RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14062
(388 letters)
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 138 bits (349), Expect = 4e-37
Identities = 56/326 (17%), Positives = 112/326 (34%), Gaps = 78/326 (23%)
Query: 77 ITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRF 136
+ + NFKSY G +G + F
Sbjct: 4 LVGLELSNFKSYRGVTKVGFGESN-----------------------------------F 28
Query: 137 NAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLM 196
+I IGPNGSGKSN++D++ FV G R++ +R+N L L+
Sbjct: 29 TSI----------------------IGPNGSGKSNMMDAISFVLGVRSNHLRSNILKDLI 66
Query: 197 H-------KSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTL 249
+ SD S A + + +++ E+ R + + Y +
Sbjct: 67 YRGVLNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKLV-----ELMRIISRNGDTSYKI 121
Query: 250 NGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETD 309
+GK V +K+ + L + + + FL+ Q + ++ E+++ + +
Sbjct: 122 DGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKE 181
Query: 310 LKALEPELRKAV-NFLELENCVQRKHNEIYQYERY-----VNMKNLGEHE---TKVQQME 360
+ L+ ++ K + E +R H E+ Y+ ++ + + +
Sbjct: 182 YEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVIN 241
Query: 361 QELTANLESIKKCTDEMESAKTELKT 386
E KK ++ K + K
Sbjct: 242 NETEQLKAEEKKILNQFLKIKKKRKE 267
>3kta_A Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xex_A* 1xew_X*
Length = 182
Score = 71.4 bits (176), Expect = 7e-15
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 160 AIIGPNGSGKSNVIDSMLFVFG-YRASKIRANKLS-VLMHKSDQVGGVSRCSVAIHFAQI 217
AI+G NGSGKSN+ D++LFV G A +RA+++S ++ S VAI+F
Sbjct: 30 AIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFN-- 87
Query: 218 IDKPNEEYEI-IPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGV 268
NE+ I ++ I R + D S Y LNG++ E+ +L +
Sbjct: 88 ----NEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMI 135
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 63.5 bits (155), Expect = 2e-11
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 14/111 (12%)
Query: 160 AIIGPNGSGKSNVIDSMLFVFG-YRASKIRANKLS-VLMHKSDQVGGVSRCSVAIHFAQI 217
AI+GPNGSGKSN+ID++ +VFG ++RA++ ++ S+ + V + F
Sbjct: 28 AIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFE-- 85
Query: 218 IDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGV 268
EI +AR + Y LNG V K++ G+
Sbjct: 86 ----ENGEEI------TVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGL 126
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 52.5 bits (126), Expect = 9e-08
Identities = 48/232 (20%), Positives = 82/232 (35%), Gaps = 17/232 (7%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFV-FGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
AIIG NGSGKS++ +++ F FG ++ K G V + F
Sbjct: 27 IVAIIGENGSGKSSIFEAVFFALFG----AGSNFNYDTIITK-----GKKSVYVELDF-- 75
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
++ Y+II D Y N Y V+ K V ++L ++ N
Sbjct: 76 EVN--GNNYKIIREYDSGRGGAKLYKNGKPYATTISAVN-KAVNEILGV-DRNMFLNSIY 131
Query: 277 ILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNE 336
I Q IAK L E KL + E + + +++ LE E
Sbjct: 132 IKQGEIAKFLSLKPSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEE 191
Query: 337 IYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
+ R M NL + + K+ + + L + + + + ++
Sbjct: 192 SLK-ARLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQ 242
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A*
1us8_A*
Length = 149
Score = 49.7 bits (119), Expect = 1e-07
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQI 217
N IIG NGSGKS+++D++L Y +I+ K G + + F
Sbjct: 25 INLIIGQNGSGKSSLLDAILVGL-YWPLRIKDIKKDEFTKV-----GARDTYIDLIF--- 75
Query: 218 IDKPNEEYEII 228
+K +Y I
Sbjct: 76 -EKDGTKYRIT 85
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 4e-07
Identities = 63/383 (16%), Positives = 119/383 (31%), Gaps = 118/383 (30%)
Query: 67 FADPTGPR-LII------TKIV-AFNFKS-------YAGYVT--LGPFNTGEVEQISMMP 109
L++ K AFN + VT L T +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ-VTDFLSAATTTHISLDHHSM 296
Query: 110 PKGKTEKETGLLEYLEE------------------IIG------TNRYKRFNAIIGPNGS 145
E ++ LL+YL+ II + + + N
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV---NCD 353
Query: 146 GKSNVIDSMLFRFNAIIGPNGSGKSNVIDS--------MLFVFGYRAS-KIRANKLSVL- 195
+ +I+S L NV++ L VF S I LS++
Sbjct: 354 KLTTIIESSL---------------NVLEPAEYRKMFDRLSVF--PPSAHIPTILLSLIW 396
Query: 196 --MHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEI-IPGTDLEIARTAFYDNSSYYTLNGK 252
+ KSD + V++ H +++K +E I IP LE+ N
Sbjct: 397 FDVIKSDVMVVVNKL----HKYSLVEKQPKESTISIPSIYLELKVKL---------ENEY 443
Query: 253 KVHFKEVAKVLRDH---GVDLLNNRFLILQEP------IAKMEVLYGKYDEERTEKLTRV 303
+H + + DH ++ + I + + E E++T
