RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14062
(388 letters)
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 81.3 bits (199), Expect = 2e-17
Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 2/131 (1%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSR--CSVAIHF 214
F +IIGPNGSGKSN++D++ FV G R++ +R+N L L+++ S +
Sbjct: 26 NFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNILKDLIYRGVLNDENSDDYDNEGAAS 85
Query: 215 AQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNR 274
+ + + +E+ R + + Y ++GK V +K+ + L + + +
Sbjct: 86 SNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLENENILIKAKN 145
Query: 275 FLILQEPIAKM 285
FL+ Q + ++
Sbjct: 146 FLVFQGDVEQI 156
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 69.7 bits (169), Expect = 6e-14
Identities = 35/214 (16%), Positives = 77/214 (35%), Gaps = 21/214 (9%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLSVLMHKSDQVGGVSRCSVAIHFA 215
R AI+GPNGSGKSN+ID++ +VFG ++ K +RA++ ++ + +
Sbjct: 25 RVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSE-----------NLP 73
Query: 216 QIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRF 275
E G ++ +AR + Y LNG V K++ G+ ++
Sbjct: 74 PAGSAYVELVFEENGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLG-VDFYS 132
Query: 276 LILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRK--------AVNFLELE 327
++ Q I ++ + + K + + + + L +
Sbjct: 133 IVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFNRFISLLFFGGEGRLNIV 192
Query: 328 NCVQRKHNEIYQYERYVNMKNLGEHETKVQQMEQ 361
+ + + ++ + + +
Sbjct: 193 SEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKA 226
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 69.2 bits (168), Expect = 1e-13
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 6/139 (4%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYRASK-IRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
F AI+G NGSGKSN+ D++LFV G ++K +RA+++S L+ G +
Sbjct: 28 FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFA----GSKNEPPAKYAEVA 83
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFL 276
I + I ++ I R + D S Y LNG++ E+ +L + + +
Sbjct: 84 IYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMIS-PDGYNI 142
Query: 277 ILQEPIAKMEVLYGKYDEE 295
+LQ I K +
Sbjct: 143 VLQGDITKFIKMSPLERRL 161
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 57.0 bits (136), Expect = 5e-10
Identities = 13/183 (7%), Positives = 49/183 (26%), Gaps = 5/183 (2%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQ 216
+ G NG+GKS + + + + + + S +
Sbjct: 25 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCY 84
Query: 217 IIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDL-LNNRF 275
+ + + + ++ K + + ++ + N
Sbjct: 85 SML----DTINSRHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNER 140
Query: 276 LILQEPIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHN 335
P+ +++ + + ++ + + + L R+ + + +
Sbjct: 141 QARVLPLNELKDKLEAMEGVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEA 200
Query: 336 EIY 338
+Y
Sbjct: 201 SLY 203
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 49.8 bits (117), Expect = 3e-07
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQI 217
N IIG NGSGKS+++D++L Y +I+ K + +
Sbjct: 25 INLIIGQNGSGKSSLLDAILVGL-YWPLRIKDIKKDEFTKVGARDTYIDLIFEKDGTKYR 83
Query: 218 ID 219
I
Sbjct: 84 IT 85
Score = 43.7 bits (101), Expect = 2e-05
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVI 173
+ N IIG NGSGKS+++D++L + K
Sbjct: 23 EGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFT 62
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 40.1 bits (92), Expect = 3e-04
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYRAS 185
N IIG NGSGKS+++D++L +
Sbjct: 25 INLIIGQNGSGKSSLLDAILVGLYWPLR 52
Score = 38.6 bits (88), Expect = 8e-04
