG000184777
HOVERGEN:HBG106696 InParanoid:Q9NTJ3 OrthoDB:EOG4PZJ5V
PhylomeDB:Q9NTJ3 GenomeRNAi:10051 NextBio:37969 ArrayExpress:Q9NTJ3
Bgee:Q9NTJ3 CleanEx:HS_SMC4 Genevestigator:Q9NTJ3
GermOnline:ENSG00000113810 Uniprot:Q9NTJ3
Length = 1288
Score = 410 (149.4 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
Identities = 78/142 (54%), Positives = 105/142 (73%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF+ IIGPNGSGKSNVIDSMLFVFGYRA KIR+ KLSVL+H SD+ + C+V +HF +
Sbjct: 107 RFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIRSKKLSVLIHNSDEHKDIQSCTVEVHFQK 166
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
IIDK ++YE+IP ++ ++RTA DN+S Y ++GKK FK+V +LR HG+DL +NRFL
Sbjct: 167 IIDKEGDDYEVIPNSNFYVSRTACRDNTSVYHISGKKKTFKDVGNLLRSHGIDLDHNRFL 226
Query: 277 ILQEPIAKMEVLYGKYDEERTE 298
ILQ + ++ ++ K E E
Sbjct: 227 ILQGEVEQIAMMKPKGQTEHDE 248
Score = 152 (58.6 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 44/139 (31%), Positives = 72/139 (51%)
Query: 251 GKKVHFKEVAKVLRDH-GVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETD 309
G+ H + + + L D G LN +L ++E+L +E R EKL RV++VE +
Sbjct: 242 GQTEHDEGMLEYLEDIIGCGRLNEPIKVL---CRRVEIL----NEHRGEKLNRVKMVEKE 294
Query: 310 LKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLES 369
ALE E A+ FL LEN + RK N + QY Y K + E ET+ +++ ++ E
Sbjct: 295 KDALEGEKNIAIEFLTLENEIFRKKNHVCQYYIYELQKRIAEMETQKEKIHEDTKEINEK 354
Query: 370 IKKCTDEMESAKTELKTVE 388
++EM++ ++K E
Sbjct: 355 SNILSNEMKAKNKDVKDTE 373
Score = 121 (47.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNR 132
GEVEQI+MM PKG+TE + G+LEYLE+IIG R
Sbjct: 230 GEVEQIAMMKPKGQTEHDEGMLEYLEDIIGCGR 262
Score = 118 (46.6 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 125 EEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRF 158
E+I+G +KRF+ IIGPNGSGKSNVIDSMLF F
Sbjct: 98 EKILGPF-HKRFSCIIGPNGSGKSNVIDSMLFVF 130
Score = 64 (27.6 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
Identities = 20/98 (20%), Positives = 49/98 (50%)
Query: 278 LQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFL-ELENCVQRKHNE 336
LQ+ IA+ME K E+ E + ++ ++KA +++ L ++ ++ +
Sbjct: 330 LQKRIAEMETQKEKIHEDTKEINEKSNILSNEMKAKNKDVKDTEKKLNKITKFIEENKEK 389
Query: 337 IYQYE-RYVNMKNLGEHET-KVQQMEQELTANLESIKK 372
Q + V ++ +H T K +++E++L + E +++
Sbjct: 390 FTQLDLEDVQVREKLKHATSKAKKLEKQLQKDKEKVEE 427
Score = 62 (26.9 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 34/135 (25%), Positives = 60/135 (44%)
Query: 257 KEVAKVLRDHGVDL-LNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEP 315
K A+V R H + +NN L Q+ K++ + + DE +T+ Q+ +K +
Sbjct: 879 KVEAEVKRLHNTIVEINNHKLKAQQD--KLDKINKQLDE-CASAITKAQVA---IKTADR 932
Query: 316 ELRKAVNFLELENCVQRKHNEIYQYERYVN--MKNLGEHETKVQQMEQELTANLESIKKC 373
L+KA ++ V R EI E+ V+ L E K ++ + A ES+ +
Sbjct: 933 NLQKA------QDSVLRTEKEIKDTEKEVDDLTAELKSLEDKAAEVVKNTNAAEESLPEI 986
Query: 374 TDEMESAKTELKTVE 388
E + ELK ++
Sbjct: 987 QKEHRNLLQELKVIQ 1001
Score = 49 (22.3 bits), Expect = 4.3e-39, Sum P(2) = 4.3e-39
Identities = 23/93 (24%), Positives = 43/93 (46%)
Query: 295 ERTEKLT-RVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHE 353
E+ E L +V+ +E ++ A P+ +K E + + +++ + + V + H
Sbjct: 830 EQEEYLNVQVKELEANVLATAPDKKKQKLLEENVSAFKTEYDAVAEKAGKVEAEVKRLHN 889
Query: 354 TKVQQMEQELTAN---LESIKKCTDEMESAKTE 383
T V+ +L A L+ I K DE SA T+
Sbjct: 890 TIVEINNHKLKAQQDKLDKINKQLDECASAITK 922
Score = 48 (22.0 bits), Expect = 5.5e-39, Sum P(2) = 5.5e-39
Identities = 22/101 (21%), Positives = 47/101 (46%)
Query: 284 KMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERY 343
K+E K D+E+ E+ + ++ E R N LE E +++ ++ +
Sbjct: 413 KLEKQLQK-DKEKVEEFKSIPAKSNNI-INETTTRN--NALEKEK--EKEEKKLKEVMDS 466
Query: 344 VNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTEL 384
+ + G + K + E+EL +S+ + +M+ A++EL
Sbjct: 467 LKQETQGLQKEK-ESREKELMGFSKSVNEARSKMDVAQSEL 506
Score = 48 (22.0 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 39/166 (23%), Positives = 72/166 (43%)
Query: 219 DKPN-EEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLI 277
DK EE++ IP I N++ +K KE K L++ +D L
Sbjct: 421 DKEKVEEFKSIPAKSNNIINETTTRNNAL-----EKEKEKEEKK-LKEV-MDSLKQETQG 473
Query: 278 LQ-EPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNE 336
LQ E ++ + L G + + E +++ + +++L AV+ L +E
Sbjct: 474 LQKEKESREKELMG-FSKSVNEARSKMDVAQSELDIYLSRHNTAVSQLTKAKEALIAASE 532
Query: 337 IYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKT 382
+ ER ++++ E K+ Q EQEL + ++K T E + K+
Sbjct: 533 TLK-ERKAAIRDI---EGKLPQTEQELKEKEKELQKLTQEETNFKS 574
Score = 44 (20.5 bits), Expect = 1.5e-38, Sum P(2) = 1.5e-38
Identities = 24/100 (24%), Positives = 46/100 (46%)
Query: 290 GKYDEERTEKL--TRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMK 347
GK + E ++L T V++ LKA + +L K +N +L+ C Q +
Sbjct: 878 GKVEAE-VKRLHNTIVEINNHKLKAQQDKLDK-IN-KQLDECASAITKA--QVAIKTADR 932
Query: 348 NLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTV 387
NL + + V + E+E+ + + T E++S + + V
Sbjct: 933 NLQKAQDSVLRTEKEIKDTEKEVDDLTAELKSLEDKAAEV 972
>UNIPROTKB|E1BMZ9 [details] [associations]
symbol:SMC4 "Structural maintenance of chromosomes protein"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0051383 "kinetochore organization" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0045132
"meiotic chromosome segregation" evidence=IEA] [GO:0010032 "meiotic
chromosome condensation" evidence=IEA] [GO:0007076 "mitotic
chromosome condensation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000796 "condensin complex" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0006281
GO:GO:0006310 GO:GO:0007076 GO:GO:0000796 GO:GO:0007062
GeneTree:ENSGT00580000081617 SUPFAM:SSF75553 OMA:IAIEFLT
EMBL:DAAA02002417 EMBL:DAAA02002418 IPI:IPI00703154
Ensembl:ENSBTAT00000007705 ArrayExpress:E1BMZ9 Uniprot:E1BMZ9
Length = 1288
Score = 418 (152.2 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 79/142 (55%), Positives = 107/142 (75%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF+ IIGPNGSGKSNVIDSMLFVFGYRA KIR+ KLSVL+H SD+ + C+VA+HF +
Sbjct: 107 RFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIRSKKLSVLIHNSDEHKDIQSCTVAVHFQK 166
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
IIDK ++YE+IP ++ ++RTA+ DN+S Y ++GKK FK+V +LR HG+DL +NRFL
Sbjct: 167 IIDKEGDDYEVIPNSNFYVSRTAYRDNTSVYHVSGKKTTFKDVGILLRSHGIDLDHNRFL 226
Query: 277 ILQEPIAKMEVLYGKYDEERTE 298
ILQ + ++ ++ K E E
Sbjct: 227 ILQGEVEQIAMMKPKGQTEHDE 248
Score = 151 (58.2 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 45/139 (32%), Positives = 72/139 (51%)
Query: 251 GKKVHFKEVAKVLRDH-GVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETD 309
G+ H + + + L D G LN +L ++E+L +E R EKL RV++VE +
Sbjct: 242 GQTEHDEGMLEYLEDIIGSGRLNEPIKVL---CRRVEIL----NEHRGEKLNRVKMVEKE 294
Query: 310 LKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLES 369
ALE E A+ FL LEN + RK N + QY Y K + E ET+ +++ ++ E
Sbjct: 295 KDALEGEKNIAIEFLTLENEIFRKKNHVCQYYIYDLQKRIAEMETQKEKINEDTKEINEK 354
Query: 370 IKKCTDEMESAKTELKTVE 388
++EM++ +K VE
Sbjct: 355 SNILSNEMKAKNKAVKDVE 373
Score = 123 (48.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 23/33 (69%), Positives = 29/33 (87%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNR 132
GEVEQI+MM PKG+TE + G+LEYLE+IIG+ R
Sbjct: 230 GEVEQIAMMKPKGQTEHDEGMLEYLEDIIGSGR 262
Score = 118 (46.6 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 125 EEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRF 158
E+I+G +KRF+ IIGPNGSGKSNVIDSMLF F
Sbjct: 98 EKILGPF-HKRFSCIIGPNGSGKSNVIDSMLFVF 130
Score = 79 (32.9 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 55/260 (21%), Positives = 114/260 (43%)
Query: 138 AIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSN----VIDSMLFVFG-YRASKIRANKL 192
A++ P G + + + ML IIG SG+ N V+ + + +R K+ N++
Sbjct: 236 AMMKPKGQTEHD--EGMLEYLEDIIG---SGRLNEPIKVLCRRVEILNEHRGEKL--NRV 288
Query: 193 SVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYD-NSSYYTLNG 251
++ + D + G ++AI F + E EI + + + YD +
Sbjct: 289 KMVEKEKDALEGEK--NIAIEFLTL------ENEIFRKKN-HVCQYYIYDLQKRIAEMET 339
Query: 252 KKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKMEVLYGK---YDEERTEKLTRVQLVET 308
+K E K + + ++L+N + + +E K + EE EK T++ L
Sbjct: 340 QKEKINEDTKEINEKS-NILSNEMKAKNKAVKDVEKKLNKITKFIEENKEKFTKLDL--E 396
Query: 309 DLKALEPELRKAVNFLE-LENCVQRKHNEIYQYERY-VNMKNL-GEHETKVQQMEQELTA 365
D++ E +L+ A + + LE +Q+ ++ +++ +N+ E TK +E+E
Sbjct: 397 DVQVRE-KLKHATSKAKKLEKQLQKDKEKVEEFKSIPTKSENIIRETTTKNNALEKEKEK 455
Query: 366 NLESIKKCTDEMESAKTELK 385
E +K+ D ++ +L+
Sbjct: 456 EEEKLKEVMDSLKQETQDLQ 475
Score = 53 (23.7 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 16/74 (21%), Positives = 36/74 (48%)
Query: 298 EKLTRVQLVETDLKALEPELRKAV-NFLELENCVQRKHNEIYQYERYVNMK------NLG 350
+K V D +A PE++K N L+ +Q + + + + +K ++G
Sbjct: 967 DKAAEVVKNTNDAEASLPEIQKEHRNLLQELKVIQENEHALQKDALSIKLKLEQIDGHIG 1026
Query: 351 EHETKVQQMEQELT 364
EH +K++ ++E++
Sbjct: 1027 EHNSKIKYWQREIS 1040
Score = 47 (21.6 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 32/132 (24%), Positives = 58/132 (43%)
Query: 257 KEVAKVLRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPE 316
K+ KVL ++ V+ + + E K+E + +R + V++ LKA + +
Sbjct: 853 KKQQKVLEEN-VNTFKTEYNSVAERAGKVEA-----EVKRLHNII-VEINNHKLKAQQDK 905
Query: 317 LRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDE 376
L K +N +L+ C Q +NL + + V + E+E IK E
Sbjct: 906 LDK-IN-KQLDECASAITKA--QVAIKTADRNLKKAQDNVLRTEKE-------IKDTEKE 954
Query: 377 MESAKTELKTVE 388
++ TELK++E
Sbjct: 955 VDDLTTELKSLE 966
Score = 44 (20.5 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
Identities = 20/107 (18%), Positives = 50/107 (46%)
Query: 278 LQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEI 337
L+ +K + L + +++ EK+ + + T + + E N LE E +++ ++
Sbjct: 404 LKHATSKAKKLEKQLQKDK-EKVEEFKSIPTKSENIIRETTTKNNALEKEK--EKEEEKL 460
Query: 338 YQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTEL 384
+ + + + K + E+EL +S+ + +M+ A++EL
Sbjct: 461 KEVMDSLKQETQDLQKEK-ESREKELMDFSKSVNEARSKMDVAQSEL 506
Score = 44 (20.5 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
Identities = 28/123 (22%), Positives = 49/123 (39%)
Query: 277 ILQEPIAKMEVLYGKYDEERTEKLTRV--------QLVETDLKALEPELR---KAVNFLE 325
I++E K L K E+ EKL V Q ++ + ++ E EL K+VN
Sbjct: 438 IIRETTTKNNALE-KEKEKEEEKLKEVMDSLKQETQDLQKEKESREKELMDFSKSVNEAR 496
Query: 326 LENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELK 385
+ V + +IY + LG+ + + + L +I ++ + ELK
Sbjct: 497 SKMDVAQSELDIYLRRHNTAVSQLGKAKEALMAASETLKERKAAIGDIEAKLPQTEHELK 556
Query: 386 TVE 388
E
Sbjct: 557 EKE 559
>UNIPROTKB|F1SH51 [details] [associations]
symbol:SMC4 "Structural maintenance of chromosomes protein"
species:9823 "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA]
[GO:0051383 "kinetochore organization" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0045132
"meiotic chromosome segregation" evidence=IEA] [GO:0010032 "meiotic
chromosome condensation" evidence=IEA] [GO:0007076 "mitotic
chromosome condensation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000796 "condensin complex" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0006281
GO:GO:0006310 GO:GO:0007076 GO:GO:0000796 GO:GO:0007062
GeneTree:ENSGT00580000081617 KO:K06675 SUPFAM:SSF75553 OMA:IAIEFLT
CTD:10051 EMBL:CU466375 RefSeq:XP_001927540.1 UniGene:Ssc.7850
Ensembl:ENSSSCT00000012842 GeneID:100152361 KEGG:ssc:100152361
Uniprot:F1SH51
Length = 1288
Score = 412 (150.1 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 77/142 (54%), Positives = 105/142 (73%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF+ IIGPNGSGKSNVIDSMLFVFGYRA KIR+ KLSVL+H SD+ + C+V +HF +
Sbjct: 107 RFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIRSKKLSVLIHNSDEHKDIQSCTVEVHFQK 166
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
IIDK +YE++P ++ ++RTA+ DN+S Y ++GKK FK+V +LR HG+DL +NRFL
Sbjct: 167 IIDKEGNDYEVVPNSNFYVSRTAYRDNTSVYHISGKKKTFKDVGNLLRSHGIDLDHNRFL 226
Query: 277 ILQEPIAKMEVLYGKYDEERTE 298
ILQ + ++ ++ K E E
Sbjct: 227 ILQGEVEQIAMMKPKGQTEHDE 248
Score = 151 (58.2 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 45/139 (32%), Positives = 72/139 (51%)
Query: 251 GKKVHFKEVAKVLRDH-GVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETD 309
G+ H + + + L D G LN +L ++E+L +E R EKL RV++VE +
Sbjct: 242 GQTEHDEGMLEYLEDIIGSGRLNEPIKVL---CRRVEIL----NEHRGEKLNRVKMVEKE 294
Query: 310 LKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLES 369
ALE E A+ FL LEN + RK N + QY Y K + E ET+ +++ ++ E
Sbjct: 295 KDALEGEKNIAIEFLTLENEIFRKKNHVCQYYIYDLQKRIAEMETQKEKIHEDTKEINEK 354
Query: 370 IKKCTDEMESAKTELKTVE 388
++EM++ +K VE
Sbjct: 355 SNILSNEMKAKNKAVKDVE 373
Score = 123 (48.4 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 23/33 (69%), Positives = 29/33 (87%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNR 132
GEVEQI+MM PKG+TE + G+LEYLE+IIG+ R
Sbjct: 230 GEVEQIAMMKPKGQTEHDEGMLEYLEDIIGSGR 262
Score = 118 (46.6 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 125 EEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRF 158
E+I+G +KRF+ IIGPNGSGKSNVIDSMLF F
Sbjct: 98 EKILGPF-HKRFSCIIGPNGSGKSNVIDSMLFVF 130
Score = 67 (28.6 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 35/135 (25%), Positives = 61/135 (45%)
Query: 257 KEVAKVLRDHGVDL-LNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEP 315
K A+V R H + + +NN L Q+ K++ + + DE +T+ Q+ +K +
Sbjct: 879 KVEAEVKRLHNIIVEINNHKLKAQQD--KLDKINKQLDE-CASAITKAQVA---IKTADR 932
Query: 316 ELRKAVNFLELENCVQRKHNEIYQYERYVN--MKNLGEHETKVQQMEQELTANLESIKKC 373
L+KA ++ V R EI E+ V+ L E K ++ + A ES+ +
Sbjct: 933 NLKKA------QDSVFRTEKEIKDTEKEVDDLTTELKSLEDKAAEVIKNTNAAEESLPEI 986
Query: 374 TDEMESAKTELKTVE 388
E S ELK ++
Sbjct: 987 QKEHRSLLQELKVIQ 1001
Score = 51 (23.0 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 23/101 (22%), Positives = 47/101 (46%)
Query: 284 KMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERY 343
K+E K D+E+ E+ + ++ E R N LE E +++ ++ +
Sbjct: 413 KLEKQLQK-DKEKVEEFKSIPAKSENI-ITETTTRN--NALEKEK--EKEEKKLKEVMDS 466
Query: 344 VNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTEL 384
+ + G + K Q E+EL +S+ + +M+ A++EL
Sbjct: 467 LKQETQGLQKEKESQ-EKELMGFSKSVNEARSKMDVAQSEL 506
Score = 47 (21.6 bits), Expect = 4.3e-39, Sum P(2) = 4.3e-39
Identities = 13/78 (16%), Positives = 37/78 (47%)
Query: 293 DEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMK----- 347
+++ E + E L ++ E R + L++ +Q + + + + +K
Sbjct: 966 EDKAAEVIKNTNAAEESLPEIQKEHRSLLQELKV---IQENEHALQKDALSIKLKLEQID 1022
Query: 348 -NLGEHETKVQQMEQELT 364
++GEH +K++ ++E++
Sbjct: 1023 GHIGEHNSKIKYWQKEIS 1040
Score = 43 (20.2 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 28/102 (27%), Positives = 48/102 (47%)
Query: 290 GKYDEERTEKLTRVQLVETD---LKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNM 346
GK + E ++L + +VE + LKA + +L K +N +L+ C Q
Sbjct: 878 GKVEAE-VKRLHNI-IVEINNHKLKAQQDKLDK-IN-KQLDECASAITKA--QVAIKTAD 931
Query: 347 KNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
+NL + + V + E+E IK E++ TELK++E
Sbjct: 932 RNLKKAQDSVFRTEKE-------IKDTEKEVDDLTTELKSLE 966
>ZFIN|ZDB-GENE-020419-21 [details] [associations]
symbol:smc4 "structural maintenance of chromosomes
4" species:7955 "Danio rerio" [GO:0030261 "chromosome condensation"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007062
"sister chromatid cohesion" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
ZFIN:ZDB-GENE-020419-21 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062 KO:K06675
SUPFAM:SSF75553 CTD:10051 HOGENOM:HOG000184777 HOVERGEN:HBG106696
HSSP:Q9X0R4 EMBL:AY099521 IPI:IPI00504040 RefSeq:NP_775360.1
UniGene:Dr.77769 ProteinModelPortal:Q8JGS5 STRING:Q8JGS5
PRIDE:Q8JGS5 GeneID:192332 KEGG:dre:192332 InParanoid:Q8JGS5
NextBio:20797168 ArrayExpress:Q8JGS5 Bgee:Q8JGS5 Uniprot:Q8JGS5
Length = 1289
Score = 404 (147.3 bits), Expect = 7.2e-39, Sum P(2) = 7.2e-39
Identities = 83/168 (49%), Positives = 115/168 (68%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF+ IIGPNGSGKSNVIDSMLFVFGYRA KIR+ KLSVL+H SD + C+V +HF +
Sbjct: 106 RFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIRSKKLSVLIHSSDGHPDIQSCTVEVHFQK 165
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
IIDK ++Y++IP + +ARTA DNSS Y +N KK FK+V +LR HG+DL +NRFL
Sbjct: 166 IIDKEGDDYDVIPDSSFYVARTAGKDNSSAYYINTKKATFKDVGTLLRSHGIDLDHNRFL 225
Query: 277 ILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFL 324
ILQ + ++ ++ K E E + ++ +E + + L++ +N L
Sbjct: 226 ILQGEVEQIAMMKPKGQTEHDEGM--LEYLEDIIGSCR--LKEPINIL 269
Score = 153 (58.9 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 38/111 (34%), Positives = 62/111 (55%)
Query: 278 LQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEI 337
L+EPI + +E+R EKL RV++VE + ALE E KAV+FL LEN + +K N +
Sbjct: 262 LKEPINILCRRVEALNEQRGEKLNRVKMVEKEKSALEGEKNKAVDFLNLENDIFKKRNLL 321
Query: 338 YQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
+ + + E + QQ++++ + + T+EM+S +LK VE
Sbjct: 322 CHFYVHDLQSRVSVKEAEKQQIQEDTKDLSDKSSQLTEEMKSKNEDLKAVE 372
Score = 124 (48.7 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYK 134
GEVEQI+MM PKG+TE + G+LEYLE+IIG+ R K
Sbjct: 229 GEVEQIAMMKPKGQTEHDEGMLEYLEDIIGSCRLK 263
Score = 119 (46.9 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 125 EEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRF 158
E+I+G +KRF+ IIGPNGSGKSNVIDSMLF F
Sbjct: 97 EQILGPF-HKRFSCIIGPNGSGKSNVIDSMLFVF 129
Score = 58 (25.5 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 23/98 (23%), Positives = 45/98 (45%)
Query: 295 ERTEKLTR-VQLVETDLKALEPELRKAVNFLEL--ENCVQRKHNEIYQYERYVNMKNLGE 351
+++ +LT ++ DLKA+E +L K ++E E Q ++ E+ + K+ +
Sbjct: 352 DKSSQLTEEMKSKNEDLKAVEKKLTKLTKYIESQKEKFTQLDLQDVEVREKLKHTKSKTK 411
Query: 352 HETKVQQMEQELTANLESI----KKCTDEMESAKTELK 385
K Q +QE + + +K E + K EL+
Sbjct: 412 KLQKQLQKDQEKLEEVRGVPASSEKIITEASAQKEELE 449
Score = 57 (25.1 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 41/182 (22%), Positives = 79/182 (43%)
Query: 218 IDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLI 277
I+ E++ + D+E+ + S L K++ K+ K+ GV + + I
Sbjct: 382 IESQKEKFTQLDLQDVEVREKLKHTKSKTKKLQ-KQLQ-KDQEKLEEVRGVPASSEK--I 437
Query: 278 LQEPIAKMEVLYGKYDEERTEKLTRV-QLVETDLKALEPEL-RKAVNFLELENCVQ--RK 333
+ E A+ E L K E +KL V + ++ + K L+ + +K LEL V R
Sbjct: 438 ITEASAQKEELEKKKLLEE-QKLAEVMESLKEETKGLQDDKEKKEKELLELSKSVNETRS 496
Query: 334 HNEIYQYER--YVNMKN-----LGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKT 386
++ Q E Y++ N L + ++ +Q+ L +IK ++ + + +LK
Sbjct: 497 RMDVAQSELDIYLSQHNTAINQLNQAKSALQETVDTLRERRAAIKDLQVKIPAQEEQLKK 556
Query: 387 VE 388
E
Sbjct: 557 DE 558
Score = 54 (24.1 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 38/169 (22%), Positives = 71/169 (42%)
Query: 232 DLEIA-RTAFYDNSSY--YTLNGKKVHFKEVAKVLRDHG----VDLLNNRFL--ILQEPI 282
DLE A R AF + + TL G+ + E A + G ++ + F + QE +
Sbjct: 719 DLEQATRVAFQKDKRWRVVTLQGQII---EQAGTMTGGGGRVMKGMMGSSFCADVTQEQL 775
Query: 283 AKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLE-----LENCVQRK-HNE 336
KME K + + R +E + ELR N LE +++ +++ H +
Sbjct: 776 DKMESALNKEVTQLQDCQKRKNQLEEKVHKARCELRDMKNTLEKYTATIQSLTEQELHLK 835
Query: 337 IYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELK 385
+ N+ + K +QME+ L A + + +++ + E+K
Sbjct: 836 PQIKDLEANVIAAAPDKAKQKQMEKSLEAYRKDFEAASNKAGKVEAEVK 884
Score = 53 (23.7 bits), Expect = 7.2e-39, Sum P(2) = 7.2e-39
Identities = 9/37 (24%), Positives = 25/37 (67%)
Query: 347 KNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTE 383
+NL + E V ++EQE++ N + +++ T++++ + +
Sbjct: 931 RNLKKSEDGVSRLEQEISENEKLMEELTEQLKKLEEQ 967
Score = 48 (22.0 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 22/98 (22%), Positives = 42/98 (42%)
Query: 293 DEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVN-----MK 347
D+E+ EK +L+E E R V EL+ + + + I Q + + +
Sbjct: 476 DKEKKEK----ELLELSKSVNETRSRMDVAQSELDIYLSQHNTAINQLNQAKSALQETVD 531
Query: 348 NLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELK 385
L E ++ ++ ++ A E +KK E+E + K
Sbjct: 532 TLRERRAAIKDLQVKIPAQEEQLKKDERELEQISEQDK 569
>POMBASE|SPBC146.03c [details] [associations]
symbol:cut3 "condensin complex subunit Cut3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000796 "condensin
complex" evidence=IDA] [GO:0000939 "condensed chromosome inner
kinetochore" evidence=IGI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0007076
"mitotic chromosome condensation" evidence=IMP] [GO:0034613
"cellular protein localization" evidence=IMP] InterPro:IPR024704
InterPro:IPR010935 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 PomBase:SPBC146.03c Pfam:PF02463 GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 GO:GO:0034613 GO:GO:0051301
EMBL:CU329671 GO:GO:0006281 GenomeReviews:CU329671_GR GO:GO:0006310
GO:GO:0007076 GO:GO:0000939 GO:GO:0000796 GO:GO:0007062 KO:K06675
SUPFAM:SSF75553 OMA:IAIEFLT HOGENOM:HOG000184777 EMBL:D30788
EMBL:AB027959 PIR:S51622 RefSeq:NP_595392.1
ProteinModelPortal:P41004 DIP:DIP-35048N IntAct:P41004
STRING:P41004 EnsemblFungi:SPBC146.03c.1 GeneID:2539817
KEGG:spo:SPBC146.03c OrthoDB:EOG4WM82V NextBio:20800966
Uniprot:P41004
Length = 1324
Score = 300 (110.7 bits), Expect = 2.7e-36, Sum P(3) = 2.7e-36
Identities = 61/132 (46%), Positives = 92/132 (69%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQI 217
F++I+GPNGSGKSNVID++LFVFG+RASK+R +K S L+HKS + C V I F ++
Sbjct: 150 FSSIVGPNGSGKSNVIDALLFVFGFRASKLRQSKASALIHKSATHPSLDSCDVEITFKEV 209
Query: 218 IDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLI 277
N ++ + G++L + RTA+ +N+S Y +NG + F V+ +L++ G+DL + RFLI
Sbjct: 210 ----NSDFTYVDGSELTVRRTAYKNNTSKYFVNGVESSFSAVSNLLKEKGIDLNHKRFLI 265
Query: 278 LQ---EPIAKME 286
LQ E IA+M+
Sbjct: 266 LQGEVESIAQMK 277
Score = 112 (44.5 bits), Expect = 8.2e-10, Sum P(3) = 8.2e-10
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVID 152
GEVE I+ M P+ +E + GLLEYLE+IIGT++YK II N SN D
Sbjct: 268 GEVESIAQMKPRAISEGDDGLLEYLEDIIGTSKYK---PIIEENMQELSNSDD 317
Score = 99 (39.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 30/87 (34%), Positives = 46/87 (52%)
Query: 78 TKIVAFNFKS---YAGYVTLGPFNTGEVEQISMMPPKGKTE--KETGLLEYL-EEIIGTN 131
+K FN +S + + T E E ++PP+ + T Y +I+G
Sbjct: 88 SKSTGFNERSSQLVSEFTTTEDIENCE-ETTQVLPPRLVVYELRLTNFKSYAGTQIVGPF 146
Query: 132 RYKRFNAIIGPNGSGKSNVIDSMLFRF 158
+ F++I+GPNGSGKSNVID++LF F
Sbjct: 147 -HPSFSSIVGPNGSGKSNVIDALLFVF 172
Score = 87 (35.7 bits), Expect = 2.7e-36, Sum P(3) = 2.7e-36
Identities = 26/97 (26%), Positives = 52/97 (53%)
Query: 293 DEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYV--NMKNLG 350
D+ EK +R++LV ++ LE ++FL+ EN + K N++Y+ Y N K L
Sbjct: 316 DDICAEKESRLKLVLSEKAKLEDSKNSVLSFLKDENELFMKQNQLYRTILYETRNKKTLV 375
Query: 351 EHETKVQQMEQELTANLESIKKCTDEMESAKTELKTV 387
++ + +E +L A+LE ++ ++ E+K++
Sbjct: 376 QN--LLNSLEGKLQAHLEKFEQTERDISEKNEEVKSL 410
Score = 71 (30.1 bits), Expect = 2.7e-36, Sum P(3) = 2.7e-36
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 73 PRLIITKIVAFNFKSYAGYVTLGPFN 98
PRL++ ++ NFKSYAG +GPF+
Sbjct: 122 PRLVVYELRLTNFKSYAGTQIVGPFH 147
Score = 58 (25.5 bits), Expect = 6.7e-07, Sum P(3) = 6.7e-07
Identities = 36/173 (20%), Positives = 77/173 (44%)
Query: 226 EIIPGTDLEIARTAFYDNSSYYTLNGKK---VHFKEVAKVLRDHGVDLLN--NRFLILQE 280
E IP +LEI++ ++ + G++ + K K +R++ N N+ + +
Sbjct: 844 ERIPSAELEISKLQLDVSACDRLVAGEERRILQLKSDLKSIRNNNERKRNLQNKISNMDK 903
Query: 281 PIAKMEVLY-GKYDEERT--EKLTRVQLVETDL-KALEPELRKAVNFLE--LENC-VQRK 333
+ + + G E +T +K+ + + + K+ +L + + F++ L ++K
Sbjct: 904 EVEAININNEGLVTEIKTLQDKIMEIGGIRYRIQKSKVDDLHEQLKFVKDKLNKMSFKKK 963
Query: 334 HNEIYQYERYVNMKNL-GEHETKVQQMEQELTANLESIKKCTDEMESAKTELK 385
NE V + NL E++T + + L L+S+ K DE +S E +
Sbjct: 964 KNEQRSQSFQVELSNLTSEYDTTTESIAT-LKTELQSLNKYVDEHKSRLREFE 1015
Score = 57 (25.1 bits), Expect = 8.4e-07, Sum P(3) = 8.4e-07
Identities = 24/104 (23%), Positives = 51/104 (49%)
Query: 264 RDHGVDL--LNNRFLILQE--PIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRK 319
R H +L LN RF + E P A++E+ + D ++L + E + L+ +L+
Sbjct: 826 RQHLSELESLNQRFTEISERIPSAELEISKLQLDVSACDRLVAGE--ERRILQLKSDLKS 883
Query: 320 AVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQEL 363
N E + +Q K + + + +N+ N G T+++ ++ ++
Sbjct: 884 IRNNNERKRNLQNKISNMDKEVEAININNEGL-VTEIKTLQDKI 926
Score = 56 (24.8 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 32/142 (22%), Positives = 60/142 (42%)
Query: 248 TLNGK-KVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLV 306
+L GK + H ++ + RD + N L+E AK++ E++T + Q V
Sbjct: 381 SLEGKLQAHLEKFEQTERD--ISEKNEEVKSLREKAAKVK--NDCTSEKKTRQSYEQQTV 436
Query: 307 --ETDLKAL---EPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQ 361
E LK L E +L+K++ L E + + + + ++QQ E
Sbjct: 437 KIEEQLKFLLNKEKKLKKSIEALSFEKSEAENSLSSHDIDSQKLNSEIADLSLRLQQEEL 496
Query: 362 ELTANLESIKKCTDEMESAKTE 383
L +S++ T+ + +A E
Sbjct: 497 SLDDIRKSLQGKTEGISNAIEE 518
Score = 41 (19.5 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 20/99 (20%), Positives = 46/99 (46%)
Query: 268 VDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELE 327
+D+L N+ + I +E D+ R + ++ + LK L +L+ ++
Sbjct: 544 LDMLLNKE---NDLINDVESSQSSLDKLRNDAEENRNILSSKLKVLS-DLKGEKK--DVS 597
Query: 328 NCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTAN 366
++RK ++ R NL + TK+++M+ L+++
Sbjct: 598 KNIERKKETVHNTYR-----NLMSNRTKLEEMKASLSSS 631
Score = 41 (19.5 bits), Expect = 3.2e-05, Sum P(3) = 3.2e-05
Identities = 33/170 (19%), Positives = 78/170 (45%)
Query: 220 KPNEEYEIIPGTDLEIAR-TAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDL--LNNRFL 276
K NE+ +E++ T+ YD ++ ++ K + + K + +H L N
Sbjct: 963 KKNEQRS--QSFQVELSNLTSEYDTTTE-SIATLKTELQSLNKYVDEHKSRLREFENALW 1019
Query: 277 ILQEPIAKMEVLYGKYDEERTE--KLTRVQLVETDLKALEPELRKAVN----FLELENCV 330
+ I ++ V + +++ ++ K R++L E ++ L + N +L+L + +
Sbjct: 1020 DINSSIDEL-VKFIEFESKQMNSVKAERIEL-ENQIQEQRTALSEVGNNENKYLKLMSNL 1077
Query: 331 QRKHNEIYQYERYVNMKNLGEH-ETKVQQMEQ-ELTANLESIKKCTDEME 378
+ HN ++ E+ E ++ +++ EL +N+ +KK T++ E
Sbjct: 1078 -KLHNLTEFCDQTTMDSTFPEYSEDELSSVDKSELVSNISVLKKKTEDRE 1126
Score = 40 (19.1 bits), Expect = 4.1e-05, Sum P(3) = 4.1e-05
Identities = 23/131 (17%), Positives = 60/131 (45%)
Query: 261 KVLRDHGVDLLNNRFLILQEPIAKM-EVLYGKYDEERTEKLT-RVQLVETDLKALEPELR 318
K L+D +++ R+ I + + + E L K+ +++ K++ + + E ++ + EL
Sbjct: 920 KTLQDKIMEIGGIRYRIQKSKVDDLHEQL--KFVKDKLNKMSFKKKKNEQRSQSFQVELS 977
Query: 319 KAVNFLELEN-CVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEM 377
+ + + E+ +YV+ EH++++++ E L SI + +
Sbjct: 978 NLTSEYDTTTESIATLKTELQSLNKYVD-----EHKSRLREFENALWDINSSIDELVKFI 1032
Query: 378 ESAKTELKTVE 388
E ++ +V+
Sbjct: 1033 EFESKQMNSVK 1043
Score = 39 (18.8 bits), Expect = 2.6e-31, Sum P(3) = 2.6e-31
Identities = 20/124 (16%), Positives = 57/124 (45%)
Query: 265 DHGVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFL 324
D V L + R+ ++ ++++E L ++ TE R+ E ++ L+ ++
Sbjct: 815 DKQVQLEDTRY---RQHLSELESLNQRF----TEISERIPSAELEISKLQLDVSAC---- 863
Query: 325 ELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTEL 384
+ V + I Q + ++K++ + + + ++ +++ + ++ E TE+
Sbjct: 864 --DRLVAGEERRILQLKS--DLKSIRNNNERKRNLQNKISNMDKEVEAININNEGLVTEI 919
Query: 385 KTVE 388
KT++
Sbjct: 920 KTLQ 923
>ASPGD|ASPL0000075987 [details] [associations]
symbol:AN4597 species:162425 "Emericella nidulans"
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0034613 "cellular protein
localization" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000796 "condensin complex" evidence=IEA] [GO:0000939
"condensed chromosome inner kinetochore" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 EMBL:BN001303
EMBL:AACD01000079 GO:GO:0007062 eggNOG:COG1196 KO:K06675
SUPFAM:SSF75553 OMA:IAIEFLT HOGENOM:HOG000184777 OrthoDB:EOG4WM82V
RefSeq:XP_662201.1 ProteinModelPortal:Q5B4D3 STRING:Q5B4D3
EnsemblFungi:CADANIAT00005839 GeneID:2872396 KEGG:ani:AN4597.2
Uniprot:Q5B4D3
Length = 1476
Score = 363 (132.8 bits), Expect = 3.2e-34, Sum P(2) = 3.2e-34
Identities = 82/205 (40%), Positives = 124/205 (60%)
Query: 145 SGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGG 204
+GK V+ F++++GPNGSGKSNVID++LFVFG+RASK+R K+S L+H S
Sbjct: 259 AGKQ-VVGPFHASFSSVVGPNGSGKSNVIDALLFVFGFRASKMRQGKISALIHNSANHPN 317
Query: 205 VSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLR 264
+ C V ++F +IID P E+E++P + L I+R AF +N+S Y +NGK+ +F V +LR
Sbjct: 318 LPFCEVEVYFQEIIDLPGGEHEVVPDSQLIISRKAFKNNTSKYYMNGKETNFTAVTTLLR 377
Query: 265 DHGVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRV--QLVETDLKALEPELRKAVN 322
D G+DL + RFLILQ + + + K E + L ++ T K +P + +A
Sbjct: 378 DRGIDLDHKRFLILQGEVESIAQMKPKAANEHEDGLLEYLEDIIGTS-KYKQP-IEEAAT 435
Query: 323 FLELEN--CVQRKHNEIYQYERYVN 345
LE N CV+ K+N + E+ N
Sbjct: 436 ELEALNDVCVE-KNNRVQHVEKEKN 459
Score = 120 (47.3 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 23/36 (63%), Positives = 28/36 (77%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKR 135
GEVE I+ M PK E E GLLEYLE+IIGT++YK+
Sbjct: 393 GEVESIAQMKPKAANEHEDGLLEYLEDIIGTSKYKQ 428
Score = 85 (35.0 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 28/92 (30%), Positives = 46/92 (50%)
Query: 279 QEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIY 338
++PI + ++ EK RVQ VE + AL + KA+ +L EN + +K + +Y
Sbjct: 427 KQPIEEAATELEALNDVCVEKNNRVQHVEKEKNALVDKKDKALAYLRDENELAQKQSALY 486
Query: 339 QYERYVN--MKNLGEHETKVQQMEQELTANLE 368
Q Y++ NL E + QM++ L LE
Sbjct: 487 QI--YIDECADNLRVTEEAILQMQELLNLELE 516
Score = 72 (30.4 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 27/100 (27%), Positives = 50/100 (50%)
Query: 291 KYDEERTEKLTRVQLVETDLKALEPELRKA-VNFLELENCVQRKHNEIYQYERYVNMKNL 349
KYD+E + + + + K LE + A + E ++ V+R H+E + + K
Sbjct: 555 KYDKETVKFEEKKKFLVGKQKKLEKAMTSARLAASECQSLVKR-HSEAIENKS----KET 609
Query: 350 GEHETKVQQMEQELTANLESIKKCTDEM-ESAKTELKTVE 388
++E +V+ EQELT ES+K T + + + K++E
Sbjct: 610 ADYENEVEHEEQELTKIRESLKGKTQGLSDQIAAKQKSLE 649
Score = 60 (26.2 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 16/78 (20%), Positives = 39/78 (50%)
Query: 311 KALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESI 370
K+LEP K +N + E V + +I + + L E ++K+ +E+ + E +
Sbjct: 646 KSLEPWDEK-INKKQSELAVAQSELDILKEKSNAGAVLLEEAQSKITSIEETIARKEEDL 704
Query: 371 KKCTDEMESAKTELKTVE 388
++C + + + E++ ++
Sbjct: 705 QECKTQRSTLEDEVEQLQ 722
Score = 59 (25.8 bits), Expect = 6.1e-05, Sum P(3) = 6.1e-05
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 311 KALEPELRKAVNFL--ELENC-VQRKHNE--IYQYE--RYVNMKNLGEHETKVQQMEQEL 363
KA L++ ++ L E+ N V R NE I ++E R K L ++Q++ +++
Sbjct: 1063 KAKVDGLKEQISLLSEEISNAEVARSKNEKLIKKHENARAEAEKELANVAEELQKLNEDV 1122
Query: 364 T--AN-----LESIKKCTDEMESAKTELKTVE 388
AN E + + D +ES K ELKT++
Sbjct: 1123 ANQANDASGWKEKVDEAQDALESKKAELKTMK 1154
Score = 52 (23.4 bits), Expect = 3.2e-34, Sum P(2) = 3.2e-34
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 341 ERYVNMKN-LGEHETKVQQMEQELTANLES-IKKCTDEMESAKTELKTV 387
E+ V M++ L E E K Q QE +ES +++ T+E+ A+T+++ +
Sbjct: 934 EQLVQMESDLEEMERKYQHF-QEKQRRVESALREKTEEIPRAETKIQKI 981
Score = 43 (20.2 bits), Expect = 6.1e-05, Sum P(3) = 6.1e-05
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 279 QEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRK 319
Q I +E + +E+ E T+ +E +++ L+ +L+K