Sbjct: 444 ALH-----RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-----HHLKNIEHPERMTLF 493
Query: 304 QLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQEL 363
++V D + LE ++R + ++ Y+ Y+ +++ K +++ +
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC-----DNDPKYERLVNAI 548
Query: 364 TANLESIK------KCTDEMESA 380
L I+ K TD + A
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIA 571
Score = 49.9 bits (118), Expect = 1e-06
Identities = 38/202 (18%), Positives = 76/202 (37%), Gaps = 52/202 (25%)
Query: 222 NEEYEIIPGTDLEIARTAFYDNSSYYTL--NGKKVHFKEVAKVLRDHGVDLLNNRF---- 275
EE + I + ++ T ++TL +++ K V +VLR + L +
Sbjct: 48 KEEIDHIIMSKDAVSGTLRL----FWTLLSKQEEMVQKFVEEVLRIN-YKFLMSPIKTEQ 102
Query: 276 ----LILQEPIAKMEVLYG------KYDEERTEKLTRVQLVETDLKALEPELR------- 318
++ + I + + LY KY+ R + +++ L L P
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR---QALLELRPAKNVLIDGVL 159
Query: 319 ---KAVNFLELENC----VQRKH-NEIYQYERYVNMKNLGEHETKVQ-------QMEQEL 363
K + L+ C VQ K +I+ ++N+KN ET ++ Q++
Sbjct: 160 GSGKTW--VALDVCLSYKVQCKMDFKIF----WLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 364 TANLESIKKCTDEMESAKTELK 385
T+ + + S + EL+
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELR 235
Score = 47.2 bits (111), Expect = 7e-06
Identities = 63/418 (15%), Positives = 118/418 (28%), Gaps = 101/418 (24%)
Query: 12 QDTLVTPKRAKKTQEQDDGNVQTNDKSLDEHDLD-LDDEGGT----YVGEV----Y---I 59
+D PK +E D + + S L + +V EV Y +
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 60 PPIAPVCFADPTGPRLIITKIVAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGKT--EKE 117
PI P+ + Y +N +V + +
Sbjct: 96 SPIKTEQ-RQPSMMT-----------RMYIEQRDR-LYNDNQV-----FAKYNVSRLQPY 137
Query: 118 TGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIG--PNG-----SGKS 170
L + L E+ R + I G GSGK+ + + +
Sbjct: 138 LKLRQALLEL----RPAKNVLIDGVLGSGKT-WVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 171 NVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPG 230
N +++L L L+++ D + S + H + I + + +
Sbjct: 193 NSPETVL------------EMLQKLLYQIDP----NWTSRSDHSSNIKLRIHSIQAEL-- 234
Query: 231 TDLEIARTAFYDNSSYYTL------NGKKV--HFKEVAKVL---RDHGV-DLLNNRFLIL 278
+ ++ Y+N L K F K+L R V D L+
Sbjct: 235 --RRLLKSKPYENC----LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA---AT 285
Query: 279 QEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEI- 337
I+ +E L + ++ + L P N L + + +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKY--LDCRPQDL-PREVLTTNPRRLSIIAESIRDGLA 342
Query: 338 -YQYERYVNMKNLGEHETKVQQMEQELTANLES--IKKCTDEM----ESAKTELKTVE 388
+ ++VN L T + + LE +K D + SA +
Sbjct: 343 TWDNWKHVNCDKL----TTIIESSLN---VLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 48.8 bits (117), Expect = 5e-07
Identities = 34/180 (18%), Positives = 62/180 (34%), Gaps = 29/180 (16%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQI 217
N IIG NGSGKS+++D++L Y +I+ K G + + F
Sbjct: 25 INLIIGQNGSGKSSLLDAILVGL-YWPLRIKDIKKDEFTKV-----GARDTYIDLIF--- 75
Query: 218 IDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLN-NRFL 276
+K +Y I + + K V + +K + L+ N FL
Sbjct: 76 -EKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVT-EPSSKAISAFMEKLIPYNIFL 133
Query: 277 ------------ILQEPIAKMEVL-----YGKYDEERTEKLTRVQLVETDLKALEPELRK 319
IL+ A+ +V+ K++ + + + +K L +
Sbjct: 134 NAIYIRQGQIDAILESDEAREKVVREVLNLDKFETAYKKLSELKKTINNRIKEYRDILAR 193
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 37.7 bits (87), Expect = 0.004
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 136 FNAIIGPNGSGKSNVIDSMLF 156
N IIG NGSGKS+++D++L
Sbjct: 25 INLIIGQNGSGKSSLLDAILV 45
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 37.1 bits (86), Expect = 0.010
Identities = 21/118 (17%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
Query: 268 VDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELE 327
+ L R ++ ++E + K + E ++ ++ ++ + L+ +L K E E
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK----KEEE 1096
Query: 328 NCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELK 385
E ++ +K + E E+ + ++++ LES K ++ E K +L
Sbjct: 1097 LQAALARLEDETSQKNNALKKIRELESHISDLQED----LESEKAARNKAEKQKRDLS 1150
Score = 29.0 bits (65), Expect = 3.6
Identities = 16/92 (17%), Positives = 35/92 (38%)
Query: 294 EERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHE 353
E E R+ + +L+ + E+ + E + + + Q + + L E E
Sbjct: 909 AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 968
Query: 354 TKVQQMEQELTANLESIKKCTDEMESAKTELK 385
Q+++ E IKK D++ + +
Sbjct: 969 AARQKLQLEKVTADGKIKKMEDDILIMEDQNN 1000
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A
motif, P-loop, signature motif,
replication/recombination complex; HET: DNA; 1.61A