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 134 KRFNAIIGPNGSGKSNVIDSMLF 156
+ N IIG NGSGKS+++D++L
Sbjct: 23 EGINLIIGQNGSGKSSLLDAILV 45
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 30.7 bits (69), Expect = 0.28
Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 136 FNAIIGPNGSGKSNVIDSMLFRF 158
AI G GSGK++++ ++
Sbjct: 64 MLAITGSTGSGKTSLL-MLILGE 85
Score = 29.5 bits (66), Expect = 0.70
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 158 FNAIIGPNGSGKSNVIDSML 177
AI G GSGK++++ +L
Sbjct: 64 MLAITGSTGSGKTSLLMLIL 83
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 30.2 bits (68), Expect = 0.33
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 136 FNAIIGPNGSGKSNVIDSMLFRF 158
A GP+G GKS + S+L RF
Sbjct: 30 IIAFAGPSGGGKSTIF-SLLERF 51
Score = 29.1 bits (65), Expect = 0.88
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 158 FNAIIGPNGSGKSNVIDSML 177
A GP+G GKS + +
Sbjct: 30 IIAFAGPSGGGKSTIFSLLE 49
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 30.5 bits (68), Expect = 0.37
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 122 EYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSM 176
+ + ++ R ++I GKS + DS++ R II +G++ D+
Sbjct: 5 DQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQR-AGIISAAKAGEARFTDTR 58
Score = 27.0 bits (59), Expect = 3.8
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 160 AIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHF 214
++I GKS + DS++ G ++ K +Q G++ S AI
Sbjct: 21 SVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISL 75
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 29.9 bits (67), Expect = 0.39
Identities = 26/151 (17%), Positives = 52/151 (34%), Gaps = 15/151 (9%)
Query: 138 AIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMH 197
++GPNG+GKS ++L R + GS + G A KL++
Sbjct: 29 HLVGPNGAGKS----TLLARMAGMTSGKGS---------IQFAGQPLEAWSATKLALHRA 75
Query: 198 KSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFK 257
Q + + + + ++ + S L+G +
Sbjct: 76 YLSQQQTPPF-ATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRV 134
Query: 258 EVAKVL-RDHGVDLLNNRFLILQEPIAKMEV 287
+A V+ + + L+L EP+ ++V
Sbjct: 135 RLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 29.6 bits (66), Expect = 0.57
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 136 FNAIIGPNGSGKS 148
+ ++GP G+GKS
Sbjct: 26 YCVLLGPTGAGKS 38
Score = 29.6 bits (66), Expect = 0.57
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 158 FNAIIGPNGSGKS 170
+ ++GP G+GKS
Sbjct: 26 YCVLLGPTGAGKS 38
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 29.2 bits (64), Expect = 0.58
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 138 AIIGPNGSGKS 148
I G G GK+
Sbjct: 4 IITGEPGVGKT 14
Score = 29.2 bits (64), Expect = 0.58
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 160 AIIGPNGSGKS 170
I G G GK+
Sbjct: 4 IITGEPGVGKT 14
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 29.3 bits (65), Expect = 0.60
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 136 FNAIIGPNGSGKS 148
+ I+GP G+GK+
Sbjct: 28 YFVILGPTGAGKT 40
Score = 29.3 bits (65), Expect = 0.60
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 158 FNAIIGPNGSGKS 170
+ I+GP G+GK+
Sbjct: 28 YFVILGPTGAGKT 40
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 29.4 bits (66), Expect = 0.64
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 136 FNAIIGPNGSGKSNVIDSMLFRF 158
A +G +G GKS +I +++ RF
Sbjct: 46 TVAFVGMSGGGKSTLI-NLIPRF 67
Score = 29.0 bits (65), Expect = 0.84
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 144 GSGKSNVIDSMLFRFN-----AIIGPNGSGKSNVIDSML 177
++ ++ + A +G +G GKS +I+ +
Sbjct: 27 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 65
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 29.5 bits (66), Expect = 0.67