Sbjct: 687 QSKITSIEETIARKEEDLQECKTQRSTLEDEVEQLQHDLKK 727
>FB|FBgn0015391 [details] [associations]
symbol:glu "gluon" species:7227 "Drosophila melanogaster"
[GO:0007076 "mitotic chromosome condensation" evidence=ISS;NAS;IMP]
[GO:0000796 "condensin complex" evidence=ISS;NAS;TAS] [GO:0000166
"nucleotide binding" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0007422 "peripheral nervous system development"
evidence=TAS] [GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0000785 "chromatin" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0005694 "chromosome"
evidence=IDA] [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISS;NAS;IMP] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0000819 "sister chromatid segregation"
evidence=IMP] [GO:0007052 "mitotic spindle organization"
evidence=IMP] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0007052
GO:GO:0000166 GO:GO:0003677 GO:GO:0006281 GO:GO:0007422
GO:GO:0000785 GO:GO:0006310 GO:GO:0007076 GO:GO:0000796
GO:GO:0007062 SUPFAM:SSF75553 HSSP:Q9X0R4 FlyBase:FBgn0015391
EMBL:AF185287 ProteinModelPortal:Q9U6I2 STRING:Q9U6I2 PRIDE:Q9U6I2
InParanoid:Q9U6I2 ArrayExpress:Q9U6I2 Bgee:Q9U6I2 Uniprot:Q9U6I2
Length = 1409
Score = 381 (139.2 bits), Expect = 8.3e-34, P = 8.3e-34
Identities = 94/243 (38%), Positives = 142/243 (58%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQI 217
F AIIGPNGSGKSNVIDSM+FVFG RA++IR ++S L+H S + CSVA+HF QI
Sbjct: 113 FTAIIGPNGSGKSNVIDSMMFVFGCRANRIRCKRVSTLIHSSSSYPNLRSCSVAVHFKQI 172
Query: 218 IDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLI 277
+DK + E +P + + I RTA DNSSYY +N K+ K+VAK+L+ H VDL +NRFLI
Sbjct: 173 VDKGDGTCEDVPDSSIVIERTAMSDNSSYYQINDKRAQLKDVAKLLKKHHVDLEHNRFLI 232
Query: 278 LQEPIAKMEVLYGK-YDEERTEKLTRVQLVETDLKALEP--ELRKAVNFL-----ELEN- 328
LQ + + ++ K E T L ++ + + + P ++ + V+ L E N
Sbjct: 233 LQGEVESIAMMKPKGQTENETGMLEYLEDIVGTQRYIRPLQQINQRVDQLTDDRTEKHNR 292
Query: 329 C--VQRKHNEIYQ-YERYVN-MKNLGEH-ETKVQQMEQELTANLESIKKCTDEMESAKTE 383
C +R+ ++ Q + V+ +K E TK +++ ++ +++ T E E+ E
Sbjct: 293 CKLAEREMKDLEQPFNEAVDYLKKENELVRTKSFHIQKIISIKKSKLEQYTQEHEACAEE 352
Query: 384 LKT 386
LKT
Sbjct: 353 LKT 355
Score = 187 (70.9 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 54/165 (32%), Positives = 85/165 (51%)
Query: 20 RAKKTQEQDDGNVQTNDKSXXXXXXXXXXXGGTYVGEVYIPP-IAPVCFADPTGPRLIIT 78
RA++ QE++D V D + GGT +G++YIPP + P C + TGPRLII+
Sbjct: 35 RAQQQQEEEDAAVDALDDALIFDDEE----GGTRIGDIYIPPPVPPHCSMESTGPRLIIS 90
Query: 79 KIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIG--TNRY--K 134
KIV NFKSYAG V LGPF+ +++ P G + + +++ + + G NR K
Sbjct: 91 KIVNRNFKSYAGEVELGPFHQSFT---AIIGPNGSGK--SNVIDSMMFVFGCRANRIRCK 145
Query: 135 RFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFV 179
R + +I + S + S+ F I+ +V DS + +
Sbjct: 146 RVSTLIHSSSSYPNLRSCSVAVHFKQIVDKGDGTCEDVPDSSIVI 190
Score = 140 (54.3 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 26/36 (72%), Positives = 31/36 (86%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKR 135
GEVE I+MM PKG+TE ETG+LEYLE+I+GT RY R
Sbjct: 235 GEVESIAMMKPKGQTENETGMLEYLEDIVGTQRYIR 270
Score = 100 (40.3 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 28/110 (25%), Positives = 61/110 (55%)
Query: 281 PIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQY 340
P+ ++ + ++RTEK R +L E ++K LE +AV++L+ EN + R + +
Sbjct: 271 PLQQINQRVDQLTDDRTEKHNRCKLAEREMKDLEQPFNEAVDYLKKENELVRTKS--FHI 328
Query: 341 ERYVNMKNLGEHETKVQQMEQELTANLESIK---KCTDEMESAKTELKTV 387
++ +++K ++K++Q QE A E +K + T ++ ++ E +T+
Sbjct: 329 QKIISIK-----KSKLEQYTQEHEACAEELKTHDEGTAALKQSRAEKETI 373
Score = 68 (29.0 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 44/182 (24%), Positives = 76/182 (41%)
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTL-----NGKKVHFKEVAKV------LRD 265
II K EEYE + +I + S+Y + N K K+ A++ L D
Sbjct: 373 IIRKEIEEYEALVKKREQIKKRLVTVESAYTEIQSTMENTNKQRKKDKAQIEKNEKELED 432
Query: 266 -HGVDLLNNRFLI-LQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323
H + N R + + + +EV +EE EK + +L +T E L+ +
Sbjct: 433 LHKLPEKNQREIEDCNKKLESLEVNKVTLNEE-LEK-QQAELTKTTAPLTEKRLKLSDEL 490
Query: 324 LELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTE 383
+ L+ V E+ +E +K L + ET + + L ++ E +K +E + E
Sbjct: 491 VGLKEKVNTAKGEVQVFES--QLKILKQAETTESRKYETLKSSYEQSQKSLEEKVTRVDE 548
Query: 384 LK 385
LK
Sbjct: 549 LK 550
Score = 55 (24.4 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 19/113 (16%), Positives = 52/113 (46%)
Query: 283 AKMEVLYGKYDEERTEKL----TRVQLVETDLKALEPELRKA-VNFLELENCVQR---KH 334
+++E + +YD R E + +++ V + ++ L +R V + + + +
Sbjct: 896 SQIEEIQNQYDTLRNESVKPVEAKIKKVNSQIEKLAANVRSLNVGLATADRNITKITGNN 955
Query: 335 NEIYQYERYVN--MKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELK 385
N + + + +K+L E K ++ ++EL +E + + +S +++K
Sbjct: 956 NNLRENIKAAEEKLKSLNEDRNKAKEKKEELEKEMEESEASIEGAKSQSSDIK 1008
Score = 53 (23.7 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 27/121 (22%), Positives = 51/121 (42%)
Query: 222 NEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEP 281
NEE E E+ +T L+ + V KE + V + ++ IL++
Sbjct: 462 NEELE---KQQAELTKTTAPLTEKRLKLSDELVGLKEKVNTAKGE-VQVFESQLKILKQA 517
Query: 282 IA----KMEVLYGKYDEERT---EKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKH 334
K E L Y++ + EK+TRV ++ + ++ E+ A E++ V+ +
Sbjct: 518 ETTESRKYETLKSSYEQSQKSLEEKVTRVDELKESIPRMKTEI--ASKSAEVDKMVKEER 575
Query: 335 N 335
N
Sbjct: 576 N 576
Score = 48 (22.0 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 37/188 (19%), Positives = 82/188 (43%)
Query: 206 SRCSVAIHFAQIIDKP-NEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVH-----FKEV 259
+RC +A + +++P NE + + + E+ RT + ++ K+ +
Sbjct: 291 NRCKLAEREMKDLEQPFNEAVDYLKKEN-ELVRTKSFHIQKIISIKKSKLEQYTQEHEAC 349
Query: 260 AKVLRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRK 319
A+ L+ H + L++ A+ E + K EE + + + ++ L +E +
Sbjct: 350 AEELKTH-----DEGTAALKQSRAEKETIIRKEIEEYEALVKKREQIKKRLVTVESAYTE 404
Query: 320 AVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMES 379
+ +E N QRK ++ Q E+ N K L + + ++ ++ N I+ C ++ES
Sbjct: 405 IQSTMENTN-KQRKKDKA-QIEK--NEKELED----LHKLPEK---NQREIEDCNKKLES 453
Query: 380 AKTELKTV 387
+ T+
Sbjct: 454 LEVNKVTL 461
Score = 46 (21.3 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 307 ETDLKALEPELRKAVNFLELENCVQRKHNEIY-QYE--RYVNMKNLGEHETKVQQMEQEL 363
E ++A + EL +A F E V + EI QY+ R ++K + KV ++L
Sbjct: 874 EEQIEAAKQELEQA-QFAE--QAVSSQIEEIQNQYDTLRNESVKPVEAKIKKVNSQIEKL 930
Query: 364 TANLESI 370
AN+ S+
Sbjct: 931 AANVRSL 937
Score = 46 (21.3 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 19/85 (22%), Positives = 37/85 (43%)
Query: 309 DLKALEPELRKAVNFLE-----LENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQEL 363
D++ EL+ VN+ + LE +Q N + + E K L + +EQ++
Sbjct: 792 DMQIQAEELQARVNYCQEQQGSLEREIQTLKNGLQRDE--AEYKRLA---VSITSLEQQM 846
Query: 364 TANLESIKKCTDEMESAKTELKTVE 388
+NL+ + M T+ + V+
Sbjct: 847 ASNLKQCEAQRQRMLKKTTDERAVK 871
Score = 44 (20.5 bits), Expect = 9.0e-11, Sum P(2) = 9.0e-11
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 351 EHETKVQQMEQE---LTANLESIKKCTDEMESAKTELK-TVE 388
E ET +++ +E L E IKK +ESA TE++ T+E
Sbjct: 369 EKETIIRKEIEEYEALVKKREQIKKRLVTVESAYTEIQSTME 410
Score = 43 (20.2 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 291 KYDEERTEKLTRVQLVE------TDLKALEPELRKA--VNFLELENCVQRKHNEIYQ 339
+++E+R L RV+++E +++ E+RK F++ + + RK E+YQ
Sbjct: 1110 EFNEKRLVYLDRVRVLEDITSKRNEMRDKYEEVRKRRYKEFMDGFSIITRKLKEMYQ 1166
>CGD|CAL0003745 [details] [associations]
symbol:SMC4 species:5476 "Candida albicans" [GO:0032116 "SMC
loading complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000939 "condensed chromosome inner kinetochore"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000799
"nuclear condensin complex" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0007076 "mitotic chromosome condensation"
evidence=IEA] [GO:0070058 "tRNA gene clustering" evidence=IEA]
InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 CGD:CAL0003745
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 EMBL:AACQ01000063
EMBL:AACQ01000062 GO:GO:0007062 eggNOG:COG1196 KO:K06675
SUPFAM:SSF75553 RefSeq:XP_716802.1 RefSeq:XP_716862.1
ProteinModelPortal:Q5A4Y2 STRING:Q5A4Y2 GeneID:3641522
GeneID:3641578 KEGG:cal:CaO19.8579 KEGG:cal:CaO19.964
Uniprot:Q5A4Y2
Length = 1368
Score = 323 (118.8 bits), Expect = 6.7e-33, Sum P(2) = 6.7e-33
Identities = 92/242 (38%), Positives = 134/242 (55%)
Query: 145 SGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKS-DQVG 203
+GK VI F+A++GPNGSGKSNVIDSMLFVFG+RASK+R KLS L+H S DQ
Sbjct: 161 AGKK-VIGPFHSSFSAVVGPNGSGKSNVIDSMLFVFGFRASKMRQGKLSELIHNSGDQ-- 217
Query: 204 GVSRCSVAIHFAQIIDK--PNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAK 261
C V IHF ++D ++ +++P ++L I+R AF +N S Y +NGK + EV
Sbjct: 218 RPDYCQVDIHFQMVVDDLVVPQKADVVPDSELIISRKAFRNNQSSYYINGKTSSYSEVTT 277
Query: 262 VLRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRV--QLVETDL--KALEPEL 317
+L++ G+DL + RFLILQ + + + K ++E + L +V T K +E +
Sbjct: 278 LLKNKGIDLDHKRFLILQGEVESIAQMKPKAEKENDDGLLEYLEDIVGTSKYKKLIEDSI 337
Query: 318 RKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQME-QELTANLESIKKCTDE 376
V EL + K N E+ K+L E E KV+ + EL L + K +
Sbjct: 338 ---VRIDELNDICLEKANRFDLVEKD---KDLLE-EKKVEALRFLELEKKLINCKSVQFQ 390
Query: 377 ME 378
+E
Sbjct: 391 IE 392
Score = 119 (46.9 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
Identities = 21/36 (58%), Positives = 29/36 (80%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKR 135
GEVE I+ M PK + E + GLLEYLE+I+GT++YK+
Sbjct: 296 GEVESIAQMKPKAEKENDDGLLEYLEDIVGTSKYKK 331
Score = 108 (43.1 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 298 EKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQ 357
EK R LVE D LE + +A+ FLELE + + +Q E + K + + +
Sbjct: 349 EKANRFDLVEKDKDLLEEKKVEALRFLELEKKLINCKSVQFQIEISAHQKRIAAKQAEAD 408
Query: 358 QMEQELTANLESIKKCTDEMESAKTELKTVE 388
+E+EL N ES K+ + +ES + K +E
Sbjct: 409 AIEKELEENKESNKEILEGIESELSTQKEIE 439
Score = 106 (42.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 21/34 (61%), Positives = 28/34 (82%)
Query: 125 EEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRF 158
+++IG + F+A++GPNGSGKSNVIDSMLF F
Sbjct: 163 KKVIGPF-HSSFSAVVGPNGSGKSNVIDSMLFVF 195
Score = 79 (32.9 bits), Expect = 6.7e-33, Sum P(2) = 6.7e-33
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 73 PRLIITKIVAFNFKSYAGYVTLGPFNT 99
PRL+I ++V +FKSYAG +GPF++
Sbjct: 145 PRLVIDRLVLTDFKSYAGKKVIGPFHS 171
Score = 67 (28.6 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 25/110 (22%), Positives = 58/110 (52%)
Query: 278 LQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELE--NCVQRKHN 335
L++ K++ + ++++ ++ ++ ++ L+ L+PE A++ L+L+ + V K
Sbjct: 847 LEKMNTKLQEMENEFEQMNSDYNEKIAMLNK-LQVLKPETEFAISRLKLDIQSLVSEK-K 904
Query: 336 EIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELK 385
E+ Q KNL + K+++ L S +K +E+ +AKT++K
Sbjct: 905 EVTQI-----CKNLIAEQQKLEE-NNPFEQQLLSKEKELEELVNAKTQIK 948
Score = 66 (28.3 bits), Expect = 3.2e-09, Sum P(3) = 3.2e-09
Identities = 21/96 (21%), Positives = 47/96 (48%)
Query: 292 YDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNE-IYQYERYVNMKNLG 350
+D + EK ++L E+ ++ L +L N LE +H E + Q ++ K +
Sbjct: 554 WDSKLKEKENEIKLAESAIEILRSQLNSTTNQLE-------EHKERLIQIKKLGKDKEVE 606
Query: 351 --EHETKVQQMEQELTANLESIKKCTDEMESAKTEL 384
E+E+K+ ++E+++ E + + + K++L
Sbjct: 607 YRENESKLGKIEEQIALGEEQCQTAKSALNNFKSQL 642
Score = 55 (24.4 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 21/86 (24%), Positives = 41/86 (47%)
Query: 310 LKALEPELRKAVNFLELENCVQRKHN----EIYQYERYVNMKNLGEHETKVQQMEQELTA 365
+K LE E+ + +E Q + +I + +R + + L E +K++++E E
Sbjct: 1001 VKKLENEINRHTKLIESLTTEQEEAEAELEKINEQQRSL-LSKLEEVNSKLKELEDERND 1059
Query: 366 ---NLESIKKCTDEMESAKTELKTVE 388
NLE +K +E + + K+VE
Sbjct: 1060 KEDNLEKMKHDLEEKQDQINKFKSVE 1085
Score = 48 (22.0 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 21/93 (22%), Positives = 42/93 (45%)
Query: 291 KYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLG 350
KY+ + L+ + + DL+A+ E+ ELEN + +I + Y K +
Sbjct: 1135 KYNGALIDTLSEEDIADVDLEAVTSEIE------ELENYMANVKVDIEILKEY-GAK-IV 1186
Query: 351 EHETKVQQMEQELTANLESIKKCTDEMESAKTE 383
E+ K + Q + A +S K D+++ + +
Sbjct: 1187 EYNDKKSDLNQAV-AERDSKKNYCDDLKRKRLD 1218
Score = 47 (21.6 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 23/128 (17%), Positives = 55/128 (42%)
Query: 262 VLRDHGVDLLNNRFLILQEPI-----AKMEVLYGKYDEERTEKLTRVQLVETDLKALEPE 316
+L + V+ L RFL L++ + + ++ + + K +E +L+ +
Sbjct: 363 LLEEKKVEAL--RFLELEKKLINCKSVQFQIEISAHQKRIAAKQAEADAIEKELEENKES 420
Query: 317 LRKAVNFLELENCVQRK-HNEIYQYERYVNM--KNLGEHETKVQQMEQELTANLESIKKC 373
++ + +E E Q++ +I ++ KN + K +E++ N +KK
Sbjct: 421 NKEILEGIESELSTQKEIERDIKVLSAEIDSLGKNRKDISKKNVSLEEKSKNNANKLKKI 480
Query: 374 TDEMESAK 381
+E++K
Sbjct: 481 QKSLENSK 488
Score = 42 (19.8 bits), Expect = 8.0e-07, Sum P(3) = 8.0e-07
Identities = 13/55 (23%), Positives = 31/55 (56%)
Query: 282 IAKMEVLYGKYDE---ERTEKLTRVQLVETDLKALEPELRKAVNF-LELENCVQR 332
++K+E + K E ER +K ++ ++ DL+ + ++ K + +EL N +++
Sbjct: 1040 LSKLEEVNSKLKELEDERNDKEDNLEKMKHDLEEKQDQINKFKSVEIELLNKLEK 1094
>UNIPROTKB|C9JJ64 [details] [associations]
symbol:SMC4 "Structural maintenance of chromosomes protein
4" species:9606 "Homo sapiens" [GO:0010032 "meiotic chromosome
condensation" evidence=IEA] [GO:0045132 "meiotic chromosome
segregation" evidence=IEA] [GO:0051383 "kinetochore organization"
evidence=IEA] InterPro:IPR003395 Pfam:PF02463 EMBL:AC024221
HGNC:HGNC:14013 HOGENOM:HOG000201987 IPI:IPI00946854
ProteinModelPortal:C9JJ64 SMR:C9JJ64 STRING:C9JJ64
Ensembl:ENST00000490207 ArrayExpress:C9JJ64 Bgee:C9JJ64
Uniprot:C9JJ64
Length = 180
Score = 266 (98.7 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF+ IIGPNGSGKSNVIDSMLFVFGYRA KIR+ KLSVL+H SD+ + C+V +HF +
Sbjct: 107 RFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIRSKKLSVLIHNSDEHKDIQSCTVEVHFQK 166
Query: 217 IIDKPNEEYEIIP 229
IIDK ++YE+IP
Sbjct: 167 IIDKEGDDYEVIP 179
Score = 118 (46.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 125 EEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRF 158
E+I+G +KRF+ IIGPNGSGKSNVIDSMLF F
Sbjct: 98 EKILGPF-HKRFSCIIGPNGSGKSNVIDSMLFVF 130
Score = 101 (40.6 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 23/41 (56%), Positives = 26/41 (63%)
Query: 59 IPPIAPVCFADPTG-PRLIITKIVAFNFKSYAGYVTLGPFN 98
IPP P + G PRL+IT IV NFKSYAG LGPF+
Sbjct: 65 IPPPPPPAMTNEAGAPRLMITHIVNQNFKSYAGEKILGPFH 105
>DICTYBASE|DDB_G0286403 [details] [associations]
symbol:smc4 "structural maintenance of chromosome
protein" species:44689 "Dictyostelium discoideum" [GO:0051276
"chromosome organization" evidence=IEA] [GO:0030261 "chromosome
condensation" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0046982 "protein heterodimerization activity" evidence=ISS]
[GO:0007076 "mitotic chromosome condensation" evidence=ISS]
[GO:0007059 "chromosome segregation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000796 "condensin complex" evidence=ISS] [GO:0000070 "mitotic
sister chromatid segregation" evidence=ISS] [GO:0051301 "cell
division" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
dictyBase:DDB_G0286403 Pfam:PF02463 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0051301 GenomeReviews:CM000153_GR GO:GO:0006281
GO:GO:0006310 GO:GO:0046982 EMBL:AAFI02000085 GO:GO:0007076
GO:GO:0000796 GO:GO:0007062 eggNOG:COG1196 KO:K06675
SUPFAM:SSF75553 HSSP:P32908 RefSeq:XP_637730.1
ProteinModelPortal:Q54LV0 STRING:Q54LV0 EnsemblProtists:DDB0219935
GeneID:8625595 KEGG:ddi:DDB_G0286403 OMA:QENFDEN Uniprot:Q54LV0
Length = 1415
Score = 320 (117.7 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 68/138 (49%), Positives = 94/138 (68%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQI 217
F++++GPNGSGKSNVID+MLFVFGYRA +IR NK+S L+H S+ ++ V++HF +I
Sbjct: 184 FSSVVGPNGSGKSNVIDAMLFVFGYRAKQIRLNKISELIHNSENHKNLTNGRVSVHFQEI 243
Query: 218 IDKPNEE-YEIIPGTDLEIARTAFY-----DNSSYYTLNGKKVHFKEVAKVLRDHGVDLL 271
ID P E+ YE++ G++ + RTA D S Y LN K V ++ +L+D G+DL
Sbjct: 244 IDLPGEDNYEVVKGSEFVVTRTAQKTGNNKDGVSKYYLNDKVVKLDDLKTILKDKGIDLD 303
Query: 272 NNRFLILQ---EPIAKME 286
NNRFLILQ E IA M+
Sbjct: 304 NNRFLILQGEVEQIAMMK 321
Score = 115 (45.5 bits), Expect = 7.4e-05, Sum P(3) = 7.4e-05
Identities = 23/34 (67%), Positives = 27/34 (79%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRY 133
GEVEQI+MM PKG E GLLEYLE+IIG+ +Y
Sbjct: 312 GEVEQIAMMKPKGVHPGEEGLLEYLEDIIGSKKY 345
Score = 71 (30.1 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 27/109 (24%), Positives = 49/109 (44%)
Query: 284 KMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERY 343
K+E L + D +T T+ + +K+L + K++ L EN ++ NE E
Sbjct: 990 KVESLQSRIDSNQTNT-TKANV---QIKSLAKSMEKSIKILN-ENTKEKDENEAALAEIL 1044
Query: 344 VNMKNLGEHETKVQQ-ME---QELTANLESIKKCTDEMESAKTELKTVE 388
K+L + K + ME ++L E K+ E E AK ++ ++
Sbjct: 1045 EKYKSLEKENLKATEAMEAVSEQLREKEEETKEIRKEHEKAKKVIEKIK 1093
Score = 63 (27.2 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 30/129 (23%), Positives = 65/129 (50%)
Query: 257 KEVAKVLRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPE 316
K+ + RD+ ++ ++ ++ ++ K + E+ E + ++VE K LE E
Sbjct: 377 KDALQQERDNALEYIDKELKLIHCKSIHYQIGRSKPEREKNEIAAKQEMVE---KQLEQE 433
Query: 317 L--RKAVN--FLELENCVQRKHNEIYQYERYV-NMKN-LGEHETKVQQMEQELTANLES- 369
L +KA N LE E +++++ ++ + + + KN L E K + ++E T +L++
Sbjct: 434 LVTQKASNDKLLEFEKNLKQQNKQLDELNKQMAKCKNELLTTEKKGVKYKEE-TKHLKTK 492
Query: 370 IKKCTDEME 378
+KK +E
Sbjct: 493 VKKNNSVIE 501
Score = 61 (26.5 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 336 EIYQYERYVNMKNLGE--HE--TKVQQMEQELTANLESIK---KCTDEMESAKTELKTVE 388
EI QY +NL HE T++Q++ +E N+E +K K E S K E +E
Sbjct: 1154 EIEQYMEATEQQNLIAKIHELTTQIQKISKENNVNIEVVKDFQKKEQEYHSRKAEFDEIE 1213
Score = 46 (21.3 bits), Expect = 4.4e-29, Sum P(2) = 4.4e-29
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 351 EHETKVQQMEQELTAN-LESIKKCTDEMESAKTELKTV 387
E ETK + E E +E IK ++E+ E KT+
Sbjct: 1072 EEETKEIRKEHEKAKKVIEKIKVSNSKLETQIEEFKTL 1109
Score = 45 (20.9 bits), Expect = 7.4e-05, Sum P(3) = 7.4e-05
Identities = 25/104 (24%), Positives = 42/104 (40%)
Query: 233 LEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQE-PIAKMEVLYGK 291
LE +T +NSS T+ + + KE ++ HG L + I Q+ +A + +
Sbjct: 665 LEQIKTNLSENSSRNTILDRLLKIKESGQISGIHG--RLGDLGAIDQKYDVAISTAAFSQ 722
Query: 292 YDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHN 335
D E E ++ L E F+ LEN ++ N
Sbjct: 723 MDNIIVETTAAA---EACVELLRKENLGRATFMILENLEYQRQN 763
Score = 43 (20.2 bits), Expect = 9.0e-29, Sum P(2) = 9.0e-29
Identities = 18/89 (20%), Positives = 45/89 (50%)
Query: 297 TEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKV 356
TEK V+ E + K L+ +++K + +E E +K E ++ ++ +++ E +
Sbjct: 475 TEK-KGVKYKE-ETKHLKTKVKKNNSVIEEET---KKQAE-FERSTIIHKQDIVRFEKEY 528
Query: 357 QQMEQELTANLESIKKCTDEMESAKTELK 385
++ +EL + ++ + ++ TEL+
Sbjct: 529 VELPKELIVEEKKLESMLNSLKGEVTELQ 557
Score = 42 (19.8 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 12/48 (25%), Positives = 28/48 (58%)
Query: 344 VNMKNLGE-HETKVQQME-QELTANLES-IKKCTDEMESAKTELKTVE 388
+N K G+ E K + +E Q+ + L+S +++C DE+ + +++ +
Sbjct: 846 MNSKLKGDPKEDKKKLIELQDNLSQLDSDLRQCRDELVEIENQIQQAQ 893
>WB|WBGene00004874 [details] [associations]
symbol:smc-4 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0051301 "cell
division" evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040039 "inductive cell migration" evidence=IMP] [GO:0007276
"gamete generation" evidence=IMP] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0000775 "chromosome, centromeric
region" evidence=IDA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0005737 GO:GO:0040007 GO:GO:0000775 GO:GO:0002119
GO:GO:0006281 GO:GO:0000910 GO:GO:0000070 GO:GO:0006310
GO:GO:0040035 GO:GO:0040039 GO:GO:0030261 GO:GO:0000793
GO:GO:0007276 GO:GO:0007062 eggNOG:COG1196
GeneTree:ENSGT00580000081617 KO:K06675 SUPFAM:SSF75553 EMBL:Z46242
PIR:T21809 RefSeq:NP_497935.1 ProteinModelPortal:Q20060 SMR:Q20060
IntAct:Q20060 STRING:Q20060 PaxDb:Q20060 EnsemblMetazoa:F35G12.8
GeneID:175603 KEGG:cel:CELE_F35G12.8 UCSC:F35G12.8 CTD:175603
WormBase:F35G12.8 HOGENOM:HOG000021360 InParanoid:Q20060
OMA:IAIEFLT NextBio:888868 Uniprot:Q20060
Length = 1549
Score = 318 (117.0 bits), Expect = 4.5e-31, Sum P(2) = 4.5e-31
Identities = 92/247 (37%), Positives = 133/247 (53%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVG-GVSRCSVAIHFAQ 216
F +IIGPNGSGKSN+IDS+LFVFG+RASKIR+ K+S L+HKS G +C+V IHF +
Sbjct: 116 FTSIIGPNGSGKSNLIDSLLFVFGFRASKIRSAKVSNLIHKS--AGRNPDKCTVTIHFQR 173
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
I+D P YE++ ++ I+RTAF +NSS Y ++G+ EV LR +D+ +NRFL
Sbjct: 174 IVDIPGH-YEVVKDSEFTISRTAFQNNSSSYAIDGRPATKNEVEARLRRVDIDIEHNRFL 232
Query: 277 ILQ---EPIAKMEVLYGKYDE----ERTEKLTRVQLVETDLKALEPELRKAVNFLELENC 329
ILQ E IA M+ + E E E + +E +K + + + L +
Sbjct: 233 ILQGEVEQIAMMKPVKTTKSETGMVEYLEDIIGTNRLEPFVKLFQRRVNRLTCDLSQQR- 291
Query: 330 VQRKH--NEIYQYERYVN------MKNLGEHETKVQQMEQELTAN-LESIKKCTDEMESA 380
+ R H N E V MK E T ++EQ L+ I E++
Sbjct: 292 IARDHARNSKVAMENPVRAAIEFLMKE-NEATTIHMKLEQRRRQRYLDKIAPKQAELDKM 350
Query: 381 KTELKTV 387
K E+K++
Sbjct: 351 KEEMKSI 357
Score = 123 (48.4 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 24/37 (64%), Positives = 30/37 (81%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRF 136
GEVEQI+MM P T+ ETG++EYLE+IIGTNR + F
Sbjct: 236 GEVEQIAMMKPVKTTKSETGMVEYLEDIIGTNRLEPF 272
Score = 104 (41.7 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 24/42 (57%), Positives = 29/42 (69%)
Query: 133 YKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGK-SNVI 173
+K F +IIGPNGSGKSN+IDS+LF F S K SN+I
Sbjct: 113 HKSFTSIIGPNGSGKSNLIDSLLFVFGFRASKIRSAKVSNLI 154
Score = 68 (29.0 bits), Expect = 4.5e-31, Sum P(2) = 4.5e-31
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 61 PIAPVCFADPT-GPRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETG 119
P P P RL+I + NFKSY G ++GPF+ S++ P G + +
Sbjct: 75 PSRPDFLTKPNRADRLMIRNVEVDNFKSYFGKASIGPFHKSFT---SIIGPNGSGK--SN 129
Query: 120 LLEYLEEIIG 129
L++ L + G
Sbjct: 130 LIDSLLFVFG 139
Score = 66 (28.3 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 16/76 (21%), Positives = 38/76 (50%)
Query: 312 ALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIK 371
A+E +R A+ FL EN H ++ Q R + + + ++ +M++E+ + E++
Sbjct: 303 AMENPVRAAIEFLMKENEATTIHMKLEQRRRQRYLDKIAPKQAELDKMKEEMKSIAETLD 362
Query: 372 KCTDEMESAKTELKTV 387
+E + ++ K +
Sbjct: 363 TNKNEYKQSEEAQKVM 378
Score = 58 (25.5 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 35/139 (25%), Positives = 60/139 (43%)
Query: 257 KEVAKVLRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPE 316
KE AKV D L ++ I++E K + L EE + R +++ L + E
Sbjct: 857 KEAAKVKVD--AKTLEDKQKIVEELEKKRDEL----GEEAAKVKARQAEIQSKLDGIFKE 910
Query: 317 LRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKK-CTD 375
L + E+ +R+ E + N+ N G + K + ++E +KK C +
Sbjct: 911 LVQCHRDEAKESLQKRQKLEKDIAKETANISNSGRNIAKCDENISRHDKDIEKMKKKCEE 970
Query: 376 EMESA------KTELKTVE 388
ME A K++ +TVE
Sbjct: 971 LMEKAIDDEEVKSKKETVE 989
Score = 50 (22.7 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 341 ERYVNMKNLGEHET-KVQQMEQELTANLESIKKCTDEMESAKTE 383
E + ++K L T K+ ++++ L ++ ES K DE++ K E
Sbjct: 510 EDFEDLKKLANSGTDKLIELKKRLESSEESYAKEKDELDKLKPE 553
>UNIPROTKB|Q20060 [details] [associations]
symbol:smc-4 "Structural maintenance of chromosomes protein
4" species:6239 "Caenorhabditis elegans" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0005737 GO:GO:0040007 GO:GO:0000775 GO:GO:0002119
GO:GO:0006281 GO:GO:0000910 GO:GO:0000070 GO:GO:0006310
GO:GO:0040035 GO:GO:0040039 GO:GO:0030261 GO:GO:0000793
GO:GO:0007276 GO:GO:0007062 eggNOG:COG1196
GeneTree:ENSGT00580000081617 KO:K06675 SUPFAM:SSF75553 EMBL:Z46242
PIR:T21809 RefSeq:NP_497935.1 ProteinModelPortal:Q20060 SMR:Q20060
IntAct:Q20060 STRING:Q20060 PaxDb:Q20060 EnsemblMetazoa:F35G12.8
GeneID:175603 KEGG:cel:CELE_F35G12.8 UCSC:F35G12.8 CTD:175603
WormBase:F35G12.8 HOGENOM:HOG000021360 InParanoid:Q20060
OMA:IAIEFLT NextBio:888868 Uniprot:Q20060
Length = 1549
Score = 318 (117.0 bits), Expect = 4.5e-31, Sum P(2) = 4.5e-31
Identities = 92/247 (37%), Positives = 133/247 (53%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVG-GVSRCSVAIHFAQ 216
F +IIGPNGSGKSN+IDS+LFVFG+RASKIR+ K+S L+HKS G +C+V IHF +
Sbjct: 116 FTSIIGPNGSGKSNLIDSLLFVFGFRASKIRSAKVSNLIHKS--AGRNPDKCTVTIHFQR 173
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
I+D P YE++ ++ I+RTAF +NSS Y ++G+ EV LR +D+ +NRFL
Sbjct: 174 IVDIPGH-YEVVKDSEFTISRTAFQNNSSSYAIDGRPATKNEVEARLRRVDIDIEHNRFL 232
Query: 277 ILQ---EPIAKMEVLYGKYDE----ERTEKLTRVQLVETDLKALEPELRKAVNFLELENC 329
ILQ E IA M+ + E E E + +E +K + + + L +
Sbjct: 233 ILQGEVEQIAMMKPVKTTKSETGMVEYLEDIIGTNRLEPFVKLFQRRVNRLTCDLSQQR- 291
Query: 330 VQRKH--NEIYQYERYVN------MKNLGEHETKVQQMEQELTAN-LESIKKCTDEMESA 380
+ R H N E V MK E T ++EQ L+ I E++
Sbjct: 292 IARDHARNSKVAMENPVRAAIEFLMKE-NEATTIHMKLEQRRRQRYLDKIAPKQAELDKM 350
Query: 381 KTELKTV 387
K E+K++
Sbjct: 351 KEEMKSI 357
Score = 123 (48.4 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 24/37 (64%), Positives = 30/37 (81%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRF 136
GEVEQI+MM P T+ ETG++EYLE+IIGTNR + F
Sbjct: 236 GEVEQIAMMKPVKTTKSETGMVEYLEDIIGTNRLEPF 272
Score = 104 (41.7 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 24/42 (57%), Positives = 29/42 (69%)
Query: 133 YKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGK-SNVI 173
+K F +IIGPNGSGKSN+IDS+LF F S K SN+I
Sbjct: 113 HKSFTSIIGPNGSGKSNLIDSLLFVFGFRASKIRSAKVSNLI 154
Score = 68 (29.0 bits), Expect = 4.5e-31, Sum P(2) = 4.5e-31
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 61 PIAPVCFADPT-GPRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETG 119
P P P RL+I + NFKSY G ++GPF+ S++ P G + +
Sbjct: 75 PSRPDFLTKPNRADRLMIRNVEVDNFKSYFGKASIGPFHKSFT---SIIGPNGSGK--SN 129
Query: 120 LLEYLEEIIG 129
L++ L + G
Sbjct: 130 LIDSLLFVFG 139
Score = 66 (28.3 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 16/76 (21%), Positives = 38/76 (50%)
Query: 312 ALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIK 371
A+E +R A+ FL EN H ++ Q R + + + ++ +M++E+ + E++
Sbjct: 303 AMENPVRAAIEFLMKENEATTIHMKLEQRRRQRYLDKIAPKQAELDKMKEEMKSIAETLD 362
Query: 372 KCTDEMESAKTELKTV 387
+E + ++ K +
Sbjct: 363 TNKNEYKQSEEAQKVM 378
Score = 58 (25.5 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 35/139 (25%), Positives = 60/139 (43%)
Query: 257 KEVAKVLRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPE 316
KE AKV D L ++ I++E K + L EE + R +++ L + E
Sbjct: 857 KEAAKVKVD--AKTLEDKQKIVEELEKKRDEL----GEEAAKVKARQAEIQSKLDGIFKE 910
Query: 317 LRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKK-CTD 375
L + E+ +R+ E + N+ N G + K + ++E +KK C +
Sbjct: 911 LVQCHRDEAKESLQKRQKLEKDIAKETANISNSGRNIAKCDENISRHDKDIEKMKKKCEE 970
Query: 376 EMESA------KTELKTVE 388
ME A K++ +TVE
Sbjct: 971 LMEKAIDDEEVKSKKETVE 989
Score = 50 (22.7 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 341 ERYVNMKNLGEHET-KVQQMEQELTANLESIKKCTDEMESAKTE 383
E + ++K L T K+ ++++ L ++ ES K DE++ K E
Sbjct: 510 EDFEDLKKLANSGTDKLIELKKRLESSEESYAKEKDELDKLKPE 553
>SGD|S000004076 [details] [associations]
symbol:SMC4 "Subunit of the condensin complex" species:4932
"Saccharomyces cerevisiae" [GO:0007076 "mitotic chromosome
condensation" evidence=IMP;TAS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IGI;IDA]
[GO:0000070 "mitotic sister chromatid segregation" evidence=TAS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0051276 "chromosome
organization" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0007067 "mitosis"
evidence=IEA] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0000799 "nuclear condensin complex" evidence=TAS;IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0070058
"tRNA gene clustering" evidence=IMP] [GO:0032116 "SMC loading
complex" evidence=IDA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
SGD:S000004076 Pfam:PF02463 GO:GO:0005524 GO:GO:0005737
GO:GO:0051301 GO:GO:0006281 GO:GO:0003682 EMBL:BK006945
GO:GO:0016887 GO:GO:0006310 GO:GO:0007076 EMBL:U53880 GO:GO:0000799
GO:GO:0070058 EMBL:Z73259 GO:GO:0007062 eggNOG:COG1196
GeneTree:ENSGT00580000081617 KO:K06675 SUPFAM:SSF75553 OMA:IAIEFLT
HOGENOM:HOG000184777 OrthoDB:EOG4WM82V EMBL:Z73258 PIR:S64918
RefSeq:NP_013187.1 ProteinModelPortal:Q12267 SMR:Q12267
DIP:DIP-3007N IntAct:Q12267 MINT:MINT-436885 STRING:Q12267
PaxDb:Q12267 EnsemblFungi:YLR086W GeneID:850775 KEGG:sce:YLR086W
CYGD:YLR086w NextBio:966951 Genevestigator:Q12267
GermOnline:YLR086W Uniprot:Q12267
Length = 1418
Score = 344 (126.2 bits), Expect = 5.4e-31, Sum P(2) = 5.4e-31
Identities = 97/275 (35%), Positives = 150/275 (54%)
Query: 94 LGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDS 153
L P VE + + K+ L ++ E++ N +K + +GK V+
Sbjct: 127 LSPVKNSRVELQKIYDRHQSSSKQQSRL-FINELVLEN-FKSY--------AGKQ-VVGP 175
Query: 154 MLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIH 213
F+A++GPNGSGKSNVIDSMLFVFG+RA+K+R ++LS L+HKS+ + CSVA+H
Sbjct: 176 FHTSFSAVVGPNGSGKSNVIDSMLFVFGFRANKMRQDRLSDLIHKSEAFPSLQSCSVAVH 235
Query: 214 FAQIIDKPNEEYEII---PGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDL 270
F +ID+ + I PG L I R AF +NSS Y +N K+ + EV K+L++ G+DL
Sbjct: 236 FQYVIDESSGTSRIDEEKPG--LIITRKAFKNNSSKYYINEKESSYTEVTKLLKNEGIDL 293
Query: 271 LNNRFLILQEPIAKMEVLYGKYDEERTEKLTRV--QLVET-DLKALEPELRKAVNFLELE 327
+ RFLILQ + + + K ++E + L ++ T + K L E + L E
Sbjct: 294 DHKRFLILQGEVENIAQMKPKAEKESDDGLLEYLEDIIGTANYKPLIEERMGQIENLN-E 352
Query: 328 NCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQE 362
C++ K N +R N G+ ET ++ +E+E
Sbjct: 353 VCLE-KENRFEIVDREKNSLESGK-ETALEFLEKE 385
Score = 40 (19.1 bits), Expect = 5.4e-31, Sum P(2) = 5.4e-31
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 355 KVQQMEQELTANLESIKKCTDEMESAKTELK 385
+V ++E+EL+ + + +D + + ELK
Sbjct: 850 EVDKIERELSERENNFRVASDTVHEMEEELK 880
>UNIPROTKB|C9J578 [details] [associations]
symbol:SMC4 "Structural maintenance of chromosomes protein
4" species:9606 "Homo sapiens" [GO:0010032 "meiotic chromosome
condensation" evidence=IEA] [GO:0045132 "meiotic chromosome
segregation" evidence=IEA] [GO:0051383 "kinetochore organization"
evidence=IEA] InterPro:IPR003395 Pfam:PF02463 EMBL:AC024221
HGNC:HGNC:14013 IPI:IPI00945252 ProteinModelPortal:C9J578
SMR:C9J578 STRING:C9J578 Ensembl:ENST00000472991
HOGENOM:HOG000031135 ArrayExpress:C9J578 Bgee:C9J578 Uniprot:C9J578
Length = 139
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 61/123 (49%), Positives = 87/123 (70%)
Query: 176 MLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEI 235
MLFVFGYRA KIR+ KLSVL+H SD+ + C+V +HF +IIDK ++YE+IP ++ +
Sbjct: 1 MLFVFGYRAQKIRSKKLSVLIHNSDEHKDIQSCTVEVHFQKIIDKEGDDYEVIPNSNFYV 60
Query: 236 ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEE 295
+RTA DN+S Y ++GKK FK+V +LR HG+DL +NRFLILQ + ++ ++ K E
Sbjct: 61 SRTACRDNTSVYHISGKKKTFKDVGNLLRSHGIDLDHNRFLILQGEVEQIAMMKPKGQTE 120
Query: 296 RTE 298
E
Sbjct: 121 HDE 123
Score = 121 (47.7 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNR 132
