BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14063
(531 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L51|B Chain B, Crystal Structure Of The Mouse Condensin Hinge Domain
Length = 166
Score = 116 bits (290), Expect = 4e-26, Method: Composition-based stats.
Identities = 62/154 (40%), Positives = 96/154 (62%), Gaps = 2/154 (1%)
Query: 229 RLIDFVMQLKSENRVSXXXXXXXXXXXXXQKYDIAVSTACGALNYIVTETVEAGEAVIAA 288
+++D ++Q K R+ +KYDIA+S+ C AL+YIV ++++ + +
Sbjct: 2 KVLDAIIQEKKSGRIPGIYGRLGDLGAIDEKYDIAISSCCHALDYIVVDSIDTAQECVNF 61
Query: 289 VKRQNVGRVNVIPLDKMQQYHSQCYDKYRTPENVPRLIDLIQVQDEKIRLAFYFATRETL 348
+K+ N+G I LDK + + K +TPEN PRL DL++V++E+IR AFYFA R+TL
Sbjct: 62 LKKHNIGIATFIGLDKXTVWAKK-XSKIQTPENTPRLFDLVKVKNEEIRQAFYFALRDTL 120
Query: 349 VAQDLNQAKRIGYS-GGGYRMVTLEGAIIEPSET 381
VA +L+QA R+ Y +R+VTL+G IIE S T
Sbjct: 121 VANNLDQATRVAYQRDRRWRVVTLQGQIIEQSGT 154
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/41 (56%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 414 ETLVAQDLNQAKRIGYSGGG-YRMVTLEGAIIEPSGTMSGG 453
+TLVA +L+QA R+ Y +R+VTL+G IIE SGT SGG
Sbjct: 118 DTLVANNLDQATRVAYQRDRRWRVVTLQGQIIEQSGTXSGG 158
>pdb|2WD5|A Chain A, Smc Hinge Heterodimer (Mouse)
Length = 233
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 258 QKYDIAVSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKY 316
+KY IAV+ G ++ I+ ++ + G I +K Q +PLD ++ + +K
Sbjct: 68 KKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTD--EKL 125
Query: 317 RTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGG-YRMVTLEGAI 375
R + +ID+I+ + I+ A +A LV ++ A+RI + G ++ V L+G +
Sbjct: 126 RELKGAKLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVALDGTL 185
Query: 376 IEPSETLV--AQDLNQAKR 392
+ S + A DL R
Sbjct: 186 FQKSGVISGGASDLKAKAR 204
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 415 TLVAQDLNQAKRIGYSGGG-YRMVTLEGAIIEPSGTMSGGGSN 456
LV ++ A+RI + G ++ V L+G + + SG +SGG S+
Sbjct: 156 ALVCDNVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGASD 198
>pdb|3NWC|A Chain A, Crystal Structure Of The Pyrococcus Furiosus Smc Protein
Hinge Domain
pdb|3NWC|B Chain B, Crystal Structure Of The Pyrococcus Furiosus Smc Protein
Hinge Domain
Length = 189
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 258 QKYDIAVSTACG--ALNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDK 315
+ Y +A+ A G A N +V + + A E I +K +GR+ +PL+K++ H
Sbjct: 49 EAYALAIEVALGNRADNVVVEDELVA-EKAIKYLKEHKLGRLTFLPLNKIKPKHVD---- 103
Query: 316 YRTPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAI 375
+ +P +D+I+ D+KI A FA +T++ +A+ G R VT+EG +
Sbjct: 104 --SSVGLP-AVDVIE-YDQKIENAVKFALGDTVIVNSXEEARP---HIGKVRXVTIEGEL 156
Query: 376 IEPS 379
E S
Sbjct: 157 YERS 160
>pdb|1GXL|A Chain A, Smc Hinge Domain From T. Maritima With Coiled Coil
pdb|1GXL|B Chain B, Smc Hinge Domain From T. Maritima With Coiled Coil
pdb|1GXL|C Chain C, Smc Hinge Domain From T. Maritima With Coiled Coil
pdb|1GXL|D Chain D, Smc Hinge Domain From T. Maritima With Coiled Coil
Length = 213
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 19/129 (14%)
Query: 258 QKYDIAVSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKY 316