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 138 AIIGPNGSGKSNVIDSMLFRFNAIIGPN 165
A++GPNGSGKS V ++L G
Sbjct: 44 ALVGPNGSGKSTVA-ALLQNLYQPTGGQ 70
Score = 28.3 bits (63), Expect = 1.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 160 AIIGPNGSGKSNVIDSML 177
A++GPNGSGKS V +
Sbjct: 44 ALVGPNGSGKSTVAALLQ 61
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 29.1 bits (65), Expect = 0.76
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 136 FNAIIGPNGSGKS 148
F +GP+G GKS
Sbjct: 28 FVVFVGPSGCGKS 40
Score = 29.1 bits (65), Expect = 0.76
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 158 FNAIIGPNGSGKS 170
F +GP+G GKS
Sbjct: 28 FVVFVGPSGCGKS 40
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 29.3 bits (65), Expect = 0.76
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 136 FNAIIGPNGSGKS 148
I+GP+G+GK+
Sbjct: 33 RFGILGPSGAGKT 45
Score = 29.3 bits (65), Expect = 0.76
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 158 FNAIIGPNGSGKS 170
I+GP+G+GK+
Sbjct: 33 RFGILGPSGAGKT 45
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 29.0 bits (65), Expect = 0.78
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 136 FNAIIGPNGSGKSNVIDSMLFRF 158
A++G +GSGKS + S++ RF
Sbjct: 43 TVALVGRSGSGKSTIA-SLITRF 64
Score = 27.9 bits (62), Expect = 1.9
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYRASKIR 188
A++G +GSGKS + + + I
Sbjct: 43 TVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 28.7 bits (64), Expect = 0.84
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 136 FNAIIGPNGSGKS 148
GPNG GK+
Sbjct: 29 VVNFHGPNGIGKT 41
Score = 28.7 bits (64), Expect = 0.84
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 158 FNAIIGPNGSGKS 170
GPNG GK+
Sbjct: 29 VVNFHGPNGIGKT 41
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 29.1 bits (65), Expect = 0.85
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 136 FNAIIGPNGSGKSNVIDSMLFRF 158
I+G +GSGKS + ++ RF
Sbjct: 31 VIGIVGRSGSGKSTLT-KLIQRF 52
Score = 28.7 bits (64), Expect = 1.0
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 158 FNAIIGPNGSGKSNVIDSMLFVFGYRASKIR 188
I+G +GSGKS + + + ++
Sbjct: 31 VIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 29.1 bits (65), Expect = 0.85
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 136 FNAIIGPNGSGKS 148
F ++GP+G GK+
Sbjct: 31 FMILLGPSGCGKT 43
Score = 29.1 bits (65), Expect = 0.85
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 158 FNAIIGPNGSGKS 170
F ++GP+G GK+
Sbjct: 31 FMILLGPSGCGKT 43
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 28.7 bits (64), Expect = 0.99
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 138 AIIGPNGSGKSNVIDSM 154
+IG NG+GK+ + ++
Sbjct: 36 TLIGANGAGKTTTLSAI 52
Score = 28.7 bits (64), Expect = 0.99
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 160 AIIGPNGSGKSNVIDSM 176
+IG NG+GK+ + ++
Sbjct: 36 TLIGANGAGKTTTLSAI 52
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 28.4 bits (62), Expect = 1.0
Identities = 24/166 (14%), Positives = 53/166 (31%), Gaps = 15/166 (9%)
Query: 160 AIIGPNGSGKSNVIDSMLFVFGYRA---------SKIRANKLSVLMHKSDQVGGVSRCSV 210
+ G GSGKS + +++ + G I+ ++ + +S Q +
Sbjct: 8 LLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIA 67
Query: 211 AIHFAQIIDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDL 270
A + + I+ G AF + + E + D G D
Sbjct: 68 ADVAGRYAK--EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDS 125
Query: 271 LNNRFLILQEPIAKMEVLYGKYDEER--TEKLTRVQLVETDLKALE 314
L++ + + G ++ Q +++ + AL+
Sbjct: 126 LSDPL--VVADLHSQFADLGAFEHHVLPVSGKDTDQALQSAINALQ 169
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 28.7 bits (63), Expect = 1.1
Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 9/90 (10%)
Query: 160 AIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIID 219
G GKS +I +L I + L + S + G +