GEVEQI+MM PKG+TE + G+LEYLE+IIG R
Sbjct: 105 GEVEQIAMMKPKGQTEHDEGMLEYLEDIIGCGR 137
>UNIPROTKB|C9IYK2 [details] [associations]
symbol:SMC4 "Structural maintenance of chromosomes protein
4" species:9606 "Homo sapiens" [GO:0010032 "meiotic chromosome
condensation" evidence=IEA] [GO:0045132 "meiotic chromosome
segregation" evidence=IEA] [GO:0051383 "kinetochore organization"
evidence=IEA] InterPro:IPR003395 Pfam:PF02463 EMBL:AC024221
HGNC:HGNC:14013 IPI:IPI00947202 SMR:C9IYK2 STRING:C9IYK2
Ensembl:ENST00000485645 Ensembl:ENST00000497311
HOGENOM:HOG000201987 Uniprot:C9IYK2
Length = 173
Score = 238 (88.8 bits), Expect = 9.5e-29, Sum P(2) = 9.5e-29
Identities = 45/67 (67%), Positives = 54/67 (80%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF+ IIGPNGSGKSNVIDSMLFVFGYRA KIR+ KLSVL+H SD+ + C+V +HF +
Sbjct: 107 RFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIRSKKLSVLIHNSDEHKDIQSCTVEVHFQK 166
Query: 217 IIDKPNE 223
IIDK +
Sbjct: 167 IIDKEGD 173
Score = 118 (46.6 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 125 EEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRF 158
E+I+G +KRF+ IIGPNGSGKSNVIDSMLF F
Sbjct: 98 EKILGPF-HKRFSCIIGPNGSGKSNVIDSMLFVF 130
Score = 101 (40.6 bits), Expect = 9.5e-29, Sum P(2) = 9.5e-29
Identities = 23/41 (56%), Positives = 26/41 (63%)
Query: 59 IPPIAPVCFADPTG-PRLIITKIVAFNFKSYAGYVTLGPFN 98
IPP P + G PRL+IT IV NFKSYAG LGPF+
Sbjct: 65 IPPPPPPAMTNEAGAPRLMITHIVNQNFKSYAGEKILGPFH 105
>UNIPROTKB|C9JWF0 [details] [associations]
symbol:SMC4 "Structural maintenance of chromosomes protein
4" species:9606 "Homo sapiens" [GO:0010032 "meiotic chromosome
condensation" evidence=IEA] [GO:0045132 "meiotic chromosome
segregation" evidence=IEA] [GO:0051383 "kinetochore organization"
evidence=IEA] InterPro:IPR003395 Pfam:PF02463 EMBL:AC024221
HGNC:HGNC:14013 IPI:IPI00944900 ProteinModelPortal:C9JWF0
SMR:C9JWF0 STRING:C9JWF0 Ensembl:ENST00000465903
ArrayExpress:C9JWF0 Bgee:C9JWF0 Uniprot:C9JWF0
Length = 170
Score = 237 (88.5 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 45/64 (70%), Positives = 53/64 (82%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF+ IIGPNGSGKSNVIDSMLFVFGYRA KIR+ KLSVL+H SD+ + C+V +HF +
Sbjct: 107 RFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIRSKKLSVLIHNSDEHKDIQSCTVEVHFQK 166
Query: 217 IIDK 220
IIDK
Sbjct: 167 IIDK 170
Score = 118 (46.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 125 EEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRF 158
E+I+G +KRF+ IIGPNGSGKSNVIDSMLF F
Sbjct: 98 EKILGPF-HKRFSCIIGPNGSGKSNVIDSMLFVF 130
Score = 101 (40.6 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 23/41 (56%), Positives = 26/41 (63%)
Query: 59 IPPIAPVCFADPTG-PRLIITKIVAFNFKSYAGYVTLGPFN 98
IPP P + G PRL+IT IV NFKSYAG LGPF+
Sbjct: 65 IPPPPPPAMTNEAGAPRLMITHIVNQNFKSYAGEKILGPFH 105
>UNIPROTKB|C9JVD8 [details] [associations]
symbol:SMC4 "Structural maintenance of chromosomes protein
4" species:9606 "Homo sapiens" [GO:0010032 "meiotic chromosome
condensation" evidence=IEA] [GO:0045132 "meiotic chromosome
segregation" evidence=IEA] [GO:0051383 "kinetochore organization"
evidence=IEA] InterPro:IPR003395 Pfam:PF02463 EMBL:AC024221
HGNC:HGNC:14013 HOGENOM:HOG000031135 IPI:IPI00947558
ProteinModelPortal:C9JVD8 SMR:C9JVD8 STRING:C9JVD8
Ensembl:ENST00000467468 ArrayExpress:C9JVD8 Bgee:C9JVD8
Uniprot:C9JVD8
Length = 119
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 62/114 (54%), Positives = 84/114 (73%)
Query: 176 MLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEI 235
MLFVFGYRA KIR+ KLSVL+H SD+ + C+V +HF +IIDK ++YE+IP ++ +
Sbjct: 1 MLFVFGYRAQKIRSKKLSVLIHNSDEHKDIQSCTVEVHFQKIIDKEGDDYEVIPNSNFYV 60
Query: 236 ARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQ---EPIAKME 286
+RTA DN+S Y ++GKK FK+V +LR HG+DL +NRFLILQ E IA M+
Sbjct: 61 SRTACRDNTSVYHISGKKKTFKDVGNLLRSHGIDLDHNRFLILQGEVEQIAMMK 114
>WB|WBGene00001086 [details] [associations]
symbol:dpy-27 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0016358 "dendrite development" evidence=IMP]
[GO:0042464 "dosage compensation by hypoactivation of X chromosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0000228
"nuclear chromosome" evidence=IDA] [GO:0000805 "X chromosome"
evidence=IDA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0046536 "dosage compensation complex"
evidence=IPI] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0009792 GO:GO:0040007 GO:GO:0018991
GO:GO:0040010 GO:GO:0002119 GO:GO:0043565 GO:GO:0006281
GO:GO:0016358 GO:GO:0010171 GO:GO:0040011 GO:GO:0006310
GO:GO:0030261 EMBL:Z35602 GO:GO:0000228 GO:GO:0000805 GO:GO:0042464
GO:GO:0007062 EMBL:L35274 PIR:T24216 RefSeq:NP_497771.1
ProteinModelPortal:P48996 SMR:P48996 IntAct:P48996 STRING:P48996
PaxDb:P48996 PRIDE:P48996 EnsemblMetazoa:R13G10.1 GeneID:175492
KEGG:cel:CELE_R13G10.1 UCSC:R13G10.1 CTD:175492 WormBase:R13G10.1
eggNOG:COG1196 GeneTree:ENSGT00580000081617 HOGENOM:HOG000021811
InParanoid:P48996 KO:K06675 OMA:FHKNLTM NextBio:888386
GO:GO:0046536 SUPFAM:SSF75553 Uniprot:P48996
Length = 1469
Score = 259 (96.2 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 62/141 (43%), Positives = 86/141 (60%)
Query: 161 IIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK 220
I+GPNGSGKSNVID++LFVFG++A KIR KLS L++ G CSV I F + D
Sbjct: 120 ILGPNGSGKSNVIDALLFVFGFKAGKIRTKKLSALINSG---GNYESCSVTIMFQMVKDM 176
Query: 221 PNE---EYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLI 277
P E +YE++ + I RT +N+S Y ++ K K+V ++L G+D+ +NRFLI
Sbjct: 177 PVENYDKYEVLTDNCVCITRTINRENNSKYRIDDKDASQKDVQELLLRAGIDMTHNRFLI 236
Query: 278 LQ---EPIAKMEVLYGKYDEE 295
LQ E IA M+ +EE
Sbjct: 237 LQGEVEAIALMKPTSKNPNEE 257
Score = 111 (44.1 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 34/92 (36%), Positives = 44/92 (47%)
Query: 57 VYIPPIAPVCFADPTGPRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEK 116
V IPP +DP G R+II I NFKSYAG LGPF+ + I GK+
Sbjct: 73 VQIPPKYEDQISDPDGNRMIILNIYVENFKSYAGKHILGPFHKN-LTMILGPNGSGKSNV 131
Query: 117 ETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKS 148
LL G R K+ +A+I G+ +S
Sbjct: 132 IDALLFVFGFKAGKIRTKKLSALINSGGNYES 163
Score = 109 (43.4 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRY 133
GEVE I++M P K E G+LEY+E+I+GTNR+
Sbjct: 239 GEVEAIALMKPTSKNPNEEGMLEYIEDIVGTNRF 272
Score = 62 (26.9 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 25/116 (21%), Positives = 50/116 (43%)
Query: 274 RFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELE-NCVQR 332
R L+ IA E Y E E L + DLK E +K+ ++ + +R
Sbjct: 842 RIAELKSSIAAHERRMVNYREVTVEDLDEKRAQIADLKRQVEESQKSSAKIKQQIEQYKR 901
Query: 333 KHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
K + ++ N ++ + + ++ Q+EQ++ I+ +E A+ +L +E
Sbjct: 902 KMDRMFMELVQKNKDSIEQAKDRMGQLEQDIARQTAIIENNPSHLEQAEKKLSELE 957
Score = 51 (23.0 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 22/95 (23%), Positives = 49/95 (51%)
Query: 293 DEERTEKLTRVQLVETDLKALEPELRKAVNFL-ELENCVQRKHNE-IYQYERYVNMKNLG 350
DE R EK ++ + + + ++ + L E EN QR E + +Y++ + +
Sbjct: 428 DEARREKF-EIETAPENARISKQNMQLEWDQLKEQENVCQRTATENLIKYDQK-SSADRA 485
Query: 351 EHETKVQQMEQELTANLESIKKCTDEMESAKTELK 385
+H+ +++ EL L+S++ E++ +++ELK
Sbjct: 486 KHDDLEKKLSDEL---LQSMR-AKAELDVSESELK 516
Score = 46 (21.3 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 164 PNGSGKSNVIDSMLFVFGYRA--SKIRANKLSVLMHKSDQVGGVSR 207
PN G I+ ++ + A SK+ +++S+L HKS Q G R
Sbjct: 254 PNEEGMLEYIEDIVGTNRFVAPISKLM-HRVSLLEHKSSQYGASVR 298
>UNIPROTKB|P48996 [details] [associations]
symbol:dpy-27 "Chromosome condensation protein dpy-27"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0009792 GO:GO:0040007 GO:GO:0018991
GO:GO:0040010 GO:GO:0002119 GO:GO:0043565 GO:GO:0006281
GO:GO:0016358 GO:GO:0010171 GO:GO:0040011 GO:GO:0006310
GO:GO:0030261 EMBL:Z35602 GO:GO:0000228 GO:GO:0000805 GO:GO:0042464
GO:GO:0007062 EMBL:L35274 PIR:T24216 RefSeq:NP_497771.1
ProteinModelPortal:P48996 SMR:P48996 IntAct:P48996 STRING:P48996
PaxDb:P48996 PRIDE:P48996 EnsemblMetazoa:R13G10.1 GeneID:175492
KEGG:cel:CELE_R13G10.1 UCSC:R13G10.1 CTD:175492 WormBase:R13G10.1
eggNOG:COG1196 GeneTree:ENSGT00580000081617 HOGENOM:HOG000021811
InParanoid:P48996 KO:K06675 OMA:FHKNLTM NextBio:888386
GO:GO:0046536 SUPFAM:SSF75553 Uniprot:P48996
Length = 1469
Score = 259 (96.2 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 62/141 (43%), Positives = 86/141 (60%)
Query: 161 IIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDK 220
I+GPNGSGKSNVID++LFVFG++A KIR KLS L++ G CSV I F + D
Sbjct: 120 ILGPNGSGKSNVIDALLFVFGFKAGKIRTKKLSALINSG---GNYESCSVTIMFQMVKDM 176
Query: 221 PNE---EYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLI 277
P E +YE++ + I RT +N+S Y ++ K K+V ++L G+D+ +NRFLI
Sbjct: 177 PVENYDKYEVLTDNCVCITRTINRENNSKYRIDDKDASQKDVQELLLRAGIDMTHNRFLI 236
Query: 278 LQ---EPIAKMEVLYGKYDEE 295
LQ E IA M+ +EE
Sbjct: 237 LQGEVEAIALMKPTSKNPNEE 257
Score = 111 (44.1 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 34/92 (36%), Positives = 44/92 (47%)
Query: 57 VYIPPIAPVCFADPTGPRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEK 116
V IPP +DP G R+II I NFKSYAG LGPF+ + I GK+
Sbjct: 73 VQIPPKYEDQISDPDGNRMIILNIYVENFKSYAGKHILGPFHKN-LTMILGPNGSGKSNV 131
Query: 117 ETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKS 148
LL G R K+ +A+I G+ +S
Sbjct: 132 IDALLFVFGFKAGKIRTKKLSALINSGGNYES 163
Score = 109 (43.4 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 100 GEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRY 133
GEVE I++M P K E G+LEY+E+I+GTNR+
Sbjct: 239 GEVEAIALMKPTSKNPNEEGMLEYIEDIVGTNRF 272
Score = 62 (26.9 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 25/116 (21%), Positives = 50/116 (43%)
Query: 274 RFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELE-NCVQR 332
R L+ IA E Y E E L + DLK E +K+ ++ + +R
Sbjct: 842 RIAELKSSIAAHERRMVNYREVTVEDLDEKRAQIADLKRQVEESQKSSAKIKQQIEQYKR 901
Query: 333 KHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
K + ++ N ++ + + ++ Q+EQ++ I+ +E A+ +L +E
Sbjct: 902 KMDRMFMELVQKNKDSIEQAKDRMGQLEQDIARQTAIIENNPSHLEQAEKKLSELE 957
Score = 51 (23.0 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 22/95 (23%), Positives = 49/95 (51%)
Query: 293 DEERTEKLTRVQLVETDLKALEPELRKAVNFL-ELENCVQRKHNE-IYQYERYVNMKNLG 350
DE R EK ++ + + + ++ + L E EN QR E + +Y++ + +
Sbjct: 428 DEARREKF-EIETAPENARISKQNMQLEWDQLKEQENVCQRTATENLIKYDQK-SSADRA 485
Query: 351 EHETKVQQMEQELTANLESIKKCTDEMESAKTELK 385
+H+ +++ EL L+S++ E++ +++ELK
Sbjct: 486 KHDDLEKKLSDEL---LQSMR-AKAELDVSESELK 516
Score = 46 (21.3 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 164 PNGSGKSNVIDSMLFVFGYRA--SKIRANKLSVLMHKSDQVGGVSR 207
PN G I+ ++ + A SK+ +++S+L HKS Q G R
Sbjct: 254 PNEEGMLEYIEDIVGTNRFVAPISKLM-HRVSLLEHKSSQYGASVR 298
>FB|FBgn0040283 [details] [associations]
symbol:SMC1 "SMC1" species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0008278 "cohesin
complex" evidence=ISS;IDA;NAS] [GO:0007062 "sister chromatid
cohesion" evidence=ISS;NAS] [GO:0030261 "chromosome condensation"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0010629 "negative regulation of gene expression"
evidence=IGI] [GO:0005694 "chromosome" evidence=IDA] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0016319 "mushroom body
development" evidence=IMP] [GO:0016322 "neuron remodeling"
evidence=IMP] [GO:0035327 "transcriptionally active chromatin"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005700
"polytene chromosome" evidence=IDA] InterPro:IPR024704
InterPro:IPR010935 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005634
GO:GO:0006281 GO:GO:0016322 GO:GO:0048813 GO:GO:0006310
GO:GO:0016319 GO:GO:0010629 GO:GO:0030261 GO:GO:0005700
GO:GO:0035327 GO:GO:0008278 GO:GO:0007062 SUPFAM:SSF75553
HSSP:Q9X0R4 EMBL:AF225909 EMBL:AJ271845 STRING:Q9N6I4
FlyBase:FBgn0040283 InParanoid:Q9N6I4 OrthoDB:EOG4QNKB0
Uniprot:Q9N6I4
Length = 1238
Score = 225 (84.3 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 90/303 (29%), Positives = 144/303 (47%)
Query: 101 EVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNA 160
+V Q P K + ET LEY+E + Y R + ++GP L +FNA
Sbjct: 7 DVAQRVATAPVRKPDDETAFLEYIE-MENFKSY-RGHIVVGP------------LKQFNA 52
Query: 161 IIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSR-CSVAIHFAQIID 219
+IGPNGSGKSN +D++ FV G + S +R +L+ L+H S VSR C V F
Sbjct: 53 VIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLNDLIHGSSIGNPVSRSCYVTAKFVL--- 109
Query: 220 KPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQ 279
NEE + D + A SS Y +NG+ V L G+++ FL+ Q
Sbjct: 110 --NEERHM----DFQ---RAVIGGSSEYRINGESVSSSTYLNKLEKIGINVKAKNFLVFQ 160
Query: 280 EPIAKMEVLYGKYDEERT---EKLTRVQLVETDLKALEPEL---RKAVNFLELEN---CV 330
+ + + K +ERT E+++ L++ D L+ E+ + F +
Sbjct: 161 GAVENIAM---KTPKERTALFEEISGSGLLKDDYNRLKQEMIVAEEETQFTYQKKKGIAA 217
Query: 331 QRKH--NEIYQYERYVNMKNLGEHETKVQQMEQELTA--NLE-SIKKCTDEMESAKTELK 385
+RK +E + +RY ++N E+ K Q+E +L ++E I+K T ++E + E+K
Sbjct: 218 ERKEAKHEKMEADRYTRLQN--EYNEK--QVEYQLFRLFHVERDIRKFTSDLEVRQQEVK 273
Query: 386 TVE 388
VE
Sbjct: 274 AVE 276
>GENEDB_PFALCIPARUM|MAL13P1.96 [details] [associations]
symbol:MAL13P1.96 "chromosome segregation
protein, putative" species:5833 "Plasmodium falciparum" [GO:0000070
"mitotic sister chromatid segregation" evidence=ISS]
InterPro:IPR010935 InterPro:IPR027120 Pfam:PF06470 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0046982 GO:GO:0007076 EMBL:AL844509
GO:GO:0000796 eggNOG:COG1196 SUPFAM:SSF75553 KO:K06674
PANTHER:PTHR18937:SF9 HSSP:P32908 HOGENOM:HOG000163792 OMA:CQNGKIP
RefSeq:XP_001349920.1 ProteinModelPortal:Q8IED2 IntAct:Q8IED2
MINT:MINT-1645015 PRIDE:Q8IED2 EnsemblProtists:MAL13P1.96:mRNA
GeneID:813987 KEGG:pfa:MAL13P1.96 EuPathDB:PlasmoDB:PF3D7_1318400
ProtClustDB:CLSZ2432256 Uniprot:Q8IED2
Length = 1218
Score = 217 (81.4 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 78/250 (31%), Positives = 129/250 (51%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFA 215
+FNAI G NGSGKSNV+D++ FV G + IR N+L L++K Q G +++ SV I F
Sbjct: 26 QFNAITGLNGSGKSNVLDAICFVMGINNLNLIRVNRLDELIYKQGQAG-ITKGSVTIKFN 84
Query: 216 QIIDKPNEEYEIIPGTDLE---IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLN 272
+KP+ E P D++ I R + Y LN K+++ + +++ N
Sbjct: 85 NE-EKPSPLQE--PYRDMKNITITRQIVLGGRNRYLLNSHNAKPKDISDFFQSLKLNINN 141
Query: 273 NRFLILQEPIAKM------EVLYGKYDEERTEKLTRVQ-------LVETDLKALEPELRK 319
FLI+Q I K+ E+L G +E KL V+ +V+ D K E+ K
Sbjct: 142 PHFLIMQGKITKVINMKPIELL-GLIEESSGTKLYEVKRTNAIKLMVKKDQKL--GEINK 198
Query: 320 AVNFLELENCVQRKHNEIYQYERYV-NMKNLGEHETKVQQMEQELTANLESIKKCTDEME 378
+ F E+E + + E +Y ++V N + + ++E KV+ + A + + KC +++E
Sbjct: 199 VL-FEEIEPTLVKLKKEKEEYNKFVSNNEEIEKYE-KVEIAYKYYVAK-KMMTKCEEKIE 255
Query: 379 SAKTELKTVE 388
AK+E K +E
Sbjct: 256 DAKSEEKILE 265
>UNIPROTKB|Q8IED2 [details] [associations]
symbol:MAL13P1.96 "Structural maintenance of chromosomes
protein 2" species:36329 "Plasmodium falciparum 3D7" [GO:0000070
"mitotic sister chromatid segregation" evidence=ISS] [GO:0000796
"condensin complex" evidence=ISS] [GO:0007076 "mitotic chromosome
condensation" evidence=ISS] [GO:0046982 "protein heterodimerization
activity" evidence=ISS] InterPro:IPR010935 InterPro:IPR027120
Pfam:PF06470 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005634 GO:GO:0051301 GO:GO:0046982
GO:GO:0007076 EMBL:AL844509 GO:GO:0000796 eggNOG:COG1196
SUPFAM:SSF75553 KO:K06674 PANTHER:PTHR18937:SF9 HSSP:P32908
HOGENOM:HOG000163792 OMA:CQNGKIP RefSeq:XP_001349920.1
ProteinModelPortal:Q8IED2 IntAct:Q8IED2 MINT:MINT-1645015
PRIDE:Q8IED2 EnsemblProtists:MAL13P1.96:mRNA GeneID:813987
KEGG:pfa:MAL13P1.96 EuPathDB:PlasmoDB:PF3D7_1318400
ProtClustDB:CLSZ2432256 Uniprot:Q8IED2
Length = 1218
Score = 217 (81.4 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 78/250 (31%), Positives = 129/250 (51%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYR-ASKIRANKLSVLMHKSDQVGGVSRCSVAIHFA 215
+FNAI G NGSGKSNV+D++ FV G + IR N+L L++K Q G +++ SV I F
Sbjct: 26 QFNAITGLNGSGKSNVLDAICFVMGINNLNLIRVNRLDELIYKQGQAG-ITKGSVTIKFN 84
Query: 216 QIIDKPNEEYEIIPGTDLE---IARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLN 272
+KP+ E P D++ I R + Y LN K+++ + +++ N
Sbjct: 85 NE-EKPSPLQE--PYRDMKNITITRQIVLGGRNRYLLNSHNAKPKDISDFFQSLKLNINN 141
Query: 273 NRFLILQEPIAKM------EVLYGKYDEERTEKLTRVQ-------LVETDLKALEPELRK 319
FLI+Q I K+ E+L G +E KL V+ +V+ D K E+ K
Sbjct: 142 PHFLIMQGKITKVINMKPIELL-GLIEESSGTKLYEVKRTNAIKLMVKKDQKL--GEINK 198
Query: 320 AVNFLELENCVQRKHNEIYQYERYV-NMKNLGEHETKVQQMEQELTANLESIKKCTDEME 378
+ F E+E + + E +Y ++V N + + ++E KV+ + A + + KC +++E
Sbjct: 199 VL-FEEIEPTLVKLKKEKEEYNKFVSNNEEIEKYE-KVEIAYKYYVAK-KMMTKCEEKIE 255
Query: 379 SAKTELKTVE 388
AK+E K +E
Sbjct: 256 DAKSEEKILE 265
>GENEDB_PFALCIPARUM|PF11_0317 [details] [associations]
symbol:PF11_0317 "structural maintenance of
chromosome protein, putative" species:5833 "Plasmodium falciparum"
[GO:0000070 "mitotic sister chromatid segregation" evidence=ISS]
[GO:0003680 "AT DNA binding" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0008278 "cohesin complex" evidence=ISS]
InterPro:IPR010935 Pfam:PF06470 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0016887 GO:GO:0000070
GO:GO:0003690 GO:GO:0003680 EMBL:AE014186 GO:GO:0008278
SUPFAM:SSF75553 KO:K06636 HSSP:Q9X0R4 RefSeq:XP_001347988.1
ProteinModelPortal:Q8II57 EnsemblProtists:PF11_0317:mRNA
GeneID:810864 KEGG:pfa:PF11_0317 EuPathDB:PlasmoDB:PF3D7_1130700
HOGENOM:HOG000282411 OMA:CEREASK ProtClustDB:CLSZ2515177
Uniprot:Q8II57
Length = 1818
Score = 163 (62.4 bits), Expect = 8.8e-13, Sum P(2) = 8.8e-13
Identities = 69/257 (26%), Positives = 124/257 (48%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKL-SVLMHKSDQVGGVSRCSVAIHFA 215
+F +IIGPNGSGKSN++D + F G +R L +++ HK ++ + I +
Sbjct: 313 KFTSIIGPNGSGKSNIMDCICFALGINNKYLRVKNLRNLIYHKENEKA--EDINKRICYV 370
Query: 216 QIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRF 275
+II + N+E ++EI RT Y S + +N K V KE LR + ++
Sbjct: 371 KIILECNKE-------NVEIKRTLNYKGVSNFYINDKLVDQKEYMNFLRKNRIETKTKTC 423
Query: 276 LILQ---------EP--IAKM-EVLYG--KYD---EERTEKLTRVQL----VETDLKALE 314
LI Q +P +AK+ E + G +Y+ E+ EKL Q+ + K +E
Sbjct: 424 LIFQGDIEDIINKKPNELAKLFEYISGSDEYEQIYEDIKEKLKEKQINCKNYLNEKKKIE 483
Query: 315 PELRKAVNFLEL-ENCVQRKHNEIYQYE-RYVNMKNLGEHETKVQQMEQELTA-NLESIK 371
E++ ++ +++ +N K E Y+YE + + L + K ++ +++L ES++
Sbjct: 484 QEMK--IHKIQMNDNIEHNKLKENYEYEIKLYYLFKLYHYFKKKEKFKEDLLLYKEESLQ 541
Query: 372 KCTDEMESAKTELKTVE 388
D + K + T+E
Sbjct: 542 FEQDILNQNKKKANTLE 558
Score = 92 (37.4 bits), Expect = 8.8e-13, Sum P(2) = 8.8e-13
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 125 EEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156
E IIG + +F +IIGPNGSGKSN++D + F
Sbjct: 305 ENIIGP--FSKFTSIIGPNGSGKSNIMDCICF 334
>UNIPROTKB|Q8II57 [details] [associations]
symbol:PF11_0317 "Structural maintenance of chromosome
protein, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0000070 "mitotic sister chromatid segregation" evidence=ISS]
[GO:0003680 "AT DNA binding" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0008278 "cohesin complex"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
InterPro:IPR010935 Pfam:PF06470 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0016887 GO:GO:0000070
GO:GO:0003690 GO:GO:0003680 EMBL:AE014186 GO:GO:0008278
SUPFAM:SSF75553 KO:K06636 HSSP:Q9X0R4 RefSeq:XP_001347988.1
ProteinModelPortal:Q8II57 EnsemblProtists:PF11_0317:mRNA
GeneID:810864 KEGG:pfa:PF11_0317 EuPathDB:PlasmoDB:PF3D7_1130700
HOGENOM:HOG000282411 OMA:CEREASK ProtClustDB:CLSZ2515177
Uniprot:Q8II57
Length = 1818
Score = 163 (62.4 bits), Expect = 8.8e-13, Sum P(2) = 8.8e-13
Identities = 69/257 (26%), Positives = 124/257 (48%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKL-SVLMHKSDQVGGVSRCSVAIHFA 215
+F +IIGPNGSGKSN++D + F G +R L +++ HK ++ + I +
Sbjct: 313 KFTSIIGPNGSGKSNIMDCICFALGINNKYLRVKNLRNLIYHKENEKA--EDINKRICYV 370
Query: 216 QIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRF 275
+II + N+E ++EI RT Y S + +N K V KE LR + ++
Sbjct: 371 KIILECNKE-------NVEIKRTLNYKGVSNFYINDKLVDQKEYMNFLRKNRIETKTKTC 423
Query: 276 LILQ---------EP--IAKM-EVLYG--KYD---EERTEKLTRVQL----VETDLKALE 314
LI Q +P +AK+ E + G +Y+ E+ EKL Q+ + K +E
Sbjct: 424 LIFQGDIEDIINKKPNELAKLFEYISGSDEYEQIYEDIKEKLKEKQINCKNYLNEKKKIE 483
Query: 315 PELRKAVNFLEL-ENCVQRKHNEIYQYE-RYVNMKNLGEHETKVQQMEQELTA-NLESIK 371
E++ ++ +++ +N K E Y+YE + + L + K ++ +++L ES++
Sbjct: 484 QEMK--IHKIQMNDNIEHNKLKENYEYEIKLYYLFKLYHYFKKKEKFKEDLLLYKEESLQ 541
Query: 372 KCTDEMESAKTELKTVE 388
D + K + T+E
Sbjct: 542 FEQDILNQNKKKANTLE 558
Score = 92 (37.4 bits), Expect = 8.8e-13, Sum P(2) = 8.8e-13
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 125 EEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156
E IIG + +F +IIGPNGSGKSN++D + F
Sbjct: 305 ENIIGP--FSKFTSIIGPNGSGKSNIMDCICF 334
>TAIR|locus:2167973 [details] [associations]
symbol:SMC2 "AT5G62410" species:3702 "Arabidopsis
thaliana" [GO:0005215 "transporter activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005694 "chromosome" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0000796 "condensin
complex" evidence=ISS] [GO:0000911 "cytokinesis by cell plate
formation" evidence=RCA] [GO:0006260 "DNA replication"
evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006270 "DNA replication initiation"
evidence=RCA] [GO:0006275 "regulation of DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0010389 "regulation of G2/M transition of mitotic
cell cycle" evidence=RCA] [GO:0016458 "gene silencing"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0031047 "gene silencing by RNA" evidence=RCA] [GO:0031048
"chromatin silencing by small RNA" evidence=RCA] [GO:0034968
"histone lysine methylation" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0051567
"histone H3-K9 methylation" evidence=RCA] [GO:0051607 "defense
response to virus" evidence=RCA] [GO:0051726 "regulation of cell
cycle" evidence=RCA] InterPro:IPR024704 InterPro:IPR010935
InterPro:IPR027120 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005634
GO:GO:0007126 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0051301
GO:GO:0007067 GO:GO:0006281 GO:GO:0005215 GO:GO:0006310
GO:GO:0030261 EMBL:AB015469 EMBL:AB019235 GO:GO:0000796
GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553 KO:K06674
PANTHER:PTHR18937:SF9 EMBL:AF271730 EMBL:AF271731 EMBL:AF306547
IPI:IPI00534765 RefSeq:NP_201047.1 UniGene:At.19029 HSSP:P32908
ProteinModelPortal:Q9C5Y4 SMR:Q9C5Y4 STRING:Q9C5Y4 PaxDb:Q9C5Y4
PRIDE:Q9C5Y4 EnsemblPlants:AT5G62410.1 GeneID:836362
KEGG:ath:AT5G62410 TAIR:At5g62410 HOGENOM:HOG000163792
InParanoid:Q9C5Y4 OMA:CQNGKIP PhylomeDB:Q9C5Y4
ProtClustDB:CLSN2685173 Genevestigator:Q9C5Y4 Uniprot:Q9C5Y4
Length = 1175
Score = 167 (63.8 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 64/203 (31%), Positives = 98/203 (48%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ FV G ++RA L L++K Q G +++ +V++ F
Sbjct: 27 FNAITGLNGSGKSNILDSICFVLGITNLQQVRAANLQELVYKQGQAG-ITKATVSVTFDN 85
Query: 217 IIDKPNE-EYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDL-LNN- 273
+ YE P ++ + R + Y +NGK +V + H V L +NN
Sbjct: 86 SERHRSPLGYEEHP--EITVTRQIVVGGRNKYLINGKLAQPSQVQNLF--HSVQLNVNNP 141
Query: 274 RFLILQEPIAKMEVLYGKYDE--ERTEKLTRVQLVETD----LKALEPELRKA--VNFL- 324
FLI+Q I K VL K E E+ ++ E LK LE + K +N L
Sbjct: 142 HFLIMQGRITK--VLNMKPPEILSMLEEAAGTRMYENKKEAALKTLEKKQTKVDEINKLL 199
Query: 325 --ELENCVQRKHNEIYQYERYVN 345
E+ +++ E QY ++ N
Sbjct: 200 DHEILPALEKLRKEKSQYMQWAN 222
Score = 82 (33.9 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 119 GLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156
G Y + + FNAI G NGSGKSN++DS+ F
Sbjct: 10 GFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICF 47
Score = 41 (19.5 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 347 KNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKT 386
K+L HE + +++L E++K+ +ES T L+T
Sbjct: 808 KDLKSHENE----KEKLVMEEEAMKQEQSSLESHLTSLET 843
>RGD|1308791 [details] [associations]
symbol:Smc1b "structural maintenance of chromosomes 1B"
species:10116 "Rattus norvegicus" [GO:0000775 "chromosome,
centromeric region" evidence=IEA;ISO] [GO:0000795 "synaptonemal
complex" evidence=ISO] [GO:0000800 "lateral element"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA;ISO]
[GO:0007126 "meiosis" evidence=IEA;ISO] [GO:0030261 "chromosome
condensation" evidence=IEA] [GO:0030893 "meiotic cohesin complex"
evidence=ISO] [GO:0034991 "nuclear meiotic cohesin complex"
evidence=IEA;ISO] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 RGD:1308791 GO:GO:0005524 GO:GO:0007126 GO:GO:0000775
GO:GO:0003677 GO:GO:0006281 GO:GO:0006310 GO:GO:0030261
GO:GO:0000800 EMBL:CH473950 GO:GO:0007062 SUPFAM:SSF75553
GO:GO:0030893 KO:K06636 GeneTree:ENSGT00580000081569 CTD:27127
OMA:QLYHNEK OrthoDB:EOG4RNB7M IPI:IPI00372956 RefSeq:NP_001123970.1
UniGene:Rn.56972 Ensembl:ENSRNOT00000044883 GeneID:300121
KEGG:rno:300121 NextBio:646377 Uniprot:D3ZE73
Length = 1247
Score = 152 (58.6 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 64/242 (26%), Positives = 104/242 (42%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF IIGPNGSGKSNV+D++ FV G + + +R + L+H + +G S ++
Sbjct: 26 RFTCIIGPNGSGKSNVMDALSFVMGEKTTNLRVKNIQELIHGA-HIGKPVSSSASVTIIY 84
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
+ D E+ T I R S + K V L + G+ + L
Sbjct: 85 VEDSGEEK------TFTRIIR----GGCSEFHFGDKPVSRSVYVAQLENIGIIVKAQNCL 134
Query: 277 ILQEPIAKMEVLYGKYDEERTEKLTRVQLVET---DLKALEPELRKA-----VNFLELEN 328
+ Q + + + K +ERT+ + + +A + +L+KA +F +N
Sbjct: 135 VFQGTVESISM---KKPKERTQFFEEISTSGEFIGEYEAKKKKLQKAEEDAQFHFNRKKN 191
Query: 329 -CVQRKHNEIYQYERYVNMKNLGEHET-KVQQMEQELTANLESIKKCTDEMESAKTELKT 386
+RKH +I + E L E +T K+Q M +L N E I E+E L
Sbjct: 192 VAAERKHAKIEKEEAEHYQSLLEELKTNKIQLMLFQLYYNEEKINVLNTELEHMDRNLSV 251
Query: 387 VE 388
V+
Sbjct: 252 VK 253
Score = 98 (39.6 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 126 EIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156
++IG +KRF IIGPNGSGKSNV+D++ F
Sbjct: 19 QVIGP--FKRFTCIIGPNGSGKSNVMDALSF 47
Score = 70 (29.7 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 29/102 (28%), Positives = 50/102 (49%)
Query: 292 YDEERTEKLT--RVQLVETDLKALEPELRKAVNFLELENCVQRKHNEI-Y-QYE-RYVNM 346
+DE+ L R QLV+ +LK L LRK + +++ VQ + + Y Q E +
Sbjct: 666 WDEKELHSLRDKRNQLVQ-ELKELMKTLRKETDLKQIQALVQGTNTRLKYSQNELEMIKK 724
Query: 347 KNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
K+L + Q++ EL N++S +CT E + + +E
Sbjct: 725 KHLATFYREQSQLQSELL-NIDS--QCTMLSEGINKQQQKIE 763
Score = 45 (20.9 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 84 NFKSYAGYVTLGPF 97
NFKS+ G +GPF
Sbjct: 11 NFKSWRGRQVIGPF 24
>MGI|MGI:2154049 [details] [associations]
symbol:Smc1b "structural maintenance of chromosomes 1B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IDA] [GO:0000795 "synaptonemal complex" evidence=IDA]
[GO:0000800 "lateral element" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007062
"sister chromatid cohesion" evidence=IDA] [GO:0007126 "meiosis"
evidence=IPI] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0030893 "meiotic cohesin complex" evidence=ISO;IDA] [GO:0034991
"nuclear meiotic cohesin complex" evidence=IDA] [GO:0051276
"chromosome organization" evidence=IEA] InterPro:IPR024704
InterPro:IPR010935 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 MGI:MGI:2154049 GO:GO:0005524
GO:GO:0007126 GO:GO:0005654 GO:GO:0000775 GO:GO:0003677
GO:GO:0006281 Reactome:REACT_118161 Reactome:REACT_120463
Reactome:REACT_75800 GO:GO:0006310 GO:GO:0030261 GO:GO:0000800
GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553 GO:GO:0034991
HOGENOM:HOG000195481 HOVERGEN:HBG039593 KO:K06636
GeneTree:ENSGT00580000081569 CTD:27127 OMA:QLYHNEK EMBL:AF303827
IPI:IPI00120490 RefSeq:NP_536718.1 UniGene:Mm.182737
ProteinModelPortal:Q920F6 SMR:Q920F6 STRING:Q920F6
PhosphoSite:Q920F6 PaxDb:Q920F6 PRIDE:Q920F6
Ensembl:ENSMUST00000023068 GeneID:140557 KEGG:mmu:140557
InParanoid:Q920F6 OrthoDB:EOG4RNB7M NextBio:369861 Bgee:Q920F6
CleanEx:MM_SMC1B Genevestigator:Q920F6
GermOnline:ENSMUSG00000022432 Uniprot:Q920F6
Length = 1248
Score = 150 (57.9 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 68/244 (27%), Positives = 106/244 (43%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF IIGPNGSGKSNV+D++ FV G + + +R + L+H + VS S ++
Sbjct: 26 RFTCIIGPNGSGKSNVMDALSFVMGEKTTNLRVKNIQELIHGAHTGKPVSS-SASVTIIY 84
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
I D E+ T I R S Y K V L + G+ + L
Sbjct: 85 IEDSGEEK------TFTRIIR----GGCSEYHFGDKPVSRSVYVAQLENIGIIVKAQNCL 134
Query: 277 ILQEPIAKMEVLYGKYDEERTEKLTRVQLVET---DLKALEPELRKA-----VNFLELEN 328
+ Q + + + K +ERT+ + + +A + +L+KA +F +N
Sbjct: 135 VFQGTVESISM---KKPKERTQFFEEISTSGEFIGEYEAKKKKLQKAEEDAQFHFNVKKN 191
Query: 329 -CVQRKHNEIY--QYERYVNMKNLGEHE-TKVQQMEQELTANLESIKKCTDEMESAKTEL 384
+RKH +I + E Y N+ L E + K+Q M +L N E I E+E L
Sbjct: 192 VAAERKHAKIEKEEAEHYQNL--LEELKINKIQLMLFQLYYNEEKINVLNTELEQMDGNL 249
Query: 385 KTVE 388
V+
Sbjct: 250 SVVK 253
Score = 98 (39.6 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 126 EIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156
++IG +KRF IIGPNGSGKSNV+D++ F
Sbjct: 19 QVIGP--FKRFTCIIGPNGSGKSNVMDALSF 47
Score = 73 (30.8 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 29/102 (28%), Positives = 50/102 (49%)
Query: 292 YDEERTEKLT--RVQLVETDLKALEPELRKAVNFLELENCVQRKHNEI-Y-QYE-RYVNM 346
+DE+ L R QLV+ +LK L LRK + +++ VQ + + Y Q E +
Sbjct: 666 WDEKELHNLRDKRSQLVQ-ELKELMKTLRKETDLKQIQTLVQGTNTRLKYSQNELEMIKK 724
Query: 347 KNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
K+L + Q++ EL N++S +CT E + + +E
Sbjct: 725 KHLATFYREQSQLQSELL-NIDS--QCTMLSEGINKQQQKIE 763
>UNIPROTKB|Q90988 [details] [associations]
symbol:SMC2 "Structural maintenance of chromosomes protein
2" species:9031 "Gallus gallus" [GO:0000796 "condensin complex"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0007062 "sister chromatid
cohesion" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR024704 InterPro:IPR010935 InterPro:IPR027120
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0005694 GO:GO:0051301 GO:GO:0007067 GO:GO:0006281
GO:GO:0006310 GO:GO:0030261 GO:GO:0007062 SUPFAM:SSF75553 KO:K06674
PANTHER:PTHR18937:SF9 EMBL:X80792 IPI:IPI00579121 PIR:A54817
RefSeq:NP_990561.1 UniGene:Gga.4066 ProteinModelPortal:Q90988
PRIDE:Q90988 GeneID:396156 KEGG:gga:396156 CTD:10592
HOVERGEN:HBG106605 NextBio:20816212 Uniprot:Q90988
Length = 1189
Score = 189 (71.6 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 67/243 (27%), Positives = 115/243 (47%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ F+ G S++RA+ L L++K+ Q G V++ +V+I F
Sbjct: 27 FNAITGLNGSGKSNILDSICFLLGISNLSQVRASSLQDLVYKNGQAG-VNKATVSITFDN 85
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
DK N ++ I R + Y +NG V + G+++ N FL
Sbjct: 86 S-DKKNSPLGFENNDEITITRQVIVGGRNKYLINGMNASNNRVQDLFGSVGLNVNNPHFL 144
Query: 277 ILQEPIAKM------EVLYGKYDEERT-----EKLTRVQLVETDLKALEPELRKAVNFLE 325
I+Q I K+ E+L + T +K+T + +E L+ E+R+ + E
Sbjct: 145 IMQGQITKVLNMKPTEILAMIEEAAGTRMYECKKITAHKTIEKKESKLD-EIRRIITE-E 202