{Deinococcus radiodurans}
Length = 359
Score = 35.3 bits (82), Expect = 0.026
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 134 KRFNAIIGPNGSGKSNVIDS 153
+ I G NG+GK+N++++
Sbjct: 26 EGVTGIYGENGAGKTNLLEA 45
Score = 35.3 bits (82), Expect = 0.028
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 157 RFNAIIGPNGSGKSNVIDS 175
I G NG+GK+N++++
Sbjct: 27 GVTGIYGENGAGKTNLLEA 45
>3zvk_A VAPC2, toxin of toxin-antitoxin system; antitoxin-toxin-DNA
complex, protein-DNA complex; HET: DNA MES; 2.50A
{Rickettsia felis}
Length = 134
Score = 33.3 bits (75), Expect = 0.042
Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Query: 152 DSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVA 211
DS + N S+++ + L ++ K N+ + + S
Sbjct: 19 DSYYNNLELLAKNNTIAISSIVLAELQYGVSKSKKKEQNQSKLDIFLSRLEIIDFSAKCT 78
Query: 212 IHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEV 259
++ ++ + ++ II DL IA A +N++ T N K FK +
Sbjct: 79 FYYGELRTELEQKGLIIGNNDLLIASHAIAENATLVTNNIK--EFKRI 124
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 34.1 bits (79), Expect = 0.051
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 7/35 (20%)
Query: 136 FNAIIGPNGSGKSNVIDSMLFR-FNAIIGPNGSGK 169
AI+G NG GKS LF+ FN I+ P+ SG+
Sbjct: 36 VTAILGGNGVGKST-----LFQNFNGILKPS-SGR 64
Score = 32.5 bits (75), Expect = 0.19
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 158 FNAIIGPNGSGKS 170
AI+G NG GKS
Sbjct: 36 VTAILGGNGVGKS 48
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 34.1 bits (79), Expect = 0.053
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 10/41 (24%)
Query: 160 AIIGPNGSGKS---NVIDSMLF-------VFGYRASKIRAN 190
+ G NG+GK+ N++++ +FG K+ +
Sbjct: 51 ILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYS 91
Score = 32.2 bits (74), Expect = 0.26
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 138 AIIGPNGSGKS 148
+ G NG+GK+
Sbjct: 51 ILYGLNGAGKT 61
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 34.1 bits (79), Expect = 0.055
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 135 RFNAIIGPNGSGKS 148
++GPNG+GKS
Sbjct: 27 EILHLVGPNGAGKS 40
Score = 34.1 bits (79), Expect = 0.055
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 157 RFNAIIGPNGSGKS 170
++GPNG+GKS
Sbjct: 27 EILHLVGPNGAGKS 40
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 34.1 bits (78), Expect = 0.071
Identities = 33/237 (13%), Positives = 74/237 (31%), Gaps = 20/237 (8%)
Query: 160 AIIGPNGSGKSNVIDSMLFV-FGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQII 218
+ GPNG+GKS++ +++ F FG + + V + D + F +
Sbjct: 27 VVEGPNGAGKSSLFEAISFALFG-NGIRYPNSYDYVNRNAVD-----GTARLVFQFER-- 78
Query: 219 DKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLN------ 272
+ YEII + + S NGKK ++ +L
Sbjct: 79 --GGKRYEIIRE--INALQRKHNAKLSEILENGKKAAIAAKPTSVKQEVEKILGIEHRTF 134
Query: 273 -NRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQ 331
+ Q I K+ + E + + + L+ L E K +
Sbjct: 135 IRTVFLPQGEIDKLLISPPSEITEIISDVFQSKETLEKLEKLLKEKMKKLENEISSGGAG 194
Query: 332 RKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
+ + + ++ + + ++ + + + ++ K L +
Sbjct: 195 GAGGSLEKKLKEMSDEYNNLDLLRKYLFDKSNFSRYFTGRVLEAVLKRTKAYLDILT 251
Score = 32.5 bits (74), Expect = 0.21
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 138 AIIGPNGSGKSNVIDSMLF 156
+ GPNG+GKS++ +++ F
Sbjct: 27 VVEGPNGAGKSSLFEAISF 45
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 33.3 bits (77), Expect = 0.087
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 7/35 (20%)
Query: 136 FNAIIGPNGSGKSNVIDSMLFR-FNAIIGPNGSGK 169
+ G GSGKS L + +I P SG
Sbjct: 35 CLLVAGNTGSGKST-----LLQIVAGLIEPT-SGD 63
Score = 32.2 bits (74), Expect = 0.22
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 158 FNAIIGPNGSGKS 170
+ G GSGKS
Sbjct: 35 CLLVAGNTGSGKS 47
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 32.9 bits (76), Expect = 0.14
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 138 AIIGPNGSGKSNVIDSML 155
A++G NG GKS ++D +L
Sbjct: 35 AVLGQNGCGKSTLLDLLL 52
Score = 32.9 bits (76), Expect = 0.14
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 160 AIIGPNGSGKSNVIDSML 177
A++G NG GKS ++D +L
Sbjct: 35 AVLGQNGCGKSTLLDLLL 52
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 33.0 bits (76), Expect = 0.16
Identities = 11/21 (52%), Positives = 18/21 (85%), Gaps = 1/21 (4%)
Query: 138 AIIGPNGSGKSNVIDSMLFRF 158
A++GP+G+GKS ++ +LFRF
Sbjct: 84 ALVGPSGAGKSTIL-RLLFRF 103
Score = 27.2 bits (61), Expect = 9.3
Identities = 10/21 (47%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Query: 160 AIIGPNGSGKSNVIDSMLFVF 180
A++GP+G+GKS ++ +LF F
Sbjct: 84 ALVGPSGAGKSTIL-RLLFRF 103
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 32.9 bits (74), Expect = 0.17