Sbjct: 13 LTCGNVDDGKSTLIGRLLHDSK----MIYEDHLEAITRDSKKSGTTGD-----DVDLALL 63
Query: 220 KPNEEYEIIPGTDLEIARTAFYDNSSYYTL 249
+ E G +++A F + +
Sbjct: 64 VDGLQAEREQGITIDVAYRYFSTAKRKFII 93
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 28.8 bits (64), Expect = 1.1
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 138 AIIGPNGSGKS 148
IIGPNGSGKS
Sbjct: 34 LIIGPNGSGKS 44
Score = 28.8 bits (64), Expect = 1.1
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 160 AIIGPNGSGKS 170
IIGPNGSGKS
Sbjct: 34 LIIGPNGSGKS 44
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 28.6 bits (64), Expect = 1.2
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 136 FNAIIGPNGSGKS 148
F ++GP+G GK+
Sbjct: 34 FLVLLGPSGCGKT 46
Score = 28.6 bits (64), Expect = 1.2
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 158 FNAIIGPNGSGKS 170
F ++GP+G GK+
Sbjct: 34 FLVLLGPSGCGKT 46
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 28.7 bits (64), Expect = 1.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 136 FNAIIGPNGSGKS 148
+IIG +GSGKS
Sbjct: 30 VISIIGSSGSGKS 42
Score = 28.7 bits (64), Expect = 1.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 158 FNAIIGPNGSGKS 170
+IIG +GSGKS
Sbjct: 30 VISIIGSSGSGKS 42
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.7 bits (63), Expect = 1.3
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 128 IGTNRYKRFNAIIGPNGSGKSNVIDSMLFRF 158
+ + R + G G+GKS ++ + +
Sbjct: 44 MPRDAEPRHLLVNGATGTGKSVLLRELAYTG 74
Score = 27.2 bits (59), Expect = 3.6
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 160 AIIGPNGSGKSNVIDSML 177
+ G G+GKS ++ +
Sbjct: 54 LVNGATGTGKSVLLRELA 71
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 28.4 bits (62), Expect = 1.3
Identities = 36/277 (12%), Positives = 75/277 (27%), Gaps = 29/277 (10%)
Query: 115 EKETGLLEYLEEII-GTNRYKRFNAII--GPNGSGKSNVI-------DSMLFRFNA-IIG 163
+ E L + LEE+I G + A + G GSGK+++ + +
Sbjct: 10 QFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 69
Query: 164 PNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNE 223
++ + ++ + G + +
Sbjct: 70 QQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQT-- 127
Query: 224 EYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLILQEPIA 283
+ + Y+ Y K + + D ++
Sbjct: 128 ---------ATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHD 178
Query: 284 KMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERY 343
+ K E L + L D++ E K + LE + K + R
Sbjct: 179 IVV----KNLPTNLETLHKTGLFS-DIRLYNREGVKLYSSLETPSIS-PKETLEKELNRK 232
Query: 344 VNMKNLGEHETKVQQ-MEQELTANLESIKKCTDEMES 379
V+ K + +++Q M K ++ES
Sbjct: 233 VSGKEIQPTLERIEQKMVLNKHQETPEFKAIQQKLES 269
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 28.4 bits (63), Expect = 1.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 138 AIIGPNGSGKS 148
+IGPNG+GK+
Sbjct: 32 GLIGPNGAGKT 42
Score = 28.4 bits (63), Expect = 1.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 160 AIIGPNGSGKS 170
+IGPNG+GK+
Sbjct: 32 GLIGPNGAGKT 42
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 27.6 bits (60), Expect = 2.3
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 124 LEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVI 173
L+E IG K+ ++ + V+D +L GP G GK+ +
Sbjct: 8 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLL-----AGPPGLGKTTLA 52
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 27.4 bits (59), Expect = 2.7
Identities = 19/177 (10%), Positives = 41/177 (23%), Gaps = 8/177 (4%)
Query: 161 IIGPNGSGKS---NVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQI 217
+ G SGK + L G R+ + S+ I
Sbjct: 11 LTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAF 70
Query: 218 IDKPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLRDHGVDLLNNRFLI 277
+ + VA L +