Query: 326 LENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIK-KCTDEMESAKTEL 384
+ +++ Y Y M E+ ++ Q + A E IK + T+ ++ A+
Sbjct: 203 ISPTLEKLKEARASYLEYQKMTREVENLRRIYVAFQYVRA--EEIKDRSTNALKEAQANK 260
Query: 385 KTV 387
K +
Sbjct: 261 KKI 263
>SGD|S000001927 [details] [associations]
symbol:SMC2 "Subunit of the condensin complex" species:4932
"Saccharomyces cerevisiae" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0003680 "AT DNA binding" evidence=IDA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0030261 "chromosome
condensation" evidence=IEA] [GO:0000796 "condensin complex"
evidence=IEA] [GO:0000799 "nuclear condensin complex"
evidence=ISS;TAS;IPI] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0070058 "tRNA gene clustering" evidence=IMP]
[GO:0007076 "mitotic chromosome condensation" evidence=IEA;IMP;TAS]
[GO:0051301 "cell division" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0007067 "mitosis"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0000217 "DNA secondary
structure binding" evidence=IDA] [GO:0000070 "mitotic sister
chromatid segregation" evidence=TAS] [GO:0051276 "chromosome
organization" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
InterPro:IPR027120 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 SGD:S000001927 Pfam:PF02463 GO:GO:0005739
GO:GO:0005524 GO:GO:0051301 GO:GO:0006281 EMBL:D50617 EMBL:BK006940
GO:GO:0016887 GO:GO:0006310 GO:GO:0003690 GO:GO:0007076
GO:GO:0003680 GO:GO:0000799 GO:GO:0070058 GO:GO:0007062
eggNOG:COG1196 SUPFAM:SSF75553 EMBL:U05820
GeneTree:ENSGT00550000074857 KO:K06674 PANTHER:PTHR18937:SF9
GO:GO:0000217 HOGENOM:HOG000163792 OrthoDB:EOG4P2T9B PIR:A56157
RefSeq:NP_116687.1 ProteinModelPortal:P38989 SMR:P38989
DIP:DIP-2983N IntAct:P38989 MINT:MINT-435495 STRING:P38989
PaxDb:P38989 EnsemblFungi:YFR031C GeneID:850589 KEGG:sce:YFR031C
CYGD:YFR031c OMA:SECESAE NextBio:966434 Genevestigator:P38989
GermOnline:YFR031C Uniprot:P38989
Length = 1170
Score = 188 (71.2 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 67/242 (27%), Positives = 118/242 (48%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRA-SKIRANKLSVLMHKSDQVGGVSRCSVAIHFA 215
+FNAI G NGSGKSN++D++ FV G + S +RA+ L L++K Q G V++ SV I F
Sbjct: 26 QFNAITGLNGSGKSNILDAICFVLGIASMSTVRASSLQDLIYKRGQAG-VTKASVTIVFD 84
Query: 216 QIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRF 275
DK N + + R +S Y +NG + + V ++ + +++ N F
Sbjct: 85 NT-DKSNSPIGFTNSPQISVTRQVVLGGTSKYLINGHRAPQQSVLQLFQSVQLNINNPNF 143
Query: 276 LILQEPIAKM------EVLYGKYDEERTEKL--TRVQLVETDLKALEPELRKAVNFL--E 325
LI+Q I K+ E+L +E K+ R + E + E +L++ L E
Sbjct: 144 LIMQGKITKVLNMKPSEIL-SLIEEAAGTKMFEDRREKAERTMSKKETKLQENRTLLTEE 202
Query: 326 LENCVQRKHNEIYQYERYVNMK-NLGEHETKVQQMEQ-ELTANLESIKKCTDEMESAKTE 383
+E +++ NE + + + + +L + E V E + SI+ + +E+ +T
Sbjct: 203 IEPKLEKLRNEKRMFLEFQSTQTDLEKTERIVVSYEYYNIKHKHTSIR---ETLENGETR 259
Query: 384 LK 385
+K
Sbjct: 260 MK 261
>UNIPROTKB|F1SP73 [details] [associations]
symbol:F1SP73 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007076 "mitotic chromosome condensation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000796
"condensin complex" evidence=IEA] InterPro:IPR024704
InterPro:IPR010935 InterPro:IPR027120 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005694 GO:GO:0006281 GO:GO:0006310
GO:GO:0030261 GO:GO:0007062 SUPFAM:SSF75553
GeneTree:ENSGT00550000074857 PANTHER:PTHR18937:SF9 OMA:WIASERQ
Ensembl:ENSSSCT00000005947 Uniprot:F1SP73
Length = 1169
Score = 171 (65.3 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 43/129 (33%), Positives = 69/129 (53%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ F+ G S++RA+ L L++K+ Q G +++ SV+I F
Sbjct: 27 FNAITGLNGSGKSNILDSICFLLGISNLSQVRASNLQDLVYKNGQAG-ITKASVSITFDN 85
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
DK ++ + R + Y +NG + V + G+++ N FL
Sbjct: 86 S-DKKQSPLGFEVHDEITVTRQVVIGGRNKYLINGVNANNTRVQDLFCSVGLNVNNPHFL 144
Query: 277 ILQEPIAKM 285
I+Q I K+
Sbjct: 145 IMQGRITKV 153
Score = 64 (27.6 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 23/88 (26%), Positives = 44/88 (50%)
Query: 301 TRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQME 360
T+ +K + E+ +A+ LELE ++R+H Q VN + + +E ++ +
Sbjct: 781 TKADASSKKMKEKQQEV-EAIT-LELEE-LKREHASCEQQLEAVN-EAIKSYEGQIAVVA 836
Query: 361 QELTANLESIKKCTDEMESAKTELKTVE 388
E+ N ES+ K +E+ K E+ T +
Sbjct: 837 AEVAKNKESVNKAQEEVTKQK-EVITAQ 863
Score = 60 (26.2 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 26/96 (27%), Positives = 46/96 (47%)
Query: 279 QEPIAKMEVLYGKYDEERTEKLTRV-QLVETDLKALEPELRKAVNFLELENCVQRKHNEI 337
Q + KM+ Y K D+E E + ++ + +E ++K L E K + LE + R + +
Sbjct: 420 QTEVKKMDSGYRK-DQEALEAVKKLKEKLEAEMKKLNYEENKEESLLEKRRQLSRDISRL 478
Query: 338 YQ-YERYV-NMKNLGEHETKVQQMEQELTANLESIK 371
+ YE + NL + E+ L A+L S+K
Sbjct: 479 KETYEALLARFPNL---RFAYRDPEKGLVASLISVK 511
Score = 49 (22.3 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 22/91 (24%), Positives = 47/91 (51%)
Query: 307 ETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVN-MKNL-GEHETKVQQMEQELT 364
+ +L AL+ + ++ L+ +Q+K E +YE N MKN E E +++ +++L
Sbjct: 720 QEELDALKKIIEESEETLKNTKEIQKKAEE--KYEVLENKMKNAEAERERELKDAQRKLD 777
Query: 365 -------ANLESIKKCTDEMESAKTELKTVE 388
A+ + +K+ E+E+ EL+ ++
Sbjct: 778 SAKTKADASSKKMKEKQQEVEAITLELEELK 808
Score = 44 (20.5 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 16/78 (20%), Positives = 36/78 (46%)
Query: 316 ELRKAVNFLELENCVQRKHNEIYQYERYVN--MKNLGEHETKVQQMEQELTAN---LESI 370
E A + +N + + E Q + + + L +T+V++M+ + LE++
Sbjct: 381 EATLAGQMMACKNDISKAQTEAKQAQMKLKHAQQELKTKQTEVKKMDSGYRKDQEALEAV 440
Query: 371 KKCTDEMESAKTELKTVE 388
KK +++E+ +L E
Sbjct: 441 KKLKEKLEAEMKKLNYEE 458
Score = 37 (18.1 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 306 VETDLKALEPELRKAVNFL 324
V L +PEL+KA+ F+
Sbjct: 583 VALSLVEYKPELQKAMEFV 601
>UNIPROTKB|F6V533 [details] [associations]
symbol:SMC1B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030261 "chromosome condensation"
evidence=IEA] [GO:0007062 "sister chromatid cohesion" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR024704
InterPro:IPR010935 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
SUPFAM:SSF75553 GeneTree:ENSGT00580000081569 EMBL:AAEX03007228
EMBL:AAEX03007229 EMBL:AAEX03007230 Ensembl:ENSCAFT00000001296
Uniprot:F6V533
Length = 1079
Score = 140 (54.3 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 65/246 (26%), Positives = 110/246 (44%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF IIGPNGSGKSNV+D++ FV G + + +R + L+H + +G S ++
Sbjct: 26 RFTCIIGPNGSGKSNVMDALSFVMGEKTANLRVKNIQELIHGA-HIGRPVSSSASVKIVY 84
Query: 217 IIDKPNEEY--EIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNR 274
+ + E+ II G E F DN + + E+ K+ G+ +
Sbjct: 85 VEESGEEKTFTRIIRGGCSEFH---FDDNPV-----SRSAYIAELEKI----GIIVKARN 132
Query: 275 FLILQEPIAKMEVLYGKYDEERT---EKL-TRVQLV----ETDLKALEPELRKAVNFLEL 326
L+ Q + + + K +ERT E++ T +L+ E K + E NF +
Sbjct: 133 CLVFQGTVESISM---KKPKERTQFFEEISTSGELIGEYEEKKRKLQKAEEDAQFNFNKK 189
Query: 327 EN-CVQRKHNEIY--QYERYVNMKNLGEHE-TKVQQMEQELTANLESIKKCTDEMESAKT 382
+N +RKH ++ + ERY ++ L E + K+Q +L N + I E+E
Sbjct: 190 KNVAAERKHAKLEKEEAERYQSL--LEELKMNKIQLQLFQLYHNEKKIHFLNTELEHVSR 247
Query: 383 ELKTVE 388
L +
Sbjct: 248 NLSVTK 253
Score = 95 (38.5 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 126 EIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156
++IG ++RF IIGPNGSGKSNV+D++ F
Sbjct: 19 QVIGP--FRRFTCIIGPNGSGKSNVMDALSF 47
Score = 49 (22.3 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 84 NFKSYAGYVTLGPF 97
NFKS+ G+ +GPF
Sbjct: 11 NFKSWRGHQVIGPF 24
>UNIPROTKB|E2QRT5 [details] [associations]
symbol:SMC1B "Structural maintenance of chromosomes
protein" species:9615 "Canis lupus familiaris" [GO:0005634
"nucleus" evidence=IEA] [GO:0030261 "chromosome condensation"
evidence=IEA] [GO:0007062 "sister chromatid cohesion" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR024704
InterPro:IPR010935 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005634
GO:GO:0005694 GO:GO:0006281 GO:GO:0006310 GO:GO:0030261
GO:GO:0007062 SUPFAM:SSF75553 KO:K06636
GeneTree:ENSGT00580000081569 CTD:27127 OMA:QLYHNEK
EMBL:AAEX03007228 EMBL:AAEX03007229 EMBL:AAEX03007230
RefSeq:XP_538328.2 Ensembl:ENSCAFT00000001296
Ensembl:ENSCAFT00000049571 GeneID:481207 KEGG:cfa:481207
NextBio:20856062 Uniprot:E2QRT5
Length = 1235
Score = 140 (54.3 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 65/246 (26%), Positives = 110/246 (44%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF IIGPNGSGKSNV+D++ FV G + + +R + L+H + +G S ++
Sbjct: 26 RFTCIIGPNGSGKSNVMDALSFVMGEKTANLRVKNIQELIHGA-HIGRPVSSSASVKIVY 84
Query: 217 IIDKPNEEY--EIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNR 274
+ + E+ II G E F DN + + E+ K+ G+ +
Sbjct: 85 VEESGEEKTFTRIIRGGCSEFH---FDDNPV-----SRSAYIAELEKI----GIIVKARN 132
Query: 275 FLILQEPIAKMEVLYGKYDEERT---EKL-TRVQLV----ETDLKALEPELRKAVNFLEL 326
L+ Q + + + K +ERT E++ T +L+ E K + E NF +
Sbjct: 133 CLVFQGTVESISM---KKPKERTQFFEEISTSGELIGEYEEKKRKLQKAEEDAQFNFNKK 189
Query: 327 EN-CVQRKHNEIY--QYERYVNMKNLGEHE-TKVQQMEQELTANLESIKKCTDEMESAKT 382
+N +RKH ++ + ERY ++ L E + K+Q +L N + I E+E
Sbjct: 190 KNVAAERKHAKLEKEEAERYQSL--LEELKMNKIQLQLFQLYHNEKKIHFLNTELEHVSR 247
Query: 383 ELKTVE 388
L +
Sbjct: 248 NLSVTK 253
Score = 95 (38.5 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 126 EIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156
++IG ++RF IIGPNGSGKSNV+D++ F
Sbjct: 19 QVIGP--FRRFTCIIGPNGSGKSNVMDALSF 47
Score = 84 (34.6 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 31/102 (30%), Positives = 50/102 (49%)
Query: 292 YDEERTEKLT--RVQLVETDLKALEPELRKAVNFLELENCVQRKHNEI-Y-QYE-RYVNM 346
+DE+ + L R QL++ +LK L LRK + +++ VQ H + Y Q E +
Sbjct: 666 WDEKEIKNLRDRRAQLIQ-ELKDLMKILRKEADLKQIQTLVQGTHTRLKYSQSELEMIKK 724
Query: 347 KNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
K L + Q++ EL N+ES +CT E K + +E
Sbjct: 725 KQLAAFYREQSQLQSELL-NIES--QCTMLSEGIKERQQRIE 763
Score = 49 (22.3 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 84 NFKSYAGYVTLGPF 97
NFKS+ G+ +GPF
Sbjct: 11 NFKSWRGHQVIGPF 24
>UNIPROTKB|F1NX72 [details] [associations]
symbol:SMC1B "Structural maintenance of chromosomes
protein" species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0007062 "sister chromatid cohesion" evidence=IEA]
[GO:0030261 "chromosome condensation" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
SUPFAM:SSF75553 GeneTree:ENSGT00580000081569 EMBL:AADN02006734
IPI:IPI00577909 Ensembl:ENSGALT00000023006 Uniprot:F1NX72
Length = 1234
Score = 135 (52.6 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 67/252 (26%), Positives = 116/252 (46%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGV--SRCSVAIHF 214
RFN IIGPNGSGKSN++D++ FV + S +R + L+H + VG S SV I +
Sbjct: 26 RFNCIIGPNGSGKSNIMDAVSFVLCEKISNLRVKSVRELIHGA-HVGKPVSSTASVKIVY 84
Query: 215 AQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNR 274
+ + EE T + R D S Y N K + L G+ +
Sbjct: 85 CE---EDGEEK-----TFSRVIR----DGCSEYIFNDKSITRSAYISELEKIGILVKARN 132
Query: 275 FLILQEPIAKMEVLYGKYDEERTEKLTRV----QLVETDLKALEPELRKA-----VNFLE 325
LI Q + + + K +ERT+ ++ Q E + + + ++++A N+ +
Sbjct: 133 CLIFQGTVESIAM---KKPKERTQLFEQISNSWQYAE-EYERKKKKMQQAEEDAHFNYNK 188
Query: 326 LEN-CVQRKHNEIY--QYERY-VNMKNLGEHETKVQQME-QELTANLESIKKCTDE--ME 378
+N +RK ++ + E Y + ++ L + ++Q + ++ES+K+ DE ME
Sbjct: 189 KKNIAAERKQAKVEKEEAEHYQMLVRELNANRVQLQLFQLYHNERSIESLKESLDEKNME 248
Query: 379 SA--KTELKTVE 388
+ K L T E
Sbjct: 249 ARIKKDSLSTAE 260
Score = 100 (40.3 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 125 EEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156
E++IG + RFN IIGPNGSGKSN++D++ F
Sbjct: 18 EQLIGP--FMRFNCIIGPNGSGKSNIMDAVSF 47
Score = 39 (18.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 84 NFKSYAGYVTLGPF 97
+FKS+ G +GPF
Sbjct: 11 DFKSWRGEQLIGPF 24
>UNIPROTKB|F1NX73 [details] [associations]
symbol:SMC1B "Structural maintenance of chromosomes
protein" species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0030261 "chromosome
condensation" evidence=IEA] [GO:0000775 "chromosome, centromeric
region" evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0034991 "nuclear meiotic cohesin complex"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0007126 GO:GO:0000775 GO:GO:0003677
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0000800
GO:GO:0007062 SUPFAM:SSF75553 GO:GO:0030893
GeneTree:ENSGT00580000081569 OMA:QLYHNEK EMBL:AADN02006734
IPI:IPI00572844 Ensembl:ENSGALT00000023005 Uniprot:F1NX73
Length = 1238
Score = 135 (52.6 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 67/252 (26%), Positives = 116/252 (46%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGV--SRCSVAIHF 214
RFN IIGPNGSGKSN++D++ FV + S +R + L+H + VG S SV I +
Sbjct: 26 RFNCIIGPNGSGKSNIMDAVSFVLCEKISNLRVKSVRELIHGA-HVGKPVSSTASVKIVY 84
Query: 215 AQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNR 274
+ + EE T + R D S Y N K + L G+ +
Sbjct: 85 CE---EDGEEK-----TFSRVIR----DGCSEYIFNDKSITRSAYISELEKIGILVKARN 132
Query: 275 FLILQEPIAKMEVLYGKYDEERTEKLTRV----QLVETDLKALEPELRKA-----VNFLE 325
LI Q + + + K +ERT+ ++ Q E + + + ++++A N+ +
Sbjct: 133 CLIFQGTVESIAM---KKPKERTQLFEQISNSWQYAE-EYERKKKKMQQAEEDAHFNYNK 188
Query: 326 LEN-CVQRKHNEIY--QYERY-VNMKNLGEHETKVQQME-QELTANLESIKKCTDE--ME 378
+N +RK ++ + E Y + ++ L + ++Q + ++ES+K+ DE ME
Sbjct: 189 KKNIAAERKQAKVEKEEAEHYQMLVRELNANRVQLQLFQLYHNERSIESLKESLDEKNME 248
Query: 379 SA--KTELKTVE 388
+ K L T E
Sbjct: 249 ARIKKDSLSTAE 260
Score = 100 (40.3 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 125 EEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156
E++IG + RFN IIGPNGSGKSN++D++ F
Sbjct: 18 EQLIGP--FMRFNCIIGPNGSGKSNIMDAVSF 47
Score = 39 (18.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 84 NFKSYAGYVTLGPF 97
+FKS+ G +GPF
Sbjct: 11 DFKSWRGEQLIGPF 24
>UNIPROTKB|E1C614 [details] [associations]
symbol:E1C614 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000796 "condensin complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007076 "mitotic
chromosome condensation" evidence=IEA] InterPro:IPR010935
InterPro:IPR027120 Pfam:PF06470 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005694 GO:GO:0051276
SUPFAM:SSF75553 GeneTree:ENSGT00550000074857 PANTHER:PTHR18937:SF9
EMBL:AADN02057751 EMBL:AADN02057752 EMBL:AADN02057753
EMBL:AADN02057754 EMBL:AADN02057755 IPI:IPI00819568
Ensembl:ENSGALT00000037605 OMA:FESINES ArrayExpress:E1C614
Uniprot:E1C614
Length = 1149
Score = 183 (69.5 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 67/245 (27%), Positives = 114/245 (46%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ F+ G S++RA+ L L++K+ Q G V++ +V+I F
Sbjct: 27 FNAITGLNGSGKSNILDSICFLLGISNLSQVRASSLQDLVYKNGQAG-VNKATVSITFDN 85
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
DK N ++ I R + Y +NG V + G+++ N FL
Sbjct: 86 S-DKKNSPLGFENNDEITITRQVIVGGRNKYLINGMNASNNRVQDLFGSVGLNVNNPHFL 144
Query: 277 ILQEPIAKM------EVLYGKYDEERTE-------KLTRVQLVETDLKALEPELRKAVNF 323
I+Q I K+ E+L +E K+T + +E L+ E+R+ +
Sbjct: 145 IMQGQITKVLNMKPTEIL-AMIEEAAAGTRMYECMKITAHKTIEKKESKLD-EIRRIITE 202
Query: 324 LELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIK-KCTDEMESAKT 382
E+ +++ Y Y M E+ ++ Q + A E IK + T+ ++ A+
Sbjct: 203 -EISPTLEKLKEARASYLEYQKMTREVENLRRIYVAFQYVRA--EEIKDRSTNALKEAQA 259
Query: 383 ELKTV 387
K +
Sbjct: 260 NKKKI 264
>UNIPROTKB|E1C610 [details] [associations]
symbol:E1C610 "Structural maintenance of chromosomes
protein" species:9031 "Gallus gallus" [GO:0000796 "condensin
complex" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0007062 "sister chromatid
cohesion" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR024704 InterPro:IPR010935 InterPro:IPR027120
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
SUPFAM:SSF75553 GeneTree:ENSGT00550000074857 PANTHER:PTHR18937:SF9
EMBL:AADN02057751 EMBL:AADN02057752 EMBL:AADN02057753
EMBL:AADN02057754 EMBL:AADN02057755 IPI:IPI00823281
Ensembl:ENSGALT00000037611 ArrayExpress:E1C610 Uniprot:E1C610
Length = 1173
Score = 183 (69.5 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 67/244 (27%), Positives = 115/244 (47%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ F+ G S++RA+ L L++K+ Q G V++ +V+I F
Sbjct: 27 FNAITGLNGSGKSNILDSICFLLGISNLSQVRASSLQDLVYKNGQAG-VNKATVSITFDN 85
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
DK N ++ I R + Y +NG V + G+++ N FL
Sbjct: 86 S-DKKNSPLGFENNDEITITRQVIVGGRNKYLINGMNASNNRVQDLFGSVGLNVNNPHFL 144
Query: 277 ILQE-PIAKM------EVLYGKYDEERTE-----KLTRVQLVETDLKALEPELRKAVNFL 324
I+Q+ I K+ E+L + T K+T + +E L+ E+R+ +
Sbjct: 145 IMQQGQITKVLNMKPTEILAMIEEAAGTRMYECMKITAHKTIEKKESKLD-EIRRIITE- 202
Query: 325 ELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIK-KCTDEMESAKTE 383
E+ +++ Y Y M E+ ++ Q + A E IK + T+ ++ A+
Sbjct: 203 EISPTLEKLKEARASYLEYQKMTREVENLRRIYVAFQYVRA--EEIKDRSTNALKEAQAN 260
Query: 384 LKTV 387
K +
Sbjct: 261 KKKI 264
>UNIPROTKB|E1C612 [details] [associations]
symbol:E1C612 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000796 "condensin complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007076 "mitotic
chromosome condensation" evidence=IEA] InterPro:IPR010935
InterPro:IPR027120 Pfam:PF06470 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005694 GO:GO:0051276
SUPFAM:SSF75553 GeneTree:ENSGT00550000074857 PANTHER:PTHR18937:SF9
EMBL:AADN02057751 EMBL:AADN02057752 EMBL:AADN02057753
EMBL:AADN02057754 EMBL:AADN02057755 IPI:IPI00819262
Ensembl:ENSGALT00000037609 ArrayExpress:E1C612 Uniprot:E1C612
Length = 1173
Score = 183 (69.5 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 67/244 (27%), Positives = 115/244 (47%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ F+ G S++RA+ L L++K+ Q G V++ +V+I F
Sbjct: 27 FNAITGLNGSGKSNILDSICFLLGISNLSQVRASSLQDLVYKNGQAG-VNKATVSITFDN 85
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
DK N ++ I R + Y +NG V + G+++ N FL
Sbjct: 86 S-DKKNSPLGFENNDEITITRQVIVGGRNKYLINGMNASNNRVQDLFGSVGLNVNNPHFL 144
Query: 277 ILQE-PIAKM------EVLYGKYDEERTE-----KLTRVQLVETDLKALEPELRKAVNFL 324
I+Q+ I K+ E+L + T K+T + +E L+ E+R+ +
Sbjct: 145 IMQQGQITKVLNMKPTEILAMIEEAAGTRMYECMKITAHKTIEKKESKLD-EIRRIITE- 202
Query: 325 ELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIK-KCTDEMESAKTE 383
E+ +++ Y Y M E+ ++ Q + A E IK + T+ ++ A+
Sbjct: 203 EISPTLEKLKEARASYLEYQKMTREVENLRRIYVAFQYVRA--EEIKDRSTNALKEAQAN 260
Query: 384 LKTV 387
K +
Sbjct: 261 KKKI 264
>UNIPROTKB|Q8NDV3 [details] [associations]
symbol:SMC1B "Structural maintenance of chromosomes protein
1B" species:9606 "Homo sapiens" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0030261 "chromosome condensation" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000800 "lateral element"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0007062
"sister chromatid cohesion" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0034991 "nuclear meiotic cohesin complex"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0030893 "meiotic cohesin complex" evidence=IDA]
InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0007126 Reactome:REACT_115566 GO:GO:0000775
GO:GO:0003677 GO:GO:0006281 Reactome:REACT_111183 GO:GO:0006310
GO:GO:0030261 GO:GO:0000800 GO:GO:0007062 eggNOG:COG1196
SUPFAM:SSF75553 EMBL:AL008718 EMBL:AL021391 GO:GO:0030893
HOVERGEN:HBG039593 KO:K06636 EMBL:AJ504806 EMBL:BC126208
EMBL:AK125736 IPI:IPI00479260 IPI:IPI00807400 IPI:IPI00893258
RefSeq:NP_683515.3 UniGene:Hs.334176 ProteinModelPortal:Q8NDV3
SMR:Q8NDV3 STRING:Q8NDV3 PhosphoSite:Q8NDV3 DMDM:57015410
PaxDb:Q8NDV3 PRIDE:Q8NDV3 Ensembl:ENST00000357450
Ensembl:ENST00000404354 GeneID:27127 KEGG:hsa:27127 UCSC:uc003bgc.3
UCSC:uc003bgd.3 CTD:27127 GeneCards:GC22M045739 H-InvDB:HIX0027884
HGNC:HGNC:11112 HPA:HPA001500 MIM:608685 neXtProt:NX_Q8NDV3
PharmGKB:PA35962 OMA:QLYHNEK GenomeRNAi:27127 NextBio:49836
Bgee:Q8NDV3 CleanEx:HS_SMC1B Genevestigator:Q8NDV3
GermOnline:ENSG00000077935 Uniprot:Q8NDV3
Length = 1235
Score = 138 (53.6 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 65/242 (26%), Positives = 111/242 (45%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF IIGPNGSGKSNV+D++ FV G + + +R + L+H + +G S ++
Sbjct: 26 RFTCIIGPNGSGKSNVMDALSFVMGEKIANLRVKNIQELIHGA-HIGKPISSSASVKIIY 84
Query: 217 IIDKPNEEY--EIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNR 274
+ + E+ II G E F DN L + V+ E+ K+ G+ +
Sbjct: 85 VEESGEEKTFARIIRGGCSEFR---FNDN-----LVSRSVYIAELEKI----GIIVKAQN 132
Query: 275 FLILQEPIAKMEVLYGKYDEERT---EKL-TRVQLV----ETDLKALEPELRKAVNFLEL 326
L+ Q + + V K +ERT E++ T +L+ E K + E NF +
Sbjct: 133 CLVFQGTVESISV---KKPKERTQFFEEISTSGELIGEYEEKKRKLQKAEEDAQFNFNKK 189
Query: 327 EN-CVQRKHNEIY--QYERYVNMKNLGEHE-TKVQQMEQELTANLESIKKCTDEMESAKT 382
+N +R+ ++ + ERY ++ L E + K+Q +L N + I ++E
Sbjct: 190 KNIAAERRQAKLEKEEAERYQSL--LEELKMNKIQLQLFQLYHNEKKIHLLNTKLEHVNR 247
Query: 383 EL 384
+L
Sbjct: 248 DL 249
Score = 95 (38.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 126 EIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156
++IG ++RF IIGPNGSGKSNV+D++ F
Sbjct: 19 QVIGP--FRRFTCIIGPNGSGKSNVMDALSF 47
>UNIPROTKB|E1C782 [details] [associations]
symbol:E1C782 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000796 "condensin complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007076 "mitotic
chromosome condensation" evidence=IEA] InterPro:IPR010935
InterPro:IPR027120 Pfam:PF06470 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005694 GO:GO:0051276
SUPFAM:SSF75553 GeneTree:ENSGT00550000074857 PANTHER:PTHR18937:SF9
IPI:IPI00579121 EMBL:AADN02057751 EMBL:AADN02057752
EMBL:AADN02057753 EMBL:AADN02057754 EMBL:AADN02057755
Ensembl:ENSGALT00000025306 ArrayExpress:E1C782 Uniprot:E1C782
Length = 1190
Score = 183 (69.5 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 67/244 (27%), Positives = 115/244 (47%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ F+ G S++RA+ L L++K+ Q G V++ +V+I F
Sbjct: 27 FNAITGLNGSGKSNILDSICFLLGISNLSQVRASSLQDLVYKNGQAG-VNKATVSITFDN 85
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
DK N ++ I R + Y +NG V + G+++ N FL
Sbjct: 86 S-DKKNSPLGFENNDEITITRQVIVGGRNKYLINGMNASNNRVQDLFGSVGLNVNNPHFL 144
Query: 277 ILQE-PIAKM------EVLYGKYDEERTE-----KLTRVQLVETDLKALEPELRKAVNFL 324
I+Q+ I K+ E+L + T K+T + +E L+ E+R+ +
Sbjct: 145 IMQQGQITKVLNMKPTEILAMIEEAAGTRMYECMKITAHKTIEKKESKLD-EIRRIITE- 202
Query: 325 ELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIK-KCTDEMESAKTE 383
E+ +++ Y Y M E+ ++ Q + A E IK + T+ ++ A+
Sbjct: 203 EISPTLEKLKEARASYLEYQKMTREVENLRRIYVAFQYVRA--EEIKDRSTNALKEAQAN 260
Query: 384 LKTV 387
K +
Sbjct: 261 KKKI 264
>UNIPROTKB|E2R7R8 [details] [associations]
symbol:SMC2 "Structural maintenance of chromosomes protein"
species:9615 "Canis lupus familiaris" [GO:0051383 "kinetochore
organization" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0045132 "meiotic chromosome
segregation" evidence=IEA] [GO:0010032 "meiotic chromosome
condensation" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0000796 "condensin complex" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
InterPro:IPR027120 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005737
GO:GO:0006281 GO:GO:0006310 GO:GO:0007076 GO:GO:0000228
GO:GO:0000796 GO:GO:0007062 SUPFAM:SSF75553
GeneTree:ENSGT00550000074857 PANTHER:PTHR18937:SF9 OMA:CQNGKIP
EMBL:AAEX03008008 Ensembl:ENSCAFT00000004208 Uniprot:E2R7R8
Length = 1191
Score = 183 (69.5 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 61/238 (25%), Positives = 115/238 (48%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ F+ G S++RA+ L L++K+ Q G +++ SV+I F
Sbjct: 27 FNAITGLNGSGKSNILDSICFLLGISNLSQVRASNLQDLVYKNGQAG-ITKASVSITFDN 85
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
DK ++ + R + Y +NG + V + G+++ N FL
Sbjct: 86 S-DKKQSPLGFEVHDEITVTRQVVIGGRNKYLINGVNANNSRVQDLFCSVGLNVNNPHFL 144
Query: 277 ILQEPIAKM------EVLYGKYDEERTEKLTRVQLV--ETDLKALEPELRKAVNFLELE- 327
I+Q I K+ E+L +E ++ + + + ++ E +L++ LE E
Sbjct: 145 IMQGRITKVLNMKPPEIL-SMIEEAAGTRMYEYKKIAAQKTIEKKEAKLKEIKTILEEEI 203
Query: 328 -NCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTEL 384
+Q+ E Y Y + EH +++ Q L A ++ ++ +E++ + ++
Sbjct: 204 TPTIQKLKEERSSYLEYQKIMREIEHLSRLYIAYQFLLAE-DTKERSAEELKEMQDKV 260
>UNIPROTKB|E1C611 [details] [associations]
symbol:E1C611 "Structural maintenance of chromosomes
protein" species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0007062 "sister chromatid
cohesion" evidence=IEA] [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0000796 "condensin complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0007076 "mitotic
chromosome condensation" evidence=IEA] [GO:0010032 "meiotic
chromosome condensation" evidence=IEA] [GO:0045132 "meiotic
chromosome segregation" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0051383 "kinetochore
organization" evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
InterPro:IPR027120 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005737
GO:GO:0006281 GO:GO:0006310 GO:GO:0007076 GO:GO:0000228
GO:GO:0000796 GO:GO:0007062 SUPFAM:SSF75553
GeneTree:ENSGT00550000074857 PANTHER:PTHR18937:SF9
EMBL:AADN02057751 EMBL:AADN02057752 EMBL:AADN02057753
EMBL:AADN02057754 EMBL:AADN02057755 IPI:IPI00818627
Ensembl:ENSGALT00000037610 ArrayExpress:E1C611 Uniprot:E1C611
Length = 1192
Score = 183 (69.5 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 67/244 (27%), Positives = 115/244 (47%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ F+ G S++RA+ L L++K+ Q G V++ +V+I F
Sbjct: 27 FNAITGLNGSGKSNILDSICFLLGISNLSQVRASSLQDLVYKNGQAG-VNKATVSITFDN 85
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
DK N ++ I R + Y +NG V + G+++ N FL
Sbjct: 86 S-DKKNSPLGFENNDEITITRQVIVGGRNKYLINGMNASNNRVQDLFGSVGLNVNNPHFL 144
Query: 277 ILQE-PIAKM------EVLYGKYDEERTE-----KLTRVQLVETDLKALEPELRKAVNFL 324
I+Q+ I K+ E+L + T K+T + +E L+ E+R+ +
Sbjct: 145 IMQQGQITKVLNMKPTEILAMIEEAAGTRMYECMKITAHKTIEKKESKLD-EIRRIITE- 202
Query: 325 ELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIK-KCTDEMESAKTE 383
E+ +++ Y Y M E+ ++ Q + A E IK + T+ ++ A+
Sbjct: 203 EISPTLEKLKEARASYLEYQKMTREVENLRRIYVAFQYVRA--EEIKDRSTNALKEAQAN 260
Query: 384 LKTV 387
K +
Sbjct: 261 KKKI 264
>UNIPROTKB|O95347 [details] [associations]
symbol:SMC2 "Structural maintenance of chromosomes protein
2" species:9606 "Homo sapiens" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0010032 "meiotic chromosome condensation"
evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0051383 "kinetochore organization" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000796 "condensin
complex" evidence=IDA] [GO:0000228 "nuclear chromosome"
evidence=IDA] [GO:0007076 "mitotic chromosome condensation"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0000793
"condensed chromosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR024704 InterPro:IPR010935
InterPro:IPR027120 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005737
Reactome:REACT_115566 Reactome:REACT_21300
Pathway_Interaction_DB:aurora_b_pathway GO:GO:0051301 GO:GO:0006281
GO:GO:0006310 EMBL:CH471105 GO:GO:0007076 GO:GO:0000228
GO:GO:0000796 GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553
KO:K06674 PANTHER:PTHR18937:SF9 HOGENOM:HOG000228249 OMA:CQNGKIP
CTD:10592 HOVERGEN:HBG106605 EMBL:AF092563 EMBL:AL833191
EMBL:AL161791 EMBL:AL354938 EMBL:BC130385 EMBL:AF113673
EMBL:BN000163 IPI:IPI00007927 IPI:IPI00232806 RefSeq:NP_001036015.1
RefSeq:NP_001036016.1 RefSeq:NP_001252531.1 RefSeq:NP_006435.2
UniGene:Hs.119023 ProteinModelPortal:O95347 SMR:O95347
DIP:DIP-35422N IntAct:O95347 MINT:MINT-1161754 STRING:O95347
PhosphoSite:O95347 PaxDb:O95347 PRIDE:O95347
Ensembl:ENST00000286398 Ensembl:ENST00000303219
Ensembl:ENST00000374787 Ensembl:ENST00000374793
Ensembl:ENST00000493955 GeneID:10592 KEGG:hsa:10592 UCSC:uc004bbv.3
GeneCards:GC09P106856 H-InvDB:HIX0008250 HGNC:HGNC:14011 MIM:605576
neXtProt:NX_O95347 PharmGKB:PA37833 InParanoid:O95347
OrthoDB:EOG49S65K ChiTaRS:SMC2 GenomeRNAi:10592 NextBio:40225
ArrayExpress:O95347 Bgee:O95347 CleanEx:HS_SMC2
Genevestigator:O95347 GermOnline:ENSG00000136824 Uniprot:O95347
Length = 1197
Score = 183 (69.5 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 65/244 (26%), Positives = 115/244 (47%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ F+ G S++RA+ L L++K+ Q G +++ SV+I F
Sbjct: 27 FNAITGLNGSGKSNILDSICFLLGISNLSQVRASNLQDLVYKNGQAG-ITKASVSITFDN 85
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
DK ++ + R + Y +NG + V + G+++ N FL
Sbjct: 86 S-DKKQSPLGFEVHDEITVTRQVVIGGRNKYLINGVNANNTRVQDLFCSVGLNVNNPHFL 144
Query: 277 ILQEPIAKM------EVLYGKYDEERTEKLTRVQLV--ETDLKALEPELRKAVNFLELE- 327
I+Q I K+ E+L +E ++ + + + ++ E +L++ LE E
Sbjct: 145 IMQGRITKVLNMKPPEIL-SMIEEAAGTRMYEYKKIAAQKTIEKKEAKLKEIKTILEEEI 203
Query: 328 -NCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTA------NLESIKKCTDEMESA 380
+Q+ E Y Y + EH +++ Q L A + E +K+ D++
Sbjct: 204 TPTIQKLKEERSSYLEYQKVMREIEHLSRLYIAYQFLLAEDTKVRSAEELKEMQDKVIKL 263
Query: 381 KTEL 384
+ EL
Sbjct: 264 QEEL 267
>MGI|MGI:106067 [details] [associations]
symbol:Smc2 "structural maintenance of chromosomes 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=ISO]
[GO:0000793 "condensed chromosome" evidence=ISO;IDA] [GO:0000796
"condensin complex" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0007067 "mitosis"
evidence=IEA] [GO:0007076 "mitotic chromosome condensation"
evidence=ISO] [GO:0010032 "meiotic chromosome condensation"
evidence=IMP] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0045132 "meiotic chromosome segregation" evidence=IMP]
[GO:0046982 "protein heterodimerization activity" evidence=ISO]
[GO:0051276 "chromosome organization" evidence=IEA] [GO:0051301
"cell division" evidence=IEA] [GO:0051383 "kinetochore
organization" evidence=IMP] InterPro:IPR024704 InterPro:IPR010935
InterPro:IPR027120 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 MGI:MGI:106067 GO:GO:0005524
GO:GO:0005737 GO:GO:0051301 GO:GO:0006281 EMBL:CH466565
GO:GO:0006310 GO:GO:0045132 GO:GO:0000793 GO:GO:0007076
GO:GO:0051383 GO:GO:0000228 GO:GO:0000796 GO:GO:0010032
GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553
GeneTree:ENSGT00550000074857 KO:K06674 PANTHER:PTHR18937:SF9
OMA:CQNGKIP CTD:10592 HOVERGEN:HBG106605 OrthoDB:EOG49S65K
EMBL:AJ534939 EMBL:AK013109 EMBL:AK019977 EMBL:AL732619
EMBL:BC094380 EMBL:U42385 IPI:IPI00987134 RefSeq:NP_032043.3
UniGene:Mm.2999 PDB:3L51 PDBsum:3L51 ProteinModelPortal:Q8CG48
SMR:Q8CG48 IntAct:Q8CG48 STRING:Q8CG48 PhosphoSite:Q8CG48
PaxDb:Q8CG48 PRIDE:Q8CG48 Ensembl:ENSMUST00000102915
Ensembl:ENSMUST00000117280 GeneID:14211 KEGG:mmu:14211
InParanoid:Q52KE9 EvolutionaryTrace:Q8CG48 NextBio:285461
Bgee:Q8CG48 CleanEx:MM_SMC2 Genevestigator:Q8CG48
GermOnline:ENSMUSG00000028312 Uniprot:Q8CG48
Length = 1191
Score = 182 (69.1 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 61/242 (25%), Positives = 116/242 (47%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ F+ G S++RA+ L L++K+ Q G +++ SV+I F