Identities = 37/189 (19%), Positives = 69/189 (36%), Gaps = 25/189 (13%)
Query: 212 IHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKE----VAKVLRDHG 267
I + + +EE + + A +++ +NGK+V ++ VA+V
Sbjct: 201 IKIYEFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEH 260
Query: 268 VDLLNNRFLILQEPIAKM-----EVLYGKYDEERTEKLTRVQLVETDLK------ALEPE 316
D R ++++ + + V Y Y R+ KL V D P
Sbjct: 261 CDFTILRNMLIRTHMQDLKDVTNNVHYENY---RSRKLAAVTYNGVDNNKNKGQLTKSPL 317
Query: 317 LRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDE 376
+ E +++ E+ Q V + E K++ E EL E +KK
Sbjct: 318 AQMEEERREHVAKMKKMEMEMEQ----VFEMKVKEKVQKLKDSEAELQRRHEQMKK---N 370
Query: 377 MESAKTELK 385
+E+ EL+
Sbjct: 371 LEAQHKELE 379
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 33.1 bits (76), Expect = 0.18
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 136 FNAIIGPNGSGKSNVIDSMLFRF 158
A++G +G GKS V+ +L RF
Sbjct: 1061 TLALVGSSGCGKSTVV-QLLERF 1082
Score = 31.5 bits (72), Expect = 0.49
Identities = 7/21 (33%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 138 AIIGPNGSGKSNVIDSMLFRF 158
A++G +G GKS + ++ R
Sbjct: 420 ALVGNSGCGKSTTV-QLMQRL 439
Score = 28.8 bits (65), Expect = 4.0
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 160 AIIGPNGSGKSNVI 173
A++G +G GKS +
Sbjct: 420 ALVGNSGCGKSTTV 433
Score = 28.1 bits (63), Expect = 7.4
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 158 FNAIIGPNGSGKSNVIDSML 177
A++G +G GKS V+ +L
Sbjct: 1061 TLALVGSSGCGKSTVV-QLL 1079
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning;
2.20A {Escherichia coli} SCOP: c.37.1.12
Length = 227
Score = 31.7 bits (71), Expect = 0.31
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLS 193
+ G NG+GKS + + + + + +
Sbjct: 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64
Score = 29.8 bits (66), Expect = 1.4
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 134 KRFNAIIGPNGSGKSNVIDSMLF 156
+ + G NG+GKS + + +
Sbjct: 27 ELVTTLSGGNGAGKSTTMAAFVT 49
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 31.8 bits (73), Expect = 0.33
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 138 AIIGPNGSGKSNVIDSMLFRF 158
A++G GSGKS + +L+RF
Sbjct: 50 ALVGHTGSGKSTIA-KLLYRF 69
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 31.7 bits (73), Expect = 0.34
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 138 AIIGPNGSGKSNVIDSMLFRF 158
A++GPNGSGKS V ++L
Sbjct: 49 ALVGPNGSGKSTVA-ALLQNL 68
Score = 27.9 bits (63), Expect = 6.0
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 160 AIIGPNGSGKSNVI 173
A++GPNGSGKS V
Sbjct: 49 ALVGPNGSGKSTVA 62
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 31.3 bits (72), Expect = 0.38
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 138 AIIGPNGSGKSNVIDSMLFRF 158
A GP+G GKS + S+L RF
Sbjct: 32 AFAGPSGGGKSTIF-SLLERF 51
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 31.3 bits (72), Expect = 0.40
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 7/26 (26%)
Query: 138 AIIGPNGSGKSNVIDSMLFRFNAIIG 163
IIGPNGSGKS + N I G
Sbjct: 37 LIIGPNGSGKSTL-------INVITG 55
Score = 30.9 bits (71), Expect = 0.50
Identities = 13/17 (76%), Positives = 13/17 (76%), Gaps = 3/17 (17%)
Query: 160 AIIGPNGSGKS---NVI 173
IIGPNGSGKS NVI
Sbjct: 37 LIIGPNGSGKSTLINVI 53
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 31.8 bits (73), Expect = 0.41
Identities = 12/21 (57%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Query: 138 AIIGPNGSGKSNVIDSMLFRF 158
A++GP+GSGKS V+ S+L R
Sbjct: 374 ALVGPSGSGKSTVL-SLLLRL 393
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 31.6 bits (72), Expect = 0.52
Identities = 14/107 (13%), Positives = 38/107 (35%), Gaps = 3/107 (2%)
Query: 282 IAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYE 341
+AK E+ K + E+ ++ L+ +L++ ++ E + +
Sbjct: 901 MAKRELKKLKIEARSVERYKKLH---IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT 957
Query: 342 RYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
+ L +++ E+E + +E+ + EL +
Sbjct: 958 YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004
Score = 28.9 bits (65), Expect = 4.0
Identities = 20/118 (16%), Positives = 47/118 (39%), Gaps = 11/118 (9%)
Query: 268 VDLLNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELE 327
+D N + L E + +E+ Y E+ + R+++ E + K + L+
Sbjct: 937 IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVL------SLQ 990
Query: 328 NCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELK 385
+ + E++Q + K + E + + E + +K+ +++ K EL
Sbjct: 991 EEIAKLRKELHQTQT--EKKTI---EEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 31.0 bits (71), Expect = 0.62
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 3/17 (17%)