Sbjct: 71 VATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAA 130
Query: 278 LQE-PIAKMEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRK 333
+ I + Y+ L V+ +++ + + + LE + ++R+
Sbjct: 131 ARRGEIKGFTGVDDPYETPEKADLV----VDFSKQSVRSIVHEIILVLESQGFLERQ 183
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 27.4 bits (60), Expect = 3.1
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 101 EVEQISMMPPKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNA 160
+ I + G + + + I ++ A+ G GSGKS+ I+++ N
Sbjct: 25 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNV--AVTGETGSGKSSFINTLRGIGNE 82
Query: 161 IIGPNGSGKS 170
G +G
Sbjct: 83 EEGAAKTGVV 92
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 26.8 bits (58), Expect = 3.2
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 135 RFNAIIGPNGSGKSNVIDSMLFRFNAIIG 163
R I GP+G+GKS ++ + + G
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30
>d1x6va2 c.26.1.5 (A:390-624) ATP sulfurylase catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 235
Score = 27.3 bits (60), Expect = 3.3
Identities = 19/157 (12%), Positives = 46/157 (29%), Gaps = 27/157 (17%)
Query: 125 EEIIGTNRYKRFNAIIGPN-----GSGKSNVIDSMLFRFNA-----IIGPNGSGKSNVID 174
++ ++ +G + V R A I+G + +G +
Sbjct: 84 AAVLEEGVLNPETTVVAIFPSPMMYAGPTEVQWHCRARMVAGANFYIVGRDPAGMPHPET 143
Query: 175 SMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIIDKPNEEYEIIPGTDL- 233
+K+ ++ + + + +E++E I GT +
Sbjct: 144 GKDLYEPSHGAKVLTMAPGLITLEIVPFRVAAYNKKKKRMDYYDSEHHEDFEFISGTRMR 203
Query: 234 EIARTAFYDNSSYYTLNGKKV----HFKEVAKVLRDH 266
++AR G+K + VL ++
Sbjct: 204 KLAR------------EGQKPPEGFMAPKAWTVLTEY 228
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 27.1 bits (60), Expect = 3.6
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 142 PNGSGKSNVIDSMLFR-----FNAIIGPNGSGKS 170
G + ++ F +I+GP+GSGKS
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKS 45
Score = 26.7 bits (59), Expect = 4.6
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 136 FNAIIGPNGSGKS 148
F +I+GP+GSGKS
Sbjct: 33 FVSIMGPSGSGKS 45
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 26.9 bits (58), Expect = 3.7
Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 3/68 (4%)
Query: 161 IIGPNGSGKSNVIDSML---FVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQI 217
+ GP+ GKS V+ + + S + D +
Sbjct: 7 LSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGE 66
Query: 218 IDKPNEEY 225
+ + E +
Sbjct: 67 LLEWAEIH 74
Score = 25.3 bits (54), Expect = 9.5
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 139 IIGPNGSGKSNVIDSMLFRF 158
+ GP+ GKS V+ + R
Sbjct: 7 LSGPSAVGKSTVVRCLRERI 26
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 26.8 bits (58), Expect = 3.7
Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 119 GLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRF 158
GLL L ++ + ++G + +GK+ ++L +
Sbjct: 1 GLLSILRKLKSAPDQEVRILLLGLDNAGKT----TLLKQL 36
>d2ilka_ a.26.1.3 (A:) Interleukin-10 (cytokine synthesis inhibitory
factor, CSIF) {Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 26.6 bits (59), Expect = 3.8
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 285 MEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELEN---CVQRKHNEIYQYE 341
+E + + + + + V + +LK L LR+ FL EN V++ N + +
Sbjct: 68 LEEVMPQAENQDPDIKAHVNSLGENLKTLRLRLRRCHRFLPCENKSKAVEQVKNAFNKLQ 127
Query: 342 RYVNMKNLGEHETKVQQMEQELTANLES 369
K + E + + +E +T + +
Sbjct: 128 EKGIYKAMSEFDIFINYIEAYMTMKIRN 155
>d1a6ca3 b.121.4.2 (A:349-513) Nepovirus capsid protein {TRSV
(Tobacco ringspot virus) [TaxId: 12282]}
Length = 165
Score = 26.7 bits (59), Expect = 3.9
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 81 VAFNFKSYAGYVTLGPFNTGEVEQISMMPPKGK 113
+ SYAG G G+ + + K
Sbjct: 111 IPIFLGSYAGATPSGA--LGKQNYVRISIVNAK 141