Sbjct: 27 FNAITGLNGSGKSNILDSICFLLGISNLSQVRASNLQDLVYKNGQAG-ITKASVSITFDN 85
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
DK ++ + R + Y +NG + V + G+++ N FL
Sbjct: 86 S-DKKQSPLGFEAHDEITVTRQVVIGGRNKYLINGVNANNTRVQDLFCSVGLNVNNPHFL 144
Query: 277 ILQEPIAKM------EVLYGKYDEERTEKLTRVQLV--ETDLKALEPELRKAVNFLELE- 327
I+Q I K+ E+L +E ++ + + + ++ E +L++ LE E
Sbjct: 145 IMQGRITKVLNMKPPEIL-SMIEEAAGTRMYEYKKIAAQKTIEKKEAKLKEIKTILEEEI 203
Query: 328 -NCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKT 386
+Q+ E Y Y + EH +++ Q L A ++ ++ E++ + ++
Sbjct: 204 TPTIQKLKEERSSYLEYQKVMREIEHLSRLYIAYQFLRAE-DTKERSAGELKEMQDKIVN 262
Query: 387 VE 388
++
Sbjct: 263 LQ 264
>UNIPROTKB|G8JLG1 [details] [associations]
symbol:SMC1A "Structural maintenance of chromosomes protein
1A" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] InterPro:IPR010935
Pfam:PF06470 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005694 GO:GO:0051276 SUPFAM:SSF75553
EMBL:Z97054 EMBL:AL161779 HGNC:HGNC:11111 ChiTaRS:SMC1A
ProteinModelPortal:G8JLG1 SMR:G8JLG1 Ensembl:ENST00000375340
Bgee:G8JLG1 Uniprot:G8JLG1
Length = 516
Score = 177 (67.4 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 68/232 (29%), Positives = 106/232 (45%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVG--GVSRCSVAIHF 214
RF AIIGPNGSGKSN++D++ FV G + S +R L L+H + VG +R V++ +
Sbjct: 26 RFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAP-VGKPAANRAFVSMVY 84
Query: 215 AQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNR 274
++ E E D AR SS Y +N K V E ++ L G+ +
Sbjct: 85 SE------EGAE-----DRTFARV-IVGGSSEYKINNKVVQLHEYSEELEKLGILIKARN 132
Query: 275 FLILQEPIAKMEVLYGKYDE------ERTEKLTRVQLVETDLKALEPELRKAVNFLELEN 328
FL+ Q + K L + + + EK R Q + D LE E +K +++
Sbjct: 133 FLVFQ--VKKYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLE-ERKKVETEAKIKQ 189
Query: 329 C---VQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEM 377
++ I + E Y+ E K ++E ELT +E K+ DE+
Sbjct: 190 KLREIEENQKRIEKLEEYITTSKQSLEEQK--KLEGELTEEVEMAKRRIDEI 239
Score = 128 (50.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 72/269 (26%), Positives = 120/269 (44%)
Query: 126 EIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRAS 185
+IIG ++RF AIIGPNGSGKSN++D++ F ++G S V + G
Sbjct: 19 QIIGP--FQRFTAIIGPNGSGKSNLMDAISF----VLGEKTSNL-RVKTLRDLIHGAPVG 71
Query: 186 KIRANKLSVLMHKSDQ-----------VGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLE 234
K AN+ V M S++ VGG S + Q+ + +EE E + G ++
Sbjct: 72 KPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEY-SEELEKL-GILIK 129
Query: 235 IARTAFYDNSSYYTLN---GKKVHF--KEVAKVLRDHGVDL----LNNRFLILQEPIAKM 285
+ Y+ L K+ +E+ K RD D L R + E K
Sbjct: 130 ARNFLVFQVKKYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKVETEAKIKQ 189
Query: 286 EVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVN 345
++ + +++R EKL + + T ++LE + + E +R+ +EI + V
Sbjct: 190 KLREIEENQKRIEKLE--EYITTSKQSLEEQKKLEGELTEEVEMAKRRIDEINKELNQV- 246
Query: 346 MKNLGEHETKVQQME-QELTANL-ESIKK 372
M+ LG+ Q+ Q+ A + ESIK+
Sbjct: 247 MEQLGDARIDRQESSRQQRKAEIMESIKR 275
>UNIPROTKB|D4A5Q2 [details] [associations]
symbol:Smc2 "Structural maintenance of chromosomes protein"
species:10116 "Rattus norvegicus" [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0000796 "condensin complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0007062 "sister chromatid
cohesion" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0010032 "meiotic chromosome
condensation" evidence=IEA] [GO:0045132 "meiotic chromosome
segregation" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0051383 "kinetochore organization"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
InterPro:IPR027120 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 RGD:1305227 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0006281 GO:GO:0006310
GO:GO:0030261 GO:GO:0007062 SUPFAM:SSF75553
GeneTree:ENSGT00550000074857 KO:K06674 PANTHER:PTHR18937:SF9
CTD:10592 OrthoDB:EOG49S65K IPI:IPI00950982 RefSeq:NP_001102136.2
Ensembl:ENSRNOT00000066226 GeneID:362519 KEGG:rno:362519
ArrayExpress:D4A5Q2 Uniprot:D4A5Q2
Length = 1191
Score = 181 (68.8 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 61/238 (25%), Positives = 114/238 (47%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ F+ G S++RA+ L L++K+ Q G +++ SV+I F
Sbjct: 27 FNAITGLNGSGKSNILDSICFLLGISNLSQVRASNLQDLVYKNGQAG-ITKASVSITFDN 85
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
DK ++ + R + Y +NG + V + G+++ N FL
Sbjct: 86 S-DKKQSPLGFEAHDEITVTRQVVIGGRNKYLINGVNANNTRVQDLFCSVGLNVNNPHFL 144
Query: 277 ILQEPIAKM------EVLYGKYDEERTEKLTRVQLV--ETDLKALEPELRKAVNFLELE- 327
I+Q I K+ E+L +E ++ + + + ++ E +L++ LE E
Sbjct: 145 IMQGRITKVLNMKPPEIL-SMIEEAAGTRMYEYKKIAAQKTIEKKEAKLKEIKTILEEEI 203
Query: 328 -NCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTEL 384
+Q+ E Y Y + EH +++ Q L A ++ ++ E++ + ++
Sbjct: 204 TPTIQKLKEERSSYLEYQKVMREIEHLSRLYIAYQFLLAE-DTKERSAGELKEMQDKI 260
>RGD|1305227 [details] [associations]
symbol:Smc2 "structural maintenance of chromosomes 2"
species:10116 "Rattus norvegicus" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0000796 "condensin complex" evidence=IEA;ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0007076
"mitotic chromosome condensation" evidence=IEA;ISO] [GO:0010032
"meiotic chromosome condensation" evidence=ISO] [GO:0045132
"meiotic chromosome segregation" evidence=ISO] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] [GO:0051383 "kinetochore
organization" evidence=ISO] InterPro:IPR024704 InterPro:IPR010935
InterPro:IPR027120 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 RGD:1305227 GO:GO:0005524
GO:GO:0005737 GO:GO:0006281 GO:GO:0006310 GO:GO:0007076
GO:GO:0000228 GO:GO:0000796 GO:GO:0007062 SUPFAM:SSF75553
PANTHER:PTHR18937:SF9 IPI:IPI00358733 PRIDE:D4AB57
Ensembl:ENSRNOT00000030563 UCSC:RGD:1305227 ArrayExpress:D4AB57
Uniprot:D4AB57
Length = 1230
Score = 181 (68.8 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 61/238 (25%), Positives = 114/238 (47%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ F+ G S++RA+ L L++K+ Q G +++ SV+I F
Sbjct: 27 FNAITGLNGSGKSNILDSICFLLGISNLSQVRASNLQDLVYKNGQAG-ITKASVSITFDN 85
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
DK ++ + R + Y +NG + V + G+++ N FL
Sbjct: 86 S-DKKQSPLGFEAHDEITVTRQVVIGGRNKYLINGVNANNTRVQDLFCSVGLNVNNPHFL 144
Query: 277 ILQEPIAKM------EVLYGKYDEERTEKLTRVQLV--ETDLKALEPELRKAVNFLELE- 327
I+Q I K+ E+L +E ++ + + + ++ E +L++ LE E
Sbjct: 145 IMQGRITKVLNMKPPEIL-SMIEEAAGTRMYEYKKIAAQKTIEKKEAKLKEIKTILEEEI 203
Query: 328 -NCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTEL 384
+Q+ E Y Y + EH +++ Q L A ++ ++ E++ + ++
Sbjct: 204 TPTIQKLKEERSSYLEYQKVMREIEHLSRLYIAYQFLLAE-DTKERSAGELKEMQDKI 260
>UNIPROTKB|F1SRP0 [details] [associations]
symbol:SMC2 "Structural maintenance of chromosomes protein"
species:9823 "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA]
[GO:0007076 "mitotic chromosome condensation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000796
"condensin complex" evidence=IEA] InterPro:IPR024704
InterPro:IPR010935 InterPro:IPR027120 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0006281
GO:GO:0006310 GO:GO:0030261 GO:GO:0007062 SUPFAM:SSF75553
GeneTree:ENSGT00550000074857 PANTHER:PTHR18937:SF9 OMA:CQNGKIP
EMBL:CU861938 Ensembl:ENSSSCT00000005946 Uniprot:F1SRP0
Length = 1191
Score = 180 (68.4 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 61/238 (25%), Positives = 114/238 (47%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ F+ G S++RA+ L L++K+ Q G +++ SV+I F
Sbjct: 27 FNAITGLNGSGKSNILDSICFLLGISNLSQVRASNLQDLVYKNGQAG-ITKASVSITFDN 85
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
DK ++ + R + Y +NG + V + G+++ N FL
Sbjct: 86 S-DKKQSPLGFEVHDEITVTRQVVIGGRNKYLINGVNANNTRVQDLFCSVGLNVNNPHFL 144
Query: 277 ILQEPIAKM------EVLYGKYDEERTEKLTRVQLV--ETDLKALEPELRKAVNFLELE- 327
I+Q I K+ E+L +E ++ + + + ++ E +L++ LE E
Sbjct: 145 IMQGRITKVLNMKPPEIL-SMIEEAAGTRMYEYKKIAAQKTIEKKEAKLKEIKTILEEEI 203
Query: 328 -NCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTEL 384
+Q+ E Y Y + EH + + Q L A ++ ++ +E++ + ++
Sbjct: 204 TPTIQKLKEERSSYLEYQKVMREIEHLSHLYIAYQFLLAE-DTKERSAEELKEMQDKI 260
>DICTYBASE|DDB_G0284499 [details] [associations]
symbol:smc2 "structural maintenance of chromosome
protein" species:44689 "Dictyostelium discoideum" [GO:0051276
"chromosome organization" evidence=IEA] [GO:0030261 "chromosome
condensation" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA;ISS] [GO:0007062 "sister chromatid
cohesion" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000796 "condensin complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0051301 "cell division" evidence=IEA]
[GO:0007067 "mitosis" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR024704
InterPro:IPR010935 InterPro:IPR027120 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
dictyBase:DDB_G0284499 Pfam:PF02463 GO:GO:0005524 GO:GO:0005634
GO:GO:0005694 GO:GO:0051301 GenomeReviews:CM000153_GR GO:GO:0006281
GO:GO:0006310 GO:GO:0007076 EMBL:AAFI02000066 GO:GO:0007062
eggNOG:COG1196 SUPFAM:SSF75553 KO:K06674 PANTHER:PTHR18937:SF9
HSSP:P32908 OMA:CQNGKIP RefSeq:XP_638528.1
ProteinModelPortal:Q54PK4 STRING:Q54PK4 PRIDE:Q54PK4
EnsemblProtists:DDB0219933 GeneID:8624621 KEGG:ddi:DDB_G0284499
ProtClustDB:CLSZ2430256 Uniprot:Q54PK4
Length = 1184
Score = 166 (63.5 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 49/140 (35%), Positives = 71/140 (50%)
Query: 150 VIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRC 208
VI+ FNAI G NGSGKSN++DS+ FV G S++R + L L++K Q G +++
Sbjct: 19 VIEGFDPTFNAITGLNGSGKSNILDSICFVLGISNLSQVRVDSLQELVYKKGQAG-ITKA 77
Query: 209 SVAIHFAQIIDKPNEE-YEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHG 267
SV I F K + YE + + + R + Y +NG V + H
Sbjct: 78 SVTITFNNSDKKQSPAGYEHLD--KITVTRQVAIGGRNKYLINGHNAQLSRVQDLF--HS 133
Query: 268 VDL-LNN-RFLILQEPIAKM 285
V L +NN FLI+Q I K+
Sbjct: 134 VQLNVNNPHFLIMQGRITKV 153
Score = 60 (26.2 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 18/96 (18%), Positives = 49/96 (51%)
Query: 296 RTEKLTRVQLVETDLKALEPELRK-AVNFLELENCVQRKHNEIYQYERYVN-MKNLGEH- 352
+ +L + + ET+L+ ++ + +K + ++ + + + + + E +N + N E
Sbjct: 278 KISELAKQREKETNLEEMDQQEQKLSKELVKYQTSHKHQKESLDKEEGAINNLANTREEI 337
Query: 353 ETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
+ +QQ ++E + + I+ +E + ELKT++
Sbjct: 338 KQSIQQKQKEKQSMEKKIQSIVEENQQINAELKTLQ 373
Score = 43 (20.2 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 8/36 (22%), Positives = 21/36 (58%)
Query: 284 KMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRK 319
K+ ++ K ++E E + + +++E D +E +R+
Sbjct: 986 KVMSMFEKAEQEYQELMEKKKIIENDKSKIEHVIRE 1021
Score = 43 (20.2 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 20/129 (15%), Positives = 58/129 (44%)
Query: 263 LRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLT-RVQLVETDLKALEPELRKAV 321
+R+ + L + I +E K + K ++ EKL +Q ++ +L+ L E +
Sbjct: 786 IRESQLKDLEKKIQITKEKCIKSNKIV-KGEQVFIEKLDLEIQEMDNELENLSKETQG-- 842
Query: 322 NFLELENCVQRKHNEIYQYERYVNMKN--LGEHETKVQQMEQELTANLESIKKCTDEMES 379
N + + + ++ R ++ N + + + ++ +++ ++I+ E+E
Sbjct: 843 N----QGTISKMRKDVDTLARSISETNKQIQDIRETLSEIRKDMAQKNDAIRSLHQELEK 898
Query: 380 AKTELKTVE 388
++E+ ++
Sbjct: 899 IQSEITEID 907
>UNIPROTKB|O93308 [details] [associations]
symbol:smc1a "Structural maintenance of chromosomes protein
1A" species:8355 "Xenopus laevis" [GO:0000075 "cell cycle
checkpoint" evidence=ISS] [GO:0000776 "kinetochore" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0007126 "meiosis" evidence=ISS] [GO:0009314
"response to radiation" evidence=ISS] [GO:0030893 "meiotic cohesin
complex" evidence=ISS] [GO:0042770 "signal transduction in response
to DNA damage" evidence=ISS] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0007126
GO:GO:0000776 GO:GO:0051301 GO:GO:0007067 GO:GO:0006281
GO:GO:0003682 GO:GO:0042770 GO:GO:0006310 GO:GO:0030261
GO:GO:0009314 GO:GO:0000075 GO:GO:0007062 SUPFAM:SSF75553
GO:GO:0030893 HOVERGEN:HBG039593 EMBL:AF051784
RefSeq:NP_001165905.1 UniGene:Xl.4734 ProteinModelPortal:O93308
IntAct:O93308 GeneID:100379087 KEGG:xla:100379087 CTD:100379087
Uniprot:O93308
Length = 1232
Score = 177 (67.4 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 72/267 (26%), Positives = 123/267 (46%)
Query: 145 SGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVG- 203
S K I RF AIIGPNGSGKSN++D++ FV G + S +R L L+H + VG
Sbjct: 14 SYKGRQIIGPFHRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAP-VGK 72
Query: 204 -GVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKV 262
+R V++ +++ D E+ + SS Y +N K V E +
Sbjct: 73 PAANRAFVSMVYSE--DSGEEK----------VFSRVIVGGSSEYKINNKVVQLSEYSDS 120
Query: 263 LRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEERT---EKLTRVQLVETDLKALEPELRK 319
L G+ + FL+ Q + + + K +ERT E+++R + + + E+ K
Sbjct: 121 LEKLGILIKARNFLVFQGAVESIAM---KNPKERTALFEEISRSGELAQEYDKRKKEMVK 177
Query: 320 A-----VNFLELEN-CVQRKH--NEIYQYERYVNMKN-------------LGEHETKVQQ 358
A N+ +N +RK E + ERY +K+ L +E+++++
Sbjct: 178 AEEDTQFNYHRKKNIAAERKEAKQEKEEAERYQRLKDEVARAQIQLQLFKLYHNESEIEK 237
Query: 359 MEQELTANLESIKKCTDEMESAKTELK 385
+ +EL+ + I+K M+ + ELK
Sbjct: 238 LNKELSVKNKGIEKDKKHMDKVEEELK 264
>UNIPROTKB|G3X7C0 [details] [associations]
symbol:SMC1A "Structural maintenance of chromosomes
protein" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0042770 "signal transduction in response to DNA
damage" evidence=IEA] [GO:0036033 "mediator complex binding"
evidence=IEA] [GO:0032876 "negative regulation of DNA
endoreduplication" evidence=IEA] [GO:0030893 "meiotic cohesin
complex" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0009314 "response to radiation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA] [GO:0000075
"cell cycle checkpoint" evidence=IEA] [GO:0030261 "chromosome
condensation" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0000776 GO:GO:0006281 GO:GO:0003682 GO:GO:0042770
GO:GO:0006310 GO:GO:0030261 GO:GO:0009314 GO:GO:0032876
GO:GO:0000075 GO:GO:0007062 SUPFAM:SSF75553 GO:GO:0030893
OMA:NALVCET GeneTree:ENSGT00580000081569 EMBL:DAAA02073280
EMBL:DAAA02073281 Ensembl:ENSBTAT00000023619 Uniprot:G3X7C0
Length = 1232
Score = 175 (66.7 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 67/252 (26%), Positives = 118/252 (46%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVG--GVSRCSVAIHF 214
RF AIIGPNGSGKSN++D++ FV G + S +R L L+H + VG +R V++ +
Sbjct: 26 RFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAP-VGKPAANRAFVSMVY 84
Query: 215 AQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNR 274
++ E E D AR SS Y +N K V E ++ L G+ +
Sbjct: 85 SE------EGAE-----DRTFARV-IVGGSSEYKINNKVVQLHEYSEELEKLGILIKARN 132
Query: 275 FLILQ------------------EPIAKMEVLYGKYDEERTEKLTRVQLVETDL---KAL 313
FL+ Q E I++ L +YD+ + E + + + + K +
Sbjct: 133 FLVFQGAVESIAMKNPKERTALFEEISRSGELAQEYDKRKKEMVKAEEDTQFNYHRKKNI 192
Query: 314 EPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKC 373
E ++A E + QR +E+ + + + + L +E +++++ +EL + + I+K
Sbjct: 193 AAERKEAKQEKEEADRYQRLKDEVVRAQVQLQLFKLYHNEVEIEKLNKELASKNKEIEKD 252
Query: 374 TDEMESAKTELK 385
M+ + ELK
Sbjct: 253 KKRMDKVEDELK 264
Score = 109 (43.4 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 37/102 (36%), Positives = 54/102 (52%)
Query: 126 EIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRAS 185
+IIG ++RF AIIGPNGSGKSN++D++ F ++G S V + G
Sbjct: 19 QIIGP--FQRFTAIIGPNGSGKSNLMDAISF----VLGEKTSNL-RVKTLRDLIHGAPVG 71
Query: 186 KIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEI 227
K AN+ V M S++ G R FA++I + EY+I
Sbjct: 72 KPAANRAFVSMVYSEE-GAEDRT-----FARVIVGGSSEYKI 107
Score = 75 (31.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 288 LYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLE-LENCVQRKHNEIYQYE-RYVN 345
L K E +K R+ VE +LK + EL K + + +E ++ K +E+ Q +Y+
Sbjct: 242 LASKNKEIEKDK-KRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYIK 300
Query: 346 MKNLGEHETKVQQMEQELTANLES-IKKCTDEMESAKTELKTVE 388
K H+ K + ++ N + KK +M+ + E+ +VE
Sbjct: 301 AKENTSHKIKKLEAAKKSLQNAQKHYKKRKGDMDELEKEMLSVE 344
Score = 61 (26.5 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 27/93 (29%), Positives = 46/93 (49%)
Query: 295 ERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHET 354
+ EK R Q + D L+ E RK V E E +++K EI + ++ + + L E+ T
Sbjct: 391 QELEKFNRDQKADQD--RLDLEERKKV---ETEAKIKQKLREIEENQKRI--EKLEEYIT 443
Query: 355 KVQQMEQELTANLESIKKCTDEMESAKTELKTV 387
+Q +E LE + T+E+E AK + +
Sbjct: 444 TSKQSLEE-QKKLEG--ELTEEVEMAKRRIDEI 473
>UNIPROTKB|O97593 [details] [associations]
symbol:SMC1A "Structural maintenance of chromosomes protein
1A" species:9913 "Bos taurus" [GO:0030893 "meiotic cohesin complex"
evidence=ISS] [GO:0007126 "meiosis" evidence=ISS] [GO:0009314
"response to radiation" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0000776 "kinetochore" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0000075 "cell cycle
checkpoint" evidence=ISS] [GO:0042770 "signal transduction in
response to DNA damage" evidence=ISS] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0036033 "mediator
complex binding" evidence=IEA] [GO:0032876 "negative regulation of
DNA endoreduplication" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0051301
"cell division" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR024704
InterPro:IPR010935 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005634
GO:GO:0007126 GO:GO:0005737 GO:GO:0000776 GO:GO:0051301
GO:GO:0007067 GO:GO:0006281 GO:GO:0003682 GO:GO:0042770
GO:GO:0006310 GO:GO:0030261 GO:GO:0009314 GO:GO:0032876
GO:GO:0000075 GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553
GO:GO:0030893 EMBL:AF072712 IPI:IPI00687474 PIR:S71602
RefSeq:NP_777039.1 UniGene:Bt.109789 ProteinModelPortal:O97593
STRING:O97593 PRIDE:O97593 GeneID:282370 KEGG:bta:282370 CTD:8243
HOGENOM:HOG000195481 HOVERGEN:HBG039593 InParanoid:O97593 KO:K06636
OrthoDB:EOG4HX507 NextBio:20806162 Uniprot:O97593
Length = 1233
Score = 175 (66.7 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 67/252 (26%), Positives = 118/252 (46%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVG--GVSRCSVAIHF 214
RF AIIGPNGSGKSN++D++ FV G + S +R L L+H + VG +R V++ +
Sbjct: 26 RFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAP-VGKPAANRAFVSMVY 84
Query: 215 AQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNR 274
++ E E D AR SS Y +N K V E ++ L G+ +
Sbjct: 85 SE------EGAE-----DRTFARV-IVGGSSEYKINNKVVQLHEYSEELEKLGILIKARN 132
Query: 275 FLILQ------------------EPIAKMEVLYGKYDEERTEKLTRVQLVETDL---KAL 313
FL+ Q E I++ L +YD+ + E + + + + K +
Sbjct: 133 FLVFQGAVESIAMKNPKERTALFEEISRSGELAQEYDKRKKEMVKAEEDTQFNYHRKKNI 192
Query: 314 EPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKC 373
E ++A E + QR +E+ + + + + L +E +++++ +EL + + I+K
Sbjct: 193 AAERKEAKQEKEEADRYQRLKDEVVRAQVQLQLFKLYHNEVEIEKLNKELASKNKEIEKD 252
Query: 374 TDEMESAKTELK 385
M+ + ELK
Sbjct: 253 KKRMDKVEDELK 264
Score = 109 (43.4 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 37/102 (36%), Positives = 54/102 (52%)
Query: 126 EIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRAS 185
+IIG ++RF AIIGPNGSGKSN++D++ F ++G S V + G
Sbjct: 19 QIIGP--FQRFTAIIGPNGSGKSNLMDAISF----VLGEKTSNL-RVKTLRDLIHGAPVG 71
Query: 186 KIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEI 227
K AN+ V M S++ G R FA++I + EY+I
Sbjct: 72 KPAANRAFVSMVYSEE-GAEDRT-----FARVIVGGSSEYKI 107
Score = 75 (31.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 288 LYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLE-LENCVQRKHNEIYQYE-RYVN 345
L K E +K R+ VE +LK + EL K + + +E ++ K +E+ Q +Y+
Sbjct: 242 LASKNKEIEKDK-KRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYIK 300
Query: 346 MKNLGEHETKVQQMEQELTANLES-IKKCTDEMESAKTELKTVE 388
K H+ K + ++ N + KK +M+ + E+ +VE
Sbjct: 301 AKENTSHKIKKLEAAKKSLQNAQKHYKKRKGDMDELEKEMLSVE 344
Score = 61 (26.5 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 27/93 (29%), Positives = 46/93 (49%)
Query: 295 ERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHET 354
+ EK R Q + D L+ E RK V E E +++K EI + ++ + + L E+ T
Sbjct: 391 QELEKFNRDQKADQD--RLDLEERKKV---ETEAKIKQKLREIEENQKRI--EKLEEYIT 443
Query: 355 KVQQMEQELTANLESIKKCTDEMESAKTELKTV 387
+Q +E LE + T+E+E AK + +
Sbjct: 444 TSKQSLEE-QKKLEG--ELTEEVEMAKRRIDEI 473
>UNIPROTKB|E2QV07 [details] [associations]
symbol:SMC1A "Structural maintenance of chromosomes
protein" species:9615 "Canis lupus familiaris" [GO:0005634
"nucleus" evidence=IEA] [GO:0030261 "chromosome condensation"
evidence=IEA] [GO:0007062 "sister chromatid cohesion" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR024704
InterPro:IPR010935 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005634
GO:GO:0005694 GO:GO:0006281 GO:GO:0006310 GO:GO:0030261
GO:GO:0007062 SUPFAM:SSF75553 CTD:8243 KO:K06636 OMA:NALVCET
GeneTree:ENSGT00580000081569 EMBL:AAEX03026385 RefSeq:XP_538049.3
Ensembl:ENSCAFT00000025795 GeneID:480928 KEGG:cfa:480928
Uniprot:E2QV07
Length = 1233
Score = 175 (66.7 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 67/252 (26%), Positives = 118/252 (46%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVG--GVSRCSVAIHF 214
RF AIIGPNGSGKSN++D++ FV G + S +R L L+H + VG +R V++ +
Sbjct: 26 RFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAP-VGKPAANRAFVSMVY 84
Query: 215 AQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNR 274
++ E E D AR SS Y +N K V E ++ L G+ +
Sbjct: 85 SE------EGAE-----DRTFARV-IVGGSSEYKINNKVVQLHEYSEELEKLGILIKARN 132
Query: 275 FLILQ------------------EPIAKMEVLYGKYDEERTEKLTRVQLVETDL---KAL 313
FL+ Q E I++ L +YD+ + E + + + + K +
Sbjct: 133 FLVFQGAVESIAMKNPKERTALFEEISRSGELAQEYDKRKKEMVKAEEDTQFNYHRKKNI 192
Query: 314 EPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKC 373
E ++A E + QR +E+ + + + + L +E +++++ +EL + + I+K
Sbjct: 193 AAERKEAKQEKEEADRYQRLKDEVVRAQVQLQLFKLYHNEVEIEKLNKELASKNKEIEKD 252
Query: 374 TDEMESAKTELK 385
M+ + ELK
Sbjct: 253 KKRMDKVEDELK 264
Score = 109 (43.4 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 37/102 (36%), Positives = 54/102 (52%)
Query: 126 EIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRAS 185
+IIG ++RF AIIGPNGSGKSN++D++ F ++G S V + G
Sbjct: 19 QIIGP--FQRFTAIIGPNGSGKSNLMDAISF----VLGEKTSNL-RVKTLRDLIHGAPVG 71
Query: 186 KIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEI 227
K AN+ V M S++ G R FA++I + EY+I
Sbjct: 72 KPAANRAFVSMVYSEE-GAEDRT-----FARVIVGGSSEYKI 107
Score = 75 (31.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 288 LYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLE-LENCVQRKHNEIYQYE-RYVN 345
L K E +K R+ VE +LK + EL K + + +E ++ K +E+ Q +Y+
Sbjct: 242 LASKNKEIEKDK-KRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYIK 300
Query: 346 MKNLGEHETKVQQMEQELTANLES-IKKCTDEMESAKTELKTVE 388
K H+ K + ++ N + KK +M+ + E+ +VE
Sbjct: 301 AKENTSHKIKKLEAAKKSLQNAQKHYKKRKGDMDELEKEMLSVE 344
Score = 61 (26.5 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 27/93 (29%), Positives = 46/93 (49%)
Query: 295 ERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHET 354
+ EK R Q + D L+ E RK V E E +++K EI + ++ + + L E+ T
Sbjct: 391 QELEKFNRDQKADQD--RLDLEERKKV---ETEAKIKQKLREIEENQKRI--EKLEEYIT 443
Query: 355 KVQQMEQELTANLESIKKCTDEMESAKTELKTV 387
+Q +E LE + T+E+E AK + +
Sbjct: 444 TSKQSLEE-QKKLEG--ELTEEVEMAKRRIDEI 473
>UNIPROTKB|Q14683 [details] [associations]
symbol:SMC1A "Structural maintenance of chromosomes protein
1A" species:9606 "Homo sapiens" [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0036033 "mediator complex binding" evidence=IEA] [GO:0000777
"condensed chromosome kinetochore" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IPI] [GO:0042770
"signal transduction in response to DNA damage" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0000075 "cell cycle
checkpoint" evidence=IDA] [GO:0009314 "response to radiation"
evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008280 "cohesin core heterodimer" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0007052 "mitotic spindle organization"
evidence=TAS] [GO:0003777 "microtubule motor activity"
evidence=NAS] [GO:0007064 "mitotic sister chromatid cohesion"
evidence=TAS] [GO:0000776 "kinetochore" evidence=IDA] [GO:0007126
"meiosis" evidence=ISS] [GO:0000070 "mitotic sister chromatid
segregation" evidence=TAS] [GO:0030893 "meiotic cohesin complex"
evidence=IDA] [GO:0000794 "condensed nuclear chromosome"
evidence=TAS] [GO:0000087 "M phase of mitotic cell cycle"
evidence=TAS] [GO:0000236 "mitotic prometaphase" evidence=TAS]
[GO:0000278 "mitotic cell cycle" evidence=TAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0007091 "metaphase/anaphase transition of mitotic
cell cycle" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0032876 "negative
regulation of DNA endoreduplication" evidence=IMP] [GO:0007062
"sister chromatid cohesion" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
Reactome:REACT_71 InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0007126 GO:GO:0005737
Reactome:REACT_115566 GO:GO:0005654 Reactome:REACT_21300
GO:GO:0000776 GO:GO:0051301 GO:GO:0007052 GO:GO:0006281
Reactome:REACT_1675 GO:GO:0003682 GO:GO:0042770
Reactome:REACT_111183 GO:GO:0006310 GO:GO:0000794 GO:GO:0030261
GO:GO:0009314 GO:GO:0003777 GO:GO:0032876 GO:GO:0007091
GO:GO:0000398 GO:GO:0000075 GO:GO:0000236 GO:GO:0000777
GO:GO:0007064 eggNOG:COG1196 SUPFAM:SSF75553 EMBL:Z97054
Orphanet:199 EMBL:AL161779 GO:GO:0030893 GO:GO:0008280 CTD:8243
HOGENOM:HOG000195481 HOVERGEN:HBG039593 KO:K06636 OrthoDB:EOG4HX507
EMBL:S78271 EMBL:D80000 EMBL:BC112127 IPI:IPI00291939 PIR:I54383
RefSeq:NP_006297.2 UniGene:Hs.211602 ProteinModelPortal:Q14683
SMR:Q14683 DIP:DIP-30911N IntAct:Q14683 MINT:MINT-233274
STRING:Q14683 PhosphoSite:Q14683 DMDM:29336622 PaxDb:Q14683
PeptideAtlas:Q14683 PRIDE:Q14683 Ensembl:ENST00000322213
GeneID:8243 KEGG:hsa:8243 UCSC:uc004dsg.3 GeneCards:GC0XM053417
HGNC:HGNC:11111 HPA:CAB025404 HPA:HPA005499 MIM:300040 MIM:300590
neXtProt:NX_Q14683 PharmGKB:PA35961 InParanoid:Q14683 OMA:NALVCET
PhylomeDB:Q14683 ChiTaRS:SMC1A GenomeRNAi:8243 NextBio:31006
ArrayExpress:Q14683 Bgee:Q14683 CleanEx:HS_SMC1A
Genevestigator:Q14683 GermOnline:ENSG00000072501 Uniprot:Q14683
Length = 1233
Score = 175 (66.7 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 67/252 (26%), Positives = 118/252 (46%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVG--GVSRCSVAIHF 214
RF AIIGPNGSGKSN++D++ FV G + S +R L L+H + VG +R V++ +
Sbjct: 26 RFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAP-VGKPAANRAFVSMVY 84
Query: 215 AQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNR 274
++ E E D AR SS Y +N K V E ++ L G+ +
Sbjct: 85 SE------EGAE-----DRTFARV-IVGGSSEYKINNKVVQLHEYSEELEKLGILIKARN 132
Query: 275 FLILQ------------------EPIAKMEVLYGKYDEERTEKLTRVQLVETDL---KAL 313
FL+ Q E I++ L +YD+ + E + + + + K +
Sbjct: 133 FLVFQGAVESIAMKNPKERTALFEEISRSGELAQEYDKRKKEMVKAEEDTQFNYHRKKNI 192
Query: 314 EPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKC 373
E ++A E + QR +E+ + + + + L +E +++++ +EL + + I+K
Sbjct: 193 AAERKEAKQEKEEADRYQRLKDEVVRAQVQLQLFKLYHNEVEIEKLNKELASKNKEIEKD 252
Query: 374 TDEMESAKTELK 385
M+ + ELK
Sbjct: 253 KKRMDKVEDELK 264
Score = 109 (43.4 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 37/102 (36%), Positives = 54/102 (52%)
Query: 126 EIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRAS 185
+IIG ++RF AIIGPNGSGKSN++D++ F ++G S V + G
Sbjct: 19 QIIGP--FQRFTAIIGPNGSGKSNLMDAISF----VLGEKTSNL-RVKTLRDLIHGAPVG 71
Query: 186 KIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEI 227
K AN+ V M S++ G R FA++I + EY+I
Sbjct: 72 KPAANRAFVSMVYSEE-GAEDRT-----FARVIVGGSSEYKI 107
Score = 75 (31.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 288 LYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLE-LENCVQRKHNEIYQYE-RYVN 345
L K E +K R+ VE +LK + EL K + + +E ++ K +E+ Q +Y+
Sbjct: 242 LASKNKEIEKDK-KRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYIK 300
Query: 346 MKNLGEHETKVQQMEQELTANLES-IKKCTDEMESAKTELKTVE 388
K H+ K + ++ N + KK +M+ + E+ +VE
Sbjct: 301 AKENTSHKIKKLEAAKKSLQNAQKHYKKRKGDMDELEKEMLSVE 344
Score = 61 (26.5 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 27/93 (29%), Positives = 46/93 (49%)
Query: 295 ERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHET 354
+ EK R Q + D L+ E RK V E E +++K EI + ++ + + L E+ T
Sbjct: 391 QELEKFNRDQKADQD--RLDLEERKKV---ETEAKIKQKLREIEENQKRI--EKLEEYIT 443
Query: 355 KVQQMEQELTANLESIKKCTDEMESAKTELKTV 387
+Q +E LE + T+E+E AK + +
Sbjct: 444 TSKQSLEE-QKKLEG--ELTEEVEMAKRRIDEI 473
>UNIPROTKB|F2Z5A8 [details] [associations]
symbol:LOC100523938 "Structural maintenance of chromosomes
protein" species:9823 "Sus scrofa" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
SUPFAM:SSF75553 KO:K06636 GeneTree:ENSGT00580000081569
EMBL:CU695116 EMBL:CU914655 EMBL:GACC01000120 RefSeq:XP_003135172.3
Ensembl:ENSSSCT00000013478 GeneID:100523938 KEGG:ssc:100523938
Uniprot:F2Z5A8
Length = 1233
Score = 175 (66.7 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 67/252 (26%), Positives = 118/252 (46%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVG--GVSRCSVAIHF 214
RF AIIGPNGSGKSN++D++ FV G + S +R L L+H + VG +R V++ +
Sbjct: 26 RFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAP-VGKPAANRAFVSMVY 84
Query: 215 AQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNR 274
++ E E D AR SS Y +N K V E ++ L G+ +
Sbjct: 85 SE------EGAE-----DRTFARV-IVGGSSEYKINNKVVQLHEYSEELEKLGILIKARN 132
Query: 275 FLILQ------------------EPIAKMEVLYGKYDEERTEKLTRVQLVETDL---KAL 313
FL+ Q E I++ L +YD+ + E + + + + K +
Sbjct: 133 FLVFQGAVESIAMKNPKERTALFEEISRSGELAQEYDKRKKEMVKAEEDTQFNYHRKKNI 192
Query: 314 EPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKC 373
E ++A E + QR +E+ + + + + L +E +++++ +EL + + I+K
Sbjct: 193 AAERKEAKQEKEEADRYQRLKDEVVRAQVQLQLFKLYHNEVEIEKLNKELASKNKEIEKD 252
Query: 374 TDEMESAKTELK 385
M+ + ELK
Sbjct: 253 KKRMDKVEDELK 264
Score = 109 (43.4 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 37/102 (36%), Positives = 54/102 (52%)
Query: 126 EIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRAS 185
+IIG ++RF AIIGPNGSGKSN++D++ F ++G S V + G
Sbjct: 19 QIIGP--FQRFTAIIGPNGSGKSNLMDAISF----VLGEKTSNL-RVKTLRDLIHGAPVG 71
Query: 186 KIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEI 227
K AN+ V M S++ G R FA++I + EY+I
Sbjct: 72 KPAANRAFVSMVYSEE-GAEDRT-----FARVIVGGSSEYKI 107
Score = 75 (31.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 288 LYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLE-LENCVQRKHNEIYQYE-RYVN 345
L K E +K R+ VE +LK + EL K + + +E ++ K +E+ Q +Y+
Sbjct: 242 LASKNKEIEKDK-KRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYIK 300
Query: 346 MKNLGEHETKVQQMEQELTANLES-IKKCTDEMESAKTELKTVE 388
K H+ K + ++ N + KK +M+ + E+ +VE
Sbjct: 301 AKENTSHKIKKLEAAKKSLQNAQKHYKKRKGDMDELEKEMLSVE 344
Score = 61 (26.5 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 27/93 (29%), Positives = 46/93 (49%)
Query: 295 ERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHET 354