Query: 138 AIIGPNGSGKS---NVI 151
AI+GPNGSGKS +
Sbjct: 50 AIMGPNGSGKSTLSATL 66
Score = 31.0 bits (71), Expect = 0.62
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 3/17 (17%)
Query: 160 AIIGPNGSGKS---NVI 173
AI+GPNGSGKS +
Sbjct: 50 AIMGPNGSGKSTLSATL 66
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 30.6 bits (70), Expect = 0.68
Identities = 8/17 (47%), Positives = 13/17 (76%), Gaps = 3/17 (17%)
Query: 138 AIIGPNGSGKS---NVI 151
A++GPNG+GKS ++
Sbjct: 33 ALMGPNGAGKSTLGKIL 49
Score = 30.6 bits (70), Expect = 0.68
Identities = 8/17 (47%), Positives = 13/17 (76%), Gaps = 3/17 (17%)
Query: 160 AIIGPNGSGKS---NVI 173
A++GPNG+GKS ++
Sbjct: 33 ALMGPNGAGKSTLGKIL 49
>2ilk_A Interleukin-10; cytokine; 1.60A {Homo sapiens} SCOP: a.26.1.3 PDB:
1j7v_L 1y6k_L 2h24_A 1inr_A 1ilk_A 1lk3_A 1y6n_L 1vlk_A
1y6m_L
Length = 160
Score = 29.6 bits (66), Expect = 0.92
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 285 MEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELEN---CVQRKHNEIYQYE 341
+E + + + + + V + +LK L LR+ FL EN V++ N + +
Sbjct: 73 LEEVMPQAENQDPDIKAHVNSLGENLKTLRLRLRRCHRFLPCENKSKAVEQVKNAFNKLQ 132
Query: 342 RYVNMKNLGEHETKVQQMEQELTANLES 369
K + E + + +E +T + +
Sbjct: 133 EKGIYKAMSEFDIFINYIEAYMTMKIRN 160
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 29.8 bits (68), Expect = 1.2
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
Query: 138 AIIGPNGSGKSNVIDSMLFRFNAIIG--PNGSGKSNVIDSMLFV 179
A+ G G+GK+ S+L I+G GK + F
Sbjct: 38 AVAGSTGAGKT----SLL---MMIMGELEPSEGKIKHSGRISFC 74
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 30.0 bits (68), Expect = 1.3
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
Query: 138 AIIGPNGSGKSNVIDSMLFRFNAIIG--PNGSGKSNVIDSMLFV 179
A+ G G+GK+ S+L I+G GK + F
Sbjct: 68 AVAGSTGAGKT----SLL---MMIMGELEPSEGKIKHSGRISFC 104
>1ku9_A Hypothetical protein MJ223; putative transcription factor,
homodimeric winged-helix fold, structural genomics, PSI;
2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Length = 152
Score = 29.2 bits (65), Expect = 1.4
Identities = 13/86 (15%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Query: 298 EKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQ 357
+ LT ++E LK + + ++ LE V++ + + Y + + +
Sbjct: 40 KPLTISDIMEE-LKISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVDGFSSIKDIAK 98
Query: 358 QMEQELTANLESIKKCTDEMESAKTE 383
+ + E +KK ++ + E
Sbjct: 99 RKHDLIAKTYEDLKKLEEKCNEEEKE 124
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 29.9 bits (66), Expect = 1.4
Identities = 29/237 (12%), Positives = 63/237 (26%), Gaps = 7/237 (2%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSV---AIH 213
+ G NG+GKS + + + + + S + +
Sbjct: 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGKLKAGVCY 89
Query: 214 FAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNN 273
+ I +IA + ++L + ++
Sbjct: 90 AVLETVNSRAQRIITGVRLQQIAGRDKKVDIRPFSLQNVPMTDSVISLFTEQVANKARVL 149
Query: 274 RFLILQEPIAKMEVLYGKYD--EERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQ 331
L+E + V + Y + + + ++ L++ + K +E
Sbjct: 150 SLNDLKEKFEETAVTFKPYHSITDYHSFMFDLGILPKRLRSSS-DRNKFYKLIEASLYGG 208
Query: 332 RKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
Y+ +N G + Q ME L N A KT++
Sbjct: 209 ISSVITKSLRDYLLPENSGVRQA-FQDMEAALRENSGGSGGSISAESVANILRKTIQ 264
Score = 27.9 bits (61), Expect = 6.2
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 135 RFNAIIGPNGSGKSNVIDSMLF 156
+ G NG+GKS + +
Sbjct: 30 LVTTLSGGNGAGKSTTMAGFVT 51
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 29.2 bits (65), Expect = 1.4
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 31/140 (22%)
Query: 278 LQEPIAKMEVLYGKYDE------------ERTEKLTRVQLVETDLKALEPELRKAVNFLE 325
+++ K+E L K ER E+ R +L E LE EL+ N L+
Sbjct: 2 MKQLEDKVEELLSKNYHLENEVARLKKLLERAEE--RAELSEGKSAELEEELKTVTNNLK 59
Query: 326 -LENCVQRKHNEIYQYERYVNM----------------KNLGEHETKVQQMEQELTANLE 368
LE ++ + +YE + + +++ + E + +E EL A
Sbjct: 60 SLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKL 119
Query: 369 SIKKCTDEMESAKTELKTVE 388
K ++EM+ + +++ +
Sbjct: 120 KYKAISEEMKQLEDKVEELL 139
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 29.6 bits (66), Expect = 1.5
Identities = 19/120 (15%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 271 LNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLE-LENC 329
+ + +I++ + + E + + E ++ V +LK+LE + K + E
Sbjct: 165 VARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEE 224
Query: 330 VQRKHNEIYQYERYVNM--KNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTV 387
++ +++ + E +++ + E + +E EL A K ++E++ A ++ ++
Sbjct: 225 IKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