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 26.9 bits (59), Expect = 3.9
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 160 AIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIID 219
+IG SGKS +++ G I + ++ ++G S +A ++D
Sbjct: 10 VVIGHVDSGKSTTTGHLIYKCG----GIDKRTIEKFEKEAAELGKGS-----FKYAWVLD 60
Query: 220 KPNEEYEIIPGTDLEIARTAFYDNSSYYTL 249
K E E G ++IA F T+
Sbjct: 61 KLKAERE--RGITIDIALWKFETPKYQVTV 88
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 26.8 bits (58), Expect = 4.0
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 135 RFNAIIGPNGSGKSNVIDSMLFRFNAIIG 163
R + GP+G+GKS ++ + ++I G
Sbjct: 1 RPVVLSGPSGAGKSTLLKKLFQEHSSIFG 29
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 26.7 bits (58), Expect = 4.1
Identities = 18/102 (17%), Positives = 38/102 (37%)
Query: 117 ETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSM 176
+T LLE L + + ++G G GKS+ ++S++ I P S +
Sbjct: 15 QTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVS 74
Query: 177 LFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQII 218
G+ + I L + +D + + + ++
Sbjct: 75 RSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVL 116
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 26.2 bits (56), Expect = 4.7
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 138 AIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYR 183
I G +GKS++++++ R AI+ +V+ + + G
Sbjct: 5 VIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP 50
>d2ejna1 a.101.1.1 (A:1-72) Allergen Fel d I-A chain {Cat (Felis
catus) [TaxId: 9685]}
Length = 72
Score = 24.8 bits (54), Expect = 5.0
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 350 GEHETKVQQMEQ-----ELTANLESIKKCTDEM 377
G + V+Q+ Q + N +K C D
Sbjct: 16 GTPDEYVEQVAQYKALPVVLENARILKNCVDAK 48
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 26.4 bits (58), Expect = 5.1
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 136 FNAIIGPNGSGKS 148
+IG +G+GKS
Sbjct: 33 IYGVIGASGAGKS 45
Score = 26.4 bits (58), Expect = 5.1
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 158 FNAIIGPNGSGKS 170
+IG +G+GKS
Sbjct: 33 IYGVIGASGAGKS 45
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 26.4 bits (57), Expect = 5.5
Identities = 3/30 (10%), Positives = 16/30 (53%)
Query: 134 KRFNAIIGPNGSGKSNVIDSMLFRFNAIIG 163
++ ++G +G G+ ++ ++++ +
Sbjct: 3 RKTLVLLGAHGVGRRHIKNTLITKHPDRFA 32
>d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 421
Score = 26.7 bits (58), Expect = 5.6
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 84 NFKSYAGYVTLGP 96
N Y GY+ +
Sbjct: 13 NVTQYTGYLDVED 25
>g1wht.1 c.69.1.5 (A:,B:) Serine carboxypeptidase II {Wheat
(Triticum vulgare) [TaxId: 4565]}
Length = 409
Score = 26.7 bits (58), Expect = 5.8
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 84 NFKSYAGYVTLGP 96
+F Y+GY+T+
Sbjct: 17 DFDMYSGYITVDE 29
>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia
coli [TaxId: 562]}
Length = 936
Score = 26.6 bits (58), Expect = 6.0
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 120 LLEYLEEII---GTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNV 172
+ Y+ E + +R + + G + + L RF++ +G + G V
Sbjct: 210 GMSYIHETVWKGVPKFLRRVDTALKNIGINERLPYNVSLIRFSSWMGGDRDGNPRV 265
>d1qsda_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's yeast
(Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]}
Length = 102
Score = 25.0 bits (55), Expect = 6.3
Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 5/83 (6%)
Query: 292 YDEERTEKLTRVQLVETDLKALEPELRKAVNFLE-----LENCVQRKHNEIYQYERYVNM 346
Y +E ++ V ++ D +L+K L+ L ++ E+++
Sbjct: 20 YQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFLKT 79
Query: 347 KNLGEHETKVQQMEQELTANLES 369
E + + L+S
Sbjct: 80 YQGTEDVSDARSAITSAQELLDS 102
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 26.1 bits (56), Expect = 6.6