+ EK R Q + D L+ E RK V E E +++K EI + ++ + + L E+ T
Sbjct: 391 QELEKFNRDQKADQD--RLDLEERKKV---ETEAKIKQKLREIEENQKRI--EKLEEYIT 443
Query: 355 KVQQMEQELTANLESIKKCTDEMESAKTELKTV 387
+Q +E LE + T+E+E AK + +
Sbjct: 444 TSKQSLEE-QKKLEG--ELTEEVEMAKRRIDEI 473
>MGI|MGI:1344345 [details] [associations]
symbol:Smc1a "structural maintenance of chromosomes 1A"
species:10090 "Mus musculus" [GO:0000075 "cell cycle checkpoint"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0000776 "kinetochore" evidence=ISO] [GO:0003682 "chromatin
binding" evidence=ISO;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0007062 "sister chromatid cohesion" evidence=ISO]
[GO:0007067 "mitosis" evidence=IEA] [GO:0007126 "meiosis"
evidence=ISO;IPI] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0030261 "chromosome condensation" evidence=IEA] [GO:0030893
"meiotic cohesin complex" evidence=ISO;IDA] [GO:0032876 "negative
regulation of DNA endoreduplication" evidence=ISO] [GO:0036033
"mediator complex binding" evidence=IDA] [GO:0042770 "signal
transduction in response to DNA damage" evidence=ISO] [GO:0046982
"protein heterodimerization activity" evidence=ISO] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
MGI:MGI:1344345 GO:GO:0005524 GO:GO:0007126 GO:GO:0005737
GO:GO:0005654 GO:GO:0000776 GO:GO:0051301 GO:GO:0007067
GO:GO:0006281 GO:GO:0003682 GO:GO:0042770 Reactome:REACT_118161
Reactome:REACT_120463 Reactome:REACT_75800 GO:GO:0006310
GO:GO:0030261 GO:GO:0009314 GO:GO:0032876 GO:GO:0019827
GO:GO:0000075 GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553
EMBL:AL672180 GO:GO:0036033 GO:GO:0030893 CTD:8243
HOGENOM:HOG000195481 HOVERGEN:HBG039593 KO:K06636 OrthoDB:EOG4HX507
EMBL:AF047600 EMBL:BC131667 EMBL:AK007334 EMBL:AK013648
EMBL:AK017948 EMBL:AK088183 IPI:IPI00123870 RefSeq:NP_062684.2
UniGene:Mm.482095 PDB:2WD5 PDBsum:2WD5 ProteinModelPortal:Q9CU62
SMR:Q9CU62 DIP:DIP-57021N IntAct:Q9CU62 STRING:Q9CU62
PhosphoSite:Q9CU62 PaxDb:Q9CU62 PRIDE:Q9CU62
Ensembl:ENSMUST00000045312 GeneID:24061 KEGG:mmu:24061
GeneTree:ENSGT00580000081569 InParanoid:A2AFQ5
EvolutionaryTrace:Q9CU62 NextBio:304025 Bgee:Q9CU62
CleanEx:MM_SMC1A Genevestigator:Q9CU62
GermOnline:ENSMUSG00000041133 Uniprot:Q9CU62
Length = 1233
Score = 175 (66.7 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 67/252 (26%), Positives = 118/252 (46%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVG--GVSRCSVAIHF 214
RF AIIGPNGSGKSN++D++ FV G + S +R L L+H + VG +R V++ +
Sbjct: 26 RFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAP-VGKPAANRAFVSMVY 84
Query: 215 AQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNR 274
++ E E D AR SS Y +N K V E ++ L G+ +
Sbjct: 85 SE------EGAE-----DRTFARV-IVGGSSEYKINNKVVQLHEYSEELEKLGILIKARN 132
Query: 275 FLILQ------------------EPIAKMEVLYGKYDEERTEKLTRVQLVETDL---KAL 313
FL+ Q E I++ L +YD+ + E + + + + K +
Sbjct: 133 FLVFQGAVESIAMKNPKERTALFEEISRSGELAQEYDKRKKEMVKAEEDTQFNYHRKKNI 192
Query: 314 EPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKC 373
E ++A E + QR +E+ + + + + L +E +++++ +EL + + I+K
Sbjct: 193 AAERKEAKQEKEEADRYQRLKDEVVRAQVQLQLFKLYHNEVEIEKLNKELASKNKEIEKD 252
Query: 374 TDEMESAKTELK 385
M+ + ELK
Sbjct: 253 KKRMDKVEDELK 264
Score = 109 (43.4 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 37/102 (36%), Positives = 54/102 (52%)
Query: 126 EIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRAS 185
+IIG ++RF AIIGPNGSGKSN++D++ F ++G S V + G
Sbjct: 19 QIIGP--FQRFTAIIGPNGSGKSNLMDAISF----VLGEKTSNL-RVKTLRDLIHGAPVG 71
Query: 186 KIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEI 227
K AN+ V M S++ G R FA++I + EY+I
Sbjct: 72 KPAANRAFVSMVYSEE-GAEDRT-----FARVIVGGSSEYKI 107
Score = 75 (31.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 288 LYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLE-LENCVQRKHNEIYQYE-RYVN 345
L K E +K R+ VE +LK + EL K + + +E ++ K +E+ Q +Y+
Sbjct: 242 LASKNKEIEKDK-KRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYIK 300
Query: 346 MKNLGEHETKVQQMEQELTANLES-IKKCTDEMESAKTELKTVE 388
K H+ K + ++ N + KK +M+ + E+ +VE
Sbjct: 301 AKENTSHKIKKLEAAKKSLQNAQKHYKKRKGDMDELEKEMLSVE 344
Score = 61 (26.5 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 27/93 (29%), Positives = 46/93 (49%)
Query: 295 ERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHET 354
+ EK R Q + D L+ E RK V E E +++K EI + ++ + + L E+ T
Sbjct: 391 QELEKFNRDQKADQD--RLDLEERKKV---ETEAKIKQKLREIEENQKRI--EKLEEYIT 443
Query: 355 KVQQMEQELTANLESIKKCTDEMESAKTELKTV 387
+Q +E LE + T+E+E AK + +
Sbjct: 444 TSKQSLEE-QKKLEG--ELTEEVEMAKRRIDEI 473
>UNIPROTKB|I3LMC6 [details] [associations]
symbol:LOC100523938 "Structural maintenance of chromosomes
protein" species:9823 "Sus scrofa" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
SUPFAM:SSF75553 OMA:NALVCET GeneTree:ENSGT00580000081569
EMBL:CU695116 EMBL:CU914655 Ensembl:ENSSSCT00000028659
Uniprot:I3LMC6
Length = 1235
Score = 175 (66.7 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 67/252 (26%), Positives = 118/252 (46%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVG--GVSRCSVAIHF 214
RF AIIGPNGSGKSN++D++ FV G + S +R L L+H + VG +R V++ +
Sbjct: 26 RFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAP-VGKPAANRAFVSMVY 84
Query: 215 AQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNR 274
++ E E D AR SS Y +N K V E ++ L G+ +
Sbjct: 85 SE------EGAE-----DRTFARV-IVGGSSEYKINNKVVQLHEYSEELEKLGILIKARN 132
Query: 275 FLILQ------------------EPIAKMEVLYGKYDEERTEKLTRVQLVETDL---KAL 313
FL+ Q E I++ L +YD+ + E + + + + K +
Sbjct: 133 FLVFQGAVESIAMKNPKERTALFEEISRSGELAQEYDKRKKEMVKAEEDTQFNYHRKKNI 192
Query: 314 EPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKC 373
E ++A E + QR +E+ + + + + L +E +++++ +EL + + I+K
Sbjct: 193 AAERKEAKQEKEEADRYQRLKDEVVRAQVQLQLFKLYHNEVEIEKLNKELASKNKEIEKD 252
Query: 374 TDEMESAKTELK 385
M+ + ELK
Sbjct: 253 KKRMDKVEDELK 264
Score = 109 (43.4 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 37/102 (36%), Positives = 54/102 (52%)
Query: 126 EIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRAS 185
+IIG ++RF AIIGPNGSGKSN++D++ F ++G S V + G
Sbjct: 19 QIIGP--FQRFTAIIGPNGSGKSNLMDAISF----VLGEKTSNL-RVKTLRDLIHGAPVG 71
Query: 186 KIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEI 227
K AN+ V M S++ G R FA++I + EY+I
Sbjct: 72 KPAANRAFVSMVYSEE-GAEDRT-----FARVIVGGSSEYKI 107
Score = 75 (31.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 288 LYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLE-LENCVQRKHNEIYQYE-RYVN 345
L K E +K R+ VE +LK + EL K + + +E ++ K +E+ Q +Y+
Sbjct: 242 LASKNKEIEKDK-KRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYIK 300
Query: 346 MKNLGEHETKVQQMEQELTANLES-IKKCTDEMESAKTELKTVE 388
K H+ K + ++ N + KK +M+ + E+ +VE
Sbjct: 301 AKENTSHKIKKLEAAKKSLQNAQKHYKKRKGDMDELEKEMLSVE 344
Score = 61 (26.5 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 27/93 (29%), Positives = 46/93 (49%)
Query: 295 ERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHET 354
+ EK R Q + D L+ E RK V E E +++K EI + ++ + + L E+ T
Sbjct: 391 QELEKFNRDQKADQD--RLDLEERKKV---ETEAKIKQKLREIEENQKRI--EKLEEYIT 443
Query: 355 KVQQMEQELTANLESIKKCTDEMESAKTELKTV 387
+Q +E LE + T+E+E AK + +
Sbjct: 444 TSKQSLEE-QKKLEG--ELTEEVEMAKRRIDEI 473
>UNIPROTKB|F1MY41 [details] [associations]
symbol:SMC2 "Structural maintenance of chromosomes protein"
species:9913 "Bos taurus" [GO:0000796 "condensin complex"
evidence=ISS] [GO:0046982 "protein heterodimerization activity"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0000228
"nuclear chromosome" evidence=ISS] [GO:0051383 "kinetochore
organization" evidence=IEA] [GO:0045132 "meiotic chromosome
segregation" evidence=IEA] [GO:0010032 "meiotic chromosome
condensation" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
InterPro:IPR027120 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005737
GO:GO:0006281 GO:GO:0006310 GO:GO:0046982 GO:GO:0007076
GO:GO:0000228 GO:GO:0000796 GO:GO:0007062 SUPFAM:SSF75553
GeneTree:ENSGT00550000074857 PANTHER:PTHR18937:SF9 OMA:CQNGKIP
EMBL:DAAA02024368 IPI:IPI01001793 Ensembl:ENSBTAT00000011562
NextBio:20877854 Uniprot:F1MY41
Length = 1191
Score = 182 (69.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 65/244 (26%), Positives = 116/244 (47%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ F+ G S++RA+ L L++K+ Q G +++ V+I F
Sbjct: 27 FNAITGLNGSGKSNILDSICFLLGISNLSQVRASNLQDLVYKNGQAG-ITKALVSITFDN 85
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
DK ++ + R + Y +NG + V + G+++ N FL
Sbjct: 86 S-DKKQSPLGFEVHDEITVTRQVVIGGRNKYLINGVNANNTRVYDLFCSVGLNVNNPHFL 144
Query: 277 ILQEPIAKM------EVLYGKYDEERTEKLT--RVQLVETDLKALEPELRKAVNFLELE- 327
I+Q I K+ E+L +E ++ + Q + ++ E +LR+ LE E
Sbjct: 145 IMQGRITKVMNMKPPEIL-SMIEEAAGTRMYEYKKQNAQRTIEKKEAKLREIKTILEEEI 203
Query: 328 -NCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTA------NLESIKKCTDEMESA 380
+Q+ E Y Y + EH +++ Q L A + E++K+ D+++
Sbjct: 204 TPTIQKLKEERSSYLEYQKLLREIEHLSRLYIAYQFLLAEDTKERSAEALKEMQDKIKKL 263
Query: 381 KTEL 384
+ E+
Sbjct: 264 QEEV 267
Score = 37 (18.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 368 ESIKKCTDEMESAKTELKTVE 388
+ +K DE+ + + EL+ +E
Sbjct: 679 QELKDVQDELRTKENELRALE 699
>POMBASE|SPBP4H10.06c [details] [associations]
symbol:cut14 "condensin complex subunit Cut14"
species:4896 "Schizosaccharomyces pombe" [GO:0000796 "condensin
complex" evidence=IDA] [GO:0000939 "condensed chromosome inner
kinetochore" evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0007062 "sister chromatid cohesion" evidence=IEA]
[GO:0007076 "mitotic chromosome condensation" evidence=IMP]
[GO:0016887 "ATPase activity" evidence=ISM] [GO:0051304 "chromosome
separation" evidence=IMP] InterPro:IPR024704 InterPro:IPR010935
InterPro:IPR027120 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 PomBase:SPBP4H10.06c Pfam:PF02463 GO:GO:0005524
GO:GO:0005737 GO:GO:0005730 GO:GO:0051301 EMBL:CU329671
GO:GO:0006281 GenomeReviews:CU329671_GR GO:GO:0016887 GO:GO:0006310
GO:GO:0007076 GO:GO:0000939 GO:GO:0000796 GO:GO:0007062
eggNOG:COG1196 SUPFAM:SSF75553 KO:K06674 PANTHER:PTHR18937:SF9
HOGENOM:HOG000163792 EMBL:D30787 PIR:S51623 RefSeq:NP_596180.1
ProteinModelPortal:P41003 IntAct:P41003 STRING:P41003
EnsemblFungi:SPBP4H10.06c.1 GeneID:2541319 KEGG:spo:SPBP4H10.06c
OMA:GTALEIC OrthoDB:EOG4P2T9B NextBio:20802429 GO:GO:0034500
Uniprot:P41003
Length = 1172
Score = 173 (66.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 66/240 (27%), Positives = 106/240 (44%)
Query: 150 VIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRC 208
VI + +FNAI G NGSGKSN++D++ FV G S +RA L L++K Q G ++R
Sbjct: 19 VISNWDDQFNAITGLNGSGKSNILDAICFVLGITNMSTVRAQNLQDLIYKRGQAG-ITRA 77
Query: 209 SVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGV 268
SV I F D + + + R +S Y +NG + + V + + +
Sbjct: 78 SVTIVFNNR-DPASSPIGFENHPQVSVTRQIIMGGTSKYLINGHRALQQNVQNLFQSVQL 136
Query: 269 DLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELEN 328
++ N FLI+Q I K VL K TE L+ ++ + + E KA ++ +
Sbjct: 137 NINNPNFLIMQGRITK--VLNMK----ATEILSMIEEA-SGTRMFEERKEKAFRTMQRKE 189
Query: 329 CVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
+ N + + E + L E K Q + +LE + + K LK E
Sbjct: 190 AKVEEINTLLREEIEPRLTKL-RTEKKTFLEYQHIYNDLERLSHLCTAYDYYKLSLKVEE 248
>CGD|CAL0000340 [details] [associations]
symbol:SMC2 species:5476 "Candida albicans" [GO:0003680 "AT
DNA binding" evidence=IEA] [GO:0000217 "DNA secondary structure
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000939 "condensed chromosome inner kinetochore" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0000799 "nuclear condensin complex" evidence=IEA]
[GO:0070058 "tRNA gene clustering" evidence=IEA] [GO:0007076
"mitotic chromosome condensation" evidence=IEA] InterPro:IPR024704
InterPro:IPR010935 InterPro:IPR027120 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 CGD:CAL0000340
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
eggNOG:COG1196 SUPFAM:SSF75553 EMBL:AACQ01000103 EMBL:AACQ01000102
KO:K06674 PANTHER:PTHR18937:SF9 RefSeq:XP_714465.1
RefSeq:XP_714514.1 ProteinModelPortal:Q59Y26 STRING:Q59Y26
GeneID:3643867 GeneID:3643918 KEGG:cal:CaO19.11106
KEGG:cal:CaO19.3623 Uniprot:Q59Y26
Length = 1171
Score = 180 (68.4 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 48/138 (34%), Positives = 75/138 (54%)
Query: 150 VIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRA-SKIRANKLSVLMHKSDQVGGVSRC 208
VI + +FNAI G NGSGKSN++D++ FV G + S +RA+ L L++K Q G V++
Sbjct: 19 VISNWDAQFNAITGLNGSGKSNILDAICFVLGIASMSTVRASNLQDLIYKRGQAG-VTKA 77
Query: 209 SVAIHFAQI-IDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHG 267
SV I F + K +E P + + R +S Y +NG K + V + +
Sbjct: 78 SVTIVFNNSEVSKSPIGFENCP--TISVTRQIILGGTSKYLINGHKAQQQTVLNLFQSVQ 135
Query: 268 VDLLNNRFLILQEPIAKM 285
+++ N FLI+Q I K+
Sbjct: 136 LNINNPNFLIMQGKITKV 153
Score = 38 (18.4 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 14/93 (15%), Positives = 39/93 (41%)
Query: 296 RTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETK 355
+T L ++ ++ +++ + +L KA E H + + ++ LG TK
Sbjct: 418 KTSTL-KINHLQQQMESDQMKLTKAKTENETLLSAIELHRQFIKTKQLEIDSKLGFEPTK 476
Query: 356 VQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
+ Q+ + + + K ++ + E+ ++
Sbjct: 477 IHQLRDQESELISQQNKFNQQLNHMRREIGNLD 509
>RGD|61991 [details] [associations]
symbol:Smc1a "structural maintenance of chromosomes 1A"
species:10116 "Rattus norvegicus" [GO:0000075 "cell cycle
checkpoint" evidence=ISO;ISS] [GO:0000776 "kinetochore"
evidence=ISO;ISS] [GO:0003682 "chromatin binding" evidence=ISO;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO;ISS] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA;ISO]
[GO:0007067 "mitosis" evidence=IEA] [GO:0007126 "meiosis"
evidence=ISO;IDA] [GO:0009314 "response to radiation"
evidence=ISO;ISS] [GO:0019827 "stem cell maintenance" evidence=ISO]
[GO:0030261 "chromosome condensation" evidence=IEA] [GO:0030893
"meiotic cohesin complex" evidence=ISO;ISS] [GO:0032876 "negative
regulation of DNA endoreduplication" evidence=ISO] [GO:0036033
"mediator complex binding" evidence=ISO] [GO:0042770 "signal
transduction in response to DNA damage" evidence=ISO;ISS]
[GO:0046982 "protein heterodimerization activity" evidence=ISO]
[GO:0051301 "cell division" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
RGD:61991 GO:GO:0005524 GO:GO:0005634 GO:GO:0007126 GO:GO:0005737
GO:GO:0000776 GO:GO:0051301 GO:GO:0007067 GO:GO:0006281
GO:GO:0003682 GO:GO:0042770 GO:GO:0006310 GO:GO:0030261
GO:GO:0009314 GO:GO:0032876 GO:GO:0000075 GO:GO:0007062
eggNOG:COG1196 SUPFAM:SSF75553 GO:GO:0030893 CTD:8243
HOGENOM:HOG000195481 HOVERGEN:HBG039593 KO:K06636 OrthoDB:EOG4HX507
EMBL:AJ005113 IPI:IPI00209018 RefSeq:NP_113871.1 UniGene:Rn.11763
ProteinModelPortal:Q9Z1M9 STRING:Q9Z1M9 PhosphoSite:Q9Z1M9
PRIDE:Q9Z1M9 GeneID:63996 KEGG:rno:63996 NextBio:612558
ArrayExpress:Q9Z1M9 Genevestigator:Q9Z1M9 Uniprot:Q9Z1M9
Length = 1233
Score = 172 (65.6 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 71/255 (27%), Positives = 121/255 (47%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVG--GVSRCSVAIHF 214
RF AIIGPNGSGKSN++D++ FV G + S +R L L+H + VG +R V++ +
Sbjct: 26 RFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAP-VGKPAANRAFVSMVY 84
Query: 215 AQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNR 274
++ E E D AR SS Y +N K V E ++ L G+ +
Sbjct: 85 SE------EGAE-----DRTFARV-IVGGSSEYKINNKVVQLHEYSEELEKLGILIKARN 132
Query: 275 FLILQEPIAKMEVLYGKYDEERT---EKLTRVQLVETDLKALEPELRKA-----VNFLEL 326
FL+ Q + + + K +ERT E+++R + + + E+ KA N+
Sbjct: 133 FLVFQGAVESIAM---KNPKERTALFEEISRSGELAQEYDKRKKEMVKAEEDTQFNYHRK 189
Query: 327 EN-CVQRKH--NEIYQYERYVNMKN-------------LGEHETKVQQMEQELTANLESI 370
+N +RK E + +RY +K+ L +E +++++ +EL + + I
Sbjct: 190 KNIAAERKEAKQEKEEADRYQALKDEVVRAQVQLQLFKLYHNEVEIEKLNKELASKNKEI 249
Query: 371 KKCTDEMESAKTELK 385
+K M+ + ELK
Sbjct: 250 EKDKKRMDKVEDELK 264
Score = 109 (43.4 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 37/102 (36%), Positives = 54/102 (52%)
Query: 126 EIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRAS 185
+IIG ++RF AIIGPNGSGKSN++D++ F ++G S V + G
Sbjct: 19 QIIGP--FQRFTAIIGPNGSGKSNLMDAISF----VLGEKTSNL-RVKTLRDLIHGAPVG 71
Query: 186 KIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEI 227
K AN+ V M S++ G R FA++I + EY+I
Sbjct: 72 KPAANRAFVSMVYSEE-GAEDRT-----FARVIVGGSSEYKI 107
Score = 76 (31.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 27/104 (25%), Positives = 51/104 (49%)
Query: 288 LYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLE-LENCVQRKHNEIYQYE-RYVN 345
L K E +K R+ VE +LK + EL K + + +E ++ K +E+ Q +Y+
Sbjct: 242 LASKNKEIEKDK-KRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYIK 300
Query: 346 MKNLGEHETK-VQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
K H+ K ++ ++ L + KK +M+ + E+ +VE
Sbjct: 301 AKENTSHKIKKLEAAKKSLQNRQKHYKKRKGDMDELEKEMLSVE 344
Score = 61 (26.5 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 27/93 (29%), Positives = 46/93 (49%)
Query: 295 ERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHET 354
+ EK R Q + D L+ E RK V E E +++K EI + ++ + + L E+ T
Sbjct: 391 QELEKFNRDQKADQD--RLDLEERKKV---ETEAKIKQKLREIEENQKRI--EKLEEYIT 443
Query: 355 KVQQMEQELTANLESIKKCTDEMESAKTELKTV 387
+Q +E LE + T+E+E AK + +
Sbjct: 444 TSKQSLEE-QKKLEG--ELTEEVEMAKRRIDEI 473
>UNIPROTKB|Q9Z1M9 [details] [associations]
symbol:Smc1a "Structural maintenance of chromosomes protein
1A" species:10116 "Rattus norvegicus" [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0007062 "sister chromatid
cohesion" evidence=IEA] [GO:0030261 "chromosome condensation"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
RGD:61991 GO:GO:0005524 GO:GO:0005634 GO:GO:0007126 GO:GO:0005737
GO:GO:0000776 GO:GO:0051301 GO:GO:0007067 GO:GO:0006281
GO:GO:0003682 GO:GO:0042770 GO:GO:0006310 GO:GO:0030261
GO:GO:0009314 GO:GO:0032876 GO:GO:0000075 GO:GO:0007062
eggNOG:COG1196 SUPFAM:SSF75553 GO:GO:0030893 CTD:8243
HOGENOM:HOG000195481 HOVERGEN:HBG039593 KO:K06636 OrthoDB:EOG4HX507
EMBL:AJ005113 IPI:IPI00209018 RefSeq:NP_113871.1 UniGene:Rn.11763
ProteinModelPortal:Q9Z1M9 STRING:Q9Z1M9 PhosphoSite:Q9Z1M9
PRIDE:Q9Z1M9 GeneID:63996 KEGG:rno:63996 NextBio:612558
ArrayExpress:Q9Z1M9 Genevestigator:Q9Z1M9 Uniprot:Q9Z1M9
Length = 1233
Score = 172 (65.6 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 71/255 (27%), Positives = 121/255 (47%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVG--GVSRCSVAIHF 214
RF AIIGPNGSGKSN++D++ FV G + S +R L L+H + VG +R V++ +
Sbjct: 26 RFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAP-VGKPAANRAFVSMVY 84
Query: 215 AQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNR 274
++ E E D AR SS Y +N K V E ++ L G+ +
Sbjct: 85 SE------EGAE-----DRTFARV-IVGGSSEYKINNKVVQLHEYSEELEKLGILIKARN 132
Query: 275 FLILQEPIAKMEVLYGKYDEERT---EKLTRVQLVETDLKALEPELRKA-----VNFLEL 326
FL+ Q + + + K +ERT E+++R + + + E+ KA N+
Sbjct: 133 FLVFQGAVESIAM---KNPKERTALFEEISRSGELAQEYDKRKKEMVKAEEDTQFNYHRK 189
Query: 327 EN-CVQRKH--NEIYQYERYVNMKN-------------LGEHETKVQQMEQELTANLESI 370
+N +RK E + +RY +K+ L +E +++++ +EL + + I
Sbjct: 190 KNIAAERKEAKQEKEEADRYQALKDEVVRAQVQLQLFKLYHNEVEIEKLNKELASKNKEI 249
Query: 371 KKCTDEMESAKTELK 385
+K M+ + ELK
Sbjct: 250 EKDKKRMDKVEDELK 264
Score = 109 (43.4 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 37/102 (36%), Positives = 54/102 (52%)
Query: 126 EIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRAS 185
+IIG ++RF AIIGPNGSGKSN++D++ F ++G S V + G
Sbjct: 19 QIIGP--FQRFTAIIGPNGSGKSNLMDAISF----VLGEKTSNL-RVKTLRDLIHGAPVG 71
Query: 186 KIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEI 227
K AN+ V M S++ G R FA++I + EY+I
Sbjct: 72 KPAANRAFVSMVYSEE-GAEDRT-----FARVIVGGSSEYKI 107
Score = 76 (31.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 27/104 (25%), Positives = 51/104 (49%)
Query: 288 LYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLE-LENCVQRKHNEIYQYE-RYVN 345
L K E +K R+ VE +LK + EL K + + +E ++ K +E+ Q +Y+
Sbjct: 242 LASKNKEIEKDK-KRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYIK 300
Query: 346 MKNLGEHETK-VQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
K H+ K ++ ++ L + KK +M+ + E+ +VE
Sbjct: 301 AKENTSHKIKKLEAAKKSLQNRQKHYKKRKGDMDELEKEMLSVE 344
Score = 61 (26.5 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 27/93 (29%), Positives = 46/93 (49%)
Query: 295 ERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHET 354
+ EK R Q + D L+ E RK V E E +++K EI + ++ + + L E+ T
Sbjct: 391 QELEKFNRDQKADQD--RLDLEERKKV---ETEAKIKQKLREIEENQKRI--EKLEEYIT 443
Query: 355 KVQQMEQELTANLESIKKCTDEMESAKTELKTV 387
+Q +E LE + T+E+E AK + +
Sbjct: 444 TSKQSLEE-QKKLEG--ELTEEVEMAKRRIDEI 473
>ZFIN|ZDB-GENE-040426-57 [details] [associations]
symbol:smc1al "structural maintenance of chromosomes
1A, like" species:7955 "Danio rerio" [GO:0051276 "chromosome
organization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0030261 "chromosome condensation"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007062
"sister chromatid cohesion" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
ZFIN:ZDB-GENE-040426-57 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
eggNOG:COG1196 SUPFAM:SSF75553 HOGENOM:HOG000195481
HOVERGEN:HBG039593 KO:K06636 OrthoDB:EOG4HX507
GeneTree:ENSGT00580000081569 EMBL:CR376802 EMBL:CT025883
EMBL:AY648730 IPI:IPI00501499 RefSeq:NP_997975.2 UniGene:Dr.76942
STRING:Q6DRM9 Ensembl:ENSDART00000081016 GeneID:403060
KEGG:dre:403060 CTD:403060 InParanoid:Q6DRM9 OMA:NIGEVAN
NextBio:20816857 Uniprot:Q6DRM9
Length = 1233
Score = 168 (64.2 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 69/265 (26%), Positives = 121/265 (45%)
Query: 145 SGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGG 204
S K I +F AIIGPNGSGKSN++D++ FV + S +R L L+H +
Sbjct: 14 SYKGRQIIGPFHKFTAIIGPNGSGKSNLMDAISFVLAEKTSNLRVKTLKDLIHGAP---- 69
Query: 205 VSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLR 264
V + + F ++ Y+ G +L +R +SS Y +N K V + ++ L
Sbjct: 70 VGKPAANRAFVTMV------YQQDGGQELSFSRIII-GSSSEYRINNKVVGLSDYSEELE 122
Query: 265 DHGVDLLNNRFLILQEPIAKMEVLYGKYDEERT---EKLTRVQLVETDLKALEPELRKA- 320
G+ + FL+ Q + + + K +ERT E+++R + + + E+ KA
Sbjct: 123 KLGILIKARNFLVFQGAVESIAM---KNPKERTALFEEISRSGELAQEYDRCKKEMVKAE 179
Query: 321 ----VNFLELEN-CVQRKH--NEIYQYERYVNMKN-------------LGEHETKVQQME 360
N+ +N +RK E + ERY +K+ L +E++++++
Sbjct: 180 EDTQFNYHRKKNIAAERKEAKQEKEEAERYQRLKDEVVRAHVQLQLFKLYHNESEIEKLN 239
Query: 361 QELTANLESIKKCTDEMESAKTELK 385
+EL + I K M+ + ELK
Sbjct: 240 RELAHRNKEIDKDRKRMDRVEEELK 264
Score = 50 (22.7 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 84 NFKSYAGYVTLGPFN 98
NFKSY G +GPF+
Sbjct: 11 NFKSYKGRQIIGPFH 25
>ASPGD|ASPL0000004872 [details] [associations]
symbol:smcB species:162425 "Emericella nidulans"
[GO:0007076 "mitotic chromosome condensation" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000796 "condensin
complex" evidence=IEA] [GO:0000939 "condensed chromosome inner
kinetochore" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR024704
InterPro:IPR010935 InterPro:IPR027120 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0006281
EMBL:BN001301 GO:GO:0006310 GO:GO:0030261 EMBL:AACD01000101
GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553 KO:K06674
PANTHER:PTHR18937:SF9 HOGENOM:HOG000163792 OMA:CQNGKIP
OrthoDB:EOG4P2T9B RefSeq:XP_663503.1 ProteinModelPortal:Q5B0N1
STRING:Q5B0N1 EnsemblFungi:CADANIAT00007134 GeneID:2870708
KEGG:ani:AN5899.2 Uniprot:Q5B0N1
Length = 1179
Score = 169 (64.5 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 67/246 (27%), Positives = 114/246 (46%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FN+I G NGSGKSN++D++ FV G S +RA L L++K Q G V++ SV I F
Sbjct: 27 FNSITGLNGSGKSNILDAICFVLGITNMSTVRAQNLQDLIYKRGQAG-VTKASVTIVFDN 85
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
D + + R +S Y +NG + + V + + +++ N FL
Sbjct: 86 R-DTAKSPIGFEEYATISVTRQIVLGGTSKYLINGHRAQQQTVQNLFQSVQLNINNPNFL 144
Query: 277 ILQEPIAKM------EVLY------G-KYDEERTEKLTRVQLVETDLKALEPE-LRKAVN 322
I+Q I K+ E+L G + E+R EK + + + DLK E E L K
Sbjct: 145 IMQGRITKVLNMKAVEILSMIEEAAGTRMFEDRREKAAKT-MAKKDLKLQEIEGLLKE-- 201
Query: 323 FLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKT 382
E+E +++ E + + +N E T++ L + + ++ +E E K
Sbjct: 202 --EIEPKLEKLRAEKRAFLDFQQTQNDLERLTRLVVAHDYLRSG-DRLRASGEECEKKKR 258
Query: 383 ELKTVE 388
+++ +E
Sbjct: 259 KIQALE 264
>UNIPROTKB|Q97QG7 [details] [associations]
symbol:smc "Chromosome partition protein Smc"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR024704 HAMAP:MF_01894
InterPro:IPR010935 InterPro:IPR011890 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0006310 EMBL:AE005672
GenomeReviews:AE005672_GR GO:GO:0030261 GO:GO:0007062
SUPFAM:SSF75553 HOGENOM:HOG000036392 KO:K03529 TIGRFAMs:TIGR02168
HSSP:Q9X0R4 OMA:GDITKFI PIR:G95144 RefSeq:NP_345712.1
ProteinModelPortal:Q97QG7 EnsemblBacteria:EBSTRT00000025640
GeneID:931760 KEGG:spn:SP_1247 PATRIC:19706887
ProtClustDB:CLSK877065 Uniprot:Q97QG7
Length = 1179
Score = 169 (64.5 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 61/237 (25%), Positives = 114/237 (48%)
Query: 160 AIIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLSVLMHKSDQVGGVSRCSVAIHFAQII 218
A++GPNGSGKSN+ +S+ + G + K +R K+ ++ G SR +++A ++
Sbjct: 28 AVVGPNGSGKSNITESLRWALGESSVKSLRGGKMPDIIF----AGTESR--KPLNYASVV 81
Query: 219 DKPNEEYEIIP--GTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
+ I G ++ + R + S Y ++GKKV +++ + D G+ + F
Sbjct: 82 VTLDNHDGFIKDAGQEIRVERHVYRSGDSEYKIDGKKVRLRDIHDLFLDTGLG--RDSFS 139
Query: 277 ILQEPIAKMEVLYGKYDEERT---EKLTRVQLVETDLKALEPELRKAVNFLE-LENCVQR 332
I+ + K+E ++ EER E+ V +T K E +L++ + L+ LE+ +
Sbjct: 140 IISQ--GKVEEIFNSKPEERRAIFEEAAGVLKYKTRRKETESKLQQTQDNLDRLEDIIYE 197
Query: 333 KHNEIYQYERYV-NMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
N+I E+ N + + E Q+ L + IK+ E+ES + EL V+
Sbjct: 198 LDNQIKPLEKQAENARKFLDLEG--QRKAIYLDVLVAQIKENKAELESTEEELTQVQ 252
>WB|WBGene00001860 [details] [associations]
symbol:him-1 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0007064 "mitotic
sister chromatid cohesion" evidence=ISS] [GO:0007059 "chromosome
segregation" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0010165 "response to X-ray" evidence=IMP]
[GO:0009411 "response to UV" evidence=IMP] [GO:0008278 "cohesin
complex" evidence=ISS;IPI] [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IDA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0009411 GO:GO:0002119 GO:GO:0003677
GO:GO:0006281 GO:GO:0040011 GO:GO:0000790 GO:GO:0006310
GO:GO:0040035 GO:GO:0030261 GO:GO:0010165 GO:GO:0007064
GO:GO:0008278 eggNOG:COG1196 SUPFAM:SSF75553 HOGENOM:HOG000195481
KO:K06636 OMA:NALVCET GeneTree:ENSGT00580000081569 EMBL:FO081198
RefSeq:NP_001040658.2 UniGene:Cel.5375 ProteinModelPortal:O01789
SMR:O01789 STRING:O01789 PaxDb:O01789 EnsemblMetazoa:F28B3.7a.1
EnsemblMetazoa:F28B3.7a.2 GeneID:172116 KEGG:cel:CELE_F28B3.7
UCSC:F28B3.7a.1 CTD:172116 WormBase:F28B3.7a InParanoid:O01789
NextBio:874073 ArrayExpress:O01789 Uniprot:O01789
Length = 1262
Score = 162 (62.1 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 61/234 (26%), Positives = 107/234 (45%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSR-CSVAIHFA 215
RF AIIGPNGSGKSN++D++ FV G + S +R K + L+H + V++ C V ++
Sbjct: 38 RFTAIIGPNGSGKSNLMDAISFVLGEKPSSLRVRKYADLIHGAPINKPVAKKCRVTMN-- 95
Query: 216 QIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRF 275
Y+ G R + +S + L+G+ V ++ + + + F
Sbjct: 96 ---------YKYSDGKVKAFTR-GVNNGTSEHLLDGQTVTSAAYSQEMESINIFIKARNF 145
Query: 276 LILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHN 335
L+ Q I + + K + E+L+R + + + L+ E+ KA + + N K
Sbjct: 146 LVYQGAIENIAMKTPKERTQLFEELSRSHEFQAEYERLKVEMTKAEDDTQ-HN--MNKRR 202
Query: 336 EIYQYERYVNMKNLGEHETKVQQMEQELTAN-----LESIKKCTDEMESAKTEL 384
I Q +R M+ + K Q M+ EL A L + C ++ +K E+
Sbjct: 203 GIAQEKREAKMEK--DEAEKYQTMKNELAAKSTMLFLHQLFHCERTIDESKEEI 254
Score = 54 (24.1 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 84 NFKSYAGYVTLGPF 97
NFKSY G T+GPF
Sbjct: 23 NFKSYKGKHTIGPF 36
>DICTYBASE|DDB_G0291752 [details] [associations]
symbol:smc1 "structural maintenance of chromosome
protein" species:44689 "Dictyostelium discoideum" [GO:0051276
"chromosome organization" evidence=IEA] [GO:0030261 "chromosome
condensation" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=ISS] [GO:0042770
"signal transduction in response to DNA damage" evidence=ISS]
[GO:0008280 "cohesin core heterodimer" evidence=ISS] [GO:0007064
"mitotic sister chromatid cohesion" evidence=ISS] [GO:0007052
"mitotic spindle organization" evidence=ISS] [GO:0003777
"microtubule motor activity" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0000075 "cell cycle checkpoint"
evidence=ISS] [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR024704
InterPro:IPR010935 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 dictyBase:DDB_G0291752 Pfam:PF02463
GO:GO:0005524 GO:GO:0005634 GenomeReviews:CM000155_GR GO:GO:0007052
GO:GO:0006281 GO:GO:0003682 EMBL:AAFI02000182 GO:GO:0042770
GO:GO:0006310 GO:GO:0046982 GO:GO:0030261 GO:GO:0003777
GO:GO:0000075 GO:GO:0007064 eggNOG:COG1196 SUPFAM:SSF75553
GO:GO:0008280 KO:K06636 OMA:NALVCET RefSeq:XP_629977.1
ProteinModelPortal:Q54E85 STRING:Q54E85 EnsemblProtists:DDB0219931
GeneID:8628307 KEGG:ddi:DDB_G0291752 InParanoid:Q54E85
Uniprot:Q54E85
Length = 1373
Score = 166 (63.5 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 61/258 (23%), Positives = 123/258 (47%)
Query: 145 SGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMH------K 198
S K N + F+ +IGPNG GKSN++D+++FV G+ +S+IR+ KL+ L++ K
Sbjct: 13 SYKGNPLIGPFKDFSCVIGPNGRGKSNIMDAIIFVLGHNSSQIRSTKLNELVNTHIVTDK 72
Query: 199 SDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKE 258
++ GG + VAI+F N + G + +R N S Y +V ++
Sbjct: 73 NNNEGGDNSTYVAINF-------NHQ-----GNNYRFSRKII-GNGSQYFFEQTQVSAEQ 119
Query: 259 VAKVLRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELR 318
K L+D G+D+ F + Q + + K + ++ + ++ + L E
Sbjct: 120 YQKHLKDIGIDIGTKNFFVFQGDVESIATQNPKQISAFIDDISGSRALKFEYDRLLGEKS 179
Query: 319 KAVNFLELENCVQRKHN--EIYQY-ERYVNMKNLGEHETKVQQM--EQELTANLESIKKC 373
K + + + +RK E QY E++ +K + +V + +Q+L ++ K+
Sbjct: 180 KCEDDV-FASYAKRKTIAFEKEQYKEQWTEVKEYQSMQDRVDSLKTDQQLAKLYQTTKEM 238
Query: 374 TDE---MESAKTELKTVE 388
E ++ +K ++++++
Sbjct: 239 RKEQKLLDESKQQIQSIQ 256
Score = 49 (22.3 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 84 NFKSYAGYVTLGPF 97
NFKSY G +GPF
Sbjct: 10 NFKSYKGNPLIGPF 23
>WB|WBGene00003367 [details] [associations]
symbol:mix-1 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040039
"inductive cell migration" evidence=IMP] [GO:0042464 "dosage
compensation by hypoactivation of X chromosome" evidence=IMP]
[GO:0000070 "mitotic sister chromatid segregation" evidence=IMP]
[GO:0007076 "mitotic chromosome condensation" evidence=IMP]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0000775
"chromosome, centromeric region" evidence=IDA] [GO:0046536 "dosage
compensation complex" evidence=IPI] InterPro:IPR010935