+KY +AVS G IV V+ +A++ +K+ GRV ++PLD + +++
Sbjct: 56 EKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLI----DGSFNRI 111
Query: 317 RTPEN----VPRLIDLIQV-QDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRM--- 368
EN V +DL++ D ++ F F ++V + L+ A R+ YR+
Sbjct: 112 SGLENERGFVGYAVDLVKFPSDLEVLGGFLFGN--SVVVETLDDAIRMKKK---YRLNTR 166
Query: 369 -VTLEGAII 376
TL+G +I
Sbjct: 167 IATLDGELI 175
>pdb|1GXJ|A Chain A, Smc Hinge Domain From T. Maritima WO COILED COIL
pdb|1GXJ|B Chain B, Smc Hinge Domain From T. Maritima WO COILED COIL
pdb|1GXK|A Chain A, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
pdb|1GXK|B Chain B, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
pdb|1GXK|C Chain C, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
pdb|1GXK|D Chain D, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
Length = 186
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Query: 258 QKYDIAVSTACGA-LNYIVTETVEAGEAVIAAVKRQNVGRVNVIPLDKMQQYHSQCYDKY 316
+KY +AVS G IV V+ +A++ +K+ GRV ++PLD + ++
Sbjct: 44 EKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLE 103
Query: 317 RTPENVPRLIDLIQV-QDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRM----VTL 371
V +DL++ D ++ F F ++V + L+ A R+ YR+ TL
Sbjct: 104 NERGFVGYAVDLVKFPSDLEVLGGFLFGN--SVVVETLDDAIRMKKK---YRLNTRIATL 158
Query: 372 EGAII 376
+G +I
Sbjct: 159 DGELI 163
>pdb|2BWM|A Chain A, 1.8a Crystal Structure Of Of Psathyrella Velutina Lectin
In Complex With Methyl
2-Acetamido-1,2-Dideoxy-1-Seleno-Beta- D-Glucopyranoside
pdb|2BWR|A Chain A, Crystal Structure Of Psathyrella Velutina Lectin At 1.5a
Resolution
pdb|2BWR|B Chain B, Crystal Structure Of Psathyrella Velutina Lectin At 1.5a
Resolution
pdb|2C25|A Chain A, 1.8a Crystal Structure Of Psathyrella Velutina Lectin In
Complex With N-Acetylneuraminic Acid
pdb|2C25|B Chain B, 1.8a Crystal Structure Of Psathyrella Velutina Lectin In
Complex With N-Acetylneuraminic Acid
pdb|2C4D|A Chain A, 2.6a Crystal Structure Of Psathyrella Velutina Lectin In
Complex With N-Acetylglucosamine
Length = 401
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 24/123 (19%)
Query: 318 TPENVPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIE 377
P +P + DL+ + + + R +L+ Q + GY GG+R +E
Sbjct: 11 VPTRIPGVADLVGFGNGGV-----YIIRNSLLIQVVKVINNFGYDAGGWR--------VE 57
Query: 378 PSETLVAQDL--NQAKRIGYSGGGYRMVTLEG--AIIEPSETLVAQDLNQAKRIGYSGGG 433
L+A NQ+ +G+ G + T G ++P + ++A Y+ GG
Sbjct: 58 KHVRLLADTTGDNQSDVVGFGENGVWISTNNGNNTFVDPPKMVLAN-------FAYAAGG 110
Query: 434 YRM 436
+R+
Sbjct: 111 WRV 113
>pdb|3L51|A Chain A, Crystal Structure Of The Mouse Condensin Hinge Domain
Length = 161
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 415 TLVAQDLNQAKRIGYSGG-GYRMVTLEGAIIEPSGTMSGG 453
T V + + AK++ + R VTL G + +P GT+SGG
Sbjct: 122 TFVCNNXDNAKKVAFDKRIXTRTVTLGGDVFDPHGTLSGG 161
>pdb|3PR7|A Chain A, Multi-Functional And Mechanosensitive Receptor Binding
Activity Of The Moraxella Catarrhalis Adhesin Uspa1
pdb|3PR7|B Chain B, Multi-Functional And Mechanosensitive Receptor Binding
Activity Of The Moraxella Catarrhalis Adhesin Uspa1
pdb|3PR7|C Chain C, Multi-Functional And Mechanosensitive Receptor Binding