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 139 IIGPNGSGKSNVIDSML 155
+G GSGK+ +
Sbjct: 5 FVGTAGSGKTTLTGEFG 21
Score = 26.1 bits (56), Expect = 6.6
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 161 IIGPNGSGKSNVIDSML 177
+G GSGK+ +
Sbjct: 5 FVGTAGSGKTTLTGEFG 21
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 26.3 bits (57), Expect = 6.6
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 11/105 (10%)
Query: 160 AIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHKSDQVGGVSRCSVAIHFAQIID 219
+IG GKS ++ +L G+ I + + ++G S FA ++D
Sbjct: 7 IVIGHVDHGKSTLVGRLLMDRGF----IDEKTVKEAEEAAKKLGKESE-----KFAFLLD 57
Query: 220 KPNEEYEIIPGTDLEIARTAFYDNSSYYTLNGKKVHFKEVAKVLR 264
+ EE E G + + F ++T+ H V ++
Sbjct: 58 RLKEERE--RGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMIT 100
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 26.4 bits (57), Expect = 6.7
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 138 AIIGPNGSGKSNVIDSMLFRFNAI 161
A++G GSGK+ + +++L++ A
Sbjct: 6 ALVGHAGSGKTTLTEALLYKTGAK 29
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 26.2 bits (56), Expect = 7.1
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 110 PKGKTEKETGLLEYLEEIIGTNRYKRFNAIIGPNGSGKSNVIDSMLFRFNA 160
PK + + +E++ ++G +GKS++I + N
Sbjct: 7 PKDNRKDFFDREKEIEKL--KGLRAPITLVLGLRRTGKSSIIKIGINELNL 55
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 26.2 bits (56), Expect = 7.3
Identities = 11/82 (13%), Positives = 25/82 (30%)
Query: 139 IIGPNGSGKSNVIDSMLFRFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANKLSVLMHK 198
+ G +GKS + ++ + G + F A + +
Sbjct: 39 LFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDD 98
Query: 199 SDQVGGVSRCSVAIHFAQIIDK 220
+ +R A H +++D
Sbjct: 99 ALNNVAYARAYNADHQLRLLDA 120
>d2r7ka1 c.30.1.8 (A:1-123) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Methanocaldococcus
jannaschii [TaxId: 2190]}
Length = 123
Score = 25.4 bits (56), Expect = 7.3
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 133 YKRF----NAIIGPNGSGKSNV-IDSMLFRFNAIIGPNGS-----GKSNVIDSMLF-VFG 181
YKRF I N S N I L N+I+ P+GS G NV +S L +FG
Sbjct: 55 YKRFKVADKFIYVDNFSDIKNEEIQEKLRELNSIVVPHGSFIAYCGLDNVENSFLVPMFG 114
Query: 182 YRA 184
R
Sbjct: 115 NRR 117
>g1gxs.1 c.69.1.5 (A:,B:) Hydroxynitrile lyase {Sorghum (Sorghum
bicolor) [TaxId: 4558]}
Length = 425
Score = 26.3 bits (57), Expect = 7.5
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 84 NFKSYAGYVTLGP 96
F Y GYVT+
Sbjct: 18 AFGMYGGYVTIDD 30
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 25.9 bits (55), Expect = 7.8
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 138 AIIGPNGSGKSNVIDSMLFRFNAIIGP 164
I+G GKS + + ++ + AI+
Sbjct: 4 LIVGRPNVGKSTLFNKLVKKKKAIVED 30
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 25.9 bits (55), Expect = 7.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 138 AIIGPNGSGKSNVIDSMLFRFNAIIGP 164
AI+G GKS +++++L A I P
Sbjct: 9 AIVGKPNVGKSTLLNNLLGVKVAPISP 35
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 26.0 bits (57), Expect = 8.2
Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 157 RFNAIIGPNGSGKSNVIDSMLFVFGYRASKIRANK---LSVLMHK 198
+ GP +GK+N+ +++ + N+ + + K
Sbjct: 105 NTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDK 149
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.135 0.380
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,419,765
Number of extensions: 68705
Number of successful extensions: 422
Number of sequences better than 10.0: 1
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 117
Length of query: 388
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 301
Effective length of database: 1,213,086
Effective search space: 365138886
Effective search space used: 365138886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.3 bits)