InterPro:IPR027120 Pfam:PF06470 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0009792 GO:GO:0000775
GO:GO:0051301 GO:GO:0002119 GO:GO:0040039 GO:GO:0000793
GO:GO:0007076 EMBL:Z46935 GO:GO:0042464 eggNOG:COG1196
GO:GO:0046536 SUPFAM:SSF75553 EMBL:U96387 PIR:T23744 PIR:T23981
RefSeq:NP_496331.1 UniGene:Cel.8608 ProteinModelPortal:Q09591
SMR:Q09591 IntAct:Q09591 STRING:Q09591 PaxDb:Q09591
EnsemblMetazoa:M106.1 GeneID:174669 KEGG:cel:CELE_M106.1
UCSC:M106.1 CTD:174669 WormBase:M106.1 GeneTree:ENSGT00550000074857
HOGENOM:HOG000016791 InParanoid:Q09591 KO:K06674 OMA:KSYQKHT
NextBio:884988 PANTHER:PTHR18937:SF9 Uniprot:Q09591
Length = 1244
Score = 136 (52.9 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 61/239 (25%), Positives = 107/239 (44%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ F+ G + IRA MH+ GG ++ V + F
Sbjct: 27 FNAITGYNGSGKSNILDSICFIMGINKLDNIRAKS----MHELISHGG-TKAIVQVRFDN 81
Query: 217 IIDKPNEEYEIIPGTDLEIAR--TAFYDN---SSYYTLNGKKVHFKEVAKVLRDHGVDLL 271
DK + + ++ + R TA ++ YTLNG ++ R G+++
Sbjct: 82 T-DKRCSPFGMEHLDEIVVQRIITAQATGKGCATSYTLNGHAATNGKMQDFFRGVGLNVN 140
Query: 272 NNRFLILQEPIA-----KMEVLYGKYDEERTEKL--TRVQLVETDLKALEPELRKAVNFL 324
N FLI+Q I K E + G +E K+ + + E + + +L++
Sbjct: 141 NPHFLIMQGRITTVLNMKPEEILGMVEEAAGTKMYDQKKKDAEKTMFLKDAKLKEVDRIF 200
Query: 325 E--LENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAK 381
+ ++ + + + +K L E+ ++ + Q E++KK E+E AK
Sbjct: 201 QSSIDPRMVKFREDRKNMVEVTRLKKLKENFSRKYEAFQYFQT-CEAVKKSAKEIEDAK 258
Score = 80 (33.2 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 136 FNAIIGPNGSGKSNVIDSMLF 156
FNAI G NGSGKSN++DS+ F
Sbjct: 27 FNAITGYNGSGKSNILDSICF 47
>UNIPROTKB|Q09591 [details] [associations]
symbol:mix-1 "Mitotic chromosome and
X-chromosome-associated protein mix-1" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR010935 InterPro:IPR027120 Pfam:PF06470 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0009792
GO:GO:0000775 GO:GO:0051301 GO:GO:0002119 GO:GO:0040039
GO:GO:0000793 GO:GO:0007076 EMBL:Z46935 GO:GO:0042464
eggNOG:COG1196 GO:GO:0046536 SUPFAM:SSF75553 EMBL:U96387 PIR:T23744
PIR:T23981 RefSeq:NP_496331.1 UniGene:Cel.8608
ProteinModelPortal:Q09591 SMR:Q09591 IntAct:Q09591 STRING:Q09591
PaxDb:Q09591 EnsemblMetazoa:M106.1 GeneID:174669
KEGG:cel:CELE_M106.1 UCSC:M106.1 CTD:174669 WormBase:M106.1
GeneTree:ENSGT00550000074857 HOGENOM:HOG000016791 InParanoid:Q09591
KO:K06674 OMA:KSYQKHT NextBio:884988 PANTHER:PTHR18937:SF9
Uniprot:Q09591
Length = 1244
Score = 136 (52.9 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 61/239 (25%), Positives = 107/239 (44%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ F+ G + IRA MH+ GG ++ V + F
Sbjct: 27 FNAITGYNGSGKSNILDSICFIMGINKLDNIRAKS----MHELISHGG-TKAIVQVRFDN 81
Query: 217 IIDKPNEEYEIIPGTDLEIAR--TAFYDN---SSYYTLNGKKVHFKEVAKVLRDHGVDLL 271
DK + + ++ + R TA ++ YTLNG ++ R G+++
Sbjct: 82 T-DKRCSPFGMEHLDEIVVQRIITAQATGKGCATSYTLNGHAATNGKMQDFFRGVGLNVN 140
Query: 272 NNRFLILQEPIA-----KMEVLYGKYDEERTEKL--TRVQLVETDLKALEPELRKAVNFL 324
N FLI+Q I K E + G +E K+ + + E + + +L++
Sbjct: 141 NPHFLIMQGRITTVLNMKPEEILGMVEEAAGTKMYDQKKKDAEKTMFLKDAKLKEVDRIF 200
Query: 325 E--LENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAK 381
+ ++ + + + +K L E+ ++ + Q E++KK E+E AK
Sbjct: 201 QSSIDPRMVKFREDRKNMVEVTRLKKLKENFSRKYEAFQYFQT-CEAVKKSAKEIEDAK 258
Score = 80 (33.2 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 136 FNAIIGPNGSGKSNVIDSMLF 156
FNAI G NGSGKSN++DS+ F
Sbjct: 27 FNAITGYNGSGKSNILDSICF 47
>UNIPROTKB|P51834 [details] [associations]
symbol:smc "Chromosome partition protein Smc"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] InterPro:IPR024704 HAMAP:MF_01894
InterPro:IPR010935 InterPro:IPR011890 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0003677
GO:GO:0006281 GO:GO:0006310 EMBL:AL009126 GenomeReviews:AL009126_GR
GO:GO:0030261 GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553
EMBL:D64116 EMBL:D49781 PIR:G69708 RefSeq:NP_389476.2
ProteinModelPortal:P51834 SMR:P51834 IntAct:P51834
EnsemblBacteria:EBBACT00000001044 GeneID:938085 KEGG:bsu:BSU15940
PATRIC:18974993 GenoList:BSU15940 HOGENOM:HOG000036392 KO:K03529
ProtClustDB:CLSK2765274 BioCyc:BSUB:BSU15940-MONOMER
TIGRFAMs:TIGR02168 Uniprot:P51834
Length = 1186
Score = 138 (53.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 53/236 (22%), Positives = 119/236 (50%)
Query: 160 AIIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLSVLMHKSDQVGGVSRCSVAIHFAQI- 217
A++GPNGSGKSN+ D++ +V G ++++ +R K+ ++ G SR ++ A++
Sbjct: 28 AVVGPNGSGKSNITDAIRWVLGEQSARSLRGGKMEDIIF----AGSDSR--KRLNLAEVT 81
Query: 218 IDKPNEEYEI-IPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
+ N+++ + I ++ + R + S + +N + K++ + D G+ F
Sbjct: 82 LTLDNDDHFLPIDFHEVSVTRRVYRSGESEFLINNQPCRLKDIIDLFMDSGLG--KEAFS 139
Query: 277 ILQEPIAKMEVLYGKYDEERT--EKLTRVQLVETDLKALEPELRKAV-NFLELENCVQRK 333
I+ + + E+L K ++ R+ E+ V +T K E +L + N +E+ +
Sbjct: 140 IISQGKVE-EILSSKAEDRRSIFEEAAGVLKYKTRKKKAENKLFETQDNLNRVEDILHEL 198
Query: 334 HNEIYQYERYVNM-KNLGEHETKVQQMEQELTA-NLESI--KKCT--DEMESAKTE 383
++ + ++ K+ E + +++ +E LTA ++E + K T ++++ AK E
Sbjct: 199 EGQVEPLKIQASIAKDYLEKKKELEHVEIALTAYDIEELHGKWSTLKEKVQMAKEE 254
Score = 75 (31.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 126 EIIGTNRYKRFNAIIGPNGSGKSNVIDSM 154
E I + K A++GPNGSGKSN+ D++
Sbjct: 16 ERISVDFVKGVTAVVGPNGSGKSNITDAI 44
>TAIR|locus:2079107 [details] [associations]
symbol:ATSMC2 "AT3G47460" species:3702 "Arabidopsis
thaliana" [GO:0005215 "transporter activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005694 "chromosome" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR024704 InterPro:IPR010935 InterPro:IPR027120
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0007126
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005694 GO:GO:0051301
GO:GO:0007067 GO:GO:0006281 GO:GO:0005215 GO:GO:0006310
GO:GO:0030261 EMBL:AL096860 EMBL:AL132955 UniGene:At.35803
UniGene:At.71101 GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553
KO:K06674 PANTHER:PTHR18937:SF9 HSSP:P32908 HOGENOM:HOG000163792
ProtClustDB:CLSN2685173 IPI:IPI00530229 PIR:T45706
RefSeq:NP_190330.1 ProteinModelPortal:Q9SN90 SMR:Q9SN90
STRING:Q9SN90 PaxDb:Q9SN90 PRIDE:Q9SN90 EnsemblPlants:AT3G47460.1
GeneID:823900 KEGG:ath:AT3G47460 TAIR:At3g47460 InParanoid:Q9SN90
OMA:WIASERQ PhylomeDB:Q9SN90 Genevestigator:Q9SN90 Uniprot:Q9SN90
Length = 1171
Score = 168 (64.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 60/202 (29%), Positives = 98/202 (48%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ FV G ++RA L L++K Q G ++R +V++ F
Sbjct: 27 FNAITGLNGSGKSNILDSICFVLGITNLQQVRAANLQELVYKQGQAG-ITRATVSVTFDN 85
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDL-LNN-R 274
++ +++ + R + Y +NGK +V + H V L +NN
Sbjct: 86 S-ERNRSPLGHEDHSEITVTRQIVVGGKNKYLINGKLAQPNQVQNLF--HSVQLNVNNPH 142
Query: 275 FLILQEPIAK------MEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKA--VNFL-- 324
FLI+Q I K ME+L +E ++ + E LK LE + K +N L
Sbjct: 143 FLIMQGRITKVLNMKPMEIL-SMLEEAAGTRMYENKK-EAALKTLEKKQTKVDEINKLLE 200
Query: 325 -ELENCVQRKHNEIYQYERYVN 345
++ +++ E QY ++ N
Sbjct: 201 KDILPALEKLRREKSQYMQWAN 222
Score = 42 (19.8 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 347 KNLGEHETKVQQ--MEQELTANLESIKKCTDEMESAKTELKTV 387
K+L HE ++ MEQE +S K ++ S +T++ T+
Sbjct: 805 KDLKGHENVRERLVMEQEAVTQEQSYLK--SQLTSLRTQISTL 845
Score = 41 (19.5 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 9/41 (21%), Positives = 24/41 (58%)
Query: 348 NLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
++G ET+++Q+ +++ + +K+ ++ S + E VE
Sbjct: 406 SVGTAETELKQLNTKISHCEKELKEKKSQLMSKQDEAVAVE 446
>ZFIN|ZDB-GENE-090506-9 [details] [associations]
symbol:smc1a "structural maintenance of chromosomes
1A" species:7955 "Danio rerio" [GO:0030261 "chromosome
condensation" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
ZFIN:ZDB-GENE-090506-9 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
SUPFAM:SSF75553 CTD:8243 KO:K06636 GeneTree:ENSGT00580000081569
EMBL:CR354431 IPI:IPI00506664 RefSeq:NP_001155103.1
UniGene:Dr.120420 Ensembl:ENSDART00000078148 GeneID:559665
KEGG:dre:559665 OMA:ERIRHAN NextBio:20883076 Uniprot:E7F0X6
Length = 1232
Score = 159 (61.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 70/267 (26%), Positives = 122/267 (45%)
Query: 145 SGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVG- 203
S K I +F AIIGPNGSGKSN++D++ FV + S +R L L+H + VG
Sbjct: 14 SYKGRQIIGPFHKFTAIIGPNGSGKSNLMDAISFVLAEKTSNLRVKTLKDLIHGAP-VGK 72
Query: 204 -GVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKV 262
+R V++ + + D G + R A +SS Y +N K V + ++
Sbjct: 73 PAANRAFVSMVYCE--DN---------GEECTFTR-AIIGSSSEYRINSKVVGLSDYSEE 120
Query: 263 LRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEERT---EKLTRVQLVETDLKALEPELRK 319
L G+ + FL+ Q + + + K +ERT E+++R + + + E+ K
Sbjct: 121 LEKLGILIKARNFLVFQGAVESIAM---KNPKERTALFEEISRSGELAQEYDRRKKEMVK 177
Query: 320 A-----VNFLELEN-CVQRKH--NEIYQYERYVNMKN-------------LGEHETKVQQ 358
A ++ +N +RK E + ERY +K+ L +E ++++
Sbjct: 178 AEEDTQFSYHRKKNIAAERKEAKQEKEEAERYQRLKDEVVRAHVQLQLFKLYHNEEEIEK 237
Query: 359 MEQELTANLESIKKCTDEMESAKTELK 385
+ +EL+ I K +M+ + ELK
Sbjct: 238 LNRELSQRNREIDKDRKKMDHVEEELK 264
Score = 50 (22.7 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 84 NFKSYAGYVTLGPFN 98
NFKSY G +GPF+
Sbjct: 11 NFKSYKGRQIIGPFH 25
>ZFIN|ZDB-GENE-030131-105 [details] [associations]
symbol:smc2 "structural maintenance of chromosomes
2" species:7955 "Danio rerio" [GO:0030261 "chromosome condensation"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007062
"sister chromatid cohesion" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0007076 "mitotic chromosome condensation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0000796 "condensin complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR024704 InterPro:IPR010935 InterPro:IPR027120
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 ZFIN:ZDB-GENE-030131-105 GO:GO:0005524 GO:GO:0005634
GO:GO:0005694 GO:GO:0006281 GO:GO:0006310 GO:GO:0030261
GO:GO:0007062 SUPFAM:SSF75553 GeneTree:ENSGT00550000074857
PANTHER:PTHR18937:SF9 EMBL:BX548248 IPI:IPI00500731
Ensembl:ENSDART00000008616 ArrayExpress:F1R0P1 Bgee:F1R0P1
Uniprot:F1R0P1
Length = 1232
Score = 161 (61.7 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 56/242 (23%), Positives = 113/242 (46%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
FNAI G NGSGKSN++DS+ F+ G S++RA L L++K+ + G+++ +V+I F
Sbjct: 27 FNAITGLNGSGKSNILDSICFLLGISNLSQVRATNLQDLVYKNG-LAGITKATVSITFDN 85
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
+K ++ I R + Y +NG + V + G+++ N FL
Sbjct: 86 S-NKKQSPLGFETHDEITITRQVVIGGRNKYLINGVNANNLRVQDLFCSVGLNVNNPHFL 144
Query: 277 ILQEPIAKM------EVLYGKYDEERTEKLTRVQLVETD--LKALEPELRKAVNFL--EL 326
I+Q I K+ E+L +E ++ + + ++ + +L++ L E+
Sbjct: 145 IMQGRITKVLNMKPPEIL-AMIEEAAGTRMYECKKISAQKTIEKKDAKLKEIQTILDEEI 203
Query: 327 ENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKT 386
+++ E Y Y + EH +++ + A E+ K +E++ ++ +
Sbjct: 204 TPAMEKLKEERASYLEYQKLMREIEHLSRLYVAYLFVCAE-ETKLKSNEELQEMQSSIAK 262
Query: 387 VE 388
++
Sbjct: 263 LQ 264
>UNIPROTKB|Q10970 [details] [associations]
symbol:smc "Chromosome partition protein Smc" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR024704 HAMAP:MF_01894 InterPro:IPR010935
InterPro:IPR011890 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0005618 GO:GO:0005694 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006310 EMBL:BX842581 GO:GO:0030261
GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553 KO:K03529
TIGRFAMs:TIGR02168 EMBL:AJ414609 PIR:B70748 RefSeq:NP_217438.2
RefSeq:NP_337503.1 RefSeq:YP_006516375.1 ProteinModelPortal:Q10970
SMR:Q10970 PhosSite:P12071629 PRIDE:Q10970
EnsemblBacteria:EBMYCT00000000305 EnsemblBacteria:EBMYCT00000069167
GeneID:13317715 GeneID:887179 GeneID:925284 KEGG:mtc:MT2990
KEGG:mtu:Rv2922c KEGG:mtv:RVBD_2922c PATRIC:18128344
TubercuList:Rv2922c HOGENOM:HOG000036389 OMA:GDITKFI
ProtClustDB:CLSK881165 Uniprot:Q10970
Length = 1205
Score = 158 (60.7 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 60/232 (25%), Positives = 104/232 (44%)
Query: 160 AIIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLS-VLMHKSDQVGGVSRCSVAIHFAQI 217
A++GPNGSGKSNV+D++ +V G + +K +R K+ V+ + + R V +
Sbjct: 28 AVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGKMEDVIFAGTSSRAPLGRAEVTVS---- 83
Query: 218 IDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLI 277
ID + I T++ I R F D +S Y +NG +V ++L D G+ +I
Sbjct: 84 IDNSDNALPI-EYTEVSITRRMFRDGASEYEINGSSCRLMDVQELLSDSGIG--REMHVI 140
Query: 278 LQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEI 337
+ + K+E + E+R + V K E LRK N + R +
Sbjct: 141 VGQ--GKLEEILQSRPEDRRAFIEEAAGVLKHRKRKEKALRKLDTMAA--N-LARLTDLT 195
Query: 338 YQYERYVNMKNLGEHETKVQQMEQELTANLES--IKKCTDEMESAKTELKTV 387
+ R +K LG + + Q + A+L ++ D++ S + E + V
Sbjct: 196 TELRR--QLKPLGR-QAEAAQRAAAIQADLRDARLRLAADDLVSRRAEREAV 244
>TIGR_CMR|CHY_1443 [details] [associations]
symbol:CHY_1443 "chromosome segregation protein SMC"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0005524 "ATP binding" evidence=ISS] [GO:0007059 "chromosome
segregation" evidence=ISS] [GO:0030261 "chromosome condensation"
evidence=ISS] InterPro:IPR024704 HAMAP:MF_01894 InterPro:IPR010935
InterPro:IPR011890 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0006281 GO:GO:0006310 GO:GO:0030261
GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553 HOGENOM:HOG000036392
KO:K03529 TIGRFAMs:TIGR02168 OMA:GDITKFI RefSeq:YP_360275.1
ProteinModelPortal:Q3AC59 STRING:Q3AC59 GeneID:3728135
KEGG:chy:CHY_1443 PATRIC:21276017
BioCyc:CHYD246194:GJCN-1442-MONOMER Uniprot:Q3AC59
Length = 1185
Score = 141 (54.7 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 49/198 (24%), Positives = 96/198 (48%)
Query: 161 IIGPNGSGKSNVIDSMLFVFGYRASKI-RANKLSVLMHKSDQVGGVSRCSVAIHFAQIID 219
I+GPNGSGKSNV +++ + G +KI R+ + ++ Q G +A I+D
Sbjct: 28 IVGPNGSGKSNVAEAIRWALGETKTKILRSERQQDVIFTGSQ--GRKPVGMA-EVTLILD 84
Query: 220 KPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQ 279
N+ + + P ++ I R F S + +N K++ ++L D G+ + + I+
Sbjct: 85 NSNKHFPL-PYAEIAITRRFFRSGESEFYINKSPCRLKDIHELLVDTGLG--KHGYAIIG 141
Query: 280 EPIAKMEVLYGKYDEERT--EK---LTRVQLVETDLKALEPELRKAVNFL-----ELENC 329
+ E+L+ +E+R+ E+ + R ++ E + K E + + L EL N
Sbjct: 142 QGQVD-EILFSSPEEKRSYLEEAAGINRFRMRELEAKKKLLETQNGITRLNDLTNELTNQ 200
Query: 330 VQRKHNEIYQYERYVNMK 347
+Q K ++ + + Y+ +K
Sbjct: 201 LQAKEQDVIKAKTYLTLK 218
Score = 64 (27.6 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 139 IIGPNGSGKSNVIDSM 154
I+GPNGSGKSNV +++
Sbjct: 28 IVGPNGSGKSNVAEAI 43
>UNIPROTKB|Q81ZL2 [details] [associations]
symbol:smc "Chromosome partition protein Smc"
species:227377 "Coxiella burnetii RSA 493" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR024704 HAMAP:MF_01894
InterPro:IPR010935 InterPro:IPR011890 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0003677
GO:GO:0006281 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006310
GO:GO:0030261 GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553
KO:K03529 TIGRFAMs:TIGR02168 EMBL:AJ543641 RefSeq:NP_819572.1
HSSP:Q9X0R4 ProteinModelPortal:Q81ZL2 PRIDE:Q81ZL2 GeneID:1208425
KEGG:cbu:CBU_0540 PATRIC:17929777 HOGENOM:HOG000036391 OMA:WARISKL
ProtClustDB:CLSK914134 BioCyc:CBUR227377:GJ7S-543-MONOMER
Uniprot:Q81ZL2
Length = 1169
Score = 153 (58.9 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 64/250 (25%), Positives = 117/250 (46%)
Query: 159 NAIIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLS-VLMHKSDQVGGVSRCSVAIHFAQ 216
NAI+GPNG GKSNV+D++ +V G ++K +R +S V+ + + V + S+ +HF
Sbjct: 27 NAIVGPNGCGKSNVVDAVRWVIGETSAKQLRGQSMSDVIFNGTTSRKPVGKASIELHFDN 86
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
+ EY G ++ I R D S Y +NG V ++V V G L +
Sbjct: 87 SEGRIGGEYAKY-G-EIAIRREVERDGQSNYFINGAHVRRRDVVDVFL--GTGLGPRSYA 142
Query: 277 ILQEPI------AKMEVL--Y-------GKYDEERTEKLTRVQLVETDLKALEPELRKAV 321
I+++ + AK E L Y KY E R E +R++ + +L + +
Sbjct: 143 IVEQGMISNLIEAKPEELRVYIEEAAGISKYKERRRETESRMRHTQENLDRVNDIAEELA 202
Query: 322 NFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQ---MEQELTANLESIKKCTDEME 378
+L + ++R+ N +Y+ Y + + KV Q ++ +L+ + ++I + E
Sbjct: 203 K--QLRH-LKRQANAAERYKAYKQEERALGAQFKVLQWKALDHKLSEHDQAINQKNTRRE 259
Query: 379 SAKTELKTVE 388
++E +E
Sbjct: 260 EKQSEQHRIE 269
>TIGR_CMR|CBU_0540 [details] [associations]
symbol:CBU_0540 "SMC family protein" species:227377
"Coxiella burnetii RSA 493" [GO:0000910 "cytokinesis" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR024704
HAMAP:MF_01894 InterPro:IPR010935 InterPro:IPR011890 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0003677
GO:GO:0006281 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006310
GO:GO:0030261 GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553
KO:K03529 TIGRFAMs:TIGR02168 EMBL:AJ543641 RefSeq:NP_819572.1
HSSP:Q9X0R4 ProteinModelPortal:Q81ZL2 PRIDE:Q81ZL2 GeneID:1208425
KEGG:cbu:CBU_0540 PATRIC:17929777 HOGENOM:HOG000036391 OMA:WARISKL
ProtClustDB:CLSK914134 BioCyc:CBUR227377:GJ7S-543-MONOMER
Uniprot:Q81ZL2
Length = 1169
Score = 153 (58.9 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 64/250 (25%), Positives = 117/250 (46%)
Query: 159 NAIIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLS-VLMHKSDQVGGVSRCSVAIHFAQ 216
NAI+GPNG GKSNV+D++ +V G ++K +R +S V+ + + V + S+ +HF
Sbjct: 27 NAIVGPNGCGKSNVVDAVRWVIGETSAKQLRGQSMSDVIFNGTTSRKPVGKASIELHFDN 86
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
+ EY G ++ I R D S Y +NG V ++V V G L +
Sbjct: 87 SEGRIGGEYAKY-G-EIAIRREVERDGQSNYFINGAHVRRRDVVDVFL--GTGLGPRSYA 142
Query: 277 ILQEPI------AKMEVL--Y-------GKYDEERTEKLTRVQLVETDLKALEPELRKAV 321
I+++ + AK E L Y KY E R E +R++ + +L + +
Sbjct: 143 IVEQGMISNLIEAKPEELRVYIEEAAGISKYKERRRETESRMRHTQENLDRVNDIAEELA 202
Query: 322 NFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQ---MEQELTANLESIKKCTDEME 378
+L + ++R+ N +Y+ Y + + KV Q ++ +L+ + ++I + E
Sbjct: 203 K--QLRH-LKRQANAAERYKAYKQEERALGAQFKVLQWKALDHKLSEHDQAINQKNTRRE 259
Query: 379 SAKTELKTVE 388
++E +E
Sbjct: 260 EKQSEQHRIE 269
>TIGR_CMR|SO_2898 [details] [associations]
symbol:SO_2898 "SMC family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0005524 "ATP binding"
evidence=ISS] [GO:0007059 "chromosome segregation" evidence=ISS]
[GO:0030261 "chromosome condensation" evidence=ISS]
InterPro:IPR024704 HAMAP:MF_01894 InterPro:IPR011890
PIRSF:PIRSF005719 InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524
GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006310 GO:GO:0030261
GO:GO:0007062 KO:K03529 TIGRFAMs:TIGR02168 HSSP:Q9X0R4
HOGENOM:HOG000036391 RefSeq:NP_718470.1 ProteinModelPortal:Q7ZAJ7
GeneID:1170588 KEGG:son:SO_2898 PATRIC:23525438 OMA:ELYVEEK
ProtClustDB:CLSK906922 Uniprot:Q7ZAJ7
Length = 1145
Score = 152 (58.6 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 63/249 (25%), Positives = 117/249 (46%)
Query: 159 NAIIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLS-VLMHKSDQVGGVSRCSVAIHFAQ 216
+AIIGPNG GKSNVID++ +V G ++K +R + +S V+ + S VS V + F
Sbjct: 27 SAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDSMSDVIFNGSSARKPVSVAGVELVFEN 86
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
+ +Y ++ + R D S+Y LNG+K K++ + G+ + +
Sbjct: 87 KEGRLAGQYASYE--EISVKRQVSRDGESWYFLNGQKCRRKDITDLFMGTGLGP-RSYAI 143
Query: 277 ILQEPIAKM------------EVLYG--KYDEERTEKLTRVQLVETDLKAL---EPELRK 319
I Q I+++ E G +Y E R E +R++ +L+ L EL K
Sbjct: 144 IEQGTISRLIESKPQDLRTFIEEAAGISRYKERRRETESRIRHTRENLERLGDIRSELGK 203
Query: 320 AVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMES 379
++ L + ++ E+ Q ER + + L + Q+++ ++ + E I + +
Sbjct: 204 QLDKLSQQAKAATQYRELKQAERKTHAELL---VMRFQELQSQMASLSEQINSLELQQAA 260
Query: 380 AKTELKTVE 388
A++ +T E
Sbjct: 261 AQSLAQTSE 269
>SGD|S000001886 [details] [associations]
symbol:SMC1 "Subunit of the multiprotein cohesin complex"
species:4932 "Saccharomyces cerevisiae" [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0007067 "mitosis"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0034990 "nuclear mitotic cohesin complex"
evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0007064 "mitotic sister chromatid cohesion"
evidence=IGI] [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0000217 "DNA secondary structure binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0003680 "AT DNA
binding" evidence=IDA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0030261 "chromosome condensation"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 SGD:S000001886
Pfam:PF02463 GO:GO:0005524 GO:GO:0051301 EMBL:D50617 EMBL:BK006940
GO:GO:0016887 GO:GO:0006310 GO:GO:0003690 GO:GO:0006302
GO:GO:0030261 GO:GO:0003680 GO:GO:0007064 eggNOG:COG1196
SUPFAM:SSF75553 PDB:1W1W PDBsum:1W1W GO:GO:0034990
HOGENOM:HOG000195481 KO:K06636 OMA:NALVCET
GeneTree:ENSGT00580000081569 OrthoDB:EOG42VCQD EMBL:L00602
PIR:A49464 RefSeq:NP_116647.1 ProteinModelPortal:P32908 SMR:P32908
DIP:DIP-2982N IntAct:P32908 MINT:MINT-434606 STRING:P32908
PaxDb:P32908 PeptideAtlas:P32908 EnsemblFungi:YFL008W GeneID:850540
KEGG:sce:YFL008W CYGD:YFL008w EvolutionaryTrace:P32908
NextBio:966301 Genevestigator:P32908 GermOnline:YFL008W
GO:GO:0000217 Uniprot:P32908
Length = 1225
Score = 152 (58.6 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 68/253 (26%), Positives = 123/253 (48%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKS----------DQVGGVSR 207
F +IIGPNGSGKSN++D++ FV G R++ +R+N L L+++ D G S
Sbjct: 28 FTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNILKDLIYRGVLNDENSDDYDNEGAASS 87
Query: 208 CSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHG 267
+ + K N+ E++ I+R D S Y ++GK V +K+ + L +
Sbjct: 88 NPQSAYVKAFYQKGNKLVELMR----IISRNG--DTS--YKIDGKTVSYKDYSIFLENEN 139
Query: 268 VDLLNNRFLILQ---EPIAKME-VLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNF 323
+ + FL+ Q E IA V + EE + + + E +LK +L K+
Sbjct: 140 ILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYE-ELKEKIEKLSKSATE 198
Query: 324 LELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQME--QELTA-----NLESIKK-CTD 375
++N +R H E+ Y+ +N KN E+ ++ + Q+ A +LE K+ TD
Sbjct: 199 -SIKNR-RRIHGELKTYKEGIN-KN-EEYRKQLDKKNELQKFQALWQLYHLEQQKEELTD 254
Query: 376 EMESAKTELKTVE 388
++ + +E+ +++
Sbjct: 255 KLSALNSEISSLK 267
>FB|FBgn0027783 [details] [associations]
symbol:SMC2 "SMC2" species:7227 "Drosophila melanogaster"
[GO:0007062 "sister chromatid cohesion" evidence=ISS] [GO:0008278
"cohesin complex" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0000796 "condensin complex" evidence=ISS;NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0007076 "mitotic chromosome condensation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR024704 InterPro:IPR010935
InterPro:IPR027120 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 EMBL:AE013599 GO:GO:0005524
GO:GO:0005634 GO:GO:0005875 GO:GO:0007052 GO:GO:0022008
GO:GO:0006281 GO:GO:0006310 GO:GO:0007076 GO:GO:0000796
GO:GO:0007062 SUPFAM:SSF75553 GeneTree:ENSGT00550000074857
KO:K06674 PANTHER:PTHR18937:SF9 OMA:CQNGKIP CTD:10592 HSSP:Q9X0R4
EMBL:AF179287 RefSeq:NP_610995.1 UniGene:Dm.2168 SMR:Q7KK96
STRING:Q7KK96 EnsemblMetazoa:FBtr0087461 GeneID:36653
KEGG:dme:Dmel_CG10212 UCSC:CG10212-RA FlyBase:FBgn0027783
InParanoid:Q7KK96 OrthoDB:EOG4P5HR3 GenomeRNAi:36653 NextBio:799708
Uniprot:Q7KK96
Length = 1179
Score = 151 (58.2 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 58/211 (27%), Positives = 100/211 (47%)
Query: 146 GKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGY-RASKIRANKLSVLMHKSDQVGG 204
G+ I+ F AI G NGSGKSN++DS+ FV G +RA+ L L++K+ Q G
Sbjct: 15 GRRTEIEGFDPEFTAITGLNGSGKSNILDSICFVLGISNLQNVRASALQDLVYKNGQAG- 73
Query: 205 VSRCSVAIHFAQIIDKPNEE-YEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVL 263
+++ +V I F + YE ++ + R + + +NGK V K+V
Sbjct: 74 ITKATVTIVFDNTNPAQCPQGYEKC--REISVTRQVVVGGKNKFLINGKLVQNKKVQDFF 131
Query: 264 RDHGVDLLNNRFLILQEPIAKM------EVLYGKYDEERTEKL-TRVQLVETDLKALEPE 316
+++ N FLI+Q I ++ EVL + T + T+ +T ++ E +
Sbjct: 132 CSIQLNVNNPNFLIMQGKIQQVLNMKPKEVLSMVEEAAGTSQYKTKRDATKTLIEKKETK 191
Query: 317 LRKAVNFLE---LENCVQ-RKHNEIYQ-YER 342
+R+ L+ L V+ R+ YQ Y++
Sbjct: 192 VRETKVLLDEEVLPKLVKLRQERSAYQEYQK 222
>CGD|CAL0001080 [details] [associations]
symbol:SMC1 species:5476 "Candida albicans" [GO:0034990
"nuclear mitotic cohesin complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0007064 "mitotic
sister chromatid cohesion" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0003680 "AT DNA
binding" evidence=IEA] [GO:0000217 "DNA secondary structure
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 CGD:CAL0001080
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
EMBL:AACQ01000091 EMBL:AACQ01000090 eggNOG:COG1196 SUPFAM:SSF75553
KO:K06636 RefSeq:XP_715092.1 RefSeq:XP_715143.1
ProteinModelPortal:Q5A021 SMR:Q5A021 STRING:Q5A021 GeneID:3643221
GeneID:3643229 KEGG:cal:CaO19.11845 KEGG:cal:CaO19.4367
Uniprot:Q5A021
Length = 1240
Score = 150 (57.9 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 55/230 (23%), Positives = 101/230 (43%)
Query: 146 GKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQ-VGG 204
GKS +I F +IIGPNG+GKSN++D++ FV G + +R+ L L+++ + +
Sbjct: 17 GKS-IIGFGSSYFTSIIGPNGAGKSNMMDAISFVLGVNSYHLRSQNLKDLIYRGRRNIDT 75
Query: 205 VSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLR 264
S AI YE G L++ RT +S Y +NG+ V + VL+
Sbjct: 76 DSTTLDAIEQDPTSAYVMATYEKDDGEILKLKRTITASGNSDYQINGQSVTMLNYSMVLK 135
Query: 265 DHGVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFL 324
+ + FL+ Q + + + + LT+ L+ET + + +
Sbjct: 136 QENILIKARNFLVFQGDVETIA-------SQNPKDLTK--LIET-ISGSNEYINEYERLK 185
Query: 325 ELENCVQRKHNEIYQYERYVNM--KNLGEHETKVQQMEQELTANLESIKK 372
E ++ +R +N K E + +Q E+++ +++KK
Sbjct: 186 EEHEKAHELTTSVFSRKRTLNSESKQYKEQMAEQRQFEEKIITKNDTVKK 235
>UNIPROTKB|Q9X0R4 [details] [associations]
symbol:smc "Chromosome partition protein Smc"
species:243274 "Thermotoga maritima MSB8" [GO:0042802 "identical
protein binding" evidence=IPI] InterPro:IPR024704 HAMAP:MF_01894
InterPro:IPR010935 InterPro:IPR011890 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0006310 GO:GO:0030261
EMBL:AE000512 GenomeReviews:AE000512_GR GO:GO:0007062
SUPFAM:SSF75553 KO:K03529 TIGRFAMs:TIGR02168 EMBL:AGIJ01000001
PIR:A72287 RefSeq:NP_228987.1 PDB:1E69 PDB:1GXJ PDB:1GXK PDB:1GXL
PDBsum:1E69 PDBsum:1GXJ PDBsum:1GXK PDBsum:1GXL SMR:Q9X0R4
GeneID:898303 KEGG:tma:TM1182 PATRIC:23937304 OMA:NNEVHAL
ProtClustDB:CLSK875623 EvolutionaryTrace:Q9X0R4 Uniprot:Q9X0R4
Length = 1170
Score = 124 (48.7 bits), Expect = 8.6e-07, Sum P(3) = 8.6e-07
Identities = 38/105 (36%), Positives = 59/105 (56%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASK-IRAN-KLSVLMHKSDQVGGVSRCSVAIHF 214
R AI+GPNGSGKSN+ID++ +VFG ++ K +RA+ K ++ S+ + V + F
Sbjct: 25 RVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVF 84
Query: 215 AQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEV 259
+ N E EI +L+ RT ++YY LNG V K++
Sbjct: 85 EE-----NGE-EITVARELK--RTG---ENTYY-LNGSPVRLKDI 117
Score = 69 (29.3 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 36/146 (24%), Positives = 65/146 (44%)
Query: 245 SYYTLNGKKVH-FKEVAKVLRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRV 303
S Y L K+ FKE L + N +L+ K+E Y + +++ EK+ +
Sbjct: 197 SLY-LKAKRAERFKEYTAQLEELQKIYYGN---VLKRERKKLE-FYQEEEKKTNEKIKNI 251
Query: 304 Q--LVETDLK--ALEPEL----RKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETK 355
Q LVE + K L E ++ + +L +++ N++ + + + + K L + E K
Sbjct: 252 QKELVELETKWSTLRSEFGEMDQEIERYTKLLEDYKKRQNDLVEMKGFYSSK-LADSENK 310
Query: 356 VQQME---QELTANLESIKKCTDEME 378
++ EL E KK +EME
Sbjct: 311 YVELSTRLDELEKRREEYKKRLEEME 336
Score = 62 (26.9 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 22/108 (20%), Positives = 50/108 (46%)
Query: 291 KYDEERTEKLTRVQLVETDLKALEPELRKAVN-FLELENCVQR---------KHNEIYQY 340
K+++E+ L+R E + + E+ K L+LEN + R K +I +
Sbjct: 355 KFEKEKENLLSRFNDKEKEFLRVRDEISKLEKQILKLENELLRIGETLEDLEKRRKITEN 414
Query: 341 ERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
+ + L + + + +++ + + E KK T+E+ + + L+ +E
Sbjct: 415 QILTRRRELEDKKNEFKEISRRVEELDEEEKKLTEELNAVRERLEEIE 462
Score = 60 (26.2 bits), Expect = 8.6e-07, Sum P(3) = 8.6e-07
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 348 NLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
N+ E K++ +EQE+ I + DE+ S KTE + ++
Sbjct: 663 NVFERRIKLKHLEQEMEETERQIAEKRDELASLKTEQENLK 703
Score = 59 (25.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 26/129 (20%), Positives = 60/129 (46%)
Query: 268 VDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLV--ET-DLK----ALEPELRKA 320
+D LN + L+ + + +Y++E + ++ + ET D+K +LE E+
Sbjct: 797 LDELNEKIFTLRAEVGNLLETKDRYEKEMRDTGKMIERIARETEDIKLQMTSLEEEMENY 856
Query: 321 VNFL-ELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMES 379
F+ E E ++ E+ + + G+ E K++++ QE+ ++ +K +E E
Sbjct: 857 RKFIREHEREIEHLKKEMDSVFEAMKLHRSGKEE-KMREL-QEVENRMDELK---EEKER 911
Query: 380 AKTELKTVE 388
+ L ++
Sbjct: 912 LRNHLHQID 920
Score = 53 (23.7 bits), Expect = 8.6e-07, Sum P(3) = 8.6e-07
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 293 DEERTEKLTR-VQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGE 351
DEE +KLT + V L+ +E E+R+ VN LE++ +++ EI Q+E+ + +++ E
Sbjct: 441 DEEE-KKLTEELNAVRERLEEIEGEIRR-VN-LEID-AKEKRLREI-QFEKEMIERDMRE 495
Query: 352 H 352
+
Sbjct: 496 Y 496
Score = 48 (22.0 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 25/104 (24%), Positives = 44/104 (42%)
Query: 279 QEPIAKMEVLYGK--YDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNE 336
QE + E L + ++ R T+ L E L+++ +L++ V LE R E
Sbjct: 699 QENLKNQEALVQRELFELSRKSSSTKTVLSEI-LRSIN-QLQEEVENLEKLLVEYRAKEE 756
Query: 337 IYQYER---YVNMKNLGEHETKVQQMEQELTANLESIKKCTDEM 377
R + + L ++ +Q+ E + LE KK DE+
Sbjct: 757 GLNARREKIFEEIDELKQNRENLQRSLTEYSEELEKEKKILDEL 800
Score = 47 (21.6 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 10/49 (20%), Positives = 26/49 (53%)
Query: 340 YERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
+ER + +K+L E ++++ E+++ + + E E+ K + V+
Sbjct: 665 FERRIKLKHL---EQEMEETERQIAEKRDELASLKTEQENLKNQEALVQ 710
Score = 46 (21.3 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 18/85 (21%), Positives = 41/85 (48%)
Query: 296 RTEKLTRVQLVETDLKALEPELRKAVNFL-ELENCVQRKHNEIYQYERYVNMKNLGEHET 354
+ EK+ +Q VE + L+ E + N L +++ +Q +I ++ +E
Sbjct: 888 KEEKMRELQEVENRMDELKEEKERLRNHLHQIDLALQETRLKIANL-----LEEFSGNEE 942
Query: 355 KVQQMEQELTANLESIKKCTDEMES 379
V+++++E LE I + ++E+
Sbjct: 943 DVEELDEE---KLEEIYRQIKDLEN 964
Score = 43 (20.2 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 30/148 (20%), Positives = 64/148 (43%)
Query: 243 NSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTR 302
N+ TL+G+ + + R+ + R + L+ +ME + E+R E L
Sbjct: 636 NTRIATLDGELISGRGAITGGREERSSNVFERRIKLKHLEQEMEETERQIAEKRDE-LAS 694
Query: 303 VQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVN-----MKNLGEHETKVQ 357
++ + +LK E +++ + EL + + R +N ++NL + + +
Sbjct: 695 LKTEQENLKNQEALVQREL--FELSRKSSSTKTVLSEILRSINQLQEEVENLEKLLVEYR 752