Score = 28.5 bits (63), Expect = 4.1
Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 6/119 (5%)
Query: 271 LNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLE-LENC 329
LN R + +E + + + ++ E E +K +E +K +E E
Sbjct: 88 LNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQ 147
Query: 330 VQRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
++ + +R E K+ +E +L E + + + E+KTV
Sbjct: 148 LKEAKHIAEDADR-----KYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVT 201
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 29.4 bits (67), Expect = 1.5
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 138 AIIGPNGSGKSNVIDSMLFRF 158
I+G +GSGKS + ++ RF
Sbjct: 39 GIVGRSGSGKSTLT-KLIQRF 58
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix,
structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Length = 77
Score = 27.5 bits (62), Expect = 1.6
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 339 QYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTEL 384
QYE KNL E E + +L+ E+ + D + AK E
Sbjct: 17 QYESVAA-KNLQEAEEWYKSKFADLS---EAANRNNDALRQAKQES 58
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor,
acetylation, DNA-binding, isopeptide bond, nucleus;
2.80A {Mus musculus}
Length = 107
Score = 28.1 bits (62), Expect = 1.7
Identities = 12/85 (14%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 304 QLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQEL 363
L + ++ L+ R N +C ++ + + E+ E + +V+++ E
Sbjct: 27 GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKA-----ELQQEVEKLASEN 81
Query: 364 TANLESIKKCTDEMESAKTELKTVE 388
+ + + E+ + +TV
Sbjct: 82 ASMKLELDALRSKYEALQNFARTVA 106
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 29.4 bits (67), Expect = 1.8
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 3/19 (15%)
Query: 136 FNAIIGPNGSGKS---NVI 151
F +I+GP+GSGKS N+I
Sbjct: 33 FVSIMGPSGSGKSTMLNII 51
Score = 29.4 bits (67), Expect = 1.8
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 3/19 (15%)
Query: 158 FNAIIGPNGSGKS---NVI 173
F +I+GP+GSGKS N+I
Sbjct: 33 FVSIMGPSGSGKSTMLNII 51
>2vn6_B Endoglucanase A; cell adhesion, carbohydrate metabolism,
polysaccharide degradation, hydrolase, glycosidase,
cellulose degradation; 1.49A {Clostridium
cellulolyticum} PDB: 2vn5_B
Length = 64
Score = 27.1 bits (61), Expect = 1.9
Identities = 7/42 (16%), Positives = 11/42 (26%), Gaps = 11/42 (26%)
Query: 143 NGSGKSNVIDSMLFRFNAIIGP----------NGSGKSNVID 174
N G + D + I+ N + N D
Sbjct: 8 NNDGNVDSTDFAGLK-KYIMAADHAYVKNLDVNLDNEVNAFD 48
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 29.5 bits (67), Expect = 1.9
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 11/41 (26%)
Query: 131 NRYKRFNAIIGPNGS--GKSNVIDSMLFRFNAIIGPNGSGK 169
N YKR NG GKSN++ +IGP GSGK
Sbjct: 33 NHYKRLRNGDTSNGVELGKSNIL---------LIGPTGSGK 64
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 29.1 bits (66), Expect = 2.0
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 138 AIIGPNGSGKSNVIDSMLFRFNAIIG--PNGSGKSNVIDSMLFV 179
A++G G GKS S+L +A++ G + S+ +V
Sbjct: 35 AVVGQVGCGKS----SLL---SALLAEMDKVEGHVAIKGSVAYV 71
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 29.6 bits (66), Expect = 2.3
Identities = 22/201 (10%), Positives = 60/201 (29%), Gaps = 21/201 (10%)
Query: 160 AIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIID 219
A+IGPNG+GKS +I+ + ++ V H++ ++ + + + A + +
Sbjct: 703 AVIGPNGAGKSTLINVL-------TGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDK 755
Query: 220 KPNE-EYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLIL 278
P+E + + N + K + + +
Sbjct: 756 TPSEYIQWRFQTGEDRETM---DRANRQINENDAEAMNK----------IFKIEGTPRRI 802
Query: 279 QEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIY 338
++ + E + + + + EL + E+
Sbjct: 803 AGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVD 862
Query: 339 QYERYVNMKNLGEHETKVQQM 359
E + + ++++
Sbjct: 863 MKEALASGQFRPLTRKEIEEH 883
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 29.2 bits (66), Expect = 2.8
Identities = 8/69 (11%), Positives = 20/69 (28%), Gaps = 9/69 (13%)
Query: 103 EQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGS-GKSNVIDSMLFRFNAI 161
E + + + + + + G S ++ +
Sbjct: 332 EALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEIL--------VM 383
Query: 162 IGPNGSGKS 170
+G NG+GK+
Sbjct: 384 MGENGTGKT 392
Score = 28.1 bits (63), Expect = 5.3
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 138 AIIGPNGSGKSNVIDSMLFRFNAIIG---PNGSGKSNVIDSMLFVFGYRASKIRANKLSV 194
++G NG GKS + + G PN + + + +R S+++ +
Sbjct: 107 GLVGTNGIGKSTAL-------KILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM 159
Query: 195 L 195
L
Sbjct: 160 L 160