Activity Of The Moraxella Catarrhalis Adhesin Uspa1
Length = 311
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 61/160 (38%), Gaps = 43/160 (26%)
Query: 322 VPRLIDLIQVQDEKIRLAFYFATRETLVAQDLNQAKRIGYSGGGYRMVTLEGAIIEPS-- 379
V + + I D Y T+ D N+ K R T+ G + +
Sbjct: 10 VGKATNKISGGDNNTANGTYL----TIGGGDYNKTKG--------RYSTIGGGLFNEATN 57
Query: 380 --ETLVAQDLNQAKR----IGYSGGGYRMVTLEGAIIEPSETLVAQDLNQAKR----IGY 429
T+ + N+AK IG GGGY T T+ D N AK IG
Sbjct: 58 EYSTIGSGGYNKAKGRYSTIG--GGGYNEAT------NQYSTIGGGDNNTAKGRYSTIG- 108
Query: 430 SGGGYRMVTLEGAIIEPSGTMSGGGSNPIRGLMGRKATVS 469
GGGY T+E + T+ GGG N + GR +TV+
Sbjct: 109 -GGGYNEATIENS------TVGGGGYNQAK---GRNSTVA 138
>pdb|2NUP|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 196
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 56/112 (50%), Gaps = 20/112 (17%)
Query: 1 MEVLYGKYDEERTEKLTRVQLVETDLKALEPELRKAVNFLELENCVQRKHNEIYQYERYV 60
+E L+ ++DE+ +K+ P + + +F+E + +Q K ++Y R
Sbjct: 89 LEDLHSEFDEQHGKKV--------------PTVSRPYSFIEFDTFIQ-KTKKLYIDSR-- 131
Query: 61 NMKNLGEHETKVQQMEQELTANLESIKK---CTDEMESAKSELKTVEKKGKE 109
+NLG T++Q +++ + AN+E + + ++S + L ++ KK ++
Sbjct: 132 ARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQ 183
>pdb|1G9K|A Chain A, Crystal Structure Of A Psychrophilic Alkaline Protease
From Pseudomonas Tac Ii 18
pdb|1O0Q|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 1 Mm Edta
pdb|1O0T|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 5 Mm Edta (5
Days)
pdb|1OM6|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 5mm Edta (2
Months)
pdb|1OM7|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Soaked In 85 Mm Edta
pdb|1OM8|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallyzed With 10 Mm Edta
pdb|1OMJ|A Chain A, Crystal Structure Of A Psychrophilic Alkaline Protease
From Pseudomonas Tac Ii 18
Length = 463
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 259 KYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNV 299
K D+ T G LN++ T AG+A+++ + N G + V
Sbjct: 398 KIDLTAITKLGGLNFVDAFTGHAGDAIVSYHQASNAGSLQV 438
>pdb|1H71|P Chain P, Psychrophilic Protease From Pseudoalteromonas 'tac Ii 18'
Length = 463
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 259 KYDIAVSTACGALNYIVTETVEAGEAVIAAVKRQNVGRVNV 299
K D+ T G LN++ T AG+A+++ + N G + V
Sbjct: 398 KIDLTAITKLGGLNFVDAFTGHAGDAIVSYHQASNAGSLQV 438
>pdb|3P8C|A Chain A, Structure And Control Of The Actin Regulatory Wave Complex
Length = 1253
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 14 EKLTRVQLVETDLKALEPELRKAVNFLELE-NCVQRKHNEI 53
E+ RV++ E ++ LEPE+ K +NF+ + N ++R E+
Sbjct: 100 EQPNRVEIYEKTVEVLEPEVTKLMNFMYFQRNAIERFCGEV 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,056,048
Number of Sequences: 62578
Number of extensions: 495466
Number of successful extensions: 1554
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1482
Number of HSP's gapped (non-prelim): 86
length of query: 531
length of database: 14,973,337
effective HSP length: 103
effective length of query: 428
effective length of database: 8,527,803
effective search space: 3649899684
effective search space used: 3649899684
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)