Query: 358 QMEQELTANLESIKKCTDEMESAKTELK 385
E+ L A E I + DE++ + L+
Sbjct: 753 AKEEGLNARREKIFEEIDELKQNRENLQ 780
Score = 42 (19.8 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 20/95 (21%), Positives = 47/95 (49%)
Query: 295 ERTEKLTRVQLVETDLKALEPELRKAV-NFLELENCVQRKHNEIYQY-ERYVNMKNLGEH 352
E +E+L + + + +L LR V N LE ++ +++ + + ER + +
Sbjct: 785 EYSEELEKEKKILDELNEKIFTLRAEVGNLLETKDRYEKEMRDTGKMIERIA--RETEDI 842
Query: 353 ETKVQQMEQELTANLESIKKCTDEMESAKTELKTV 387
+ ++ +E+E+ + I++ E+E K E+ +V
Sbjct: 843 KLQMTSLEEEMENYRKFIREHEREIEHLKKEMDSV 877
>WB|WBGene00004873 [details] [associations]
symbol:smc-3 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040002 "collagen and cuticulin-based cuticle
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0030261 "chromosome condensation"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IMP]
[GO:0007109 "cytokinesis, completion of separation" evidence=IMP]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0005819 "spindle"
evidence=IDA] [GO:0008278 "cohesin complex" evidence=IDA;IPI]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0004674 "protein
serine/threonine kinase activity" evidence=NAS] InterPro:IPR010935
Pfam:PF06470 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040010 GO:GO:0007059 GO:GO:0005819
GO:GO:0004674 GO:GO:0040011 GO:GO:0000790 GO:GO:0040035
GO:GO:0000794 GO:GO:0030261 GO:GO:0007109 GO:GO:0040002
GO:GO:0008278 EMBL:AL117202 eggNOG:COG1196 SUPFAM:SSF75553
HOGENOM:HOG000166512 KO:K06669 OMA:NKVLEHF
GeneTree:ENSGT00580000081628 RefSeq:NP_001129842.1
ProteinModelPortal:B2FDA8 SMR:B2FDA8 STRING:B2FDA8 PaxDb:B2FDA8
EnsemblMetazoa:Y47D3A.26b.1 EnsemblMetazoa:Y47D3A.26b.2
GeneID:176559 KEGG:cel:CELE_Y47D3A.26 CTD:176559
WormBase:Y47D3A.26b InParanoid:B2FDA8 NextBio:893080
ArrayExpress:B2FDA8 Uniprot:B2FDA8
Length = 1261
Score = 125 (49.1 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 58/236 (24%), Positives = 105/236 (44%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
R N ++G NGSGKSN ++ FV + ++ + L+H+S V+ V I F
Sbjct: 26 RSNVVVGRNGSGKSNFFHAIQFVLSDEYAHLKEEQRLGLLHESTGPK-VAHARVEITF-- 82
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
D + ++++I R YY ++ K V EV ++ G N ++
Sbjct: 83 --DNSEKRLMAFENSEVKIVRQVGKKKDQYY-IDNKMVPRAEVVNLMESAGFSRSNPYYI 139
Query: 277 ILQEPIAKMEVLYGKYDEERTEKL--TRV--QLVETDLKAL-EPELR--KAVNFLE-LEN 328
+ Q I ++ Y + ++ TRV + E LK L E +++ K L+ ++
Sbjct: 140 VKQGKINELATSPDAYKLKLLREVAGTRVYDERKEESLKILKETKMKTEKIQGLLKYIDE 199
Query: 329 CVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTEL 384
+Q NE + Y + L + + V+ + T N E+IK+ T +++ K EL
Sbjct: 200 RLQTLENEKEDLKEY---QKLDKTKRSVEYTMYDNT-NKEAIKEKT-KLDEQKVEL 250
Score = 66 (28.3 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 111 KGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLF 156
K K + TG Y + + R N ++G NGSGKSN ++ F
Sbjct: 2 KIKEVRITGFRSYKDNTNVSGFSPRSNVVVGRNGSGKSNFFHAIQF 47
>TIGR_CMR|GSU_1130 [details] [associations]
symbol:GSU_1130 "chromosome segregation SMC protein,
putative" species:243231 "Geobacter sulfurreducens PCA" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
InterPro:IPR024704 HAMAP:MF_01894 InterPro:IPR010935
InterPro:IPR011890 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GenomeReviews:AE017180_GR GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
SUPFAM:SSF75553 HOGENOM:HOG000036392 TIGRFAMs:TIGR02168 HSSP:Q9X0R4
EMBL:AJ543647 ProteinModelPortal:Q84EX7 PATRIC:22025022
ProtClustDB:CLSK924468 Uniprot:Q84EX7
Length = 1175
Score = 129 (50.5 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 39/157 (24%), Positives = 77/157 (49%)
Query: 146 GKSNVIDSMLFRFN----AIIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLS-VLMHKS 199
G + +D + F F I+GPNG GKSNV+D++ + G +++K +R + ++ S
Sbjct: 10 GFKSFVDKVSFDFQQGITGIVGPNGCGKSNVVDAIRWAMGEQSAKNLRGRSMEDIIFGGS 69
Query: 200 DQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEV 259
+ + V++ FA + +Y + ++++I R + D S Y LN ++
Sbjct: 70 EFRKPLGMAEVSMVFATDDGRVPAKY--LSYSEIQITRRLYRDGESEYFLNKTPCRLMDI 127
Query: 260 AKVLRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEER 296
++ D GV + I+++ M +L+ K +E R
Sbjct: 128 TELFMDTGVGA--RAYSIIEQGKIGM-ILHSKPEERR 161
Score = 60 (26.2 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 29/117 (24%), Positives = 54/117 (46%)
Query: 278 LQEPIAKMEVLYGKYDEERTE-----KLTRVQLVETDLKALEPELRKAVNFLE-LENCVQ 331
LQ + K E + +Y EE E + R ++ + + +E LR+AV+ L ++
Sbjct: 208 LQRQVKKAE-RFREYREELREIEIHASVRRFTALDAEKERIEGLLREAVSRESTLTADLE 266
Query: 332 RKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
R+ E+ ++ R L E E +V ++ L I+ C +E + EL ++E
Sbjct: 267 RRDLELAEH-RLA----LAEREKEVVTAQEGLFRQKADIQACESRIEFQRRELSSLE 318
Score = 41 (19.5 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 347 KNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELK 385
+N G+ ++ +EL+ +E ++ E E+ + EL+
Sbjct: 661 ENAGQGLVHKKREIRELSGTVERLESAVRETETRREELR 699
>UNIPROTKB|F1N6C8 [details] [associations]
symbol:SMC1B "Structural maintenance of chromosomes
protein" species:9913 "Bos taurus" [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000800 "lateral element"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0007126 GO:GO:0000775 GO:GO:0003677
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0000800
GO:GO:0007062 SUPFAM:SSF75553 GO:GO:0030893
GeneTree:ENSGT00580000081569 OMA:QLYHNEK EMBL:DAAA02014929
EMBL:DAAA02014930 IPI:IPI00697785 ProteinModelPortal:F1N6C8
PRIDE:F1N6C8 Ensembl:ENSBTAT00000014005 Uniprot:F1N6C8
Length = 1235
Score = 143 (55.4 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 63/227 (27%), Positives = 104/227 (45%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF IIGPNGSGKSNV+D++ FV G + + +R + L+H + +G S ++
Sbjct: 26 RFTCIIGPNGSGKSNVMDALSFVMGEKIANLRVKNIQELIHGA-HIGKPVSSSASVKIVY 84
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
+ EE G + ART S Y+ N + L G+ + L
Sbjct: 85 L-----EE----SGEEKTFART-IRGGCSEYSFNDNPMSRSAYITELEKIGIIVKARNCL 134
Query: 277 ILQEPIAKMEVLYGKYDEERT---EKL-TRVQLV----ETDLKALEPELRKAVNFLELEN 328
+ Q + + + K +ERT E++ T +L+ E K + E NF + +N
Sbjct: 135 VFQGTVESISM---KKPKERTQFFEEISTSGELIGEYEEKKRKLHKAEEDAQFNFNKKKN 191
Query: 329 -CVQRKHNEIYQYE--RYVNMKNLGEHETKVQQMEQELTANLESIKK 372
+RKH ++ + E RY +NL E E K+ +++ +L + KK
Sbjct: 192 VAAERKHAKLEKEEADRY---QNLLE-ELKINKIQLQLFRLYHNEKK 234
Score = 45 (20.9 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 84 NFKSYAGYVTLGPF 97
NFKS+ G +GPF
Sbjct: 11 NFKSWRGRQVIGPF 24
>UNIPROTKB|F1SM58 [details] [associations]
symbol:F1SM58 "Structural maintenance of chromosomes
protein" species:9823 "Sus scrofa" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030893 "meiotic cohesin complex" evidence=IEA]
[GO:0030261 "chromosome condensation" evidence=IEA] [GO:0007062
"sister chromatid cohesion" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
InterPro:IPR024704 PIRSF:PIRSF005719 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005634 GO:GO:0006281 GO:GO:0006310
GO:GO:0030261 GO:GO:0007062 GeneTree:ENSGT00580000081569
EMBL:CU856016 EMBL:CU633534 Ensembl:ENSSSCT00000000014
Uniprot:F1SM58
Length = 1233
Score = 133 (51.9 bits), Expect = 8.2e-06, Sum P(3) = 8.2e-06
Identities = 55/197 (27%), Positives = 94/197 (47%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
RF IIGPNGSGKSNV+D++ FV G + + +R + L+H + +G S ++
Sbjct: 26 RFTCIIGPNGSGKSNVMDALSFVMGEKIANLRVKNIQELIHGA-HIGKPVSSSASVRIVY 84
Query: 217 IIDKPNEEY--EIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNR 274
+ + E+ II G E F DN + + KE+ K+ G+ +
Sbjct: 85 VEESGEEKTFTRIIRGGCSEFH---FDDNPV-----SRSSYIKELEKI----GIIVKARN 132
Query: 275 FLILQEPIAKMEVLYGKYDEERT---EKL-TRVQLVETDLKALEPELRKA-----VNFLE 325
L+ Q + + + K +ERT E++ T +LV + + + L+KA NF +
Sbjct: 133 CLVFQGTVESISL---KKPKERTQFFEEISTSGELVR-EYEEKKRRLQKAEEDAQFNFNK 188
Query: 326 LEN-CVQRKHNEIYQYE 341
+N +RKH ++ + E
Sbjct: 189 KKNIAAERKHAKLEKEE 205
Score = 49 (22.3 bits), Expect = 8.2e-06, Sum P(3) = 8.2e-06
Identities = 9/55 (16%), Positives = 31/55 (56%)
Query: 329 CVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTE 383
C + + + + ++ Y N + + T+++++ ++L+ ES+ + + +++ K E
Sbjct: 216 CTENRISLLQLFQLYHNERKIHFLNTELKRVNEDLSVTKESLSRHENIVKAKKKE 270
Score = 45 (20.9 bits), Expect = 8.2e-06, Sum P(3) = 8.2e-06
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 84 NFKSYAGYVTLGPF 97
NFKS+ G +GPF
Sbjct: 11 NFKSWRGRQVIGPF 24
Score = 43 (20.2 bits), Expect = 3.2e-05, Sum P(3) = 3.2e-05
Identities = 10/44 (22%), Positives = 23/44 (52%)
Query: 342 RYVNMK-NLGEHETKVQQMEQELTANLESIKKCTDEMESAKTEL 384
+Y+ K N H K+ ++ + + + K D++++ +TEL
Sbjct: 298 QYIKAKENTSHHLKKLDVAKKSIKDSEKQCSKQEDDIKALETEL 341
>TAIR|locus:2045159 [details] [associations]
symbol:TTN7 "AT2G27170" species:3702 "Arabidopsis
thaliana" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS;IDA] [GO:0007059 "chromosome
segregation" evidence=ISS;IMP] [GO:0008278 "cohesin complex"
evidence=ISS] [GO:0000785 "chromatin" evidence=IDA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0016363
"nuclear matrix" evidence=IDA] [GO:0007062 "sister chromatid
cohesion" evidence=IMP] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0051607 "defense response to
virus" evidence=RCA] InterPro:IPR010935 Pfam:PF06470 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0009506 GO:GO:0005524
GO:GO:0005737 EMBL:CP002685 GO:GO:0005819 GO:GO:0000785
GO:GO:0003682 HSSP:P01096 GO:GO:0016363 EMBL:AC007154 EMBL:AC007290
GO:GO:0008278 GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553
PROSITE:PS51131 EMBL:AJ504805 EMBL:AY525642 EMBL:AK220965
EMBL:AK221283 EMBL:AK226305 EMBL:AK229499 IPI:IPI00549149
PIR:F84669 RefSeq:NP_001077968.1 RefSeq:NP_180285.4
UniGene:At.28786 ProteinModelPortal:Q56YN8 SMR:Q56YN8 STRING:Q56YN8
PRIDE:Q56YN8 EnsemblPlants:AT2G27170.1 EnsemblPlants:AT2G27170.2
GeneID:817259 KEGG:ath:AT2G27170 TAIR:At2g27170
HOGENOM:HOG000166512 InParanoid:Q56YN8 KO:K06669 OMA:NKVLEHF
PhylomeDB:Q56YN8 ProtClustDB:CLSN2692426 Genevestigator:Q56YN8
Uniprot:Q56YN8
Length = 1204
Score = 136 (52.9 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 54/235 (22%), Positives = 103/235 (43%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
+ N ++G NGSGKSN ++ FV +R+ L+H+ G V F +
Sbjct: 26 KVNCVVGANGSGKSNFFHAIRFVLSDIYQNLRSEDRHALLHE-----GAGH-QVVSAFVE 79
Query: 217 II-DKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRF 275
I+ D + + + ++ + RT Y+ L+GK + EV +L G N +
Sbjct: 80 IVFDNSDNRFPV-DKEEIRLRRTVGLKKDDYF-LDGKHITKGEVMNLLESAGFSRANPYY 137
Query: 276 LILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHN 335
++ Q IA + ++ D ER + L + + E R+++ ++ +++
Sbjct: 138 VVQQGKIASLTLMK---DIERLDLLKEIG----GTRVYEERRRESLRIMQETGNKRKQII 190
Query: 336 EIYQY--ERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
E+ Y ER + E K QQ++++ +LE E+ A+ +L+ VE
Sbjct: 191 EVVHYLDERLRELDEEKEELRKYQQLDKQ-RKSLE-YTIYDKELHDAREKLEQVE 243
>SGD|S000003610 [details] [associations]
symbol:SMC3 "Subunit of the multiprotein cohesin complex"
species:4932 "Saccharomyces cerevisiae" [GO:0007130 "synaptonemal
complex assembly" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0030437 "ascospore formation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0051301 "cell division" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0051177 "meiotic sister chromatid
cohesion" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0051276 "chromosome organization"
evidence=IEA] [GO:0007064 "mitotic sister chromatid cohesion"
evidence=IGI] [GO:0034990 "nuclear mitotic cohesin complex"
evidence=IDA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] InterPro:IPR010935 Pfam:PF06470
SMART:SM00968 InterPro:IPR003395 SGD:S000003610 Pfam:PF02463
GO:GO:0005524 GO:GO:0051301 EMBL:BK006943 GO:GO:0016887 EMBL:X88851
GO:GO:0030437 GO:GO:0007131 GO:GO:0007130 GO:GO:0007064
eggNOG:COG1196 SUPFAM:SSF75553 GO:GO:0051177 GO:GO:0034990
HOGENOM:HOG000166512 KO:K06669 GeneTree:ENSGT00580000081628
OrthoDB:EOG4TB7KF EMBL:Y14278 EMBL:Z49349 PIR:S56850
RefSeq:NP_012461.1 ProteinModelPortal:P47037 SMR:P47037
DIP:DIP-2991N IntAct:P47037 MINT:MINT-435389 STRING:P47037
PaxDb:P47037 PeptideAtlas:P47037 EnsemblFungi:YJL074C GeneID:853371
KEGG:sce:YJL074C CYGD:YJL074c OMA:NIRMENI NextBio:973810
Genevestigator:P47037 GermOnline:YJL074C Uniprot:P47037
Length = 1230
Score = 134 (52.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 65/226 (28%), Positives = 104/226 (46%)
Query: 150 VIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCS 209
+ID+ N IIG NGSGKSN ++ FV S ++ + L+H+ G V S
Sbjct: 19 IIDNFSPHQNVIIGSNGSGKSNFFAAIRFVLSDDYSNLKREERQGLIHQGSG-GSVMSAS 77
Query: 210 VAIHFAQIIDKPNEEYEIIP------GTD-LEIARTAFYDNSSYYTLNGKKVHFKEVAKV 262
V I F P+ I+P G D + I RT Y LN + V ++ ++
Sbjct: 78 VEIVFHD----PDHSM-ILPSGVLSRGDDEVTIRRTVGLKKDDYQ-LNDRNVTKGDIVRM 131
Query: 263 LRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVN 322
L G + NN + I+ P K+ L D+ER +QL+E + A E++ +
Sbjct: 132 LETAGFSM-NNPYNIV--PQGKIVALTNAKDKER------LQLLEDVVGAKSFEVKLKAS 182
Query: 323 FLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQ--ELTAN 366
++E Q+K +I + +N K L E E + +++E+ EL N
Sbjct: 183 LKKMEETEQKKI-QINKEMGELNSK-LSEMEQERKELEKYNELERN 226
>UNIPROTKB|Q71YL3 [details] [associations]
symbol:smC "Chromosome partition protein Smc"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR024704
HAMAP:MF_01894 InterPro:IPR010935 InterPro:IPR011890 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0006310 EMBL:AE017262
GenomeReviews:AE017262_GR GO:GO:0030261 GO:GO:0007062
eggNOG:COG1196 SUPFAM:SSF75553 HOGENOM:HOG000036392 KO:K03529
TIGRFAMs:TIGR02168 OMA:GDITKFI RefSeq:YP_014424.1
ProteinModelPortal:Q71YL3 STRING:Q71YL3 GeneID:2797604
KEGG:lmf:LMOf2365_1831 PATRIC:20324957 ProtClustDB:CLSK2518461
Uniprot:Q71YL3
Length = 1186
Score = 133 (51.9 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 55/242 (22%), Positives = 115/242 (47%)
Query: 160 AIIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLSVLMHKSDQVGGVSRCSVAIHFAQI- 217
A++GPNGSGKSN+ +++ +V G +++K +R ++ D + S I+FA++
Sbjct: 28 AVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGRMG------DVIFAGSDTRKPINFAEVS 81
Query: 218 IDKPNEEYEI-IPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
+ NE++ + + +++ + R + + S + +N + K++ + D G+ F
Sbjct: 82 LILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCRLKDIVDLFMDSGLG--RESFS 139
Query: 277 ILQEPIAKM-EVLYGKYDEERT--EKLT-------RVQLVETDLKALEPELRKAVNFL-E 325
I+ + K+ E+L K +E R+ E+ R + E L E L + + L E
Sbjct: 140 IISQ--GKIDEILNSKPEERRSIFEEAAGVLKYKHRKKQAENKLFETEENLNRVQDILYE 197
Query: 326 LENCVQRKHNEIYQYERYV-NMKNLGEHETKVQQME-QELTANLESIKKCTDEMESAKTE 383
LE ++ + + Y+ + L ++E + E LT L ++K E ++ +
Sbjct: 198 LEGQLEPLEMQASIAKDYLFQQEELEKYEVTLLASEISSLTEKLAEVRKEFGENQTVLIK 257
Query: 384 LK 385
L+
Sbjct: 258 LR 259
>TIGR_CMR|BA_3986 [details] [associations]
symbol:BA_3986 "chromosome segregation SMC protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0007059 "chromosome segregation"
evidence=ISS] InterPro:IPR024704 HAMAP:MF_01894 InterPro:IPR010935
InterPro:IPR011890 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0006310 GO:GO:0030261 GO:GO:0007062 SUPFAM:SSF75553
OMA:CQNGKIP HOGENOM:HOG000036392 KO:K03529 TIGRFAMs:TIGR02168
HSSP:Q9X0R4 RefSeq:NP_846228.1 RefSeq:YP_020625.1
RefSeq:YP_029950.1 ProteinModelPortal:Q81WI9 IntAct:Q81WI9
DNASU:1086762 EnsemblBacteria:EBBACT00000012710
EnsemblBacteria:EBBACT00000015269 EnsemblBacteria:EBBACT00000024406
GeneID:1086762 GeneID:2817444 GeneID:2848221 KEGG:ban:BA_3986
KEGG:bar:GBAA_3986 KEGG:bat:BAS3699 ProtClustDB:CLSK873325
BioCyc:BANT260799:GJAJ-3757-MONOMER
BioCyc:BANT261594:GJ7F-3874-MONOMER Uniprot:Q81WI9
Length = 1189
Score = 131 (51.2 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 50/231 (21%), Positives = 113/231 (48%)
Query: 160 AIIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLSVLMHKSDQVGGVSRCSVAIHFAQI- 217
+++GPNGSGKSN+ D++ +V G +++K +R K+ ++ G +R A++ A++
Sbjct: 28 SVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAKMEDIIF----AGSDTRR--AVNVAEVT 81
Query: 218 IDKPNEEYEI-IPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
I NE+ + I ++ + R S + +N + K++ + D G+ F
Sbjct: 82 ITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCRLKDIIDLFMDSGMG--REAFS 139
Query: 277 ILQEPIAKMEVLYGKYDEERT--EKLTRVQLVETDLKALEPELRKAV-NFLELENCVQRK 333
I+ + + E+L K +E R E+ V + K E +L N +++ +
Sbjct: 140 IISQGKVE-EILSSKSEERRGVFEEAAGVLKYKLRKKKAESKLADTQENLNRVQDIIHEL 198
Query: 334 HNEIYQYERYVNM-KNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTE 383
+++ ER ++ K+ E + +++++E L + I++ ++ E+ + +
Sbjct: 199 SSQVEPLERQASIAKDYLEKKEELEKVEAALIVH--EIEELHEKWEALRNQ 247
>TAIR|locus:2146107 [details] [associations]
symbol:SMC5 "AT5G15920" species:3702 "Arabidopsis
thaliana" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0007059 "chromosome segregation"
evidence=ISS] [GO:0007062 "sister chromatid cohesion" evidence=IMP]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR027131 InterPro:IPR003395 Pfam:PF02463 GO:GO:0009506
EMBL:CP002688 EMBL:AL391145 GO:GO:0007062 PANTHER:PTHR19306:SF1
OMA:GMDPRNE IPI:IPI00520383 PIR:T51375 RefSeq:NP_197096.1
UniGene:At.31737 ProteinModelPortal:Q9LFS8 SMR:Q9LFS8 STRING:Q9LFS8
PRIDE:Q9LFS8 EnsemblPlants:AT5G15920.1 GeneID:831449
KEGG:ath:AT5G15920 TAIR:At5g15920 HOGENOM:HOG000006187
InParanoid:Q9LFS8 PhylomeDB:Q9LFS8 ProtClustDB:CLSN2686110
ArrayExpress:Q9LFS8 Genevestigator:Q9LFS8 Uniprot:Q9LFS8
Length = 1053
Score = 110 (43.8 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 62/244 (25%), Positives = 102/244 (41%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKI-RANKLSVLMHKSDQVGGVSRCSVAIHFA 215
R N +IGPNGSGKS+++ ++ G + RA + + + + G +
Sbjct: 44 RLNLVIGPNGSGKSSLVCAIALCLGGEPQLLGRATSVGAYVKRGEDSG----------YV 93
Query: 216 QIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRF 275
+I + N E +L I R N S + NG V K++ ++++ + + N
Sbjct: 94 KISLRGNTREE-----NLTIFRKIDTRNKSEWMFNGSTVSKKDIVEIIQKFNIQVNNLTQ 148
Query: 276 LILQEPIAKMEVLYGKYDEERTEKLT--------RVQLVET--DLKALEPELRKAVNFL- 324
+ Q+ + + L E TEK LVE DLK LE + K L
Sbjct: 149 FLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPVHHRALVEKSRDLKQLERAVAKNGETLN 208
Query: 325 ELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTEL 384
+L+ V + ++ ER V + L TKV M+++L +KK E AK +
Sbjct: 209 QLKALVDEQEKDV---ER-VRQREL--FLTKVDSMKKKLPWLKYDMKKA--EYMDAKKRM 260
Query: 385 KTVE 388
K E
Sbjct: 261 KEAE 264
Score = 66 (28.3 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 11/17 (64%), Positives = 15/17 (88%)
Query: 135 RFNAIIGPNGSGKSNVI 151
R N +IGPNGSGKS+++
Sbjct: 44 RLNLVIGPNGSGKSSLV 60
>POMBASE|SPAC10F6.09c [details] [associations]
symbol:psm3 "mitotic cohesin complex subunit Psm3"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000794 "condensed nuclear chromosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005694 "chromosome" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0007064 "mitotic sister chromatid
cohesion" evidence=IMP] [GO:0008278 "cohesin complex" evidence=IDA]
[GO:0016567 "protein ubiquitination" evidence=ISO] [GO:0016887
"ATPase activity" evidence=ISM] [GO:0030892 "mitotic cohesin
complex" evidence=NAS] [GO:0046982 "protein heterodimerization
activity" evidence=IPI] InterPro:IPR010935 Pfam:PF06470
SMART:SM00968 InterPro:IPR003395 PomBase:SPAC10F6.09c Pfam:PF02463
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GO:GO:0051301
GenomeReviews:CU329670_GR GO:GO:0016887 GO:GO:0016567 GO:GO:0000790
GO:GO:0000794 GO:GO:0007064 eggNOG:COG1196 SUPFAM:SSF75553
GO:GO:0030892 HOGENOM:HOG000166512 KO:K06669 OMA:NKVLEHF PIR:T37503
RefSeq:NP_593260.1 ProteinModelPortal:O42649 IntAct:O42649
STRING:O42649 EnsemblFungi:SPAC10F6.09c.1 GeneID:2543010
KEGG:spo:SPAC10F6.09c OrthoDB:EOG4TB7KF NextBio:20804043
Uniprot:O42649
Length = 1194
Score = 110 (43.8 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 48/196 (24%), Positives = 84/196 (42%)
Query: 150 VIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCS 209
VI+ + N I+G NGSGKSN ++ FV + + + L+H+ +S
Sbjct: 19 VIEPLSPHHNVIVGRNGSGKSNFFAAIRFVLSDAYTHLSREERQALLHEGPGATVMS-AY 77
Query: 210 VAIHFAQIIDK-PNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGV 268
V + FA ++ P + E++ + RT Y +L+ K V EV +L G
Sbjct: 78 VEVTFANADNRFPTGKSEVV------LRRTIGLKKDEY-SLDKKTVSKTEVINLLESAGF 130
Query: 269 DLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRV---QLVET----DLKALEPELRKAV 321
N +++ P ++ L D ER E L V Q+ E K ++ ++K+
Sbjct: 131 SRSNPYYIV---PQGRVTSLTNAKDSERLELLKEVAGTQIYENRRAESNKIMDETIQKSE 187
Query: 322 NFLELENCVQRKHNEI 337
EL ++ + E+
Sbjct: 188 KIDELLQYIEERLREL 203
Score = 54 (24.1 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 75 LIITKIVAFNFKSYAGYVTLGPFN 98
+ ITKIV FKSY Y + P +
Sbjct: 1 MYITKIVIQGFKSYKDYTVIEPLS 24
Score = 53 (23.7 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 338 YQYERYVNMKNLGEHETKVQQMEQELT---ANLES----IKKCTDEMESAKTELKTVE 388
Y+ R +KN+ ++ K +++ L + +ES I C D+++ A+ LK E
Sbjct: 662 YRNSRLDAIKNVKTYQIKFSDLQESLEKCRSEIESFDQKITACLDDLQKAQLSLKQFE 719
>TAIR|locus:2161163 [details] [associations]
symbol:MIM "AT5G61460" species:3702 "Arabidopsis
thaliana" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0007059 "chromosome segregation"
evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=RCA;IMP] [GO:0007062 "sister
chromatid cohesion" evidence=RCA;IMP] [GO:0010165 "response to
X-ray" evidence=IMP] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006275
"regulation of DNA replication" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016568 "chromatin modification" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0031048 "chromatin
silencing by small RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR027132 EMBL:CP002688 GenomeReviews:BA000015_GR
HSSP:P58301 GO:GO:0000724 GO:GO:0010165 GO:GO:0007062
eggNOG:COG1196 PANTHER:PTHR19306:SF2 OMA:CANEANY EMBL:AB016887
IPI:IPI00530052 RefSeq:NP_200954.1 UniGene:At.8630
ProteinModelPortal:Q9FII7 SMR:Q9FII7 STRING:Q9FII7 PaxDb:Q9FII7
PRIDE:Q9FII7 EnsemblPlants:AT5G61460.1 GeneID:836267
KEGG:ath:AT5G61460 TAIR:At5g61460 HOGENOM:HOG000030109
InParanoid:Q9FII7 PhylomeDB:Q9FII7 ProtClustDB:CLSN2686921
Genevestigator:Q9FII7 Uniprot:Q9FII7
Length = 1057
Score = 124 (48.7 bits), Expect = 0.00030, P = 0.00030
Identities = 56/217 (25%), Positives = 106/217 (48%)
Query: 159 NAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQII 218
N I G NGSGKS ++ ++ FG RA R + + + + G CS A+ ++
Sbjct: 45 NFITGQNGSGKSAILTALCVAFGCRA---RGTQRAATLKDFIKTG----CSYAVVQVEMK 97
Query: 219 DKPNEEY--EIIPGTDLEIARTAFYDNSSYYTLN---GKKVHFK--EVAKVLRDHGVDLL 271
+ + + EI G + I R ++++ L GKKV K E+ +++ +D+
Sbjct: 98 NSGEDAFKPEIYGGVII-IERR-ITESATATVLKDYLGKKVSNKRDELRELVEHFNIDVE 155
Query: 272 NNRFLILQEPIAKMEVLYGKYDEERTE---KLTRVQLVETDLKALEPELRKAVNFL-ELE 327
N ++ Q+ E L+ D+++ + K T +Q V L+++ L KA + ELE
Sbjct: 156 NPCVVMSQDK--SREFLHSGNDKDKFKFFFKATLLQQVNDLLQSIYEHLTKATAIVDELE 213
Query: 328 NCVQRKHNEIYQYERYV-NMKNLGEHETKVQQMEQEL 363
N ++ EI + + NM+ + E ++QQ++++L
Sbjct: 214 NTIKPIEKEISELRGKIKNMEQVEEIAQRLQQLKKKL 250
>ASPGD|ASPL0000036762 [details] [associations]
symbol:AN2963 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008278 "cohesin
complex" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0007064 "mitotic sister chromatid
cohesion" evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0006310
GO:GO:0030261 GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553
HOGENOM:HOG000195481 KO:K06636 OMA:NALVCET OrthoDB:EOG42VCQD
RefSeq:XP_660567.1 ProteinModelPortal:Q5B917 SMR:Q5B917
STRING:Q5B917 EnsemblFungi:CADANIAT00010118 GeneID:2874104
KEGG:ani:AN2963.2 Uniprot:Q5B917
Length = 1261
Score = 122 (48.0 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 59/245 (24%), Positives = 106/245 (43%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQI 217
F +IIGPNGSGKSN +D++ FV G ++S +R+ L L+++ G V R S
Sbjct: 28 FTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTNLRDLIYR----GRVLRTSKVDADGNA 83
Query: 218 IDKPNE-------EYEIIPGTDLEIA---RTAFYDNSSYYTLNGKKVHFKEVAKVLRDHG 267
+D+ E EY++ P D RTA+ + Y G++ ++ + + G
Sbjct: 84 VDRETEGVEPTQNEYDVEPSQDASGTNDPRTAWV-MAVYEDDAGEEQQWR---RSITSQG 139
Query: 268 VD--LLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLE 325
V +NNR + Q+ +E E K + + D++A+ + K +
Sbjct: 140 VSEYRINNRVVTAQQYNEALEA------ENILIKARNFLVFQGDVEAIASQSPK-----D 188
Query: 326 LENCVQRKHNEIYQYERYVNMKNLGEHETKVQ--QMEQELTANLESIKKCTDEMESAKTE 383
L +++ + Y +K E + Q Q+ + N E IK+ ++ A+
Sbjct: 189 LTRLIEQISGSLEYKAEYERLKAEAEESAEQQTLQLNRRRAINSE-IKQYQEQKREAENY 247
Query: 384 LKTVE 388
+ E
Sbjct: 248 ARKAE 252
Score = 49 (22.3 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIG 129
+ ++ +NFKSY G+ TL F G+ S++ P G + + ++ + ++G
Sbjct: 4 LIRLELYNFKSYKGHHTL-LF--GDAYFTSIIGPNGSGKSNS--MDAISFVLG 51
>TAIR|locus:2160289 [details] [associations]
symbol:SMC6A "structural maintenance of chromosomes 6A"
species:3702 "Arabidopsis thaliana" [GO:0000155 "phosphorelay
sensor kinase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS]
[GO:0005694 "chromosome" evidence=IEA] [GO:0007059 "chromosome
segregation" evidence=ISS] [GO:0007165 "signal transduction"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0007062 "sister chromatid cohesion" evidence=IMP] [GO:0010165
"response to X-ray" evidence=IMP] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0007267 "cell-cell signaling"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0031047 "gene silencing by RNA"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051567 "histone H3-K9 methylation" evidence=RCA]
InterPro:IPR003661 InterPro:IPR027132 SMART:SM00388
InterPro:IPR003395 Pfam:PF02463 EMBL:CP002688 GO:GO:0016020
HSSP:P58301 GO:GO:0023014 GO:GO:0000724 GO:GO:0000155 GO:GO:0000160
GO:GO:0010165 GO:GO:0007062 EMBL:AB010070 PANTHER:PTHR19306:SF2
HOGENOM:HOG000030109 ProtClustDB:CLSN2686921 IPI:IPI00521865
RefSeq:NP_196383.1 UniGene:At.32690 ProteinModelPortal:Q9FLR5
SMR:Q9FLR5 PRIDE:Q9FLR5 EnsemblPlants:AT5G07660.1 GeneID:830659
KEGG:ath:AT5G07660 TAIR:At5g07660 InParanoid:Q9FLR5 OMA:INEMTIR
PhylomeDB:Q9FLR5 ArrayExpress:Q9FLR5 Genevestigator:Q9FLR5
Uniprot:Q9FLR5
Length = 1058
Score = 129 (50.5 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 53/216 (24%), Positives = 109/216 (50%)
Query: 159 NAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQII 218
N I G NGSGKS ++ ++ FG RA R + + + + G CS A+ + ++
Sbjct: 46 NFITGQNGSGKSAILTALCVAFGCRA---RGTQRAATLKDFIKTG----CSYALVYVELK 98
Query: 219 DKPNEEYEI-IPGTDLEIARTAFYDNSSYYTLN---GKKVHFK--EVAKVLRDHGVDLLN 272
++ + ++ I G L I R D++S L G+K+ + E+ +++ + +D+ N
Sbjct: 99 NQGEDAFKPEIYGDTLIIERR-ISDSTSLTVLKDHQGRKISSRKEELRELVEHYNIDVEN 157
Query: 273 NRFLILQEPIAKMEVLYGKYDEERTE---KLTRVQLVETDLKALEPELRKAVNFL-ELEN 328
++ Q+ E L+ D+++ + K T +Q V+ L+++ +L A L E+E
Sbjct: 158 PCVIMSQDK--SREFLHSGNDKDKFKFFYKATLLQQVDDILQSIGTKLNSANALLDEMEK 215
Query: 329 CVQRKHNEIYQY-ERYVNMKNLGEHETKVQQMEQEL 363
++ EI + E+ NM+++ E +V ++++L
Sbjct: 216 TIKPIEKEINELLEKIKNMEHVEEITQQVLHLKKKL 251
Score = 39 (18.8 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 7/36 (19%), Positives = 19/36 (52%)
Query: 353 ETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
+ +++ +E E + I++C + A+ L+ +E
Sbjct: 638 DDQIKDLEIEASREQSEIQECRGQKREAEMNLEGLE 673
Score = 38 (18.4 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 353 ETKVQQMEQELTANLESIKKCTDEMESAKTELK 385
E + Q+ E E+ NLE ++ ++ +T+L+
Sbjct: 657 ECRGQKREAEM--NLEGLESTMRRLKKQRTQLE 687
>ZFIN|ZDB-GENE-040426-1624 [details] [associations]
symbol:pufa "PUF (Pumilio/FBF) domain-containing
A" species:7955 "Danio rerio" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IEA] [GO:0030915 "Smc5-Smc6
complex" evidence=IEA] [GO:0008354 "germ cell migration"
evidence=IMP] InterPro:IPR027131 ZFIN:ZDB-GENE-040426-1624
GO:GO:0008354 HOGENOM:HOG000154342 PANTHER:PTHR19306:SF1
EMBL:BC055623 IPI:IPI00483675 ProteinModelPortal:Q7SXF8
STRING:Q7SXF8 ArrayExpress:Q7SXF8 Uniprot:Q7SXF8
Length = 418
Score = 105 (42.0 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 61/249 (24%), Positives = 108/249 (43%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKI-RANKLSVLMHKSDQVGGVSRCSVAIHFA 215
+ N I+G NG+GKS+++ ++ + S + R +K+ + + + G R SV I
Sbjct: 63 KLNMIVGANGTGKSSIVCAICLGLAGKTSVLGRGDKVGLYVKR-----GCQRGSVEIELY 117
Query: 216 QIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRF 275
+ + N +I ++++ +N S + LN K K V + +R+ + + N
Sbjct: 118 RT--RGN----LIVTREIQVE-----NNQSTWMLNKKHASQKAVEEAVRELHIQVGNLCQ 166
Query: 276 LILQEPIAKMEVLYGKYDEERTEK-LTRVQLVE--TDLKALEPELRKAVNFLE-----LE 327
+ QE + + + E TEK + ++ E +LK + R N + LE
Sbjct: 167 FLPQEKVGEFAKMSNSELLEATEKSVGPPEMYEFHCELKTFRTKERDLENVCKEKGNFLE 226
Query: 328 NCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQEL------TAN--LESIKKCTDEMES 379
QR ERY MK H ++Q +E++ TA LE +KK DEM+
Sbjct: 227 KARQRNERNKLDVERYY-MKK--RHLDRIQMLEKKKPWVEYETARKELEGVKKERDEMKR 283
Query: 380 AKTELKTVE 388
LK +
Sbjct: 284 KLRFLKEAQ 292
Score = 54 (24.1 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 135 RFNAIIGPNGSGKSNVI 151
+ N I+G NG+GKS+++
Sbjct: 63 KLNMIVGANGTGKSSIV 79
>UNIPROTKB|F1NEA6 [details] [associations]
symbol:SMC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0051276 "chromosome organization"
evidence=IEA] InterPro:IPR010935 Pfam:PF06470 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005694
GO:GO:0051276 SUPFAM:SSF75553 GeneTree:ENSGT00580000081628
EMBL:AADN02030887 EMBL:AADN02030888 IPI:IPI00684346
Ensembl:ENSGALT00000033118 ArrayExpress:F1NEA6 Uniprot:F1NEA6
Length = 1217
Score = 121 (47.7 bits), Expect = 0.00074, P = 0.00074
Identities = 60/263 (22%), Positives = 115/263 (43%)
Query: 150 VIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCS 209
++D + N I+G NGSGKSN ++ FV S + K L+H+ G R
Sbjct: 19 IVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLPPLKRLALLHE----GTGPRVI 74
Query: 210 VAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVD 269
A F +II ++ I ++ + R Y+ L+ K V +V +L G
Sbjct: 75 SA--FVEIIFDNSDNRLPIDKEEVSLRRVIGAKKDQYF-LDKKMVTKNDVMNLLESAGFS 131
Query: 270 LLNNRFLILQEPIAKM-------------EVLYGK-YDEERTEKLTRVQLVETDLKALEP 315
N +++ Q I +M EV + YDE + E ++ ++ E + +
Sbjct: 132 RSNPYYIVKQGKINQMATAPDSQRLKLLREVAGTRVYDERKEESISLMKETEGKREKIN- 190
Query: 316 ELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQ------ELTANLES 369
EL K + E + ++ + E+ QY+++ M+ E+ Q++ + EL+A E+
Sbjct: 191 ELLKYIE--ERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDELSAKRET 248
Query: 370 I----KKCTDEMESAKTELKTVE 388
++ D + A+ +++ +E
Sbjct: 249 SGEKSRQLRDAQQDARDKMEEIE 271
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.134 0.379 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 388 377 0.00089 117 3 11 22 0.44 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 107
No. of states in DFA: 588 (63 KB)
Total size of DFA: 218 KB (2121 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 37.51u 0.10s 37.61t Elapsed: 00:00:08
Total cpu time: 37.54u 0.10s 37.64t Elapsed: 00:00:09
Start: Thu Aug 15 15:03:01 2013 End: Thu Aug 15 15:03:10 2013
WARNINGS ISSUED: 1