>1daq_A Endoglucanase SS, CELS; cellulose degradation, cellulosome,
calcium-binding, hydrolase; NMR {Clostridium
thermocellum} SCOP: a.139.1.1 PDB: 1dav_A
Length = 71
Score = 26.8 bits (60), Expect = 3.3
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 12/43 (27%)
Query: 143 NGSGKSNVIDSMLFRFNAIIGP-----------NGSGKSNVID 174
N GK N D++ + ++ N G+ N D
Sbjct: 10 NDDGKVNSTDAVALK-RYVLRSGISINTDNADLNEDGRVNSTD 51
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 28.2 bits (64), Expect = 3.3
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 136 FNAIIGPNGSGKS 148
F +IIG +GSGKS
Sbjct: 32 FVSIIGASGSGKS 44
Score = 28.2 bits (64), Expect = 3.3
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 158 FNAIIGPNGSGKS 170
F +IIG +GSGKS
Sbjct: 32 FVSIIGASGSGKS 44
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 28.8 bits (65), Expect = 3.4
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 9/23 (39%)
Query: 126 EIIGTNRYKRFNAIIGPNGSGKS 148
E+IG I+GPNG GK+
Sbjct: 383 EVIG---------IVGPNGIGKT 396
Score = 28.8 bits (65), Expect = 4.0
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 160 AIIGPNGSGKS 170
I+GPNG GK+
Sbjct: 386 GIVGPNGIGKT 396
Score = 28.0 bits (63), Expect = 5.7
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 138 AIIGPNGSGKS 148
I+GPNG+GK+
Sbjct: 121 GIVGPNGTGKT 131
Score = 28.0 bits (63), Expect = 5.7
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 160 AIIGPNGSGKS 170
I+GPNG+GK+
Sbjct: 121 GIVGPNGTGKT 131
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 28.7 bits (65), Expect = 3.4
Identities = 10/21 (47%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 138 AIIGPNGSGKSNVIDSMLFRF 158
A++G +GSGKS + S++ RF
Sbjct: 373 ALVGRSGSGKSTIA-SLITRF 392
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA LDA; 2.50A
{Caenorhabditis elegans} SCOP: a.37.1.1
Length = 92
Score = 26.8 bits (59), Expect = 3.6
Identities = 10/51 (19%), Positives = 19/51 (37%)
Query: 294 EERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYV 344
E + L L E + + R+ N + C QR+ + + Y+
Sbjct: 42 SELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSHYI 92
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 28.5 bits (64), Expect = 3.9
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 139 IIGPNGSGKSNVIDSMLFRFNAIIGPNGS 167
++G GSGKS ++ S R ++ G
Sbjct: 52 LLGRTGSGKSTLL-SAFLR---LLNTEGE 76
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 4.1
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 7/29 (24%)
Query: 298 EKLTRVQLVETDLKALEPE----LRKAVN 322
EK ++ ++ LK + L A+
Sbjct: 18 EK-QALKKLQASLKLYADDSAPAL--AIK 43
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 28.3 bits (64), Expect = 4.1
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 138 AIIGPNGSGKS 148
+IIG +GSGKS
Sbjct: 36 SIIGSSGSGKS 46
Score = 28.3 bits (64), Expect = 4.1
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 160 AIIGPNGSGKS 170
+IIG +GSGKS
Sbjct: 36 SIIGSSGSGKS 46
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil,
alanine, axial stagger, radius, SIDE-chain packing,
crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 27.7 bits (61), Expect = 4.1
Identities = 20/118 (16%), Positives = 45/118 (38%), Gaps = 4/118 (3%)
Query: 271 LNNRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCV 330
+N R +++E + + + ++ E E +K +E +K +E++
Sbjct: 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQ 60
Query: 331 QRKHNEIYQYERYVNMKNLGEHETKVQQMEQELTANLESIKKCTDEMESAKTELKTVE 388
++ I + + E K+ +E +L E + + + ELKTV
Sbjct: 61 LKEAKHIAE----DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVT 114
>1ac5_A KEX1(delta)P; carboxypeptidase, hydrolase, glycoprotein,
transmembrane; HET: NAG; 2.40A {Saccharomyces
cerevisiae} SCOP: c.69.1.5
Length = 483
Score = 28.1 bits (63), Expect = 5.1
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 73 PRLIITKIVAFNFKSYAGYVTLGPFNTGE 101
P L + + +AG++ L + E
Sbjct: 15 PGLSEVPDPSNIPQMHAGHIPLRSEDADE 43
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 28.1 bits (63), Expect = 5.3
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 9/48 (18%)
Query: 158 FNAIIGPNGSGKS---NVIDSML------FVFGYRASKIRANKLSVLM 196
I+GPNGSGK+ I +L F+ G KIR
Sbjct: 32 KVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTN 79
Score = 27.7 bits (62), Expect = 6.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 136 FNAIIGPNGSGKS 148
I+GPNGSGK+
Sbjct: 32 KVIILGPNGSGKT 44
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 28.3 bits (64), Expect = 5.3
Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 138 AIIGPNGSGKSNVIDSMLFRF 158
A++G +GSGKS + ++ RF
Sbjct: 373 ALVGRSGSGKSTIA-NLFTRF 392
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 28.3 bits (64), Expect = 5.6
Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 138 AIIGPNGSGKSNVIDSMLFRF 158
A +G +G GKS +I +++ RF
Sbjct: 371 AFVGMSGGGKSTLI-NLIPRF 390
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 28.0 bits (63), Expect = 6.3
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 9/23 (39%)
Query: 126 EIIGTNRYKRFNAIIGPNGSGKS 148
E+IG I+GPNG GK+
Sbjct: 313 EVIG---------IVGPNGIGKT 326
Score = 27.6 bits (62), Expect = 7.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 160 AIIGPNGSGKS 170
I+GPNG GK+
Sbjct: 316 GIVGPNGIGKT 326
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 27.7 bits (62), Expect = 7.1
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 9/23 (39%)
Query: 126 EIIGTNRYKRFNAIIGPNGSGKS 148
EIIG I+GPNG GK+
Sbjct: 295 EIIG---------ILGPNGIGKT 308
Score = 27.7 bits (62), Expect = 7.3
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 150 VIDSMLFRFN---AIIGPNGSGKS 170
V+D+ + I+GPNG GK+
Sbjct: 285 VVDNGEAKEGEIIGILGPNGIGKT 308
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 27.6 bits (62), Expect = 7.3
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 139 IIGPNGSGKSNVI 151
+IGP+GSGKS +
Sbjct: 55 VIGPSGSGKSTFL 67
Score = 27.6 bits (62), Expect = 7.3
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 161 IIGPNGSGKSNVI 173
+IGP+GSGKS +
Sbjct: 55 VIGPSGSGKSTFL 67
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 27.5 bits (62), Expect = 7.7
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 15/81 (18%)
Query: 255 HFKEVAKVLRDHGVDLLNNRFLIL----QEPIAKMEVL----------YGKYD-EERTEK 299
+ + +R+ GV L L L QE +++ + K EE+
Sbjct: 10 EPEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEAL 69
Query: 300 LTRVQLVETDLKALEPELRKA 320
+ R + + + K LE LR+
Sbjct: 70 IARGKALGEEAKRLEEALREK 90
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 27.6 bits (60), Expect = 7.7
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 115 EKETGLLEYLEEII-GTNRYKRFNAII--GPNGSGKSNVIDSMLFRFN 159
E + L L + G K+ AI+ G +G+GK+ + F
Sbjct: 10 EFKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 26.9 bits (59), Expect = 8.8
Identities = 21/163 (12%), Positives = 46/163 (28%), Gaps = 34/163 (20%)
Query: 160 AIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIID 219
++G SGK+ +++ + + V K
Sbjct: 8 QVVGYKHSGKTTLMEKWV-------AAAVREGWRVGTVKHH------------GHGGEPA 48
Query: 220 KPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFK-------EVAKVLRDHGVDLLN 272
+P G D A ++ ++H + +V + +DL+
Sbjct: 49 RP-------EGVDSVRHERAGAVATAVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVL 101
Query: 273 NRFLILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEP 315
QE K+ ++ + D + L ++ V P
Sbjct: 102 VEG-YKQERHPKVVLVRSEEDWASLQHLANIRAVIAWEPLEGP 143
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 27.0 bits (61), Expect = 8.9
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 138 AIIGPNGSGKS 148
+IG NG+GK+
Sbjct: 36 TLIGANGAGKT 46
Score = 27.0 bits (61), Expect = 8.9
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 160 AIIGPNGSGKS 170
+IG NG+GK+
Sbjct: 36 TLIGANGAGKT 46
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 27.5 bits (62), Expect = 9.3
Identities = 10/21 (47%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Query: 138 AIIGPNGSGKSNVIDSMLFRF 158
A++GP GSGK+ ++ ++L RF
Sbjct: 385 ALVGPTGSGKTTIV-NLLMRF 404
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 27.6 bits (62), Expect = 9.8
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 259 VAKVLRDHGVDLLNNRFL--ILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPE 316
+ +RD GVDL L + + + D + L ++ + LE +
Sbjct: 198 AHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETD 257
Query: 317 L 317
L
Sbjct: 258 L 258
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 27.2 bits (60), Expect = 9.8
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 138 AIIGPNGSGKSNVIDSML 155
+ G G+GKS ++ +
Sbjct: 57 LVNGATGTGKSVLLRELA 74
Score = 27.2 bits (60), Expect = 9.8
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 160 AIIGPNGSGKSNVIDSML 177
+ G G+GKS ++ +
Sbjct: 57 LVNGATGTGKSVLLRELA 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.135 0.380
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,878,707
Number of extensions: 365728
Number of successful extensions: 1333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1302
Number of HSP's successfully gapped: 156
Length of query: 388
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 293
Effective length of database: 4,049,298
Effective search space: 1186444314
Effective search space used: 1186444314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.1 bits)